Citrus Sinensis ID: 040643
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 968 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | yes | no | 0.998 | 0.908 | 0.609 | 0.0 | |
| Q9FIB2 | 995 | Putative pentatricopeptid | no | no | 0.969 | 0.942 | 0.368 | 0.0 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.823 | 0.918 | 0.390 | 1e-178 | |
| Q9SMZ2 | 990 | Pentatricopeptide repeat- | no | no | 0.942 | 0.921 | 0.344 | 1e-170 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.775 | 0.883 | 0.373 | 1e-162 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.875 | 0.960 | 0.362 | 1e-162 | |
| Q9CAA8 | 743 | Putative pentatricopeptid | no | no | 0.689 | 0.897 | 0.391 | 1e-154 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.811 | 0.883 | 0.344 | 1e-153 | |
| Q0WN60 | 970 | Pentatricopeptide repeat- | no | no | 0.862 | 0.860 | 0.345 | 1e-153 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.758 | 0.907 | 0.369 | 1e-153 |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 1287 bits (3330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/991 (60%), Positives = 765/991 (77%), Gaps = 24/991 (2%)
Query: 1 MEERGIQANSQTFVWLLEGCL-SYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSG 59
+E RGI+ N QT WLLEGCL + GSL E +K+H +ILKLG D L +K F+ YL G
Sbjct: 75 VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 134
Query: 60 DLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLR 119
DL A K+FD+M +RT+F+WNK+I ++ L G V GLF++M+ ++V PNE TF GVL
Sbjct: 135 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 194
Query: 120 ACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDS 179
AC G G+VA V QIH I+ G S ++ NPLIDLY++NGF+D A++VF+ L KD
Sbjct: 195 ACRG-GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDH 253
Query: 180 VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGL 239
SWVAMISG S+N E EAI LFC M++LG +PTPYA SS LSAC KIE EIGEQ HGL
Sbjct: 254 SSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGL 313
Query: 240 IFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKA 299
+ K GFSS+T+VCNALV+LY GNL SAE IFS M QRD VTYN+LI+GL+QCGY +KA
Sbjct: 314 VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 373
Query: 300 LELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDL 359
+ELF++M LD L+PD T+ASLV AC++ G G+QLH+Y K+G + + +EG++L+L
Sbjct: 374 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433
Query: 360 YVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTY 419
Y KC+D+ETA +FL TE ENVVLWNVMLVAYG L+DL SF+IF+QMQ E + PNQYTY
Sbjct: 434 YAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 493
Query: 420 PTILRTCTSLGALSLGEQIHTQ----------------------LGNLNTAQEILRRLPE 457
P+IL+TC LG L LGEQIH+Q LG L+TA +IL R
Sbjct: 494 PSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG 553
Query: 458 DDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQI 517
DVVSWT MI G+ Q+ +AL F +M ++GI+SD +G ++A+SACAG+QAL +G+QI
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613
Query: 518 HAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYC 577
HAQ+ +SGFS DL NAL++LY+RCG+I+E+YL F + +A DNI+WN L+SGF QSG
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673
Query: 578 EGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSL 637
E AL+VF +M + G+ N +TFGS V AA+ AN+KQGKQVHA+I KTGYDSETE N+L
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733
Query: 638 ITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH 697
I++YAKCGSI DA+++FLE+ KNEVSWNA+I +S+HG+ EA++ F++M +V PNH
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 793
Query: 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTE 757
VT VGVLSACSH+GLV++G+ YFESM++EYGL PKPEHY CVVD+L RAG LSRA+EF +
Sbjct: 794 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 853
Query: 758 QMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817
+MPI+PDA+VWRTLLSAC VHKNMEIGE+AA+HLLELEPEDSATYVLLSN+YA + KWD
Sbjct: 854 EMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDA 913
Query: 818 RDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGY 877
RD RQ MK++GVKKEPGQSWIEVKNSIH+F+VGD+ HPLAD+I++Y +L +R +EIGY
Sbjct: 914 RDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGY 973
Query: 878 VQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKF 937
VQ +SL ++L+ EQKDP ++IHSEKLAI+FGLLSL ++PI V+KNLRVCNDCH WIKF
Sbjct: 974 VQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKF 1033
Query: 938 VSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
VSK+SNR I+VRDA RFHHFEGG CSC+DYW
Sbjct: 1034 VSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB2|PP373_ARATH Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/978 (36%), Positives = 566/978 (57%), Gaps = 40/978 (4%)
Query: 29 AKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFSWNKLISGFVA 88
A+ H ++ K D + LC+ N YL +GD SA K+FD+M R SW ++SG+
Sbjct: 20 ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79
Query: 89 KKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSP 148
L M+ + + N+ FV VLRAC G+V + QIHGL+ +
Sbjct: 80 NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDA 139
Query: 149 LISNPLIDLYAKN-GFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHI 207
++SN LI +Y K G + A F ++ K+SVSW ++IS +SQ G +R A +F M
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199
Query: 208 LGTVPTPYAISSALS-ACTKIEL-FEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNL 265
G+ PT Y S ++ AC+ E + EQ I K G ++ FV + LV+ +++SG+L
Sbjct: 200 DGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSL 259
Query: 266 TSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQ--LDCLKPDCVTVASLV- 322
+ A ++F++M+ R+ VT N L+ GL + + ++A +LF M +D V + S
Sbjct: 260 SYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFP 319
Query: 323 --SACASVGAFRTGEQLHSYAIKVGISKDIIVEGS-MLDLYVKCSDVETAYKFFLTTETE 379
S VG + G ++H + I G+ ++ G+ ++++Y KC + A + F +
Sbjct: 320 EYSLAEEVG-LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDK 378
Query: 380 NVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIH 439
+ V WN M+ Q E+ + +K M+ + P +T + L +C SL LG+QIH
Sbjct: 379 DSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIH 438
Query: 440 ----------------------TQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQ-HGMF 476
+ G LN ++I +PE D VSW ++I +
Sbjct: 439 GESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSL 498
Query: 477 GEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNAL 536
EA+ F + G + + I FSS +SA + + G+QIH + + +D+ + NAL
Sbjct: 499 PEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENAL 558
Query: 537 ISLYARCGRIQEAYLVFNKI-DAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN 595
I+ Y +CG + +F+++ + +DN++WN +ISG+ + AL + M Q G + +
Sbjct: 559 IACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLD 618
Query: 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFL 655
+ + +V+SA A++A +++G +VHA ++ +S+ ++L+ +Y+KCG +D A R F
Sbjct: 619 SFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFN 678
Query: 656 EMPEKNEVSWNAMITGFSQHGYALEAINLFEKMK-KHDVMPNHVTFVGVLSACSHVGLVN 714
MP +N SWN+MI+G+++HG EA+ LFE MK P+HVTFVGVLSACSH GL+
Sbjct: 679 TMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLE 738
Query: 715 EGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSA 774
EG ++FESMS YGL P+ EH++C+ D+LGRAG L + +F E+MP++P+ ++WRT+L A
Sbjct: 739 EGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGA 798
Query: 775 C-RVH-KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKK 832
C R + + E+G+ AA L +LEPE++ YVLL N+YAA G+W+ + R+ MKD VKK
Sbjct: 799 CCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKK 858
Query: 833 EPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYV-QGRYSLWSDLEQE 891
E G SW+ +K+ +H F GD+ HP AD IY L LNR++ + GYV Q ++L+ DLEQE
Sbjct: 859 EAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALY-DLEQE 917
Query: 892 QKDPCVYIHSEKLAIAFGLLS-LSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRD 950
K+ + HSEKLA+AF L + S ++PI ++KNLRVC DCH+ K++SKI R I++RD
Sbjct: 918 NKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRD 977
Query: 951 ANRFHHFEGGVCSCRDYW 968
+NRFHHF+ G CSC D+W
Sbjct: 978 SNRFHHFQDGACSCSDFW 995
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 627 bits (1618), Expect = e-178, Method: Compositional matrix adjust.
Identities = 324/830 (39%), Positives = 505/830 (60%), Gaps = 33/830 (3%)
Query: 166 SAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACT 225
+A +F+ +D S+++++ GFS++G +EA LF +H LG SS L
Sbjct: 45 NAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSA 104
Query: 226 KI--ELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTY 283
+ ELF G Q H K+GF + V +LV Y + N ++F +M++R+ VT+
Sbjct: 105 TLCDELF--GRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162
Query: 284 NSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIK 343
+LISG A+ +D+ L LF +MQ + +P+ T A+ + A G G Q+H+ +K
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222
Query: 344 VGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQI 403
G+ K I V S+++LY+KC +V A F TE ++VV WN M+ Y E+ +
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282
Query: 404 FKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL--------GNLNTAQEI---- 451
F M+ + ++ ++ ++++ C +L L EQ+H + N+ TA +
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSK 342
Query: 452 -------LRRLPE----DDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSS 500
LR E +VVSWTAMI GF+Q+ EA++LF EM+ +G++ + +S
Sbjct: 343 CTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSV 402
Query: 501 AISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD 560
++A I ++HAQ + + ++G AL+ Y + G+++EA VF+ ID KD
Sbjct: 403 ILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKD 458
Query: 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA-AANLANIKQGKQVH 619
++W+ +++G+AQ+G E A+++F ++T+ G++ N +TF S+++ AA A++ QGKQ H
Sbjct: 459 IVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFH 518
Query: 620 AMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYAL 679
IK+ DS S++L+T+YAK G+I+ A+ F EK+ VSWN+MI+G++QHG A+
Sbjct: 519 GFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAM 578
Query: 680 EAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV 739
+A+++F++MKK V + VTF+GV +AC+H GLV EG +YF+ M + + P EH +C+
Sbjct: 579 KALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCM 638
Query: 740 VDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799
VDL RAG L +A + E MP + +WRT+L+ACRVHK E+G AA ++ ++PEDS
Sbjct: 639 VDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDS 698
Query: 800 ATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLAD 859
A YVLLSN+YA +G W R ++R++M +R VKKEPG SWIEVKN ++F GDR HPL D
Sbjct: 699 AAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKD 758
Query: 860 KIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPI 919
+IY L +L+ R+ ++GY + D++ E K+ + HSE+LAIAFGL++ P+
Sbjct: 759 QIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPL 818
Query: 920 LVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEG-GVCSCRDYW 968
L+IKNLRVC DCH IK ++KI R IVVRD+NRFHHF GVCSC D+W
Sbjct: 819 LIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SMZ2|PP347_ARATH Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 598 bits (1541), Expect = e-170, Method: Compositional matrix adjust.
Identities = 340/987 (34%), Positives = 518/987 (52%), Gaps = 75/987 (7%)
Query: 16 LLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRT 75
L ++ L+ K H +IL + E+ L + ++Y G L A ++FD M R
Sbjct: 45 FLRNAITSSDLMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRD 104
Query: 76 VFSWNKLISGF------VAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAV 129
+ SWN +++ + V + + L LF + D V + T +L+ C+ SG V
Sbjct: 105 LVSWNSILAAYAQSSECVVENIQQAFL-LFRILRQDVVYTSRMTLSPMLKLCLHSGYVWA 163
Query: 130 QCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGF 189
HG G G ++ L+++Y K G + K +F + ++D V W M+ +
Sbjct: 164 S--ESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAY 221
Query: 190 SQNGYEREAILLFCQMHILGTVPTPYA------ISSALSACTKIELFEIGEQFHGLIFKW 243
+ G++ EAI L H G P IS S +++ F G +
Sbjct: 222 LEMGFKEEAIDLSSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSV---- 277
Query: 244 GFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELF 303
SE N ++ Y SG ++ + F+ M + D
Sbjct: 278 ---SEIIFRNKGLSEYLHSGQYSALLKCFADMVESD------------------------ 310
Query: 304 EKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKC 363
++C D VT +++ V + G+Q+H A+K+G+ + V S++++Y K
Sbjct: 311 ----VEC---DQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKL 363
Query: 364 SDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTIL 423
A F +++ WN ++ Q E+ +F Q+ GL P+QYT ++L
Sbjct: 364 RKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVL 423
Query: 424 RTCTSLG-ALSLGEQIHTQLGNLNTAQ---------------------EILRRLPEDDVV 461
+ +SL LSL +Q+H +N EIL D+V
Sbjct: 424 KAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHNFDLV 483
Query: 462 SWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQS 521
+W AM+ G+ Q + L+LF M QG +SD+ ++ C + A+NQG+Q+HA +
Sbjct: 484 AWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYA 543
Query: 522 YISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGAL 581
SG+ DL + + ++ +Y +CG + A F+ I D+++W +ISG ++G E A
Sbjct: 544 IKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAF 603
Query: 582 QVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLY 641
VFSQM +GV + +T ++ A++ L ++QG+Q+HA +K ++ SL+ +Y
Sbjct: 604 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDMY 663
Query: 642 AKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFV 701
AKCGSIDDA F + N +WNAM+ G +QHG E + LF++MK + P+ VTF+
Sbjct: 664 AKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGIKPDKVTFI 723
Query: 702 GVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPI 761
GVLSACSH GLV+E ++ SM +YG+ P+ EHY+C+ D LGRAG + +A E M +
Sbjct: 724 GVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLVKQAENLIESMSM 783
Query: 762 EPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821
E A ++RTLL+ACRV + E G+ A LLELEP DS+ YVLLSN+YAAA KWD
Sbjct: 784 EASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLA 843
Query: 822 RQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGR 881
R +MK VKK+PG SWIEVKN IH F V DR + + IY + ++ R + + GYV
Sbjct: 844 RTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPET 903
Query: 882 YSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKI 941
D+E+E+K+ +Y HSEKLA+AFGLLS S PI VIKNLRVC DCHN +K+++K+
Sbjct: 904 DFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKV 963
Query: 942 SNRTIVVRDANRFHHFEGGVCSCRDYW 968
NR IV+RDANRFH F+ G+CSC DYW
Sbjct: 964 YNREIVLRDANRFHRFKDGICSCGDYW 990
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 574 bits (1480), Expect = e-162, Method: Compositional matrix adjust.
Identities = 293/785 (37%), Positives = 469/785 (59%), Gaps = 34/785 (4%)
Query: 218 SSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ- 276
SS L +C + F +G+ H + ++ ++ + N+L++LYS+SG+ AE +F M+
Sbjct: 66 SSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRR 125
Query: 277 --QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTG 334
+RD V+++++++ G A+++F + L P+ +++ AC++ G
Sbjct: 126 FGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVG 185
Query: 335 EQLHSYAIKVG-ISKDIIVEGSMLDLYVKCSD-VETAYKFFLTTETENVVLWNVMLVAYG 392
+ +K G D+ V S++D++VK + E AYK F NVV W +M+
Sbjct: 186 RVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCM 245
Query: 393 QLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL---------- 442
Q+ E+ + F M G +++T ++ C L LSLG+Q+H+
Sbjct: 246 QMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVE 305
Query: 443 -------------GNLNTAQEILRRLPEDDVVSWTAMIVGFVQH-GMFGEALELFEEMEN 488
G+++ +++ R+ + V+SWTA+I G++++ + EA+ LF EM
Sbjct: 306 CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMIT 365
Query: 489 QG-IQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQ 547
QG ++ ++ FSSA AC + G+Q+ Q++ G + + S+ N++IS++ + R++
Sbjct: 366 QGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRME 425
Query: 548 EAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAA 607
+A F + K+ +S+N + G ++ E A ++ S++T+ + + +TF S++S A
Sbjct: 426 DAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVA 485
Query: 608 NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNA 667
N+ +I++G+Q+H+ ++K G N+LI++Y+KCGSID A R F M +N +SW +
Sbjct: 486 NVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTS 545
Query: 668 MITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEY 727
MITGF++HG+A+ + F +M + V PN VT+V +LSACSHVGLV+EG R+F SM ++
Sbjct: 546 MITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDH 605
Query: 728 GLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYA 787
+ PK EHYAC+VDLL RAG L+ A EF MP + D +VWRT L ACRVH N E+G+ A
Sbjct: 606 KIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLA 665
Query: 788 ANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHA 847
A +LEL+P + A Y+ LSNIYA AGKW+ ++R+ MK+R + KE G SWIEV + IH
Sbjct: 666 ARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHK 725
Query: 848 FFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGR----YSLWSDLEQEQKDPCVYIHSEK 903
F+VGD HP A +IYD L L + GYV + L + ++ +K+ +Y HSEK
Sbjct: 726 FYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEK 785
Query: 904 LAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCS 963
+A+AFGL+S S S P+ V KNLRVC DCHN +K++S +S R IV+RD NRFHHF+ G CS
Sbjct: 786 IAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCS 845
Query: 964 CRDYW 968
C DYW
Sbjct: 846 CNDYW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 573 bits (1478), Expect = e-162, Method: Compositional matrix adjust.
Identities = 317/874 (36%), Positives = 494/874 (56%), Gaps = 27/874 (3%)
Query: 119 RACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKD 178
RA S N+ + +IH L+IS G S S LID Y+ S+ VF +
Sbjct: 12 RALSSSSNL--NELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK 69
Query: 179 SVS-WVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFH 237
+V W ++I FS+NG EA+ + ++ P Y S + AC + E+G+ +
Sbjct: 70 NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVY 129
Query: 238 GLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSD 297
I GF S+ FV NALV +YSR G LT A Q+F +M RD V++NSLISG + GY +
Sbjct: 130 EQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYE 189
Query: 298 KALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSML 357
+ALE++ +++ + PD TV+S++ A ++ + G+ LH +A+K G++ ++V ++
Sbjct: 190 EALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLV 249
Query: 358 DLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQY 417
+Y+K A + F + + V +N M+ Y +L + ES ++F + + P+
Sbjct: 250 AMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLE-NLDQFKPDLL 308
Query: 418 TYPTILRTCTSLGALSLGEQIHTQL----------------------GNLNTAQEILRRL 455
T ++LR C L LSL + I+ + G++ TA+++ +
Sbjct: 309 TVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSM 368
Query: 456 PEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGR 515
D VSW ++I G++Q G EA++LF+ M Q+D+I + IS + L G+
Sbjct: 369 ECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGK 428
Query: 516 QIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSG 575
+H+ SG DLS+ NALI +YA+CG + ++ +F+ + D ++WN +IS + G
Sbjct: 429 GLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFG 488
Query: 576 YCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASN 635
LQV +QM + V ++ TF + A+LA + GK++H +++ GY+SE + N
Sbjct: 489 DFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGN 548
Query: 636 SLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP 695
+LI +Y+KCG ++++ R F M ++ V+W MI + +G +A+ F M+K ++P
Sbjct: 549 ALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVP 608
Query: 696 NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755
+ V F+ ++ ACSH GLV+EGL FE M T Y + P EHYACVVDLL R+ +S+A EF
Sbjct: 609 DSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEF 668
Query: 756 TEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKW 815
+ MPI+PDA +W ++L ACR +ME E + ++EL P+D +L SN YAA KW
Sbjct: 669 IQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKW 728
Query: 816 DCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEI 875
D IR+ +KD+ + K PG SWIEV ++H F GD P ++ IY L L +A+
Sbjct: 729 DKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKE 788
Query: 876 GYVQGRYSLWSDL-EQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNW 934
GY+ + +L E+E+K + HSE+LAIAFGLL+ P+ V+KNLRVC DCH
Sbjct: 789 GYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEV 848
Query: 935 IKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
K +SKI R I+VRDANRFH F+ G CSC+D W
Sbjct: 849 TKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 546 bits (1406), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/723 (39%), Positives = 413/723 (57%), Gaps = 56/723 (7%)
Query: 250 FVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLD 309
F N L+ YS++G ++ E F K+ RDGVT+N LI G + G A++ + M D
Sbjct: 73 FSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRD 132
Query: 310 -CLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVET 368
VT+ +++ +S G G+Q+H IK+G ++V +L +Y +
Sbjct: 133 FSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISD 192
Query: 369 AYKFFLTTETENVVLWNVM---LVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRT 425
A K F + N V++N + L+A G + D + Q+F+ M
Sbjct: 193 AKKVFYGLDDRNTVMYNSLMGGLLACGMIED---ALQLFRGM------------------ 231
Query: 426 CTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEE 485
E D VSW AMI G Q+G+ EA+E F E
Sbjct: 232 -------------------------------EKDSVSWAAMIKGLAQNGLAKEAIECFRE 260
Query: 486 MENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGR 545
M+ QG++ D F S + AC G+ A+N+G+QIHA + F D + +G+ALI +Y +C
Sbjct: 261 MKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKC 320
Query: 546 IQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA 605
+ A VF+++ K+ +SW ++ G+ Q+G E A+++F M + G+ + YT G +SA
Sbjct: 321 LHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISA 380
Query: 606 AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSW 665
AN++++++G Q H I +G SNSL+TLY KCG IDD+ R F EM ++ VSW
Sbjct: 381 CANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSW 440
Query: 666 NAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMST 725
AM++ ++Q G A+E I LF+KM +H + P+ VT GV+SACS GLV +G RYF+ M++
Sbjct: 441 TAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTS 500
Query: 726 EYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGE 785
EYG+VP HY+C++DL R+G L A F MP PDA+ W TLLSACR N+EIG+
Sbjct: 501 EYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGK 560
Query: 786 YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSI 845
+AA L+EL+P A Y LLS+IYA+ GKWD Q+R+ M+++ VKKEPGQSWI+ K +
Sbjct: 561 WAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKL 620
Query: 846 HAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLA 905
H+F D P D+IY L LN ++ + GY + D+E+ K + HSE+LA
Sbjct: 621 HSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLA 680
Query: 906 IAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCR 965
IAFGL+ + PI V KNLRVC DCHN K +S ++ R I+VRDA RFH F+ G CSC
Sbjct: 681 IAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCG 740
Query: 966 DYW 968
D+W
Sbjct: 741 DFW 743
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust.
Identities = 285/827 (34%), Positives = 475/827 (57%), Gaps = 41/827 (4%)
Query: 182 WVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIF 241
W+ ++ ++ REA+L + M +LG P YA + L A ++ E+G+Q H ++
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVY 124
Query: 242 KWGFSSETF-VCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKAL 300
K+G+ ++ V N LV LY + G+ + ++F ++ +R+ V++NSLIS L + AL
Sbjct: 125 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 184
Query: 301 ELFEKMQLDCLKPDCVTVASLVSACASVG---AFRTGEQLHSYAIKVGISKDIIVEGSML 357
E F M + ++P T+ S+V+AC+++ G+Q+H+Y ++ G I+ +++
Sbjct: 185 EAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFII-NTLV 243
Query: 358 DLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQY 417
+Y K + ++ + ++V WN +L + Q L E+ + ++M EG+ P+++
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303
Query: 418 TYPTILRTCTSLGALSLGEQIHT---QLGNLN--------------------TAQEILRR 454
T ++L C+ L L G+++H + G+L+ + + +
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDG 363
Query: 455 LPEDDVVSWTAMIVGFVQHGMFGEALELFEEME-NQGIQSDNIGFSSAISACAGIQALNQ 513
+ + + W AMI G+ Q+ EAL LF ME + G+ +++ + + AC A ++
Sbjct: 364 MFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR 423
Query: 514 GRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQ 573
IH G D + N L+ +Y+R G+I A +F K++ +D ++WN +I+G+
Sbjct: 424 KEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVF 483
Query: 574 SGYCEGALQVFSQM-----------TQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMI 622
S + E AL + +M ++V ++ N T +++ + A L+ + +GK++HA
Sbjct: 484 SEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYA 543
Query: 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAI 682
IK ++ ++L+ +YAKCG + +++ F ++P+KN ++WN +I + HG EAI
Sbjct: 544 IKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAI 603
Query: 683 NLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742
+L M V PN VTF+ V +ACSH G+V+EGLR F M +YG+ P +HYACVVDL
Sbjct: 604 DLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDL 663
Query: 743 LGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801
LGRAG + A + MP + + A W +LL A R+H N+EIGE AA +L++LEP ++
Sbjct: 664 LGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASH 723
Query: 802 YVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKI 861
YVLL+NIY++AG WD ++R+ MK++GV+KEPG SWIE + +H F GD HP ++K+
Sbjct: 724 YVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKL 783
Query: 862 YDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILV 921
YL L R+ + GYV + ++E+++K+ + HSEKLAIAFG+L+ S I V
Sbjct: 784 SGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRV 843
Query: 922 IKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
KNLRVCNDCH KF+SKI +R I++RD RFH F+ G CSC DYW
Sbjct: 844 AKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 543 bits (1399), Expect = e-153, Method: Compositional matrix adjust.
Identities = 299/866 (34%), Positives = 481/866 (55%), Gaps = 31/866 (3%)
Query: 134 QIHGLII-SHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQN 192
+IH L+ S ++ +I +YA G D ++ VF+ L K+ W A+IS +S+N
Sbjct: 105 KIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRN 164
Query: 193 GYEREAILLFCQM-HILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFV 251
E + F +M +P + + AC + IG HGL+ K G + FV
Sbjct: 165 ELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFV 224
Query: 252 CNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLD-- 309
NALV+ Y G +T A Q+F M +R+ V++NS+I + G+S+++ L +M +
Sbjct: 225 GNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENG 284
Query: 310 --CLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVE 367
PD T+ +++ CA G+ +H +A+K+ + K++++ +++D+Y KC +
Sbjct: 285 DGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCIT 344
Query: 368 TAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQT--EGLTPNQYT------- 418
A F +NVV WN M+ + D +F + +QM E + ++ T
Sbjct: 345 NAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPV 404
Query: 419 --YPTILRTCTSLGALSLGEQI-------------HTQLGNLNTAQEILRRLPEDDVVSW 463
+ + L + L SL ++ + + G+L+ AQ + + V SW
Sbjct: 405 CFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSW 464
Query: 464 TAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYI 523
A+I G Q +L+ +M+ G+ D+ S +SAC+ +++L G+++H
Sbjct: 465 NALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIR 524
Query: 524 SGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQV 583
+ DL + +++SLY CG + +F+ ++ K +SWN +I+G+ Q+G+ + AL V
Sbjct: 525 NWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGV 584
Query: 584 FSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAK 643
F QM G+Q + V A + L +++ G++ HA +K + + + SLI +YAK
Sbjct: 585 FRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAK 644
Query: 644 CGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGV 703
GSI + + F + EK+ SWNAMI G+ HG A EAI LFE+M++ P+ +TF+GV
Sbjct: 645 NGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGV 704
Query: 704 LSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA-REFTEQMPIE 762
L+AC+H GL++EGLRY + M + +GL P +HYACV+D+LGRAG L +A R E+M E
Sbjct: 705 LTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEE 764
Query: 763 PDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIR 822
D +W++LLS+CR+H+N+E+GE A L ELEPE YVLLSN+YA GKW+ ++R
Sbjct: 765 ADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVR 824
Query: 823 QIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRY 882
Q M + ++K+ G SWIE+ + +F VG+R ++I L +++++GY
Sbjct: 825 QRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTM 884
Query: 883 SLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKIS 942
S+ DL +E+K + HSEKLA+ +GL+ S+ I V KNLR+C DCHN K +SK+
Sbjct: 885 SVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVM 944
Query: 943 NRTIVVRDANRFHHFEGGVCSCRDYW 968
R IVVRD RFHHF+ GVCSC DYW
Sbjct: 945 EREIVVRDNKRFHHFKNGVCSCGDYW 970
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 280/757 (36%), Positives = 432/757 (57%), Gaps = 23/757 (3%)
Query: 234 EQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQC 293
Q L+FK G E F LV+L+ R G++ A ++F + + V Y++++ G A+
Sbjct: 54 RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113
Query: 294 GYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVE 353
DKAL+ F +M+ D ++P L+ C R G+++H +K G S D+
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAM 173
Query: 354 GSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLT 413
+ ++Y KC V A K F ++V WN ++ Y Q + ++ K M E L
Sbjct: 174 TGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLK 233
Query: 414 PNQYTYPTILRTCTSLGALSLGEQIH----------------------TQLGNLNTAQEI 451
P+ T ++L ++L +S+G++IH + G+L TA+++
Sbjct: 234 PSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQL 293
Query: 452 LRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQAL 511
+ E +VVSW +MI +VQ+ EA+ +F++M ++G++ ++ A+ ACA + L
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDL 353
Query: 512 NQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGF 571
+GR IH S G ++S+ N+LIS+Y +C + A +F K+ ++ +SWN +I GF
Sbjct: 354 ERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGF 413
Query: 572 AQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSET 631
AQ+G AL FSQM V+ + +T+ SV++A A L+ K +H +++++ D
Sbjct: 414 AQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNV 473
Query: 632 EASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKH 691
+ +L+ +YAKCG+I A+ F M E++ +WNAMI G+ HG+ A+ LFE+M+K
Sbjct: 474 FVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKG 533
Query: 692 DVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSR 751
+ PN VTF+ V+SACSH GLV GL+ F M Y + +HY +VDLLGRAG L+
Sbjct: 534 TIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNE 593
Query: 752 AREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811
A +F QMP++P V+ +L AC++HKN+ E AA L EL P+D +VLL+NIY A
Sbjct: 594 AWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRA 653
Query: 812 AGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRR 871
A W+ Q+R M +G++K PG S +E+KN +H+FF G HP + KIY +L L
Sbjct: 654 ASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICH 713
Query: 872 VAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDC 931
+ E GYV +L +E + K+ + HSEKLAI+FGLL+ + I V KNLRVC DC
Sbjct: 714 IKEAGYVPDT-NLVLGVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADC 772
Query: 932 HNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
HN K++S ++ R IVVRD RFHHF+ G CSC DYW
Sbjct: 773 HNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 968 | ||||||
| 359482115 | 989 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.977 | 0.744 | 0.0 | |
| 224123788 | 989 | predicted protein [Populus trichocarpa] | 0.998 | 0.977 | 0.715 | 0.0 | |
| 356502293 | 1047 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.923 | 0.674 | 0.0 | |
| 449448586 | 1037 | PREDICTED: pentatricopeptide repeat-cont | 0.998 | 0.932 | 0.670 | 0.0 | |
| 449497733 | 1037 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.998 | 0.932 | 0.668 | 0.0 | |
| 297800922 | 1047 | pentatricopeptide repeat-containing prot | 0.998 | 0.923 | 0.618 | 0.0 | |
| 4455294 | 1024 | putative protein [Arabidopsis thaliana] | 0.998 | 0.944 | 0.609 | 0.0 | |
| 42566761 | 1064 | pentatricopeptide repeat-containing prot | 0.998 | 0.908 | 0.609 | 0.0 | |
| 357497455 | 999 | Pentatricopeptide repeat-containing prot | 0.935 | 0.906 | 0.628 | 0.0 | |
| 357133320 | 919 | PREDICTED: pentatricopeptide repeat-cont | 0.926 | 0.976 | 0.573 | 0.0 |
| >gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1550 bits (4012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 737/990 (74%), Positives = 839/990 (84%), Gaps = 23/990 (2%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60
MEERGI+AN QT++WL EGC + GSLL+AKK+H +I K GFDGE VL + +IYL G+
Sbjct: 1 MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60
Query: 61 LDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRA 120
+D+A+K+FDD+ V WNK+ISG +AKKL+ +VLGLF MI ++V P+E+TF VLRA
Sbjct: 61 VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120
Query: 121 CIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSV 180
C G G Q QIH II HGFG SPL+ NPLIDLY+KNG +D AK VF L KDSV
Sbjct: 121 CSG-GKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV 179
Query: 181 SWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240
SWVAMISG SQNG E EAILLFCQMH +PTPY SS LSACTKIELF++GEQ HG I
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239
Query: 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKAL 300
KWG SSETFVCNALVTLYSR GNL +AEQIFSKM +RD ++YNSLISGLAQ G+SD+AL
Sbjct: 240 VKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRAL 299
Query: 301 ELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLY 360
+LFEKMQLDC+KPDCVTVASL+SACASVGA G+QLHSY IK+G+S D+I+EGS+LDLY
Sbjct: 300 QLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLY 359
Query: 361 VKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYP 420
VKC D+ETA+++FLTTETENVVLWNVMLVAYGQL +LSES+ IF QMQ EGL PNQYTYP
Sbjct: 360 VKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYP 419
Query: 421 TILRTCTSLGALSLGEQIHTQL----------------------GNLNTAQEILRRLPED 458
+ILRTCTSLGAL LGEQIHTQ+ G L+TA+ IL+RL E+
Sbjct: 420 SILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREE 479
Query: 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518
DVVSWTAMI G+ QH +F EAL+LF+EMENQGI+SDNIGFSSAISACAGIQALNQG+QIH
Sbjct: 480 DVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIH 539
Query: 519 AQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCE 578
AQSYISG+S+DLSIGNAL+SLYARCGR Q+AYL F KIDAKDNISWN LISGFAQSG+CE
Sbjct: 540 AQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCE 599
Query: 579 GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI 638
ALQVFSQM Q GV+ANL+TFGS VSA AN ANIKQGKQ+HAM+IKTGYDSETEASN LI
Sbjct: 600 EALQVFSQMNQAGVEANLFTFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLI 659
Query: 639 TLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698
TLY+KCGSI+DAKREF EMPEKN VSWNAMITG+SQHGY EA++LFE+MK+ +MPNHV
Sbjct: 660 TLYSKCGSIEDAKREFFEMPEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHV 719
Query: 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758
TFVGVLSACSHVGLVNEGL YF SMS E+GLVPKPEHY CVVDLLGRA L AREF E+
Sbjct: 720 TFVGVLSACSHVGLVNEGLSYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEE 779
Query: 759 MPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818
MPIEPDAM+WRTLLSAC VHKN+EIGE+AA HLLELEPEDSATYVLLSN+YA +GKWD R
Sbjct: 780 MPIEPDAMIWRTLLSACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYR 839
Query: 819 DQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYV 878
D+ RQ+MKDRGVKKEPG+SWIEVKNSIHAFFVGDRLHPLA++IY+Y+ +LN R EIGYV
Sbjct: 840 DRTRQMMKDRGVKKEPGRSWIEVKNSIHAFFVGDRLHPLAEQIYEYIDDLNERAGEIGYV 899
Query: 879 QGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFV 938
Q RY+L +D+EQEQKDP YIHSEKLA+AFGLLSL+++MPI VIKNLRVCNDCHNWIKFV
Sbjct: 900 QDRYNLLNDVEQEQKDPTAYIHSEKLAVAFGLLSLTNTMPIRVIKNLRVCNDCHNWIKFV 959
Query: 939 SKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
SKISNR IVVRDA RFHHFEGGVCSC+DYW
Sbjct: 960 SKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa] gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1499 bits (3881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 708/990 (71%), Positives = 830/990 (83%), Gaps = 23/990 (2%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60
ME RGI AN QT++WLL+ CL+ GSL+E KK+HGKILKLGF E VLC+K ++Y GD
Sbjct: 1 MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60
Query: 61 LDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRA 120
LD +K+F+DM R+V SW+K+ISGF+ KK+S RVL LF MI+++V P E +F VLRA
Sbjct: 61 LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120
Query: 121 CIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSV 180
C G + ++ QIH II HG SP+ISNPLI LYAKNG I SA+KVF+NLC KDSV
Sbjct: 121 CSGH-RIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSV 179
Query: 181 SWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240
SWVAMISGFSQNGYE EAI LFC+MH G PTPY SS LS CTKI+LF++GEQ H L+
Sbjct: 180 SWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALV 239
Query: 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKAL 300
FK+G S ET+VCNALVTLYSR N SAE++FSKMQ +D V++NSLISGLAQ G+SD AL
Sbjct: 240 FKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGAL 299
Query: 301 ELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLY 360
ELF KM+ D LKPDCVTVASL+SACAS GA GEQLHSY IK GIS D+IVEG++LDLY
Sbjct: 300 ELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLY 359
Query: 361 VKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYP 420
V CSD++TA++ FLT +TENVVLWNVMLVA+G+L++LSESF+IF+QMQ +GL PNQ+TYP
Sbjct: 360 VNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYP 419
Query: 421 TILRTCTSLGALSLGEQIHTQL----------------------GNLNTAQEILRRLPED 458
+ILRTCTS+GAL LGEQIHTQ+ G L+TA ILR L ED
Sbjct: 420 SILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTED 479
Query: 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518
DVVSWTA+I G+ QH +F EAL+ F+EM N+GIQSDNIGFSSAISACAGIQALNQGRQIH
Sbjct: 480 DVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIH 539
Query: 519 AQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCE 578
AQSY+SG+S+DLSIGNAL+SLYARCGRI+EAYL F KIDAKD+ISWNGLISGFAQSGYCE
Sbjct: 540 AQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCE 599
Query: 579 GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI 638
AL+VF+QM + ++A+ +TFGS VSAAAN+ANIKQGKQ+HAMIIK G+DS+ E SN+LI
Sbjct: 600 DALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALI 659
Query: 639 TLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698
T YAKCGSI+DA+REF EMPEKN+VSWNAMITG+SQHGY EA+NLFEKMK+ MPNHV
Sbjct: 660 TFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHV 719
Query: 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758
TFVGVLSACSHVGLV +GL YFESMS E+GLVPKP HYACVVDL+ RAG LSRAR+F E+
Sbjct: 720 TFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEE 779
Query: 759 MPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818
MPIEPDA +WRTLLSAC VHKN+E+GE+AA HLLELEPEDSATYVLLSN+YA +GKWDCR
Sbjct: 780 MPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCR 839
Query: 819 DQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYV 878
DQ RQ+M++RGVKKEPG+SWIEVKNS+HAF+VGDRLHPLADKIY++L LN++ AEIGY
Sbjct: 840 DQTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYF 899
Query: 879 QGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFV 938
Q RYSL +D+EQEQKDP VYIHSEKLAI FGLLSLSD++PI V+KNLRVC DCH+WIKFV
Sbjct: 900 QDRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFV 959
Query: 939 SKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
SKISNR I+VRDA RFHHFEGG+CSC+DYW
Sbjct: 960 SKISNRAIIVRDAYRFHHFEGGICSCKDYW 989
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1399 bits (3622), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 668/990 (67%), Positives = 809/990 (81%), Gaps = 23/990 (2%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60
MEERG++ANSQT++WLL+GCLS G + K+HGKILK+GF E VLC++ ++Y+ GD
Sbjct: 59 MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGD 118
Query: 61 LDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRA 120
LD A+ +FD+M R + WNK++ FVA K++GRVLGLF +M+ + V P+E T+ GVLR
Sbjct: 119 LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRG 178
Query: 121 CIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSV 180
C G G+V CV +IH I+HG+ S + NPLIDLY KNGF++SAKKVF+ L +DSV
Sbjct: 179 C-GGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSV 237
Query: 181 SWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240
SWVAM+SG SQ+G E EA+LLFCQMH G PTPY SS LSACTK+E +++GEQ HGL+
Sbjct: 238 SWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLV 297
Query: 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKAL 300
K GFS ET+VCNALVTLYSR GN AEQ+F+ M QRD V+YNSLISGL+Q GYSDKAL
Sbjct: 298 LKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKAL 357
Query: 301 ELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLY 360
ELF+KM LDCLKPDCVTVASL+SAC+SVGA G+Q HSYAIK G+S DII+EG++LDLY
Sbjct: 358 ELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLY 417
Query: 361 VKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYP 420
VKCSD++TA++FFL+TETENVVLWNVMLVAYG L++L+ESF+IF QMQ EG+ PNQ+TYP
Sbjct: 418 VKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYP 477
Query: 421 TILRTCTSLGALSLGEQIHTQ----------------------LGNLNTAQEILRRLPED 458
+ILRTC+SL A+ LGEQIHTQ LG L+ A +I RRL E
Sbjct: 478 SILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEK 537
Query: 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518
DVVSWTAMI G+ QH F EAL LF+EM++QGI SDNIGF+SAISACAGIQALNQG+QIH
Sbjct: 538 DVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIH 597
Query: 519 AQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCE 578
AQ+ +SG+SDDLS+GNAL+SLYARCG++++AY F+KI +KDNISWN LISGFAQSG+CE
Sbjct: 598 AQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCE 657
Query: 579 GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI 638
AL +FSQM++ G + N +TFG VSAAAN+AN+K GKQ+HAMIIKTG+DSETE SN LI
Sbjct: 658 EALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLI 717
Query: 639 TLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698
TLYAKCG+IDDA+R+F EMPEKNE+SWNAM+TG+SQHG+ +A++LFE MK+ V+PNHV
Sbjct: 718 TLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHV 777
Query: 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758
TFVGVLSACSHVGLV+EG++YF+SM +GLVPKPEHYACVVDLLGR+G LSRAR F E+
Sbjct: 778 TFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEE 837
Query: 759 MPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818
MPI+PDAMV RTLLSAC VHKN++IGE+AA+HLLELEP+DSATYVLLSN+YA GKW CR
Sbjct: 838 MPIQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCR 897
Query: 819 DQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYV 878
D+ RQ+MKDRGVKKEPG+SWIEV NS+HAFF GD+ HP DKIY+YL +LN AE GY+
Sbjct: 898 DRTRQMMKDRGVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYI 957
Query: 879 QGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFV 938
SL +D E+ QK P IHSEKLAIAFGLLSLS S PI V KNLRVC DCHNWIK+V
Sbjct: 958 PQTNSLLNDAERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYV 1017
Query: 939 SKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
SKIS+R IVVRD+ RFHHF+GG+CSC+DYW
Sbjct: 1018 SKISDRVIVVRDSYRFHHFKGGICSCKDYW 1047
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1382 bits (3578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 664/990 (67%), Positives = 799/990 (80%), Gaps = 23/990 (2%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60
MEERG+++N Q ++WLLEGCL+ GSL E ++H +I K GFDGE +L D + Y GD
Sbjct: 49 MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108
Query: 61 LDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRA 120
A+K+FD+ S R+VFSWNK+I FVA+K + +V LF +M+ + + PN TF GVL+A
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168
Query: 121 CIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSV 180
C+G G++A V Q+H +GF SPL++N LIDLY+KNG+I+SAKKVFN +C KD V
Sbjct: 169 CVG-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIV 227
Query: 181 SWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240
+WVAMISG SQNG E EAILLFC MH PTPY +SS LSA TKI+LFE+GEQ H L+
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287
Query: 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKAL 300
KWGF SET+VCN LV LYSRS L SAE+IFS M RDGV+YNSLISGL Q G+SD+AL
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347
Query: 301 ELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLY 360
ELF KMQ DCLKPDC+TVASL+SACASVGA G QLHS+AIK G+S DII+EGS+LDLY
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLY 407
Query: 361 VKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYP 420
KC+DVETA+KFFLTTETEN+VLWNVMLVAYGQL++LS+SF+IF+QMQ EG+ PNQ+TYP
Sbjct: 408 SKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYP 467
Query: 421 TILRTCTSLGALSLGEQIHTQL----------------------GNLNTAQEILRRLPED 458
+ILRTCTSLGAL LGEQIHT + G L A ILRRLPED
Sbjct: 468 SILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPED 527
Query: 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518
DVVSWTAMI G+VQH MF EAL+LFEEME +GIQ DNIGF+SAISACAGI+AL QG+QIH
Sbjct: 528 DVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIH 587
Query: 519 AQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCE 578
AQSY +GF DLSI NALISLYARCGRIQEAYL F KI K+NISWN L+SG AQSGY E
Sbjct: 588 AQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFE 647
Query: 579 GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI 638
ALQVF +M + + N++T+GS +SAAA+LANIKQG+Q+H+M++KTGYDSE E SNSLI
Sbjct: 648 EALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLI 707
Query: 639 TLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698
+LYAK GSI DA REF +M E+N +SWNAMITG+SQHG +EA+ LFE+MK +MPNHV
Sbjct: 708 SLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHV 767
Query: 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758
TFVGVLSACSH+GLV EGL YFESM + LVPK EHY CVVDLLGRAG L RA E+ ++
Sbjct: 768 TFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKE 827
Query: 759 MPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818
MPI DAM+WRTLLSAC +HKN+EIGE AA+HLLELEPEDSATYVL+SNIYA + +W R
Sbjct: 828 MPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHR 887
Query: 819 DQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYV 878
D R++MKDRGVKKEPG+SWIEVKN++HAF+ GD+LHPL ++IY+Y+G+LNRR +EIGYV
Sbjct: 888 DWSRKLMKDRGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYV 947
Query: 879 QGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFV 938
Q +SL ++ EQ QKDP ++HSEKLAIAFGLLSL +++PI V+KNLRVCNDCHNWIK+V
Sbjct: 948 QDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYV 1007
Query: 939 SKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
SKISNR+I+VRDA+RFHHF+GGVCSC+D+W
Sbjct: 1008 SKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g13650-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1377 bits (3565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/990 (66%), Positives = 797/990 (80%), Gaps = 23/990 (2%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60
MEERG+++N Q ++WLLEGCL+ GSL E ++H +I K GFDGE +L D + Y GD
Sbjct: 49 MEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGD 108
Query: 61 LDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRA 120
A+K+FD+ S R+VFSWNK+I FVA+K + +V LF +M+ + + PN TF GVL+A
Sbjct: 109 QHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA 168
Query: 121 CIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSV 180
C+G G++A V Q+H +GF SPL++N LIDLY+KNG+I+SAKKVFN +C KD V
Sbjct: 169 CVG-GDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIV 227
Query: 181 SWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240
+WVAMISG SQNG E EAILLFC MH PTPY +SS LSA TKI+LFE+GEQ H L+
Sbjct: 228 TWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLV 287
Query: 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKAL 300
KWGF SET+VCN LV LYSRS L SAE+IFS M RDGV+YNSLISGL Q G+SD+AL
Sbjct: 288 IKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRAL 347
Query: 301 ELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLY 360
ELF KMQ DCLKPDC+TVASL+SACASVGA G QLHS+AIK G+S DII+EGS+LDLY
Sbjct: 348 ELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLY 407
Query: 361 VKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYP 420
KC+DVETA+KFFL TETEN+VLWNVMLVAYGQL++LS+SF+IF+QMQ EG+ PNQ+TYP
Sbjct: 408 SKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYP 467
Query: 421 TILRTCTSLGALSLGEQIHTQL----------------------GNLNTAQEILRRLPED 458
+ILRTCTSLGAL LGEQIHT + G L A ILRRLPED
Sbjct: 468 SILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPED 527
Query: 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518
DVVSWTAMI G+VQH MF EAL+LFEEME +GIQ DNIGF+SAISACAGI+AL QG+QIH
Sbjct: 528 DVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIH 587
Query: 519 AQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCE 578
AQSY +GF DLSI NALISLYARCGRIQEAYL F KI K+NISWN L+SG AQSGY E
Sbjct: 588 AQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFE 647
Query: 579 GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI 638
ALQVF +M + + N++T+GS +SAAA+LANIKQG+Q+H+M++KTGYDSE E SNSLI
Sbjct: 648 EALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLI 707
Query: 639 TLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698
+LYAK GSI DA REF +M E+N +SWNAMITG+SQHG +EA+ LFE+MK +MPNHV
Sbjct: 708 SLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHV 767
Query: 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758
TFVGVLSACSH+GLV EGL YFESM + LVPK EHY CVVDLLGRAG L RA E+ ++
Sbjct: 768 TFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKE 827
Query: 759 MPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818
MPI DAM+WRTLLSAC +HKN+EIGE AA+HLLELEPEDSATYVL+SNIYA + +W R
Sbjct: 828 MPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHR 887
Query: 819 DQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYV 878
D R++MKD GVKKEPG+SWIEVKN++HAF+ GD+LHPL ++IY+Y+G+LNRR +EIGYV
Sbjct: 888 DWSRKLMKDXGVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYV 947
Query: 879 QGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFV 938
Q +SL ++ EQ QKDP ++HSEKLAIAFGLLSL +++PI V+KNLRVCNDCHNWIK+V
Sbjct: 948 QDSFSLLNESEQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYV 1007
Query: 939 SKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
SKISNR+I+VRDA+RFHHF+GGVCSC+D+W
Sbjct: 1008 SKISNRSIIVRDAHRFHHFDGGVCSCKDFW 1037
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1305 bits (3378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 613/991 (61%), Positives = 771/991 (77%), Gaps = 24/991 (2%)
Query: 1 MEERGIQANSQTFVWLLEGCL-SYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSG 59
+E GI+ N QT WLLEGCL + GSL E +K+H +ILKLGFD L +K + YL G
Sbjct: 58 VENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKG 117
Query: 60 DLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLR 119
DLD A+K+FD+M +RT+F+WNK+I ++ LSG+V LF +M++++V PNE TF GVL
Sbjct: 118 DLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLE 177
Query: 120 ACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDS 179
AC G G+VA V QIH II G G S ++ NPLIDLY++NGF+D A++VF+ L KD
Sbjct: 178 ACRG-GSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDH 236
Query: 180 VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGL 239
SWVAMISG S+N E EAI LFC M++LG +PTPYA SS LSAC KIE EIGEQ HGL
Sbjct: 237 SSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGL 296
Query: 240 IFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKA 299
+ K GFSS+T+VCNALV+LY G+L SAE IFS M QRD VTYN+LI+GL+QCGY +KA
Sbjct: 297 VLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 356
Query: 300 LELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDL 359
+ELF++MQLD L+PD T+ASLV AC+S G +G+QLH+Y K+G + + +EG++L+L
Sbjct: 357 MELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNL 416
Query: 360 YVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTY 419
Y KCSD+ETA +FL TE ENVVLWNVMLVAYG L+DL SF+IF+QMQ E + PNQYTY
Sbjct: 417 YAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 476
Query: 420 PTILRTCTSLGALSLGEQIHTQ----------------------LGNLNTAQEILRRLPE 457
P+IL+TC LG L LGEQIH+Q LG L+TA +IL R
Sbjct: 477 PSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG 536
Query: 458 DDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQI 517
DVVSWT MI G+ Q+ +AL F +M ++GI+SD +G ++A+SACAG+QAL +G+QI
Sbjct: 537 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 596
Query: 518 HAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYC 577
HAQ+ +SGFS DL NAL++LY++CG I+EAYL F + +A DNI+WN L+SGF QSG
Sbjct: 597 HAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNN 656
Query: 578 EGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSL 637
E AL+VF++M + G+ +N +TFGS V AA+ AN+KQGKQVHA+I KTGYDSETE N++
Sbjct: 657 EEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAI 716
Query: 638 ITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH 697
I++YAKCGSI DAK++FLE+ KNEVSWNAMI +S+HG+ EA++ F++M +V PNH
Sbjct: 717 ISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNH 776
Query: 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTE 757
VT VGVLSACSH+GLV++G+ YFESM+TEYGL PKPEHY CVVD+L RAG LSRA++F
Sbjct: 777 VTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFIL 836
Query: 758 QMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817
+MPIEPDA+VWRTLLSAC VHKNMEIGE+AA+HLLELEPEDSATYVLLSN+YA KWD
Sbjct: 837 EMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDA 896
Query: 818 RDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGY 877
RD RQ MK++GVKKEPGQSWIEVKNSIH+F+VGD+ HPLAD+I++Y +L +R +EIGY
Sbjct: 897 RDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGY 956
Query: 878 VQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKF 937
VQ +SL S+L+QEQKDP ++IHSEKLAI+FGLLSL +MPI V+KNLRVCNDCH+WIKF
Sbjct: 957 VQDCFSLLSELQQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKF 1016
Query: 938 VSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
VSK+SNR I+VRDA RFHHFEGG CSC+DYW
Sbjct: 1017 VSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1047
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana] gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/991 (60%), Positives = 765/991 (77%), Gaps = 24/991 (2%)
Query: 1 MEERGIQANSQTFVWLLEGCL-SYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSG 59
+E RGI+ N QT WLLEGCL + GSL E +K+H +ILKLG D L +K F+ YL G
Sbjct: 35 VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 94
Query: 60 DLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLR 119
DL A K+FD+M +RT+F+WNK+I ++ L G V GLF++M+ ++V PNE TF GVL
Sbjct: 95 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 154
Query: 120 ACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDS 179
AC G G+VA V QIH I+ G S ++ NPLIDLY++NGF+D A++VF+ L KD
Sbjct: 155 ACRG-GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDH 213
Query: 180 VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGL 239
SWVAMISG S+N E EAI LFC M++LG +PTPYA SS LSAC KIE EIGEQ HGL
Sbjct: 214 SSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGL 273
Query: 240 IFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKA 299
+ K GFSS+T+VCNALV+LY GNL SAE IFS M QRD VTYN+LI+GL+QCGY +KA
Sbjct: 274 VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 333
Query: 300 LELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDL 359
+ELF++M LD L+PD T+ASLV AC++ G G+QLH+Y K+G + + +EG++L+L
Sbjct: 334 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 393
Query: 360 YVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTY 419
Y KC+D+ETA +FL TE ENVVLWNVMLVAYG L+DL SF+IF+QMQ E + PNQYTY
Sbjct: 394 YAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 453
Query: 420 PTILRTCTSLGALSLGEQIHTQ----------------------LGNLNTAQEILRRLPE 457
P+IL+TC LG L LGEQIH+Q LG L+TA +IL R
Sbjct: 454 PSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG 513
Query: 458 DDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQI 517
DVVSWT MI G+ Q+ +AL F +M ++GI+SD +G ++A+SACAG+QAL +G+QI
Sbjct: 514 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 573
Query: 518 HAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYC 577
HAQ+ +SGFS DL NAL++LY+RCG+I+E+YL F + +A DNI+WN L+SGF QSG
Sbjct: 574 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 633
Query: 578 EGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSL 637
E AL+VF +M + G+ N +TFGS V AA+ AN+KQGKQVHA+I KTGYDSETE N+L
Sbjct: 634 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 693
Query: 638 ITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH 697
I++YAKCGSI DA+++FLE+ KNEVSWNA+I +S+HG+ EA++ F++M +V PNH
Sbjct: 694 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 753
Query: 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTE 757
VT VGVLSACSH+GLV++G+ YFESM++EYGL PKPEHY CVVD+L RAG LSRA+EF +
Sbjct: 754 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 813
Query: 758 QMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817
+MPI+PDA+VWRTLLSAC VHKNMEIGE+AA+HLLELEPEDSATYVLLSN+YA + KWD
Sbjct: 814 EMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDA 873
Query: 818 RDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGY 877
RD RQ MK++GVKKEPGQSWIEVKNSIH+F+VGD+ HPLAD+I++Y +L +R +EIGY
Sbjct: 874 RDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGY 933
Query: 878 VQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKF 937
VQ +SL ++L+ EQKDP ++IHSEKLAI+FGLLSL ++PI V+KNLRVCNDCH WIKF
Sbjct: 934 VQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKF 993
Query: 938 VSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
VSK+SNR I+VRDA RFHHFEGG CSC+DYW
Sbjct: 994 VSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1024
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1287 bits (3330), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 604/991 (60%), Positives = 765/991 (77%), Gaps = 24/991 (2%)
Query: 1 MEERGIQANSQTFVWLLEGCL-SYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSG 59
+E RGI+ N QT WLLEGCL + GSL E +K+H +ILKLG D L +K F+ YL G
Sbjct: 75 VENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKG 134
Query: 60 DLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLR 119
DL A K+FD+M +RT+F+WNK+I ++ L G V GLF++M+ ++V PNE TF GVL
Sbjct: 135 DLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLE 194
Query: 120 ACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDS 179
AC G G+VA V QIH I+ G S ++ NPLIDLY++NGF+D A++VF+ L KD
Sbjct: 195 ACRG-GSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDH 253
Query: 180 VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGL 239
SWVAMISG S+N E EAI LFC M++LG +PTPYA SS LSAC KIE EIGEQ HGL
Sbjct: 254 SSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGL 313
Query: 240 IFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKA 299
+ K GFSS+T+VCNALV+LY GNL SAE IFS M QRD VTYN+LI+GL+QCGY +KA
Sbjct: 314 VLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKA 373
Query: 300 LELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDL 359
+ELF++M LD L+PD T+ASLV AC++ G G+QLH+Y K+G + + +EG++L+L
Sbjct: 374 MELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNL 433
Query: 360 YVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTY 419
Y KC+D+ETA +FL TE ENVVLWNVMLVAYG L+DL SF+IF+QMQ E + PNQYTY
Sbjct: 434 YAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTY 493
Query: 420 PTILRTCTSLGALSLGEQIHTQ----------------------LGNLNTAQEILRRLPE 457
P+IL+TC LG L LGEQIH+Q LG L+TA +IL R
Sbjct: 494 PSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAG 553
Query: 458 DDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQI 517
DVVSWT MI G+ Q+ +AL F +M ++GI+SD +G ++A+SACAG+QAL +G+QI
Sbjct: 554 KDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQI 613
Query: 518 HAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYC 577
HAQ+ +SGFS DL NAL++LY+RCG+I+E+YL F + +A DNI+WN L+SGF QSG
Sbjct: 614 HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN 673
Query: 578 EGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSL 637
E AL+VF +M + G+ N +TFGS V AA+ AN+KQGKQVHA+I KTGYDSETE N+L
Sbjct: 674 EEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAL 733
Query: 638 ITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH 697
I++YAKCGSI DA+++FLE+ KNEVSWNA+I +S+HG+ EA++ F++M +V PNH
Sbjct: 734 ISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNH 793
Query: 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTE 757
VT VGVLSACSH+GLV++G+ YFESM++EYGL PKPEHY CVVD+L RAG LSRA+EF +
Sbjct: 794 VTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQ 853
Query: 758 QMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817
+MPI+PDA+VWRTLLSAC VHKNMEIGE+AA+HLLELEPEDSATYVLLSN+YA + KWD
Sbjct: 854 EMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDA 913
Query: 818 RDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGY 877
RD RQ MK++GVKKEPGQSWIEVKNSIH+F+VGD+ HPLAD+I++Y +L +R +EIGY
Sbjct: 914 RDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGY 973
Query: 878 VQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKF 937
VQ +SL ++L+ EQKDP ++IHSEKLAI+FGLLSL ++PI V+KNLRVCNDCH WIKF
Sbjct: 974 VQDCFSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKF 1033
Query: 938 VSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
VSK+SNR I+VRDA RFHHFEGG CSC+DYW
Sbjct: 1034 VSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1269 bits (3283), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 622/990 (62%), Positives = 752/990 (75%), Gaps = 84/990 (8%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60
ME+ G++ANSQTF+WLLEGCL+ S +DG K + YL GD
Sbjct: 72 MEQHGVRANSQTFLWLLEGCLNSRSF--------------YDGL-----KLIDFYLAFGD 112
Query: 61 LDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRA 120
L+ A+ +FD+M R++ WN++ + F+A++L GRV GLF +M+ +V +E F VLR
Sbjct: 113 LNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG 172
Query: 121 CIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSV 180
C G+ V+ + V QIH I+ GF S I NPLIDLY KNGF+ SAKKVF NL +DSV
Sbjct: 173 CSGNA-VSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSV 231
Query: 181 SWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240
SWVAMISG SQNGYE EA+LLFCQ+ LSACTK+E FE G+Q HGL+
Sbjct: 232 SWVAMISGLSQNGYEEEAMLLFCQI--------------VLSACTKVEFFEFGKQLHGLV 277
Query: 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKAL 300
K GFSSET+VCNALVTLYSRSGNL+SAEQIF M QRD V+YNSLISGLAQ GY ++AL
Sbjct: 278 LKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRAL 337
Query: 301 ELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLY 360
LF+KM LDC KPDCVTVASL+SACASVGA G+Q HSYAIK G++ DI+VEGS+LDLY
Sbjct: 338 ALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLY 397
Query: 361 VKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYP 420
VKCSD++TA++FFL YGQL++L++SFQIF QMQ EG+ PNQ+TYP
Sbjct: 398 VKCSDIKTAHEFFL---------------CYGQLDNLNKSFQIFTQMQIEGIVPNQFTYP 442
Query: 421 TILRTCTSLGALSLGEQIHTQL----------------------GNLNTAQEILRRLPED 458
+IL+TCT+LGA LGEQIHTQ+ G L+ A +I RRL E+
Sbjct: 443 SILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKEN 502
Query: 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518
DVVSWTAMI G+ QH F EAL LF+EM++QGI+SDNIGF+SAISACAGIQAL+QGRQIH
Sbjct: 503 DVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIH 562
Query: 519 AQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCE 578
AQS +SG+SDDLSIGNAL+SLYARCG+++EAY F++I AKDN+SWN L+SGFAQSGY E
Sbjct: 563 AQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFE 622
Query: 579 GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI 638
AL +F+QM + G++ N +TFGS VSAAAN+AN++ GKQ+H MI KTGYDSETE SN+LI
Sbjct: 623 EALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALI 682
Query: 639 TLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698
TLYAKCG+IDD +SWN+MITG+SQHG EA+ LFE MK+ DV+PNHV
Sbjct: 683 TLYAKCGTIDD-------------ISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHV 729
Query: 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758
TFVGVLSACSHVGLV+EG+ YF SMS + LVPKPEHYACVVDLLGR+G LSRA+ F E+
Sbjct: 730 TFVGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEE 789
Query: 759 MPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818
MPI+PDAMVWRTLLSAC VHKN++IGE+AA+HLLELEP+DSATYVL+SN+YA +GKWDCR
Sbjct: 790 MPIQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCR 849
Query: 819 DQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYV 878
D+ RQ+MKDRGVKKEPG+SW+EV NS+HAFF GD+ HP AD IY+YL L+ R AE GYV
Sbjct: 850 DRTRQMMKDRGVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYV 909
Query: 879 QGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFV 938
SL SD E QKDP IHSE+LAIAFGLLSL+ S P+ V KNLRVC DCHNWIK V
Sbjct: 910 PRCNSLLSDAEIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHV 969
Query: 939 SKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
SKI++R I+VRD+ RFHHF+ G CSC+DYW
Sbjct: 970 SKITDRVIIVRDSYRFHHFKVGSCSCKDYW 999
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 528/920 (57%), Positives = 676/920 (73%), Gaps = 23/920 (2%)
Query: 71 MSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQ 130
M+ R S+N+ ++GF+A ++L LF ++ F LRAC GSG
Sbjct: 1 MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGR-RWP 59
Query: 131 CVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFS 190
V +IH I G G +I N LIDLYAK GF+ A++VF L +D+VSWVA++SG++
Sbjct: 60 LVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYA 119
Query: 191 QNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETF 250
QNG EA+ L+ +MH G VPTPY +SS LSACTK ELF++G H ++K GF SETF
Sbjct: 120 QNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETF 179
Query: 251 VCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDC 310
V NAL++LY R + A+++F M D VT+N+LISG AQCG+ D+AL +F++MQL
Sbjct: 180 VGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG 239
Query: 311 LKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAY 370
L PD VT+ASL++AC++VG R G+QLHSY +K G+S D I+EGS+LDLYVK D+E A
Sbjct: 240 LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEAL 299
Query: 371 KFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLG 430
+ F + + NVVLWN+MLVAYGQ++DL++SF IF +M G+ PN++TYP +LRTCT G
Sbjct: 300 QIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTG 359
Query: 431 ALSLGEQIHT----------------------QLGNLNTAQEILRRLPEDDVVSWTAMIV 468
+ LGEQIH+ + G L+ AQ IL + E DVVSWT+MI
Sbjct: 360 EIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIA 419
Query: 469 GFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSD 528
G+VQH EALE F+EM+ GI DNIG +SAISACAGI+A++QG QIHA+ Y+SG+S
Sbjct: 420 GYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSA 479
Query: 529 DLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMT 588
D+SI N L+ LYARCG +EA+ F I+ K+ I+WNGLISGFAQSG E AL+VF +M
Sbjct: 480 DVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMD 539
Query: 589 QVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSID 648
Q G + N++TF S +SA+ANLA+IKQGKQ+HA +IKTGY SETE SN+LI+LY KCGSI+
Sbjct: 540 QAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIE 599
Query: 649 DAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACS 708
DAK +F EM ++NEVSWN +IT SQHG LEA++LF++MK+ + P+ VTFVGVL+ACS
Sbjct: 600 DAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACS 659
Query: 709 HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVW 768
HVGLV EGL YF+SMS E+G+ P+P+HYACVVD+LGRAG L RA+ F E+MPI D+MVW
Sbjct: 660 HVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVW 719
Query: 769 RTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828
RTLLSAC+VHKN+EIGE+AA HLLELEP DSA+YVLLSN YA GKW RDQIR+IMKDR
Sbjct: 720 RTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDR 779
Query: 829 GVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDL 888
GV+KEPG+SWIEVKN +HAFFVGDRLHPLAD+IY++L +LN R+ +IGY Q Y L+ +
Sbjct: 780 GVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEK 839
Query: 889 EQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVV 948
E+E KDP ++HSEKLA+AFGL+SL MP+ VIKNLRVCNDCH W+KF S + R IV+
Sbjct: 840 EKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVL 899
Query: 949 RDANRFHHFEGGVCSCRDYW 968
RD RFHHF G CSC DYW
Sbjct: 900 RDVYRFHHFNNGSCSCGDYW 919
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 968 | ||||||
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.723 | 0.657 | 0.528 | 3.3e-198 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.542 | 0.706 | 0.452 | 1.3e-151 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.544 | 0.608 | 0.362 | 2.9e-146 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.536 | 0.524 | 0.452 | 4.8e-144 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.720 | 0.892 | 0.375 | 6e-135 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.725 | 0.893 | 0.374 | 9.3e-130 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.720 | 0.802 | 0.375 | 6.2e-129 | |
| TAIR|locus:2082886 | 850 | EMB2261 "embryo defective 2261 | 0.543 | 0.618 | 0.439 | 1.7e-128 | |
| TAIR|locus:2078653 | 825 | AT3G02010 [Arabidopsis thalian | 0.609 | 0.715 | 0.386 | 1.9e-127 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.547 | 0.532 | 0.425 | 1.5e-122 |
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1919 (680.6 bits), Expect = 3.3e-198, P = 3.3e-198
Identities = 382/723 (52%), Positives = 512/723 (70%)
Query: 253 NALVTLYSRSGNLTSAEQIFSKMQQRDGVT--YNSLISGLAQCGYSDKALELFEKMQLDC 310
N L+ S+ G A ++F +M DG+ N+L S + C +D L +++
Sbjct: 358 NTLINGLSQCGYGEKAMELFKRMHL-DGLEPDSNTLASLVVACS-ADGTLFRGQQLHAYT 415
Query: 311 LKPDCVTVASLVSACASVGAFRTG-EQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETA 369
K + + A ++ A E Y ++ + +++++ ML Y D+ +
Sbjct: 416 TKLGFASNNKIEGALLNLYAKCADIETALDYFLETEV-ENVVLWNVMLVAYGLLDDLRNS 474
Query: 370 YKFFLTTETENVV----LWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRT 425
++ F + E +V + +L +L DL QI Q+ N Y
Sbjct: 475 FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYV------- 527
Query: 426 CTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEE 485
C+ L ++ +LG L+TA +IL R DVVSWT MI G+ Q+ +AL F +
Sbjct: 528 CSVL------IDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQ 581
Query: 486 MENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGR 545
M ++GI+SD +G ++A+SACAG+QAL +G+QIHAQ+ +SGFS DL NAL++LY+RCG+
Sbjct: 582 MLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGK 641
Query: 546 IQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA 605
I+E+YL F + +A DNI+WN L+SGF QSG E AL+VF +M + G+ N +TFGS V A
Sbjct: 642 IEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKA 701
Query: 606 AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSW 665
A+ AN+KQGKQVHA+I KTGYDSETE N+LI++YAKCGSI DA+++FLE+ KNEVSW
Sbjct: 702 ASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSW 761
Query: 666 NAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMST 725
NA+I +S+HG+ EA++ F++M +V PNHVT VGVLSACSH+GLV++G+ YFESM++
Sbjct: 762 NAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNS 821
Query: 726 EYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGE 785
EYGL PKPEHY CVVD+L RAG LSRA+EF ++MPI+PDA+VWRTLLSAC VHKNMEIGE
Sbjct: 822 EYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGE 881
Query: 786 YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSI 845
+AA+HLLELEPEDSATYVLLSN+YA + KWD RD RQ MK++GVKKEPGQSWIEVKNSI
Sbjct: 882 FAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 941
Query: 846 HAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLA 905
H+F+VGD+ HPLAD+I++Y +L +R +EIGYVQ +SL ++L+ EQKDP ++IHSEKLA
Sbjct: 942 HSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLA 1001
Query: 906 IAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCR 965
I+FGLLSL ++PI V+KNLRVCNDCH WIKFVSK+SNR I+VRDA RFHHFEGG CSC+
Sbjct: 1002 ISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCK 1061
Query: 966 DYW 968
DYW
Sbjct: 1062 DYW 1064
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1258 (447.9 bits), Expect = 1.3e-151, Sum P(3) = 1.3e-151
Identities = 238/526 (45%), Positives = 339/526 (64%)
Query: 443 GNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAI 502
G + A ++ R + E D VSW AMI G Q+G+ EA+E F EM+ QG++ D F S +
Sbjct: 219 GMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVL 277
Query: 503 SACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNI 562
AC G+ A+N+G+QIHA + F D + +G+ALI +Y +C + A VF+++ K+ +
Sbjct: 278 PACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVV 337
Query: 563 SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMI 622
SW ++ G+ Q+G E A+++F M + G+ + YT G +SA AN++++++G Q H
Sbjct: 338 SWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGSQFHGKA 397
Query: 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAI 682
I +G SNSL+TLY KCG IDD+ R F EM ++ VSW AM++ ++Q G A+E I
Sbjct: 398 ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFGRAVETI 457
Query: 683 NLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742
LF+KM +H + P+ VT GV+SACS GLV +G RYF+ M++EYG+VP HY+C++DL
Sbjct: 458 QLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDL 517
Query: 743 LGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802
R+G L A F MP PDA+ W TLLSACR N+EIG++AA L+EL+P A Y
Sbjct: 518 FSRSGRLEEAMRFINGMPFPPDAIGWTTLLSACRNKGNLEIGKWAAESLIELDPHHPAGY 577
Query: 803 VLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIY 862
LLS+IYA+ GKWD Q+R+ M+++ VKKEPGQSWI+ K +H+F D P D+IY
Sbjct: 578 TLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIY 637
Query: 863 DYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVI 922
L LN ++ + GY + D+E+ K + HSE+LAIAFGL+ + PI V
Sbjct: 638 AKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVG 697
Query: 923 KNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
KNLRVC DCHN K +S ++ R I+VRDA RFH F+ G CSC D+W
Sbjct: 698 KNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 743
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1016 (362.7 bits), Expect = 2.9e-146, Sum P(2) = 2.9e-146
Identities = 192/530 (36%), Positives = 315/530 (59%)
Query: 437 QIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNI 496
Q++ G+ A+++ R+ D+VSWT MI G+ + + +A++ + M+ ++ D I
Sbjct: 340 QMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEI 399
Query: 497 GFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKI 556
++ +SACA + L+ G ++H + + + + N LI++Y++C I +A +F+ I
Sbjct: 400 TVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNI 459
Query: 557 DAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGK 616
K+ ISW +I+G + C AL +F + ++ +Q N T + ++A A + + GK
Sbjct: 460 PRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMKMTLQPNAITLTAALAACARIGALMCGK 518
Query: 617 QVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHG 676
++HA +++TG + N+L+ +Y +CG ++ A +F +K+ SWN ++TG+S+ G
Sbjct: 519 EIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQF-NSQKKDVTSWNILLTGYSERG 577
Query: 677 YALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHY 736
+ LF++M K V P+ +TF+ +L CS +V +GL YF M +YG+ P +HY
Sbjct: 578 QGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKME-DYGVTPNLKHY 636
Query: 737 ACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEP 796
ACVVDLLGRAG L A +F ++MP+ PD VW LL+ACR+H +++GE +A H+ EL+
Sbjct: 637 ACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDK 696
Query: 797 EDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHP 856
+ Y+LL N+YA GKW ++R++MK+ G+ + G SW+EVK +HAF D+ HP
Sbjct: 697 KSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHP 756
Query: 857 LADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDS 916
+I L +++E+G + S D + +D HSE+ AIAFGL++
Sbjct: 757 QTKEINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPG 816
Query: 917 MPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRD 966
MPI V KNL +C +CH+ +KF+SK R I VRDA FHHF+ G CSC D
Sbjct: 817 MPIWVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 4.8e-144, Sum P(2) = 4.8e-144
Identities = 235/519 (45%), Positives = 332/519 (63%)
Query: 450 EILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQ 509
EIL D+V+W AM+ G+ Q + L+LF M QG +SD+ ++ C +
Sbjct: 472 EILFERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCGFLF 531
Query: 510 ALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLIS 569
A+NQG+Q+HA + SG+ DL + + ++ +Y +CG + A F+ I D+++W +IS
Sbjct: 532 AINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMIS 591
Query: 570 GFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDS 629
G ++G E A VFSQM +GV + +T ++ A++ L ++QG+Q+HA +K +
Sbjct: 592 GCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALKLNCTN 651
Query: 630 ETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMK 689
+ SL+ +YAKCGSIDDA F + N +WNAM+ G +QHG E + LF++MK
Sbjct: 652 DPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQLFKQMK 711
Query: 690 KHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCL 749
+ P+ VTF+GVLSACSH GLV+E ++ SM +YG+ P+ EHY+C+ D LGRAG +
Sbjct: 712 SLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADALGRAGLV 771
Query: 750 SRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809
+A E M +E A ++RTLL+ACRV + E G+ A LLELEP DS+ YVLLSN+Y
Sbjct: 772 KQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMY 831
Query: 810 AAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLN 869
AAA KWD R +MK VKK+PG SWIEVKN IH F V DR + + IY + ++
Sbjct: 832 AAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMI 891
Query: 870 RRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCN 929
R + + GYV D+E+E+K+ +Y HSEKLA+AFGLLS S PI VIKNLRVC
Sbjct: 892 RDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCG 951
Query: 930 DCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
DCHN +K+++K+ NR IV+RDANRFH F+ G+CSC DYW
Sbjct: 952 DCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1322 (470.4 bits), Expect = 6.0e-135, P = 6.0e-135
Identities = 275/733 (37%), Positives = 430/733 (58%)
Query: 253 NALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLK 312
N ++ Y R+G A ++F +M + V+YN +ISG + G + A +LF++M
Sbjct: 68 NVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM------ 121
Query: 313 PDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKF 372
P+ V+ V V G+ + I +D+ +ML Y + V+ A
Sbjct: 122 PERDLVSWNVMIKGYVRNRNLGKARELFEIMP--ERDVCSWNTMLSGYAQNGCVDDARSV 179
Query: 373 FLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTP-----------------N 415
F +N V WN +L AY Q + + E+ +FK + L
Sbjct: 180 FDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEAR 239
Query: 416 QYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGM 475
Q+ +R S + G + Q G ++ A+++ P DV +WTAM+ G++Q+ M
Sbjct: 240 QFFDSMNVRDVVSWNTIITG---YAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRM 296
Query: 476 FGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNA 535
EA ELF++M + + + +++ ++ + + +++ ++S N
Sbjct: 297 VEEARELFDKMPER----NEVSWNAMLAGYVQGERMEMAKELFDVMPCR----NVSTWNT 348
Query: 536 LISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN 595
+I+ YA+CG+I EA +F+K+ +D +SW +I+G++QSG+ AL++F QM + G + N
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGGRLN 408
Query: 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFL 655
+F S +S A++ ++ GKQ+H ++K GY++ N+L+ +Y KCGSI++A F
Sbjct: 409 RSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 468
Query: 656 EMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNE 715
EM K+ VSWN MI G+S+HG+ A+ FE MK+ + P+ T V VLSACSH GLV++
Sbjct: 469 EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHTGLVDK 528
Query: 716 GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSAC 775
G +YF +M+ +YG++P +HYAC+VDLLGRAG L A + MP EPDA +W TLL A
Sbjct: 529 GRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGAS 588
Query: 776 RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPG 835
RVH N E+ E AA+ + +EPE+S YVLLSN+YA++G+W ++R M+D+GVKK PG
Sbjct: 589 RVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPG 648
Query: 836 QSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDP 895
SWIE++N H F VGD HP D+I+ +L L+ R+ + GYV + D+E+E+K+
Sbjct: 649 YSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVSKTSVVLHDVEEEEKER 708
Query: 896 CVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFH 955
V HSE+LA+A+G++ +S PI VIKNLRVC DCHN IK++++I+ R I++RD NRFH
Sbjct: 709 MVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMARITGRLIILRDNNRFH 768
Query: 956 HFEGGVCSCRDYW 968
HF+ G CSC DYW
Sbjct: 769 HFKDGSCSCGDYW 781
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
Identities = 271/723 (37%), Positives = 416/723 (57%)
Query: 250 FVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLD 309
F N +++ YS+ G++ S + F ++ QRD V++ ++I G G KA+ + M +
Sbjct: 81 FSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKE 140
Query: 310 CLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETA 369
++P T+ +++++ A+ TG+++HS+ +K+G+ ++ V S+L++Y KC D A
Sbjct: 141 GIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMA 200
Query: 370 YKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSL 429
F ++ WN M+ + Q+ + + F+QM + T S+
Sbjct: 201 KFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIV-----------TWNSM 249
Query: 430 GALSLGEQIHTQLGNLNTAQEILR-RLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMEN 488
+S Q L L+ ++LR L D + +++ ++ +
Sbjct: 250 --ISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVT 307
Query: 489 QGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSI-G-NALISLYARCGRI 546
G I ++ IS + + R++ Q G + DL I G AL+ Y + G +
Sbjct: 308 TGFDISGIVLNALISMYSRCGGVETARRLIEQR---G-TKDLKIEGFTALLDGYIKLGDM 363
Query: 547 QEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAA 606
+A +F + +D ++W +I G+ Q G A+ +F M G + N YT +++S A
Sbjct: 364 NQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVA 423
Query: 607 ANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREF-LEMPEKNEVSW 665
++LA++ GKQ+H +K+G SN+LIT+YAK G+I A R F L E++ VSW
Sbjct: 424 SSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSW 483
Query: 666 NAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMST 725
+MI +QHG+A EA+ LFE M + P+H+T+VGV SAC+H GLVN+G +YF+ M
Sbjct: 484 TSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKD 543
Query: 726 EYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGE 785
++P HYAC+VDL GRAG L A+EF E+MPIEPD + W +LLSACRVHKN+++G+
Sbjct: 544 VDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGK 603
Query: 786 YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSI 845
AA LL LEPE+S Y L+N+Y+A GKW+ +IR+ MKD VKKE G SWIEVK+ +
Sbjct: 604 VAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVKHKV 663
Query: 846 HAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLA 905
H F V D HP ++IY + + + ++GYV S+ DLE+E K+ + HSEKLA
Sbjct: 664 HVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSEKLA 723
Query: 906 IAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCR 965
IAFGL+S D + ++KNLRVCNDCH IKF+SK+ R I+VRD RFHHF+ G CSCR
Sbjct: 724 IAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDGFCSCR 783
Query: 966 DYW 968
DYW
Sbjct: 784 DYW 786
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1243 (442.6 bits), Expect = 6.2e-129, Sum P(2) = 6.2e-129
Identities = 271/721 (37%), Positives = 425/721 (58%)
Query: 255 LVTLYSRSGNLTSAEQIFSKMQ----QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDC 310
L++ Y+R+ +F +MQ Q + T+ + + LA+ G + L++ + +
Sbjct: 165 LISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNG 224
Query: 311 LKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCS-DVETA 369
L SL++ G R L K + K ++ SM+ Y D+E A
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFD---KTEV-KSVVTWNSMISGYAANGLDLE-A 279
Query: 370 YKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSL 429
F + V L + +L + + +Q+ + + + +RT +
Sbjct: 280 LGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCS-VVKYGFLFDQNIRTALMV 338
Query: 430 GALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQ 489
A S + L L +EI +VVSWTAMI GF+Q+ EA++LF EM+ +
Sbjct: 339 -AYS---KCTAMLDALRLFKEIGC---VGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRK 391
Query: 490 GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEA 549
G++ + +S ++A I ++HAQ + + ++G AL+ Y + G+++EA
Sbjct: 392 GVRPNEFTYSVILTALPVISP----SEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEA 447
Query: 550 YLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA-AAN 608
VF+ ID KD ++W+ +++G+AQ+G E A+++F ++T+ G++ N +TF S+++ AA
Sbjct: 448 AKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAAT 507
Query: 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAM 668
A++ QGKQ H IK+ DS S++L+T+YAK G+I+ A+ F EK+ VSWN+M
Sbjct: 508 NASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSM 567
Query: 669 ITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYG 728
I+G++QHG A++A+++F++MKK V + VTF+GV +AC+H GLV EG +YF+ M +
Sbjct: 568 ISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCK 627
Query: 729 LVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAA 788
+ P EH +C+VDL RAG L +A + E MP + +WRT+L+ACRVHK E+G AA
Sbjct: 628 IAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAA 687
Query: 789 NHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAF 848
++ ++PEDSA YVLLSN+YA +G W R ++R++M +R VKKEPG SWIEVKN ++F
Sbjct: 688 EKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSF 747
Query: 849 FVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAF 908
GDR HPL D+IY L +L+ R+ ++GY + D++ E K+ + HSE+LAIAF
Sbjct: 748 LAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAF 807
Query: 909 GLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEG-GVCSCRDY 967
GL++ P+L+IKNLRVC DCH IK ++KI R IVVRD+NRFHHF GVCSC D+
Sbjct: 808 GLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDF 867
Query: 968 W 968
W
Sbjct: 868 W 868
|
|
| TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1261 (449.0 bits), Expect = 1.7e-128, P = 1.7e-128
Identities = 234/532 (43%), Positives = 352/532 (66%)
Query: 443 GNLNTAQEILRRLPEDDVVSWTAMIVGFVQH-GMFGEALELFEEMENQG-IQSDNIGFSS 500
G+++ +++ R+ + V+SWTA+I G++++ + EA+ LF EM QG ++ ++ FSS
Sbjct: 319 GSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSS 378
Query: 501 AISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD 560
A AC + G+Q+ Q++ G + + S+ N++IS++ + R+++A F + K+
Sbjct: 379 AFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKN 438
Query: 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHA 620
+S+N + G ++ E A ++ S++T+ + + +TF S++S AN+ +I++G+Q+H+
Sbjct: 439 LVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHS 498
Query: 621 MIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALE 680
++K G N+LI++Y+KCGSID A R F M +N +SW +MITGF++HG+A+
Sbjct: 499 QVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIR 558
Query: 681 AINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740
+ F +M + V PN VT+V +LSACSHVGLV+EG R+F SM ++ + PK EHYAC+V
Sbjct: 559 VLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMV 618
Query: 741 DLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800
DLL RAG L+ A EF MP + D +VWRT L ACRVH N E+G+ AA +LEL+P + A
Sbjct: 619 DLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPA 678
Query: 801 TYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADK 860
Y+ LSNIYA AGKW+ ++R+ MK+R + KE G SWIEV + IH F+VGD HP A +
Sbjct: 679 AYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQ 738
Query: 861 IYDYLGNLNRRVAEIGYVQGRYSLWSDLEQE----QKDPCVYIHSEKLAIAFGLLSLSDS 916
IYD L L + GYV + LE+E +K+ +Y HSEK+A+AFGL+S S S
Sbjct: 739 IYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKS 798
Query: 917 MPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
P+ V KNLRVC DCHN +K++S +S R IV+RD NRFHHF+ G CSC DYW
Sbjct: 799 RPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
|
| TAIR|locus:2078653 AT3G02010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1175 (418.7 bits), Expect = 1.9e-127, Sum P(2) = 1.9e-127
Identities = 230/595 (38%), Positives = 356/595 (59%)
Query: 378 TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQ 437
TE++ L+ M + Q +D + S + + Q + + T S A S+G Q
Sbjct: 232 TESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDA-SVGNQ 290
Query: 438 I---HTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSD 494
I +++ + + + +PE D VS+ +I + Q + +L F EM+ G
Sbjct: 291 ILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRR 350
Query: 495 NIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFN 554
N F++ +S A + +L GRQ+H Q+ ++ L +GN+L+ +YA+C +EA L+F
Sbjct: 351 NFPFATMLSIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFK 410
Query: 555 KIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQ 614
+ + +SW LISG+ Q G L++F++M ++A+ TF +V+ A+A+ A++
Sbjct: 411 SLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLL 470
Query: 615 GKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQ 674
GKQ+HA II++G + + L+ +YAKCGSI DA + F EMP++N VSWNA+I+ +
Sbjct: 471 GKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHAD 530
Query: 675 HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPE 734
+G AI F KM + + P+ V+ +GVL+ACSH G V +G YF++MS YG+ PK +
Sbjct: 531 NGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKK 590
Query: 735 HYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLEL 794
HYAC++DLLGR G + A + ++MP EPD ++W ++L+ACR+HKN + E AA L +
Sbjct: 591 HYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSM 650
Query: 795 EP-EDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDR 853
E D+A YV +SNIYAAAG+W+ +++ M++RG+KK P SW+EV + IH F D+
Sbjct: 651 EKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHVFSSNDQ 710
Query: 854 LHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSL 913
HP D+I + L + GY S+ D++++ K + HSE+LA+AF L+S
Sbjct: 711 THPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVAFALIST 770
Query: 914 SDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
+ PI+V+KNLR C DCH IK +SKI R I VRD +RFHHF GVCSC DYW
Sbjct: 771 PEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDYW 825
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1205 (429.2 bits), Expect = 1.5e-122, P = 1.5e-122
Identities = 229/538 (42%), Positives = 352/538 (65%)
Query: 438 IHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQ-HGMFGEALELFEEMENQGIQSDNI 496
++ + G LN ++I +PE D VSW ++I + EA+ F + G + + I
Sbjct: 459 LYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRI 518
Query: 497 GFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKI 556
FSS +SA + + G+QIH + + +D+ + NALI+ Y +CG + +F+++
Sbjct: 519 TFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRM 578
Query: 557 -DAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQG 615
+ +DN++WN +ISG+ + AL + M Q G + + + + +V+SA A++A +++G
Sbjct: 579 AERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERG 638
Query: 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH 675
+VHA ++ +S+ ++L+ +Y+KCG +D A R F MP +N SWN+MI+G+++H
Sbjct: 639 MEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARH 698
Query: 676 GYALEAINLFEKMKKH-DVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPE 734
G EA+ LFE MK P+HVTFVGVLSACSH GL+ EG ++FESMS YGL P+ E
Sbjct: 699 GQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIE 758
Query: 735 HYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSAC-RVH-KNMEIGEYAANHLL 792
H++C+ D+LGRAG L + +F E+MP++P+ ++WRT+L AC R + + E+G+ AA L
Sbjct: 759 HFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLF 818
Query: 793 ELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGD 852
+LEPE++ YVLL N+YAA G+W+ + R+ MKD VKKE G SW+ +K+ +H F GD
Sbjct: 819 QLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGD 878
Query: 853 RLHPLADKIYDYLGNLNRRVAEIGYV-QGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLL 911
+ HP AD IY L LNR++ + GYV Q ++L+ DLEQE K+ + HSEKLA+AF L
Sbjct: 879 KSHPDADVIYKKLKELNRKMRDAGYVPQTGFALY-DLEQENKEEILSYHSEKLAVAFVLA 937
Query: 912 SL-SDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968
+ S ++PI ++KNLRVC DCH+ K++SKI R I++RD+NRFHHF+ G CSC D+W
Sbjct: 938 AQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SVP7 | PP307_ARATH | No assigned EC number | 0.6094 | 0.9989 | 0.9088 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 968 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-161 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-90 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-83 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-76 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-49 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-49 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-48 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-43 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-41 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-27 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-19 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.004 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 577 bits (1488), Expect = 0.0
Identities = 272/736 (36%), Positives = 415/736 (56%), Gaps = 25/736 (3%)
Query: 253 NALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLK 312
NA+++++ R G L A +F KM +RD ++N L+ G A+ GY D+AL L+ +M ++
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184
Query: 313 PDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKF 372
PD T ++ C + G ++H++ ++ G D+ V +++ +YVKC DV +A
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244
Query: 373 FLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGAL 432
F + + WN M+ Y + + E ++F M+ + P+ T +++ C LG
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304
Query: 433 SLGEQIH----------------------TQLGNLNTAQEILRRLPEDDVVSWTAMIVGF 470
LG ++H LG+ A+++ R+ D VSWTAMI G+
Sbjct: 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 471 VQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDL 530
++G+ +ALE + ME + D I +S +SACA + L+ G ++H + G +
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYV 424
Query: 531 SIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQV 590
+ NALI +Y++C I +A VF+ I KD ISW +I+G + C AL F QM +
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LL 483
Query: 591 GVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDA 650
++ N T + +SA A + + GK++HA +++TG + N+L+ LY +CG ++ A
Sbjct: 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543
Query: 651 KREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHV 710
+F EK+ VSWN ++TG+ HG A+ LF +M + V P+ VTF+ +L ACS
Sbjct: 544 WNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
Query: 711 GLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRT 770
G+V +GL YF SM +Y + P +HYACVVDLLGRAG L+ A F +MPI PD VW
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662
Query: 771 LLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGV 830
LL+ACR+H+++E+GE AA H+ EL+P Y+LL N+YA AGKWD ++R+ M++ G+
Sbjct: 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
Query: 831 KKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQ 890
+PG SW+EVK +HAF D HP +I L ++ G S D +
Sbjct: 723 TVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSS-MDEIE 781
Query: 891 EQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRD 950
KD HSE+LAIAFGL++ MPI V KNL +C +CHN +KF+SKI R I VRD
Sbjct: 782 VSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRD 841
Query: 951 ANRFHHFEGGVCSCRD 966
+FHHF+ G CSC D
Sbjct: 842 TEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 488 bits (1259), Expect = e-161
Identities = 218/567 (38%), Positives = 334/567 (58%), Gaps = 15/567 (2%)
Query: 403 IFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVS 462
++ +++ G P+QY +L H + G L A+ + +PE ++ S
Sbjct: 145 VYWHVESSGFEPDQYMMNRVLLM-------------HVKCGMLIDARRLFDEMPERNLAS 191
Query: 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSY 522
W +I G V G + EA LF EM G ++ F + A AG+ + G+Q+H
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 523 ISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQ 582
+G D + ALI +Y++CG I++A VF+ + K ++WN +++G+A GY E AL
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311
Query: 583 VFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA 642
++ +M GV + +TF ++ + LA ++ KQ HA +I+TG+ + A+ +L+ LY+
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYS 371
Query: 643 KCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVG 702
K G ++DA+ F MP KN +SWNA+I G+ HG +A+ +FE+M V PNHVTF+
Sbjct: 372 KWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA 431
Query: 703 VLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIE 762
VLSAC + GL +G F+SMS + + P+ HYAC+++LLGR G L A + P +
Sbjct: 432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK 491
Query: 763 PDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIR 822
P +W LL+ACR+HKN+E+G AA L + PE YV+L N+Y ++G+ ++
Sbjct: 492 PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVV 551
Query: 823 QIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRY 882
+ +K +G+ P +WIEVK H+FF GDRLHP + +IY L L + ++E GYV
Sbjct: 552 ETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611
Query: 883 SLWSD-LEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKI 941
L D E E+K Y HSEKLAIAFGL++ S+ P+ + ++ R+C DCH IKF++ +
Sbjct: 612 ELLPDVDEDEEKVSGRY-HSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALV 670
Query: 942 SNRTIVVRDANRFHHFEGGVCSCRDYW 968
+ R IVVRDA+RFHHF+ G CSC DYW
Sbjct: 671 TKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 306 bits (785), Expect = 3e-90
Identities = 180/603 (29%), Positives = 293/603 (48%), Gaps = 46/603 (7%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILK----LGFDGEQVLCDKFFNIYL 56
M+E + + +V L C ++ E ++ + L LG L + ++++
Sbjct: 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR----LGNAMLSMFV 132
Query: 57 TSGDLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVG 116
G+L A +F M +R +FSWN L+ G+ L L+ +M+ V P+ TF
Sbjct: 133 RFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPC 192
Query: 117 VLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCF 176
VLR C G ++A ++H ++ GF + N LI +Y K G + SA+ VF+ +
Sbjct: 193 VLRTCGGIPDLARG--REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250
Query: 177 KDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQF 236
+D +SW AMISG+ +NG E + LF M L P I+S +SAC + +G +
Sbjct: 251 RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310
Query: 237 HGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYS 296
HG + K GF+ + VCN+L+ +Y G+ AE++FS+M+ +D V++ ++ISG + G
Sbjct: 311 HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLP 370
Query: 297 DKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSM 356
DKALE + M+ D + PD +T+AS++SACA +G G +LH A + G+ ++V ++
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 357 LDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQ 416
+++Y KC ++ A + F ++V+ W ++ N E+ F+QM L PN
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNS 489
Query: 417 YTYPTILRTCTSLGALSLGEQIHTQL----------------------GNLNTAQEILRR 454
T L C +GAL G++IH + G +N A
Sbjct: 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-N 548
Query: 455 LPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQG 514
E DVVSW ++ G+V HG A+ELF M G+ D + F S + AC+ + QG
Sbjct: 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQG 608
Query: 515 RQIHAQSYISGFSDDLSIGNAL------ISLYARCGRIQEAYLVFNKIDAK-DNISWNGL 567
+ Y + SI L + L R G++ EAY NK+ D W L
Sbjct: 609 LE-----YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663
Query: 568 ISG 570
++
Sbjct: 664 LNA 666
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 2e-83
Identities = 176/628 (28%), Positives = 316/628 (50%), Gaps = 37/628 (5%)
Query: 96 LGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLI 155
L L M + V +E +V + R C AV+ +++ +S + N ++
Sbjct: 71 LKLLESMQELRVPVDEDAYVALFRLC--EWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 156 DLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPY 215
++ + G + A VF + +D SW ++ G+++ GY EA+ L+ +M G P Y
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 216 AISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKM 275
L C I G + H + ++GF + V NAL+T+Y + G++ SA +F +M
Sbjct: 189 TFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM 248
Query: 276 QQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGE 335
+RD +++N++ISG + G + LELF M+ + PD +T+ S++SAC +G R G
Sbjct: 249 PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR 308
Query: 336 QLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLN 395
++H Y +K G + D+ V S++ +Y+ A K F ET++ V W M+ Y + N
Sbjct: 309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY-EKN 367
Query: 396 DLSE-SFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIH--------------- 439
L + + + + M+ + ++P++ T ++L C LG L +G ++H
Sbjct: 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVA 427
Query: 440 -------TQLGNLNTAQEILRRLPEDDVVSWTAMIVGF-VQHGMFGEALELFEEMENQGI 491
++ ++ A E+ +PE DV+SWT++I G + + F EAL F +M +
Sbjct: 428 NALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF-EALIFFRQMLLT-L 485
Query: 492 QSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYL 551
+ +++ +A+SACA I AL G++IHA +G D + NAL+ LY RCGR+ A+
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545
Query: 552 VFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLAN 611
FN KD +SWN L++G+ G A+++F++M + GV + TF S++ A +
Sbjct: 546 QFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604
Query: 612 IKQGKQV-HAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVS-WNAMI 669
+ QG + H+M K + ++ L + G + +A +MP + + W A++
Sbjct: 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALL 664
Query: 670 TGFSQHGYA----LEAINLFEKMKKHDV 693
H + L A ++FE + + V
Sbjct: 665 NACRIHRHVELGELAAQHIFE-LDPNSV 691
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 268 bits (686), Expect = 1e-76
Identities = 136/455 (29%), Positives = 232/455 (50%), Gaps = 23/455 (5%)
Query: 284 NSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIK 343
NS + L G ++AL+L E MQ + D +L C A G ++ S A+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 344 VGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQI 403
S + + +ML ++V+ ++ A+ F ++ WNV++ Y + E+ +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 404 FKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL--------------------- 442
+ +M G+ P+ YT+P +LRTC + L+ G ++H +
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 443 -GNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSA 501
G++ +A+ + R+P D +SW AMI G+ ++G E LELF M + D + +S
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 502 ISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDN 561
ISAC + GR++H +GF+ D+S+ N+LI +Y G EA VF++++ KD
Sbjct: 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA 354
Query: 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAM 621
+SW +ISG+ ++G + AL+ ++ M Q V + T SV+SA A L ++ G ++H +
Sbjct: 355 VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHEL 414
Query: 622 IIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEA 681
+ G S +N+LI +Y+KC ID A F +PEK+ +SW ++I G + EA
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474
Query: 682 INLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEG 716
+ F +M + PN VT + LSAC+ +G + G
Sbjct: 475 LIFFRQMLLT-LKPNSVTLIAALSACARIGALMCG 508
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 5e-49
Identities = 95/320 (29%), Positives = 173/320 (54%), Gaps = 2/320 (0%)
Query: 10 SQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFD 69
+ T+ L+E C++ S+ K ++ + GF+ +Q + ++ +++ G L A ++FD
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 70 DMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAV 129
+M +R + SW +I G V LF +M +D TFV +LRA G G+
Sbjct: 183 EMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 130 QCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGF 189
Q+H ++ G G +S LID+Y+K G I+ A+ VF+ + K +V+W +M++G+
Sbjct: 243 G--QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY 300
Query: 190 SQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSET 249
+ +GY EA+ L+ +M G + S + +++ L E +Q H + + GF +
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
Query: 250 FVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLD 309
ALV LYS+ G + A +F +M +++ +++N+LI+G G KA+E+FE+M +
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 310 CLKPDCVTVASLVSACASVG 329
+ P+ VT +++SAC G
Sbjct: 421 GVAPNHVTFLAVLSACRYSG 440
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (471), Expect = 5e-49
Identities = 118/436 (27%), Positives = 199/436 (45%), Gaps = 26/436 (5%)
Query: 267 SAEQIFSKMQQR-DGVTYNSLISGLAQCGYSDKALELFEKMQLDC-LKPDCVTVASLVSA 324
S + Q R GV+ S I L CG +ALELFE ++ C T +LV A
Sbjct: 73 SKDARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEA 132
Query: 325 CASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLW 384
C ++ + R + ++ + G D + +L ++VKC + A + F N+ W
Sbjct: 133 CIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASW 192
Query: 385 NVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIH----- 439
++ + E+F +F++M +G T+ +LR LG+ G+Q+H
Sbjct: 193 GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252
Query: 440 -----------------TQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALEL 482
++ G++ A+ + +PE V+W +M+ G+ HG EAL L
Sbjct: 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCL 312
Query: 483 FEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR 542
+ EM + G+ D FS I + + L +Q HA +GF D+ AL+ LY++
Sbjct: 313 YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSK 372
Query: 543 CGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSV 602
GR+++A VF+++ K+ ISWN LI+G+ G A+++F +M GV N TF +V
Sbjct: 373 WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432
Query: 603 VSAAANLANIKQGKQV-HAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKN 661
+SA +QG ++ +M +I L + G +D+A P K
Sbjct: 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492
Query: 662 EVS-WNAMITGFSQHG 676
V+ W A++T H
Sbjct: 493 TVNMWAALLTACRIHK 508
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 9e-48
Identities = 89/312 (28%), Positives = 168/312 (53%), Gaps = 2/312 (0%)
Query: 464 TAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYI 523
+ + HG +AL+L E M+ + D + + C +A+ +G ++ +++
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 524 SGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQV 583
S S + +GNA++S++ R G + A+ VF K+ +D SWN L+ G+A++GY + AL +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174
Query: 584 FSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAK 643
+ +M GV+ ++YTF V+ + ++ +G++VHA +++ G++ + + N+LIT+Y K
Sbjct: 175 YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK 234
Query: 644 CGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGV 703
CG + A+ F MP ++ +SWNAMI+G+ ++G LE + LF M++ V P+ +T V
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294
Query: 704 LSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEP 763
+SAC +G G R + G ++ + G A + +M +
Sbjct: 295 ISACELLGDERLG-REMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK- 352
Query: 764 DAMVWRTLLSAC 775
DA+ W ++S
Sbjct: 353 DAVSWTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 2e-43
Identities = 115/449 (25%), Positives = 210/449 (46%), Gaps = 18/449 (4%)
Query: 113 TFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFN 172
T+ ++ ACI +++CV ++ + S GF + N ++ ++ K G + A+++F+
Sbjct: 125 TYDALVEACIALK--SIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 173 NLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEI 232
+ ++ SW +I G G REA LF +M G+ P L A +
Sbjct: 183 EMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242
Query: 233 GEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQ 292
G+Q H + K G +TFV AL+ +YS+ G++ A +F M ++ V +NS+++G A
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYAL 302
Query: 293 CGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIV 352
GYS++AL L+ +M+ + D T + ++ + + +Q H+ I+ G DI+
Sbjct: 303 HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362
Query: 353 EGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGL 412
+++DLY K +E A F +N++ WN ++ YG +++ ++F++M EG+
Sbjct: 363 NTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 413 TPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQ 472
PN T+ +L C G G +I + E R P + + MI +
Sbjct: 423 APNHVTFLAVLSACRYSGLSEQGWEI------FQSMSENHRIKPR--AMHYACMIELLGR 474
Query: 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSI 532
G+ EA + + N+ +++ ++AC + L GR + Y G +
Sbjct: 475 EGLLDEAYAMIRRAPF--KPTVNM-WAALLTACRIHKNLELGRLAAEKLYGMGPE---KL 528
Query: 533 GN--ALISLYARCGRIQEAYLVFNKIDAK 559
N L++LY GR EA V + K
Sbjct: 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 2e-41
Identities = 93/330 (28%), Positives = 164/330 (49%), Gaps = 25/330 (7%)
Query: 461 VSWTAMIVGFVQHGMFGEALELFEEME-NQGIQSDNIGFSSAISACAGIQALNQGRQIHA 519
VS + I V G EALELFE +E + + + AC ++++ + ++
Sbjct: 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYW 147
Query: 520 QSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEG 579
SGF D + N ++ ++ +CG + +A +F+++ ++ SW +I G +G
Sbjct: 148 HVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYRE 207
Query: 580 ALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639
A +F +M + G A TF ++ A+A L + + G+Q+H ++KTG +T S +LI
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 640 LYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVT 699
+Y+KCG I+DA+ F MPEK V+WN+M+ G++ HGY+ EA+ L+ +M+ V + T
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT 327
Query: 700 FVGVLSACS-----------HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGC 748
F ++ S H GL+ G +V +VDL + G
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLIRTGF--------PLDIVAN----TALVDLYSKWGR 375
Query: 749 LSRAREFTEQMPIEPDAMVWRTLLSACRVH 778
+ AR ++MP + + + W L++ H
Sbjct: 376 MEDARNVFDRMPRK-NLISWNALIAGYGNH 404
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-27
Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 2/233 (0%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60
M E G A +TFV +L GS +++H +LK G G+ + ++Y GD
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274
Query: 61 LDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRA 120
++ A +FD M ++T +WN +++G+ S L L+ +M D V ++ TF ++R
Sbjct: 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 121 CIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSV 180
++ Q H +I GF + + L+DLY+K G ++ A+ VF+ + K+ +
Sbjct: 335 FSRLA--LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI 392
Query: 181 SWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIG 233
SW A+I+G+ +G +A+ +F +M G P + LSAC L E G
Sbjct: 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 1e-19
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 23/132 (17%)
Query: 834 PGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQK 893
PG W E K GD HP + L +R+ G V + D++ E+
Sbjct: 1 PGCVWSEGK----KTLSGDGSHPTSK------EELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 894 DPCVYI------HSEKLAIAFGLLSLSDSMPILVIKNL-RVCNDCHNWIKFVSKISNRTI 946
H+EK A+A+GLL +IK L R+C DCH + ++++K + R I
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 947 VVRDANRFHHFE 958
+VRD +RFHHF+
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-14
Identities = 50/200 (25%), Positives = 90/200 (45%), Gaps = 26/200 (13%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60
M + G+ + TF ++ L AK+ H +++ GF + V ++Y G
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGR 375
Query: 61 LDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRA 120
++ A +FD M ++ + SWN LI+G+ + + +F +MI + V PN TF+ VL A
Sbjct: 376 MEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 121 CIGSGNVA-----VQCVNQIHGLIISHGFGGSPLISNP-------LIDLYAKNGFIDSAK 168
C SG Q +++ H + P +I+L + G +D A
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRI-------------KPRAMHYACMIELLGREGLLDEAY 482
Query: 169 KVFNNLCFKDSVS-WVAMIS 187
+ FK +V+ W A+++
Sbjct: 483 AMIRRAPFKPTVNMWAALLT 502
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 9e-14
Identities = 72/359 (20%), Positives = 152/359 (42%), Gaps = 36/359 (10%)
Query: 282 TYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYA 341
T+N L+S A D AL + +Q LK DC +L+S CA G ++
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 342 IKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENV----VLWNVMLVAYGQLNDL 397
+ G+ ++ G+++D + V A+ + ++NV V++N ++ A GQ +
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 398 SESFQIFKQMQTEG--LTPNQYTYPTILRTCTSLG----ALSLGEQIH------------ 439
+F + +M+ E + P+ T +++ C + G A + + IH
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618
Query: 440 ------TQLGNLNTAQEILRRLPEDDV----VSWTAMIVGFVQHGMFGEALELFEEMENQ 489
+Q G+ + A I + + V V ++A++ G +A E+ ++ Q
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 490 GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEA 549
GI+ + +SS + AC+ + + +++ +S NALI+ ++ +A
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 550 YLVFNKID----AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVS 604
V +++ + I+++ L+ + + L + SQ + G++ NL +
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG 797
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 7e-12
Identities = 50/225 (22%), Positives = 106/225 (47%), Gaps = 10/225 (4%)
Query: 567 LISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTG 626
LIS A+SG + +VF +M GV+AN++TFG+++ A + + + ++
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 627 YDSETEASNSLITLYAKCGSIDDAKREFLEM-----PEK-NEVSWNAMITGFSQHGYALE 680
+ N+LI+ + G++D A EM P + ++ A++ + G
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 681 AINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740
A +++ + ++++ + +++CS G + L ++ M + G+ P ++ +V
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM-KKKGVKPDEVFFSALV 656
Query: 741 DLLGRAGCLSRAREFTEQMP---IEPDAMVWRTLLSACRVHKNME 782
D+ G AG L +A E + I+ + + +L+ AC KN +
Sbjct: 657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 9e-12
Identities = 82/402 (20%), Positives = 172/402 (42%), Gaps = 37/402 (9%)
Query: 366 VETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRT 425
V+ A++F + +N+++ D+ + ++ + +Q GL + Y T++ T
Sbjct: 422 VKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481
Query: 426 CTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEE 485
C G + ++ ++ N E +V ++ A+I G + G +A +
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGV---------EANVHTFGALIDGCARAGQVAKAFGAYGI 532
Query: 486 MENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFS---DDLSIGNALISLYAR 542
M ++ ++ D + F++ ISAC A+++ + A+ D +++G AL+ A
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG-ALMKACAN 591
Query: 543 CGRIQEAYLVFNKIDAKDNIS-----WNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY 597
G++ A V+ I + NI + ++ +Q G + AL ++ M + GV+ +
Sbjct: 592 AGQVDRAKEVYQMIH-EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650
Query: 598 TFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEM 657
F ++V A + ++ + ++ K G T + +SL+ C + + K+ LE+
Sbjct: 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM---GACSNAKNWKKA-LEL 706
Query: 658 PEKNEVS--------WNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH 709
E + NA+IT + +A+ + +MK+ + PN +T+ +L A
Sbjct: 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
Query: 710 VGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSR 751
+ GL + G+ P C+ L CL R
Sbjct: 767 KDDADVGLDLLSQAKED-GIKPNLVMCRCITGL-----CLRR 802
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 9e-11
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH 709
+ V++N +I G+ + G EA+ LF +MKK + PN T+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 9e-10
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACA 506
DVV++ +I G+ + G EAL+LF EM+ +GI+ + +S I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 7e-09
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 281 VTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACA 326
VTYN+LI G + G ++AL+LF +M+ +KP+ T + L+
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 2e-08
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 380 NVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTC 426
+VV +N ++ Y + + E+ ++F +M+ G+ PN YTY ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 5e-08
Identities = 75/375 (20%), Positives = 140/375 (37%), Gaps = 86/375 (22%)
Query: 82 LISGFVAKKLSGRVLGLFL---QMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGL 138
LIS AK SG+V +F +M++ V N TF ++ C +G VA +G+
Sbjct: 478 LIST-CAK--SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF--GAYGI 532
Query: 139 IISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFK------DSVSWVAMISGFSQN 192
+ S ++ N LI ++G +D A V + + D ++ A++ +
Sbjct: 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA 592
Query: 193 GYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVC 252
G A ++ +H TP + A+++C
Sbjct: 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC---------------------------- 624
Query: 253 NALVTLYSRSGNLTSAEQIFSKMQQRDGVT-----YNSLISGLAQCGYSDKALELFEKMQ 307
S+ G+ A I+ M+ + GV +++L+ G DKA E+ + +
Sbjct: 625 -------SQKGDWDFALSIYDDMK-KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 308 LDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVE 367
+K V+ +SL+ AC++ ++ L+LY
Sbjct: 677 KQGIKLGTVSYSSLMGACSNAKNWKKA----------------------LELYEDIK--- 711
Query: 368 TAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCT 427
+ K T T N ++ A + N L ++ ++ +M+ GL PN TY +L
Sbjct: 712 -SIKLRPTVST-----MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765
Query: 428 SLGALSLGEQIHTQL 442
+G + +Q
Sbjct: 766 RKDDADVGLDLLSQA 780
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 8e-07
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 249 TFVCNALVTLYSRSGNLTSAEQIFSKMQQR----DGVTYNSLISGLAQ 292
N L+ Y + G + A ++F++M++R + TY+ LI GL +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 9e-07
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 559 KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA 605
D +++N LI G+ + G E AL++F++M + G++ N+YT+ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 461 VSWTAMIVGFVQHGMFGEALELFEEMENQGI 491
V++ ++I G+ + G EALELF+EM+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 281 VTYNSLISGLAQCGYSDKALELFEKMQ 307
VTYNSLISG + G ++ALELF++M+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 2e-06
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 274 KMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQ 307
K + D VTYN+LI GL + G D+A+EL ++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 5e-06
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 461 VSWTAMIVGFVQHGMFGEALELFEEMENQGIQSD 494
V++ +I G + G EALELF+EM+ +GI+ D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 281 VTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDC 315
VTYN+LI GL + G ++ALELF++M+ ++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 9e-06
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDV 693
V++N++I+G+ + G EA+ LF++MK+ V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-05
Identities = 74/369 (20%), Positives = 136/369 (36%), Gaps = 78/369 (21%)
Query: 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60
M G++AN TF L++GC G + +A +G + ++V+ + + SG
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 61 LDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRA 120
+D A + +M T ID P+ T +++A
Sbjct: 558 VDRAFDVLAEMKAET-------------------------HPID----PDHITVGALMKA 588
Query: 121 CIGSGNV--AVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFK- 177
C +G V A + IH + G+P + ++ ++ G D A +++++ K
Sbjct: 589 CANAGQVDRAKEVYQMIH----EYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 178 ---DSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGE 234
D V + A++ G +A + G + SS + AC
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC---------- 694
Query: 235 QFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSK---MQQRDGV-TYNSLISGL 290
NA N A +++ ++ R V T N+LI+ L
Sbjct: 695 -----------------SNA--------KNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 291 AQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDI 350
+ KALE+ +M+ L P+ +T + L+ A G L S A + GI ++
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
Query: 351 IVEGSMLDL 359
++ + L
Sbjct: 790 VMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 76 VFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRAC 121
V ++N LI G+ K L LF +M + PN T+ ++
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 3e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 459 DVVSWTAMIVGFVQHGMFGEALELFEEME 487
DVV++ +I G + G EA+EL +EME
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 5e-04
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696
V++N +I G + G EA+ LF++MK+ + P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 0.001
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 635 NSLITLYAKCGSIDDAKREFLEMPEK----NEVSWNAMITGFSQ 674
N+LI Y K G +++A + F EM ++ N +++ +I G +
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 534 NALISLYARCGRIQEAYLVFNKIDAK----DNISWNGLISGFAQ 573
N LI Y + G+++EA +FN++ + + +++ LI G +
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGV 592
+++N LISG+ ++G E AL++F +M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 0.001
Identities = 8/34 (23%), Positives = 20/34 (58%)
Query: 382 VLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPN 415
V +N ++ + + E+ ++FK+M+ G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.001
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 460 VVSWTAMIVGFVQHGMFGEALELFEEMENQGIQ 492
+ ++ A+++ + G AL + EEM+ G++
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP 695
++NA++ ++ G A+ + E+MK + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.003
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 381 VVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTP 414
+ +N +L+A + D + + ++M+ GL P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.004
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 177 KDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTK 226
D V++ +I G+ + G EA+ LF +M G P Y S + K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.004
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 382 VLWNVMLVAYGQLNDLSESFQIFKQMQTEGL 412
V +N ++ Y + L E+ ++FK+M+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 968 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.78 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.77 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.74 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.7 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.67 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.67 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.65 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.54 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.47 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.44 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.42 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.42 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.41 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.36 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.34 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.31 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.3 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.3 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.29 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.25 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.23 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.23 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.21 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.19 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.19 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.18 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.18 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.16 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.12 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.12 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.06 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.05 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.04 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.0 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.98 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.95 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.95 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.95 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.92 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.88 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.88 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.85 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.85 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.81 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.81 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.81 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.79 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.78 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.78 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.73 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.73 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.72 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.71 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.71 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.57 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.55 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.53 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.51 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.47 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.36 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.36 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.36 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.35 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.34 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.3 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.26 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.24 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.2 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.2 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.19 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.18 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.17 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.17 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.16 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.13 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.08 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.08 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.08 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.01 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.99 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.96 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.92 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.91 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 97.91 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.89 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.89 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.89 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.86 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.85 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.82 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.81 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.79 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.77 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.76 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.73 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.59 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.55 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.37 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.33 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.32 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.3 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.3 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.28 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.24 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.23 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.21 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.2 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.19 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.19 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.16 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.11 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.07 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.06 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.04 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.03 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.03 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.98 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.97 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.96 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.95 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.93 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.92 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.9 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.87 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.84 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.8 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.73 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.73 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.72 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.67 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.64 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.64 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.57 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.49 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.45 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.34 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.33 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.31 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.3 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.29 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.25 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.19 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.15 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.13 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.11 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.03 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.02 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.96 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.95 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.89 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.88 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.79 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.65 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.62 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.59 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.57 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.48 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.01 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.84 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 94.79 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.7 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 94.69 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.61 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.53 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.3 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 94.27 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.15 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 94.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 93.97 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.96 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.84 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.59 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.5 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 93.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.36 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.25 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 93.16 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.14 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 93.05 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.83 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.72 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 92.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.26 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.21 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 92.14 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.07 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 91.51 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.45 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 91.38 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 91.21 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.87 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 90.48 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 90.41 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 90.06 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 89.75 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.7 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 89.66 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.65 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.61 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.24 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.22 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.15 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.1 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 89.02 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 88.97 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 88.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 88.64 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.44 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.42 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.92 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 87.79 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.78 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.45 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 87.17 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 86.81 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 86.59 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.99 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 85.99 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 85.42 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.31 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.11 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.99 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.92 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 84.67 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 83.78 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 83.38 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.2 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 82.99 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.86 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.81 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 81.77 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.17 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 81.03 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 80.75 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.35 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-165 Score=1506.76 Aligned_cols=810 Identities=36% Similarity=0.655 Sum_probs=786.0
Q ss_pred CCCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchh
Q 040643 73 KRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISN 152 (968)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 152 (968)
.++..++|.++.+|++.|.+++|+.+|++|.+.|+.|+..+|..++++|...+... .+.++|..+++.+..++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVE--EGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHH--HHHHHHHHHHHcCCCCCchHHH
Confidence 55777899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHH
Q 040643 153 PLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEI 232 (968)
Q Consensus 153 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 232 (968)
+|+.+|+++|+++.|.++|++|+.||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccC
Q 040643 233 GEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLK 312 (968)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 312 (968)
++++|..+++.|+.||+.++|+||.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|.+|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHH
Q 040643 313 PDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYG 392 (968)
Q Consensus 313 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 392 (968)
||..||++++.+|++.|+++.|+++|..+.+.|+.||..++|+||++|+++|++++|.++|++|..||+++
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s--------- 356 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS--------- 356 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee---------
Confidence 99999999999999999999999999999999999999999999999999999999999999988777664
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHh
Q 040643 393 QLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQ 472 (968)
Q Consensus 393 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 472 (968)
||+||.+|++
T Consensus 357 ----------------------------------------------------------------------~n~li~~~~~ 366 (857)
T PLN03077 357 ----------------------------------------------------------------------WTAMISGYEK 366 (857)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHh
Confidence 5555555555
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 040643 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLV 552 (968)
Q Consensus 473 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 552 (968)
.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666677777777777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChh
Q 040643 553 FNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETE 632 (968)
Q Consensus 553 f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 632 (968)
|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|+++.|+++|..+.+.|+.+|..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999985 699999999999999999999999999999999999999999
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL 712 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 712 (968)
++|+||++|+|||++++|.++|+.+ +||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLL 792 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 792 (968)
+++|+++|++|.+++|+.|+.+||+||||+|+|+|+++||++++++||++||..+|++|+++|+.|||+++|+.++++++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Q 040643 793 ELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRV 872 (968)
Q Consensus 793 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 872 (968)
+++|+++++|++|+|+|+..|+|++|.++|+.|+++|++|+|||||||++|++|.|++||++||++++||.+|++|..+|
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCCCCCCEEEecccccCChhhHHHHHHHHhhcceEEEecCC
Q 040643 873 AEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDAN 952 (968)
Q Consensus 873 ~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 952 (968)
++.||+||+++++ |++||+||+.|++||||||||||||+||||+||||+||||||+|||+++||||||++|||||||++
T Consensus 765 ~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~ 843 (857)
T PLN03077 765 KASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTE 843 (857)
T ss_pred HhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCC
Confidence 9999999999999 458899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcCCCCC
Q 040643 953 RFHHFEGGVCSCRD 966 (968)
Q Consensus 953 ~~h~f~~g~csc~d 966 (968)
|||||+||+|||||
T Consensus 844 rfh~f~~g~csc~d 857 (857)
T PLN03077 844 QFHHFKDGECSCGD 857 (857)
T ss_pred cceeCCCCcccCCC
Confidence 99999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-135 Score=1217.74 Aligned_cols=613 Identities=38% Similarity=0.712 Sum_probs=594.0
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccc-cCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhH
Q 040643 277 QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDC-LKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGS 355 (968)
Q Consensus 277 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 355 (968)
.++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4578899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhh
Q 040643 356 MLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLG 435 (968)
Q Consensus 356 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 435 (968)
|+++|+++|++++|.++|++|++||+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~--------------------------------------------------- 192 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASW--------------------------------------------------- 192 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeH---------------------------------------------------
Confidence 99999999999999999999888777655
Q ss_pred HHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhh
Q 040643 436 EQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGR 515 (968)
Q Consensus 436 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 515 (968)
|+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.++
T Consensus 193 ----------------------------n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 193 ----------------------------GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred ----------------------------HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 5555555555666667777777777888999999999999999999999999
Q ss_pred hhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC
Q 040643 516 QIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 516 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 595 (968)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH 675 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 675 (968)
..||++++.+|++.|.+++|+++|..+.+.|+.+|..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
|+.++|+++|++|.+.|+.||.+||++++++|++.|++++|.++|+.|.+++|+.|+..||+|||++|+|+|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCc
Q 040643 756 TEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPG 835 (968)
Q Consensus 756 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g 835 (968)
+++||++|+..+|++|+++|+.+|+++.|+.+++++++++|++.++|+.|+|+|++.|+|++|.++++.|+++|++|.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCCC
Q 040643 836 QSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSD 915 (968)
Q Consensus 836 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~ 915 (968)
|||||+++++|.|++||++||+.++||.+|++|..+|++.||+||+++++||++||+|++.|++||||||||||||+|||
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~ 644 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEecccccCChhhHHHHHHHHhhcceEEEecCCcccccCCCcCCCCCCC
Q 040643 916 SMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968 (968)
Q Consensus 916 ~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~d~w 968 (968)
|+||||+||||||+|||+++||||||+||||||||++|||||+||+|||||||
T Consensus 645 ~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 645 WTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-94 Score=882.87 Aligned_cols=649 Identities=29% Similarity=0.498 Sum_probs=619.9
Q ss_pred CccCCCCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCCCCccchH
Q 040643 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFSWN 80 (968)
Q Consensus 1 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~ 80 (968)
|.+.|+.|+..+|..++++|.+.+.+..|.++|..+++.+..++..++|.++.+|+++|+++.|+++|++|+.||+++||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHh
Q 040643 81 KLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAK 160 (968)
Q Consensus 81 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~ 160 (968)
++|.+|++.|++++|+++|++|...|+.||.+||+.+|++|+..+++. .++++|..+++.|+.||++++|+||.+|++
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA--RGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh--hHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHH
Q 040643 161 NGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240 (968)
Q Consensus 161 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 240 (968)
+|++++|.++|++|+.||.++||+||.+|+++|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|+++|..+
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHH
Q 040643 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVAS 320 (968)
Q Consensus 241 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 320 (968)
.+.|+.||+.+||+||.+|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHH
Q 040643 321 LVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSES 400 (968)
Q Consensus 321 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 400 (968)
++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~-------- 466 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR-------- 466 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999988887775555555555
Q ss_pred HHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHH
Q 040643 401 FQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEAL 480 (968)
Q Consensus 401 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 480 (968)
++|+.++|+
T Consensus 467 -----------------------------------------------------------------------~~g~~~eA~ 475 (857)
T PLN03077 467 -----------------------------------------------------------------------LNNRCFEAL 475 (857)
T ss_pred -----------------------------------------------------------------------HCCCHHHHH
Confidence 455555666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC
Q 040643 481 ELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD 560 (968)
Q Consensus 481 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d 560 (968)
.+|++|.. ++.||..||+++|.+|++.|+++.++++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|+.+ .+|
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d 553 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKD 553 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCC
Confidence 66666654 5899999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHH-HhCCCCChhHHhHHhh
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMII-KTGYDSETEASNSLIT 639 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 639 (968)
+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.++++.|. +.|+.|+..+|+++++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 6899999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGL 717 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 717 (968)
+|+++|++++|.++|++|+ +||..+|++|+.+|..+|+.+.+....+++.+ +.|+.. +|..+.+.|...|+++++.
T Consensus 634 ~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHH
Confidence 9999999999999999997 89999999999999999999999999999998 788755 5777778999999999999
Q ss_pred HHHHHhhhhcCCCCCcch
Q 040643 718 RYFESMSTEYGLVPKPEH 735 (968)
Q Consensus 718 ~~~~~m~~~~~i~p~~~~ 735 (968)
++.+.|++. |+++++..
T Consensus 712 ~vr~~M~~~-g~~k~~g~ 728 (857)
T PLN03077 712 RVRKTMREN-GLTVDPGC 728 (857)
T ss_pred HHHHHHHHc-CCCCCCCc
Confidence 999999665 88887543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-69 Score=646.20 Aligned_cols=476 Identities=27% Similarity=0.418 Sum_probs=447.4
Q ss_pred CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHH
Q 040643 175 CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILG-TVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCN 253 (968)
Q Consensus 175 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 253 (968)
..++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.++++|..+.+.|+.||+.+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999998864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHH
Q 040643 254 ALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRT 333 (968)
Q Consensus 254 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 333 (968)
.|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040643 334 GEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLT 413 (968)
Q Consensus 334 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 413 (968)
++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y---------------------- 300 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY---------------------- 300 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999888777555555555
Q ss_pred CCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 040643 414 PNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQS 493 (968)
Q Consensus 414 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 493 (968)
++.|++++|+++|++|.+.|+.|
T Consensus 301 ---------------------------------------------------------~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 301 ---------------------------------------------------------ALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred ---------------------------------------------------------HhCCCHHHHHHHHHHHHHcCCCC
Confidence 55555566666677777778889
Q ss_pred ChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHh
Q 040643 494 DNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQ 573 (968)
Q Consensus 494 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 573 (968)
|..||++++.+|++.|.++.|+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCCChhHHhHHhhHHHhcCCHHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIK-TGYDSETEASNSLITLYAKCGSIDDAKR 652 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~ 652 (968)
+|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.+++..|.+ .|+.|+..+|+++|++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 7999999999999999999999999999
Q ss_pred HHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCC
Q 040643 653 EFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLV 730 (968)
Q Consensus 653 ~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 730 (968)
+|++|+ .||..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.|++.|.+.|++++|.++++.|.+. |++
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 999998 89999999999999999999999999999976 7786 569999999999999999999999999665 775
Q ss_pred CC
Q 040643 731 PK 732 (968)
Q Consensus 731 p~ 732 (968)
+.
T Consensus 561 k~ 562 (697)
T PLN03081 561 MH 562 (697)
T ss_pred cC
Confidence 43
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-68 Score=635.10 Aligned_cols=528 Identities=16% Similarity=0.246 Sum_probs=435.5
Q ss_pred CCCccchhHHHHHHHhcCCchHHHHHHhhCCCCCeeh-----HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 040643 145 GGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVS-----WVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISS 219 (968)
Q Consensus 145 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 219 (968)
.++...+..++..|+++|++++|.++|++|+.++.+. ++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 3455667778888888888888888888887665544 44556678888888888888888864 88888888
Q ss_pred HHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCC----CCCcccHHHHHHHHHcCCC
Q 040643 220 ALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ----QRDGVTYNSLISGLAQCGY 295 (968)
Q Consensus 220 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 295 (968)
+|.+|++.|+++.|.++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 888888888888888888888888888888888888888888888888888888887 4688888888888888888
Q ss_pred hhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCChhhHhHHHHHHHhcCChhHHHHHH
Q 040643 296 SDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIK--VGISKDIIVEGSMLDLYVKCSDVETAYKFF 373 (968)
Q Consensus 296 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 373 (968)
+++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD------------------------ 578 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD------------------------ 578 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc------------------------
Confidence 888888888888888888888888888888888888888888877765 345555
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHh
Q 040643 374 LTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILR 453 (968)
Q Consensus 374 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 453 (968)
.++|+++|.+|++.|++++|.++|++|.+.|+.|+
T Consensus 579 -------~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~-------------------------------------- 613 (1060)
T PLN03218 579 -------HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT-------------------------------------- 613 (1060)
T ss_pred -------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--------------------------------------
Confidence 45555555555555666666666666776666654
Q ss_pred hCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhh
Q 040643 454 RLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIG 533 (968)
Q Consensus 454 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 533 (968)
..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.|+.||..+|
T Consensus 614 ------~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 614 ------PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred ------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 44667788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCC----CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhh
Q 040643 534 NALISLYARCGRIQEAYLVFNKID----AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANL 609 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 609 (968)
++|+++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||++++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999995 6799999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhH----HHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITL----YAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLF 685 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 685 (968)
|+++.|.++|..|.+.|+.||..+|++|+++ |.+++.+.++...|+.+..++...|+ ++|+.+|
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf 835 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVY 835 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHH
Confidence 9999999999999999999999999999987 45666666666666655555555665 4599999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---CCC
Q 040643 686 EKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM---PIE 762 (968)
Q Consensus 686 ~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~ 762 (968)
++|++.|+.||.+||..++.++...+.++.+..+++.|... +..|+..+|+++++.+++. .++|..++++| ++.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 99999999999999999997766777777766666666322 4556677899999988543 46899999999 778
Q ss_pred CCHH
Q 040643 763 PDAM 766 (968)
Q Consensus 763 p~~~ 766 (968)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 8754
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-66 Score=623.23 Aligned_cols=528 Identities=17% Similarity=0.286 Sum_probs=435.2
Q ss_pred CCCCcccchhhHHhhhhCCCcchHHHhhhccCCCCccc-----hHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHH
Q 040643 41 FDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFS-----WNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFV 115 (968)
Q Consensus 41 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 115 (968)
..++...+..++..++++|++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|..|.. |+..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 34566778889999999999999999999998876654 45567779999999999999999974 9999999
Q ss_pred HHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCC----CCCeehHHHHHHHHHc
Q 040643 116 GVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLC----FKDSVSWVAMISGFSQ 191 (968)
Q Consensus 116 ~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~ 191 (968)
.+|++|++.++.. .+.++|..|.+.|+.||.++||+||.+|+++|+++.|.++|++|. .||.++||+||.+|++
T Consensus 442 ~LL~a~~k~g~~e--~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 442 MLMSVCASSQDID--GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHhCcCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999995 6899999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHH--hcCCCchhHHHHHHHHhhccCChhHHH
Q 040643 192 NGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFK--WGFSSETFVCNALVTLYSRSGNLTSAE 269 (968)
Q Consensus 192 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~ 269 (968)
.|++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 578999999999999999999999999
Q ss_pred HHHhhCCC----CCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 040643 270 QIFSKMQQ----RDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVG 345 (968)
Q Consensus 270 ~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 345 (968)
++|++|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999975 46689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhh
Q 040643 346 ISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRT 425 (968)
Q Consensus 346 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 425 (968)
+.||..+|++||++|+++|++++|.++|++| ...|+.|
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM-------------------------------~~~g~~P----------- 717 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDI-------------------------------KSIKLRP----------- 717 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------------------------------HHcCCCC-----------
Confidence 9888877777777777777666666665554 4333333
Q ss_pred hccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHh
Q 040643 426 CTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISAC 505 (968)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 505 (968)
|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|
T Consensus 718 ---------------------------------dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 718 ---------------------------------TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred ---------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33355666666666666666666666666666777777777777777
Q ss_pred hcccchhhhhhhhHhhhhhcCCCCchhhhhHHHH----HHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHH
Q 040643 506 AGIQALNQGRQIHAQSYISGFSDDLSIGNALISL----YARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGAL 581 (968)
Q Consensus 506 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~----y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 581 (968)
++.|+++.|.++|..|.+.|+.||..+|++|+.+ |.+++...++...|+.+...+...|+ ++|+
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al 832 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWAL 832 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHH
Confidence 7777777777777777777777777777777665 44555555555556555444555555 4599
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---
Q 040643 582 QVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--- 658 (968)
Q Consensus 582 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--- 658 (968)
.+|++|.+.|+.||..||+.+|.++.. .+..+.+..+++.|.
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~-----------------------------------~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQL-----------------------------------PHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcc-----------------------------------cccHHHHHHHHHHhccCC
Confidence 999999999999999999888844333 333445555555543
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 040643 659 -EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698 (968)
Q Consensus 659 -~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 698 (968)
.|+..+||++|.++.+. .++|+.+|++|.+.|+.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 45677888888887433 468999999999999999865
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=404.18 Aligned_cols=799 Identities=13% Similarity=0.052 Sum_probs=498.4
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCCC----CccchHHHH
Q 040643 8 ANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKR----TVFSWNKLI 83 (968)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li 83 (968)
.++..+..+-..+...|++++|...+.++.+.++.+ ......+...|...|++++|...|...... ....+..+.
T Consensus 54 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 132 (899)
T TIGR02917 54 NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK-NQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRG 132 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh-hhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHH
Confidence 455566667777888899999999999988877643 344456677788888888888888766521 234666777
Q ss_pred HHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCC
Q 040643 84 SGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGF 163 (968)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 163 (968)
..+...|++++|...|+++.+.... +...+..+...+...|+.. .+..+...+++.. +.+...+..+...+.+.|+
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 133 LAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFD--EARALIDEVLTAD-PGNVDALLLKGDLLLSLGN 208 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHH--HHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCC
Confidence 7888888888898888888765432 3345666667777788887 7777777776643 3445566777777888888
Q ss_pred chHHHHHHhhC---CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHH
Q 040643 164 IDSAKKVFNNL---CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240 (968)
Q Consensus 164 ~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 240 (968)
++.|...|+.. ...+...|..++..+...|++++|...++.+.+.... +..........+...|+++.|...+..+
T Consensus 209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 287 (899)
T TIGR02917 209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDA 287 (899)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888765 2335567777788888888888888888887765322 2222222222334567777777777776
Q ss_pred HHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCccc
Q 040643 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ--R-DGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVT 317 (968)
Q Consensus 241 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 317 (968)
.+.+.. +...+..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..+.++.... ..+...
T Consensus 288 l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 365 (899)
T TIGR02917 288 LKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAA 365 (899)
T ss_pred HHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 665422 122233344556667777777777766542 2 34456666667777777777777777765442 233445
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCC---CcchHHHHHHHHHhc
Q 040643 318 VASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETE---NVVLWNVMLVAYGQL 394 (968)
Q Consensus 318 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~ 394 (968)
+..+...+...|++++|.+++..+.+.. +.+...+..+...|...|++++|.+.|+..... +...+..++..+.+.
T Consensus 366 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 6666666677777777777777766653 334555666666777777777777777665432 234455566667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhh---------------------CChHHHHHHHh
Q 040643 395 NDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL---------------------GNLNTAQEILR 453 (968)
Q Consensus 395 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~---------------------~~~~~a~~~~~ 453 (968)
|++++|+.+++++... .+++..++..+...+...|+.+.+.+.+... |++++|.+.++
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776553 2334455666666666666655555554432 45555555555
Q ss_pred hCC---CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCc
Q 040643 454 RLP---EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDL 530 (968)
Q Consensus 454 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 530 (968)
++. +.+..+++.+...+.+.|+.++|..+|+++.+.+ +.+...+..+...+...|+++.+.+++..+.+.. +.+.
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 601 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSP 601 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence 443 2344556666666666666666666666665532 2233445555566666666666666666665433 2344
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHh
Q 040643 531 SIGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAA 607 (968)
Q Consensus 531 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 607 (968)
..+..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 5566666666666666666666665432 244456666666666666666666666665432 223445555556666
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNAMITGFSQHGYALEAINLF 685 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~ 685 (968)
..|++++|..++..+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..+...|+.++|++.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666666665543 3345555566666666666666666666654 344455556666666666666666666
Q ss_pred HHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 040643 686 EKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP 763 (968)
Q Consensus 686 ~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p 763 (968)
+++.+ ..|+ ...+..+...|...|+.++|..+|+.+.+.. +++...+..+..++...|+ ++|.++++++ ...|
T Consensus 760 ~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 760 EAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 66665 2343 4455556666666666666666666664431 2235556666666666666 6666666655 3334
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 764 D-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 764 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+ ..+|..+...+...|+++.|...++++++++|.++..+..++.+|...|++++|.++.+.|
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 4555555555666666666666666666666666666666666666666666666665555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=395.68 Aligned_cols=803 Identities=13% Similarity=0.062 Sum_probs=626.3
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCC--C-CccchHHHHHH
Q 040643 9 NSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSK--R-TVFSWNKLISG 85 (968)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~ 85 (968)
++..+-..-..+...|++..|...+.+.++..+. +...+..+...|.+.|++++|...|+.... | +...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 99 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARA 99 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHH
Confidence 4444555556677789999999999998876433 456677888899999999999999988753 2 33455667788
Q ss_pred HHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCch
Q 040643 86 FVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFID 165 (968)
Q Consensus 86 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 165 (968)
+...|++++|+..+..............+..+-.++...|+.. .+...+..++.... .+...+..+...+...|+++
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~ 176 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLE--LAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFD 176 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHH
Confidence 9999999999999976543333333445566667777888888 88888888876543 34567788888899999999
Q ss_pred HHHHHHhhC---CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHH
Q 040643 166 SAKKVFNNL---CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFK 242 (968)
Q Consensus 166 ~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 242 (968)
+|.++++.+ ..++...|..+...+...|++++|...|++..... +.+..++..+...+...|+++.|.+.+..+.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 177 EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999876 33455678888889999999999999999987753 34566777888888899999999999999888
Q ss_pred hcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCC---cccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHH
Q 040643 243 WGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRD---GVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVA 319 (968)
Q Consensus 243 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 319 (968)
.... +..........+...|++++|...|+++.+.+ ...+..+...+.+.|++++|...|.+..... +.+...+.
T Consensus 256 ~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 333 (899)
T TIGR02917 256 KAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARR 333 (899)
T ss_pred hCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 6533 33344444455677899999999998876432 2344555667888999999999999987653 23345566
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCC
Q 040643 320 SLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLND 396 (968)
Q Consensus 320 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 396 (968)
.+...+...|+++.|.+.+..+.+.. +.+...++.+...|.+.|++++|.+.|+++.. .+...|..+...+...|+
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 77778889999999999999988765 45677888999999999999999999988653 356678888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhh---------------------CChHHHHHHHhhC
Q 040643 397 LSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL---------------------GNLNTAQEILRRL 455 (968)
Q Consensus 397 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~---------------------~~~~~a~~~~~~~ 455 (968)
+++|++.|+++.+....+. .....++..+...|+.+.+..++... |+.++|...|++.
T Consensus 413 ~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELG-RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred hHHHHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999887653322 33444566677777777766655443 7777787777765
Q ss_pred C---CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchh
Q 040643 456 P---EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSI 532 (968)
Q Consensus 456 ~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 532 (968)
. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+.+.+...+..+.+.+. .+...
T Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 569 (899)
T TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEP 569 (899)
T ss_pred HhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhH
Confidence 3 3455567777778888888888888888887653 33456667777777778888888888888776653 34566
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhh
Q 040643 533 GNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANL 609 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 609 (968)
+..++..|.+.|+.++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.+.. ..+...+..+...+...
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 67788888888888888888887753 356678888888999999999999998887653 22445566777778888
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
|+.++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+. .++...|..+...+...|++++|++.|+
T Consensus 649 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 649 KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999998888887753 4457788888888999999999999988876 3466788888889999999999999999
Q ss_pred HHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-C
Q 040643 687 KMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-D 764 (968)
Q Consensus 687 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~ 764 (968)
++.. ..|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..++++|.+.|+.++|.+.++++ ...| +
T Consensus 728 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 728 KALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 9988 5677777888888999999999999999988664 2344778888999999999999999999987 3344 5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
+.++..+...+...|+ +.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+.+
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888999999999999 789999999999999999999999999999999999999888776644
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=300.54 Aligned_cols=106 Identities=56% Similarity=0.987 Sum_probs=99.8
Q ss_pred cccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhh--------cccchhccHHHHH
Q 040643 835 GQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQK--------DPCVYIHSEKLAI 906 (968)
Q Consensus 835 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 906 (968)
||||+++ |.|++||++||+. ++..++...||.|+++.++||++++++ +..+++|||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999998 9999999999998 555677788999999999999988776 6799999999999
Q ss_pred HHHhhcCCCCCCEEEeccc-ccCChhhHHHHHHHHhhcceEEEecCCcccccC
Q 040643 907 AFGLLSLSDSMPILVIKNL-RVCNDCHNWIKFVSKISNRTIVVRDANRFHHFE 958 (968)
Q Consensus 907 ~~~~~~~~~~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~ 958 (968)
|||||+| ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.6e-22 Score=248.24 Aligned_cols=451 Identities=11% Similarity=0.062 Sum_probs=320.9
Q ss_pred hHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040643 331 FRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIFKQM 407 (968)
Q Consensus 331 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 407 (968)
...+...+....+....|+. ....+...+...|++++|...|++... .+...+..+...|.+.|++++|+..|++.
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A 329 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKA 329 (1157)
T ss_pred HHHHHHHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555544443333332 223345667788999999999987653 36678889999999999999999999988
Q ss_pred HhcCCCCCc-cchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeH--HHHHHHHHhcCChhHHHHHHH
Q 040643 408 QTEGLTPNQ-YTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSW--TAMIVGFVQHGMFGEALELFE 484 (968)
Q Consensus 408 ~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~ 484 (968)
.+....... ..+..++.. ...| ......+.+.|++++|+..|+
T Consensus 330 l~~~p~~~~~~~~~~ll~~----------------------------------~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 330 LALDPHSSNRDKWESLLKV----------------------------------NRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HHhCCCccchhHHHHHHHh----------------------------------hhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 765322111 111111110 0011 122345567777778888877
Q ss_pred HHHhcCCCC-ChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC---
Q 040643 485 EMENQGIQS-DNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD--- 560 (968)
Q Consensus 485 ~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d--- 560 (968)
+..+. .| +...+..+-..+...|+++.|.+.+..+++.... +...+..+...|. .++.++|...++.++...
T Consensus 376 ~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 376 QARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence 77764 33 3344555666677777777787777777765433 3445556666664 457788888887765331
Q ss_pred ---------cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC
Q 040643 561 ---------NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSE 630 (968)
Q Consensus 561 ---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 630 (968)
...+..+...+...|++++|++.|++..+. .|+. ..+..+...+.+.|+.++|...++.+++.. +.+
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~ 528 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PND 528 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 123555677788899999999999998865 5654 445567778889999999999999988743 334
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCCCC----CHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMPEK----NEV---------SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH 697 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----d~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~ 697 (968)
......+...+.+.|+.++|...++.++.. +.. .+..+...+...|+.++|+++++. .+++.
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 555555666678899999999999988632 111 123456778899999999999872 23345
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSA 774 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~ 774 (968)
..+..+...+...|++++|+..|+...+. .|+ ...+..++.+|...|++++|++.++.. ...|+ ..++..+..+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 56777888999999999999999988653 565 778888999999999999999999987 35565 6677777778
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcc------hHHHHHHHHhhcCCcchHHHH-HHHHHhCCCc
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSA------TYVLLSNIYAAAGKWDCRDQI-RQIMKDRGVK 831 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~-~~~m~~~g~~ 831 (968)
+...|+.+.|...++++++..|+++. .+..++.+|...|++++|... ++.|...|+.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 88999999999999999999876653 556679999999999999986 6666656553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-22 Score=247.79 Aligned_cols=601 Identities=11% Similarity=0.043 Sum_probs=387.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCh
Q 040643 186 ISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNL 265 (968)
Q Consensus 186 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 265 (968)
++-+...++.+.|.+.+.++.... +-|+..+..+...+...|+.++|.+.+..+.+.... +........
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~--------- 103 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRT--------- 103 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHH---------
Confidence 345556777777777777766531 224455666666666777777777777777665521 111110000
Q ss_pred hHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040643 266 TSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCV-TVASLVSACASVGAFRTGEQLHSYAIKV 344 (968)
Q Consensus 266 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 344 (968)
.+. ...++...+..+...+.+.|++++|++.|+++.... .|+.. ............++.++|...++.+++.
T Consensus 104 -----~~~-~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 104 -----TML-LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred -----HHH-hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 000 000111112223334445555555555555554321 11111 0000011112235555555555555554
Q ss_pred CCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCC-----------------------cchHHHHHHHHHhcCCHHHHH
Q 040643 345 GISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETEN-----------------------VVLWNVMLVAYGQLNDLSESF 401 (968)
Q Consensus 345 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-----------------------~~~~~~li~~~~~~g~~~~A~ 401 (968)
. +.+......+..++...|+.++|...|+++.... +..+...+..+-.....++|.
T Consensus 177 ~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 177 Y-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 3 2334445555555555555555555555543211 111122222222222334455
Q ss_pred HHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCC---CCCceeHHHHHHHHHhcCChhH
Q 040643 402 QIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLP---EDDVVSWTAMIVGFVQHGMFGE 478 (968)
Q Consensus 402 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 478 (968)
..+.++......|+.... .. + ..+...|++++|...|++.. +.+...+..+...|.+.|++++
T Consensus 256 ~~L~~~~~~~~dp~~~~~---~~----------G-~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~e 321 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRAR---AQ----------G-LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR 321 (1157)
T ss_pred HHHHHHHHhccCcchHHH---HH----------H-HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 555444333222221110 00 1 22233477777777776654 3467788999999999999999
Q ss_pred HHHHHHHHHhcCCCC-ChhhHH------------HHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCC
Q 040643 479 ALELFEEMENQGIQS-DNIGFS------------SAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGR 545 (968)
Q Consensus 479 A~~l~~~m~~~g~~p-d~~t~~------------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 545 (968)
|+..|++..+..-.. +...+. ..-..+...|++++|.+.+..+++.... +...+..|...|...|+
T Consensus 322 A~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 322 AVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 999999988753221 111111 1123566789999999999999987643 55677788999999999
Q ss_pred HHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC--------CcchHHHHHHHHhhhhhHHH
Q 040643 546 IQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA--------NLYTFGSVVSAAANLANIKQ 614 (968)
Q Consensus 546 ~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~ 614 (968)
+++|.+.|++.... +...+..+...|. .++.++|+.+++.+......+ ....+......+...|+.++
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 99999999987643 4456777777774 467899999988765431110 01123445566778899999
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040643 615 GKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKH 691 (968)
Q Consensus 615 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 691 (968)
|.+.+..+++.. +.+..++..+...|.+.|++++|...|+++. .| +...+..+...+...|+.++|+..++++...
T Consensus 480 A~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~ 558 (1157)
T PRK11447 480 AAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA 558 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch
Confidence 999999998864 3456778889999999999999999999874 33 5666666666778899999999999886543
Q ss_pred CCCCChH---------HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 040643 692 DVMPNHV---------TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PI 761 (968)
Q Consensus 692 g~~Pd~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~ 761 (968)
...++.. .+..+..++...|+.++|..+++. .+++...+..+.+.+.+.|++++|.+.+++. ..
T Consensus 559 ~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 559 QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222221 234556778899999999999872 2445667788999999999999999999987 55
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 762 EPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 762 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.|+ ...+..+...+...|+.+.|+..++++++..|+++..+..++++|...|++++|.++.+.+...
T Consensus 633 ~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 633 EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 665 7889999999999999999999999999999999999999999999999999999987776553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-20 Score=221.53 Aligned_cols=650 Identities=13% Similarity=0.055 Sum_probs=388.0
Q ss_pred CCcchHHHhhhccCC--C-CccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHH
Q 040643 59 GDLDSAMKIFDDMSK--R-TVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQI 135 (968)
Q Consensus 59 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i 135 (968)
|++++|...|+...+ | +...+..+...|.+.|+.++|+..+++..+. .|+...|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~L----------------- 118 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSL----------------- 118 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH-----------------
Confidence 666666666665532 2 2345566666666666666666666665543 23322222222
Q ss_pred HHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCC--CC-CeehHHHHHHH--------HHcCCCHHHHHHHHHH
Q 040643 136 HGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLC--FK-DSVSWVAMISG--------FSQNGYEREAILLFCQ 204 (968)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~ 204 (968)
+..++.+.|..+++++. .| +...+..+... |.+.+ +|.+.++
T Consensus 119 -----------------------a~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~- 171 (987)
T PRK09782 119 -----------------------AAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN- 171 (987)
T ss_pred -----------------------HHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-
Confidence 11155555555555551 12 12222222222 44443 3333333
Q ss_pred HHhcCCCCChhhHHHH-HHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhc-cCChhHHHHHHhhCCCCCccc
Q 040643 205 MHILGTVPTPYAISSA-LSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSR-SGNLTSAEQIFSKMQQRDGVT 282 (968)
Q Consensus 205 m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~ 282 (968)
.......|++.+.... .+.+...++++.+..++..+.+.+.. +......|-.+|.. .++ +++..+++...+.|...
T Consensus 172 lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l 249 (987)
T PRK09782 172 DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQS 249 (987)
T ss_pred HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHH
Confidence 2222233334433333 56666666666666666666666522 23334455556666 355 77777766544457778
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhccccC-CCcccHHHHHHHHhccCChHH-HHHHHHHHHHhCCCCC-hhhHhHHHHH
Q 040643 283 YNSLISGLAQCGYSDKALELFEKMQLDCLK-PDCVTVASLVSACASVGAFRT-GEQLHSYAIKVGISKD-IIVEGSMLDL 359 (968)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~~g~~~~-~~~~~~Li~~ 359 (968)
+.++...|.+.|+.++|.++++++...-.. |+..++.-++.-. +.... +..-+ .+ .+.++ ....-.+++.
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~---~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKY---SANPVQALANY---TV-QFADNRQYVVGATLPV 322 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhc---cCchhhhccch---hh-hhHHHHHHHHHHHHHH
Confidence 888888888888888888888887654333 5555555444332 22211 11000 01 11111 2334455888
Q ss_pred HHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHH
Q 040643 360 YVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIH 439 (968)
Q Consensus 360 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 439 (968)
+.+.++++.|.++.+ ....+.. .-.-..+....+...++...+..|.+.. |
T Consensus 323 ~~~~~~~~~~~~~~~-~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~------------------------- 373 (987)
T PRK09782 323 LLKEGQYDAAQKLLA-TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQE--P------------------------- 373 (987)
T ss_pred HHhccHHHHHHHHhc-CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcC--C-------------------------
Confidence 999999998887744 3322321 1111112223355555655555554331 0
Q ss_pred HhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhc-C-CCCChhhHHHHHHHhhcccchhhhhhh
Q 040643 440 TQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQ-G-IQSDNIGFSSAISACAGIQALNQGRQI 517 (968)
Q Consensus 440 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~~~~~~~~a~~i 517 (968)
.+....--+--...+.|+.++|..+|+..... + ..++......++..+...+.+.....+
T Consensus 374 ------------------~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 374 ------------------ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 01111111222235677888888888877652 1 223333333566666665553333322
Q ss_pred hHhhhhhcCCCCchhhhhHHHHH-HHcCCHHHHHHHHHhCCCC-CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC
Q 040643 518 HAQSYISGFSDDLSIGNALISLY-ARCGRIQEAYLVFNKIDAK-DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~Li~~y-~k~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 595 (968)
..... +++...-..+..-+ ...+..+.+...+..++.. +...|..+..++.. ++.++|+..|.+.... .|+
T Consensus 436 ~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 436 AILSK----PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred HHhcc----ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 22111 11111001111100 0111122222222222221 55677777777776 7888888877776654 466
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCH---HHHHHHHHHH
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNE---VSWNAMITGF 672 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~---~~~~~li~~~ 672 (968)
......+..++...|+.++|...+..+... +|+...+..+...+.+.|++++|.+.|+...+.++ ..+..+....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 554444444556788889888888876553 34444456667788889999999999987763322 2222233334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHH
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSR 751 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~e 751 (968)
...|++++|+..|++.++ +.|+...+..+..++.+.|++++|...|+.... +.|+ ...+..+..+|...|++++
T Consensus 587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 455999999999999998 788877888899999999999999999998754 4676 6778888889999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 752 AREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 752 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
|.+.+++. ...|+ +.+|..+..++...|+++.|+..++++++++|+++......+++.....+++.|.+-.+.
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999887 56665 788889999999999999999999999999999999999999999999999999885443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-19 Score=217.06 Aligned_cols=334 Identities=9% Similarity=-0.009 Sum_probs=222.0
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhh-c-CCCCchhhhhHHHHHHHcCCHHHHHH
Q 040643 474 GMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYIS-G-FSDDLSIGNALISLYARCGRIQEAYL 551 (968)
Q Consensus 474 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~~~~A~~ 551 (968)
+...++...++.|.+.. +-+....--+---....|+.++|.+++...... + -..+..+.+-|+..|.+.+.+....+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 44555555555554431 112111212222233455566666666655542 1 11233344456666666666333333
Q ss_pred H---HHhCCCCCcccHHHHHHHHHhcCChhhH---HHHHHHhhhcCCcCC--cchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040643 552 V---FNKIDAKDNISWNGLISGFAQSGYCEGA---LQVFSQMTQVGVQAN--LYTFGSVVSAAANLANIKQGKQVHAMII 623 (968)
Q Consensus 552 ~---f~~m~~~d~~~~~~li~~~~~~g~~~~A---~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 623 (968)
+ -..+..+.... -.|+..++ ...+.... +..|+ .......+..|...+..++|...+....
T Consensus 435 ~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al 503 (987)
T PRK09782 435 VAILSKPLPLAEQRQ---------WQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAE 503 (987)
T ss_pred HHHhccccccchhHH---------HHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 2 22232222211 12222222 22232322 22344 3332233333444478888998777776
Q ss_pred HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HH
Q 040643 624 KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TF 700 (968)
Q Consensus 624 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~ 700 (968)
... |+......+...+...|++++|...|+++. .|+...|..+...+.+.|+.++|+..|++.++ ..|+.. .+
T Consensus 504 ~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~--l~P~~~~l~ 579 (987)
T PRK09782 504 QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ--RGLGDNALY 579 (987)
T ss_pred HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCccHHHH
Confidence 643 454444444555678999999999999766 35556788888889999999999999999998 456654 34
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH 778 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 778 (968)
..+.......|++++|...|+... .+.|+...|..+..++.+.|+.++|.+.+++. ...|+ ...+..+..++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 445556667899999999999875 45788889999999999999999999999987 67787 66777777789999
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
|+.+.|...++++++++|+++..+..++++|...|+.++|....+..-
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998755543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-18 Score=181.93 Aligned_cols=382 Identities=13% Similarity=0.140 Sum_probs=314.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCc
Q 040643 381 VVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDV 460 (968)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 460 (968)
..+|..+...+-..|++++|+.+++.|.+.. +..+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~---------------------------------------------p~fi 150 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK---------------------------------------------PKFI 150 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC---------------------------------------------chhh
Confidence 4567778888888888888888888877532 2244
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHh-hcccchhhhhhhhHhhhhhcCCCCchhhhhHHHH
Q 040643 461 VSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISAC-AGIQALNQGRQIHAQSYISGFSDDLSIGNALISL 539 (968)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 539 (968)
..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+-+.-. ...|.+.+++..+-.+++.... =..+|+.|...
T Consensus 151 da~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~ 227 (966)
T KOG4626|consen 151 DAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCV 227 (966)
T ss_pred HHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchH
Confidence 5677788888888888888888888776 567665554433322 3356777777777776665432 24568889999
Q ss_pred HHHcCCHHHHHHHHHhCCCCC---cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHH
Q 040643 540 YARCGRIQEAYLVFNKIDAKD---NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 540 y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a 615 (968)
+-..|++..|...|++...-| ...|-.|...|...+.+++|+..+.+.... .|+. +.+..+...|-..|.++.|
T Consensus 228 f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 228 FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHH
Confidence 999999999999999877544 347888999999999999999998887654 6764 5566666667889999999
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHD 692 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 692 (968)
...++..++.. +.-...|+.|..++-..|++.+|.+.+++.. .| -..+.+.|...|...|..++|..+|....+
T Consensus 306 I~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~-- 382 (966)
T KOG4626|consen 306 IDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE-- 382 (966)
T ss_pred HHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--
Confidence 99999988843 2236688999999999999999999999876 34 456889999999999999999999999999
Q ss_pred CCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHH
Q 040643 693 VMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVW 768 (968)
Q Consensus 693 ~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~ 768 (968)
+.|. ...++.|.+.+-+.|.+++|+..+++.. .|.|+ .+.|+.|...|-..|+.+.|.+.+.+. .+.|. +...
T Consensus 383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 8998 5689999999999999999999999664 78999 889999999999999999999999887 78888 7888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchH
Q 040643 769 RTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 769 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 818 (968)
+.|.+.++..||+++|+...+.+++++|+.+.+|-.|.....---.|.+-
T Consensus 460 sNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 460 SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred hhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999998888888888874
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-16 Score=166.06 Aligned_cols=356 Identities=15% Similarity=0.185 Sum_probs=298.9
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHH
Q 040643 460 VVSWTAMIVGFVQHGMFGEALELFEEMENQGIQS-DNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALIS 538 (968)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 538 (968)
..+|..+.+.+-..|++++|+.+++.|++. +| ....|..+-.++...|+.+.+.+.+...++.++. ...+.+.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhH
Confidence 347888999999999999999999999984 56 4567888888999999999999999998876542 2334455667
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHH
Q 040643 539 LYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQ 614 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 614 (968)
.....|++++|...+.+..+. =.+.|+.|...+-.+|+..+|+..|.+.... .|+- -.|..+-..+...+..+.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 777889999999888765533 3578999999999999999999999998754 5653 345555556666666666
Q ss_pred HHHHHHHHHHhCCCC-ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 615 GKQVHAMIIKTGYDS-ETEASNSLITLYAKCGSIDDAKREFLEMP--EKN-EVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 615 a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
|...+..+.. ..| ...++..|...|-..|.++-|+..+++.. +|+ ...||.|..++-..|+..+|...|.+.+.
T Consensus 271 Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 6666655544 344 46677788889999999999999999877 453 67999999999999999999999999999
Q ss_pred CCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HH
Q 040643 691 HDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AM 766 (968)
Q Consensus 691 ~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~ 766 (968)
+.|+. -..+.|...+...|.+++|..+|... +.+.|. ....+.+..+|-..|++++|..-+++. .++|+ +.
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~a---l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKA---LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHH---HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 88985 47999999999999999999999966 466788 777899999999999999999999987 89999 78
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH-HHHHHh
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI-RQIMKD 827 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 827 (968)
.++.+-+.+...|+++.|.....+++..+|.-+.++..|+.+|-.+|+..+|..- +..+|-
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 8999999999999999999999999999999999999999999999999999885 555543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=184.47 Aligned_cols=244 Identities=11% Similarity=0.069 Sum_probs=161.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCC----chhhhhHHH
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDD----LSIGNALIS 538 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~Li~ 538 (968)
+..+...|.+.|++++|+.+|+++.+. -+++..++..+...+...|+++.|.+.+..+.+.+..+. ...+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 444455555555555555555555443 122334444455555555555555555555544432221 113445677
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHH
Q 040643 539 LYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 615 (968)
.|.+.|+.++|.+.|+++.+. +...+..+...|.+.|++++|+++|+++...+......++..+..++...|+.++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 788888888888888876532 34567778888888899999999988887653222234566777788888888888
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNAMITGFSQ---HGYALEAINLFEKMKK 690 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~ 690 (968)
...+..+.+.. |+...+..++..|.+.|++++|.++|+++. .|+..+++.++..+.. +|+..+++.+|++|.+
T Consensus 269 ~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 269 LEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 88888777653 455556778888888888888888887665 5777788877776654 5578888888888888
Q ss_pred CCCCCChHHHHHHHHHHcccCcHHH
Q 040643 691 HDVMPNHVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 691 ~g~~Pd~~t~~~ll~a~~~~g~~~~ 715 (968)
.+++||+. .+|+|.|.+-+
T Consensus 347 ~~~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 347 EQLKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred HHHhCCCC------EECCCCCCCCc
Confidence 77777765 45777776644
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-15 Score=179.82 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=193.8
Q ss_pred cCChhhHHHHHHHhhhcC-CcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVG-VQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAK 651 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 651 (968)
.+++++|++.|++....+ ..|+. ..+..+-..+...|++++|...+..+++.. +.+...+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 367888888888887654 33433 345555556667888888888888887743 223557778888889999999999
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 652 REFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 652 ~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
..|+++. ..+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..++...|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9998765 34678899999999999999999999999998 67864 46777788889999999999999987653
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-------HHHH-HHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-------AMVW-RTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-------~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
.|+ ...|..+..++...|++++|.+.+++. .+.|+ ...| +..+..+...|+++.|+...+++++++|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455 678888999999999999999999885 44443 1111 22222234469999999999999999999
Q ss_pred CcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 798 DSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 798 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+...+..|+.+|...|++++|.+..+...+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999997665543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.2e-17 Score=181.58 Aligned_cols=292 Identities=13% Similarity=0.087 Sum_probs=210.9
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC---cchHHHHHHHHhhhhhH
Q 040643 539 LYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN---LYTFGSVVSAAANLANI 612 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 612 (968)
.+...|++++|...|+++.+. +..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445666777777777766533 334566667777777777777777777765432221 13455556666777777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHH
Q 040643 613 KQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--KN------EVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 613 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d------~~~~~~li~~~~~~g~~~~A~~l 684 (968)
+.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+ |+ ...|..+...+...|+.++|++.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777766542 34566777788888888888888888887652 21 12456677778888999999999
Q ss_pred HHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 040643 685 FEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGCLSRAREFTEQM-P 760 (968)
Q Consensus 685 ~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~~~eA~~~~~~m-~ 760 (968)
|+++.+ ..|+. .++..+...+.+.|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998887 45664 46777778888889999999999888643 343 456778888899999999999998887 5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh--cCCcchHHHHHHHHHhCCCccCCcc
Q 040643 761 IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA--AGKWDCRDQIRQIMKDRGVKKEPGQ 836 (968)
Q Consensus 761 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~g~~k~~g~ 836 (968)
..|+...+..+...+...|+.+.|...++++++..|++.....++...+.. .|+.+++..+.+.|.+++++..|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 677766667777888899999999999999999999887554444433322 5699999999999999999888873
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.4e-14 Score=156.47 Aligned_cols=548 Identities=12% Similarity=0.087 Sum_probs=322.2
Q ss_pred chHHHHHHhhCC--CCCeehHHHHHHH--HHcCCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHhhcccCchHHHHHHH
Q 040643 164 IDSAKKVFNNLC--FKDSVSWVAMISG--FSQNGYEREAILLFCQMHIL--GTVPTPYAISSALSACTKIELFEIGEQFH 237 (968)
Q Consensus 164 ~~~A~~~f~~~~--~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 237 (968)
++.|.+.|.... .|+-+. ..+..+ ....|++..|+.+|...... ..+||+..- +-..+.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 578888887762 232221 112222 33467889999999886543 345554321 123445778888888888
Q ss_pred HHHHHhcCCCchhHHHHHHHHh---hcc---CChhHHHHHHhhCC---CCCcccHHHHHHHHHcCCChhHHHHHHHHhhc
Q 040643 238 GLIFKWGFSSETFVCNALVTLY---SRS---GNLTSAEQIFSKMQ---QRDGVTYNSLISGLAQCGYSDKALELFEKMQL 308 (968)
Q Consensus 238 ~~~~~~g~~~~~~~~~~Li~~y---~~~---g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 308 (968)
..+.+.. | ...++++..+ ... ..+..+..++...- ..|++..|.|.+-|...|+++.+..+...+..
T Consensus 223 ~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 8877654 2 3333333221 112 23444555554432 34788888899999999999999999888765
Q ss_pred cccC--CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC--C-Ccch
Q 040643 309 DCLK--PDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET--E-NVVL 383 (968)
Q Consensus 309 ~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~ 383 (968)
.... .-...|-.+-+++-..|+++.|...|....+..-..-+.-+--|..+|.+.|+++.|...|+.+.. | +..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 4311 112346677888888999999999988877664333344456788999999999999999998764 3 3455
Q ss_pred HHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhh-CCCC
Q 040643 384 WNVMLVAYGQLND----LSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRR-LPED 458 (968)
Q Consensus 384 ~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~ 458 (968)
-..+...|+..+. .+.|..++.+..+.- +.|...|..+-..+-. ...+..++-+..|..++.. +.+.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-------~d~~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-------TDPWASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-------cChHHHHHHHHHHHHHHHHcCCCC
Confidence 5556666666653 344444444433321 1222233332222222 2222223445556644433 3446
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCCh-----hhHHHHHH-HhhcccchhhhhhhhHhhhhhcCCCC
Q 040643 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQ---GIQSDN-----IGFSSAIS-ACAGIQALNQGRQIHAQSYISGFSDD 529 (968)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~-----~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~ 529 (968)
.+...|.+...+...|.+++|...|...... -..+|. .|...-+. ..-..++.+.|.+++..+++..+
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp--- 527 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP--- 527 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc---
Confidence 6778899999999999999999999998765 233444 22222233 33445678888888888887643
Q ss_pred chhhhhHHHHHHHc-------CCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhc-CCcCCcch
Q 040643 530 LSIGNALISLYARC-------GRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQV-GVQANLYT 598 (968)
Q Consensus 530 ~~~~~~Li~~y~k~-------g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t 598 (968)
..|++|.+. +...+|...+.... ..|+..|+-+...|.....+..|.+-|....+. ...+|..+
T Consensus 528 -----~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 528 -----GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred -----hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 245555555 45567777776554 346667777777888888887777766665443 22356555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc
Q 040643 599 FGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQH 675 (968)
Q Consensus 599 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~ 675 (968)
..+|-+.|.+. +.. +.... -...+..++|.+.|.++. .+|...=|-+.-.++..
T Consensus 603 liaLGN~~~~~------------l~~---~~rn~--------ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 603 LIALGNVYIQA------------LHN---PSRNP--------EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred HHHhhHHHHHH------------hcc---cccCh--------HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 55554433221 000 00000 112234555555555444 23444555555556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
|++.+|..+|.+.++... -+.-+|..+...|...|.+-.|++.|+...+.+.-.-+.+...||..++.++|.+.+|.+.
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 666666666666655432 2233455666666666666666666666555555555566666666666666666666654
Q ss_pred HHh
Q 040643 756 TEQ 758 (968)
Q Consensus 756 ~~~ 758 (968)
...
T Consensus 739 ll~ 741 (1018)
T KOG2002|consen 739 LLK 741 (1018)
T ss_pred HHH
Confidence 433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-14 Score=158.80 Aligned_cols=697 Identities=11% Similarity=0.033 Sum_probs=393.0
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCC
Q 040643 96 LGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLC 175 (968)
Q Consensus 96 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 175 (968)
.+++-.|...|+.|+.+||.++|-.||..|++. .+. |+..|.-..++....+++.++.+....++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdie--aat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIE--AAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCc--ccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 356778888999999999999999999999998 676 9999988888888899999999999999887776
Q ss_pred CCCeehHHHHHHHHHcCCCHHHHHHHHHH-HH-------hcCCCCChhhHHHHHHhhcccC-c------hHHHHHHHHHH
Q 040643 176 FKDSVSWVAMISGFSQNGYEREAILLFCQ-MH-------ILGTVPTPYAISSALSACTKIE-L------FEIGEQFHGLI 240 (968)
Q Consensus 176 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~ 240 (968)
.|-..+|+.|..+|.++|+... ++.-++ |. ..|+.--..-|...++.|...- + ..--+.+++..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5667799999999999998765 333333 22 1233222233333333332211 1 11123344444
Q ss_pred HHhcCCCchhHHHHHHHHhhcc-----CChhHHHHHHhhCC-CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCC
Q 040643 241 FKWGFSSETFVCNALVTLYSRS-----GNLTSAEQIFSKMQ-QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPD 314 (968)
Q Consensus 241 ~~~g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 314 (968)
++.+....+..++.=...+.+. ..+++-...-.... .++..++.+++.+-..+|+.+.|..++.+|.+.|+..+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 4444211111111111111221 12222222222223 37888999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhc
Q 040643 315 CVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQL 394 (968)
Q Consensus 315 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 394 (968)
.+-|..++-+ .++......+..-|.+.|+.|+..++...+--..+.|....+....+.-..-....+..+..+..-+
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 9888888765 7888888899999999999999988887776666655533322211110000111223333321111
Q ss_pred CCH-----HHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhh--------C-C----hHHHHHHHhhCC
Q 040643 395 NDL-----SESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL--------G-N----LNTAQEILRRLP 456 (968)
Q Consensus 395 g~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~--------~-~----~~~a~~~~~~~~ 456 (968)
.+. .-....+.+..-.|+......|....+ ....|.-+...++-..+ + + -..+.+.|.+..
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 111 111222222222233322222222111 22233333333333333 1 0 112334444443
Q ss_pred CCCce-eHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCh----------------------------hhHHHHHHH
Q 040643 457 EDDVV-SWTAMIVGFVQ---HGMFGEALELFEEMENQGIQSDN----------------------------IGFSSAISA 504 (968)
Q Consensus 457 ~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~----------------------------~t~~~ll~a 504 (968)
.+... .++ .-.+... .....+..++.... .||. ..-..++..
T Consensus 395 ~~~~~~i~~-~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 395 RHICSRIYY-AGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred hhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 33211 111 1111111 11222222222222 1221 112233334
Q ss_pred hhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC------cccHHHHHHHHHhcCChh
Q 040643 505 CAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD------NISWNGLISGFAQSGYCE 578 (968)
Q Consensus 505 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~ 578 (968)
|.+..+...+.+.-+.....-+ ...|..|++......+.++|..+.++...+| ..-+..+.....+.+...
T Consensus 469 l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 4443333333322222111111 1567889999999999999999999988774 345788888999999999
Q ss_pred hHHHHHHHhhhcCC-cCC-cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhc
Q 040643 579 GALQVFSQMTQVGV-QAN-LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLE 656 (968)
Q Consensus 579 ~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~ 656 (968)
.+..++.+|.+.-. .|+ ..++-.+++.-+..|..+.-+++++.+...|+..+ .-|+....+.++...|.++++.
T Consensus 546 dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~ 621 (1088)
T KOG4318|consen 546 DLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEP 621 (1088)
T ss_pred HHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchH
Confidence 99999999987422 222 34555677778888999999999999988887553 3345556677888888888775
Q ss_pred CC---CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCC--CCCChHHH-HHHH-----HHHcccCcHHHHHHH
Q 040643 657 MP---EK---NEVSWNAMITGFSQHGYALEAINLFEKMK---KHD--VMPNHVTF-VGVL-----SACSHVGLVNEGLRY 719 (968)
Q Consensus 657 ~~---~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g--~~Pd~~t~-~~ll-----~a~~~~g~~~~a~~~ 719 (968)
.. ++ +...|..++.-- ...+.+++..+-.... +.| ..|-.++= -++. .-|...|.+.--...
T Consensus 622 ~~qkyk~~P~~~e~lcrlv~ke-~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll 700 (1088)
T KOG4318|consen 622 EEQKYKPYPKDLEGLCRLVYKE-TTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELL 700 (1088)
T ss_pred HHHHhcCChHHHHHHHHHHHhh-ccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHH
Confidence 54 22 223333332210 0112222222211111 111 00000000 0000 011112222111122
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCC
Q 040643 720 FESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHK---NMEIGEYAANHLLELEP 796 (968)
Q Consensus 720 ~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~p 796 (968)
.+.+.+ ..+..-+...|-+.|+++.|..+++++++-|+......|+.-.+.+. |+..+...-+++-++.|
T Consensus 701 ~elt~~-------lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~ 773 (1088)
T KOG4318|consen 701 LELTHE-------LGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRT 773 (1088)
T ss_pred HHHHhH-------hHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhccc
Confidence 222211 12233477789999999999999999999999998888888888766 67788888888888877
Q ss_pred CCcch--HHHHHHHHhhcCCcc-hHHHHHHHHHhC
Q 040643 797 EDSAT--YVLLSNIYAAAGKWD-CRDQIRQIMKDR 828 (968)
Q Consensus 797 ~~~~~--~~~l~~~y~~~g~~~-~a~~~~~~m~~~ 828 (968)
..+.+ |+.=--..+.+++.. .|.+.....+++
T Consensus 774 ~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq 808 (1088)
T KOG4318|consen 774 LFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQ 808 (1088)
T ss_pred ccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHc
Confidence 65432 222212344555555 455566666665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-15 Score=179.81 Aligned_cols=182 Identities=10% Similarity=0.059 Sum_probs=131.7
Q ss_pred HhcCCHHHHHHHHhcCCCC-----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHccc
Q 040643 642 AKCGSIDDAKREFLEMPEK-----N-EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-----VTFVGVLSACSHV 710 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~~~-----d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~ 710 (968)
...|+.++|++.|+.+... + ...| +...|...|++++|+..|+++.+. .|.. .....+..++...
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhc
Confidence 3457777777777776632 1 1122 455677777777777777777652 3322 2345555667777
Q ss_pred CcHHHHHHHHHHhhhhcC----------CCCC---cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 040643 711 GLVNEGLRYFESMSTEYG----------LVPK---PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSAC 775 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~----------i~p~---~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~ 775 (968)
|.+++|..+++.+..... -.|+ ...+..++.++...|++++|++.++++ ...|+ ...|..+...+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888888877777754310 0122 223456778888999999999999987 44554 77888888889
Q ss_pred HhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 776 RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 776 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...|+.+.|+...+++++++|++...++.++.++...|+|++|..+.+.+.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988766654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-12 Score=147.34 Aligned_cols=554 Identities=15% Similarity=0.086 Sum_probs=349.1
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHhhc--ccCchHHHHHHHHHHHHhc--CCCchhHHHHHHHHhhccCChhHHHH
Q 040643 195 EREAILLFCQMHILGTVPTPYAISSALSACT--KIELFEIGEQFHGLIFKWG--FSSETFVCNALVTLYSRSGNLTSAEQ 270 (968)
Q Consensus 195 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~ 270 (968)
.+.|...|....+.. ++| ....+.+||. ..+++..+..++..++... ..+|+.+... ..+.++|+.+.|..
T Consensus 146 ~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHH
Confidence 588888888877642 233 3444556655 4578999999999866653 4667655433 56678899999999
Q ss_pred HHhhCCCCCcccHHHHHHHHH---c---CCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040643 271 IFSKMQQRDGVTYNSLISGLA---Q---CGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKV 344 (968)
Q Consensus 271 ~f~~m~~~~~~~~~~li~~~~---~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 344 (968)
.|.+..+-|...-++++.-.. . ...+..++.++...-... .-|+...+.|-+-+...|++..+..+...++..
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 998887766655555443211 1 122334444443332211 234455566666666677777777776666655
Q ss_pred CCCCC--hhhHhHHHHHHHhcCChhHHHHHHhhCCCC---C-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 040643 345 GISKD--IIVEGSMLDLYVKCSDVETAYKFFLTTETE---N-VVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYT 418 (968)
Q Consensus 345 g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 418 (968)
..... ...+--+..+|-..|+++.|...|-+.... + +..+--+...|.+.|+++.+...|+...+. .||.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~-- 375 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNN-- 375 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccch--
Confidence 42111 123445566666667777776666554321 1 233444556666666666666666665543 2222
Q ss_pred hhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcC----ChhHHHHHHHHHHhcCCCCC
Q 040643 419 YPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHG----MFGEALELFEEMENQGIQSD 494 (968)
Q Consensus 419 ~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd 494 (968)
..+...|...|...+ ..+.|..++.+..+.- +-|
T Consensus 376 -----------------------------------------~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d 413 (1018)
T KOG2002|consen 376 -----------------------------------------YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVD 413 (1018)
T ss_pred -----------------------------------------HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-ccc
Confidence 222233333333332 2234444444433321 223
Q ss_pred hhhHHHHHHHhhcccchhhhhhhh----HhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCC-------Ccc-
Q 040643 495 NIGFSSAISACAGIQALNQGRQIH----AQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAK-------DNI- 562 (968)
Q Consensus 495 ~~t~~~ll~a~~~~~~~~~a~~i~----~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-------d~~- 562 (968)
...|..+-..+.....+. ....+ ..+...+-.+.+.+.|.+...+...|++++|...|++...+ |.-
T Consensus 414 ~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 333333333332222111 12222 23344555577888899999999999999999999865432 221
Q ss_pred -----cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHh-hhhhHHHHHHHHHHHHHhCCCCChhHHhH
Q 040643 563 -----SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAA-NLANIKQGKQVHAMIIKTGYDSETEASNS 636 (968)
Q Consensus 563 -----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 636 (968)
+--.+...+-..++++.|.+.++...+. .|+-++-..=+.+.+ ..+.+.++...+..+.... ..++.+++-
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 1122444555667899999999998876 454433222221122 2345667777776666532 456667777
Q ss_pred HhhHHHhcCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCC-ChH
Q 040643 637 LITLYAKCGSIDDAKREFLEMP-----EKNEVSWNAMITGFSQ------------HGYALEAINLFEKMKKHDVMP-NHV 698 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~P-d~~ 698 (968)
+.+.|.+...+.-|.+-|+.+. .+|..+.-+|.+.|.+ .+..++|+++|.+.++ ..| |..
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~y 647 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMY 647 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhh
Confidence 8888988888888888665543 3466666566654442 2457889999999998 566 566
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--C--CCCCHHHHHHHHHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--P--IEPDAMVWRTLLSA 774 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~--~~p~~~~~~~ll~~ 774 (968)
.=+++.-.+++.|.+.+|..+|.+.++... -....|-.+..+|...|++-.|.++++.. . -+.+..+..-|..+
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 788888899999999999999999977532 34566888999999999999999999875 2 23458888889999
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
....|.+..+..++.++..+.|.|+..-..++-+
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 9999999999999999999999999876666544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-14 Score=166.07 Aligned_cols=269 Identities=13% Similarity=0.081 Sum_probs=202.8
Q ss_pred cCCHHHHHHHHHhCCCC------CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHH
Q 040643 543 CGRIQEAYLVFNKIDAK------DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a 615 (968)
.+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .|+. .++..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 35677777777765432 3446777777888888888888888887654 4553 3566666677788888888
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHD 692 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 692 (968)
...+..+++.. +.+..++..+...|...|++++|...|++.. .| +...|..+...+.+.|+.++|+..|++.++
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 88888887753 4457788889999999999999999999876 33 567888899999999999999999999988
Q ss_pred CCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc--chH------HHHHHHHhhcCChHHHHHHHHhC-CCC
Q 040643 693 VMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP--EHY------ACVVDLLGRAGCLSRAREFTEQM-PIE 762 (968)
Q Consensus 693 ~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~--~~y------~~lv~~l~r~G~~~eA~~~~~~m-~~~ 762 (968)
..|+ ...+..+..++...|++++|.+.|+.... +.|+. .++ ......+...|++++|.+++++. .+.
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6776 56788888899999999999999998653 34431 111 11222344579999999999985 667
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 763 PD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 763 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
|+ ...|..+...+...|+++.|...+++++++.+.....+ .+..|.++.+++...++
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 76 55788888889999999999999999999988654422 22345567777665554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-14 Score=169.64 Aligned_cols=328 Identities=8% Similarity=-0.007 Sum_probs=261.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
...++..+.+.|++++|+.+++........+.. .+..+..++...|+++.|.+.+..+++..+. +...+..+...|..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 445677888899999999999998876433333 3344445666789999999999999887654 45677888999999
Q ss_pred cCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHH
Q 040643 543 CGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVH 619 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 619 (968)
.|+.++|...|++... .+...|..+...+.+.|++++|...++.+.... |+.......+..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988754 356688899999999999999999999887653 44333332334577889999999999
Q ss_pred HHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 040643 620 AMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALE----AINLFEKMKKHD 692 (968)
Q Consensus 620 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g 692 (968)
..+++....++......+...+.+.|+.++|.+.|+++. ..+...+..+...|...|+.++ |+..|++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-- 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-- 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence 888775433344455556778889999999999999876 3467788999999999999886 8999999998
Q ss_pred CCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 040643 693 VMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWR 769 (968)
Q Consensus 693 ~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~ 769 (968)
+.|+. ..+..+...+...|++++|..+++.... +.|+ ...+..+..+|.+.|++++|.+.++++ ...|+...|.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 77874 4788888999999999999999998865 3566 556777889999999999999999987 4677754544
Q ss_pred H-HHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 770 T-LLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 770 ~-ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
. +..++...|+.+.|...++++++.+|++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4 44568899999999999999999999875
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-14 Score=143.36 Aligned_cols=341 Identities=14% Similarity=0.159 Sum_probs=248.8
Q ss_pred ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhc--ccCchHHH-HHHHHHHHHhcCCCchhHHHHHH
Q 040643 180 VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACT--KIELFEIG-EQFHGLIFKWGFSSETFVCNALV 256 (968)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~Li 256 (968)
++=|.|+. ...+|...++.-+|++|+..|+..++..-..+++.-+ .....--+ ++.|-.|.+.|-. +..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 34555554 4467899999999999999999888776666655422 22222222 2333334444422 22222
Q ss_pred HHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHH
Q 040643 257 TLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQ 336 (968)
Q Consensus 257 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 336 (968)
|.|.+.+ ++-+...+...++..||.|+|+-...+.|.+++.+-.....+.+..+|+.+|.+.+- ..++.
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHH
Confidence 3455444 444444466779999999999999999999999999998899999999999987653 34589
Q ss_pred HHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhh----C----CCCCcchHHHHHHHHHhcCCHHH-HHHHHHHH
Q 040643 337 LHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLT----T----ETENVVLWNVMLVAYGQLNDLSE-SFQIFKQM 407 (968)
Q Consensus 337 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~----~----~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m 407 (968)
+..+|+...+.||.+++|+++.+.++.|+++.|++.+-+ | .+|...+|..+|..+.+.++..+ |..++.++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 999999999999999999999999999999988877644 3 26888999999999999888643 45555554
Q ss_pred Hh----cCCCC----CccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCC--CCCceeHHHHHHHHHhcCChh
Q 040643 408 QT----EGLTP----NQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLP--EDDVVSWTAMIVGFVQHGMFG 477 (968)
Q Consensus 408 ~~----~g~~p----~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 477 (968)
+. +.++| |...|.+.+..|.+..+.+.|.+++..+..-+. .+.+. ....+.|..+....++....+
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N----~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN----WKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc----hhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33444 344577788889999999999988876611110 11111 112345677888899999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHH
Q 040643 478 EALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYA 541 (968)
Q Consensus 478 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 541 (968)
.-+.+|+.|.-+-.-|+..+...+++|....+.++...+++..++..|......+..-++...+
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 9999999999998999999999999999999999999999999988876554444443433333
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.2e-13 Score=146.19 Aligned_cols=711 Identities=13% Similarity=0.029 Sum_probs=396.2
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCCCCccchHH
Q 040643 2 EERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFSWNK 81 (968)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 81 (968)
.+.|+.|+.+||.++|..|+.-|+.+-|. +|.-|.-.........++.++......++.+.|. +|...+|+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~ 88 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTN 88 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHH
Confidence 45688888888888888888888887777 8887776666667777888888888777777764 677789999
Q ss_pred HHHHHHhcCChhh---HHHHHHHhH----hCCCCCCcccHHHHHHHhhcCCCccc-----hhhhHHHHHHHHhCCCCCcc
Q 040643 82 LISGFVAKKLSGR---VLGLFLQMI----DDDVIPNEATFVGVLRACIGSGNVAV-----QCVNQIHGLIISHGFGGSPL 149 (968)
Q Consensus 82 li~~~~~~g~~~~---a~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~-----~~~~~i~~~~~~~g~~~~~~ 149 (968)
+..+|...|+... ..+.+.... ..|+......|...+.+|-..-.-.+ ...+.+++..++.+..-.++
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999998654 333222221 23333333344444444432211000 02345566666666333333
Q ss_pred chhHHHHH-HHhcC-CchHHHHHHhh---C-CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHh
Q 040643 150 ISNPLIDL-YAKNG-FIDSAKKVFNN---L-CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSA 223 (968)
Q Consensus 150 ~~~~li~~-y~~~g-~~~~A~~~f~~---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 223 (968)
.++.-... +..+- .....+++.+. . ..++..++.+++.+-..+|+.+.|..++.+|.+.|++.++.-|-.+|-+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 33222111 22221 12222333222 2 2478889999999999999999999999999999999999988888766
Q ss_pred hcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHH
Q 040643 224 CTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELF 303 (968)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 303 (968)
.++...+..+..-|...|+.|+..++.--+-...+.|....+... .++...+++-+..-+-.| ..|.+.+
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg--~~a~k~l 318 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG--LLANKRL 318 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--cHhHHHH
Confidence 777888888899999999999999998877777665553322221 122222222222222222 2222222
Q ss_pred ------------HHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHH
Q 040643 304 ------------EKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYK 371 (968)
Q Consensus 304 ------------~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 371 (968)
.+..-.|+.-....|.... -....|.-+...++-+.+.. |.....+.-++.| ...+++
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~n----pt~r~s~~~V~a~-----~~~lrq 388 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLN----PTLRDSGQNVDAF-----GALLRQ 388 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcC----CccccCcchHHHH-----HHHHHH
Confidence 2211223222222222111 11223444444444444332 1111111122222 123455
Q ss_pred HHhhCCCCCcc-hHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHH
Q 040643 372 FFLTTETENVV-LWNVMLVAYGQ---LNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNT 447 (968)
Q Consensus 372 ~f~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 447 (968)
.|.+...+... .++ .-.+... .....+..++.... .||..- ..+.. +..
T Consensus 389 yFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~l-----rkns~l-r~lv~--------------------Lss 441 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENL-----RKNSFL-RQLVG--------------------LSS 441 (1088)
T ss_pred HHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHh-----CcchHH-HHHhh--------------------hhH
Confidence 56555544332 222 2222222 22223333333322 222110 00000 000
Q ss_pred HHHHHhhCC------CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhh
Q 040643 448 AQEILRRLP------EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQS 521 (968)
Q Consensus 448 a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 521 (968)
+ ++.+... .+-...-+.++..++..-+..+++..-+.....- -| ..|..+|+-|.....++.|..+.++.
T Consensus 442 ~-Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~ 517 (1088)
T KOG4318|consen 442 T-ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEI 517 (1088)
T ss_pred H-HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhh
Confidence 0 0000000 0001123445566666656666654444433321 11 55788888888888888888888877
Q ss_pred hhh--cCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCC----C--cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 522 YIS--GFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAK----D--NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 522 ~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~----d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
... .+..|...+..+.+...+.+...++.+++.++.+. + ..+.--|..+-+..|+.+.-.++++-+...|+.
T Consensus 518 d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 518 DTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred cccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 553 34567777889999999999999999999988753 1 123444667778889988888888887776654
Q ss_pred CCcch-------------HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHH---hHHhhHHHhcCCHHHHHHHHhcC
Q 040643 594 ANLYT-------------FGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEAS---NSLITLYAKCGSIDDAKREFLEM 657 (968)
Q Consensus 594 p~~~t-------------~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~y~k~g~~~~A~~~f~~~ 657 (968)
-+-.. .-.-...|-+..-.....+.+..++..+-..++... ..=+.+|.|+|+..+|.++.+.-
T Consensus 598 etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etp 677 (1088)
T KOG4318|consen 598 ETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETP 677 (1088)
T ss_pred hcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccC
Confidence 32110 001111222233333344444444443322222211 12234689999999998887642
Q ss_pred C-----CCC--------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcc---
Q 040643 658 P-----EKN--------------------EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH--- 709 (968)
Q Consensus 658 ~-----~~d--------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~--- 709 (968)
- .+| ..-..-++..|...|+.+.|..++.+|. +.|+..+...|.+.+..
T Consensus 678 G~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~ 754 (1088)
T KOG4318|consen 678 GVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNE 754 (1088)
T ss_pred cccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhch
Confidence 1 111 1112337889999999999999999998 78888877766666554
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCCcchHHH-HHHHHhhcCChHHHHHHHHhCC--CCC-CHHHHHHHHHH
Q 040643 710 VGLVNEGLRYFESMSTEYGLVPKPEHYAC-VVDLLGRAGCLSRAREFTEQMP--IEP-DAMVWRTLLSA 774 (968)
Q Consensus 710 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~-lv~~l~r~G~~~eA~~~~~~m~--~~p-~~~~~~~ll~~ 774 (968)
.-++-+++..-+...+.+..-|..++|.. -+-...+..+.+-|.+.+.+.. ..| ++..+..++..
T Consensus 755 evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~ 823 (1088)
T KOG4318|consen 755 EVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKC 823 (1088)
T ss_pred hccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence 33566666666666555555666555432 2233444555557788887762 222 34444444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.4e-14 Score=166.78 Aligned_cols=324 Identities=11% Similarity=-0.018 Sum_probs=262.9
Q ss_pred hhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHH
Q 040643 495 NIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGF 571 (968)
Q Consensus 495 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 571 (968)
......++..+...|+++.+..++..++.....+....++ ++......|+.++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667778889999999999999998887776544444 55666779999999999998864 3556788899999
Q ss_pred HhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHH
Q 040643 572 AQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDA 650 (968)
Q Consensus 572 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 650 (968)
.+.|++++|+..|++.... .|+. ..+..+..++...|+.++|...+..+...... +...+..+. .+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHH
Confidence 9999999999999999865 5554 45667778889999999999999887765432 233333333 47889999999
Q ss_pred HHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHH----HHHHHH
Q 040643 651 KREFLEMPEK----NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNE----GLRYFE 721 (968)
Q Consensus 651 ~~~f~~~~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~----a~~~~~ 721 (968)
..+++.+.+. +...+..+...+...|+.++|+..|+++.+ ..|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999986532 334455567788999999999999999998 5676 4567788889999999986 799999
Q ss_pred HhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 722 SMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 722 ~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
...+ +.|+ ...+..++.+|.+.|++++|...+++. ...|+ ..++..|..++...|+++.|...++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8754 4666 678889999999999999999999987 56666 6677778888999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 799 SATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 799 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
+..+..++.+|...|++++|....+...+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888899999999999999986665443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-12 Score=153.29 Aligned_cols=407 Identities=10% Similarity=0.069 Sum_probs=231.9
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCCCCcch-HHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCc
Q 040643 355 SMLDLYVKCSDVETAYKFFLTTETENVVL-WNVM--LVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGA 431 (968)
Q Consensus 355 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~l--i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 431 (968)
.++..+...|+.++|+..+++...|+... +..+ ...|...|++++|+++|+++.+.. |+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~---------------- 134 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PT---------------- 134 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC----------------
Confidence 66666666677777777777766553332 2222 335666677777777777776542 21
Q ss_pred hhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch
Q 040643 432 LSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQAL 511 (968)
Q Consensus 432 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 511 (968)
|...+..++..+.+.++.++|++.++++... .|+...+..++......++.
T Consensus 135 ---------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 135 ---------------------------NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred ---------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 2223334445555555666666666555443 33333332222222223333
Q ss_pred hhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCC-CcccHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 040643 512 NQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAK-DNISWNGLISGFAQSGYCEGALQVFSQMTQV 590 (968)
Q Consensus 512 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 590 (968)
..+.+.+..+++..+ .+...+..++....+.|-...|.++..+-+.- +...+.-+ . .+.|-+ +.+.
T Consensus 186 ~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~----~vr~ 252 (822)
T PRK14574 186 YDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAE----QVRM 252 (822)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHH----HHhh
Confidence 335555555554432 24445555666666677666666666554321 00000000 0 011111 1111
Q ss_pred CCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH-hCC-CCChh-HHhHHhh---HHHhcCCHHHHHHHHhcCCCCC---
Q 040643 591 GVQANLYTFGSVVSAAANLANIKQGKQVHAMIIK-TGY-DSETE-ASNSLIT---LYAKCGSIDDAKREFLEMPEKN--- 661 (968)
Q Consensus 591 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~-~~~~~-~~~~li~---~y~k~g~~~~A~~~f~~~~~~d--- 661 (968)
+..|+..- -.+-.-++.+..-.+.+.. .+- ++... ...+.+| ++.+.|+..++++.|+.+..+.
T Consensus 253 a~~~~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~ 325 (822)
T PRK14574 253 AVLPTRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM 325 (822)
T ss_pred cccccccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC
Confidence 11111000 0000112333333333332 111 11111 1233333 4557778888888888877221
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcC-------
Q 040643 662 -EVSWNAMITGFSQHGYALEAINLFEKMKKHD----VMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYG------- 728 (968)
Q Consensus 662 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------- 728 (968)
..+--+...+|...+++++|+.+|++..... ..|+ ......|..|+..++.+++|..+++.+.+.-.
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 2344567778888888888888888876532 1122 22356778888888888888888888865211
Q ss_pred ---CCCC---cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 729 ---LVPK---PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 729 ---i~p~---~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
-.|+ .+.+..++..+...|++.+|++.++++ ...| |..++..+....+..|+...|+...+.+..++|++..
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 0122 333455677788899999999998888 3444 4777888888889999999999999998899999999
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 801 TYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.++.++..+-..|+|++|.++.+...+.
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999998876555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-12 Score=158.55 Aligned_cols=398 Identities=10% Similarity=0.039 Sum_probs=199.8
Q ss_pred HhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC--C-CcccHHHHHHHHHcCCChhH
Q 040643 222 SACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ--R-DGVTYNSLISGLAQCGYSDK 298 (968)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~ 298 (968)
......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... | +...+..+...+...|++++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33344444444444444443311 22333455555566666666666666665321 2 33445556666666666666
Q ss_pred HHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC
Q 040643 299 ALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET 378 (968)
Q Consensus 299 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 378 (968)
|+..+++.... .|+...+..+..++...|+.+.|...+..+++.. +.+..+...+...+.+.|..+.|.+.++....
T Consensus 102 A~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 66666666544 2332225555555566666666666666666654 33444555566777777778888887776664
Q ss_pred CCcc--------hHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCCCCccchhhhhhhhccCCchhhhHHHHHh
Q 040643 379 ENVV--------LWNVMLVAYG-----QLNDL---SESFQIFKQMQTE-GLTPNQYTYPTILRTCTSLGALSLGEQIHTQ 441 (968)
Q Consensus 379 ~~~~--------~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 441 (968)
+.. ....++.... ..+++ ++|++.++.+.+. ...|+... ...
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~~~------------------ 237 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--DYQ------------------ 237 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--HHH------------------
Confidence 211 1111111111 11223 5566666666543 12221110 000
Q ss_pred hCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CChhhHHHHHHHhhcccchhhhhhhhHh
Q 040643 442 LGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQ-SDNIGFSSAISACAGIQALNQGRQIHAQ 520 (968)
Q Consensus 442 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 520 (968)
......+..+...|++++|+..|+++.+.+.. |+..-
T Consensus 238 -------------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~----------------------- 275 (765)
T PRK10049 238 -------------------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ----------------------- 275 (765)
T ss_pred -------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-----------------------
Confidence 01111133445668899999999998876421 32111
Q ss_pred hhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCc-------ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 521 SYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDN-------ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 521 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
-.+...|...|++++|...|+++...+. ..+..+..++.+.|++++|+++++++....
T Consensus 276 -------------~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-- 340 (765)
T PRK10049 276 -------------RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS-- 340 (765)
T ss_pred -------------HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC--
Confidence 1134456666666666666665533221 224445556777777788877777776542
Q ss_pred CCcc-hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC---hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHH
Q 040643 594 ANLY-TFGSVVSAAANLANIKQGKQVHAMIIKTGYDSE---TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWN 666 (968)
Q Consensus 594 p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~ 666 (968)
|... .+.... -.|+ ......+..++...|++++|+++|+++. ..+...|.
T Consensus 341 P~~~~~~~~~~-----------------------~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 341 PPFLRLYGSPT-----------------------SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred CceEeecCCCC-----------------------CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2111 111000 0111 1122333444445555555555555543 22344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhh
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
.+...+...|++++|++.+++.++ +.||.. .+..........|++++|...++.+.+.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555555555555555555555 445432 3334444555555555555555555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-12 Score=129.74 Aligned_cols=332 Identities=18% Similarity=0.193 Sum_probs=233.3
Q ss_pred cchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhh--cCCCccchhhh-HHHHHHHHhCCCCCccchhH
Q 040643 77 FSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACI--GSGNVAVQCVN-QIHGLIISHGFGGSPLISNP 153 (968)
Q Consensus 77 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~~~~~-~i~~~~~~~g~~~~~~~~~~ 153 (968)
.+=|.++. ...+|..+++.-+|+.|+..|+..++..-..+++.-+ .+.+.. .++ +-+-.+.+.|- .+..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~--~~E~~~Fv~~~~~~E-~S~~sW-- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVP--FAEWEEFVGMRNFGE-DSTSSW-- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCc--chhHHHHhhcccccc-cccccc--
Confidence 35566665 4558899999999999999998877766666655332 333333 221 12222223332 222222
Q ss_pred HHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHH
Q 040643 154 LIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIG 233 (968)
Q Consensus 154 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 233 (968)
|.|.+.+ -+|+..| +...++.+||.|+++-...+.|.++|.+-.....+.+..+||.+|.+-+- ..+
T Consensus 191 ------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 4555544 5555555 45578999999999999999999999999999899999999999988653 345
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHh----hCC----CCCcccHHHHHHHHHcCCChhH-HHHHHH
Q 040643 234 EQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFS----KMQ----QRDGVTYNSLISGLAQCGYSDK-ALELFE 304 (968)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~ 304 (968)
+.+..+|+...+.||.+++|+++...++.|+++.|++.+- +|+ +|...+|..+|.-+++.+++.+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 8999999999999999999999999999999988876654 443 5888899999999999988854 444444
Q ss_pred Hhhc----cccCC----CcccHHHHHHHHhccCChHHHHHHHHHHHHhC----CCCC---hhhHhHHHHHHHhcCChhHH
Q 040643 305 KMQL----DCLKP----DCVTVASLVSACASVGAFRTGEQLHSYAIKVG----ISKD---IIVEGSMLDLYVKCSDVETA 369 (968)
Q Consensus 305 ~m~~----~g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~Li~~y~~~g~~~~A 369 (968)
+... ..++| |...|.+.+..|.+..+.+.|.++++....-. +.++ .+-|..+....+....++.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 22333 33458899999999999999999998664321 2232 24556677777777778877
Q ss_pred HHHHhhCCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhc
Q 040643 370 YKFFLTTET----ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCT 427 (968)
Q Consensus 370 ~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 427 (968)
...++.|.. |+..+-..++.+..-+|.++-.-+++.+|+..|..-+.....-++..++
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 777777653 4555566677777777777777777777777665444443333333333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7e-11 Score=139.83 Aligned_cols=425 Identities=10% Similarity=0.081 Sum_probs=209.3
Q ss_pred hccCChhHHHHHHhhCCCCCcc---cHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHH---HHHHhccCChHH
Q 040643 260 SRSGNLTSAEQIFSKMQQRDGV---TYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASL---VSACASVGAFRT 333 (968)
Q Consensus 260 ~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~ 333 (968)
.+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555555432221 12255555555555555555555554 2322222211 223444455556
Q ss_pred HHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHh--cCCHHHHHHHHHHHHhcC
Q 040643 334 GEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQ--LNDLSESFQIFKQMQTEG 411 (968)
Q Consensus 334 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g 411 (968)
|.++++.+++.. +.+..++..++..|...++.++|.+.++++...+......+..+|.. .++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 666665555554 22344455666666666777777777766654433222223333333 344444777777776653
Q ss_pred CCCC-ccchhhhhhhhccCCchhhhHHHHHhhCCh-----------HHHHHHHhhCCCCCceeHHHHHHHHHhcCC---h
Q 040643 412 LTPN-QYTYPTILRTCTSLGALSLGEQIHTQLGNL-----------NTAQEILRRLPEDDVVSWTAMIVGFVQHGM---F 476 (968)
Q Consensus 412 ~~p~-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~-----------~~a~~~~~~~~~~~~~~~~~li~~~~~~g~---~ 476 (968)
|+ ...+..+..++.+.|-...+.++.....++ +.+.+..+....++. ...++ .
T Consensus 200 --P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~----------~~~~r~~~~ 267 (822)
T PRK14574 200 --PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR----------SETERFDIA 267 (822)
T ss_pred --CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc----------cchhhHHHH
Confidence 43 333444555555555544444443322110 001111100000000 00111 2
Q ss_pred hHHHHHHHHHHhc-CCCCCh-hhH----HHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHH
Q 040643 477 GEALELFEEMENQ-GIQSDN-IGF----SSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAY 550 (968)
Q Consensus 477 ~~A~~l~~~m~~~-g~~pd~-~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 550 (968)
+.|+.-++.+... +-.|.. .-| .--+-+....++...+.+.+..+...+.+....+.-++.++|...++.++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 3445555554431 111221 111 1223344555555555555655555555444455556666666666666666
Q ss_pred HHHHhCCCC---------CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhhhHHHHHHHHH
Q 040643 551 LVFNKIDAK---------DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLANIKQGKQVHA 620 (968)
Q Consensus 551 ~~f~~m~~~---------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~ 620 (968)
.++.++... +......|.-+|..++++++|..+++++.+. .|..+. |..- .
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~~----~------------- 408 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGLP----G------------- 408 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCCC----C-------------
Confidence 666654221 1111344556666666666666666666542 221000 0000 0
Q ss_pred HHHHhCCCCC-hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040643 621 MIIKTGYDSE-TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696 (968)
Q Consensus 621 ~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 696 (968)
....|| ......++..+...|++.+|++.++++. .-|...+..+...+...|.+.+|.+.++.... +.|+
T Consensus 409 ----~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~ 482 (822)
T PRK14574 409 ----KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPR 482 (822)
T ss_pred ----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCc
Confidence 000111 1223344555667777777777777765 23666777777777777777777777766555 5665
Q ss_pred h-HHHHHHHHHHcccCcHHHHHHHHHHhhhh
Q 040643 697 H-VTFVGVLSACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 697 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
. .+......+....|++++|....+.....
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 4 35666666666777777777777666544
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-07 Score=102.57 Aligned_cols=369 Identities=9% Similarity=0.083 Sum_probs=279.1
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHH
Q 040643 461 VSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLY 540 (968)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 540 (968)
.+|+.-...|.+.+.++-|..+|...++- .+-+...|..+...--..|..+....++..++..-.. ....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHH
Confidence 47777788888888888888888777663 2224444555555545556666666666666665443 334455555566
Q ss_pred HHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHH
Q 040643 541 ARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQ 617 (968)
Q Consensus 541 ~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 617 (968)
-+.|++..|+.++++.-+. +...|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---++..++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 6789999999888776543 445688888888899999999999998876 46676666655555566788999999
Q ss_pred HHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040643 618 VHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVM 694 (968)
Q Consensus 618 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 694 (968)
+++..++. ++.-...|-.+...|-..++++.|.+.|..-.. | .+..|-.+...--+.|..-+|..+|++.+.. .
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--N 749 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--N 749 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--C
Confidence 99888775 455567888888999999999999999887653 3 4568888888888899999999999998873 5
Q ss_pred C-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 040643 695 P-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLS 773 (968)
Q Consensus 695 P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~ 773 (968)
| |...|...+..=.+.|..++|.....+..++ .+-+...|+--|.+..|.++-..+.+-+++..-.| .+.-+...
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp--hVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP--HVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccCCc--hhHHHHHH
Confidence 6 4668899999999999999999988877665 23346678888888889888887777777764444 44455566
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEc
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVK 842 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~ 842 (968)
.+.....++.|..-++++++.+|++..++..+-..+...|.-++-.+|+++-.... ..-|-.|+-+.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHh
Confidence 67777889999999999999999999999999999999999999999988765432 23477777543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-09 Score=123.01 Aligned_cols=148 Identities=21% Similarity=0.236 Sum_probs=107.8
Q ss_pred HhhccCChhHHHHHHhhCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCc-ccHHHHHHHHhccCChHH
Q 040643 258 LYSRSGNLTSAEQIFSKMQQ---RDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDC-VTVASLVSACASVGAFRT 333 (968)
Q Consensus 258 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 333 (968)
.+++ |++++|.+++.++.. ++...|.+|-..|-+.|+.++++..+-. .....|.. .-|..+-.-....|.+.+
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll--AAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL--AAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH--HHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3444 999999999998864 3567899999999999999999877643 34445554 446666666678889999
Q ss_pred HHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCc--------chHHHHHHHHHhcCCHHHHHHHHH
Q 040643 334 GEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENV--------VLWNVMLVAYGQLNDLSESFQIFK 405 (968)
Q Consensus 334 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~ 405 (968)
|.-.+..+++.. +++....---..+|-+.|+...|..-|.++...+. ..--.+++.|...++.+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999886 45555555667889999999999888877654322 122234566667777777877777
Q ss_pred HHHh
Q 040643 406 QMQT 409 (968)
Q Consensus 406 ~m~~ 409 (968)
....
T Consensus 305 ~~~s 308 (895)
T KOG2076|consen 305 GALS 308 (895)
T ss_pred HHHh
Confidence 6654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-08 Score=110.01 Aligned_cols=460 Identities=13% Similarity=0.098 Sum_probs=287.1
Q ss_pred HHhhccCChhHHHHHHhhCCC---CCcccHHHHHHHHHcCCChhHHHHHHHH----hhccccCCCcccHHHHHHHHhccC
Q 040643 257 TLYSRSGNLTSAEQIFSKMQQ---RDGVTYNSLISGLAQCGYSDKALELFEK----MQLDCLKPDCVTVASLVSACASVG 329 (968)
Q Consensus 257 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~ 329 (968)
-+|++...++.|..+++...+ .+...|-+-..---++|+.+....+..+ +...|+..|...|..=..+|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344444555566666555442 2445565555544556665555555443 234455666555555555565556
Q ss_pred ChHHHHHHHHHHHHhCCCCC--hhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHH
Q 040643 330 AFRTGEQLHSYAIKVGISKD--IIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIF 404 (968)
Q Consensus 330 ~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 404 (968)
..-.+..+...++..|++.. ..+++.-.+.+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 65555555555555554332 23444444444444444444444433221 12223333332222233333333333
Q ss_pred HHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHH
Q 040643 405 KQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFE 484 (968)
Q Consensus 405 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 484 (968)
++.... .+...+.|-.....+-..|+...|..++.
T Consensus 574 qkav~~---------------------------------------------~pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 574 QKAVEQ---------------------------------------------CPKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred HHHHHh---------------------------------------------CCcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 222211 01223344444444444555555555555
Q ss_pred HHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC--CCcc
Q 040643 485 EMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA--KDNI 562 (968)
Q Consensus 485 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~ 562 (968)
+.. ..... +..+|-+-+..-.....++.|+.+|.+... +...
T Consensus 609 ~af-----------------------------------~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 609 QAF-----------------------------------EANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred HHH-----------------------------------HhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 444 43332 445566666666677777777777766543 2334
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc-hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHH
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY-TFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLY 641 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 641 (968)
.|.--+..---.+..++|++++++..+. -|+-. .|..+-..+-+.++++.|+..+..=.+. .+..+..|-.|.+.=
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 4554444445567788888888776654 45544 3444445566777777777776554442 355678899999999
Q ss_pred HhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHH
Q 040643 642 AKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLR 718 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 718 (968)
-+.|++-.|+.+|++.. .+|...|-..|..-.++|+.++|..+..+.++. ++-+...|.--+...-+.+.-.....
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHH
Confidence 99999999999999876 347889999999999999999999999988873 33345667777776677776555555
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 040643 719 YFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 719 ~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
.+++. +-++...-.+..++....++++|.+.|++. ...|| ..+|--+......||+-+.-+.+..+...-+|
T Consensus 809 ALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 809 ALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 55433 344555667778889999999999999887 67787 78999999999999999999999999999999
Q ss_pred CCcchHHHHHH
Q 040643 797 EDSATYVLLSN 807 (968)
Q Consensus 797 ~~~~~~~~l~~ 807 (968)
.....+...|.
T Consensus 883 ~hG~~W~avSK 893 (913)
T KOG0495|consen 883 THGELWQAVSK 893 (913)
T ss_pred CCCcHHHHHhh
Confidence 98887766653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-10 Score=117.09 Aligned_cols=477 Identities=14% Similarity=0.125 Sum_probs=306.7
Q ss_pred HHHHHHcCCChhHHHHHHHHhhccccCCCcccH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhhHhHHHHHH
Q 040643 286 LISGLAQCGYSDKALELFEKMQLDCLKPDCVTV-ASLVSACASVGAFRTGEQLHSYAIKVGISKD----IIVEGSMLDLY 360 (968)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y 360 (968)
|.+-|..+....+|+..++-+.+...-||.-.. ..+-..+.+...+..|.+.+...+..-...+ +.+.+.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 445677777888999999988888777776543 2233345566677888888877765532222 23445555567
Q ss_pred HhcCChhHHHHHHhhCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHH
Q 040643 361 VKCSDVETAYKFFLTTET--ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQI 438 (968)
Q Consensus 361 ~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 438 (968)
.+.|++++|..-|+.+.+ ||..+--.++-++.--|+.++..+.|.+|..-...||..-|..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~----------------- 349 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK----------------- 349 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-----------------
Confidence 788999999999988653 5665544455556667888999999999988776666654421
Q ss_pred HHhhCChHHHHHHHhhCCCCCceeHHH-----HHHHHHhcC--ChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch
Q 040643 439 HTQLGNLNTAQEILRRLPEDDVVSWTA-----MIVGFVQHG--MFGEALELFEEMENQGIQSDNIGFSSAISACAGIQAL 511 (968)
Q Consensus 439 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 511 (968)
.-..|+....|- ++.-+-+.. +.++++-.--+++.--+.||-.. -.
T Consensus 350 ---------------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~ 402 (840)
T KOG2003|consen 350 ---------------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GC 402 (840)
T ss_pred ---------------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------cc
Confidence 001122222211 111111111 12222222222332223333110 00
Q ss_pred hhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHH----H-HHHHHhcC-ChhhHHHHHH
Q 040643 512 NQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNG----L-ISGFAQSG-YCEGALQVFS 585 (968)
Q Consensus 512 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~----l-i~~~~~~g-~~~~A~~l~~ 585 (968)
+...+.+....-..+..+.. -.-..-|.+.|+++.|.+++.-...+|..+-++ | .--|.+-| ++..|.+.-+
T Consensus 403 dwcle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 11111111111000111111 112345789999999998888777665443322 2 22233333 4555555544
Q ss_pred HhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCH
Q 040643 586 QMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNE 662 (968)
Q Consensus 586 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~ 662 (968)
...... +-|....+.--+.....|++++|.+.+..++...-......|| +.-.|-+.|++++|.+.|-++. ..++
T Consensus 481 ~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~ 558 (840)
T KOG2003|consen 481 IALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNA 558 (840)
T ss_pred HHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhH
Confidence 433211 1111111111112234689999999998887654222223333 2335778999999999998765 5577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHH
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVV 740 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv 740 (968)
...-.+.+.|-...+..+|++++-+... +.|+ +..+.-|...|-+.|+-.+|.++.- ..|..-|. +++..-+.
T Consensus 559 evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~y---dsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHY---DSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhh---hcccccCcchHHHHHHH
Confidence 7777888999999999999999988776 6775 6677788889999999999998876 34566665 88888888
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCc
Q 040643 741 DLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSAC-RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKW 815 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 815 (968)
.-|....-.++|..++++. -+.|+.+-|..++.+| |..||++.|....+.+...-|+|....-.|..+....|.-
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 8899999999999999998 5899999999999987 6789999999999999999999999999999998888764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-13 Score=141.87 Aligned_cols=250 Identities=18% Similarity=0.193 Sum_probs=104.0
Q ss_pred HHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHH-HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHH
Q 040643 571 FAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVS-AAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDD 649 (968)
Q Consensus 571 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 649 (968)
+.+.|++++|++++++-......|+...|-.++. .+-..++.+.|.+.+..+...+- .++..+..++.. ...+++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccccccc
Confidence 3344444444444433322221233333332222 22334455555555555544332 134455566665 57778888
Q ss_pred HHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHcccCcHHHHHHHHHHhhhh
Q 040643 650 AKREFLEMP--EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDV-MPNHVTFVGVLSACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 650 A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
|.+++...- .++...|..++..+...|+.+++.+++++.....- .+|...|..+...+.+.|+.++|.+.++...+.
T Consensus 96 A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 96 ALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 887777653 34666777788888888888888888888765332 234556667777778888888888888877543
Q ss_pred cCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHH
Q 040643 727 YGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 727 ~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
.|+ ......++.++...|+.++|.++++.. ..++|+..|..+..++...|+.+.|....+++++..|+|+....
T Consensus 176 ---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~ 252 (280)
T PF13429_consen 176 ---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLL 252 (280)
T ss_dssp ----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccc
Confidence 665 666777888888888888877777665 12345668889999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHH
Q 040643 804 LLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 804 ~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.++.++...|+.++|.++|+..
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHT---------------
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999997754
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-06 Score=98.24 Aligned_cols=737 Identities=12% Similarity=0.120 Sum_probs=377.8
Q ss_pred HhhhhCCCcchHHHhhhccCC---CCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccc
Q 040643 53 NIYLTSGDLDSAMKIFDDMSK---RTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAV 129 (968)
Q Consensus 53 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 129 (968)
+.+..+|++++|-++-..-|+ +++-|-|.+-..=...|.....+..|..+...|..-...|. .+.+.-...+...
T Consensus 368 neLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGkLNk~ETL-EL~RpVL~Q~Rkq- 445 (1666)
T KOG0985|consen 368 NELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQGKLNKYETL-ELCRPVLQQGRKQ- 445 (1666)
T ss_pred HHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcccccHHHHH-HHHHHHHhhhHHH-
Confidence 334446777777777666554 34444444444444556666666666666666522111121 1111111111111
Q ss_pred hhhhHHHH-----HHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhC--------------CCCCeehHHHHHHHHH
Q 040643 130 QCVNQIHG-----LIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNL--------------CFKDSVSWVAMISGFS 190 (968)
Q Consensus 130 ~~~~~i~~-----~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--------------~~~~~~~~~~li~~~~ 190 (968)
..+.... -..+.|-...++-.+.-++.|.+.+-+..+...|.+. ..|| |-.+|+...
T Consensus 446 -LlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~ 521 (1666)
T KOG0985|consen 446 -LLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLK 521 (1666)
T ss_pred -HHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHH
Confidence 1111100 0111221111111222334444444444444444333 1233 455666665
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHH
Q 040643 191 QNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQ 270 (968)
Q Consensus 191 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 270 (968)
+ -.++++.++...|.+..- ...-++.+...+........+..+.-.+++..-+....+.+.|+.+-...+ ++-|..
T Consensus 522 r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~a-PqVADA 597 (1666)
T KOG0985|consen 522 R-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHA-PQVADA 597 (1666)
T ss_pred c-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccc-hHHHHH
Confidence 5 567777777766665321 222334444444444444444444444444332223344455554433221 222222
Q ss_pred HHh-hCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhcc---ccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 040643 271 IFS-KMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLD---CLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGI 346 (968)
Q Consensus 271 ~f~-~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 346 (968)
++- .|- .-.-|-.+.+-|.++|-...|++.+.....- -+..+...-..++ .+...-.++...+.+..|...++
T Consensus 598 ILgN~mF--tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~Ni 674 (1666)
T KOG0985|consen 598 ILGNDMF--THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANI 674 (1666)
T ss_pred HHhcccc--ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHH
Confidence 211 111 1112777777888888888888777665321 0000000011111 22223355667777777777777
Q ss_pred CCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---------------CCcchHHHHHHHHHhcCCHHHHHHHHHHH----
Q 040643 347 SKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---------------ENVVLWNVMLVAYGQLNDLSESFQIFKQM---- 407 (968)
Q Consensus 347 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m---- 407 (968)
..+..+.-.+..-|...=..+.-.++|+.... .|...--..|.+-++.|++.+..++-++-
T Consensus 675 rqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Yd 754 (1666)
T KOG0985|consen 675 RQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYD 754 (1666)
T ss_pred HhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCC
Confidence 77766666666666666556666666655432 23444456678888888888777665431
Q ss_pred --------HhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCC---------------------
Q 040643 408 --------QTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPED--------------------- 458 (968)
Q Consensus 408 --------~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------------------- 458 (968)
++.. -+|.. .++-.|-+-+-.... -++-.-+++..-.+++-+-..|
T Consensus 755 pErvKNfLkeAk-L~Dql---PLiiVCDRf~fVhdl-vlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik 829 (1666)
T KOG0985|consen 755 PERVKNFLKEAK-LTDQL---PLIIVCDRFDFVHDL-VLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIK 829 (1666)
T ss_pred HHHHHHHHHhcc-ccccC---ceEEEecccccHHHH-HHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHH
Confidence 1111 11111 111222222111110 0111113333333333322221
Q ss_pred -------CceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhh----------hhhhHhh
Q 040643 459 -------DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQG----------RQIHAQS 521 (968)
Q Consensus 459 -------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a----------~~i~~~~ 521 (968)
..+.-+-|+.-.-+.++..--+.+++...++|. -|..|++.+-..+..+++-.+. +-+-.+.
T Consensus 830 ~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYC 908 (1666)
T KOG0985|consen 830 NLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYC 908 (1666)
T ss_pred HHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhh
Confidence 111222233333344445555555666666663 4667777777777766542211 1111111
Q ss_pred hhhcCCC----------C---------chhhhhHHHHHHHcCCHHHHHHHH-----------HhC-----C-CCCcccHH
Q 040643 522 YISGFSD----------D---------LSIGNALISLYARCGRIQEAYLVF-----------NKI-----D-AKDNISWN 565 (968)
Q Consensus 522 ~~~g~~~----------~---------~~~~~~Li~~y~k~g~~~~A~~~f-----------~~m-----~-~~d~~~~~ 565 (968)
.++.+.. | -..+..+..-..+..+.+--.+++ ++. + ..|+..-+
T Consensus 909 EKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS 988 (1666)
T KOG0985|consen 909 EKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVS 988 (1666)
T ss_pred cccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHH
Confidence 1211100 0 111112222222333333322332 111 1 12445556
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHH-HH---------------------------HHHhhhhhHHHHH
Q 040643 566 GLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGS-VV---------------------------SAAANLANIKQGK 616 (968)
Q Consensus 566 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~-ll---------------------------~a~~~~~~~~~a~ 616 (968)
.-+.++...+-..+-++++++..-..-..+. ..+-. ++ ..+...+-.++|.
T Consensus 989 ~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 989 VTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAF 1068 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHH
Confidence 6678888888888888888887643211111 11111 11 1111122233333
Q ss_pred HHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040643 617 QVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696 (968)
Q Consensus 617 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 696 (968)
.++.. +..+....+-||+ .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+ .-|
T Consensus 1069 ~ifkk-----f~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adD 1132 (1666)
T KOG0985|consen 1069 AIFKK-----FDMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADD 1132 (1666)
T ss_pred HHHHH-----hcccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCC
Confidence 33322 2233333333333 446677777776666655 4699999999999999999998743 225
Q ss_pred hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040643 697 HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACR 776 (968)
Q Consensus 697 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~ 776 (968)
+..|.-++.+++++|.+++-.+|+...+++ .-+|.++ +.++-+|++.+++.|-++++. -||..-......-|.
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCF 1205 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHh
Confidence 678999999999999999999999866554 6677765 678999999999999999884 477777778888899
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEE
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWI 839 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 839 (968)
..|.++.|+.... +.+.|-.|+..+...|.+..|...-++...-.+-|+-+.+-|
T Consensus 1206 ~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred hhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 9999988877765 456788899999999999888775443333333333333333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.1e-10 Score=123.94 Aligned_cols=356 Identities=15% Similarity=0.164 Sum_probs=226.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCH
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRI 546 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 546 (968)
.+...-.|+.++|.+++.+.++. .+-....|.++-..+-..|+.+.+...+-.+...... |...|..+.+...+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccH
Confidence 33344448888888888888775 2345566777777788888777776665544444333 457778888888888888
Q ss_pred HHHHHHHHhCCCCCcccHHH---HHHHHHhcCChhhHHHHHHHhhhcCCcCCcch----HHHHHHHHhhhhhHHHHHHHH
Q 040643 547 QEAYLVFNKIDAKDNISWNG---LISGFAQSGYCEGALQVFSQMTQVGVQANLYT----FGSVVSAAANLANIKQGKQVH 619 (968)
Q Consensus 547 ~~A~~~f~~m~~~d~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~ 619 (968)
+.|+-.|.+..+.++.-|-. -+..|-+.|+...|+.-|.+|.+.....|..- .-.++..+...+.-+.|.+++
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888887766554444433 35667777888888888888776532112222 222333344444445555555
Q ss_pred HHHHH-hCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CC
Q 040643 620 AMIIK-TGYDSETEASNSLITLYAKCGSIDDAKREFLEMP----EKNEVSWNAMITGFSQHGYALEAINLFEKMKK--HD 692 (968)
Q Consensus 620 ~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g 692 (968)
..... .+-..+...++.++.+|.+...++.|......+. ++|..-|.+-= .++ .-+.-... .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNALCEVGKE 373 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----ccccccccCCCC
Confidence 44433 2223344555666666666666666655544333 23333331100 000 00000000 11
Q ss_pred CCCChHHHHHHHHHHc---ccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC---CCCCC
Q 040643 693 VMPNHVTFVGVLSACS---HVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGCLSRAREFTEQM---PIEPD 764 (968)
Q Consensus 693 ~~Pd~~t~~~ll~a~~---~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~p~ 764 (968)
+.++-.. .-+..|. ..+...+++..|- .++...|. .+.|.-++++|-+.|++++|..++..+ |..-+
T Consensus 374 ~s~~l~v--~rl~icL~~L~~~e~~e~ll~~l---~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 374 LSYDLRV--IRLMICLVHLKERELLEALLHFL---VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCccchh--HhHhhhhhcccccchHHHHHHHH---HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 2233211 1122232 2333444444333 34454444 788999999999999999999999887 33445
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEE
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWI 839 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 839 (968)
..+|--+...+...|..+.|....++++.+.|++..+-+.|+.+|...|+.++|.++...|-.-+-++.++|+|-
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 889999999999999999999999999999999999999999999999999999999888766666666777774
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.4e-09 Score=110.74 Aligned_cols=209 Identities=17% Similarity=0.177 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
|+.-.+.+-++.+++.... +...|--+..+|....+.++-.+.|+... ..|+.+|.--...+...+++++|+.=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666654322 22224555566778888888888888765 2355566666666777788999999999
Q ss_pred HHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 040643 687 KMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD 764 (968)
Q Consensus 687 ~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~ 764 (968)
+.+. +.|+. ..|.-+..+..+.+.++++...|+...+++ +-.++.|+-...+|.-.+++++|.+.++.. .++|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 78864 478888888888999999999999987763 333888999999999999999999999876 45554
Q ss_pred ---------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 765 ---------AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 765 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+.+-.+++-.- -.+|+..|+...++++++||....+|..|+.+-...|+.++|.++.+.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44545555433 448999999999999999999999999999999999999999997664
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-09 Score=111.16 Aligned_cols=273 Identities=14% Similarity=0.162 Sum_probs=138.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChh--hHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCC
Q 040643 468 VGFVQHGMFGEALELFEEMENQGIQSDNI--GFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGR 545 (968)
Q Consensus 468 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 545 (968)
.-|.++|+++.|+++++-..+..-+.-+. +-.+.|.-.....++..+.+.-...+...-- +....+.-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCc
Confidence 34678899999998888876653222111 1112222222334445555544444322110 11111111111223567
Q ss_pred HHHHHHHHHhCCCCCcccHHHH---HHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 546 IQEAYLVFNKIDAKDNISWNGL---ISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 546 ~~~A~~~f~~m~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
+++|.+.+.+....|...-.+| .-.+-..|+.++|++.|-++..- +.-+...+..+.+.|..+.+..+|.+++..+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 7777777777666554433333 22345567777777777665321 1223334444555555555666665555444
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhc-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLE-MP--EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVT 699 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~-~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t 699 (968)
... ++.|+.+.+-|.+.|-+.|+-..|.+..-. .. .-|+.+..-|..-|.....+++|+..|++..- +.|+.+-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 332 345666666666666666666666654322 22 22443333355555555566666666666555 5666666
Q ss_pred HHHHHHHHc-ccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcC
Q 040643 700 FVGVLSACS-HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAG 747 (968)
Q Consensus 700 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G 747 (968)
|..++..|. ++|.+.+|.++++...++ .+-+.+..--+|.+.+..|
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 655554443 456666666666555432 2333444444454444444
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-10 Score=124.84 Aligned_cols=221 Identities=14% Similarity=0.129 Sum_probs=118.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhC-C-CCChhHHhHHhhHHHhcCCHH-HHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040643 599 FGSVVSAAANLANIKQGKQVHAMIIKTG-Y-DSETEASNSLITLYAKCGSID-DAKREFLEMPEKNEVSWNAMITGFSQH 675 (968)
Q Consensus 599 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~y~k~g~~~-~A~~~f~~~~~~d~~~~~~li~~~~~~ 675 (968)
..-+-.+|..+++.++++.+|+.+.+.. . --+..+|++.+--+-+.=.+. -|..+.+.. .-.+.+|.++.++|..+
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhh
Confidence 3344445555555555555555554421 1 113344444332221111111 122222222 22455666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH---HHHHhhcCChHH
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV---VDLLGRAGCLSR 751 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l---v~~l~r~G~~~e 751 (968)
++.+.|++.|++.++ +.|+ ..+|+.+..-+.....+|.|..+|+.. +..+..||+++ +-.|.+.++++.
T Consensus 435 kdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred hHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcCCchhhHHHHhhhhheeccchhhH
Confidence 666666666666666 5663 456666655566666666666666643 23444555543 345566666666
Q ss_pred HHHHHHhC-CCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 752 AREFTEQM-PIEPDAMVWR-TLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 752 A~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
|+-.|+++ .+.|...+.. .+...+...|..|.|....++++.++|.|+-.-+..+.++...+++++|....+.+|+
T Consensus 508 Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 66666665 5666533333 3333355566666666666666666666666666666666666666666666666654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=124.66 Aligned_cols=273 Identities=15% Similarity=0.102 Sum_probs=207.3
Q ss_pred CHHHHHHHHHhCCCC--Ccc-cHHHHHHHHHhcCChhhHHHHHHHhhhcC-C-cCCcchHHHHHHHHhhhhhHHHHHHHH
Q 040643 545 RIQEAYLVFNKIDAK--DNI-SWNGLISGFAQSGYCEGALQVFSQMTQVG-V-QANLYTFGSVVSAAANLANIKQGKQVH 619 (968)
Q Consensus 545 ~~~~A~~~f~~m~~~--d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~~~ 619 (968)
+..+|...|..++.. |+- ....+..+|...+++++|.++|+...+.. . .-+...|+++|--.-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467788888876543 333 33446778888889999999998887642 1 11345566655432211 111111
Q ss_pred -HHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040643 620 -AMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP 695 (968)
Q Consensus 620 -~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 695 (968)
..+++. -+..+.+|-++.+.|+-.++.+.|++.|++..+ | ...+|+-+..-+.....+++|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 122222 245688999999999999999999999999874 3 567888888888999999999999999887 888
Q ss_pred ChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 040643 696 NHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTL 771 (968)
Q Consensus 696 d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~l 771 (968)
++. .|.++...|.+.+.++.|...|+... .|.|. .....++...+.+.|+.|+|+.+++++ .++|. +..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 754 89999999999999999999999764 78888 666777888999999999999999998 44443 2222223
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.......++.+.|....|.+.++-|+++..|.+|+.+|-..|+.+.|..-...|-+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 33355678899999999999999999999999999999999999999876555544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.9e-10 Score=124.83 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=71.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 040643 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLV 552 (968)
Q Consensus 473 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 552 (968)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+................+...|+.+.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777776666544321111 1222222333455666666666666665543332222222335677778888888887
Q ss_pred HHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 553 FNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 553 f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
++++.+. +......+...|.+.|++++|++++..+.+.+..
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 7766533 4556667777888888888888888888776544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-06 Score=94.76 Aligned_cols=737 Identities=12% Similarity=0.112 Sum_probs=355.3
Q ss_pred HHHHhcCCChHHHHHHHHH----------HHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCC--CCccchHHHHH
Q 040643 17 LEGCLSYGSLLEAKKIHGK----------ILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSK--RTVFSWNKLIS 84 (968)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 84 (968)
+..|.+++-+..+..+|.+ ..+.|..||-. -+++..-+ -+.+.+.++...+.. +...-++.+..
T Consensus 475 L~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~D 550 (1666)
T KOG0985|consen 475 LSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVD 550 (1666)
T ss_pred HHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHH
Confidence 4455555555555544442 23567777642 23333333 456666666655543 23344555666
Q ss_pred HHHhcCChhhHHHHHHHhHhCCCCCCcccHHH-HHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCC
Q 040643 85 GFVAKKLSGRVLGLFLQMIDDDVIPNEATFVG-VLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGF 163 (968)
Q Consensus 85 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 163 (968)
.+......+.+..++-.... +-.|+.....+ +|.-- +. .+.++-+.++.++.-.. +-+..+...+.+.|-
T Consensus 551 lFme~N~iQq~TSFLLdaLK-~~~Pd~g~LQTrLLE~N-----L~--~aPqVADAILgN~mFtH-yDra~IAqLCEKAGL 621 (1666)
T KOG0985|consen 551 LFMELNLIQQCTSFLLDALK-LNSPDEGHLQTRLLEMN-----LV--HAPQVADAILGNDMFTH-YDRAEIAQLCEKAGL 621 (1666)
T ss_pred HHHHHHhhhhhHHHHHHHhc-CCChhhhhHHHHHHHHH-----hc--cchHHHHHHHhcccccc-ccHHHHHHHHHhcch
Confidence 66666666666666555443 33444433322 22111 11 33444444443332211 226778888999999
Q ss_pred chHHHHHHhhCCC--CCeehHHHH-----HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHH
Q 040643 164 IDSAKKVFNNLCF--KDSVSWVAM-----ISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQF 236 (968)
Q Consensus 164 ~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 236 (968)
...|++.+..+.. +.++ .+.+ +-+|.-.-.++++++.++.|...+++.|..+...+..-+...-..+...++
T Consensus 622 ~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~l 700 (1666)
T KOG0985|consen 622 LQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIEL 700 (1666)
T ss_pred HHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999988887632 1111 1111 234555667899999999999988887766655554444433222222333
Q ss_pred HHHHHH-----------hcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC-------------------C-----Ccc
Q 040643 237 HGLIFK-----------WGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ-------------------R-----DGV 281 (968)
Q Consensus 237 ~~~~~~-----------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------------------~-----~~~ 281 (968)
|+.... -++..|+.+.-..|.+-++.|++.+.+++-++-.- | |..
T Consensus 701 FE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf 780 (1666)
T KOG0985|consen 701 FESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRF 780 (1666)
T ss_pred HHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEeccc
Confidence 332211 13567777888889999999999998888654320 1 111
Q ss_pred cH-HH------------HHHHHHcCCChhHHHHHHHHhhccccC-----------CCcccHHHHHHHHhccCChHHHHHH
Q 040643 282 TY-NS------------LISGLAQCGYSDKALELFEKMQLDCLK-----------PDCVTVASLVSACASVGAFRTGEQL 337 (968)
Q Consensus 282 ~~-~~------------li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~t~~~ll~a~~~~~~~~~a~~~ 337 (968)
-+ +- .|..|.+.=++...-.+...+...... -..+...-+..-+-+.++++.-...
T Consensus 781 ~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~ 860 (1666)
T KOG0985|consen 781 DFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPW 860 (1666)
T ss_pred ccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHH
Confidence 11 11 233333333322222222222111000 0011122233334445555555666
Q ss_pred HHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC
Q 040643 338 HSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTE----GLT 413 (968)
Q Consensus 338 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~ 413 (968)
++..+..| ..|..++|+|...|...++-.+ +.+.+ |..-=+..+.-||...++--|.-.+++=+-. ++-
T Consensus 861 LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vc 933 (1666)
T KOG0985|consen 861 LESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVC 933 (1666)
T ss_pred HHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhc
Confidence 66666667 5677888888888876654322 11111 1111111122223222221111111100000 000
Q ss_pred CCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCC------CCCceeHHHHHHHHHhcCChhHHHHHHHHHH
Q 040643 414 PNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLP------EDDVVSWTAMIVGFVQHGMFGEALELFEEME 487 (968)
Q Consensus 414 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 487 (968)
-....|....+-+....+.+.=.++...- -..-+.+.++.. ..|+..-..-+.++...+-+.+-++++++..
T Consensus 934 NeNSlfK~~aRYlv~R~D~~LW~~VL~e~--n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIv 1011 (1666)
T KOG0985|consen 934 NENSLFKSQARYLVERSDPDLWAKVLNEE--NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1011 (1666)
T ss_pred CchhHHHHHHHHHHhccChHHHHHHHhcc--ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 00011111111111111111111111100 011112222221 1355555667888899999999999999876
Q ss_pred hcCCC-CChhhHHHHH-HHhhcccchhhhhhhhHhhhhh-----------------------cCCCCchhhhhHHHHHHH
Q 040643 488 NQGIQ-SDNIGFSSAI-SACAGIQALNQGRQIHAQSYIS-----------------------GFSDDLSIGNALISLYAR 542 (968)
Q Consensus 488 ~~g~~-pd~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~-----------------------g~~~~~~~~~~Li~~y~k 542 (968)
-..-. .....+..++ -...+. +.....+....+-.- .+..+....+.|++ .
T Consensus 1012 L~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~ 1087 (1666)
T KOG0985|consen 1012 LDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---N 1087 (1666)
T ss_pred cCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---H
Confidence 43211 1111111111 111111 111111111111000 01111111111111 2
Q ss_pred cCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 543 CGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
-+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|...|.-++.++.+.|.+++-..++.++
T Consensus 1088 i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2334444444443333 356999999999999999999877553 35667899999999999999999999988
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVG 702 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ 702 (968)
.+..-+|.+. +.||-+|+|.+++.+-++... -||+.-......-|...|.++.|.-+|... ..|.-
T Consensus 1160 Rkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~ 1225 (1666)
T KOG0985|consen 1160 RKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAK 1225 (1666)
T ss_pred HHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHH
Confidence 8877666544 789999999999888766543 344444444445555555555544444321 12334
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNME 782 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 782 (968)
|.+.+.+.|.+..|...-++. -+..+|--+-.++...+.+.-|. +-...+--.+.-..-|+.-|...|-+|
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 444444444444444333222 11223333333333333322221 001111112222334444455555555
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
+-....+..+.++--+-|.+.-|+-+|++
T Consensus 1297 ElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 55555555555555555556556555554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.25 E-value=9.2e-10 Score=123.36 Aligned_cols=291 Identities=11% Similarity=0.007 Sum_probs=145.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCChhh-HHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHH
Q 040643 471 VQHGMFGEALELFEEMENQGIQSDNIG-FSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEA 549 (968)
Q Consensus 471 ~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 549 (968)
...|+++.|.+.+.+..+. .|+... +...-.+....|+.+.+.+.+..+.+....+...+.-.....+...|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3568888888888776553 344322 2333344555667777777776665544333333334446666667777777
Q ss_pred HHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 040643 550 YLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTG 626 (968)
Q Consensus 550 ~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 626 (968)
...++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+.......-..+. .+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--~~~--------------- 235 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--IGL--------------- 235 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHH---------------
Confidence 7777665432 44456666677777777777777777776665322211111111111 000
Q ss_pred CCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH---
Q 040643 627 YDSETEASNSLITLYAKCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTF--- 700 (968)
Q Consensus 627 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~--- 700 (968)
++.-......+...+..+..+. +++..+..++..+...|+.++|.+++++..+ ..||....
T Consensus 236 -----------l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~ 302 (409)
T TIGR00540 236 -----------LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLP 302 (409)
T ss_pred -----------HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhH
Confidence 1000111112233333333331 2455555555555555555555555555555 34443321
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh---CCCCCCHHHHHHHHHHHHh
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ---MPIEPDAMVWRTLLSACRV 777 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~---m~~~p~~~~~~~ll~~~~~ 777 (968)
..........++.+++.+.++...+...-.|+.....++..++.+.|++++|.+.++. ....|+..++..|...+..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111122223555555555555443322222213344555555556666666665552 2345555555555555555
Q ss_pred cCChhHHHHHHHHHHc
Q 040643 778 HKNMEIGEYAANHLLE 793 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~ 793 (968)
.|+.+.|....++.++
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666555555443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-07 Score=99.25 Aligned_cols=481 Identities=12% Similarity=0.082 Sum_probs=319.0
Q ss_pred cCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHH
Q 040643 292 QCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYK 371 (968)
Q Consensus 292 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 371 (968)
..++...|..+|++.+... .-+...|.--+..=.+...+..|+.+++.++..-... ...|-..+-|=-..|++..|++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhcccHHHHH
Confidence 3455556666666665432 1122223333334445566666777776666552222 2334444555555667777777
Q ss_pred HHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHH
Q 040643 372 FFLTTE--TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQ 449 (968)
Q Consensus 372 ~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~ 449 (968)
+|++.. +|+...|++.|..=.+-...+.|..++++..
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV----------------------------------------- 201 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV----------------------------------------- 201 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----------------------------------------
Confidence 776643 4666667666666666666666666655543
Q ss_pred HHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhh----cccchhhhhhhhHhhhhhc
Q 040643 450 EILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACA----GIQALNQGRQIHAQSYISG 525 (968)
Q Consensus 450 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g 525 (968)
+..|++.+|--....=.++|....|..+|....+. -.|...-..++.+++ .....+.++-++..++..-
T Consensus 202 -----~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 202 -----LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred -----eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23577888888888888999999999999987763 223333444444444 4566788888998888765
Q ss_pred CCCC-chhhhhHHHHHHHcCC---HHHHHHH-----HHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 526 FSDD-LSIGNALISLYARCGR---IQEAYLV-----FNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 526 ~~~~-~~~~~~Li~~y~k~g~---~~~A~~~-----f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
+... ..++..+...=-+.|+ ++++.-- ++.+... |-.+|--.+..--..|+.+...++|.+.... +.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vp 353 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VP 353 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CC
Confidence 4432 3444455544445565 4444322 2222233 5567877788778889999999999998864 55
Q ss_pred CCc-------chHH---HHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH----hcCCHHHHHHHHhcCC-
Q 040643 594 ANL-------YTFG---SVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA----KCGSIDDAKREFLEMP- 658 (968)
Q Consensus 594 p~~-------~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----k~g~~~~A~~~f~~~~- 658 (968)
|-. ..|. ..+-.-....+.+..++++...++ -++...+++.-+--||+ ++-++..|.+++....
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG 432 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG 432 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 532 1121 122222356789999999999988 35556777777777776 5789999999998876
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchH
Q 040643 659 -EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHY 736 (968)
Q Consensus 659 -~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y 736 (968)
-|-.-++...|..-.+.+.++....++++.++ ..| |..++......=...|+.|.|+.+|+-....-.+.-..-.+
T Consensus 433 ~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 433 KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 56677888888888999999999999999999 667 46678877777778899999999999887653333334456
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHcc----C
Q 040643 737 ACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACR-----VHK-----------NMEIGEYAANHLLEL----E 795 (968)
Q Consensus 737 ~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~l----~ 795 (968)
-..||-=...|.+++|..++++. .-.+...+|-++..--. ..+ ++..|..+++++... +
T Consensus 511 kaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 511 KAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST 590 (677)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence 66777778899999999999997 55566668988876533 233 456677777765543 4
Q ss_pred CCCc--chHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 796 PEDS--ATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 796 p~~~--~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
|... ...-..-|+=...|.-.+...|.++|-
T Consensus 591 ~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 591 PKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 4322 223334456677788888888888773
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.6e-09 Score=109.88 Aligned_cols=242 Identities=13% Similarity=0.170 Sum_probs=168.3
Q ss_pred hcCChhhHHHHHHHhhhcC-Cc-CCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHH
Q 040643 573 QSGYCEGALQVFSQMTQVG-VQ-ANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDA 650 (968)
Q Consensus 573 ~~g~~~~A~~l~~~m~~~g-~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 650 (968)
.+.++++|+.+|+++.++. .+ -|..||+.+|-.-.....+.---+....+ ..+ -+.+...+.+-|+-.++.++|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--dKy--R~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--DKY--RPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--ccC--CccceeeehhHHHHHHhHHHH
Confidence 3455666666666666552 11 13345555553322211111111111111 112 233445566778888888888
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhh
Q 040643 651 KREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 651 ~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
...|++.. ++-...|+.|..-|....+...|++-++..++ +.| |...|.+|..+|.-.++..=|+-+|++..
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-- 425 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL-- 425 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH--
Confidence 88888766 33456888888888888888889999988888 777 56788889999988888888888888664
Q ss_pred cCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-------cCC
Q 040643 727 YGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMP--IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLE-------LEP 796 (968)
Q Consensus 727 ~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------l~p 796 (968)
..+|+ ...+..|++.|.+.++++||.+-+++.- -..+..++..|...+...++.+.|....++-++ .+|
T Consensus 426 -~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 426 -ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred -hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 45665 7788888899999999999998888872 233457777888888888888888888888777 445
Q ss_pred CCcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 797 EDSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 797 ~~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
+-..+-..|++-+.+.++|++|...-.
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 555566778888889999999887544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-08 Score=106.10 Aligned_cols=248 Identities=14% Similarity=0.115 Sum_probs=175.2
Q ss_pred HHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHH
Q 040643 570 GFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDD 649 (968)
Q Consensus 570 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 649 (968)
-+-..+++.+.++++.+..+.. .++...+..=|..+..+|+-.+-..+-..+++. .+..+.+|-++.--|.-.|..++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 3444455555555555554431 222222222233333444433333332223222 45567778888888888899999
Q ss_pred HHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 650 AKREFLEMPEK---NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 650 A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
|++.|.+...- =...|-.....|+-.|..++|+..+...-+ +.|- +..+..+..-|...+..+-|.++|.+.
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A-- 406 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA-- 406 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHH--
Confidence 99999886633 245899999999999999999998888877 5554 456677777888899999999999866
Q ss_pred hcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 040643 726 EYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--P------IEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELE 795 (968)
Q Consensus 726 ~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 795 (968)
++|-|. +-.+.-+.-+....+.+.+|...++.. + -.+ -..+|..|..+||+.+..+.|...+++++.+.
T Consensus 407 -~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 -LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred -HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 477776 444444555556677888888777765 1 112 24567788888999999999999999999999
Q ss_pred CCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 796 PEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 796 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
|.++.+|..++-+|.-.|+.+.|.+...+
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999986553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.4e-11 Score=89.35 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcc
Q 040643 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH 709 (968)
Q Consensus 660 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 709 (968)
||+++||++|.+|+++|+.++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999974
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.6e-10 Score=114.08 Aligned_cols=196 Identities=13% Similarity=0.098 Sum_probs=165.1
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
....+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Confidence 35567778889999999999999999765 33577888999999999999999999999998 4454 557778888
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 783 (968)
.+...|++++|.++|+...+..........+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998654222223556778899999999999999999887 44554 6678888888999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 784 GEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
|....++++++.|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-08 Score=114.42 Aligned_cols=275 Identities=11% Similarity=0.028 Sum_probs=172.6
Q ss_pred HcCCHHHHHHHHHhCCCCC---cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc--hHHHHHHHHhhhhhHHHHH
Q 040643 542 RCGRIQEAYLVFNKIDAKD---NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY--TFGSVVSAAANLANIKQGK 616 (968)
Q Consensus 542 k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~ 616 (968)
..|+++.|.+.+.+..+.. ...+-.....+.+.|+.++|.+.+.+..+. .|+.. .-..........|+.+.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455566655555443321 112222233444556666666666665443 23332 1222344455566666666
Q ss_pred HHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 040643 617 QVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE---KNEVSWN----AMITGFSQHGYALEAINLFEKMK 689 (968)
Q Consensus 617 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~----~li~~~~~~g~~~~A~~l~~~m~ 689 (968)
..+..+.+.. +.+..+...+..+|...|++++|.+.+....+ .+...+. ....+....+..+++.+.+.++.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666654 33555666777777777777777777766552 2222221 11122233344445556666666
Q ss_pred HCCCCC-----ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcch---HHHHHHHHhhcCChHHHHHHHHhC-C
Q 040643 690 KHDVMP-----NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEH---YACVVDLLGRAGCLSRAREFTEQM-P 760 (968)
Q Consensus 690 ~~g~~P-----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~---y~~lv~~l~r~G~~~eA~~~~~~m-~ 760 (968)
+. .| +...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+++.+.+++. .
T Consensus 253 ~~--~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 253 KN--QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HH--CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 63 34 5667888889999999999999999988654 455331 111222223457888888888776 3
Q ss_pred CCCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 761 IEPD-A--MVWRTLLSACRVHKNMEIGEYAAN--HLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 761 ~~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
..|+ + ....+|...|...|+++.|...++ ..++..|++.. +..|+.+|.+.|+.++|.++++.-
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444 3 667788888999999999999999 68888896654 669999999999999999987753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.8e-11 Score=124.91 Aligned_cols=252 Identities=15% Similarity=0.180 Sum_probs=105.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHh-CC----CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhh
Q 040643 535 ALISLYARCGRIQEAYLVFNK-ID----AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANL 609 (968)
Q Consensus 535 ~Li~~y~k~g~~~~A~~~f~~-m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 609 (968)
.+..++.+.|++++|.+++++ +. ..|..-|..+.......++.++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 456777788888888888843 22 224555666666666678888888888888765432 33344444444 577
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-----EKNEVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l 684 (968)
++.++|..+.....+.. ++...+..++..|.+.|+++++.++++.+. +++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887776554432 455666778888888999999988888743 35778888899999999999999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC
Q 040643 685 FEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIE 762 (968)
Q Consensus 685 ~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~ 762 (968)
|++.++ ..|| ......++..+...|+.+++.+.++...+.. +++...+..+..++...|+.++|...+++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999998 7886 4567788889999999999888888886653 445667788899999999999999999887 445
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 040643 763 P-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL 794 (968)
Q Consensus 763 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 794 (968)
| |+.+...+..+....|+.+.|..+.+++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 6 5677777888889999999999988887653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1e-07 Score=99.31 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l 684 (968)
...+...|.+-+..+++-. +.|-..|-.|..+|.-.+...-|.-.|++.. +.|...|.+|..+|.+.++.++|++.
T Consensus 376 EmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred HhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence 3333333333333333321 2344455555555555555555555555443 22555555555555555555555555
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 685 FEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 685 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
|.+....| ..+...+..|...+-+.++.++|..+|+.-.+
T Consensus 455 ykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 455 YKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555543 22334555555555555555555555554433
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.6e-07 Score=97.19 Aligned_cols=525 Identities=17% Similarity=0.180 Sum_probs=281.8
Q ss_pred cCCchHHHHHHhhCC-CCCe-ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHH
Q 040643 161 NGFIDSAKKVFNNLC-FKDS-VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHG 238 (968)
Q Consensus 161 ~g~~~~A~~~f~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 238 (968)
-|+++.|...++... .|+. ..|-.+...-...|+.--|...| +..|++..++.+|+
T Consensus 457 ~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lhd 514 (1636)
T KOG3616|consen 457 DGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLHD 514 (1636)
T ss_pred cCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 466677766666542 2332 24555554444444444443333 33345555555554
Q ss_pred HHH-------Hhc-CCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccc
Q 040643 239 LIF-------KWG-FSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDC 310 (968)
Q Consensus 239 ~~~-------~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 310 (968)
-.. +.| -..|.+-..+++.+..+ ++.+|..+|-+-. + -...|..|....++++|+.+-+.. |
T Consensus 515 ~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~---~ 584 (1636)
T KOG3616|consen 515 ILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK---G 584 (1636)
T ss_pred HHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc---C
Confidence 322 112 23344445555555544 5677777774321 1 123455666667777777765432 1
Q ss_pred cCCCc-ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhh--CCCCCcchHHHH
Q 040643 311 LKPDC-VTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLT--TETENVVLWNVM 387 (968)
Q Consensus 311 ~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~--~~~~~~~~~~~l 387 (968)
.|.- ..-.+.++++...|+-+.|-++- .+..-.-+-|..|.|.|.+-.|.+.-.. ....|......+
T Consensus 585 -~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 585 -HPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred -ChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 1211 11234455555555555444331 1222234567889999988877665422 222344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeH-HHH
Q 040643 388 LVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSW-TAM 466 (968)
Q Consensus 388 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l 466 (968)
..++.+..-++.|=++|+++. +++.+.+.+..-.-+.+|.++-+-..+..++.. ..-
T Consensus 655 a~alik~elydkagdlfeki~----------------------d~dkale~fkkgdaf~kaielarfafp~evv~lee~w 712 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIH----------------------DFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAW 712 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhh----------------------CHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHH
Confidence 566666666666666666653 223333333333333333333322222222211 122
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCH
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRI 546 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 546 (968)
-..+.+.|+++.|+..|-+... ....+.+......+..+..|.+-+...... ..-|..+.+-|+..|++
T Consensus 713 g~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhH
Confidence 3344555666666665544321 122333444445555555555544333211 12233455556666666
Q ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 040643 547 QEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTG 626 (968)
Q Consensus 547 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 626 (968)
+.|.++|-+.. .++--|..|.++|+|++|.++-.+.. |
T Consensus 782 e~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~-------------------------------------~ 819 (1636)
T KOG3616|consen 782 EIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH-------------------------------------G 819 (1636)
T ss_pred HHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc-------------------------------------C
Confidence 66666654432 23444555666666666555543322 1
Q ss_pred CCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHH
Q 040643 627 YDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH--VTFVGVL 704 (968)
Q Consensus 627 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~--~t~~~ll 704 (968)
.+..+..|-+-..-+-+.|++.+|.+++-.+..|+. -|..|-++|..+..+++.++ ..||. .|...+.
T Consensus 820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~ 889 (1636)
T KOG3616|consen 820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFA 889 (1636)
T ss_pred chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHH
Confidence 122233333334445567888888888888877775 36778888888888887765 46664 4677777
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCC---CC-CHHHHHHHHHH------
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPI---EP-DAMVWRTLLSA------ 774 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~---~p-~~~~~~~ll~~------ 774 (968)
.-+...|++.+|...|-+.. -+-.-|.+|-.+|.+++|+.+-+.-+- +. -...|..-+++
T Consensus 890 ~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkl 959 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKL 959 (1636)
T ss_pred HHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHH
Confidence 78888888888888876552 256678888888888888887765421 11 14445433332
Q ss_pred HHhcCChhHHHHHH------HHHHcc-----CCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 775 CRVHKNMEIGEYAA------NHLLEL-----EPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 775 ~~~~g~~~~a~~~~------~~~~~l-----~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
..+||-++.|...+ +-++++ ...-+..++.++--+...|++++|.+-.
T Consensus 960 lnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 960 LNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhh
Confidence 23455554444321 222222 2345677888999999999999997743
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-08 Score=111.17 Aligned_cols=270 Identities=11% Similarity=0.068 Sum_probs=149.2
Q ss_pred cCCHHHHHHHHHhCCCC--C-cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHH--HHHHHHhhhhhHHHHHH
Q 040643 543 CGRIQEAYLVFNKIDAK--D-NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFG--SVVSAAANLANIKQGKQ 617 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~--d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 617 (968)
.|+++.|++.....+.. + ...+-.......+.|+++.|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566666555544332 1 112221222234556666666666666543 34443222 12334455666666666
Q ss_pred HHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC---CH--------HHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 618 VHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK---NE--------VSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 618 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---d~--------~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+. +. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665543 334556666666666667777666666655521 11 123333333333344444455555
Q ss_pred HHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHh--hcCChHHHHHHHHhC-CCCC
Q 040643 687 KMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLG--RAGCLSRAREFTEQM-PIEP 763 (968)
Q Consensus 687 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~--r~G~~~eA~~~~~~m-~~~p 763 (968)
+.-+. .+.+......+..++...|+.++|.+.++...+ ..|+.. ++.+++ ..|+.+++.+.+++. .-.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~----l~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER----LVLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH----HHHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 54331 222445566666677777777777777765543 233332 222222 347777777777665 4455
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 764 D-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 764 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+ +....++...|...++++.|+..++++++++|++ ..|..|+.++.+.|+-++|.+.++.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 3445555556777777777888888888877754 4466778888888888877776553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.9e-06 Score=88.51 Aligned_cols=537 Identities=16% Similarity=0.186 Sum_probs=278.9
Q ss_pred chHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHH
Q 040643 164 IDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHI-LGTVPTPYAISSALSACTKIELFEIGEQFHGLIFK 242 (968)
Q Consensus 164 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 242 (968)
++.+......||+ .|-.-+..+..+|+.-.....|++.+. ..+.-....|...++.....+-++.+..++...++
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3455555666653 677777777778888777777777544 23334445666666666666666666666666554
Q ss_pred hcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHH
Q 040643 243 WGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLV 322 (968)
Q Consensus 243 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 322 (968)
. ++..-+--|..+++.+++++|.+.+......|... .+.|. .+...|.-+.
T Consensus 167 ~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~--------sk~gk-----------------Sn~qlw~elc 217 (835)
T KOG2047|consen 167 V----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV--------SKKGK-----------------SNHQLWLELC 217 (835)
T ss_pred c----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh--------hhccc-----------------chhhHHHHHH
Confidence 3 23335555666666777777776666655332211 01110 1111111111
Q ss_pred HHHhccCChHHHHHHHHHHHHhCC--CCC--hhhHhHHHHHHHhcCChhHHHHHHhhCCCC--CcchHHHHHHHHHhcCC
Q 040643 323 SACASVGAFRTGEQLHSYAIKVGI--SKD--IIVEGSMLDLYVKCSDVETAYKFFLTTETE--NVVLWNVMLVAYGQLND 396 (968)
Q Consensus 323 ~a~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~ 396 (968)
...++..+.-...+ .+.+++.|+ -+| -+.|++|.+.|.+.|.++.|+.+|++.... .+.-++.+..+|++-..
T Consensus 218 dlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 218 DLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEE 296 (835)
T ss_pred HHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHH
Confidence 11111111111111 112222332 223 367889999999999999999998775432 23335555555554322
Q ss_pred HHHHHHHHHHHH--hcCCCCCccchhhhhhhhccCCchhhhHHHHHhh--CChHHHHHHHhhCCCCCceeHHHHHHHHHh
Q 040643 397 LSESFQIFKQMQ--TEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL--GNLNTAQEILRRLPEDDVVSWTAMIVGFVQ 472 (968)
Q Consensus 397 ~~~A~~l~~~m~--~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 472 (968)
..-+..+ ++. +.|-.-+...+..-+ .-++.+ +..-..-.+.-+-.+.++..|..-+.. .
T Consensus 297 ~~~~~~m--e~a~~~~~n~ed~~dl~~~~-------------a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~ 359 (835)
T KOG2047|consen 297 SCVAAKM--ELADEESGNEEDDVDLELHM-------------ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--Y 359 (835)
T ss_pred HHHHHHH--hhhhhcccChhhhhhHHHHH-------------HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--h
Confidence 1111111 010 001111111111100 000000 011111112222223344555544433 3
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 040643 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLV 552 (968)
Q Consensus 473 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 552 (968)
.|++.+-...|.+..+. +.|-.. ...-...|..+.+.|-..|+++.|+.+
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka-----------------------------~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKA-----------------------------VGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccC-----------------------------CCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 45666666677666553 333211 001123455667777777777777777
Q ss_pred HHhCCCCCcc-------cHHHHHHHHHhcCChhhHHHHHHHhhhcCCc----------C-------CcchHHHHHHHHhh
Q 040643 553 FNKIDAKDNI-------SWNGLISGFAQSGYCEGALQVFSQMTQVGVQ----------A-------NLYTFGSVVSAAAN 608 (968)
Q Consensus 553 f~~m~~~d~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-------~~~t~~~ll~a~~~ 608 (968)
|++...-+-. .|-.-...=.++.+++.|+++.+.....--. | +...++..++---.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 7766543322 2333333444556667777766554321111 1 11223344444455
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC----CCCHH-HHHHHHHHHHhc---CCHHH
Q 040643 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP----EKNEV-SWNAMITGFSQH---GYALE 680 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~d~~-~~~~li~~~~~~---g~~~~ 680 (968)
.|-++..+.+++.+++..+.....+-| ..-.+-...-+++|.+++++-. -|++. .||+.+.-+.+. -..+.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 677888888888888866543222222 1112344556889999999755 45654 788877766542 27899
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHc--ccCcHHHHHHHHHHhhh--------------------hcCCCCCcchHHH
Q 040643 681 AINLFEKMKKHDVMPNHVTFVGVLSACS--HVGLVNEGLRYFESMST--------------------EYGLVPKPEHYAC 738 (968)
Q Consensus 681 A~~l~~~m~~~g~~Pd~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~--------------------~~~i~p~~~~y~~ 738 (968)
|..+|++.++ |.+|...-+..|+.|-. .-|+...|..+++.... .||+.-+.+.|.-
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 9999999999 78888765555555422 34777777777765532 2455544444432
Q ss_pred H----------------HHHHhhcCChHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCChhH
Q 040643 739 V----------------VDLLGRAGCLSRAREFTEQM--PIEP--DAMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 739 l----------------v~~l~r~G~~~eA~~~~~~m--~~~p--~~~~~~~ll~~~~~~g~~~~ 783 (968)
- .++=.+.|..+.|..++.-. -..| +...|.+.=.--..|||-+-
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 1 23334566777777666544 1223 36667666666667777433
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.1e-10 Score=86.67 Aligned_cols=50 Identities=30% Similarity=0.494 Sum_probs=48.0
Q ss_pred CCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcc
Q 040643 177 KDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTK 226 (968)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 226 (968)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-06 Score=89.34 Aligned_cols=414 Identities=11% Similarity=0.101 Sum_probs=197.6
Q ss_pred cCCchHHHHHHhhC---CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHH
Q 040643 161 NGFIDSAKKVFNNL---CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFH 237 (968)
Q Consensus 161 ~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 237 (968)
.+++..|+.+|+.. ..++...|---+..=.++.....|..++++....=...|.. |-..+..=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 35667778888765 34556667666777777777777877777765421111111 111111112234455555555
Q ss_pred HHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCC--CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCc
Q 040643 238 GLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ--QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDC 315 (968)
Q Consensus 238 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 315 (968)
..-.+ .+||...|++.|++-.+...++.|+.++++.. +|++.+|---.+---++|+..-|..+|..
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer---------- 232 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER---------- 232 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH----------
Confidence 54433 24555555555555555555555555555432 45555554444444445555555544444
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHh-CC-CCChhhHhHHHHHHHhcCChhHHHHHHh----hCCCCC-cchHHHHH
Q 040643 316 VTVASLVSACASVGAFRTGEQLHSYAIKV-GI-SKDIIVEGSMLDLYVKCSDVETAYKFFL----TTETEN-VVLWNVML 388 (968)
Q Consensus 316 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~----~~~~~~-~~~~~~li 388 (968)
+++. |- ..+..++++....=.++..++.|+-+|. .+|... ...|....
T Consensus 233 -------------------------Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 233 -------------------------AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred -------------------------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4332 10 1112233344444444555555555553 233221 22232222
Q ss_pred HHHHhcCCHH---HHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhC---CCCCcee
Q 040643 389 VAYGQLNDLS---ESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRL---PEDDVVS 462 (968)
Q Consensus 389 ~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~ 462 (968)
.-=-+.|+.. +++--=++++ ++.. .+-|-.+
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~q-------------------------------------------YE~~v~~np~nYDs 324 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQ-------------------------------------------YEKEVSKNPYNYDS 324 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhH-------------------------------------------HHHHHHhCCCCchH
Confidence 2222333322 2221111111 0111 1224456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-------hhHHH---HHHHhhcccchhhhhhhhHhhhhhcCCCCchh
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDN-------IGFSS---AISACAGIQALNQGRQIHAQSYISGFSDDLSI 532 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~---ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 532 (968)
|-..+..--..|+.+...++|++.+.. ++|-. +.|.- .+-.-....+.+.+++++...++ -++...++
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFt 402 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFT 402 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccch
Confidence 666777777778888888888887764 44422 11111 11112345666777777777666 33444555
Q ss_pred hhhHHHHHH----HcCCHHHHHHHHHhCCC--CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 040643 533 GNALISLYA----RCGRIQEAYLVFNKIDA--KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAA 606 (968)
Q Consensus 533 ~~~Li~~y~----k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 606 (968)
+..+--||+ ++-++..|++++..... |..-.+-.-|..=.+.++++..-.++.+.+.-+ .-|..++.-....-
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHH
Confidence 555555554 44566666666554331 223334444444444555555555555554432 12334444443334
Q ss_pred hhhhhHHHHHHHHHHHHHh-CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC
Q 040643 607 ANLANIKQGKQVHAMIIKT-GYDSETEASNSLITLYAKCGSIDDAKREFLEMP 658 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 658 (968)
..+|+.+.++.++..++.. .++....++.+.|+.=..+|.++.|..+++++.
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 4455555555555555442 122233344455555555555555555555544
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.3e-06 Score=95.32 Aligned_cols=481 Identities=16% Similarity=0.175 Sum_probs=254.1
Q ss_pred CCcchHHHhhhccCCCCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHH
Q 040643 59 GDLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGL 138 (968)
Q Consensus 59 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~ 138 (968)
.++.+|..+|-+-... ...|..|....+|++++.+-+.. |...-...-.+.++++...|.-. .+-.+
T Consensus 545 kkfk~ae~ifleqn~t-----e~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~--ka~el--- 611 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQNAT-----EEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDE--KAAEL--- 611 (1636)
T ss_pred hhhhHHHHHHHhcccH-----HHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchh--hhhhh---
Confidence 4788888888654322 24566677777888888765432 22111122234456665555433 11111
Q ss_pred HHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhh--CCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhh
Q 040643 139 IISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNN--LCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYA 216 (968)
Q Consensus 139 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 216 (968)
..+.--.-+-|..|.|.|.+..|.+.-.. ....|.....-+..++.+..-++.|=++|+++..
T Consensus 612 ------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d--------- 676 (1636)
T KOG3616|consen 612 ------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD--------- 676 (1636)
T ss_pred ------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------
Confidence 11111224567789999998887776422 2223433444455566666667777777776542
Q ss_pred HHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhH-HHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCC
Q 040643 217 ISSALSACTKIELFEIGEQFHGLIFKWGFSSETFV-CNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGY 295 (968)
Q Consensus 217 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 295 (968)
+-..+..+.+-..+..|.++-... ++..+.. -..--.-+...|+++.|..-|-+.. ..-..|.+-.....
T Consensus 677 ~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~ake 747 (1636)
T KOG3616|consen 677 FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKE 747 (1636)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhh
Confidence 122233333322333333332211 1111111 0111122334466666666654421 12223455566778
Q ss_pred hhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhh
Q 040643 296 SDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLT 375 (968)
Q Consensus 296 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 375 (968)
+.+|+.+++.++.... -.--|..+..-|++.|+++.|+++|-.. ..++.-|+||.+.|++++|.++-.+
T Consensus 748 w~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence 8888888887765432 2234677778888888988888887532 2345678899999999999988888
Q ss_pred CCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHh
Q 040643 376 TETEN--VVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILR 453 (968)
Q Consensus 376 ~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 453 (968)
...|. .++|-+-..-+-+.|++.+|.++|-. .|.++.+.++
T Consensus 817 ~~~~e~t~~~yiakaedldehgkf~eaeqlyit----------------------i~~p~~aiqm--------------- 859 (1636)
T KOG3616|consen 817 CHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT----------------------IGEPDKAIQM--------------- 859 (1636)
T ss_pred hcCchhHHHHHHHhHHhHHhhcchhhhhheeEE----------------------ccCchHHHHH---------------
Confidence 76653 34455555555666666666665322 2233333333
Q ss_pred hCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhh
Q 040643 454 RLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIG 533 (968)
Q Consensus 454 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 533 (968)
|-+.|..+..+++..+-.-.-+. .|-..+-.-+...|++..+++-+-.. .-+
T Consensus 860 ----------------ydk~~~~ddmirlv~k~h~d~l~---dt~~~f~~e~e~~g~lkaae~~flea---------~d~ 911 (1636)
T KOG3616|consen 860 ----------------YDKHGLDDDMIRLVEKHHGDHLH---DTHKHFAKELEAEGDLKAAEEHFLEA---------GDF 911 (1636)
T ss_pred ----------------HHhhCcchHHHHHHHHhChhhhh---HHHHHHHHHHHhccChhHHHHHHHhh---------hhH
Confidence 34445555555544443211111 12222223333345555544433221 124
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
.+-++||...+.+++|.++-..--..|..-- ..-.++++=-.+.|.+++++. |+ +...+.-.+..+.++
T Consensus 912 kaavnmyk~s~lw~dayriaktegg~n~~k~--v~flwaksiggdaavkllnk~---gl------l~~~id~a~d~~afd 980 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKTEGGANAEKH--VAFLWAKSIGGDAAVKLLNKH---GL------LEAAIDFAADNCAFD 980 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccccccHHHH--HHHHHHHhhCcHHHHHHHHhh---hh------HHHHhhhhhcccchh
Confidence 6788999999999999988765433332111 111223333346667766652 10 112223344556666
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCH--HHHH
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNE--VSWN 666 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~--~~~~ 666 (968)
.|..+-....+... +.+ .-.+.-.+-..|++++|.+-+-+..+-|. ++|.
T Consensus 981 ~afdlari~~k~k~-~~v--hlk~a~~ledegk~edaskhyveaiklntynitwc 1032 (1636)
T KOG3616|consen 981 FAFDLARIAAKDKM-GEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWC 1032 (1636)
T ss_pred hHHHHHHHhhhccC-ccc--hhHHhhhhhhccchhhhhHhhHHHhhcccccchhh
Confidence 66666655555432 222 22333445678999999877766654332 4554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.8e-08 Score=117.44 Aligned_cols=241 Identities=14% Similarity=0.085 Sum_probs=176.2
Q ss_pred hhhHHHHHHHhhhcCCcCCcch-HHHHHHHHh---------hhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCC
Q 040643 577 CEGALQVFSQMTQVGVQANLYT-FGSVVSAAA---------NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGS 646 (968)
Q Consensus 577 ~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 646 (968)
.++|+.+|++..+. .|+... +..+..++. ..++.++|...+..+++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45677777776643 454432 222222222 2244778888888887754 4467778888889999999
Q ss_pred HHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHH
Q 040643 647 IDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFES 722 (968)
Q Consensus 647 ~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~ 722 (968)
+++|...|++.. .| +...|..+...+...|++++|+..|++.++ +.|+.. .+..++.++...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999876 44 567899999999999999999999999999 778754 334445556678999999999998
Q ss_pred hhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 723 MSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLL-SACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 723 m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
..+. ..|+ +..+..+..+|...|++++|.+.++++ +..|+......++ ..+...| +.+....+++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7543 1354 555777889999999999999999987 6677754444444 4456666 478888888887655555
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 800 ATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 800 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.....+..+|+-.|+-+.+..+ +.+++
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 5555589999999999988888 44544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-07 Score=94.13 Aligned_cols=311 Identities=14% Similarity=0.151 Sum_probs=168.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHhhcccchhhhhhhhHhhhhhc-CCCC--chhhhhHHHHHHHcCCH
Q 040643 471 VQHGMFGEALELFEEMENQGIQSDN-IGFSSAISACAGIQALNQGRQIHAQSYISG-FSDD--LSIGNALISLYARCGRI 546 (968)
Q Consensus 471 ~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~--~~~~~~Li~~y~k~g~~ 546 (968)
.-++++++|.++|-+|.+. .|.. .+-.++-+.+-+.|..+.|..+|.-+.++. +..+ ....-.|..=|.+.|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3457899999999999873 2221 122233344445555555555555544431 1111 11222333444444555
Q ss_pred HHHHHHHHhCCCCCcc---cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040643 547 QEAYLVFNKIDAKDNI---SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMII 623 (968)
Q Consensus 547 ~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 623 (968)
+.|+.+|..+.+.+.. +...|+..|-+..+|++|++.-+++.+.+-++..+-+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI------------------------ 179 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI------------------------ 179 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH------------------------
Confidence 5555555444432222 2233444444444444444444444433322222111
Q ss_pred HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--H
Q 040643 624 KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH--V 698 (968)
Q Consensus 624 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~--~ 698 (968)
...|--|...+.-..+++.|..++.+..+ | .+..--.+...+...|++++|++.++...+ -.|+. .
T Consensus 180 -------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~yl~e 250 (389)
T COG2956 180 -------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE--QNPEYLSE 250 (389)
T ss_pred -------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH--hChHHHHH
Confidence 11223344444455667777777776652 2 333333455667788888888888888887 45664 3
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHh
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFT-EQMPIEPDAMVWRTLLSACRV 777 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~-~~m~~~p~~~~~~~ll~~~~~ 777 (968)
+...|..+|.+.|+.+++..++..+.+. .|..+.-..|.++.....-.++|...+ +...-+|+......|+..-..
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc
Confidence 5667777888888888888888877544 444444444545444333344444433 333445665544444432111
Q ss_pred cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEec
Q 040643 778 HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFV 850 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 850 (968)
=++.|+|.+...+.+.|....++..|-+.--.-+=+.|+|.-
T Consensus 328 -------------------------------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 328 -------------------------------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred -------------------------------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 123466777777777777777888887766666666676653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-06 Score=89.13 Aligned_cols=399 Identities=13% Similarity=0.065 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHHh---cCCCCCccchhhhhhhhccCCchhhh---HHHHHhhCChHHHHHHHhhCCCCCceeHHHHHH-H
Q 040643 397 LSESFQIFKQMQT---EGLTPNQYTYPTILRTCTSLGALSLG---EQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIV-G 469 (968)
Q Consensus 397 ~~~A~~l~~~m~~---~g~~p~~~t~~~ll~a~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~-~ 469 (968)
+..|.+-|..... ....|...+..++=...+..++.+.. .+.+..+++-..|.......++.-...-+.|+. -
T Consensus 59 yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~ 138 (564)
T KOG1174|consen 59 YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLAR 138 (564)
T ss_pred HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHH
Confidence 3444444444332 23556666666666666666655443 355667788889998888887654444444443 3
Q ss_pred HHhcC-Ch-hH-------------HHHHHHHHHhcCCC---------------CChhhHHHHHHHhhc--ccchhhhhhh
Q 040643 470 FVQHG-MF-GE-------------ALELFEEMENQGIQ---------------SDNIGFSSAISACAG--IQALNQGRQI 517 (968)
Q Consensus 470 ~~~~g-~~-~~-------------A~~l~~~m~~~g~~---------------pd~~t~~~ll~a~~~--~~~~~~a~~i 517 (968)
+-+.| +- ++ |++.+.-..+.++. |...+...-+.+++. .++-..+.+.
T Consensus 139 l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t 218 (564)
T KOG1174|consen 139 LQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQT 218 (564)
T ss_pred HHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhH
Confidence 33332 21 11 22222222222222 222333333333332 2222233333
Q ss_pred hHhh-hhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHH---HHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 518 HAQS-YISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGL---ISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 518 ~~~~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
+-.+ ...-++.|+....++.+.|...|+.++|...|++...-|+.+..+| .--+.+.|+.+....+...+....-
T Consensus 219 ~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~- 297 (564)
T KOG1174|consen 219 FLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK- 297 (564)
T ss_pred HHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-
Confidence 3333 3345677889999999999999999999999998876666555444 3345677888888877777654321
Q ss_pred CCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHH
Q 040643 594 ANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMIT 670 (968)
Q Consensus 594 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~ 670 (968)
-...-+..-+...-...+.+.|..+-+..++.. +.++..+-.-...+...|+.++|.-.|.... .| +..+|.-++.
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 111111111222234455666666655555532 1223333333356667899999999998755 44 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHH-HHHcc-cCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVL-SACSH-VGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA 746 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~ 746 (968)
.|...|...+|.-+-....+ .-|+. .|...+. ..|.- .-.-++|.+++++- ..+.|+ ......+..++.+-
T Consensus 377 sYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS---LKINPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhh---hccCCccHHHHHHHHHHHHhh
Confidence 99999999999998888776 45554 4444442 23332 33458888888855 366888 66677788999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 747 GCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 747 G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
|+.+++..++++. ...||....+.|....+..+.++.|..-+.+++.++|+|-.+.
T Consensus 452 g~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred CccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 9999999999987 7889999999999999999999999999999999999886443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.7e-08 Score=108.99 Aligned_cols=229 Identities=16% Similarity=0.217 Sum_probs=169.4
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHh-----CC-CCCh-hHHhHHhhHHHhcCCHHHHHHHHhcCCC----------
Q 040643 597 YTFGSVVSAAANLANIKQGKQVHAMIIKT-----GY-DSET-EASNSLITLYAKCGSIDDAKREFLEMPE---------- 659 (968)
Q Consensus 597 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~k~g~~~~A~~~f~~~~~---------- 659 (968)
.|+..+...|...|+++.|.+.++..++. |. .|.+ ...+.+..+|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556777888888888888888776653 21 1222 2334567788999999999999887651
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC
Q 040643 660 KN-EVSWNAMITGFSQHGYALEAINLFEKMKK-----HDVMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP 731 (968)
Q Consensus 660 ~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 731 (968)
|. ..+++.|...|...|++++|...+++..+ .|..+..+ -+..+...|.+.+.+++|..++....+.+.-.|
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 34788888899999999998888777654 23333332 467777789999999999999998766665333
Q ss_pred C------cchHHHHHHHHhhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 040643 732 K------PEHYACVVDLLGRAGCLSRAREFTEQM---------PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLEL- 794 (968)
Q Consensus 732 ~------~~~y~~lv~~l~r~G~~~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 794 (968)
. ..+|+.|..+|...|+++||++++++. ...+. ....+.|..+|...++.+.|...++..+.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3 456999999999999999999999986 12333 556667888898888888888777765554
Q ss_pred ---CCCC---cchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 795 ---EPED---SATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 795 ---~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.|++ ..+|-.|+-+|...|++++|.++-...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4555 456777888999999999999976554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-05 Score=87.63 Aligned_cols=421 Identities=12% Similarity=0.095 Sum_probs=237.6
Q ss_pred CCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhh
Q 040643 345 GISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPT 421 (968)
Q Consensus 345 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 421 (968)
.+..|..+|..|.-....+|+++.+.+.|++... .....|+.+-..|...|.-..|..+++.-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999998653 2456799999999999999999999887665543444433322
Q ss_pred hh-hhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCCC
Q 040643 422 IL-RTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQ------GIQSD 494 (968)
Q Consensus 422 ll-~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd 494 (968)
+. +.|.. +.+..++++++-.+.... .+.|-
T Consensus 398 masklc~e-------------------------------------------~l~~~eegldYA~kai~~~~~~~~~l~~~ 434 (799)
T KOG4162|consen 398 MASKLCIE-------------------------------------------RLKLVEEGLDYAQKAISLLGGQRSHLKPR 434 (799)
T ss_pred HHHHHHHh-------------------------------------------chhhhhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 22 22221 112223333333322220 11121
Q ss_pred hhhHHHHHHHh--hccc-------chhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhC----CCCCc
Q 040643 495 NIGFSSAISAC--AGIQ-------ALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKI----DAKDN 561 (968)
Q Consensus 495 ~~t~~~ll~a~--~~~~-------~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m----~~~d~ 561 (968)
..-+..+--.. .... ...++.+.++..++.+.. |+.+.--+.--|+..++++.|.....+. ...+.
T Consensus 435 ~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~ 513 (799)
T KOG4162|consen 435 GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA 513 (799)
T ss_pred HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH
Confidence 11111111000 0011 112344444455444433 2222223444577778888887666543 33467
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC-cchHHHHHHHHhhhhhHHHHHHHHHHHHHhC-CCCChhHHhHHhh
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN-LYTFGSVVSAAANLANIKQGKQVHAMIIKTG-YDSETEASNSLIT 639 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~ 639 (968)
..|.-+.-.+...+++.+|+.+.+....+ -|+ ......=+..-...++.+++......+...- -.+.
T Consensus 514 ~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~--------- 582 (799)
T KOG4162|consen 514 KAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG--------- 582 (799)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh---------
Confidence 78888888888888888888887765543 111 1000000111111333333333332222210 0000
Q ss_pred HHHhcCCHHHHHHHHhcCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH--------HHHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMP----E-KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV--------TFVGVLSA 706 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~----~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--------t~~~ll~a 706 (968)
....|+-....+.+..+. + .|.++-..-+.+... -+.+.+..-.. |...-+.|+.. .+......
T Consensus 583 -~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~ 659 (799)
T KOG4162|consen 583 -VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADL 659 (799)
T ss_pred -HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHH
Confidence 001111222333333332 1 122211111222221 11111110000 22222333321 23344556
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 783 (968)
+...+..++|+..+.+.. ++.|. ...|.--.+.+...|+++||.+.+... .+.|+ ..+..+|...+...|+..+
T Consensus 660 ~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcch
Confidence 788888899987777553 55555 555666678889999999999877665 78888 6667777777888999989
Q ss_pred HHH--HHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 784 GEY--AANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 784 a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
|+. +...+++++|.|+.+|..|+.+.-+.|+.++|.+-...--
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 988 9999999999999999999999999999999999766553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-07 Score=92.87 Aligned_cols=277 Identities=14% Similarity=0.125 Sum_probs=185.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 040643 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLV 552 (968)
Q Consensus 473 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 552 (968)
.|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+-.....+.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 589999999998877765444 3456666677888899999999999988886677788888888889999999999877
Q ss_pred HHh---CCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-------chHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 553 FNK---IDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-------YTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 553 f~~---m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
.++ |..+++.........|.+.|++.+.+.+..+|.+.|+--|+ .++..++.-+...+..+.-+..++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 765 45567888888999999999999999999999998865554 45666666555555554444444433
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK--NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVT 699 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t 699 (968)
-+. ...++.+..+++.-+..||+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-.+ -.|+ +-.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~L 330 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPLL 330 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHH--hCCCChhH
Confidence 221 2345555566666677777777777666554421 222 1122334455566655555555554 2332 345
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
+..|...|.+.+.+.+|.++|+... ...|+..+|+-+.+.|.+.|+.++|.+..++
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 5566666666666666666666443 3466666666666666666666666665554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.3e-07 Score=95.23 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=119.0
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC---cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHH
Q 040643 529 DLSIGNALISLYARCGRIQEAYLVFNKIDAKD---NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA 605 (968)
Q Consensus 529 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 605 (968)
...+|-++.--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..|.|+..+...-+.= .-...-+..+---
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 45556667777777788888888887655433 3478888888988899998888776654320 1111112222233
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040643 606 AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLF 685 (968)
Q Consensus 606 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 685 (968)
|.+.++++.|.+++..+.... +.|+.+.+-+.-++-+.+.+.+|...|+...++ .
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------i 444 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------I 444 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------h
Confidence 555666677777666665432 445666666666566666666666666543310 0
Q ss_pred HHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 040643 686 EKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP 763 (968)
Q Consensus 686 ~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p 763 (968)
+.... -+| -..|++.|..+|.+.+.+++|+.+|+..... .+-+..+|+.++-+|.-.|+++.|.+.+.+. .+.|
T Consensus 445 k~~~~--e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 445 KSVLN--EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hhccc--cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 00000 001 1123444445555555555555555543321 1222455555555555555555555555554 5566
Q ss_pred CHHHHHHHHHHHH
Q 040643 764 DAMVWRTLLSACR 776 (968)
Q Consensus 764 ~~~~~~~ll~~~~ 776 (968)
|..+-..+|+.+.
T Consensus 521 ~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 521 DNIFISELLKLAI 533 (611)
T ss_pred ccHHHHHHHHHHH
Confidence 6655566665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.9e-08 Score=103.37 Aligned_cols=208 Identities=15% Similarity=0.096 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHHHh-CCCCC--hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040643 611 NIKQGKQVHAMIIKT-GYDSE--TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 611 ~~~~a~~~~~~~~~~-g~~~~--~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l 684 (968)
..+.+..-+..++.. ...|+ ...+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445555555555542 22222 4567778888999999999999999875 34678999999999999999999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--CC
Q 040643 685 FEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--PI 761 (968)
Q Consensus 685 ~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~ 761 (968)
|++.++ +.|+ ..++..+..++...|++++|.+.|+...+ +.|+-........++.+.++.++|.+.+++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 7897 45788888899999999999999998754 4565332222333456678999999999664 23
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHH-------HccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 762 EPDAMVWRTLLSACRVHKNMEIGEYAANHL-------LELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 762 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.|+...|. + .....|+...++ +.+.+ .++.|+.+.+|..|+.+|...|++++|....++..+
T Consensus 196 ~~~~~~~~--~-~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 DKEQWGWN--I-VEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CccccHHH--H-HHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44433332 1 222345554432 33333 366777889999999999999999999998665544
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.7e-08 Score=112.18 Aligned_cols=209 Identities=11% Similarity=0.030 Sum_probs=159.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH---------hcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYA---------KCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGY 677 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~ 677 (968)
+++++|...+..+++.. +.+...+..+...|. ..+++++|...+++.. ..+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678888888888743 223445555555443 2345889999999876 3377889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-chHHHHHHHHhhcCChHHHHHH
Q 040643 678 ALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-EHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
+++|+..|++.++ +.|+. ..+..+..++...|++++|...++...+ +.|.. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 77875 4678888899999999999999998864 46663 2333445567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 756 TEQM--PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 756 ~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+++. ...|+ +..+..+..++...|+.+.|+..++++....|++......|+..|...| ++|....+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 9886 22465 4445555556778999999999999999999998888899999999888 46766433343
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.6e-06 Score=82.52 Aligned_cols=310 Identities=13% Similarity=0.114 Sum_probs=155.0
Q ss_pred hHHHHHHHhhCCC--CCceeHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhccc--chhhhhhhhH
Q 040643 445 LNTAQEILRRLPE--DDVVSWTA-MIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQ--ALNQGRQIHA 519 (968)
Q Consensus 445 ~~~a~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~i~~ 519 (968)
.++|..++.+... |+....|. |.-+|.+.+-++-+.++++--.+. -||+ |+..=+.+|..-. +-..+.+-..
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHH
Confidence 3445555555443 33334443 445677888888888887776653 3443 3444444443221 1122222222
Q ss_pred hhhhhcCCCCchhhhhHHHHHHHc-----CCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC
Q 040643 520 QSYISGFSDDLSIGNALISLYARC-----GRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA 594 (968)
Q Consensus 520 ~~~~~g~~~~~~~~~~Li~~y~k~-----g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 594 (968)
.+...+-.. -..+.-.++. ..-+.|.+++-.+...=+.+--.|+--|.+.++..+|..+.+++.. ..|
T Consensus 244 ~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP 316 (557)
T KOG3785|consen 244 ELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTP 316 (557)
T ss_pred HHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CCh
Confidence 222221110 0011111221 1234455544333222122233355567888888888888777642 233
Q ss_pred CcchHHHHHHHH-----hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHH
Q 040643 595 NLYTFGSVVSAA-----ANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMI 669 (968)
Q Consensus 595 ~~~t~~~ll~a~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li 669 (968)
-....-.+..+- .....+.-|.+.+..+-.++.+.|... --.+|.
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp------------------------------GRQsmA 366 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP------------------------------GRQSMA 366 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc------------------------------chHHHH
Confidence 333333332221 112234455555555544444433221 122333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCCh
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCL 749 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~ 749 (968)
+.+.-.-++++.+-.+.....- +.-|.+--..+..|....|.+.+|.++|-.+... .++-+.--...+...|.+.|+.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCc
Confidence 3333334444444444444331 2223333344566677777777777777655321 2222222233445677788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHccCC
Q 040643 750 SRAREFTEQMPIEPDAMVWRTLL-SACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 750 ~eA~~~~~~m~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
+-|.+++-++.-..+..+...|+ +-|.+.+.+--|-++++.+-.++|
T Consensus 445 ~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 445 QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 88888877776555555444444 448888888888888888888887
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=0.00031 Score=76.93 Aligned_cols=547 Identities=15% Similarity=0.182 Sum_probs=314.8
Q ss_pred ccchhHHHHHHHhcCCchHHHHHHhhC----CC-CCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040643 148 PLISNPLIDLYAKNGFIDSAKKVFNNL----CF-KDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALS 222 (968)
Q Consensus 148 ~~~~~~li~~y~~~g~~~~A~~~f~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 222 (968)
+.+|-.-+....+.|++..-+..|++. |. -....|.-.+.-....|-++-++.+|++..+- ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 456666677778889999999999864 22 13346888888888899999999999998763 3344666677
Q ss_pred hhcccCchHHHHHHHHHHHHhc------CCCchhHHHHHHHHhhccCCh---hHHHHHHhhCCCC--C--cccHHHHHHH
Q 040643 223 ACTKIELFEIGEQFHGLIFKWG------FSSETFVCNALVTLYSRSGNL---TSAEQIFSKMQQR--D--GVTYNSLISG 289 (968)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~--~--~~~~~~li~~ 289 (968)
-+...+++++|.+.+..++... .+.+-..|.-+-+..++.-+. -....++..+..+ | ...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7778888888888887766432 134445566665555554322 2334445555433 3 2479999999
Q ss_pred HHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHH
Q 040643 290 LAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETA 369 (968)
Q Consensus 290 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 369 (968)
|.+.|.+++|.++|++-...- ....-|+.+..+|+.......+..+- ...+.+..+. ..-+++-.
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~ 322 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELH 322 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHH
Confidence 999999999999998876542 22333666666665433222221111 0111111110 00112222
Q ss_pred HHHHhhCCC---------------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--chhhhhhhhccCCch
Q 040643 370 YKFFLTTET---------------ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQY--TYPTILRTCTSLGAL 432 (968)
Q Consensus 370 ~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~ 432 (968)
..-|+.+.+ .++..|..-... ..|+..+-...|.+..+. +.|-.. ....+-.
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~-------- 391 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWV-------- 391 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHH--------
Confidence 333333221 244455444332 356677777777776653 222211 1111111
Q ss_pred hhhHHHHHhhCChHHHHHHHhhCCCCCce-------eHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHh
Q 040643 433 SLGEQIHTQLGNLNTAQEILRRLPEDDVV-------SWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISAC 505 (968)
Q Consensus 433 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 505 (968)
.-..++..-|+++.|+.+|++...-+-. .|..-...=.+..+++.|+++.+.... .|.... +..+
T Consensus 392 -~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~~y 463 (835)
T KOG2047|consen 392 -EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LEYY 463 (835)
T ss_pred -HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hhhh
Confidence 1123344446666666666665543222 344444444455666667666555443 222211 1111
Q ss_pred hcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHH---HHHhcCChhhHHH
Q 040643 506 AGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLIS---GFAQSGYCEGALQ 582 (968)
Q Consensus 506 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~---~~~~~g~~~~A~~ 582 (968)
+....+ +..+..+..+|+..++.--.+|-++....+++++.+--+.|-..++. -+-.+..++++++
T Consensus 464 ------d~~~pv-----Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk 532 (835)
T KOG2047|consen 464 ------DNSEPV-----QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFK 532 (835)
T ss_pred ------cCCCcH-----HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHH
Confidence 111100 01111244566667777778889999999999887765555444433 1234566888998
Q ss_pred HHHHhhhcCCcCCcc-hHHHHHHHH---hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH----hcCCHHHHHHHH
Q 040643 583 VFSQMTQVGVQANLY-TFGSVVSAA---ANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA----KCGSIDDAKREF 654 (968)
Q Consensus 583 l~~~m~~~g~~p~~~-t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----k~g~~~~A~~~f 654 (968)
.+++-...=--|+.. .++..|.-+ .....++.++.+|+++++ |.+|.-. ..+--.|+ +-|-...|..++
T Consensus 533 ~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 533 AYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888765543334432 233333322 233479999999999999 6565422 22333344 458888999999
Q ss_pred hcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH---HHHcccCcHHHHHHHHHHhhhh
Q 040643 655 LEMPEK-----NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVL---SACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 655 ~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
++.... -...||..|.--+..=-.....++|++.++ .-||...-...+ ..=+..|.++.|+.++.--.+-
T Consensus 610 erat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 610 ERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 987622 245789888754443333456678888888 578765433333 2346789999999998765443
Q ss_pred cCCCCCcchHHHHHHHHhhcCC
Q 040643 727 YGLVPKPEHYACVVDLLGRAGC 748 (968)
Q Consensus 727 ~~i~p~~~~y~~lv~~l~r~G~ 748 (968)
..-.-+.+.|...=+-=.|.|+
T Consensus 688 ~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 688 CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred CCCcCChHHHHHHHHHHHhcCC
Confidence 2222336667777777788888
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-07 Score=94.46 Aligned_cols=195 Identities=17% Similarity=0.169 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHH
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLY 641 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 641 (968)
..+..+...|...|++++|.+.|++..+. .|+ +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHH
Confidence 34666666777777777777777766543 122 233344445555
Q ss_pred HhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHH
Q 040643 642 AKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGL 717 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 717 (968)
...|++++|.+.|++.. ..+...|..+...+...|++++|++.|++..+....|. ...+..+...+...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555443 22444555566666666666666666666665322222 234444555566666666666
Q ss_pred HHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 040643 718 RYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL 794 (968)
Q Consensus 718 ~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 794 (968)
.+|+...+. .|+ ...+..+..++...|++++|.+.+++. ...| +...|..+.......|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666655432 232 445556666666667777766666654 2222 3444445555566667777776666665554
Q ss_pred C
Q 040643 795 E 795 (968)
Q Consensus 795 ~ 795 (968)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-06 Score=92.17 Aligned_cols=342 Identities=12% Similarity=0.081 Sum_probs=209.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 464 TAMIVGFVQHGMFGEALELFEEMENQGIQSD-NIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 464 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
-...+-|.++|.+++|++.|.+.++ ..|| .+.|+..-.+|...|+|+.+.+--...++..+. -+-.+.--..++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHh
Confidence 3445668889999999999999887 5788 555666667778889998888776666654332 11222333445666
Q ss_pred cCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCCh--------hhHHHHHHHhhh-c--CCcCCcchHHHHHHHHhh---
Q 040643 543 CGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYC--------EGALQVFSQMTQ-V--GVQANLYTFGSVVSAAAN--- 608 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~--g~~p~~~t~~~ll~a~~~--- 608 (968)
.|++++|..- +|-.++..++..+.-. ..|.+-.++-.. . -+-|+.....+.+..+-.
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 6777766431 1112222222111111 111111222111 1 123333333333322211
Q ss_pred ----------hhhHHHHHHHH------------HHHHHh--C--CCC--C---------hhHHhHHhhHHHhcCCHHHHH
Q 040643 609 ----------LANIKQGKQVH------------AMIIKT--G--YDS--E---------TEASNSLITLYAKCGSIDDAK 651 (968)
Q Consensus 609 ----------~~~~~~a~~~~------------~~~~~~--g--~~~--~---------~~~~~~li~~y~k~g~~~~A~ 651 (968)
-..+..+.+.+ ..+.+. + ..+ + ......-...+.-+|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 00111111111 111111 0 011 1 111112223455688888898
Q ss_pred HHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 652 REFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 652 ~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
.-|+... .| ++..|--+...|++..+.++-.+.|.+..+ +.|. +-+|..-.....-.+++++|..=|++..
T Consensus 347 ~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai--- 421 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI--- 421 (606)
T ss_pred hhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh---
Confidence 8888766 23 333377788889999999999999999888 7774 6678877777777888999999998764
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------C
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE------D 798 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~ 798 (968)
.+.|. +..|.-+.-++.|.+++++++..|++. .++--+-+++-.....--+++++.|.+..+++++|+|. +
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 56776 666777778888999999999998887 23223566666777788889999999999999999999 8
Q ss_pred cchHHHHHHHHhh-cCCcchHHHHH
Q 040643 799 SATYVLLSNIYAA-AGKWDCRDQIR 822 (968)
Q Consensus 799 ~~~~~~l~~~y~~-~g~~~~a~~~~ 822 (968)
++++|.-+-+... .++.+.|..+.
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll 526 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLL 526 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHH
Confidence 8888776665554 13444555543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.1e-06 Score=88.74 Aligned_cols=204 Identities=10% Similarity=0.035 Sum_probs=123.8
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHH
Q 040643 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALIS 538 (968)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 538 (968)
++........+|.+.|++.+...++..|.+.|+-.|+..-.. ...+++.+++
T Consensus 186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------------------e~~a~~glL~ 237 (400)
T COG3071 186 HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------------------EQQAWEGLLQ 237 (400)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------HHHHHHHHHH
Confidence 444556666777777888888888888877775544321100 0111222222
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHH
Q 040643 539 LYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 615 (968)
-....+..+.-...+++.+.+ ++..-.+++.-+.+.|+.++|.++..+-.+.+..|+ ...+-.+.+.++.+.-
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l 313 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPL 313 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHH
Confidence 222222222233344444422 344455666777777888888888877777777666 2223345555655555
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDV 693 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 693 (968)
.+..+.-.+. .+.++..+.+|...|.|.+.+.+|.+.|+... .|+..+|+-+..+|.+.|+..+|.+.+++.+..-.
T Consensus 314 ~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 314 IKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 5555444442 23344677788888888888888888888655 67778888888888888888888888777664333
Q ss_pred CC
Q 040643 694 MP 695 (968)
Q Consensus 694 ~P 695 (968)
.|
T Consensus 393 ~~ 394 (400)
T COG3071 393 QP 394 (400)
T ss_pred CC
Confidence 33
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-07 Score=87.93 Aligned_cols=162 Identities=16% Similarity=0.132 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVD 741 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~ 741 (968)
....+.-+|.+.|+...|..-+++.++ ..|+. -++..+...|...|..+.|.+.|+... .+.|+ .+..+...-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345567788888888888888888888 67764 478888888888888888888888664 45666 666777778
Q ss_pred HHhhcCChHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcch
Q 040643 742 LLGRAGCLSRAREFTEQM---PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 817 (968)
-|+..|++++|...+++. |..|. +.+|..+.....+.|+.+.|+...++.++++|+++.....+++.....|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 888888999999888887 54444 66777776666779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 040643 818 RDQIRQIMKDRGV 830 (968)
Q Consensus 818 a~~~~~~m~~~g~ 830 (968)
|.-..+....+|.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9988887776653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.9e-05 Score=83.18 Aligned_cols=379 Identities=11% Similarity=0.095 Sum_probs=196.0
Q ss_pred cCCChhHHHHHHHHhhccccCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-ChhhHhHHHHHHHhcCChhHH
Q 040643 292 QCGYSDKALELFEKMQLDCLKPDCV-TVASLVSACASVGAFRTGEQLHSYAIKVGISK-DIIVEGSMLDLYVKCSDVETA 369 (968)
Q Consensus 292 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A 369 (968)
+.+..++|+..+. |..++.. +...-...|-++++++++..+|..+.+++.+. +...-..++..-. .-.+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 5566677776665 3333332 33344445667777777777777777665422 2222222222111 1111
Q ss_pred HHHHhhCCCCCcchHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChH
Q 040643 370 YKFFLTTETENVVLWNVML---VAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLN 446 (968)
Q Consensus 370 ~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~ 446 (968)
. +.+..+.....+|..+- ..+...|++.+|+++++...+-+.+- +.. ++.. -+.+-..+
T Consensus 162 ~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~~-~d~~-eEeie~el---- 223 (652)
T KOG2376|consen 162 Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LED-EDTN-EEEIEEEL---- 223 (652)
T ss_pred H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hcc-cccc-hhhHHHHH----
Confidence 1 34444443344444443 35667899999999988764321100 000 0000 00000000
Q ss_pred HHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH---HHhhcccchhhh------hhh
Q 040643 447 TAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAI---SACAGIQALNQG------RQI 517 (968)
Q Consensus 447 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll---~a~~~~~~~~~a------~~i 517 (968)
|+ .---|.-.+...|+.++|..++...++.. .+|........ .+...-.++-.+ +..
T Consensus 224 ------------~~-IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 224 ------------NP-IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred ------------HH-HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 00 11123445667799999999999888763 44443322221 222222221110 000
Q ss_pred hHh-------hhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC-cccHHHHHHHHHh--cCChhhHHHHHHHh
Q 040643 518 HAQ-------SYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD-NISWNGLISGFAQ--SGYCEGALQVFSQM 587 (968)
Q Consensus 518 ~~~-------~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d-~~~~~~li~~~~~--~g~~~~A~~l~~~m 587 (968)
+.. .....-......-+.++.+|. +..+.++++-...+... ...+.+++....+ .....+|.+++...
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF 367 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 000 000000111222345566554 55677777777776543 3344444443332 22456666666665
Q ss_pred hhcCCcCCc--chHHHHHHHHhhhhhHHHHHHHHH--------HHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcC
Q 040643 588 TQVGVQANL--YTFGSVVSAAANLANIKQGKQVHA--------MIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEM 657 (968)
Q Consensus 588 ~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 657 (968)
-+. .|.. +.....+......|+++.|..++. .+.+.+ ..+.+..+++.+|.+.++.+.|..++++.
T Consensus 368 ~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 368 ADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred hcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 543 3443 233344445567899999999888 344433 34456678889999999888888888765
Q ss_pred C------CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHH
Q 040643 658 P------EKNE----VSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYF 720 (968)
Q Consensus 658 ~------~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~ 720 (968)
. .+.. ..|.-....-.++|+.++|..+++++.+ ..| |.-+...++.|++.. +++.|..+-
T Consensus 444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 4 1121 2344444445677888888888888887 344 455677777777654 355555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-06 Score=85.95 Aligned_cols=249 Identities=14% Similarity=0.113 Sum_probs=182.7
Q ss_pred hcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHh-CCCCC--hhHHhHHhhHHHhcCCHH
Q 040643 573 QSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKT-GYDSE--TEASNSLITLYAKCGSID 648 (968)
Q Consensus 573 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~--~~~~~~li~~y~k~g~~~ 648 (968)
-+++.++|.++|-+|.+. .|.. .+-.++-+-+.+.|..+.|..+|.-+.++ ++..+ ....-.|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 356788888888888763 2222 23345556677788889999998887763 22222 233456777899999999
Q ss_pred HHHHHHhcCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHHHHHHHHcccCcHHHHHHHHH
Q 040643 649 DAKREFLEMPE-KN--EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFVGVLSACSHVGLVNEGLRYFE 721 (968)
Q Consensus 649 ~A~~~f~~~~~-~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~ 721 (968)
.|+.+|..+.+ ++ ....-.|+..|-...++++|++.-+++.+.|-.+..+ -|.-|........+++.|+..+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999875 32 3466778999999999999999999999977666543 25556667788889999999999
Q ss_pred HhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 722 SMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 722 ~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+..+ ..|+ +..--.+.++....|+++.|.+-++.. .-.|+ +.+...|..+|...|+.+.+.....+..+..|.
T Consensus 205 kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 7754 3565 445556779999999999999999887 55676 677888999999999999999999999999886
Q ss_pred CcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 798 DSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 798 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.....++---+....|.-+.+..+.+.++
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 55444443334444454433344455443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4e-05 Score=83.06 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=121.6
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCC--CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPE--KNEVSWNAMITGFS-QHGYALEAINLFEKMKKHDVMPNHV--TFVGVLSA 706 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a 706 (968)
..-++|+.+|. +..+.+.++-...+. |....=+.+..++. +.....+|.+++.+.-+ -.|+.. .....+.-
T Consensus 310 ~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 310 YRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHH
Confidence 34467777775 445677777777763 33333333333332 22357888888888776 466653 34445556
Q ss_pred HcccCcHHHHHHHHH--------HhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--------CCCCC-HHHHH
Q 040643 707 CSHVGLVNEGLRYFE--------SMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--------PIEPD-AMVWR 769 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~--------~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--------~~~p~-~~~~~ 769 (968)
....|+++.|.+++. +.. +.+.. +.+.+.++.++.+.+.-+-|-+++.+. +-++. ..+|.
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 778999999999988 442 22333 455678899999988755555544433 44444 45555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 770 TLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 770 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
-+.+.-..+|+-+.|....+.+++..|+|....+.|.-.|+... .+.|..+
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 55566667899999999999999999999999999999988753 3344443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.6e-07 Score=91.90 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=94.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChH
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~ 750 (968)
+-..++.++|+++++...+ ..|+.+ ...++...|.-.|+.|-|+.|++.+..- |+. +++.|..+.-.+.-++++|
T Consensus 300 ~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchh
Confidence 3333444444444444443 333322 2333333444444444444444443322 221 1233444444444444454
Q ss_pred HHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 751 RAREFTEQM---PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 751 eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
-++.-|++. .-.|+ +.+|-.|-.....-||+.+|.+.++.++.-+|+++.+|+.|+-+-...|+.++|..+....
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 444444443 12344 6789888888888999999999999999999999999999999999999999999998887
Q ss_pred HhCC
Q 040643 826 KDRG 829 (968)
Q Consensus 826 ~~~g 829 (968)
++..
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 7643
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=5e-05 Score=84.71 Aligned_cols=433 Identities=14% Similarity=0.100 Sum_probs=215.2
Q ss_pred hhhhCCCcchHHHhhhccCCCCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhh
Q 040643 54 IYLTSGDLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVN 133 (968)
Q Consensus 54 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 133 (968)
.|.--|+.+.|.+..+.+... ..|..|.+.+.+..+.+-|.-++..|.... .++
T Consensus 737 fyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aR------------------------gaR 790 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNAR------------------------GAR 790 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhh------------------------hHH
Confidence 456678888888777666543 469999999999999999888888775421 111
Q ss_pred HHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 040643 134 QIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPT 213 (968)
Q Consensus 134 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 213 (968)
.+ .+....|-+ .-....-.-...|-+++|..++.+-.+ |..|=.-|...|.|++|+++-+.=.+..++
T Consensus 791 Al-R~a~q~~~e----~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr-- 858 (1416)
T KOG3617|consen 791 AL-RRAQQNGEE----DEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR-- 858 (1416)
T ss_pred HH-HHHHhCCcc----hhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehh--
Confidence 11 111111110 000111112344555666666554433 223333455566677776665543332222
Q ss_pred hhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcC
Q 040643 214 PYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQC 293 (968)
Q Consensus 214 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 293 (968)
.||..-.+-+-..+|.+.|.+.++. .|. +-..+. .++. .++....+..+.+..+....|- -..+-..
T Consensus 859 -~Tyy~yA~~Lear~Di~~AleyyEK---~~~-hafev~-rmL~-----e~p~~~e~Yv~~~~d~~L~~WW--gqYlES~ 925 (1416)
T KOG3617|consen 859 -NTYYNYAKYLEARRDIEAALEYYEK---AGV-HAFEVF-RMLK-----EYPKQIEQYVRRKRDESLYSWW--GQYLESV 925 (1416)
T ss_pred -hhHHHHHHHHHhhccHHHHHHHHHh---cCC-hHHHHH-HHHH-----hChHHHHHHHHhccchHHHHHH--HHHHhcc
Confidence 2333333333344555555555442 111 000111 1111 1223333444444444333332 2233346
Q ss_pred CChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHH
Q 040643 294 GYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFF 373 (968)
Q Consensus 294 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 373 (968)
|..+.|+.+|...+. |-++++..+-.|..++|.++-.+ ..|...+-.|..+|-..|++.+|...|
T Consensus 926 GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred cchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777766543 34455555666777777666543 335566667778888888888888888
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCC-chhhhHHHHHhhCChHHHHHHH
Q 040643 374 LTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLG-ALSLGEQIHTQLGNLNTAQEIL 452 (968)
Q Consensus 374 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~~~~~~~~~~~~a~~~~ 452 (968)
.+. .++...|..+-.++.-++-. -+.-|- ...-.....+-+-..| ....|..+|.+.|.+.+|.++-
T Consensus 991 TrA-----qafsnAIRlcKEnd~~d~L~-nlal~s------~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 991 TRA-----QAFSNAIRLCKENDMKDRLA-NLALMS------GGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HHH-----HHHHHHHHHHHhcCHHHHHH-HHHhhc------CchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence 663 23334444333322222111 111110 0001111111122233 4556666666667776666653
Q ss_pred hhCC--------------CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhh
Q 040643 453 RRLP--------------EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518 (968)
Q Consensus 453 ~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 518 (968)
-+-. ..|+...+--.+.|+.+.++++|..++-..++ |...+..|...+ ..-..++-
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~a 1128 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFA 1128 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHH
Confidence 2222 12455556666777788888888888766554 344444444332 11222222
Q ss_pred Hhhhh-hcCCCC----chhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhh
Q 040643 519 AQSYI-SGFSDD----LSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEG 579 (968)
Q Consensus 519 ~~~~~-~g~~~~----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 579 (968)
+.|.- ..-.|+ ..+...+.+.+.+.|.+..|-+-|.+.-++ -.-+.++.+.|+.++
T Consensus 1129 E~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1129 ELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcce
Confidence 22211 111122 234455677788888888887777665432 112344555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00035 Score=80.32 Aligned_cols=175 Identities=14% Similarity=0.048 Sum_probs=102.2
Q ss_pred hhHHHHHHHHhCCCCCc-cchhHHHHHHHhcCCchHHHHHHhhC---CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 040643 132 VNQIHGLIISHGFGGSP-LISNPLIDLYAKNGFIDSAKKVFNNL---CFKDSVSWVAMISGFSQNGYEREAILLFCQMHI 207 (968)
Q Consensus 132 ~~~i~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 207 (968)
...+|..+....+.++. ..|..|-..|....+...|.+.|+.. ...|..+|......|++...++.|..+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 34455555555544443 45677777777777888888888865 344566788888889999999988887322211
Q ss_pred cC-CCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHH
Q 040643 208 LG-TVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSL 286 (968)
Q Consensus 208 ~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 286 (968)
.. ...-...|...--.+...+....+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-+..+|-.-
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 10 00000111111112334444444544444444433 34566777788888888888888888877665444433221
Q ss_pred ---HHHHHcCCChhHHHHHHHHhh
Q 040643 287 ---ISGLAQCGYSDKALELFEKMQ 307 (968)
Q Consensus 287 ---i~~~~~~g~~~~A~~l~~~m~ 307 (968)
...-+..|.+.+|+..+....
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 123356777777777776654
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.9e-06 Score=82.04 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 040643 464 TAMIVGFVQHGMFGEALELFEEM 486 (968)
Q Consensus 464 ~~li~~~~~~g~~~~A~~l~~~m 486 (968)
-.|+--|.+.++.++|..+.+++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred hhheeeecccccHHHHHHHHhhc
Confidence 34455567777788887777665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.9e-07 Score=98.24 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=115.6
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC----------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCh-
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP----------EKNEV-SWNAMITGFSQHGYALEAINLFEKMKKH---DVMPNH- 697 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~----------~~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~Pd~- 697 (968)
+++.|...|.+.|++++|...+++.. .|.+. ..+.++..|...+.+++|..++++..+. -..++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 34445556777777776666655432 22333 3566677778888888888888876542 123333
Q ss_pred ---HHHHHHHHHHcccCcHHHHHHHHHHhhhhc-----CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--------C
Q 040643 698 ---VTFVGVLSACSHVGLVNEGLRYFESMSTEY-----GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--------P 760 (968)
Q Consensus 698 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--------~ 760 (968)
-++..+...+.+.|.++||.++|++..+.. +..+. ..+++-|...|.+.++.++|.+++.+. |
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 368888888999999999999998875532 11222 556788888889999988888887764 5
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 040643 761 IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLE 793 (968)
Q Consensus 761 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 793 (968)
-.|+ ..++..|...|+..||+|.|+...++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5666 68899999999999999999999998774
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.9e-05 Score=83.01 Aligned_cols=498 Identities=14% Similarity=0.094 Sum_probs=264.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhc---ccCchHHH-------------------HHH----HHHHHHhc
Q 040643 191 QNGYEREAILLFCQMHILGTVPTPYAISSALSACT---KIELFEIG-------------------EQF----HGLIFKWG 244 (968)
Q Consensus 191 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a-------------------~~~----~~~~~~~g 244 (968)
..+.+++++.-+..-...+..-++.++..+.+++. ..++.++. ... +..+....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777776666666666555533 22333332 111 11122223
Q ss_pred CCCchhHHHHHHHHhhccCChhHHHHHHhhCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCccc-HHH
Q 040643 245 FSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ---RDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVT-VAS 320 (968)
Q Consensus 245 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 320 (968)
+.-|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+ +-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 566888899999999999999999999988653 2345799999999999998999998877654433354443 333
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHH
Q 040643 321 LVSACA-SVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSE 399 (968)
Q Consensus 321 ll~a~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 399 (968)
+-+.|. +.+.+++|...-..++... -.+++++... .|-.+.-+|...-.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~--------------~~~~~~l~~~-------------~~l~lGi~y~~~A~--- 448 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLL--------------GGQRSHLKPR-------------GYLFLGIAYGFQAR--- 448 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHh--------------hhhhhhhhhh-------------HHHHHHHHHHhHhh---
Confidence 333343 3455556555555544421 0111122111 11111111111000
Q ss_pred HHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHH
Q 040643 400 SFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEA 479 (968)
Q Consensus 400 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 479 (968)
.++ ++. -+.-...++
T Consensus 449 -------------~a~----------------------------------------------~~s------eR~~~h~ks 463 (799)
T KOG4162|consen 449 -------------QAN----------------------------------------------LKS------ERDALHKKS 463 (799)
T ss_pred -------------cCC----------------------------------------------ChH------HHHHHHHHH
Confidence 000 000 000011234
Q ss_pred HHHHHHHHhc-CCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC
Q 040643 480 LELFEEMENQ-GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA 558 (968)
Q Consensus 480 ~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 558 (968)
++.+++..+. +-.|+..-|.++- ++..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|..+.+...+
T Consensus 464 lqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4444443332 1233333332222 223344555555555555554455556666666666666666666666554321
Q ss_pred C---CcccHHHHHHHHHhcCChhhHHHHHHHhhhc--CCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhH
Q 040643 559 K---DNISWNGLISGFAQSGYCEGALQVFSQMTQV--GVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEA 633 (968)
Q Consensus 559 ~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 633 (968)
. |.+....-|..-..-++.++|+.....+..- ...|=..|.. .|....-+.-...... .....+.+
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~-q~~~a~s~ 612 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS-QPTDAIST 612 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc-cccccchh
Confidence 1 1111111111112245555555554444321 0000000000 0000000000000000 00001111
Q ss_pred Hh---HHhhHHHhcCCHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHH
Q 040643 634 SN---SLITLYAKCGSIDDAKREFLEMPEKN------EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGV 703 (968)
Q Consensus 634 ~~---~li~~y~k~g~~~~A~~~f~~~~~~d------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~l 703 (968)
+. +++..=.+.-..+.....|...+.|+ ...|......+...++.++|...+.+... +.|-. ..|...
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLR 690 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHh
Confidence 11 12211111111122222223333333 23566777788888888888877777766 66653 345555
Q ss_pred HHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHH--HHHhC-CCCCC-HHHHHHHHHHHHhc
Q 040643 704 LSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRARE--FTEQM-PIEPD-AMVWRTLLSACRVH 778 (968)
Q Consensus 704 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~--~~~~m-~~~p~-~~~~~~ll~~~~~~ 778 (968)
...+...|..+||.+.|... .-+.|+ +..-..+..+|.+.|+-.-|.. +...+ .+.|+ ...|..|....+..
T Consensus 691 G~~~~~~~~~~EA~~af~~A---l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVA---LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 56677788999999988855 356777 6677788889999998777766 77776 67776 88999999999999
Q ss_pred CChhHHHHHHHHHHccCCCCc
Q 040643 779 KNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~ 799 (968)
|+.+.|...+..+++|++.+|
T Consensus 768 Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cchHHHHHHHHHHHhhccCCC
Confidence 999999999999999998876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.3e-06 Score=91.26 Aligned_cols=201 Identities=10% Similarity=-0.047 Sum_probs=135.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCC
Q 040643 601 SVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGY 677 (968)
Q Consensus 601 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~ 677 (968)
..-..+...|+.++|...+..+++.. +.+...++.+...|...|++++|.+.|++.. .| +..+|..+...+...|+
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33334555566666666666665543 3456788889999999999999999999875 34 56788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHH--HHH
Q 040643 678 ALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA--REF 755 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA--~~~ 755 (968)
+++|++.|++..+ ..|+.......+..+...++.++|...|...... ..|+... ..++..+ .|+++++ .+.
T Consensus 148 ~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~-~~~~~~~--lg~~~~~~~~~~ 220 (296)
T PRK11189 148 YELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWG-WNIVEFY--LGKISEETLMER 220 (296)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccH-HHHHHHH--ccCCCHHHHHHH
Confidence 9999999999998 6786542222222345577899999999765432 2333222 2344333 4554433 322
Q ss_pred HHh-CC----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC-CcchHHHHHHHH
Q 040643 756 TEQ-MP----IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE-DSATYVLLSNIY 809 (968)
Q Consensus 756 ~~~-m~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y 809 (968)
+.+ .. ..|+ ...|..|...+...|+.+.|...++++++++|. ....-..+..+.
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 222 11 1222 467888888899999999999999999999974 444444444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00034 Score=76.95 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=86.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHH
Q 040643 328 VGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIF 404 (968)
Q Consensus 328 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 404 (968)
.+++..+....+.+++ +++....+.....-.....|+-++|......-.. ++-++|..+.-.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4455555555555554 2222222222222223445666666666655443 34567877777777777788888888
Q ss_pred HHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHh---hCCCCCceeHHHHHHHHHhcCChhHHHH
Q 040643 405 KQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILR---RLPEDDVVSWTAMIVGFVQHGMFGEALE 481 (968)
Q Consensus 405 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~ 481 (968)
...... .||..... ...--+..++++++-....-. +..+....+|..+..++.-.|+...|..
T Consensus 99 ~nAl~~--~~dN~qil------------rDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 99 RNALKI--EKDNLQIL------------RDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHHHhc--CCCcHHHH------------HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776543 23322110 011111222233332222222 2223456789999999999999999999
Q ss_pred HHHHHHhcC-CCCChhhHH
Q 040643 482 LFEEMENQG-IQSDNIGFS 499 (968)
Q Consensus 482 l~~~m~~~g-~~pd~~t~~ 499 (968)
+.++..+.. -.|+...+.
T Consensus 165 il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred HHHHHHHhhccCCCHHHHH
Confidence 999987764 246655554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-05 Score=76.92 Aligned_cols=193 Identities=17% Similarity=0.106 Sum_probs=130.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 040643 605 AAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEA 681 (968)
Q Consensus 605 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A 681 (968)
.+.+.|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+-|++.. ..+-...|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3344444444444444444432 3345566677777888888888888887654 34556677777777888888888
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 682 INLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 682 ~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
...|++....-.-|. ..||..+.-.-.++|+.+.|..+|+...+ +.|+ ......|.+.....|++-+|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 888888876433333 35777777777778888888888876543 3555 556677778888888888888888776
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 760 --PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 760 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
...+++....-.+.--+..||.+.+.+.-.++-.+-|.....
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 344666655555555677888888888888888888866543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.5e-06 Score=84.05 Aligned_cols=226 Identities=14% Similarity=0.067 Sum_probs=181.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHhCC--CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHH-HHHHHhhh
Q 040643 533 GNALISLYARCGRIQEAYLVFNKID--AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGS-VVSAAANL 609 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~ 609 (968)
-+-+..+|.+.|.+.+|.+.|+.-. .+-+.||--|-..|.+-.+++.|+.+|.+-.+. .|-.+||.. ..+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3678899999999999999998654 346678888999999999999999999987754 677777753 44566778
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
+..+.+.++++.+.+.. +.++....++...|.-.++.+-|.+.+.++. -.+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 89999999999988854 4566666777778888899999999998866 4577888888888888999999999999
Q ss_pred HHHHCCCCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC
Q 040643 687 KMKKHDVMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIE 762 (968)
Q Consensus 687 ~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~ 762 (968)
+.+..--.|+.. .|..+.....-.|++.-|.+.|+-.... .|+ .+.|+.+.-+-.|.|++++|..+++.. ...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 998876667743 5777888888899999999999866432 333 677888888888999999999999876 344
Q ss_pred CC
Q 040643 763 PD 764 (968)
Q Consensus 763 p~ 764 (968)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 44
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00025 Score=81.44 Aligned_cols=564 Identities=13% Similarity=0.034 Sum_probs=295.3
Q ss_pred HHHHHHHHHHhcCCCc-hhHHHHHHHHhhccCChhHHHHHHhhCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHhhc
Q 040643 233 GEQFHGLIFKWGFSSE-TFVCNALVTLYSRSGNLTSAEQIFSKMQQR---DGVTYNSLISGLAQCGYSDKALELFEKMQL 308 (968)
Q Consensus 233 a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 308 (968)
+..++..+....+.++ ...|..|-..|....+...|.+.|+..-+- |+.+|-.....|++...++.|..+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3344444444444444 346788888888888889999999887653 667899999999999999999998332211
Q ss_pred cc-cCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHH
Q 040643 309 DC-LKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVM 387 (968)
Q Consensus 309 ~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 387 (968)
.. ...-...|..+--.+...++...+..-++...+.. +.|...|..|..+|..+|.+..|.++|++...-++.+|-..
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 10 00001111122223345556666666666666654 55778899999999999999999999988776554443322
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhcC------CCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCC--
Q 040643 388 ---LVAYGQLNDLSESFQIFKQMQTEG------LTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLP-- 456 (968)
Q Consensus 388 ---i~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-- 456 (968)
...-+-.|.+++|++.+......- ..--..++..+...+...|-...+. ..++++.+.|.-..
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav------d~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV------DFFEKSIESFIVSLIH 707 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHH
Confidence 223456799999999888765431 0000001111100000000000000 11111111111100
Q ss_pred --CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch---h---hhhhhhHhhhhhcCCC
Q 040643 457 --EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQAL---N---QGRQIHAQSYISGFSD 528 (968)
Q Consensus 457 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~g~~~ 528 (968)
..+...|-.+ ..|..+|-...- . .|+......+..-.-..+.. + .|-+.. .....+..
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAI 773 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhh
Confidence 1112222211 123333333220 0 22222222222212222222 1 010000 11111122
Q ss_pred CchhhhhHHHHHHH----cC----CHHHHHHHHHhC---CCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc
Q 040643 529 DLSIGNALISLYAR----CG----RIQEAYLVFNKI---DAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY 597 (968)
Q Consensus 529 ~~~~~~~Li~~y~k----~g----~~~~A~~~f~~m---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 597 (968)
+...|-.|...|.+ +| +...|...+... ...+...||.|.-. ...|.+.-|.--|-+-.... +-+..
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~ 851 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHC 851 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchh
Confidence 23333334333332 22 223444444432 23456667766544 44455555544444433221 22344
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--------CCCHHHHHHHH
Q 040643 598 TFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--------EKNEVSWNAMI 669 (968)
Q Consensus 598 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--------~~d~~~~~~li 669 (968)
+|..+--.|....+.+.|.+.+..+.... +.+...|-...-.--..|++-++..+|..-. -++..-|-.-.
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 55555555666677777777777665532 1222222222222334566666666665411 23555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC--------CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHH--
Q 040643 670 TGFSQHGYALEAINLFEKMKKH--------DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYAC-- 738 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~--------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~-- 738 (968)
.-..++|+.++-+..-++.-.. +-.|+ ...|...++...|.+.++++.+...+...-...+-+...|+.
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5556677766655443333211 12454 567888888888888888888776655332222333444443
Q ss_pred --HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh---cC
Q 040643 739 --VVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA---AG 813 (968)
Q Consensus 739 --lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---~g 813 (968)
...++...|.++.|..-....+.+-|..+.++-++. .-.|+++.+...+++++.+--++..--++++.+... +|
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~ 1089 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLAR 1089 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcc
Confidence 334555678888887777777777777776666665 456789999999999998876666655666655443 34
Q ss_pred CcchHHHH
Q 040643 814 KWDCRDQI 821 (968)
Q Consensus 814 ~~~~a~~~ 821 (968)
.-+.|...
T Consensus 1090 ~k~~A~~l 1097 (1238)
T KOG1127|consen 1090 QKNDAQFL 1097 (1238)
T ss_pred cchHHHHH
Confidence 44555543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00078 Score=74.26 Aligned_cols=234 Identities=14% Similarity=0.134 Sum_probs=134.9
Q ss_pred cCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC---CCcccHHHHHHHHHcCCChhHHHHHH
Q 040643 227 IELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ---RDGVTYNSLISGLAQCGYSDKALELF 303 (968)
Q Consensus 227 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 303 (968)
.+.+..+..+.+.+++ +++....+....---+...|+-++|......-.. ++.++|..+--.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3445555555555555 3222233332222223445777777766654433 35567887777777777888888888
Q ss_pred HHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhh---CCCCC
Q 040643 304 EKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLT---TETEN 380 (968)
Q Consensus 304 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~---~~~~~ 380 (968)
...... .||.- .++.-|--.-++.++++.....-.. .....
T Consensus 99 ~nAl~~--~~dN~----------------------------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 99 RNALKI--EKDNL----------------------------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHhc--CCCcH----------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 776543 33332 2222222222222333222222211 12234
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCC-
Q 040643 381 VVLWNVMLVAYGQLNDLSESFQIFKQMQTEG-LTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPED- 458 (968)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 458 (968)
...|.....++.-.|+...|..++++..+.. -.|+...+.-...-+.+ .+++...|..+.|.+......+.
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~-------n~i~~E~g~~q~ale~L~~~e~~i 215 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ-------NQILIEAGSLQKALEHLLDNEKQI 215 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-------HHHHHHcccHHHHHHHHHhhhhHH
Confidence 5679999999999999999999999988765 35555555443322221 23444446666666655544321
Q ss_pred --CceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhh
Q 040643 459 --DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACA 506 (968)
Q Consensus 459 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 506 (968)
....--+....+.+.+++++|..++..++.. .||..-|.-.+..|.
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHH
Confidence 1222334567788899999999999999885 688887766665554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0018 Score=72.78 Aligned_cols=300 Identities=18% Similarity=0.167 Sum_probs=173.6
Q ss_pred CccchhHHHH--HHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhc-CC--------CCChh
Q 040643 147 SPLISNPLID--LYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHIL-GT--------VPTPY 215 (968)
Q Consensus 147 ~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p~~~ 215 (968)
|..+..++++ .|..-|++|.|.+-...+. ..+.|..|.+.+.+..+.+-|.-.+-.|... |. .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4455566664 4677899999988877764 3457999999999888888777766666431 11 122 1
Q ss_pred hHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCC-cccHHHHHHHHHcCC
Q 040643 216 AISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRD-GVTYNSLISGLAQCG 294 (968)
Q Consensus 216 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g 294 (968)
+=..+.-.....|.+++|+.++....+. ..|=..|-..|.+++|.++-+.-..-. -.||..-...+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 1122222234678889999998887763 345567888899999998865432111 124555555566677
Q ss_pred ChhHHHHHHHHhh----------ccc---------cCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhH
Q 040643 295 YSDKALELFEKMQ----------LDC---------LKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGS 355 (968)
Q Consensus 295 ~~~~A~~l~~~m~----------~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 355 (968)
+.+.|++.|++-. ... -.-|...|..--.-.-+.|+.+.|..++..+.. |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 8888888887632 111 011222222222223344555555554443322 334
Q ss_pred HHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhh
Q 040643 356 MLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLG 435 (968)
Q Consensus 356 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 435 (968)
++...+-.|+.++|-++-++-. |....-.+...|-..|++.+|..+|.+.+ +|...|+.|...+--+..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 4555555677777777766533 44555677888888999999999998865 466666666554433332
Q ss_pred HHHHHhh--CChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHH
Q 040643 436 EQIHTQL--GNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALEL 482 (968)
Q Consensus 436 ~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 482 (968)
..+-... .++-.|.+.|+.... -..--+-.|-+.|.+.+|+++
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~----~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGG----YAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcch----hhhHHHHHHHhhcchHHHHHH
Confidence 2222111 222233333433321 111223445667777777665
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-06 Score=79.92 Aligned_cols=122 Identities=9% Similarity=-0.013 Sum_probs=92.3
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 040643 683 NLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-P 760 (968)
Q Consensus 683 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~ 760 (968)
.+|++.++ +.|+. +.....++...|++++|..+|+... .+.|+ ...|..+..++.+.|++++|.+.+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45566665 56664 4455667777888888888887764 33554 667777888888888888888888877 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 761 IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 761 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..|+ +..|..+..++...|+.+.|...+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 5564 67777777778889999999999999999999999999888876543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=82.54 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=106.2
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP--EKN-E---VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TF 700 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~ 700 (968)
...+-.+...|.+.|++++|...|+++. .|+ . ..|..+...|...|++++|+..|+++.+ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 4444555556666677777766666554 221 1 3455666666666777777777777666 444322 33
Q ss_pred HHHHHHHccc--------CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 040643 701 VGVLSACSHV--------GLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLL 772 (968)
Q Consensus 701 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll 772 (968)
..+..++... |+.++|.+.|+.+.+. .|+..... .++.+.+....... .....+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~---~a~~~~~~~~~~~~-----------~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAP---DAKKRMDYLRNRLA-----------GKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHH---HHHHHHHHHHHHHH-----------HHHHHHH
Confidence 3334444433 5566666666665443 33321111 11111111111100 0112344
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCC---cchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPED---SATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
..+...|+.+.|....+++++..|++ +..+..++.+|...|++++|....+.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678899999999999999997765 478999999999999999999987777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.8e-07 Score=61.15 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=26.2
Q ss_pred cCCCchhHHHHHHHHhhccCChhHHHHHHhhCC
Q 040643 244 GFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ 276 (968)
Q Consensus 244 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 276 (968)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.3e-06 Score=86.00 Aligned_cols=246 Identities=11% Similarity=0.037 Sum_probs=121.8
Q ss_pred HHHcCCHHHHHHHHHhCCCC----CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHH
Q 040643 540 YARCGRIQEAYLVFNKIDAK----DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 540 y~k~g~~~~A~~~f~~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 615 (968)
+.-.|.+..+..-.+ .... +.....-+..+|...|+++.++. +..... .|.......+...+....+-+..
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 1111 12233445566666676654442 222222 44444443333333322222222
Q ss_pred HHHHHHHHHhCCC-CChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040643 616 KQVHAMIIKTGYD-SETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVM 694 (968)
Q Consensus 616 ~~~~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 694 (968)
..-+......... .+..+......+|...|++++|.+++... .+....-..+..|.+.++++.|.+.++.|.+ +.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 2222111111111 22222223334455666666666666554 3344444455666666666666666666665 33
Q ss_pred CChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 040643 695 PNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLL 772 (968)
Q Consensus 695 Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll 772 (968)
.|.+ ..-+..| .|.+..-...+.+|.-+|+++ .+.+++.+.+.+.
T Consensus 162 eD~~-l~qLa~a--------------------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 162 EDSI-LTQLAEA--------------------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp CCHH-HHHHHHH--------------------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred CcHH-HHHHHHH--------------------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3322 2222222 222222223455555555555 2345566666666
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCc-chHHHHHHHHHh
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKW-DCRDQIRQIMKD 827 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~ 827 (968)
.++...|+++.|+...+.+++.+|.|+.+...+.-+....|+. +.+.+....++.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 6677778888888888888888888888888888888888888 445667776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00036 Score=72.41 Aligned_cols=287 Identities=12% Similarity=0.062 Sum_probs=161.1
Q ss_pred cCChhhHHHHHHHhhhcCCcC-CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHH-hHHhhHHHhcCCHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQA-NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEAS-NSLITLYAKCGSIDDAK 651 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~k~g~~~~A~ 651 (968)
.++...|..++-.+.....-| |......+...+...|+..++...|+...-. .|+.... ....-.++..|+.++-.
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 455555555555444433333 3344455555666677777777766665442 2221111 01111234455555555
Q ss_pred HHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 652 REFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 652 ~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
.+-..+.. ....-|-.-........+++.|+.+-++.++ +.|+.+ .+..-..++...|.+++|.-.|+...
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq--- 361 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ--- 361 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHH---
Confidence 54444332 1233344444445556777778887777777 666654 56666667777888888888887664
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHH--HHh-cCChhHHHHHHHHHHccCCCCcch
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSA--CRV-HKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~--~~~-~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.+.|. .+.|.-++..|...|++.||.-+-+.. -+..++.+. +|+++ |.- -.--|.|+..+++.+.++|.-.++
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L-tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL-TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh-hhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 45554 777888888888888888876554332 112222222 34432 322 122467777788888888887777
Q ss_pred HHHHHHHHhhcCCcchHHHH-HHHHHhCCCccCCcccEEEEcCEE-----------EEEecCCCCCcchHHHHHHHHHHH
Q 040643 802 YVLLSNIYAAAGKWDCRDQI-RQIMKDRGVKKEPGQSWIEVKNSI-----------HAFFVGDRLHPLADKIYDYLGNLN 869 (968)
Q Consensus 802 ~~~l~~~y~~~g~~~~a~~~-~~~m~~~g~~k~~g~s~i~~~~~~-----------~~f~~~d~~h~~~~~i~~~l~~l~ 869 (968)
-+.++.++...|+.+++..+ ++.++ -.|.|+.-.+-|+| --|...=+..|+.+.-.+-|+.|+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~-----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI-----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh-----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 78888888888888877775 33332 23443321111110 011122234577777777788887
Q ss_pred HHHH
Q 040643 870 RRVA 873 (968)
Q Consensus 870 ~~~~ 873 (968)
++++
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 7776
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.36 E-value=2e-05 Score=82.69 Aligned_cols=212 Identities=13% Similarity=0.119 Sum_probs=118.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhc-CChhhHHHHHHHhhhcCCcCCcchH-HHHHHHHhhhhhHH
Q 040643 536 LISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQS-GYCEGALQVFSQMTQVGVQANLYTF-GSVVSAAANLANIK 613 (968)
Q Consensus 536 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~ 613 (968)
+..+|...|+.+.+..-...-..+.......+ ..|... ++-+.++.-+++.......++..++ ......+...|+++
T Consensus 41 ~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~l-a~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 41 QYRSYIALGQYDSVLSEIKKSSSPELQAVRLL-AEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHH-HHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHcCChhHHHHHhccCCChhHHHHHHH-HHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 45556666666655444433333333333333 333333 4455666666555544433222222 22223455678888
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--CCHHHHHHHHHHH----HhcCCHHHHHHHHHH
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--KNEVSWNAMITGF----SQHGYALEAINLFEK 687 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d~~~~~~li~~~----~~~g~~~~A~~l~~~ 687 (968)
.|.+++... .+.......|..|.+.++++.|.+.++.|.+ .|.+ ...+..++ .-.+.+.+|..+|++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 888775421 3556667788999999999999999999874 3332 22233322 223468999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh-HHHHHHHHhC
Q 040643 688 MKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL-SRAREFTEQM 759 (968)
Q Consensus 688 m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~-~eA~~~~~~m 759 (968)
+.+. ..|+..+.+++..++.+.|++++|.+.+.+.. ...|+ +++...++-+..-.|+. +.+.+++.++
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8764 45677788888888888999999988877653 23343 33344444444444444 3344444444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00015 Score=81.87 Aligned_cols=281 Identities=13% Similarity=0.104 Sum_probs=165.9
Q ss_pred HHHHHcCCHHHHHHHHHhCCCC--CcccH-HHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHh----h--
Q 040643 538 SLYARCGRIQEAYLVFNKIDAK--DNISW-NGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAA----N-- 608 (968)
Q Consensus 538 ~~y~k~g~~~~A~~~f~~m~~~--d~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~-- 608 (968)
..+...|+.++|.+.++.-... |..+| ......+.+.|+.++|..+++.+.+. .|+...|-..+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 4456778888888887664432 44443 34456677778888888888888766 577777766666554 1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHH-HHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSID-DAKREFLEMPEKNE-VSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~-~A~~~f~~~~~~d~-~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
....+.-.+++..+...- |.......+.-.+..-..+. .+...+..+..+.+ .+++.+-.-|.......-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123555566666554432 11111111111111111222 22333333344443 345555555554444444455555
Q ss_pred HHHHC----C----------CCCCh--HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh
Q 040643 687 KMKKH----D----------VMPNH--VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL 749 (968)
Q Consensus 687 ~m~~~----g----------~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~ 749 (968)
..... | -.|.. .|+..+...+.+.|++++|+++.+... ..+|+ ++.|..-..+|-++|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCH
Confidence 54432 1 11222 244555666778899999999888664 44787 78888888888899999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHccCC--CC-------cchHHHHHHHHhhcCCcchH
Q 040643 750 SRAREFTEQM-PIEPDAMVWRTLL-SACRVHKNMEIGEYAANHLLELEP--ED-------SATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 750 ~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~l~p--~~-------~~~~~~l~~~y~~~g~~~~a 818 (968)
++|.+.++.. .+.+...-.++-. ..+-..|+++.|+..+.....-+- .. .-..+--+..|.+.|+|..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9998888887 5555544444433 345677888888888887766552 11 11223457788999999888
Q ss_pred HHHHHHH
Q 040643 819 DQIRQIM 825 (968)
Q Consensus 819 ~~~~~~m 825 (968)
.+-....
T Consensus 325 Lk~~~~v 331 (517)
T PF12569_consen 325 LKRFHAV 331 (517)
T ss_pred HHHHHHH
Confidence 7754443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00014 Score=80.69 Aligned_cols=288 Identities=11% Similarity=-0.050 Sum_probs=158.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCC---CCCccc---HHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc-hHHHHHHHH
Q 040643 534 NALISLYARCGRIQEAYLVFNKID---AKDNIS---WNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY-TFGSVVSAA 606 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~ 606 (968)
..+...|...|+.+++.+.+.... ..+... .......+...|++++|.+++++..+. .|+.. .+.. ...+
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~ 86 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHH
Confidence 334445555566665544444322 112111 222233456678888888888877665 34433 2221 1112
Q ss_pred hh----hhhHHHHHHHHHHHHHhCCCC-ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH
Q 040643 607 AN----LANIKQGKQVHAMIIKTGYDS-ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA 678 (968)
Q Consensus 607 ~~----~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~ 678 (968)
.. .+....+.+.... .....| .......+...+...|++++|.+.+++.. +.+...+..+...|...|+.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 22 2333444433332 111122 23344455667788888888888888765 33566778888888888888
Q ss_pred HHHHHHHHHHHHCCC-CCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-ch--HHHHHHHHhhcCChHHH
Q 040643 679 LEAINLFEKMKKHDV-MPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-EH--YACVVDLLGRAGCLSRA 752 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~-~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~--y~~lv~~l~r~G~~~eA 752 (968)
++|+..+++.....- .|+.. .+..+...+...|++++|..+++.........+.. +. ...+...+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 888888888876321 12321 34456677788888888888888764321111111 11 11223333444433333
Q ss_pred HHH---HHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC---------CCcchHHHHHHHHhhcCCcc
Q 040643 753 REF---TEQM-PIEP---DAMVWRTLLSACRVHKNMEIGEYAANHLLELEP---------EDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 753 ~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p---------~~~~~~~~l~~~y~~~g~~~ 816 (968)
... ...- +..| ..........++...|+.+.|....+.+....- ......++.+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 322 1111 1111 122223445556677888888888777655321 24566788999999999999
Q ss_pred hHHHHHHHHH
Q 040643 817 CRDQIRQIMK 826 (968)
Q Consensus 817 ~a~~~~~~m~ 826 (968)
+|.+......
T Consensus 325 ~A~~~L~~al 334 (355)
T cd05804 325 TALELLGPVR 334 (355)
T ss_pred HHHHHHHHHH
Confidence 9988644443
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0062 Score=65.91 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=133.0
Q ss_pred hhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC-ChhHHhHHhhHHHhcCCHHHHHHHHh
Q 040643 577 CEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDS-ETEASNSLITLYAKCGSIDDAKREFL 655 (968)
Q Consensus 577 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f~ 655 (968)
.+.....++++...-..--..+|...++...+..-++.|+.+|..+.+.+..+ +++++++++.-|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455566665553322234567788888888888999999999999877766 8899999999777 478889999998
Q ss_pred cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHcccCcHHHHHHHHHHhhhhcC--
Q 040643 656 EMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH--VTFVGVLSACSHVGLVNEGLRYFESMSTEYG-- 728 (968)
Q Consensus 656 ~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 728 (968)
.-. ..++.--+..+.-+..-|+-..|..+|++.+..++.||. ..|...|.-=+.-|+.....++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 654 224445566777778888889999999999998888874 4788999988899999999988888877776
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHH
Q 040643 729 LVPKPEHYACVVDLLGRAGCLSRAR 753 (968)
Q Consensus 729 i~p~~~~y~~lv~~l~r~G~~~eA~ 753 (968)
..|...+-..++|.|+=.+....-.
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccH
Confidence 6666667777788777666554333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-06 Score=58.38 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 692 DVMPNHVTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 692 g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
|+.||.+||+.|+.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00057 Score=75.73 Aligned_cols=265 Identities=14% Similarity=0.066 Sum_probs=171.6
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcC-CcCCcchHHHH-HHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHh---
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVG-VQANLYTFGSV-VSAAANLANIKQGKQVHAMIIKTGYDSETEASN--- 635 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--- 635 (968)
...|..+...+...|+.+++.+.+.+..+.. ..++......+ ...+...|+.+++..++..+.+.. +.+...++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456667777777788888776666655432 12232222222 223456789999999999888763 34444444
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccC
Q 040643 636 SLITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVG 711 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g 711 (968)
.+.......|..+.+.+.++.... | +...+..+...+...|++++|++.+++..+ ..|+. ..+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcC
Confidence 222333345667777777765332 2 234555666788999999999999999999 66764 56777888999999
Q ss_pred cHHHHHHHHHHhhhhcCCCCCc--chHHHHHHHHhhcCChHHHHHHHHhC-CCCC--CHHHHH----HHHHHHHhcCChh
Q 040643 712 LVNEGLRYFESMSTEYGLVPKP--EHYACVVDLLGRAGCLSRAREFTEQM-PIEP--DAMVWR----TLLSACRVHKNME 782 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~--~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p--~~~~~~----~ll~~~~~~g~~~ 782 (968)
++++|..+++.........|.. ..|..+...+...|++++|.+.+++. ...| ...... .++.-....|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999876543222332 23557889999999999999999986 2233 222221 3344456667665
Q ss_pred HHHHH---HHHHHccCCC--CcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 783 IGEYA---ANHLLELEPE--DSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 783 ~a~~~---~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.+.+. +.....-.|. ....-...+.++...|++++|.+..+.++..
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 55554 3332221122 1222235677888999999999988887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00035 Score=70.69 Aligned_cols=207 Identities=10% Similarity=0.113 Sum_probs=120.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH---HhhcccchhhhhhhhHhhhhhcCCCCchhh-hhHHHHHH
Q 040643 466 MIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAIS---ACAGIQALNQGRQIHAQSYISGFSDDLSIG-NALISLYA 541 (968)
Q Consensus 466 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~---a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~y~ 541 (968)
+-..+...|++..|+.-|...++. |...|.++.+ .|...|....|.+=+..+++. .||.... ---...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 455667788889999988887663 3333433332 334444444444444444443 2332111 11123455
Q ss_pred HcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 040643 542 RCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAM 621 (968)
Q Consensus 542 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 621 (968)
|.|.++.|..-|+.+.+.+.. -+.-..++.+ +.+.+++. .....+..+...|+...+......
T Consensus 118 K~Gele~A~~DF~~vl~~~~s-~~~~~eaqsk-------l~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPS-NGLVLEAQSK-------LALIQEHW---------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCC-cchhHHHHHH-------HHhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 677777777777666543221 0001111111 11111111 122233344556777777777777
Q ss_pred HHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 040643 622 IIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698 (968)
Q Consensus 622 ~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 698 (968)
+++.. +.|...+..-.+.|...|.+..|+.-+.... ..|....--+-..+.+-|+.+.++....+.++ +.||+-
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 76643 4577778888888889999988877665443 55666666777778888999999998888888 788864
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00011 Score=78.12 Aligned_cols=168 Identities=11% Similarity=0.086 Sum_probs=106.9
Q ss_pred HHHhcC-CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCc
Q 040643 640 LYAKCG-SIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA--LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGL 712 (968)
Q Consensus 640 ~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~ 712 (968)
++.+.| .+++|...++++. .++..+|+-....+.+.|.. ++++.+++++++ ..|+ ..+|.....++.+.|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhh
Confidence 333444 4566666666544 33455566554444444542 556667777766 5564 4466666666667777
Q ss_pred HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc---CC----hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC---
Q 040643 713 VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA---GC----LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK--- 779 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~---G~----~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g--- 779 (968)
+++++++++.+.+. .|+ ...|.-...++.+. |. ++++.++++++ ...|+ ...|..+.+.+..++
T Consensus 158 ~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 158 WEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred HHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 77777777766543 233 33344333333333 22 24677777444 66776 889999988887743
Q ss_pred -ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 780 -NMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 780 -~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
+...+......+++.+|.++.++..|+.+|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 446688888999999999999999999999864
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.3e-05 Score=82.22 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=133.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCC-----c---CCcch
Q 040643 530 LSIGNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGV-----Q---ANLYT 598 (968)
Q Consensus 530 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~---p~~~t 598 (968)
...|.-|...-+..++-..|...+.+.. ..|....-+|.-.|...|.-.+|++.++.-..... . ++..+
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~ 398 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF 398 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc
Confidence 3444445555555555555665555443 33555666677778888888888888777644321 0 01110
Q ss_pred HHHHHHHHhhhhhHHHHHHHH-HHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHh
Q 040643 599 FGSVVSAAANLANIKQGKQVH-AMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQ 674 (968)
Q Consensus 599 ~~~ll~a~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~ 674 (968)
-.. ........+....++| +.....+...|+.+...|.-.|--.|.+++|...|+... +| |...||-|...++.
T Consensus 399 ~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 399 ENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN 476 (579)
T ss_pred cCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence 000 1222333444455554 444456656888899999999999999999999999876 44 78899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
..+.++|++.|.+.++ ++|+.+ ....|.-.|...|.++||.++|-+.
T Consensus 477 ~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred CcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999 999966 6677888999999999999988654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0001 Score=86.54 Aligned_cols=124 Identities=15% Similarity=0.072 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 040643 696 NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLL 772 (968)
Q Consensus 696 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll 772 (968)
+...+..|..+..+.|..++|..+++... .+.|+ ......++..|.+.++++||+..+++. +..|+ ......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34455566666666666666666666553 34565 444555666677777777777777665 56666 33334444
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
.++...|..+.|..++++++..+|+++.+++.+++.+-..|+.++|....
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44566777777777777777777777777777777777777777776643
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.6e-05 Score=84.46 Aligned_cols=209 Identities=15% Similarity=0.158 Sum_probs=155.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040643 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLF 685 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 685 (968)
.|++.+|.-.++..++.. +-+...|--|...-+..++=..|+..+.+.. ..|.....+|...|...|.-.+|++.+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344555555555555432 3345566666666666666666666666654 346777788888888888888898888
Q ss_pred HHHHHCCCCCChH---------HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 040643 686 EKMKKHDVMPNHV---------TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFT 756 (968)
Q Consensus 686 ~~m~~~g~~Pd~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~ 756 (968)
+.-+.. +|-.+ .+..- +...+......-.++|-.+....+.+++++.+.+|.-+|.-.|.+++|.+.|
T Consensus 377 ~~Wi~~--~p~y~~l~~a~~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 377 DKWIRN--KPKYVHLVSAGENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHh--CccchhccccCccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 887652 22110 00000 1223334455667778777777777788899999999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 757 EQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 757 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
+.. ..+|+ ...|+-|-.....-...+.|..++.++++|.|.-.-..+.|+-.|...|-++||.+.
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 987 77886 889998888888888899999999999999999999999999999999999999884
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0003 Score=79.54 Aligned_cols=283 Identities=13% Similarity=0.086 Sum_probs=153.4
Q ss_pred HHHhhCChHHHHHHHhhCCC--CCcee-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcc------
Q 040643 438 IHTQLGNLNTAQEILRRLPE--DDVVS-WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGI------ 508 (968)
Q Consensus 438 ~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------ 508 (968)
++...|+.++|.+.+..... .|..+ .......+.+.|+.++|...|+.+++. .||...|-..+..|...
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccc
Confidence 34455788888887766442 34333 445677888899999999999999885 58888776666665511
Q ss_pred cchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCH-HHHHHHHHhCCCCCcc-cHHHHHHHHHhcCChhhHHHHHHH
Q 040643 509 QALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRI-QEAYLVFNKIDAKDNI-SWNGLISGFAQSGYCEGALQVFSQ 586 (968)
Q Consensus 509 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~m~~~d~~-~~~~li~~~~~~g~~~~A~~l~~~ 586 (968)
.+.+.-.+++..+...-+..+..-. +.-.+..-..+ ..+...+..+..+.+. +++.+-.-|......+-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~r--l~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRR--LPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhH--hhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 2345555666655444322111111 10001110111 1222333333444443 355555555544444434444444
Q ss_pred hhhc----CC----------cCCc--chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHH
Q 040643 587 MTQV----GV----------QANL--YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDA 650 (968)
Q Consensus 587 m~~~----g~----------~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 650 (968)
.... +- .|.. .++..+-..+...|+.++|.++.+.++++. +..+..|..-...|-+.|++++|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3321 11 1222 123333444556677777777777666653 22355666666667777777777
Q ss_pred HHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH------H--HHHHHHHHcccCcHHHHHHH
Q 040643 651 KREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV------T--FVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 651 ~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~------t--~~~ll~a~~~~g~~~~a~~~ 719 (968)
.+..+.... .|-..-+-.+..+.+.|+.++|.+++......+..|-.. . .+-...+|.+.|++..|++.
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777666553 244444555566667777777777777766655444221 1 12334466667777777666
Q ss_pred HHHhhh
Q 040643 720 FESMST 725 (968)
Q Consensus 720 ~~~m~~ 725 (968)
|....+
T Consensus 328 ~~~v~k 333 (517)
T PF12569_consen 328 FHAVLK 333 (517)
T ss_pred HHHHHH
Confidence 665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.3e-05 Score=73.66 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=84.3
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCC--hhH
Q 040643 710 VGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSA-CRVHKN--MEI 783 (968)
Q Consensus 710 ~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~--~~~ 783 (968)
.+..+++...++...+ ..|+ .+.|..+..+|...|++++|.+.+++. .+.|+ ..+|..+..+ +...|+ .+.
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4555566655554433 2444 666777777777788888887777776 55664 6666666665 356666 488
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 784 GEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
|..+.+++++++|+++.++..|+..|...|++++|....+.+.+.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888889999999999999999999999999999998887777553
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.3e-05 Score=85.80 Aligned_cols=230 Identities=15% Similarity=0.119 Sum_probs=148.3
Q ss_pred cCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHH
Q 040643 525 GFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVS 604 (968)
Q Consensus 525 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 604 (968)
+++|-..+...+...+.++|-..+|..+|++. ..|--.|.+|...|+..+|..+..+-.+. +||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 45566666778899999999999999999976 46888899999999999998888777652 555555555444
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040643 605 AAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 605 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 684 (968)
..-+..- +++|.++++....+--.+|+-. ...+++++++.+.
T Consensus 466 v~~d~s~-----------------------------------yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 466 VLHDPSL-----------------------------------YEKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred hccChHH-----------------------------------HHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 4433333 4444444444332211122111 1225666777777
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 040643 685 FEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PI 761 (968)
Q Consensus 685 ~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~ 761 (968)
|+.-.+ +.|= .-||..+..+..+.++++.+.+.|..-. ...|+ .+.|+.+.-+|.+.|+..+|...+++. ..
T Consensus 508 le~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 508 LERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 766665 5554 3466666666667777777777776553 33555 556666666666666666666666555 22
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 762 -EPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 762 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
.-+..+|...+-....-|+.+.|.+++.+++++.-.....-++
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence 2346678888888888888888888888888775443333333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.024 Score=71.52 Aligned_cols=325 Identities=10% Similarity=-0.020 Sum_probs=154.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCC------CC--chhhhhHHHHHH
Q 040643 470 FVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFS------DD--LSIGNALISLYA 541 (968)
Q Consensus 470 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~------~~--~~~~~~Li~~y~ 541 (968)
....|+++.+..+++.+.......+..........+...++++.+......+...--. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345666665555555422111111111222223334556666666666554332110 01 111122334455
Q ss_pred HcCCHHHHHHHHHhCCC----CCc----ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc---C--CcchHHHHHHHHhh
Q 040643 542 RCGRIQEAYLVFNKIDA----KDN----ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ---A--NLYTFGSVVSAAAN 608 (968)
Q Consensus 542 k~g~~~~A~~~f~~m~~----~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p--~~~t~~~ll~a~~~ 608 (968)
..|++++|...+++... .+. ..++.+...+...|++++|...+.+.....-. + -..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67777777776665321 121 23344555566677777777777666532111 1 11223333445566
Q ss_pred hhhHHHHHHHHHHHHH----hCCCC---ChhHHhHHhhHHHhcCCHHHHHHHHhcCCC------C--CHHHHHHHHHHHH
Q 040643 609 LANIKQGKQVHAMIIK----TGYDS---ETEASNSLITLYAKCGSIDDAKREFLEMPE------K--NEVSWNAMITGFS 673 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~----~g~~~---~~~~~~~li~~y~k~g~~~~A~~~f~~~~~------~--d~~~~~~li~~~~ 673 (968)
.|+++.|...+..... .+... ....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 6777777776655443 12111 122233444455556777777666665421 1 1223444555666
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCChHHHH-----HHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcch-----HHHHHHH
Q 040643 674 QHGYALEAINLFEKMKKHDV-MPNHVTFV-----GVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEH-----YACVVDL 742 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~-~Pd~~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~-----y~~lv~~ 742 (968)
..|+.++|.+.+++.....- ......+. ..+..+...|..+++.+++...... .+...+ +..+..+
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP---EFANNHFLQGQWRNIARA 700 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC---CCccchhHHHHHHHHHHH
Confidence 67777777777666643110 00111010 0112333466677777666554221 111111 2344555
Q ss_pred HhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 743 LGRAGCLSRAREFTEQM-------PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+.+.|+.++|...+++. +..++ ..+...+..++...|+.+.|....++++++...
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 66667777766666554 11122 223333344456666777777777766666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0011 Score=71.57 Aligned_cols=212 Identities=13% Similarity=0.111 Sum_probs=137.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHH----------HHHHHHH
Q 040643 601 SVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEV----------SWNAMIT 670 (968)
Q Consensus 601 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~----------~~~~li~ 670 (968)
.+.++.-+..++..+.+-+...+... .++.-++.....|...|...+....-+...+..-. +..-+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444444555666666666665543 45555566666777777666665554443322111 1222444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc--chHHHHHHHHhhcCC
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP--EHYACVVDLLGRAGC 748 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~--~~y~~lv~~l~r~G~ 748 (968)
+|.+.++++.|+..|++.+..-..||..+ .....+++.+..+.. --+.|.. +--.+ ...+.+.|+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~k-Gne~Fk~gd 373 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREK-GNEAFKKGD 373 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHH-HHHHHhccC
Confidence 66667788888888888776555554321 222334444443322 1234442 11222 566778899
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 749 LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 749 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+.+|..-+.++ ...|+ +..|.....++-..|++..|..-+++.++++|+....|..-+-++....+|++|.+....-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887 55676 67777777777888999999999999999999999999999999999999999988776544
Q ss_pred h
Q 040643 827 D 827 (968)
Q Consensus 827 ~ 827 (968)
+
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 3
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0018 Score=70.17 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=124.9
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPE--KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLV 713 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~ 713 (968)
+...|.+.++.+.|...|.+... ++... ..+....+++++..+...- +.|+.. -.-.-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 45578888999999999888552 22111 1233445666666666555 667643 244447788899999
Q ss_pred HHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 714 NEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 714 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
.+|...+.++.+. .|+ ...|+.-.-+|.+.|.+.+|++-.+.. ...|+ ...|.--..+.+...+++.|..++++
T Consensus 375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998754 465 788999999999999999988766554 55666 44554555556777899999999999
Q ss_pred HHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 791 LLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 791 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
.++++|++...-..+...+.....-+...++
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~~~~~~~ee~ 482 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQRGDETPEET 482 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHhhcCCCHHHH
Confidence 9999999999988888888775444444443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.1e-06 Score=56.16 Aligned_cols=35 Identities=31% Similarity=0.646 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH 697 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~ 697 (968)
++||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00016 Score=85.84 Aligned_cols=216 Identities=11% Similarity=0.093 Sum_probs=178.0
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMPEK--------NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV- 698 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~- 698 (968)
+.+...|-..+......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+ --|+.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq---ycd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ---YCDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH---hcchHH
Confidence 445667888888888999999999999987621 245899999999999999999999999997 33544
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM----PIEPDAMVWRTLLSA 774 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~~~~~~~ll~~ 774 (968)
.|..|+.-|...+.+++|-++|+.|.++++ -....|...++.|.|..+-++|.++++++ |-.-......-.+.-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 588999999999999999999999999988 55677899999999999999999998876 333345666666667
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCC
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRL 854 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 854 (968)
-.++||.|+|..+++-++.-.|.....|..+..+-.+.|.-+.++.+.++.-..++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~----------------------- 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS----------------------- 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----------------------
Confidence 789999999999999999999999999999999888999999999998887765542
Q ss_pred CcchHHHHHHHHHHHHH
Q 040643 855 HPLADKIYDYLGNLNRR 871 (968)
Q Consensus 855 h~~~~~i~~~l~~l~~~ 871 (968)
--+++..|.+|-+.+++
T Consensus 1667 ~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred hhHhHHHHHHHHHHHHh
Confidence 12466777777666554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=72.43 Aligned_cols=154 Identities=12% Similarity=0.147 Sum_probs=107.5
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGL 717 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 717 (968)
-.|.+.|+++....-.+.+..|. ..|...++.++++..+++.++ ..|+ ...|..+...+...|++++|.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777666544433222111 011235566777777777777 5665 446777777888888888888
Q ss_pred HHHHHhhhhcCCCCC-cchHHHHHHHH-hhcCC--hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040643 718 RYFESMSTEYGLVPK-PEHYACVVDLL-GRAGC--LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHL 791 (968)
Q Consensus 718 ~~~~~m~~~~~i~p~-~~~y~~lv~~l-~r~G~--~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 791 (968)
..|+... .+.|+ ...+..+..++ .+.|+ .++|.+++++. ...|+ ..++..|...+...|+++.|....+++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888664 44565 67777777754 67777 48888888887 56665 677777777789999999999999999
Q ss_pred HccCCCCcchHHHH
Q 040643 792 LELEPEDSATYVLL 805 (968)
Q Consensus 792 ~~l~p~~~~~~~~l 805 (968)
++++|.++.-+-.+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99999887666544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0011 Score=83.75 Aligned_cols=355 Identities=10% Similarity=-0.010 Sum_probs=212.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH----HhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAIS----ACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~----a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
...+...|++.+|+....... |......++. .....|..+........+-......+..........+..
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAG------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCC------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 344566677777666554431 2111112221 222334555544444433211122233333445556678
Q ss_pred cCCHHHHHHHHHhCC----CCC---c---c--cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc----chHHHHHHHH
Q 040643 543 CGRIQEAYLVFNKID----AKD---N---I--SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL----YTFGSVVSAA 606 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~----~~d---~---~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~ 606 (968)
.|+.++|...++... ..+ . . ....+...+...|++++|...+++....--..+. .....+-..+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 899999988876542 111 1 1 1112234456789999999999987653111111 1233344456
Q ss_pred hhhhhHHHHHHHHHHHHHhCC---CC--ChhHHhHHhhHHHhcCCHHHHHHHHhcCCC-------C----CHHHHHHHHH
Q 040643 607 ANLANIKQGKQVHAMIIKTGY---DS--ETEASNSLITLYAKCGSIDDAKREFLEMPE-------K----NEVSWNAMIT 670 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-------~----d~~~~~~li~ 670 (968)
...|+++.|...+..+....- .+ .......+...+...|++++|...+++... + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 678999999998877765211 11 123445566778889999999998776431 1 1233455566
Q ss_pred HHHhcCCHHHHHHHHHHHHHC--CCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchH-----HHHHH
Q 040643 671 GFSQHGYALEAINLFEKMKKH--DVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHY-----ACVVD 741 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~--g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y-----~~lv~ 741 (968)
.+...|++++|...+++.... ...|. ..++..+.......|+.++|...+...............+ .....
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 677789999999999987653 11232 2234445667788999999999998875432211111111 11224
Q ss_pred HHhhcCChHHHHHHHHhCCC--CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHccCC------CCcchHHHHHHHH
Q 040643 742 LLGRAGCLSRAREFTEQMPI--EPDA----MVWRTLLSACRVHKNMEIGEYAANHLLELEP------EDSATYVLLSNIY 809 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m~~--~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y 809 (968)
.+...|+.++|.+++.+... .+.. ..+..+..+....|+.+.|...++++++... +....+..++.+|
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45668999999999877621 1111 1234555567788999999999999888632 2334678899999
Q ss_pred hhcCCcchHHHHHHHHHh
Q 040643 810 AAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 810 ~~~g~~~~a~~~~~~m~~ 827 (968)
...|+.++|.......-+
T Consensus 742 ~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999886544433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00013 Score=75.25 Aligned_cols=180 Identities=14% Similarity=0.041 Sum_probs=124.6
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-C-ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CH---HHHHH
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYD-S-ETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NE---VSWNA 667 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~---~~~~~ 667 (968)
...+......+...|+.+.|...+..+++..-. + ....+..+...|.+.|++++|...|+++. .| +. ..|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 345666677788999999999999998875421 1 12456778889999999999999999886 23 22 25666
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHH
Q 040643 668 MITGFSQH--------GYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYAC 738 (968)
Q Consensus 668 li~~~~~~--------g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~ 738 (968)
+..++... |+.++|++.|+++.+ ..|+.. ....+..... ... .. ..+...
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~---------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RL---------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HH---------HHHHHH
Confidence 66666654 789999999999998 577753 2222211100 000 00 011235
Q ss_pred HHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 040643 739 VVDLLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
+.+.+.+.|++++|...+++. |-.|. ...|..+..++...|+.+.|....+.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667788889999988887775 43443 56788888888889999999888777766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.8e-06 Score=55.22 Aligned_cols=35 Identities=31% Similarity=0.727 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL 596 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 596 (968)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.9e-05 Score=71.75 Aligned_cols=97 Identities=13% Similarity=-0.046 Sum_probs=85.7
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 729 LVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 729 i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
+.|+ ++......+...|++++|.+.++.. ...|+ ..+|..+..+|...|+++.|...++++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3555 4667888999999999999999987 56664 889999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHHHHHh
Q 040643 807 NIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 807 ~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.+|...|++++|.........
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999997665543
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.1e-05 Score=67.96 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=96.1
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
.+..-.+...+...|++++|..+++-. -+.|. ..-|-.|...|+..|+++.|..+..+++.++|+|+.+|..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 555566777888899999999999887 56675 7889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Q 040643 811 AAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRV 872 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 872 (968)
..|+.++|.+-.+..... ++ .||+-.+|.++-+.....|
T Consensus 115 ~lG~~~~A~~aF~~Ai~~---------------------~~--~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI---------------------CG--EVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HcCCHHHHHHHHHHHHHH---------------------hc--cChhHHHHHHHHHHHHHHh
Confidence 999999999976654332 11 4577777777666555444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00052 Score=73.46 Aligned_cols=110 Identities=21% Similarity=0.220 Sum_probs=54.1
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGE 785 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 785 (968)
..|..++|+..++.+... .|+ +......++++.++|+.++|.+.++++ ...|+ ...|-++..++...|+...|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 344455555555544322 333 233333445555555555555555554 34444 444445555555555555555
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 786 YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 786 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
...+....-+|+|+..|.+|+..|...|+-.++...
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 555555555555555555555554444444444433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0005 Score=80.80 Aligned_cols=136 Identities=9% Similarity=0.043 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
++..+-.|.....+.|..++|..+++...+ +.||.. .+..+..++.+.+.+++|+...++.. ...|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 355566666677777777777777777777 677754 56666777777777777777777653 34565 666667
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
+..+|...|++++|.++|++. .-.|+ ..+|-++..+....|+.+.|..+++++++...+-+-.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 777777777777777777776 23344 6677777777777777777777777777776544433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00038 Score=77.69 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=124.9
Q ss_pred CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040643 626 GYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLS 705 (968)
Q Consensus 626 g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 705 (968)
+++|-...-..+.+.+.++|-+.+|..+|++. ..|.-.|-+|...|+..+|..+..+-.+ -+||+.-|..++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555556667788888888888888888874 5677788888888888888888887777 5778888888888
Q ss_pred HHcccCcHHHHHHHHHHhhhh-------------------------cCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 706 ACSHVGLVNEGLRYFESMSTE-------------------------YGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~-------------------------~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
..-..-.+++|+++++..... ..+.|- ..+|-...-+..+.++.+.|.+.|...
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 777777777777777654222 011111 223333333344455555555555444
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 760 -PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 760 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..+|| ...|++|-.++-++|+..+|-+..+.+++-+-++...+....-+-.+.|.|++|.+....|.+
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 45565 566666666666666666666666666666655555444444445566666666666555543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0011 Score=78.88 Aligned_cols=226 Identities=16% Similarity=0.217 Sum_probs=153.7
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-----chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHh
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-----YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASN 635 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 635 (968)
.+.|-..|+-..+.++.++|.+++++.+.. +.+.. ..|.++++.--.-|.-+...++|+.+.+.. ....+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 456777777777778888888877776543 22211 234444444444455566667777766642 2345778
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHH-HHcc
Q 040643 636 SLITLYAKCGSIDDAKREFLEMPEK---NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLS-ACSH 709 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~-a~~~ 709 (968)
.|...|.+.+..++|.++++.|.++ ....|...+..+.++.+.+.|.+++.+.++ .-|- ++-|.+... .-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhh
Confidence 8888888888888888888888743 566888888888888888888888888887 4554 554444332 3456
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHH
Q 040643 710 VGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM---PIEPD--AMVWRTLLSACRVHKNMEIG 784 (968)
Q Consensus 710 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a 784 (968)
.|+-+.|+.+|+.....| +-..+.|+..+|+=.+.|..+.+..+|++. .+.|. -..+.-.|..-..|||-+..
T Consensus 1613 ~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 788888888888776653 233667888888888888888888888876 34443 45666667777777776666
Q ss_pred HHHHHHHHc
Q 040643 785 EYAANHLLE 793 (968)
Q Consensus 785 ~~~~~~~~~ 793 (968)
+.+-.++.|
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 666555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00081 Score=79.70 Aligned_cols=148 Identities=9% Similarity=0.140 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
.+-.+..+|.+.|+.++|...++++++ +.|+ ....+.+...++.. ++++|.+++.+....
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------
Confidence 455566666666666666666666666 4454 33556666666666 666666666655332
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC---------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 743 LGRAGCLSRAREFTEQM-PIEPD---------------------AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m-~~~p~---------------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
+...+++.++.+++.++ ...|+ ..+|.-|-.-++..++++.+..+.+++++.+|.|..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 33333444555544444 22222 333444446678888999999999999999999999
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhCCCcc
Q 040643 801 TYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKK 832 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k 832 (968)
+..-|+..|. +++.+-..+-+.++-.|+..
T Consensus 259 a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~ 288 (906)
T PRK14720 259 AREELIRFYK--EKYKDHSLLEDYLKMSDIGN 288 (906)
T ss_pred hHHHHHHHHH--HHccCcchHHHHHHHhcccc
Confidence 9999998888 77777666666666666543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.097 Score=60.61 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=89.1
Q ss_pred HHHHHHHhhhhhHHHHHH---HHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC----CHHHHHHHHHHH
Q 040643 600 GSVVSAAANLANIKQGKQ---VHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK----NEVSWNAMITGF 672 (968)
Q Consensus 600 ~~ll~a~~~~~~~~~a~~---~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----d~~~~~~li~~~ 672 (968)
+.++..|-+.++.....+ +++...... +.|..+--.||..|+--|-+..|.++|+.+.-+ |...|- +..-+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 356667776666553332 333222211 334455567889999999999999999998744 333332 23344
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHcccCcHHHHH---HHHHHhhhhcCCCCCcchHHHHHHHHhhcC
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPNH--VTFVGVLSACSHVGLVNEGL---RYFESMSTEYGLVPKPEHYACVVDLLGRAG 747 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~---~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G 747 (968)
...|++..+...+++..+ +--+. .|--.+..||.+ |.+.+-. .+-+.|.... -.-....=+...+.+..++
T Consensus 518 ~t~g~~~~~s~~~~~~lk--fy~~~~kE~~eyI~~AYr~-g~ySkI~em~~fr~rL~~S~-q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK--FYDSSLKETPEYIALAYRR-GAYSKIPEMLAFRDRLMHSL-QKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HhcccchhHHHHHHHHHH--HHhhhhhhhHHHHHHHHHc-CchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC
Confidence 556677777666666554 11111 122233334433 3333322 2222221110 0000112234567888999
Q ss_pred ChHHHHHHHHhCCCCC--CHHHHHHH
Q 040643 748 CLSRAREFTEQMPIEP--DAMVWRTL 771 (968)
Q Consensus 748 ~~~eA~~~~~~m~~~p--~~~~~~~l 771 (968)
+.++-...+..|.++| |..-|..|
T Consensus 594 ~~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 594 RGTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred cHHHHHHHHhccccCcchhhcccccc
Confidence 9999999998886554 34555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.003 Score=64.17 Aligned_cols=249 Identities=15% Similarity=0.135 Sum_probs=177.9
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccC
Q 040643 636 SLITLYAKCGSIDDAKREFLEMPEKNEVSWNAM---ITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVG 711 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g 711 (968)
-|...+.-.|++.+|..-|....+-|+..|-++ ...|...|+..-|+.-|.+.++ ++||-. .-.--...+.++|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 345556667889999999988887777766665 4568888999999999999998 899854 3444455677899
Q ss_pred cHHHHHHHHHHhhhhcCCCCC----cchHHH------------HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPK----PEHYAC------------VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLS 773 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~----~~~y~~------------lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~ 773 (968)
.+++|..=|+..... .|+ .+++.- ++.-+.-.|+...|.+++..+ .+.|= +..+..-..
T Consensus 121 ele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 999999999877543 442 233322 223345578999999999987 56664 444444445
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH-HHHHHHhCCCccCCcccEEEEcCEEEEEecCC
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ-IRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGD 852 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 852 (968)
++...|++..|+.-.+.+-+|..+|...++-+|.+|+..|..+++.. +|+-+|- |
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl------------------------d 253 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL------------------------D 253 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc------------------------C
Confidence 56678899999999999999999999999999999999999998876 5665542 3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCCCC-CCEEEecccccCC
Q 040643 853 RLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDS-MPILVIKNLRVCN 929 (968)
Q Consensus 853 ~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~-~~~~~~kn~r~c~ 929 (968)
..|...---|.+|..+.+.+..+-- -+ |+ ....|-|+-.=.++.+.|. ++||+----++|.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~---------~i--e~-----~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQ---------AI--EE-----KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH---------HH--hh-----hhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 4566666667777777666543210 00 11 1235667777778888777 8898876666664
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0007 Score=66.78 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=102.1
Q ss_pred CCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 040643 693 VMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRT 770 (968)
Q Consensus 693 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ 770 (968)
..|+......+-.++...|+-+.+..+.......+ .-+.+.....+....+.|++.+|...+++. +-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 45643322666667778888888887777653321 112334444788888999999999998887 45567888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 771 LLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 771 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
+..+|-..|+.+.|...+.+++++.|.++.++..|+-.|.-.|+.++|..+.......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 8888999999999999999999999999999999999999999999998876655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0065 Score=60.58 Aligned_cols=189 Identities=11% Similarity=0.128 Sum_probs=105.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC--CCcchHHH-HHHHHHhc
Q 040643 318 VASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET--ENVVLWNV-MLVAYGQL 394 (968)
Q Consensus 318 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~ 394 (968)
|.+++..+.+..++..+.+++..-.+.. +.+..-.+.|..+|-...++..|-..++++.. |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444444445555555544443332 12333444455556666666666666655542 22222221 12345566
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHH----hhCChHHHHHHHhhCC-CCCceeHHHHHHH
Q 040643 395 NDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHT----QLGNLNTAQEILRRLP-EDDVVSWTAMIVG 469 (968)
Q Consensus 395 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~-~~~~~~~~~li~~ 469 (968)
+.+..|+.+...|.+. |+. . +...++.. .-+++..++.+.++.+ +.+..+.+.....
T Consensus 92 ~i~ADALrV~~~~~D~---~~L------~---------~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PAL------H---------SRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL 153 (459)
T ss_pred cccHHHHHHHHHhcCC---HHH------H---------HHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence 6677777776666542 100 0 00011111 1156666677777777 3555666666667
Q ss_pred HHhcCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCC
Q 040643 470 FVQHGMFGEALELFEEMENQ-GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFS 527 (968)
Q Consensus 470 ~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 527 (968)
..+.|++++|++-|+...+- |..| ...|+..+.- -+.++.+.|....++++++|+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 77889999999999987664 4444 4556555543 3567788888888888887764
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00033 Score=76.01 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=99.0
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRV 777 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 777 (968)
..+|+..+...+.+++|..+|+++.+. .|+ ....|+.++...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 455677777888899999999988655 354 4566788888888888999888877 3344 45655555566889
Q ss_pred cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 778 HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.++.+.|..+++++.++.|++-.+|..|+.+|...|+|++|.-..+.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999887766
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.7e-05 Score=52.12 Aligned_cols=33 Identities=30% Similarity=0.578 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMP 695 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 695 (968)
.+||++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=70.77 Aligned_cols=169 Identities=12% Similarity=0.128 Sum_probs=126.5
Q ss_pred hHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCc-
Q 040643 639 TLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHG-YALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGL- 712 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~- 712 (968)
..+.+.+..++|..+.+.+. .| +..+|+..-..+...| +.++++..++++.+ ..|+. .+|......+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCch
Confidence 33455677888888888776 33 5567887777777777 67999999999998 56754 356655555555665
Q ss_pred -HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CCh----
Q 040643 713 -VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH---KNM---- 781 (968)
Q Consensus 713 -~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~---g~~---- 781 (968)
.+++..+++.+. .+.|. ...|.-..-++.+.|++++|++.++++ ...|+ ..+|.......... |..
T Consensus 123 ~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 367788888775 34666 566777788889999999999999998 45554 78888776665543 222
Q ss_pred hHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 782 EIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
+......+++++++|+|..+|..+..+|...
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 4567778899999999999999999999874
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00078 Score=66.46 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=130.4
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~ 705 (968)
|..+ .-+-..|--.|+-+++..+..... ..|....+..+....+.|++.+|+..|.+... ..| |..+++.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 3444 555566667788787777777644 34666777788889999999999999999988 455 5778888889
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhH
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIE--PDAMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~ 783 (968)
+|-+.|++++|..-|.+..+-.+-+ ...++.|.-.|.-.|+++.|..++.+.-.. .|..+-..|.-+-...|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999988776543333 456788888888899999999998887332 357777888888888999999
Q ss_pred HHHHHHHHHccCCCCc-chHHHHHHHHhhcCCc
Q 040643 784 GEYAANHLLELEPEDS-ATYVLLSNIYAAAGKW 815 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~-~~~~~l~~~y~~~g~~ 815 (968)
|+.++.+-+..+ .. .....|.++-...|-|
T Consensus 221 A~~i~~~e~~~~--~~~~~~~~l~~~~~~~~~~ 251 (257)
T COG5010 221 AEDIAVQELLSE--QAANNVAALRAAASQSGAW 251 (257)
T ss_pred HHhhccccccch--hHhhHHHHHHHhhcccchh
Confidence 988887744432 22 2233455555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0027 Score=68.21 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH-HHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVL-SACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVD 741 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~ 741 (968)
.|--..-.+...|..++|+..+++++. -.||..-|..+. ..+...+++++|.+.|+.+.. ..|+ ....-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 333344445566788888888888777 577766655544 467778888888888887754 3566 333445667
Q ss_pred HHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 742 LLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
+|...|+..||...+++. ..+-|+..|..|..+|...||...+..+ .+..|+-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 888888888888888876 2334588999999999999987776654 345788899999999
Q ss_pred HHHHHHHhCC
Q 040643 820 QIRQIMKDRG 829 (968)
Q Consensus 820 ~~~~~m~~~g 829 (968)
...+..+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9877776654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=67.76 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=72.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
......++..+...|++++|.+.++.. ...|+ ...|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556666777777777777777765 44454 6667677777778888888888888888899999999999999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 040643 811 AAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~ 827 (968)
..|++++|.+..+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999887665543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=4.2e-05 Score=51.18 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=31.4
Q ss_pred eehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 040643 179 SVSWVAMISGFSQNGYEREAILLFCQMHILGTVP 212 (968)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 212 (968)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.17 Score=58.71 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=58.5
Q ss_pred hhhHHHHHHHcCCHH---HHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 040643 533 GNALISLYARCGRIQ---EAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAA 606 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~---~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 606 (968)
.+.|+++|-+.++.. +|.-+++.-... |..+--.+|..|.--|-+..|.++|..|.-..++-|...|.. ++-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHH
Confidence 467888888888755 445555544433 333444578888888999999999998888888877766632 3344
Q ss_pred hhhhhHHHHHHHHHHHH
Q 040643 607 ANLANIKQGKQVHAMII 623 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~ 623 (968)
...|....+...+....
T Consensus 518 ~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHL 534 (932)
T ss_pred HhcccchhHHHHHHHHH
Confidence 45555555555544433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00052 Score=74.55 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=99.1
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGL 712 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~ 712 (968)
..+|+..+...++++.|.++|+++.+.++..+-.|+..+...++-.+|+++.++.++ ..|+. .....-...|...|+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 345566666778899999999998866666666688888888889999999999887 45644 344444556888899
Q ss_pred HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCC
Q 040643 713 VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEPD 764 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~ 764 (968)
++.|+++.+++. .+.|+ -++|..|+..|...|++++|+-.++.+|+.|.
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 999999998886 45777 67889999999999999999999999987654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.1e-05 Score=49.08 Aligned_cols=31 Identities=29% Similarity=0.735 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDV 693 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 693 (968)
++||+||++|++.|+.++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.14 Score=55.96 Aligned_cols=128 Identities=9% Similarity=0.130 Sum_probs=91.8
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC-CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA-NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
..+|-..+..-.+..-.+.|..+|.+..+.+..+ ..+..++++.-+ ..++.+.|..+++.=++. +..++......++
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 3466677777777777777888888888777777 444444555433 356677777777665543 3445555677888
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMPEK------NEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
.+...++-+.|+.+|++.... ....|..||.--..-|+...++++-+++..
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888888888887633 346899999988899999999888888765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00092 Score=62.04 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=82.7
Q ss_pred HHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 040643 684 LFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP-KPEHYACVVDLLGRAGCLSRAREFTEQM-P 760 (968)
Q Consensus 684 l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~ 760 (968)
+|++.+. ..|+.. ....+...+...|++++|.+.|+..... .| +...+..+...+.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 566543 4556666777788888888888776543 34 3666777888888888888888887776 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 761 IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 761 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
..|+ ...|..+...+...|+.+.|....+++++++|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4454 67777777778888999999999999999999876543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.7e-05 Score=48.10 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=28.0
Q ss_pred ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 040643 180 VSWVAMISGFSQNGYEREAILLFCQMHILGT 210 (968)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 210 (968)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00081 Score=73.50 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=50.8
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
.+.+.|++++|.++++++ ...|+ ...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344556666666666555 34443 4555555555666666666666666666666666666666666666666666666
Q ss_pred HHHHHH
Q 040643 820 QIRQIM 825 (968)
Q Consensus 820 ~~~~~m 825 (968)
...+..
T Consensus 91 ~~~~~a 96 (356)
T PLN03088 91 AALEKG 96 (356)
T ss_pred HHHHHH
Confidence 654433
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0043 Score=70.81 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC
Q 040643 658 PEKNEVSWNAMITGFSQH--G---YALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP 731 (968)
Q Consensus 658 ~~~d~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 731 (968)
...|...|...+.|.... + ...+|+.+|++.++ ..||.. .+..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 345778888888775432 2 37789999999999 889854 444443322110 01111
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHh---CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 732 KPEHYACVVDLLGRAGCLSRAREFTEQ---MP-IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 732 ~~~~y~~lv~~l~r~G~~~eA~~~~~~---m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
.. .+++.+|.+..++ ++ ...++.++.++.-.....|+.+.|...++++++++| +..+|+.++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 10 0112222222222 12 122344555554444556777777777777777777 4567777777
Q ss_pred HHhhcCCcchHHHHHH
Q 040643 808 IYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 808 ~y~~~g~~~~a~~~~~ 823 (968)
+|...|+.++|.+..+
T Consensus 462 ~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 462 VYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 7777777777766543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00017 Score=60.33 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=54.2
Q ss_pred CChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 747 GCLSRAREFTEQM----PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 747 G~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
|++++|..+++++ |..|+...|-.+..++...|+.+.|..+.++ .+.+|.+.....+++.+|...|+|++|.++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5566666666655 3223455666667777778888888888877 7778877777888899999999999998875
Q ss_pred H
Q 040643 823 Q 823 (968)
Q Consensus 823 ~ 823 (968)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 5
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0033 Score=59.01 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=26.6
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
.+...|+++.|....+.+ .-.|-.+..+.+++++|...|++++|....+
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444444444331 2222344456677777777777777776544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00011 Score=48.65 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=30.4
Q ss_pred HHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 788 ANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 788 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
.+++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 57899999999999999999999999999986
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.13 Score=53.88 Aligned_cols=246 Identities=19% Similarity=0.191 Sum_probs=159.5
Q ss_pred cCChhhHHHHHHHhhhcCCcCCc--chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQANL--YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAK 651 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 651 (968)
.|++++|.+-|+.|... |.. .-+..|.-..-+.|+.+.++++-+..-..- +.-...+.+.++..+..|+++.|.
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 47777777777777642 211 112233333456778888887766665432 223557788899999999999999
Q ss_pred HHHhcCC-----CCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCChHH-HHHHHHHHcccCcHHHHHHHH
Q 040643 652 REFLEMP-----EKNEV--SWNAMITGFS---QHGYALEAINLFEKMKKHDVMPNHVT-FVGVLSACSHVGLVNEGLRYF 720 (968)
Q Consensus 652 ~~f~~~~-----~~d~~--~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~ 720 (968)
++.+.-. +||+. .--.|+.+-+ -.-+...|...-.+..+ +.||-+. -+.-..++...|++.+|-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 9998644 55543 2223333322 23467777777777776 8899664 555567899999999999999
Q ss_pred HHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 040643 721 ESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELE 795 (968)
Q Consensus 721 ~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 795 (968)
+.+-+ .+|.++.....+ ..|.|+. +.+-+++. .++|| ...-.+...+....|++..|...++.+..++
T Consensus 287 E~aWK---~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWK---AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHh---cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 98854 467666443322 3455643 22222222 45776 4555566667788999999999999999999
Q ss_pred CCCcchHHHHHHHHhhc-CCcchHHHHHHHHHhCCCcc--CCccc
Q 040643 796 PEDSATYVLLSNIYAAA-GKWDCRDQIRQIMKDRGVKK--EPGQS 837 (968)
Q Consensus 796 p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~k--~~g~s 837 (968)
|. .+.|.+|+.|-... |+-. ++|..|- ++++- +|.++
T Consensus 360 pr-es~~lLlAdIeeAetGDqg---~vR~wlA-qav~APrdPaW~ 399 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQG---KVRQWLA-QAVKAPRDPAWT 399 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchH---HHHHHHH-HHhcCCCCCccc
Confidence 95 46888999987665 6655 4555553 24443 44443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0016 Score=55.55 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
+..++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+.+.|....++++++.|.+...+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888776 34444 4666667777778889999999999999999999889999999999999
Q ss_pred CcchHHHHHHHHH
Q 040643 814 KWDCRDQIRQIMK 826 (968)
Q Consensus 814 ~~~~a~~~~~~m~ 826 (968)
++++|....+...
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9999888765543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0034 Score=58.95 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHhcCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHH
Q 040643 644 CGSIDDAKREFLEMPE--KNE----VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~~--~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~ 715 (968)
.++...+...++.+.. |+. ..+-.+...+...|++++|...|++.......|+ ......+...+...|.+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666665555542 221 2233344566677777777777777777542222 1244455666777777777
Q ss_pred HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 716 GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 716 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
|+..++.... -......+...+|+|.+.|+.++|.+.+++
T Consensus 104 Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777755321 122244556677777777777777776654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.004 Score=60.44 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYA 737 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~ 737 (968)
....+..+...|...|++++|+..|++.++..-.|+ ...+..+...+.+.|++++|..++++..+ +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 445677778888888999999999998887432222 24677777788888888888888887754 3454 45566
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCc
Q 040643 738 CVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKW 815 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 815 (968)
.++.++...|+...|..-.+.. ...++.|....+++++++|++ |..+.+.+...|+-
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 6677777777765555332221 112577889999999999987 56666666666653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0025 Score=57.44 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
+|..+...+...|+.+.|....+++++..|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 3444444455556666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0068 Score=60.46 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=146.0
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH-HHHHHccc
Q 040643 635 NSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVG-VLSACSHV 710 (968)
Q Consensus 635 ~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~-ll~a~~~~ 710 (968)
++.+..+.+-.++++|++++..-. .++......+..+|....++..|-..++++-. ..|...-|.. -.....++
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 444444556677777877766544 33566777788888888888899999998887 6777655432 23355677
Q ss_pred CcHHHHHHHHHHhhhhcCCCCCc--chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040643 711 GLVNEGLRYFESMSTEYGLVPKP--EHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAA 788 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~i~p~~--~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 788 (968)
|.+..|+++...|.. .|.. +..-.=.-.....|++--+..++++.|-+.++.+......-..+.|+.|.|.+-+
T Consensus 92 ~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 788888888887732 2321 1111112345568899999999999998777776666555557889999999999
Q ss_pred HHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCc
Q 040643 789 NHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPG 835 (968)
Q Consensus 789 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g 835 (968)
+.+++..--+++.-..++-.+.+.|+++.|.+....+.++|++..|.
T Consensus 168 qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 99999988888888888889999999999999999999999999884
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0033 Score=63.41 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=56.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCC
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGC 748 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~ 748 (968)
.-..+.+++++|+..|.+.++ +.|+ .+-|..-..||++.|.++.|++-.++..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al------------------------ 142 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL------------------------ 142 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH------------------------
Confidence 334555666666666666666 5553 3344444555555555555555444332
Q ss_pred hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 749 LSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 749 ~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
.+.|. ...|..|--++...|+++.|+++++++++++|+|......|.
T Consensus 143 -----------~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 143 -----------SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred -----------hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 34444 455555556666666666666666666666666664444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.031 Score=54.96 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=103.3
Q ss_pred HHhcCCHHHHHHHHhcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHH
Q 040643 641 YAKCGSIDDAKREFLEMPE--K---NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 715 (968)
..-+|+.+.|...++.+.. | -+.-..+ .-+-..|++++|+++++..++.+ +-|.+++.--+...-..|.--+
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHH
Confidence 3445666666666665441 1 1111111 22345678888888888888754 3356677766666666777777
Q ss_pred HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC---ChhHHHHHHHH
Q 040643 716 GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK---NMEIGEYAANH 790 (968)
Q Consensus 716 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g---~~~~a~~~~~~ 790 (968)
|++-+....+. +.-|.+.|.-+.++|...|++++|--.++++ =+.|- ...+..|.......| |++.+....++
T Consensus 139 aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 139 AIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777766554 3556777888888888888888888888887 23443 445555555544433 78899999999
Q ss_pred HHccCCCCcchH
Q 040643 791 LLELEPEDSATY 802 (968)
Q Consensus 791 ~~~l~p~~~~~~ 802 (968)
++++.|.+.-.+
T Consensus 217 alkl~~~~~ral 228 (289)
T KOG3060|consen 217 ALKLNPKNLRAL 228 (289)
T ss_pred HHHhChHhHHHH
Confidence 999999665443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.44 Score=50.82 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=78.0
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 716 (968)
-|.-+...|+...|.++..+..-||..-|-..|.+++..|++++-.++... .- .++-|...+.+|...|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHH
Confidence 344455678888888888888888888888899999999888876664332 12 347788888888888888888
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 717 LRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
..|...+ .+.--+++|.+.|.+.+|.+.--+
T Consensus 257 ~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 257 SKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888753 135567888888888888766443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0028 Score=57.13 Aligned_cols=94 Identities=15% Similarity=0.037 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---cchHHHHH
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED---SATYVLLS 806 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~ 806 (968)
.+-..+..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|....+.++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555667777788888888877776 22333 3455567777888899999999999999998886 56789999
Q ss_pred HHHhhcCCcchHHHHHHHHHhC
Q 040643 807 NIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 807 ~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.+|...|++++|.+..+.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999988777654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.06 Score=53.47 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=55.5
Q ss_pred hhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHc----ccCcH
Q 040643 638 ITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACS----HVGLV 713 (968)
Q Consensus 638 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~----~~g~~ 713 (968)
...|.+.|+.++|.+.......-+....|. ..+.+..+.+-|.+..++|.+ + -+..|.+-|..|+. -.+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhh
Confidence 345667777777777766633333333332 223344566677777777765 2 23445554444433 23345
Q ss_pred HHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 714 NEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 714 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
.+|.-+|++|..++ .|+....+-+.-+....|+++||+.+++.
T Consensus 190 qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 190 QDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred hhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 55555555554322 33333333333333334444444444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.012 Score=57.70 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=123.6
Q ss_pred cCCHHHHHHHHhcCC--------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH-HHHcccCcH
Q 040643 644 CGSIDDAKREFLEMP--------EKNEV-SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVL-SACSHVGLV 713 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~--------~~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~~~g~~ 713 (968)
..+.++..+++.++. .+|.. .+..++-+....|+...|...++++... .|.+.-...+= .-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 356778888887765 12332 3444455556778888899999888874 37654322221 224557889
Q ss_pred HHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 714 NEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 714 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
++|.+++++..++ .|+ ...|--=+-++-..|+--+|.+-+.+. .|..|...|.-|..-|...|+++.|....+.
T Consensus 103 ~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999988766 354 555555566666677777888776665 5677888999999999999999999999999
Q ss_pred HHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 791 LLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 791 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
++=+.|-++-.+-.|+.++.-.|--+...
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999988887644433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0038 Score=68.30 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=58.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCC
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGC 748 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~ 748 (968)
..+...|++++|+++|+++++ ..|+ ...+..+..++.+.|++++|+..++...
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al------------------------ 63 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI------------------------ 63 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------
Confidence 344555666666666666665 4554 2344444445555555555555554443
Q ss_pred hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 749 LSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 749 ~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
.+.|+ ...|..+..+|...|+++.|+..++++++++|+++.....+..+...
T Consensus 64 -----------~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 64 -----------ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred -----------HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 23333 44455555556666666666666666666666666666665555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0011 Score=53.01 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC-CcchHHHHHHH
Q 040643 764 DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG-KWDCRDQIRQI 824 (968)
Q Consensus 764 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~ 824 (968)
++.+|..+...+...|+++.|+..++++++++|+++..|..++.+|...| ++++|.+..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 46788888888999999999999999999999999999999999999999 79999886544
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.014 Score=56.32 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|+.++|+.+++...+ +.|. ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 45677788888888999999999999887422221 23677788888888999999998887653 3444 445555
Q ss_pred HHHHHh-------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 739 VVDLLG-------RAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 739 lv~~l~-------r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
+..++. +.|++++|...+ +.|....+++++++|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~-------------------------~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWF-------------------------DQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHH-------------------------HHHHHHHHHHHHhCcccH
Confidence 555665 455555554433 456677788888888654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0031 Score=64.04 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=88.7
Q ss_pred CCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH-hcC--ChhHHHHHHHHHHccCCCCcchHH
Q 040643 730 VPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACR-VHK--NMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 730 ~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~-~~g--~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
.|+ .+-|..|...|.+.|+++.|..-|.+. .+.|+ +.+|..+..+.. ..| ....++.++++++.+||.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 454 888999999999999999999888887 55555 777777777743 323 567899999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHhCCCccCCccc
Q 040643 804 LLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQS 837 (968)
Q Consensus 804 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 837 (968)
+|+-.|...|++.+|...++.|-+......|..+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 9999999999999999999999886654444433
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.056 Score=64.65 Aligned_cols=148 Identities=13% Similarity=0.181 Sum_probs=94.7
Q ss_pred hhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcC
Q 040643 496 IGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSG 575 (968)
Q Consensus 496 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 575 (968)
..+-.+-.+|.+.|..+++..++..+++.. +.|+.+.|-+...|+.. ++++|.+++.+. +..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 344455555556666666666666666655 44777888888888888 888888887654 34477777
Q ss_pred ChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHh-CCCCChhHHhHHhhHHHhcCCHHHHHHHH
Q 040643 576 YCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKT-GYDSETEASNSLITLYAKCGSIDDAKREF 654 (968)
Q Consensus 576 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f 654 (968)
++.++++++.++... .|+.+.+ -.++.+.+... |+.--+.++-.|.+.|-+..+++++..+|
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 888888888888765 3443333 11222223221 33333445556667777788888888888
Q ss_pred hcCC---CCCHHHHHHHHHHHH
Q 040643 655 LEMP---EKNEVSWNAMITGFS 673 (968)
Q Consensus 655 ~~~~---~~d~~~~~~li~~~~ 673 (968)
+.+. +.|.....-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 8776 345556666676665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0041 Score=62.76 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=80.2
Q ss_pred hHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHH
Q 040643 639 TLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVN 714 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~ 714 (968)
+-..+.+++++|...|.+.. ..|.+-|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..|+...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 34668999999999999876 46899999999999999999999999999998 88985 58999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcchH
Q 040643 715 EGLRYFESMSTEYGLVPKPEHY 736 (968)
Q Consensus 715 ~a~~~~~~m~~~~~i~p~~~~y 736 (968)
+|.+.|++. ..+.|+-+.|
T Consensus 167 ~A~~aykKa---LeldP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKA---LELDPDNESY 185 (304)
T ss_pred HHHHHHHhh---hccCCCcHHH
Confidence 999998865 3667776655
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.16 Score=53.23 Aligned_cols=250 Identities=14% Similarity=0.132 Sum_probs=169.3
Q ss_pred cHHHHHHHHHhc--CChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhh--hhhHHHHHHHHHHHHHhCCCCChhHH--hH
Q 040643 563 SWNGLISGFAQS--GYCEGALQVFSQMTQVGVQANLYTFGSVVSAAAN--LANIKQGKQVHAMIIKTGYDSETEAS--NS 636 (968)
Q Consensus 563 ~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~--~~ 636 (968)
-|.+|-.|+.-. |+...|.++-.+-.+ -+..|...+..+|.+-+. .|+.+.+++-|+.|.. .|..... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 355555555544 555566555444332 256677778888887654 5899999999999876 2332221 12
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHcc-
Q 040643 637 LITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHD-VMPNHV--TFVGVLSACSH- 709 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~--t~~~ll~a~~~- 709 (968)
|.----+.|..+.|++.-+..-. | -...|.+.+...+..|+++.|+++.+.-+... +.||.. .-..||.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22223467888888888777653 2 34688999999999999999999999877643 566643 33444543221
Q ss_pred --cCcHHHHHHHHHHhhhhcCCCCCcchHHHH-HHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHH
Q 040643 710 --VGLVNEGLRYFESMSTEYGLVPKPEHYACV-VDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHKNMEIGE 785 (968)
Q Consensus 710 --~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l-v~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~ 785 (968)
.-+...|+..-.. ...+.|+..--..+ ..+|.+.|++.++-.+++.+ ..+|.+.+|..+. ....|+.-+..
T Consensus 240 ~ldadp~~Ar~~A~~---a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALE---ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHH---HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHH
Confidence 1234445444332 23567774433333 47899999999999999999 8899999886554 44666654443
Q ss_pred -HHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 786 -YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 786 -~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
+-++++-.+.|+|......++..-...|.+..|..-
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 456788899999999999999998899998777553
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0083 Score=62.89 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=72.2
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 740 VDLLGRAGCLSRAREFTEQM-PIEP-----DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
..-..+.|++.+|.+.+.+. .+.| ++-.|.....+....|+.+.|..-.+.+++|+|.-..+|..-++.|-..+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999887 4554 45555555566678999999999999999999999999999999999999
Q ss_pred CcchHHH-HHHHHHh
Q 040643 814 KWDCRDQ-IRQIMKD 827 (968)
Q Consensus 814 ~~~~a~~-~~~~m~~ 827 (968)
+|++|.+ +.+.|+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 9999987 4555553
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0015 Score=51.38 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=44.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...+...|+++.|+..++++++.+|+++..+..++.+|...|++++|....+...+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566778888888888888888888888888888888888888888887666543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.12 Score=57.40 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=58.3
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHH
Q 040643 636 SLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 715 (968)
+-..|+...|+.++|..+ ++.+|-.+-++++-.++-. .+..+...+..-+.......-
T Consensus 708 aAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccch
Confidence 345666677777777654 3344444445544444322 123344444444445555666
Q ss_pred HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC
Q 040643 716 GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMP-IEPD 764 (968)
Q Consensus 716 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p~ 764 (968)
|-++|.+|-. ...+|++-..+|+++||..+-++.| +.||
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 7777877732 3457788888888888888888885 4555
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0093 Score=55.42 Aligned_cols=105 Identities=17% Similarity=0.214 Sum_probs=79.6
Q ss_pred HhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC-
Q 040643 722 SMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM---PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE- 797 (968)
Q Consensus 722 ~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~- 797 (968)
+..++..+.|+..+--.+...+.+.|+..||...+++. ++.-|..+...+..+...-++.-.+....+++++-.|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 34455567788777777888888888888888888776 56677777777888877888888888888888888775
Q ss_pred -CcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 798 -DSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 798 -~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.+....+++..|+..|++.+|..-.+..-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHH
Confidence 56677788888888888887776555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0023 Score=50.38 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=50.0
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|....+++++++|+|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999998887 56675 77888888888999999999999999999999874
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0038 Score=60.39 Aligned_cols=89 Identities=11% Similarity=-0.053 Sum_probs=69.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
...|..++..+...|++++|...+++. .+.|+ +.+|..+...+...|+.+.|...++++++++|.+...+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 344555666677778888888877766 33332 3578888888999999999999999999999999999999999
Q ss_pred HHh-------hcCCcchHHHH
Q 040643 808 IYA-------AAGKWDCRDQI 821 (968)
Q Consensus 808 ~y~-------~~g~~~~a~~~ 821 (968)
+|. ..|++++|...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHH
Confidence 999 77787765543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0054 Score=59.53 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=54.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEP---D-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
|..++..+.+.|++++|.+.+++. ...| + ...|..+...+...|+.+.|....++++++.|+++..+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444444555555555544443 1111 1 3567777777888888899999999999999999999999999998
Q ss_pred hcCC
Q 040643 811 AAGK 814 (968)
Q Consensus 811 ~~g~ 814 (968)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 8877
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0071 Score=51.30 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHH
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDL 742 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~ 742 (968)
|..+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|.++|+..... .|. ...+..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHH
Confidence 44455556666666666666666665 34432 34444555555556666666655544321 122 2233344444
Q ss_pred HhhcCChHHHHHHHH
Q 040643 743 LGRAGCLSRAREFTE 757 (968)
Q Consensus 743 l~r~G~~~eA~~~~~ 757 (968)
+...|+.++|.+.++
T Consensus 78 ~~~~~~~~~a~~~~~ 92 (100)
T cd00189 78 YYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHhHHHHHHHHH
Confidence 444444444444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0011 Score=52.85 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=8.5
Q ss_pred HHhcCChhHHHHHHHHHHccCCCC
Q 040643 775 CRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
+...|+++.|+...+++...+|++
T Consensus 35 ~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 35 YLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCH
Confidence 333333333333333333333333
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=1.3 Score=49.88 Aligned_cols=203 Identities=15% Similarity=0.206 Sum_probs=91.9
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 040643 527 SDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAA 606 (968)
Q Consensus 527 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 606 (968)
+.+....-.+.+|+.+.|.-++|.+.|-+-..|. +-+..|...++|.+|.++-++.+- |...|+ +.-
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tl---iak- 915 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTL---IAK- 915 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHH---HHH-
Confidence 3455555566667777777777666665544332 234445555666666665544331 111111 110
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCH---HHHHH-----HHHHHHhcCCH
Q 040643 607 ANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNE---VSWNA-----MITGFSQHGYA 678 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~---~~~~~-----li~~~~~~g~~ 678 (968)
.+-++ +.+.. ..--|.++-|.|..-+|-+++.+|.++.. +-+-- .+.+. --.+.
T Consensus 916 -------~aaql---l~~~~-------~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al-LvE~h 977 (1189)
T KOG2041|consen 916 -------QAAQL---LADAN-------HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL-LVENH 977 (1189)
T ss_pred -------HHHHH---Hhhcc-------hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH-HHHHH
Confidence 11111 11110 01235678888888777777777753211 00111 11111 11233
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 679 LEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
.++++-.++....|...|... +..+|...++-++.+..-+ -....|+-.|..--.+-|..+.|+.---.
T Consensus 978 ~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~ 1046 (1189)
T KOG2041|consen 978 RQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALI 1046 (1189)
T ss_pred HHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhh
Confidence 445555555555554333222 1233444444444332211 11234454555555667888888754322
Q ss_pred C----CCCCCHHHHHHH
Q 040643 759 M----PIEPDAMVWRTL 771 (968)
Q Consensus 759 m----~~~p~~~~~~~l 771 (968)
+ .+-|-..++..|
T Consensus 1047 L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1047 LSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hccHhhcCCHHHHHHHH
Confidence 2 234445555433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.012 Score=54.20 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=73.4
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccC
Q 040643 636 SLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVG 711 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g 711 (968)
++..-+...|++++|.++|+.+. .| +..-|-.|...+-..|++++|+..|..... +.|| +.++-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 34445567899999999998765 44 667888899999999999999999999988 6675 667888888889999
Q ss_pred cHHHHHHHHHHhhhhcC
Q 040643 712 LVNEGLRYFESMSTEYG 728 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~ 728 (968)
+.++|++.|+.....-+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999987765443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.034 Score=58.60 Aligned_cols=144 Identities=17% Similarity=0.225 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSA-CSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++- +.+.+.+.+|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 467788888888888888888888887532 2233344444443 33456677799999988877543 3556778889
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
.+.+.|+.+.|..++++. ..-|. ..+|...+.--..+|+++....+.+++.++-|++.... .+++-|.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~-~f~~ry~ 151 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE-LFSDRYS 151 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH-HHHCCT-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH-HHHHHhh
Confidence 999999999999999886 22333 46999999999999999999999999999999855443 3444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.89 Score=48.56 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=84.3
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
+..+.-+...|....|.++-.+..-+|-.-|-..|.+|+..++|++-.++... +-+++-|-.++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455667789999999999999989999999999999999999987765432 224588999999999999998
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHH
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREF 654 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f 654 (968)
+|..+...+ .+..-+.+|.+||++.+|.+.-
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 888776551 2256789999999999997763
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.019 Score=53.23 Aligned_cols=100 Identities=12% Similarity=0.057 Sum_probs=79.5
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
||.++ .+..-....-+...|++++|..+|+-. -..| +...|..|...|...|+.+.|......+.-++++|+.+++.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55554 333334455566788889988888876 1222 35578899989999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHh
Q 040643 805 LSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 805 l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.+..|...|+.++|........+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999997776543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0019 Score=53.98 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChH
Q 040643 675 HGYALEAINLFEKMKKHDVMP---NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~ 750 (968)
.|++++|+.+|+++.+ ..| +...+..+..++.+.|++++|..+++.. .+.|+ ....-.++.+|...|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHH
Confidence 5677788888888777 344 3344555677777788888888877762 22332 222334467777778888
Q ss_pred HHHHHHHh
Q 040643 751 RAREFTEQ 758 (968)
Q Consensus 751 eA~~~~~~ 758 (968)
+|.+.+++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 87777654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.13 Score=54.38 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC---CCCC---CHHHHHHHHHH---HHh
Q 040643 711 GLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM---PIEP---DAMVWRTLLSA---CRV 777 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~p---~~~~~~~ll~~---~~~ 777 (968)
|++++|.++|+...+-|..... ...+.-+.+++.+.|++++|.+++++. ..+. ...+-..++.+ +-.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 4555555555444333322221 233445566777777777777777664 1111 11222223332 234
Q ss_pred cCChhHHHHHHHHHHccCCCC--cchHHHHHHH
Q 040643 778 HKNMEIGEYAANHLLELEPED--SATYVLLSNI 808 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~ 808 (968)
.||...|....++..+.+|.- +.=+-++.++
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 567777778888877777753 2224444443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.004 Score=50.31 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=46.4
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..+...++++.|..+.+++++++|+++..+..++.+|...|+|++|.+..+..-+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999887665544
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0034 Score=49.91 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=45.8
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..|+++.|...++++++.+|+++..+..|+.+|.+.|++++|.++.+.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998775543
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.23 Score=55.17 Aligned_cols=229 Identities=14% Similarity=0.229 Sum_probs=111.9
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCcee
Q 040643 385 NVMLVAYGQLND--LSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVS 462 (968)
Q Consensus 385 ~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 462 (968)
+..=.+|.+..+ +-+.+.-+++|+++|-.|+...... ++...|.+.+|.++|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~----------------~~Ay~gKF~EAAklFk--------- 656 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLAD----------------VFAYQGKFHEAAKLFK--------- 656 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHH----------------HHHhhhhHHHHHHHHH---------
Confidence 333344544333 4455556778888888888654432 2333455666665554
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
++|.-..|+++|..|+--. ..+-+...|+.++-+.+...-.. ...++.--.+...|+..
T Consensus 657 ---------~~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiS 715 (1081)
T KOG1538|consen 657 ---------RSGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLIS 715 (1081)
T ss_pred ---------HcCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhc
Confidence 3555566666666554210 11112222332222222211111 01111111344556666
Q ss_pred cCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 543 CGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
.|+.++|..+ ...+|-.+-+.++-+++... +..++..+..-+-+...+..|-++|..+
T Consensus 716 aGe~~KAi~i------------------~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 716 AGEHVKAIEI------------------CGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred ccchhhhhhh------------------hhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 6777666554 23344444444444444322 2223333333334445555666666554
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--CCHHH----H-------HHHHHHHHhcCCHHHHHHHHHHHH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--KNEVS----W-------NAMITGFSQHGYALEAINLFEKMK 689 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d~~~----~-------~~li~~~~~~g~~~~A~~l~~~m~ 689 (968)
-+. .+++++....+++++|..+-++.++ +|+.. | .--=.+|.+.|+-.+|..+++++.
T Consensus 774 gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 774 GDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred ccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 331 3577788888888888888888773 34321 1 111234445555555555555544
Q ss_pred H
Q 040643 690 K 690 (968)
Q Consensus 690 ~ 690 (968)
.
T Consensus 845 n 845 (1081)
T KOG1538|consen 845 N 845 (1081)
T ss_pred h
Confidence 3
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.24 Score=49.42 Aligned_cols=141 Identities=12% Similarity=0.044 Sum_probs=98.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHH----HHHHHHhh
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYA----CVVDLLGR 745 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~----~lv~~l~r 745 (968)
..|...|++++|++..+.... + +... .=.....+...+|-|.+.++.|.. +.- -.+.+ ..|.+..-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~--l--E~~A--l~VqI~lk~~r~d~A~~~lk~mq~---ide-d~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN--L--EAAA--LNVQILLKMHRFDLAEKELKKMQQ---IDE-DATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccch--H--HHHH--HHHHHHHHHHHHHHHHHHHHHHHc---cch-HHHHHHHHHHHHHHhcc
Confidence 446777888888888776211 1 1111 112233455677888888888853 222 22333 44555556
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH
Q 040643 746 AGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 746 ~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
.++..+|.=+|++| ...|+..+.+-.+..|-..||++.|+...+.++.-+|.++.+...+.-.--..|+-.++..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 77889999999999 4788888888888888899999999999999999999998777776666667788766643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.031 Score=58.89 Aligned_cols=137 Identities=12% Similarity=0.154 Sum_probs=82.1
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHH-HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHH
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA-AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLY 641 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 641 (968)
+|-.++...-+.+..+.|-.+|.+.++.+ ..+...|...... +...++.+.|..+++...+. ++.+...+...++++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444445545555555555554321 1111122211111 11234555577777766664 566778888889999
Q ss_pred HhcCCHHHHHHHHhcCCC--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 040643 642 AKCGSIDDAKREFLEMPE--K----NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGV 703 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~~--~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~l 703 (968)
.+.|+.+.|+.+|++... + -...|...+.--.++|+.+...++.+++.+ ..|+..++..+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f 146 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELF 146 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHH
Confidence 999999999999998762 2 235899999998999999999999988888 56664433333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.036 Score=49.34 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-chHHHHHHHH
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-EHYACVVDLL 743 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~y~~lv~~l 743 (968)
.+..++-..|+.++|+.+|++.+..|..+. ...+..+.+++.+.|++++|..+|+.....+.-.+.. ..-..+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 356678889999999999999999887765 3478889999999999999999999887664221111 2222345678
Q ss_pred hhcCChHHHHHHHHh
Q 040643 744 GRAGCLSRAREFTEQ 758 (968)
Q Consensus 744 ~r~G~~~eA~~~~~~ 758 (968)
...|+.+||.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 889999999876543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.29 Score=52.62 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=99.3
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCCC---C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPEK---N----EVSWNAMITGFSQ---HGYALEAINLFEKMKKHDVMPNHVTFVGVLSA 706 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~~---d----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 706 (968)
|+-.|-...+++.-.++++.+... + ...--...-++-+ .|+.++|++++..++...-.+++.||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333477777777777777777632 1 1112223344445 67888888888886665556677777666554
Q ss_pred Hc---------ccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHH----HHHH---H-----hCCCCCCH
Q 040643 707 CS---------HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA----REFT---E-----QMPIEPDA 765 (968)
Q Consensus 707 ~~---------~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA----~~~~---~-----~m~~~p~~ 765 (968)
|- .....++|...+. +.|.+.|+..+=-.++-++..+|...+. .++. . +-..++..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHH---HHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 32 2234677777777 4466777654433444555555543222 2222 1 11233444
Q ss_pred H--HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 766 M--VWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 766 ~--~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
. ...+++.++...||.+.|.+++++++.+.|+.-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4 447899999999999999999999999987654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.34 E-value=2 Score=46.36 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=78.4
Q ss_pred hhccCChhHHHHHHhhCCCC---Cc------ccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHH--hc
Q 040643 259 YSRSGNLTSAEQIFSKMQQR---DG------VTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSAC--AS 327 (968)
Q Consensus 259 y~~~g~~~~A~~~f~~m~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~ 327 (968)
+-+.+++.+|..+|.++-.. +. +.-+-+|++|..++ .+.....+....+. .| ...|..+..+. -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45778999999999988643 21 22456777776544 33333333333322 34 44566666654 36
Q ss_pred cCChHHHHHHHHHHHHh--CCC------------CChhhHhHHHHHHHhcCChhHHHHHHhhCCC--------CCcchHH
Q 040643 328 VGAFRTGEQLHSYAIKV--GIS------------KDIIVEGSMLDLYVKCSDVETAYKFFLTTET--------ENVVLWN 385 (968)
Q Consensus 328 ~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~ 385 (968)
.+.+..|.+.+..-... +.. +|.+.-+..++...+.|.+.+++.+++++.+ -|+.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67788888877766554 221 2333445566777777888888887776643 2566676
Q ss_pred HHHHHHHh
Q 040643 386 VMLVAYGQ 393 (968)
Q Consensus 386 ~li~~~~~ 393 (968)
-++-.+.+
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 65555544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0054 Score=48.90 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=49.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCC
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK-NMEIGEYAANHLLELEP 796 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p 796 (968)
..|..+...+.+.|++++|+..+++. .+.|+ +.+|..+..++...| +.+.|...++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 44666677777778888887777765 55665 777878888888888 79999999999999988
|
... |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.031 Score=47.79 Aligned_cols=80 Identities=13% Similarity=0.016 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHhhcccC--------chHHHHHHHHHHHHhcCCCchhHH
Q 040643 182 WVAMISGFSQNGYEREAILLFCQMHILGT-VPTPYAISSALSACTKIE--------LFEIGEQFHGLIFKWGFSSETFVC 252 (968)
Q Consensus 182 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 252 (968)
-...|..+..++++.....+|+.+++.|+ .|+..+|+.+|.+..+.. .+-....+++.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 899999999999976543 234567888899999999999999
Q ss_pred HHHHHHhhc
Q 040643 253 NALVTLYSR 261 (968)
Q Consensus 253 ~~Li~~y~~ 261 (968)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.044 Score=60.08 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=81.2
Q ss_pred CCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHh--CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC----CCCHHH
Q 040643 591 GVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKT--GYDSETEASNSLITLYAKCGSIDDAKREFLEMP----EKNEVS 664 (968)
Q Consensus 591 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~d~~~ 664 (968)
+...+.+.+..+++.+.+..+++.+..++-..... ....-..+..++|..|.+-|..++|.++++.=. =||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456666777777777777777777766555543 222233444577777777777777777776533 367777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHccc
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHV 710 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 710 (968)
+|.++..+.+.|++..|.+++.+|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777777677777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.052 Score=62.12 Aligned_cols=49 Identities=16% Similarity=0.029 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHcc--CCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 781 MEIGEYAANHLLEL--EPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 781 ~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
++.+...++++..+ +|.++..|..++-++...|+|++|....++..+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34566666776664 78888899999999999999999999766665543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.015 Score=49.61 Aligned_cols=87 Identities=8% Similarity=0.149 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCcee
Q 040643 384 WNVMLVAYGQLNDLSESFQIFKQMQTEGL-TPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVS 462 (968)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 462 (968)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+..--.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~----------------------------- 78 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS----------------------------- 78 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------------
Confidence 34567777777999999999999999999 999999999998866531110
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhh
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACA 506 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 506 (968)
..-.++.-+.+.+|+.|...+++|+..||+.++....
T Consensus 79 -------~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 79 -------EDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred -------hhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 1112234578899999999999999999999988754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.057 Score=52.33 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHhh-----hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHH
Q 040643 595 NLYTFGSVVSAAAN-----LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMI 669 (968)
Q Consensus 595 ~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li 669 (968)
|..+|..++..+.+ .|..+-....+..|.+.|++-|..+|+.|++.+=| |.+- -..+|+.+ |+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-------F~--- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-------FM--- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-------hc---
Confidence 44444444444432 35666666777888888999999999999987765 3221 11111111 10
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL 712 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 712 (968)
-...+-+-|++++++|...|+.||..|+..|+..+...+.
T Consensus 114 ---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1123556789999999999999999999999988876664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.045 Score=53.03 Aligned_cols=98 Identities=16% Similarity=0.256 Sum_probs=74.6
Q ss_pred HHHHhcC--CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHccc-------------
Q 040643 651 KREFLEM--PEKNEVSWNAMITGFSQH-----GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHV------------- 710 (968)
Q Consensus 651 ~~~f~~~--~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~------------- 710 (968)
...|+.. ..+|..++..+|..|.++ |+.+=....+..|.+-|+.-|-.+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 356777777777777644 66666677778888888888888888888765432
Q ss_pred ---CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCCh
Q 040643 711 ---GLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCL 749 (968)
Q Consensus 711 ---g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~ 749 (968)
.+.+-|++++++| +.+|+-|+.+++..+++.+|+.+..
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccHH
Confidence 2356689999999 5679999999999999999998864
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.82 Score=48.38 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChH-HHHHHHHHHcccCcHHHHHHHHHHhh
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMP-----NHV-TFVGVLSACSHVGLVNEGLRYFESMS 724 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-----d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 724 (968)
+..++..+.+.|++++|+++|++....-... +.. .|...+-.+...|+...|.+.|+...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456667777888888888888776643221 111 23333335556777778877777664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.13 E-value=2.4 Score=48.65 Aligned_cols=329 Identities=12% Similarity=0.017 Sum_probs=157.0
Q ss_pred ccccCCCcccHH-----HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCC---hhHHHHHHhhCCC-
Q 040643 308 LDCLKPDCVTVA-----SLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSD---VETAYKFFLTTET- 378 (968)
Q Consensus 308 ~~g~~p~~~t~~-----~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~~~~- 378 (968)
+-|+..+..-|. .++.-+...+.+..|.++-..+...-... ..++.....-+.+..+ -+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555444333 34555556666677766655543211111 4566666666666532 3334444445554
Q ss_pred -CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHh
Q 040643 379 -ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEG----LTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILR 453 (968)
Q Consensus 379 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 453 (968)
..-++|..+..--.+.|+.+-|..+++.=...+ +-.+..-+...+.-+...|+.+...++.-++.+-...-.+|.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 455678888877778888888877766432222 111233344455556666666665555544432222222222
Q ss_pred hCC-CC-CceeHHHHH---------HHHHhcCChhHHHHHHHH-H--HhcCCCCChhhHHHHHHHhhcccchhhhhhhhH
Q 040643 454 RLP-ED-DVVSWTAMI---------VGFVQHGMFGEALELFEE-M--ENQGIQSDNIGFSSAISACAGIQALNQGRQIHA 519 (968)
Q Consensus 454 ~~~-~~-~~~~~~~li---------~~~~~~g~~~~A~~l~~~-m--~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 519 (968)
.+. .| ....|--++ +.|-+..+. +++.-|.. - ...-+.+-.......-++|++......+.+..+
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 211 11 111111111 112222222 22222111 0 000011112222333344444443222111111
Q ss_pred hhh-----------hhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhh
Q 040643 520 QSY-----------ISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMT 588 (968)
Q Consensus 520 ~~~-----------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 588 (968)
.-. +.|....-.+.+--+.-+...|+...|.++-.+..-+|-..|---+.+++..+++++-+++-+.+.
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 111 112112222223334445566777777777777777777677777777777777777666554443
Q ss_pred hcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHH
Q 040643 589 QVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKRE 653 (968)
Q Consensus 589 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 653 (968)
. ..-|.....+|.+.|+.++|+.+...+-. +.-.+.+|.++|++.+|.++
T Consensus 743 s------PIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 S------PIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred C------CCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 1 34455566777777777777666433211 11456677777777666554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.21 Score=54.42 Aligned_cols=211 Identities=10% Similarity=0.114 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhc-------CC
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEY-------GL 729 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------~i 729 (968)
+...|+.+..+|...|++++|+..|++.++ +.||.. +|..+..+|.+.|++++|+..++...+.+ .-
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~ 151 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN 151 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 445566666666666666666666666665 555532 35666666666666666666665554321 11
Q ss_pred CCCc------chHHHHHHHHhhcCChH-----HHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 040643 730 VPKP------EHYACVVDLLGRAGCLS-----RAREFTEQM--PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL- 794 (968)
Q Consensus 730 ~p~~------~~y~~lv~~l~r~G~~~-----eA~~~~~~m--~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 794 (968)
.|+. ..+.-++..+.+.|... .=.++..+. |+.- --..|.++..+-.+-. +-...++++.+-.-
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aPfR~~R~f~y~a~~asa~ig~-~i~~~rl~~a~aG~~ 230 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGIST-FFTVPRLIRAIQGGD 230 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCC
Confidence 1211 13445555555555311 112333332 3221 1334444433311110 00011111111111
Q ss_pred --------CC---CCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCC-----c--ccEEEEcCEEEEEe-cCCCCC
Q 040643 795 --------EP---EDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEP-----G--QSWIEVKNSIHAFF-VGDRLH 855 (968)
Q Consensus 795 --------~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~-----g--~s~i~~~~~~~~f~-~~d~~h 855 (968)
-| -|.+...+++.+|....+-+|+ ++.+..++..+-..+ | .+..+..|..+.++ +|+..|
T Consensus 231 ~ap~l~~~~~nlaI~igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~e~ 309 (453)
T PLN03098 231 GAPDVLETAGNAAINIGGIVAFVSLFLWENKKEEE-QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKES 309 (453)
T ss_pred CCccHhHhhcccchHHHHHHHHHHHHHHHhcccHH-HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCHHH
Confidence 01 1456677788888766555554 344456655443321 1 12233455556554 577643
Q ss_pred cchHHHHHHHHHHHHHHHHcCc
Q 040643 856 PLADKIYDYLGNLNRRVAEIGY 877 (968)
Q Consensus 856 ~~~~~i~~~l~~l~~~~~~~g~ 877 (968)
..+-....+...+++.+.|-
T Consensus 310 --v~~al~~ae~~r~~L~~r~V 329 (453)
T PLN03098 310 --VTLAMQKAERYRTELLKRGV 329 (453)
T ss_pred --HHHHHHHhHHHHHHHHHcCc
Confidence 45556666777777777663
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.25 Score=48.96 Aligned_cols=239 Identities=13% Similarity=0.044 Sum_probs=155.1
Q ss_pred CccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcc--cHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchh
Q 040643 75 TVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEA--TFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISN 152 (968)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 152 (968)
....|+.-+.++.+...+++|..-++...+-. .||-+ .|+.+- =.+.|++-.=.-+-+|+.+.+.-. .-++
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~Yey~p~iy--p~rrGSmVPFsmR~lhAe~~~~lg----npqe 140 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLYYEYYPHVY--PGRRGSMVPFSMRILHAELQQYLG----NPQE 140 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-CcceeeeeccccC--CCCcCccccHHHHHHHHHHHHhcC----CcHH
Confidence 34567888888888888888877666554421 11110 000000 012233221134556776654321 2367
Q ss_pred HHHHHHHhcCCchHHHHHHhhCCCC--C--------eehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040643 153 PLIDLYAKNGFIDSAKKVFNNLCFK--D--------SVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALS 222 (968)
Q Consensus 153 ~li~~y~~~g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 222 (968)
+|...|.-....++-...|+.-..| . ...-++++..+.-.|.+.-.+.++.+..+..-+.++.....+.+
T Consensus 141 sLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr 220 (366)
T KOG2796|consen 141 SLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGR 220 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHH
Confidence 8888877776666666666654322 1 22346677788888888889999999988766667777777777
Q ss_pred hhcccCchHHHHHHHHHHHHhcCCCchhHHHHHH-----HHhhccCChhHHHHHHhhCCCC---CcccHHHHHHHHHcCC
Q 040643 223 ACTKIELFEIGEQFHGLIFKWGFSSETFVCNALV-----TLYSRSGNLTSAEQIFSKMQQR---DGVTYNSLISGLAQCG 294 (968)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li-----~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g 294 (968)
.--..||.+.++..++.+.+..-..|....+.++ ..|.-.+++..|...|++++.. |.+.-|.-.-+..-.|
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 7788899999999999888765555555555544 3455668889999999988864 4555555444555578
Q ss_pred ChhHHHHHHHHhhccccCCCcccHHHHH
Q 040643 295 YSDKALELFEKMQLDCLKPDCVTVASLV 322 (968)
Q Consensus 295 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll 322 (968)
+..+|++..+.|.+. .|...+-.+++
T Consensus 301 ~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 899999999999864 56666655444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.009 Score=42.47 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
.+|..|..++...|+.+.|+.+++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888889999999999999999999999999999888764
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.072 Score=58.47 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHH
Q 040643 282 TYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYV 361 (968)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 361 (968)
+..++|+.|.+.|..+++++++..=...|+-||.+||+.++..+...|++..|.++...|...+.-.+..++.--+..+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 45678888888888888888888777788888888888888888888888888888777777765555444433333333
Q ss_pred hc
Q 040643 362 KC 363 (968)
Q Consensus 362 ~~ 363 (968)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 33
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.018 Score=46.48 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=52.1
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 741 DLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
.+|.+.+++++|.+.++.+ .+.|+ ...|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677888999999988887 56666 66666666778889999999999999999999887665544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.048 Score=56.41 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHcccCcHHHHHHHHHHhhhhcC
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMPNH----VTFVGVLSACSHVGLVNEGLRYFESMSTEYG 728 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 728 (968)
|+.-+.-+...|++++|+..|+.+++ ..|+. ..+..+..++...|++++|...|+.+.+.|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 44444444556888888888888887 56764 3566666777777777777777777765543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.89 E-value=4.7 Score=46.50 Aligned_cols=268 Identities=16% Similarity=0.099 Sum_probs=147.9
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhh
Q 040643 458 DDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQ----SDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIG 533 (968)
Q Consensus 458 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 533 (968)
...++|..+..--.+.|+++-|..+++.=...+.. .+..-+...+.-+...|+.+...++.-++...-..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~------ 578 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR------ 578 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH------
Confidence 35567888887778889998888887653332211 13334566677777888877777666555432110
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCC-CCcccHHHHHHHHHhcCChhhHHHHH--HHhh----hcCCcCCcchHHHHHHHH
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDA-KDNISWNGLISGFAQSGYCEGALQVF--SQMT----QVGVQANLYTFGSVVSAA 606 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~~l~--~~m~----~~g~~p~~~t~~~ll~a~ 606 (968)
.+...-..+...|..++.+... .|..+ +-+.|-+ ++-.+++.-| +... ..|..|+ ....-++|
T Consensus 579 ---s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~ 648 (829)
T KOG2280|consen 579 ---SSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAF 648 (829)
T ss_pred ---HHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHH
Confidence 0111111222233333332211 11100 1111111 1111121111 1100 1122333 33334445
Q ss_pred hhhhhHHHHHH-------HH---HHHH-HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040643 607 ANLANIKQGKQ-------VH---AMII-KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH 675 (968)
Q Consensus 607 ~~~~~~~~a~~-------~~---~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 675 (968)
++......+.+ ++ ..+. +.|....--+.+--+.-+..-|+..+|.++-.+..-||-..|---+.+++..
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhh
Confidence 54433211111 11 1111 1222222222233344456679999999999999888988888889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
+++++-.++-+.+. | ++-|.....+|...|..+||.+|+.+.. + +.-.+++|.+.|++.+|.++
T Consensus 729 ~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~------~----l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 729 KKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG------G----LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC------C----hHHHHHHHHHhccHHHHHHH
Confidence 99987776655432 2 5667778899999999999999987552 1 22578999999999999876
Q ss_pred HH
Q 040643 756 TE 757 (968)
Q Consensus 756 ~~ 757 (968)
--
T Consensus 793 A~ 794 (829)
T KOG2280|consen 793 AA 794 (829)
T ss_pred HH
Confidence 43
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.071 Score=47.48 Aligned_cols=82 Identities=15% Similarity=-0.004 Sum_probs=63.1
Q ss_pred HHHHhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CcchHHHHHHHHhh
Q 040643 740 VDLLGRAGCLSRAREFTEQM---PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE---DSATYVLLSNIYAA 811 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 811 (968)
..++-..|+.++|..++++. ...+. ...+-.+.++++..|+++.|..+.++.++-.|+ +....+.++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 44556677788888887765 22222 345556777889999999999999999988888 77788888889999
Q ss_pred cCCcchHHHH
Q 040643 812 AGKWDCRDQI 821 (968)
Q Consensus 812 ~g~~~~a~~~ 821 (968)
.|+++||.+.
T Consensus 88 ~gr~~eAl~~ 97 (120)
T PF12688_consen 88 LGRPKEALEW 97 (120)
T ss_pred CCCHHHHHHH
Confidence 9999999875
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.068 Score=48.10 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=42.4
Q ss_pred cCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 040643 727 YGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM----PIEPDAMVWRTLLSACRVHKN 780 (968)
Q Consensus 727 ~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g~ 780 (968)
..+.|+.....+++..|+..|++..|.++++.. |++-+..+|..|+.-|...-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 355677888888889999999999998887765 666668899999988766554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.5 Score=44.94 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCc---chHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDS---ATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+...|+..-|..-++.+++--|+.+ .+...+.+.|...|.-++|.++.+.+.
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5677888889999999999888754 567788899999999999999887664
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.036 Score=60.09 Aligned_cols=64 Identities=13% Similarity=-0.062 Sum_probs=51.8
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch---HHHHHHHHhhcCCcchHHHHHHHH
Q 040643 762 EPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT---YVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 762 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.|+ ...|..+..++...|+++.|...++++++++|++..+ |+.++.+|+..|+.++|....+..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 454 7888888888888888888888888888888888754 888888888888888888754433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.9 Score=42.14 Aligned_cols=192 Identities=19% Similarity=0.136 Sum_probs=134.6
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP-----EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLS 705 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 705 (968)
..........+...+.+..+...+.... ......+..+...+...+...++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4566667777778888888877777653 33455677777777788888888888888887433331 22222223
Q ss_pred -HHcccCcHHHHHHHHHHhhhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 040643 706 -ACSHVGLVNEGLRYFESMSTEYGLVP----KPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD--AMVWRTLLSACRV 777 (968)
Q Consensus 706 -a~~~~g~~~~a~~~~~~m~~~~~i~p----~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~ 777 (968)
++...|.++++...|..... ..| ....+......+...|+.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67888889999888887732 333 2333333444466788888888888776 44444 6777777778888
Q ss_pred cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 778 HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.++.+.+......+++..|.....+..++.++...|.++++........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999999877778888888887777888877655443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.055 Score=55.96 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---cchHHHHHH
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED---SATYVLLSN 807 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~ 807 (968)
|..-++++.+.|++++|.+.++.. ...|+ +.++-.|..++...|+++.|...++++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333334434445555555444443 11222 1233334444555666666666666666655553 344444566
Q ss_pred HHhhcCCcchHHHHHHHH
Q 040643 808 IYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 808 ~y~~~g~~~~a~~~~~~m 825 (968)
+|...|++++|.++.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666666666666655544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.35 Score=47.97 Aligned_cols=170 Identities=13% Similarity=0.053 Sum_probs=113.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHhCCCC--Cc--------ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHH
Q 040643 533 GNALISLYARCGRIQEAYLVFNKIDAK--DN--------ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSV 602 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~~A~~~f~~m~~~--d~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 602 (968)
+++|...|.-..-+++-...|+.-..+ .+ ...+.++....-.|.+.-.+.++++.++..-..+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455666665555555555555443322 22 23455666666677788888888888876555566667777
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCCChh-----HHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHh
Q 040643 603 VSAAANLANIKQGKQVHAMIIKTGYDSETE-----ASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQ 674 (968)
Q Consensus 603 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~ 674 (968)
.+..-+.|+.+.+...++.+.+..-..|.. +.......|.-..++.+|...|++++ ..|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 777788899999998888777643333333 33333344666778888888898877 3466777766666667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHVTFVGVL 704 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 704 (968)
.|+..+|++..++|.+ ..|.+.+-.+++
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 7899999999999998 677766555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.38 Score=52.52 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=105.0
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHHH-HCCCCCChHH-HHHHHHHHc---------ccCcHHHHHHHHHHhh
Q 040643 663 VSW--NAMITGFSQH-----GYALEAINLFEKMK-KHDVMPNHVT-FVGVLSACS---------HVGLVNEGLRYFESMS 724 (968)
Q Consensus 663 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~-~~g~~Pd~~t-~~~ll~a~~---------~~g~~~~a~~~~~~m~ 724 (968)
..| ..++.|...- -..+.|+.+|.+.. .+.+.|+... |..+...+. ......+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 4555554431 14567888999988 2237887543 333322211 1233455666655443
Q ss_pred hhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 725 TEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 725 ~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.+.|+ ......+..+++-.|+++.|..++++. .+.|| +.+|......+...|+.+.|....++.++++|...++
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 44554 666677777888888899999999988 67888 7777777777888999999999999999999988777
Q ss_pred HHHHHHH--HhhcCCcchHHHHH
Q 040643 802 YVLLSNI--YAAAGKWDCRDQIR 822 (968)
Q Consensus 802 ~~~l~~~--y~~~g~~~~a~~~~ 822 (968)
-++--++ |... ..++|.++.
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHH
Confidence 7665555 5554 456666654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.26 Score=46.17 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+...++..+...|+.+.+...+++++.++|-|-..|..|..+|...|+..+|.++...++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455677778899999999999999999999999999999999999999999999766553
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=1.1 Score=46.00 Aligned_cols=170 Identities=11% Similarity=0.119 Sum_probs=87.7
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCccc------HHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhh--
Q 040643 537 ISLYARCGRIQEAYLVFNKIDAKDNIS------WNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAAN-- 608 (968)
Q Consensus 537 i~~y~k~g~~~~A~~~f~~m~~~d~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 608 (968)
...+.+.|++++|.+.|+.+....+.+ .-.++.+|-+.+++++|...|++..+....-...-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 344566788888888888876543221 223556778888899999998888775322222333333333321
Q ss_pred hh---------------h---HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHH
Q 040643 609 LA---------------N---IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMIT 670 (968)
Q Consensus 609 ~~---------------~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~ 670 (968)
.+ + ...|...++ .+|+-|=...-..+|......+...=..---.+..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~---------------~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFS---------------KLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHH---------------HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 111222222 22333333333344433333322111111112344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPN----HVTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
-|.+.|.+..|+.-|+.+++ --|+ ......+..++.+.|+.++|..+....
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 56677777777777777776 2333 234555556666666666666655543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.87 E-value=9.2 Score=43.62 Aligned_cols=149 Identities=15% Similarity=0.211 Sum_probs=73.7
Q ss_pred CChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCC-----cchHHHHHHHHHhcCCHHHHHHH
Q 040643 329 GAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETEN-----VVLWNVMLVAYGQLNDLSESFQI 403 (968)
Q Consensus 329 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l 403 (968)
|.+++|++++-.+-+..+ -|.++.+.|++-...++++.-...+ ...|+.+...++....+++|.+.
T Consensus 748 g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444321 2455666666666655554432211 24566666666666666666665
Q ss_pred HHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHH
Q 040643 404 FKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELF 483 (968)
Q Consensus 404 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 483 (968)
|..-. +.+.-.+.+-++..+++-..+-..+ +.|....-.|...+...|..++|.+.|
T Consensus 819 Y~~~~----------------------~~e~~~ecly~le~f~~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 819 YSYCG----------------------DTENQIECLYRLELFGELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhcc----------------------chHhHHHHHHHHHhhhhHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 54321 1111111111112222222222222 334555667777888888888887776
Q ss_pred HHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhh
Q 040643 484 EEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518 (968)
Q Consensus 484 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 518 (968)
-+--. | -..+.+|..++++.+|.++-
T Consensus 876 Lr~s~----p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 876 LRRSL----P-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HhccC----c-----HHHHHHHHHHHHHHHHHHHH
Confidence 44211 1 13455666666665555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.84 E-value=1.5 Score=52.87 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040643 544 GRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMII 623 (968)
Q Consensus 544 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 623 (968)
+++++|..-+..+. ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|++ ++.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 34445544444443 223333344444555555555543 5666666555555443 122
Q ss_pred HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH--HH
Q 040643 624 KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVT--FV 701 (968)
Q Consensus 624 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t--~~ 701 (968)
+.. .++--.-||.+||++++|.+ +|...|++++|+.+..+|.. .-|.+. -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 211 12223447889999999854 56667888888888877642 223322 24
Q ss_pred HHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 702 GVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 702 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
.|.+-|..++..-+|-++...-..+ +.--+.+|+++-.+++|..+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 5667778888887777776544332 334577888888888888776554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.7 Score=46.29 Aligned_cols=239 Identities=13% Similarity=0.040 Sum_probs=139.3
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCccc-HHHHH--HHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHH
Q 040643 539 LYARCGRIQEAYLVFNKIDAKDNIS-WNGLI--SGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~d~~~-~~~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 615 (968)
.+.-.|+.++|.++--.+..-|... +-..+ .++--+++.+.|...|++-+.. .|+...- +.....
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~s----------k~~~~~ 245 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKS----------KSASMM 245 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhH----------HhHhhh
Confidence 3444555555555544333332221 11112 2233456677777777776644 3443322 111112
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--E-----KNEVSWNAMITGFSQHGYALEAINLFEKM 688 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m 688 (968)
...+....+. .+...|.|++..|.+.+.+.. . ++...|........+.|+.++|+.--++.
T Consensus 246 ~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 246 PKKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 2222222222 356778999999999998876 2 34556777777888999999999999888
Q ss_pred HHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHH
Q 040643 689 KKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMV 767 (968)
Q Consensus 689 ~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~ 767 (968)
.+ +.|..+ .+..-..++...+.+++|.+.|++..+. +-+.++-..+ .+|..-+++.. -.-
T Consensus 314 l~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~---~~s~e~r~~l----------~~A~~aLkkSk----Rkd 374 (486)
T KOG0550|consen 314 LK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL---EKDCEIRRTL----------REAQLALKKSK----RKD 374 (486)
T ss_pred hh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccchHHHH----------HHHHHHHHHhh----hhh
Confidence 77 555433 3444445566678999999999876432 2222222222 23333333222 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCC-cch-------HHHHHHHHhhcCCcchHHH
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPED-SAT-------YVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-~~~-------~~~l~~~y~~~g~~~~a~~ 820 (968)
|-.+|+.-+...+.|......+.++...|+- ++. +--.++.|.-.++.++..+
T Consensus 375 ~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 375 WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 6677788888888888888888888888874 333 2345556666665555444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=12 Score=44.03 Aligned_cols=175 Identities=15% Similarity=0.124 Sum_probs=104.1
Q ss_pred HHHHHhhccCChhHHHHHHhhCCCCCcccHHHHH----HHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccC
Q 040643 254 ALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLI----SGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVG 329 (968)
Q Consensus 254 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 329 (968)
.-+++..+...++.|..+-..-..+ ...-..+. .-+.+.|++++|...|-+-... +.| +.+++-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 3455666666666666665543322 22222222 2345678888888877665421 222 23455555555
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcch--HHHHHHHHHhcCCHHHHHHHHHHH
Q 040643 330 AFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVL--WNVMLVAYGQLNDLSESFQIFKQM 407 (968)
Q Consensus 330 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m 407 (968)
....-..+++.+.+.|+... .--+.|+.+|.|.++.+.-.+..+... ..... ....+..+-+.+-.++|..+-.+.
T Consensus 412 ~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 55556666777778886543 334678999999999998888887776 22222 445566666666666666554433
Q ss_pred HhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCC
Q 040643 408 QTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPED 458 (968)
Q Consensus 408 ~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 458 (968)
.. ...-...+++.++++++|.+.+..++.+
T Consensus 490 ~~---------------------he~vl~ille~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 490 KK---------------------HEWVLDILLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred cc---------------------CHHHHHHHHHHhcCHHHHHHHHhcCCHH
Confidence 21 1112234455667888888888887754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.4 Score=41.56 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH
Q 040643 770 TLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 770 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
.+...+...|..+.|+.+++.++.--| ++..-...+.+++++|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 344556777888888888888888777 45556677788899998888865
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.2 Score=53.27 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEE
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSI 845 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~ 845 (968)
.+...|...+.+.+++..|..-.+++++++|+|.-+.+.-+.+|...|.+++|....+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 345566666778889999999999999999999999999999999999999999987766542
Q ss_pred EEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 040643 846 HAFFVGDRLHPLADKIYDYLGNLNRRVAE 874 (968)
Q Consensus 846 ~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 874 (968)
.|...+|...|..|..++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 37778899999988888875
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.2 Score=43.87 Aligned_cols=88 Identities=24% Similarity=0.229 Sum_probs=69.9
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC----cchHHHHHHHHhhcCCc
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPED----SATYVLLSNIYAAAGKW 815 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~----~~~~~~l~~~y~~~g~~ 815 (968)
++..+|++++|++.|.+. -+-| .+++|+.-..++|..|+.+.|..-.++++++.-+. ...|+.-+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788888888888776 3333 47788889999999999999999999999986443 24789999999999999
Q ss_pred chHHHHHHHHHhCC
Q 040643 816 DCRDQIRQIMKDRG 829 (968)
Q Consensus 816 ~~a~~~~~~m~~~g 829 (968)
|+|..-.+..-+-|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99988766665544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.18 Score=47.21 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHh----hhhcCCCCCcch
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESM----STEYGLVPKPEH 735 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m----~~~~~i~p~~~~ 735 (968)
....++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+ .+++|++|+.++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455566666777777777777766 555 3456666777777777777777666654 335677777543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.30 E-value=1.1 Score=41.52 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhc-CChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040643 696 NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRA-GCLSRAREFTEQMPIEPDAMVWRTLLSA 774 (968)
Q Consensus 696 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~-G~~~eA~~~~~~m~~~p~~~~~~~ll~~ 774 (968)
+......++..|...+.++++..++..+.. |...++.+... ++.+.|.+++.+ ..+...|..++..
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~---~~~~~lw~~~~~~ 134 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK---QNNPELWAEVLKA 134 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 444555677777777877777777766521 33344444444 777778877776 2356677777766
Q ss_pred HH
Q 040643 775 CR 776 (968)
Q Consensus 775 ~~ 776 (968)
|.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.31 Score=51.32 Aligned_cols=127 Identities=12% Similarity=0.088 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHH---hhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-----CC---CCCH
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFES---MSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-----PI---EPDA 765 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-----~~---~p~~ 765 (968)
..|..|.+.|.-.|+++.|+.+.+. +.++||-... ...|+.+...+.-.|+++.|.+.++.. .+ .-.+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566777777778888888876543 3445565443 456777888888888888888877754 11 1224
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcc----C--CCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLEL----E--PEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
..--+|.+.+-...+++.|+....+-+.+ + -...-++..|+|.|...|..+.|...-..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44456777777777788887766654443 2 23455778889999999988888775443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.33 Score=48.55 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=81.8
Q ss_pred HHHHHHhcCC--CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc---------
Q 040643 649 DAKREFLEMP--EKNEVSWNAMITGFSQH-----GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL--------- 712 (968)
Q Consensus 649 ~A~~~f~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~--------- 712 (968)
-.++.|..+. ++|-.+|-+++.-+..+ ++.+---..++.|.+-|+.-|-.+|..||+.+=+...
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456777777 77889999999888765 4566666778899999999999999999998755432
Q ss_pred -------HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChH
Q 040643 713 -------VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 713 -------~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~ 750 (968)
-+=|+.++++| +.+|+.|+.+.-..++.++||.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 23378899999 67899999999999999999998753
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.03 E-value=15 Score=42.73 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=33.2
Q ss_pred hhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHH
Q 040643 351 IVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLS 398 (968)
Q Consensus 351 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 398 (968)
.++..+|+.+.-.|++++|-...-.|...+..-|.--+.-+...++..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 345666777777788888888887777777777766666665555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.46 Score=51.96 Aligned_cols=113 Identities=7% Similarity=0.029 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhh---------cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 040643 712 LVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGR---------AGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK 779 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r---------~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 779 (968)
..+.|..+|.+......+.|+ ...|.++...+.. .....+|.++.++. .+.|+ +.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 357788899988755577888 6667666554322 22345677777665 55665 555555555566777
Q ss_pred ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 780 NMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 780 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+.+.|...+++++.++|+.+.+|...+++.+-+|+.++|.+..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999885443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.069 Score=43.66 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMK 689 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~ 689 (968)
+++.+...|...|++++|+..|++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555544
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.47 Score=48.62 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
|...|-.|...|..+|++..|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344444444444444444444444444444
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.59 E-value=2.8 Score=37.22 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=82.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA 752 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA 752 (968)
...|..++..++..+...+. +..-++-++---..+-+-+--.+.++++-+-|.+.|-. ..-.+|..+.+.|...|=
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHHH
Confidence 45677778888887776521 22223333332223334445556666665555555532 233455666666655443
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 753 REFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 753 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
. ..-|++....|.-+.-+.+...+++.+..+|...+-+++.|.+.|.-.++.++++..-++|++
T Consensus 89 v---------------D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 V---------------DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp H---------------HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred H---------------HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2 234666778888899999999998877778999999999999999999999999988888875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.50 E-value=2.7 Score=41.87 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCc---chHHHHHHHHhhcCCcchHHH
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDS---ATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~ 820 (968)
-+...|+..-|..-++.+++--|+.. .+...|...|.+.|.-+.+..
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 36678889999999999999999765 355678888999998874443
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=93.49 E-value=11 Score=40.95 Aligned_cols=208 Identities=15% Similarity=0.187 Sum_probs=138.4
Q ss_pred cCCHHHHHHHHhcCC----CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHcccCcHH
Q 040643 644 CGSIDDAKREFLEMP----EKNEVSWNAMITGFS-QHGYALEAINLFEKMKKHDVMPNH----VTFVGVLSACSHVGLVN 714 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~ 714 (968)
.|+-++|.+.+..+. .+....+-+|+.+-. ...++.+|+++|++..- ..|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 689999999999887 345667777777654 45589999999999887 67753 24444555678899999
Q ss_pred HHHHHHHHhhhhcCCCCCcchHH-HHHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 715 EGLRYFESMSTEYGLVPKPEHYA-CVVDLLGRAG---CLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 715 ~a~~~~~~m~~~~~i~p~~~~y~-~lv~~l~r~G---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
++..+-..-.+.|.-.|=...+. -++.++.+.+ ..+.-.+++..|+-+--..+|..+...-.+.|+.++|..++++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888877777777777644443 3344444433 3334344555553222266777788888899999999999999
Q ss_pred HHccCCCCcchHHHHHHHHhhcCCc--chHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHHHHHH
Q 040643 791 LLELEPEDSATYVLLSNIYAAAGKW--DCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNL 868 (968)
Q Consensus 791 ~~~l~p~~~~~~~~l~~~y~~~g~~--~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 868 (968)
++.+.+ ....-...+++|..+-+. +++....+.++.- ..++.+|+-..+.+.-..+
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I---------------------~~~~L~~~Dr~Ll~AA~~v 340 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI---------------------DRDKLSERDRALLEAARSV 340 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC---------------------ChhhCChhhHHHHHHHHHH
Confidence 999984 455556677777765442 3344444444331 1234556666666655556
Q ss_pred HHHHHHc
Q 040643 869 NRRVAEI 875 (968)
Q Consensus 869 ~~~~~~~ 875 (968)
..++++.
T Consensus 341 a~~V~~~ 347 (421)
T PRK12798 341 ARQVRRA 347 (421)
T ss_pred HHHHhcC
Confidence 5665543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.36 E-value=9.5 Score=38.16 Aligned_cols=193 Identities=19% Similarity=0.165 Sum_probs=124.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHh-CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--CC-HHHHHHHHH-HHHh
Q 040643 600 GSVVSAAANLANIKQGKQVHAMIIKT-GYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--KN-EVSWNAMIT-GFSQ 674 (968)
Q Consensus 600 ~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d-~~~~~~li~-~~~~ 674 (968)
..........+....+.......... ........+..+...+...+..+.+.+.+..... ++ ...+..... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33333444444444444444443332 2233444455555666666667777777776552 22 122333333 6788
Q ss_pred cCCHHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCC
Q 040643 675 HGYALEAINLFEKMKKHDVMP----NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGC 748 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~P----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~ 748 (968)
.|+.++|...|++... ..| ....+......+...+..+++...+...... .|. ...+..+...+...|+
T Consensus 143 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 143 LGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred cCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHccc
Confidence 8889999998888865 444 2234444444567788889998888877543 333 5667778888888889
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 749 LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 749 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+++|...+... ...|+ ...+..+...+...++.+.+....++.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999888776 44555 555666666666667799999999999999997
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.25 E-value=15 Score=39.97 Aligned_cols=144 Identities=13% Similarity=0.187 Sum_probs=67.9
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH-HHHHH
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP-----EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFV-GVLSA 706 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~-~ll~a 706 (968)
++-.+++.--+..-++.|+.+|-+.. .+++..++++|.-+++ |+..-|..+|+--+. ..||...|. -.+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHH
Confidence 33344444444444555555554433 2344455555544433 444455555554333 344433322 23333
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHK 779 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g 779 (968)
+..-++-+.|+.+|+.......-.--...|.-|++-=..-|++..|..+=++| ...|...+....++-+.+..
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 44455566666666643322111111344666666666667777777666666 34444444444444444433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.71 Score=51.70 Aligned_cols=131 Identities=18% Similarity=0.266 Sum_probs=84.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCCh
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCL 749 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~ 749 (968)
...+|+.+++.+....-. +-|. ..-...++.-+.+.|..+.|+++-+.-.. -.++....|++
T Consensus 271 av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 345566776655553111 1221 22355666667777888888776543322 24677789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 750 SRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 750 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
+.|.+..++.+ +...|..|...+-.+||++.|+.++++. ..+..|+-+|...|+-+.-.++-+.-+.+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999887754 7889999999999999999999999985 445678889999999766666655555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.76 Score=41.40 Aligned_cols=94 Identities=14% Similarity=0.231 Sum_probs=62.8
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG 711 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 711 (968)
.++.+++-++++.|+++....+.+..=.-| +.+-...+. --......|+..+..+++.++...|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~-------~~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGID-------VNGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCC-------CCCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 455566666666666666666655432111 111111111 1112346789999999999999999
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
++..|.++.+...+.|+|+-....+..|..
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999998888777777764
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.06 E-value=7.3 Score=41.04 Aligned_cols=132 Identities=8% Similarity=0.086 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhc--------CCcCCc-----chHHHHHHHHhhhhh---HHHHHHHHHHHHHhCC
Q 040643 564 WNGLISGFAQSGYCEGALQVFSQMTQV--------GVQANL-----YTFGSVVSAAANLAN---IKQGKQVHAMIIKTGY 627 (968)
Q Consensus 564 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~-----~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g~ 627 (968)
||.-.+.+.+..++++|..++++..+- ...|+. .++..+..++...+. .+++..+.+.+.+ .+
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~ 117 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES-EY 117 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hC
Confidence 444444444443666666665554321 122332 334455556655554 3445555555533 22
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-CC--CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCh
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMP-EK--NEVSWNAMITGF---SQHGYALEAINLFEKMKKHDVMPNH 697 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~--d~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~Pd~ 697 (968)
+..+.++-.-+....+.++.+++.+++.+|. .. ....|..++..+ ..+ ....|...+++++...+.|..
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 3334444444566666788888888888776 22 234555555554 333 345667777776665555543
|
It is also involved in sporulation []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.11 Score=42.50 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=14.2
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
++..+...+...|++++|+.+|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555666666666666666554
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=12 Score=37.85 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcc---hHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSA---TYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.-+..+|...-|..-++.+++--|+.+. .+..|-++|...|..++|.+..+.+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 4467788888888888888888776554 4556778899999999999999988653
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.72 E-value=2.1 Score=47.05 Aligned_cols=219 Identities=15% Similarity=0.056 Sum_probs=113.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChH---
Q 040643 674 QHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLS--- 750 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~--- 750 (968)
+..+.+.-+++-++.++ +.||-.+-..+| |--.+.-+.|+.++|++..+.-. ..|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE------------~~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE------------ASLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH------------Hhhchhhhhhccc
Confidence 44566677777777777 778765544333 23345557788888876644200 0111111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 751 RAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE--DSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 751 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
...+.+.+-...|-..+=..|...+++.|..++|.+.++.+++..|. +-+.+..|.+.|-..+++.|+..+..+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111222123333444455666667777777777777777776664 4456677777777777777777776655443
Q ss_pred CCccCCcccEEEEcCEEEEE-ecCCCCCcc-------hHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhhccc-chh
Q 040643 829 GVKKEPGQSWIEVKNSIHAF-FVGDRLHPL-------ADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPC-VYI 899 (968)
Q Consensus 829 g~~k~~g~s~i~~~~~~~~f-~~~d~~h~~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 899 (968)
...|....+|-.. .-.| .+||+.-|+ +......++-+.+-++.--+||+--.-.-.+.-. -|.+ -..
T Consensus 325 ~lpkSAti~YTaA---LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrG 400 (539)
T PF04184_consen 325 SLPKSATICYTAA---LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRG 400 (539)
T ss_pred cCCchHHHHHHHH---HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCC
Confidence 3333332222110 0000 123433332 2233456777888888777887522211111100 1122 233
Q ss_pred ccHHHHHHHHhh
Q 040643 900 HSEKLAIAFGLL 911 (968)
Q Consensus 900 hse~la~~~~~~ 911 (968)
-||-+|.||--+
T Consensus 401 DSEAiaYAf~hL 412 (539)
T PF04184_consen 401 DSEAIAYAFFHL 412 (539)
T ss_pred cHHHHHHHHHHH
Confidence 488877777654
|
The molecular function of this protein is uncertain. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.51 E-value=0.61 Score=49.22 Aligned_cols=255 Identities=13% Similarity=0.136 Sum_probs=154.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC---CChhhHHHHHHHhhcccchhhhhhhhHhhhhh----cCC-CCchhhhhHHHHH
Q 040643 469 GFVQHGMFGEALELFEEMENQGIQ---SDNIGFSSAISACAGIQALNQGRQIHAQSYIS----GFS-DDLSIGNALISLY 540 (968)
Q Consensus 469 ~~~~~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~Li~~y 540 (968)
-+++.|+....+.+|+..++-|.. .=+..|+.+-+|+.-++++++|.+.|..=+.. |-. ........|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 367889999999999999887632 12334556667788888999999988653221 111 1122223344555
Q ss_pred HHcCCHHHHHHHHH-h------CCCC--CcccHHHHHHHHHhcCC--------------------hhhHHHHHHHhh---
Q 040643 541 ARCGRIQEAYLVFN-K------IDAK--DNISWNGLISGFAQSGY--------------------CEGALQVFSQMT--- 588 (968)
Q Consensus 541 ~k~g~~~~A~~~f~-~------m~~~--d~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~--- 588 (968)
--.|.+++|...-. . +-.+ ...++..+...|...|+ ++.|.+.|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 55667776654322 1 1111 12234445555554443 123344443311
Q ss_pred -hcCCc-CCcchHHHHHHHHhhhhhHHHHHHHHHHHHH----hCCC-CChhHHhHHhhHHHhcCCHHHHHHHHhcCC---
Q 040643 589 -QVGVQ-ANLYTFGSVVSAAANLANIKQGKQVHAMIIK----TGYD-SETEASNSLITLYAKCGSIDDAKREFLEMP--- 658 (968)
Q Consensus 589 -~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--- 658 (968)
..|-. .--..|..+-+.+.-+|+++.+...|+.-+. .|-. .....+..|.+.+.-.|+++.|.+.++...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11111 1113344455555567889999988865432 2321 234466778888889999999999887643
Q ss_pred ----CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCChHHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 659 ----EKN--EVSWNAMITGFSQHGYALEAINLFEKMKK----HD-VMPNHVTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 659 ----~~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
++. ..+.-+|.+.|..-..+++|+.++.+=+. .+ ..-....+.+|..++...|..++|+.+.+.-
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 333 34566788888888899999998877443 11 1223457889999999999999999887654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.77 Score=46.53 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH----VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
.|+.-+.. .+.|++.+|...|...++. -|+. ..+.-|..++...|++++|..+|..+.++|+-.|. ++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 46655544 4667899999999999984 4542 24666888999999999999999999999988888 588888
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 040643 739 VVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m 759 (968)
++..+++.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999998887776
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.21 E-value=21 Score=39.07 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=59.2
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 751 RAREFTEQMPIEP----DAMVWRTLLSA--CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 751 eA~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+-+.++++.++.| +..+-+-|..| ...+|++..+.-.+.-+.++.| ++.+|-+++-......+++||..+...
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3455666665555 34455666666 5789999999999999999999 999999999999999999999988764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.14 E-value=1.4 Score=50.16 Aligned_cols=184 Identities=15% Similarity=0.287 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc----------chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhH
Q 040643 564 WNGLISGFAQSGYCEGALQVFSQMTQVGVQANL----------YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEA 633 (968)
Q Consensus 564 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 633 (968)
-..|+-.|....+++..+++.+.++.- ||. +.|...|+-=-+-|+-++|..+.--+++..-+.
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v---- 276 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV---- 276 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC----
Confidence 345566677777788778887777653 321 334445555556677788877755554422111
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHccc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV---TFVGVLSACSHV 710 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~---t~~~ll~a~~~~ 710 (968)
.-+|||-||++=+ .|- +-+.|-..+..+.|++.|++.-+ +.|+.. -+..||.|-.+.
T Consensus 277 ---apDm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 277 ---APDMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred ---CCceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh
Confidence 1257888886532 221 12334455566778888888887 888754 344454442211
Q ss_pred CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 711 GLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
++...++ +.+ | -.+-.+++|.|.+++-.++++- ...+++-...+|...|.+++++
T Consensus 337 --Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 337 --FENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred --ccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHH
Confidence 1111111 111 1 1244688999999988887753 3677888889999999999999
Q ss_pred HHccCCCCc
Q 040643 791 LLELEPEDS 799 (968)
Q Consensus 791 ~~~l~p~~~ 799 (968)
+++|.|..-
T Consensus 392 mfKLk~P~W 400 (1226)
T KOG4279|consen 392 MFKLKPPVW 400 (1226)
T ss_pred HhccCCcee
Confidence 999998643
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.07 E-value=2.6 Score=43.26 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=75.6
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCChh
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLL---SACRVHKNME 782 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll---~~~~~~g~~~ 782 (968)
....|+..++...|...... .|+ .+.-..|..+|..+|+.++|..++..+|.+-...-|..|- .......+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556666666666655432 233 4555667778888888888888888887665544444411 1122222222
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH-HHHHHHh
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ-IRQIMKD 827 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~ 827 (968)
.. ...+.-+.-+|+|...-+.|+..|...|+.++|.+ +...|+.
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 23345566799999999999999999999999987 4555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.39 Score=31.46 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
.+|..+...+...|+++.|....+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777888888888888888888888865
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.3 Score=32.16 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
.+|..+...+...|+++.|+...+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467777888888888899999999999988864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=91.38 E-value=8.2 Score=35.62 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhc
Q 040643 321 LVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKC 363 (968)
Q Consensus 321 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 363 (968)
++..+...+........+..+++.+ ..+....|.++.+|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3333333344444444444444444 24444556666666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=91.21 E-value=8.1 Score=38.45 Aligned_cols=68 Identities=26% Similarity=0.242 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN----HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK 732 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~ 732 (968)
..+-.....+...|++.+|++.|+++... -|+ ......+..++...|++++|...|+...+.|.-.|.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 34445566677889999999999999873 443 234667778888999999999999988887655554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.87 E-value=1.3 Score=50.45 Aligned_cols=153 Identities=14% Similarity=0.043 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChH------HHHHHHH-HHcc---cCcHHHHHHHHHHhhhhcCCCCCc
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHD-VMPNHV------TFVGVLS-ACSH---VGLVNEGLRYFESMSTEYGLVPKP 733 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~------t~~~ll~-a~~~---~g~~~~a~~~~~~m~~~~~i~p~~ 733 (968)
...++...+-+|+-+.+++++.+..+.+ +. .+. +|..++. .+.. ....+++.++++.+.+.| |+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 4456667777788888888888766532 11 111 2222232 2222 456677777777776553 553
Q ss_pred chHH-HHHHHHhhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-chHHHH
Q 040643 734 EHYA-CVVDLLGRAGCLSRAREFTEQMP-IEP-----DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS-ATYVLL 805 (968)
Q Consensus 734 ~~y~-~lv~~l~r~G~~~eA~~~~~~m~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l 805 (968)
..|- --..++...|++++|.+.+++.- .+. ....+--+...+....|.+.|...+.++.+...-.. -+++..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3332 23355666777777777777541 111 112222333445556677777777777777655433 334455
Q ss_pred HHHHhhcCCcchHHHH
Q 040643 806 SNIYAAAGKWDCRDQI 821 (968)
Q Consensus 806 ~~~y~~~g~~~~a~~~ 821 (968)
+-.|...|+-+++.+.
T Consensus 347 a~c~~~l~~~~~~~~~ 362 (468)
T PF10300_consen 347 AACLLMLGREEEAKEH 362 (468)
T ss_pred HHHHHhhccchhhhhh
Confidence 5666677776555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=90.48 E-value=3.5 Score=43.18 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=10.9
Q ss_pred cccCChhhHHHHHHHHh
Q 040643 925 LRVCNDCHNWIKFVSKI 941 (968)
Q Consensus 925 ~r~c~dch~~~k~~s~~ 941 (968)
-|-|..|. |++|.+
T Consensus 405 ~rsCP~Cr---klrSs~ 418 (518)
T KOG1941|consen 405 TRSCPNCR---KLRSSM 418 (518)
T ss_pred CCCCccHH---HHHhhc
Confidence 57899997 888844
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.41 E-value=30 Score=37.67 Aligned_cols=67 Identities=9% Similarity=0.143 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHhhccccC
Q 040643 246 SSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDG---VTYNSLISGLAQCGYSDKALELFEKMQLDCLK 312 (968)
Q Consensus 246 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 312 (968)
+.|..+|-.||.-|...|..++.++++++|..|-. ..|..-|++-....++.....+|.+-+.....
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 45677888888888888888888888888877643 36777777777777777777777776655444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.06 E-value=2.4 Score=42.68 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=80.9
Q ss_pred HHHHHhhCC--CCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHh
Q 040643 369 AYKFFLTTE--TENVVLWNVMLVAYGQL-----NDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQ 441 (968)
Q Consensus 369 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 441 (968)
.++.|...+ ++|-.+|-+++..+... +.++-....++.|.+-|+.-|..+|..||..+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------- 121 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------- 121 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc-----------
Confidence 455666666 56778888888887654 567878888999999999999999999987654411
Q ss_pred hCChHHHHHHHhhCCCCCceeHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccc
Q 040643 442 LGNLNTAQEILRRLPEDDVVSWTAMIVGFVQH-GMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQA 510 (968)
Q Consensus 442 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 510 (968)
...-|.+-..|..- .+-+-+++++++|...|+.||..+-..+++++.+.+.
T Consensus 122 ------------------fiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 122 ------------------FIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------------------cccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11122222223322 2335688999999999999999998888888877654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.75 E-value=50 Score=39.16 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHH----HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccC
Q 040643 153 PLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMI----SGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIE 228 (968)
Q Consensus 153 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 228 (968)
.-+.+..+-.-++.|..+-..-..+ ...-..+. +-+-+.|++++|...|-+-... +.| ..+++-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 3455555666666666665543221 22222222 2344688999998888775432 233 34555555555
Q ss_pred chHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcc--cHHHHHHHHHcCCChhHHHHH
Q 040643 229 LFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGV--TYNSLISGLAQCGYSDKALEL 302 (968)
Q Consensus 229 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l 302 (968)
....--.+++.+.+.|+... .--+.|+.+|.|.++.+.-....+... .... -....+..+.+.+-.++|..+
T Consensus 412 ~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 55555666677777775432 334667888888888877777766655 2211 133344444444444444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.70 E-value=5.4 Score=36.48 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHccCCCCc
Q 040643 781 MEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~~~ 799 (968)
+..|...++.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 3455556666666666543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.66 E-value=3.4 Score=44.29 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
+..+.-.+.+.+++.+|.+..++. .++|+ .-..--=..+|...|+++.|+..++++++++|+|-.+...|+.+-.+..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 444555666777777777666665 44443 3333333456778899999999999999999999999999988877777
Q ss_pred CcchH-HHHHHHHH
Q 040643 814 KWDCR-DQIRQIMK 826 (968)
Q Consensus 814 ~~~~a-~~~~~~m~ 826 (968)
+..+. .++++.|=
T Consensus 340 ~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 340 EYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHh
Confidence 77666 45777773
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.65 E-value=7 Score=43.17 Aligned_cols=102 Identities=12% Similarity=0.186 Sum_probs=66.5
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCC--HHHHHHHHHHHH
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMP-I-EPD--AMVWRTLLSACR 776 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~-~p~--~~~~~~ll~~~~ 776 (968)
..+...+-+.|..+||.+.|+.|.+++...-.......++..|...+.+.|+..++.+-. + .|. ...|.+.|-..|
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345556667888888888888887765322234445568888888888888888888863 2 344 344444443444
Q ss_pred hcCCh---------------hHHHHHHHHHHccCCCCcchH
Q 040643 777 VHKNM---------------EIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 777 ~~g~~---------------~~a~~~~~~~~~l~p~~~~~~ 802 (968)
.-++. ..|.++..++++.+|.-+.+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 43431 234578899999999766443
|
The molecular function of this protein is uncertain. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.61 E-value=11 Score=36.72 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=104.2
Q ss_pred HHhcCCHHHHHHHHhcCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHH
Q 040643 641 YAKCGSIDDAKREFLEMP--EKN-EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~--~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a 716 (968)
|-..|-+.-|+--|.... .|+ +..+|-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++.-.|.+.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 444455555665555543 343 45677777777778888888888888777 5664 44555555566677888777
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccC
Q 040643 717 LRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHK-NMEIGEYAANHLLELE 795 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~ 795 (968)
.+=|... |.-.|+-..-+...-+-.+.=+..+|..-+.+-...-|..-|+.-+-.+..-+ ..+. ..+++.+-.
T Consensus 153 q~d~~~f---YQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a 226 (297)
T COG4785 153 QDDLLAF---YQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEET---LMERLKADA 226 (297)
T ss_pred HHHHHHH---HhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHH---HHHHHHhhc
Confidence 7766544 33344432222223333344456666644333333455667777665543221 1111 112222211
Q ss_pred CCC-------cchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 796 PED-------SATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 796 p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.++ +.+|.-|+.-|-..|..++|..+.|....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 121 35789999999999999999999887643
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.24 E-value=2.5 Score=40.37 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=64.6
Q ss_pred HHHhhcCChHHHHHHHHhC----CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 741 DLLGRAGCLSRAREFTEQM----PIEPD---AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m----~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
.-+...|++++|.+-+... |--|. .+.|..-..+..+.+..+.|...+.++++|.|.+--+.+.-+-+|....
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455567777776655544 21111 3334444444567788999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhC
Q 040643 814 KWDCRDQIRQIMKDR 828 (968)
Q Consensus 814 ~~~~a~~~~~~m~~~ 828 (968)
++++|.+-.+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999988877664
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.9 Score=44.62 Aligned_cols=109 Identities=18% Similarity=0.102 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCCh
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCL 749 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~ 749 (968)
-|.+.|.+++|+..|..-+. +.| |.+++..-..||.+...+..|..=.+....- -...+.+|.|.|.-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHHH
Confidence 45566666666666666555 566 6666666666666555444333222211100 01123344443332
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 750 SRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 750 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
-...|+.++|..-++.+++|+|++- -|-.+|+...-..|+.
T Consensus 175 -------------------------R~~Lg~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 175 -------------------------RESLGNNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERK 215 (536)
T ss_pred -------------------------HHHHhhHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhh
Confidence 2334667788888889999999854 3444455444444443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.15 E-value=0.12 Score=48.23 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=61.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHH
Q 040643 320 SLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSE 399 (968)
Q Consensus 320 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 399 (968)
.++..+.+.+.+.....++..+.+.+...+..+.+.|+.+|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566666777777777777777777667788999999999999888888888874433 333466777777788877
Q ss_pred HHHHHHHHH
Q 040643 400 SFQIFKQMQ 408 (968)
Q Consensus 400 A~~l~~~m~ 408 (968)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.10 E-value=38 Score=41.73 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred CChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhh----hccCCchhhhHHHH
Q 040643 364 SDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRT----CTSLGALSLGEQIH 439 (968)
Q Consensus 364 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a----~~~~~~~~~~~~~~ 439 (968)
+++++|..-+..+. ...|.-.+.---+.|.+.+|+.++ .|+...+..+..+ |.....++.|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 55666666665554 334555556666777778877773 4666655555543 45567778888888
Q ss_pred HhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHH
Q 040643 440 TQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEME 487 (968)
Q Consensus 440 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 487 (968)
...|++++|. .+|..+|+|.+|+.+-.+|-
T Consensus 963 e~~GklekAl------------------~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 963 ERCGKLEKAL------------------KAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred HHhccHHHHH------------------HHHHHhccHHHHHHHHHhhc
Confidence 8888888875 45566788888888887764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.6 Score=40.89 Aligned_cols=83 Identities=11% Similarity=-0.036 Sum_probs=53.3
Q ss_pred HhcCCHHHHHHHHhcCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHH
Q 040643 642 AKCGSIDDAKREFLEMP--E-KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLR 718 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~--~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 718 (968)
-..|++++|..+|.-+. . -|..-|..|..+|-..|++++|+..|......+ .-|+..+......+...|+.++|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 35677777777777543 2 355567777777777777777777777766532 1234455556666666777777777
Q ss_pred HHHHhhh
Q 040643 719 YFESMST 725 (968)
Q Consensus 719 ~~~~m~~ 725 (968)
.|.....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7766543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.97 E-value=27 Score=35.39 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN----HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYA 737 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~ 737 (968)
+..|-.=+..-.+.|++++|.+.|+.+... .|. .-+-..++.|.-+.|++++|+..+++..+.|+-.|+++ |.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HH
Confidence 334444455556788888899888888863 342 34667777788888888888888888888877777755 44
Q ss_pred HHHHHHh
Q 040643 738 CVVDLLG 744 (968)
Q Consensus 738 ~lv~~l~ 744 (968)
--+.++.
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 3333333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.76 E-value=3.1 Score=43.05 Aligned_cols=159 Identities=11% Similarity=-0.008 Sum_probs=104.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH----HHHHhhcCCh
Q 040643 674 QHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV----VDLLGRAGCL 749 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l----v~~l~r~G~~ 749 (968)
-+|+..+|-..++++++. .+.|-..+...=.+|.-.|..+.-...++++.. .-.|+...|.-+ .-.|...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999883 444667788888899999999888888887643 235666555443 3345578888
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 750 SRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE----DSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 750 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
++|++.-++. .+.|. .-.-.++.......|+...|.+...+--..=.+ -+.+|-..+-.|.+.+.++.|.++..
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887776 55554 333345556667778888887776654332111 12344455556677788888888754
Q ss_pred HHHhCCCccCCc
Q 040643 824 IMKDRGVKKEPG 835 (968)
Q Consensus 824 ~m~~~g~~k~~g 835 (968)
.=--+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 333333455544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.64 E-value=1.6 Score=39.77 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=44.5
Q ss_pred HHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 742 LLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
...+.|++++|.+.++.+ |..|= ..+-..|+.++...|+++.|...+++.++|+|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344567777777777665 44443 344456788899999999999999999999998764
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.44 E-value=29 Score=36.69 Aligned_cols=135 Identities=13% Similarity=0.242 Sum_probs=76.8
Q ss_pred hhHHHHHHHhhhcCCcCCcchHHHHHHHHhh------hhhHHHHHHHHHHHHHhCC---CCChhHHhHHhhHHHhcCCHH
Q 040643 578 EGALQVFSQMTQVGVQANLYTFGSVVSAAAN------LANIKQGKQVHAMIIKTGY---DSETEASNSLITLYAKCGSID 648 (968)
Q Consensus 578 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~------~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~k~g~~~ 648 (968)
++.+.+++.|.+.|++-+..+|.+.+..... ......++.++..|.+... .++-.++.+|+.+ ...+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4456778888888888888777654433222 1235556666666666432 1122222222211 111111
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHH-HcccCc--HHHHHHHHHHhh
Q 040643 649 DAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSA-CSHVGL--VNEGLRYFESMS 724 (968)
Q Consensus 649 ~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a-~~~~g~--~~~a~~~~~~m~ 724 (968)
+ ..+++...|+.+.+.|+..+ ...+.+-+-+ +.-... +....++++.+.
T Consensus 157 ~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 157 E---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred H---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 1 13456778888888888775 4344444333 332222 457788888886
Q ss_pred hhcCCCCCcchHHHHHHH
Q 040643 725 TEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 725 ~~~~i~p~~~~y~~lv~~ 742 (968)
+. |+++...||..++=+
T Consensus 210 ~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 210 KN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred Hc-CCccccccccHHHHH
Confidence 65 999999998876543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.42 E-value=9.5 Score=35.65 Aligned_cols=93 Identities=19% Similarity=0.145 Sum_probs=60.2
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMP-IEPDAMVWRTLLSACRVH 778 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~ 778 (968)
..+++.-.+.++.+++..++..+. -+.|. .++-.+-+-++.+.|++++|..++++.. -.|....-.+|+..|-..
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 334444556667777777777774 34666 4444555666778888888888888873 334455556778777665
Q ss_pred CChhHHHHHHHHHHccCC
Q 040643 779 KNMEIGEYAANHLLELEP 796 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p 796 (968)
..-..=...++.+++..|
T Consensus 91 ~~D~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGA 108 (160)
T ss_pred cCChHHHHHHHHHHhcCC
Confidence 544444556777777766
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.92 E-value=39 Score=35.56 Aligned_cols=203 Identities=8% Similarity=0.004 Sum_probs=97.3
Q ss_pred CcccHHHHHHHHHhcCCh----hhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH--HHHHHHHHHHHhCCCCChhH
Q 040643 560 DNISWNGLISGFAQSGYC----EGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK--QGKQVHAMIIKTGYDSETEA 633 (968)
Q Consensus 560 d~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~a~~~~~~~~~~g~~~~~~~ 633 (968)
|...-..-+.++.+-|+. ++++.++..+... .|+...-...+.+....+.-. ........+...-..++..+
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~V 144 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNV 144 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHH
Confidence 333333344455555542 3455555555322 344444444444444332111 01112222222223345556
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHG-YALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL 712 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 712 (968)
-...+..+++.|+.+....+..-+..+|...-..-+.+++..+ ...++...+..++. .+|...-...+.+....|.
T Consensus 145 R~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 145 RFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 6666666777776433333333344555544444455555443 23456666666663 4566666666666666666
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSAC 775 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~ 775 (968)
.++...+-...+. ++ .....+.+++.-|.- +|...+.++ .-.||..+-..-..+|
T Consensus 222 -~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 222 -KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred -hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 4455555544332 11 123456666766663 566655555 2345555544444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.79 E-value=1.6 Score=30.74 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 698 (968)
.+|..+...|...|++++|+++|++.++ ..||..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 3577788888888999999999998888 678754
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.78 E-value=1.7 Score=32.09 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=27.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 771 LLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 771 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
|.-++.+.|+.+.|.+..+.+++++|+|..+-.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 44567889999999999999999999988665554
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.45 E-value=1.2 Score=29.08 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 696 (968)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4678888888888888899988888888 6665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.17 E-value=34 Score=35.44 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=100.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhc
Q 040643 668 MITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRA 746 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~ 746 (968)
........|+..+|..+|..... ..|+ ...-..+..++...|++++|..++..+-.+.. .........=+.++.++
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQA 216 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHH
Confidence 34456778999999999999988 5564 45667778888999999999999987743211 01111123456778888
Q ss_pred CChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc--CCCCcchHHHHHHHHhhcCCcchH-HHHH
Q 040643 747 GCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLEL--EPEDSATYVLLSNIYAAAGKWDCR-DQIR 822 (968)
Q Consensus 747 G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a-~~~~ 822 (968)
....+..++..+..-.|+ ...--.|...+...|+.|.|..-.=.+++. .-+|.+.--.|..++..-|.-|.+ .+.|
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 888877777777766674 444445555677777777665544444443 234566666677777766655443 3345
Q ss_pred HHH
Q 040643 823 QIM 825 (968)
Q Consensus 823 ~~m 825 (968)
++|
T Consensus 297 RkL 299 (304)
T COG3118 297 RKL 299 (304)
T ss_pred HHH
Confidence 554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.81 E-value=4.9 Score=40.89 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=62.8
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCC
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVHKN 780 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~ 780 (968)
+..+|++.+|..-|....+.|--.+- ...+--|...+.+.|++++|...+..+ |-.|- +...--|.-.....||
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 45677788888888888777633222 455666778888888888887776655 43333 2333344444566777
Q ss_pred hhHHHHHHHHHHccCCCCcch
Q 040643 781 MEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.+.|....+.+++--|+.+.+
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHH
Confidence 788888888887777766543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=86.59 E-value=38 Score=35.86 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=50.7
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhh-cCCcCCc---chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-----CChhH
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQ-VGVQANL---YTFGSVVSAAANLANIKQGKQVHAMIIKTGYD-----SETEA 633 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~ 633 (968)
+|-.+-.++-+--++.+++.+-+.-.. .|..|.. ....++-.|...++.++++.+.|+.+.+.--. ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555554455555554333222 2333311 22234555666677788888887777663221 23557
Q ss_pred HhHHhhHHHhcCCHHHHHHH
Q 040643 634 SNSLITLYAKCGSIDDAKRE 653 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~ 653 (968)
+-+|...|+...++++|.-.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhh
Confidence 77888888888887776544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.99 E-value=3.4 Score=42.68 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=59.7
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChHHHHH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKK-----HDVMPNHVTFVG 702 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~Pd~~t~~~ 702 (968)
..++..++..+..+|+.+.+.+.+++.. .-|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3456778889999999999999998876 33778999999999999999999999998876 466666555444
Q ss_pred HHH
Q 040643 703 VLS 705 (968)
Q Consensus 703 ll~ 705 (968)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.99 E-value=17 Score=40.92 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeH
Q 040643 384 WNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSW 463 (968)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 463 (968)
.+.++.-+-+.|..+.|+++-.+- +.-.++.-.+|+++.|.++.+... +...|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~-------------------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W 350 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP-------------------------DHRFELALQLGNLDIALEIAKELD--DPEKW 350 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H-------------------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh-------------------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHH
Confidence 566666666777777777663322 122233334477777777665554 55689
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhh
Q 040643 464 TAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYI 523 (968)
Q Consensus 464 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 523 (968)
..|.....+.|+.+-|.+.|++... |..++--+...|+.+.-+++-.....
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999988654 33444444444444444444444333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.42 E-value=6.3 Score=34.94 Aligned_cols=85 Identities=18% Similarity=0.081 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCC
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGC 748 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~ 748 (968)
.+..|+.+.|++.|.+.+. +-|. ...|+.-..++.-+|+.++|++=+++..+--|-... -..|.--.-+|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3444555555555555544 3442 334555555555555555555444444332222211 1112222334555666
Q ss_pred hHHHHHHHHh
Q 040643 749 LSRAREFTEQ 758 (968)
Q Consensus 749 ~~eA~~~~~~ 758 (968)
.+.|..-|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 6666655544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.31 E-value=24 Score=36.17 Aligned_cols=55 Identities=13% Similarity=-0.053 Sum_probs=49.7
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.+|...|++..|....++++.++|-+...+-.|-++|+..|+--+|.+-++.|.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4588999999999999999999999999999999999999998888887777643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.11 E-value=1.9 Score=28.80 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777788888888888888887543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.99 E-value=57 Score=38.80 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=23.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcc
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGI 508 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 508 (968)
...+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL 304 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLL 304 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCC
Confidence 3455667888888888876 334556667776666655433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.92 E-value=1 Score=30.19 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.2
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHH
Q 040643 801 TYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+|..|+++|...|+|++|.++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467899999999999999998665
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=84.67 E-value=9.1 Score=43.67 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhcCCC--CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCC-C--ChHHHHHHHHHHcccCcHHHHHH
Q 040643 645 GSIDDAKREFLEMPE--KNEVSWNAMI-TGFSQHGYALEAINLFEKMKKHDVM-P--NHVTFVGVLSACSHVGLVNEGLR 718 (968)
Q Consensus 645 g~~~~A~~~f~~~~~--~d~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~-P--d~~t~~~ll~a~~~~g~~~~a~~ 718 (968)
..++.|.++++.+.+ |+...|.-.- ..+...|+.++|++.|++....... | ....+--+...+.-.+++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344555555555442 4444443322 2234445555555555544321000 0 11222233333444455555555
Q ss_pred HHHHhhh
Q 040643 719 YFESMST 725 (968)
Q Consensus 719 ~~~~m~~ 725 (968)
+|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.78 E-value=51 Score=33.10 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=87.3
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHH---HHHHHHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVT---FVGVLSA 706 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t---~~~ll~a 706 (968)
..++--..+|..||..+.|-..+++.- -...+-++++|+++|++...-=..-| ... +..+...
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 345566678999999888776665532 12234567777777777654200111 111 2223334
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCCcch-------HHHHHHHHhhcCChHHHHHHHHhC---C--CCC-CHHHHHHHHH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPKPEH-------YACVVDLLGRAGCLSRAREFTEQM---P--IEP-DAMVWRTLLS 773 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~-------y~~lv~~l~r~G~~~eA~~~~~~m---~--~~p-~~~~~~~ll~ 773 (968)
+.+...++||-..|.+ ++++....+. |-..|-++.-+.++..|+..++.- | ..| +..+...||.
T Consensus 160 lVrl~kf~Eaa~a~lK---e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLK---EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhhhHHhhHHHHHHHH---hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 5566667776666553 2233222222 344444555677888888888873 3 222 3677777887
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
++ ..||.|....++. +++.-.|-|.|+..
T Consensus 237 ay-d~gD~E~~~kvl~---------sp~~r~MDneya~l 265 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS---------SPTVRNMDNEYAHL 265 (308)
T ss_pred Hh-ccCCHHHHHHHHc---------ChHhhhhhHHHHHH
Confidence 76 4567776666543 34444555555543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=83.38 E-value=5.9 Score=37.00 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=38.8
Q ss_pred HhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 776 RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 776 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
..+++.+.++.+...+--+.|+.+..-..-++++...|+|++|.++.+.+.+++
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345677777777777777777777777777777777777777777766665543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.20 E-value=65 Score=33.90 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMK 689 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~ 689 (968)
.||. ...+.+.+++++|.+.|+-.+
T Consensus 249 LW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 249 LWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 4554 344556788888888887543
|
It is also involved in sporulation []. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=82.99 E-value=1.9 Score=28.10 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+|..+...+...|+.+.|....+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555555566677777777777777777764
|
... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.86 E-value=12 Score=42.03 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=87.1
Q ss_pred cCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhh
Q 040643 363 CSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL 442 (968)
Q Consensus 363 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~ 442 (968)
.|+++.|..++..++.+ .-+.+++-+-+.|..++|+++- .+.+.-.++.-++
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------------------------~D~d~rFelal~l 650 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------------------------TDPDQRFELALKL 650 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------------------------CChhhhhhhhhhc
Confidence 46777777777666632 3455666677777777777651 1222222333344
Q ss_pred CChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhh
Q 040643 443 GNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSY 522 (968)
Q Consensus 443 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 522 (968)
|+++.|.++..+ ..+..-|..|.++..+.|++..|.+.|..... |.+|+-.+...|+-+....+-....
T Consensus 651 grl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 651 GRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred CcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 666666655433 23556799999999999999999999987654 4455555555555544444444444
Q ss_pred hhcCCCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 040643 523 ISGFSDDLSIGNALISLYARCGRIQEAYLVFN 554 (968)
Q Consensus 523 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 554 (968)
+.|.. |.-.-+|...|+++++.+++.
T Consensus 720 ~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 720 KQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44322 333344555555555555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.81 E-value=2.7 Score=27.27 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 696 (968)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 567777888888888888888888887 6665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=81.77 E-value=10 Score=31.78 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=48.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 753 REFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 753 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
+.-+-.|.+.|++.+..+-|.|||.-+|+..|.+..+-+-..-..+...|-.+. .+++-.|++-|+.
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l------------qeikp~l~ELGI~ 96 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL------------QEIKPTLKELGIS 96 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH------------HHHhHHHHHHCCC
Confidence 333344578899999999999999999999999999987755443444554432 3566777777763
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.17 E-value=88 Score=34.07 Aligned_cols=146 Identities=9% Similarity=-0.034 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHcccCcHHHHHHHHHHhhhh-cCCCCCcch
Q 040643 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP---NHVTFVGVLSACSHVGLVNEGLRYFESMSTE-YGLVPKPEH 735 (968)
Q Consensus 660 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~i~p~~~~ 735 (968)
....+|..++..+.++|+++.|...+.++...+..+ ++..+..-....-..|+-++|...++...+. ..-......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888888888888888888888877643222 2223333344555667778888777766541 111101111
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC--C-CCC--CHHHHHHHHHHHHhc------CChhHHHHHHHHHHccCCCCcchHHH
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM--P-IEP--DAMVWRTLLSACRVH------KNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m--~-~~p--~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
...+...+.. ..+....- . ..+ -+.++..+...+... ++.+.+...++.+.++.|.....|..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111100000 00000000 0 000 022232233333333 77888999999999999998888888
Q ss_pred HHHHHhh
Q 040643 805 LSNIYAA 811 (968)
Q Consensus 805 l~~~y~~ 811 (968)
++..+..
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 8876654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=81.03 E-value=90 Score=34.07 Aligned_cols=174 Identities=15% Similarity=0.134 Sum_probs=80.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhcC-C-cCCcchH-HHHHHHHhh---hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 567 LISGFAQSGYCEGALQVFSQMTQVG-V-QANLYTF-GSVVSAAAN---LANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 567 li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~-~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
|+-+|-...+++..+++++.|...- . .++.... -...-|..+ .|+.++|++++..+....-.+++.++..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3335666677777777777766531 0 1111110 011123333 56666666666664443334444433333322
Q ss_pred HHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHcccCc-HHHH
Q 040643 641 YAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV---TFVGVLSACSHVGL-VNEG 716 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~---t~~~ll~a~~~~g~-~~~a 716 (968)
|- +.|.+....|.. ..++|+..|.+.-+ +.||.. -+..|+.+..+.-. -.+.
T Consensus 227 yK---------D~~~~s~~~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el 282 (374)
T PF13281_consen 227 YK---------DLFLESNFTDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEEL 282 (374)
T ss_pred HH---------HHHHHcCccchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHH
Confidence 21 111111111211 15566666666655 556543 24444444443221 1222
Q ss_pred HHHH---HHhhhhcCCCCCcc---hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 040643 717 LRYF---ESMSTEYGLVPKPE---HYACVVDLLGRAGCLSRAREFTEQM-PIEPD 764 (968)
Q Consensus 717 ~~~~---~~m~~~~~i~p~~~---~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~ 764 (968)
.++- ..+..+.|...... -++.+..+..-+|+.++|.+..++| ...|.
T Consensus 283 ~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 283 RKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2222 22212223333323 3456667777789999998888887 44443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.75 E-value=10 Score=39.29 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhh----hcCCCCCcch
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMST----EYGLVPKPEH 735 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~i~p~~~~ 735 (968)
..++..++..+...|+.+.+.+.++++.. ..| |...|..++.++...|....|+..++.+.+ +.|+.|..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 34677889999999999999999999998 677 678899999999999999999999988754 4455555443
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.35 E-value=8.3 Score=39.98 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEE
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHA 847 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~ 847 (968)
.+.|-.++...++++.|.++.+.++.+.|+++.-+---+-+|+..|.|..|..=.+..-++- |
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----P------------- 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----P------------- 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----C-------------
Confidence 45666778899999999999999999999999888889999999999999988555443321 1
Q ss_pred EecCCCCCcchHHHHHHHHHHHHH
Q 040643 848 FFVGDRLHPLADKIYDYLGNLNRR 871 (968)
Q Consensus 848 f~~~d~~h~~~~~i~~~l~~l~~~ 871 (968)
.-|.++.|...+++|..+
T Consensus 247 ------~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 247 ------EDPISEMIRAQIHSIEQK 264 (269)
T ss_pred ------CchhHHHHHHHHHHHhhc
Confidence 236677777777766544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 2e-13
Identities = 104/667 (15%), Positives = 192/667 (28%), Gaps = 224/667 (33%)
Query: 331 FRTGEQLHSYAIKVGISKDIIVEGSMLDLYVK---CSDVETAYKFFLTT-ETENVVLWNV 386
F TGE + Y KDI+ D +V C DV+ K L+ E ++++
Sbjct: 9 FETGEHQYQY-------KDILSV--FEDAFVDNFDCKDVQDMPKSILSKEEIDHII---- 55
Query: 387 MLVAYGQLNDLSESFQIF-----KQMQT------EGLTPN-QYTYPTILRTC--TSLGAL 432
+ +S + ++F KQ + E L N ++ I S+
Sbjct: 56 -----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110
Query: 433 SLGEQIHTQLGN---------------LNTAQEILRRL-PEDDVVSWTAMIVGFVQHGMF 476
EQ +L N ++ L L P +V+ + G+
Sbjct: 111 MYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL---------I-DGVL 159
Query: 477 GEALELFEEMENQGIQSDNIGFSS-AISACA--GIQALNQGRQIHAQSYISGFSDDLSIG 533
G G + A+ C +Q +I +++ + S
Sbjct: 160 G------------------SGKTWVALDVCLSYKVQCKMDF-KIF---WLN-LKNCNSPE 196
Query: 534 NALISLYARCGRIQEAY--LVFNKIDAKDNISW--NGLISGFAQSGYCEGALQVFSQMTQ 589
L L +I + + + K I L Y L V
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-CLLV------ 249
Query: 590 VGVQANLYTFGSVVSAAANLANIKQGKQVHAMII--KTGYDSETEASNSLITLYAKCGSI 647
L N++ K +A + K L+T +
Sbjct: 250 -------------------LLNVQNAKAWNAFNLSCKI-----------LLT------TR 273
Query: 648 DDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEK---MKKHDVMPNHVTFVGVL 704
+FL +S + + E +L K + D +P
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKYLDCRPQD-LPR-------- 320
Query: 705 SACS----HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRA--GCLSRAREFTEQ 758
+ + ++ E +R + + +H C D L L+
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNW------KHVNC--DKLTTIIESSLNV------- 365
Query: 759 MPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA-TYVLLSNIYAAAGKWDC 817
+EP R + V P + +LLS I+ K D
Sbjct: 366 --LEPAEY--RKMFDRLSVF-----------------PPSAHIPTILLSLIWFDVIKSDV 404
Query: 818 RDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGY 877
+ ++ K V+K+P +S I SI + ++ ++ + L+R + + Y
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTI----SIPSIYLELKVKL------ENEYALHRSIVD-HY 453
Query: 878 VQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLS-----DSMPILVIKNLR-----V 927
+ DL D Y H I L ++ ++ + + R +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSH-----IGHHLKNIEHPERMTLFRMVFL-DFRFLEQKI 507
Query: 928 CNDCHNW 934
+D W
Sbjct: 508 RHDSTAW 514
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 5e-11
Identities = 80/602 (13%), Positives = 176/602 (29%), Gaps = 139/602 (23%)
Query: 21 LSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFSW- 79
Y +L + FD + V D +I L+ ++D + D +S W
Sbjct: 16 YQYKDILS---VFEDAFVDNFDCKDVQ-DMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 80 -----NKLISGFVAKKLSGRVLGLFLQMIDDDVIP--NEATFVGVLRACIGSG------N 126
+++ FV + L L + + P ++ N
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 127 VA-VQCVNQI---------HGLIISHGFGG---SPLISNPLIDLYAKNGFIDSAKKVFNN 173
V+ +Q ++ ++ G G + + + + KV
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS-----------YKVQCK 179
Query: 174 LCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTP-YAISSALSACTKIELFEI 232
+ FK + W+ + + + L P + S S+ K+ + I
Sbjct: 180 MDFK--IFWLNL-------KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 233 GEQFHGLIFKWGF-----------SSET-----FVCNALVTLYSRSGNLTSAEQIFSKMQ 276
+ L+ + +++ C L+T +R +T F
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRFKQVTD----FLSAA 284
Query: 277 QRDGVTYNSLISGLAQCGYSDKALELFEK---MQLDCLKPDCVTVASLVSACASVGAF-R 332
++ + L D+ L K + L + +T + + R
Sbjct: 285 TTTHISLDHHSMTLTP----DEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSIIAESIR 338
Query: 333 TGEQLHSYAIKVGISK-DIIVEGSMLDLYVKCSDVETAYK-FFLTTETENV------VLW 384
G V K I+E S+ L + ++ + + + ++ ++W
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 385 NVMLVAYGQLNDLSESFQIFKQMQTEGL-----TPNQYTYPTI-LRTCTSLGALSLGEQI 438
+ S+ + ++ L + + P+I L L +
Sbjct: 397 FDV--------IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY---AL 445
Query: 439 HTQLGNLNTAQEILRRLPEDDVVS------WTAMIVGFVQHGMFGEALELFEEMEN---- 488
H + ++ I + DD++ + + I G H E E
Sbjct: 446 HRSI--VD-HYNIPKTFDSDDLIPPYLDQYFYSHI-GH--HLKNIEHPERMTLFRMVFLD 499
Query: 489 -----QGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLS-IGNALISLYAR 542
Q I+ D+ ++++ S +Q L + YI + NA++ +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-----YICDNDPKYERLVNAILDFLPK 554
Query: 543 CG 544
Sbjct: 555 IE 556
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 3e-10
Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 60/232 (25%)
Query: 778 HKNMEIGE--YAANHLLELEPEDSATYVLLSNIYAAAGKWDCR---DQIRQIMKDRGVK- 831
H + E GE Y +L V +DC+ D + I+ +
Sbjct: 6 HMDFETGEHQYQYKDILS---------VFEDAFVD---NFDCKDVQDMPKSILSKEEIDH 53
Query: 832 --KEPGQS-------WI--EVKNSIHAFFVGDRLHP----LADKIYDYLGNLNRRVAEIG 876
W + + FV + L L I +
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE--QRQPSMMTRM 111
Query: 877 YVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDS-------MP-----ILVIKN 924
Y++ R L++D + K V L + LL L + + + +
Sbjct: 112 YIEQRDRLYNDNQVFAKYN-VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD- 169
Query: 925 LRVCND----CHN-----WIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDY 967
VC C W+ + S T++ + + S D+
Sbjct: 170 --VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 8e-08
Identities = 78/549 (14%), Positives = 141/549 (25%), Gaps = 184/549 (33%)
Query: 25 SLLEAKK-----IHGKILKLGFDGEQVL-----------CDKFFNIY-LTSGDLDSA--- 64
+LLE + I G LG G+ + C F I+ L + +S
Sbjct: 143 ALLELRPAKNVLIDGV---LGS-GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 65 MKIFDDMSKRTVFSWNKLISGFVAKKLS-----GRVLGLFLQ-------MIDDDVIPNEA 112
+++ + + +W KL + L ++ +V +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK- 257
Query: 113 TFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFN 172
A + C +I L+ + +++ L + +D
Sbjct: 258 ----AWNA------FNLSC--KI--LLTTRFKQ----VTDFLSAATTTHISLDHHSMTLT 299
Query: 173 NLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEI 232
+ S + RE + P +S I
Sbjct: 300 P---DEVKSLLLKYLDCRPQDLPREV----LTTN-------PRRLSI------------I 333
Query: 233 GEQFHGLIFKWGFSSETFVCNALVTLYSRS-GNLTSAEQ--------IFSK--------- 274
E + W + C+ L T+ S L AE +F
Sbjct: 334 AESIRDGLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392
Query: 275 ------MQQRD-GVTYNSLIS-GLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACA 326
+ + D V N L L + + + + + L+ LK
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLE-LKVKLENEY------- 443
Query: 327 SVGAFRTGEQLH-----SYAIKVGISKDIIVEGSMLDLYV---------KCSDVETAYKF 372
LH Y I D ++ LD Y E F
Sbjct: 444 ---------ALHRSIVDHYNIPKTFDSDDLIP-PYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 373 --------FLTTETENV-VLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTIL 423
FL + + WN A G + + + + +K + N Y ++
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWN----ASGSILNTLQQLKFYKPY----ICDNDPKYERLV 545
Query: 424 RTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELF 483
L L +E L D++ + + E +F
Sbjct: 546 NAI---------------LDFLPKIEENLICSKYTDLL----------RIALMAEDEAIF 580
Query: 484 EEMENQGIQ 492
EE Q +Q
Sbjct: 581 EEAHKQ-VQ 588
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 1e-10
Identities = 20/157 (12%), Positives = 48/157 (30%), Gaps = 8/157 (5%)
Query: 212 PTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQI 271
P ++ L ++ + G + S + A + L A +
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 272 FSKMQQR-------DGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSA 324
+ YN+++ G A+ G + + + ++ L PD ++ A+ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 325 CASVG-AFRTGEQLHSYAIKVGISKDIIVEGSMLDLY 360
T E+ + G+ + +L
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.1 bits (154), Expect = 2e-10
Identities = 20/193 (10%), Positives = 56/193 (29%), Gaps = 7/193 (3%)
Query: 580 ALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639
A + Q ++ A ++ + + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 640 LYAKCGSIDDAKR---EFLEMPEKNEV----SWNAMITGFSQHGYALEAINLFEKMKKHD 692
+ A +K ++ +NA++ G+++ G E + + +K
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 693 VMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA 752
+ P+ +++ L + ++ GL + A ++ RA L
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 753 REFTEQMPIEPDA 765
+ + P
Sbjct: 256 HKVKPTFSLPPQL 268
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.2 bits (144), Expect = 3e-09
Identities = 15/142 (10%), Positives = 43/142 (30%), Gaps = 7/142 (4%)
Query: 296 SDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGS 355
A L + + P +A L+ + + + +S +
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 356 MLDLYVKCSDVETAYKFFLT-------TETENVVLWNVMLVAYGQLNDLSESFQIFKQMQ 408
+ + A+ + + + ++N +++ + + E + ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 409 TEGLTPNQYTYPTILRTCTSLG 430
GLTP+ +Y L+
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQD 214
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.3 bits (126), Expect = 3e-07
Identities = 23/219 (10%), Positives = 63/219 (28%), Gaps = 8/219 (3%)
Query: 567 LISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQV---HAMII 623
L+ + Q +Q + + + + H
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 624 KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK----NEVSWNAMITGFSQHGYAL 679
+ + N+++ +A+ G+ + + + + +S+ A + +
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 680 EAIN-LFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYAC 738
I E+M + + + +LS ++ + + S L P
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 739 VVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRV 777
+ D+ + G +S + ++ + A RV
Sbjct: 278 LRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRV 316
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 3e-06
Identities = 15/101 (14%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 406 QMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTA 465
Q L+ Q + C L L + L ++ + + A
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL------LVVHHGQRQKRKLLTLDMYNA 170
Query: 466 MIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACA 506
+++G+ + G F E + + +++ G+ D + +++A+
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 45.6 bits (106), Expect = 8e-05
Identities = 36/266 (13%), Positives = 77/266 (28%), Gaps = 14/266 (5%)
Query: 405 KQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWT 464
K+ Q + + ++ AL+ Q+ +L + A + + W
Sbjct: 34 KRTQQMRMQRLKAKLQMPFQS-GEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWE 92
Query: 465 AMIVGFVQHG----MFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQI--- 517
+ +Q + + + C L +
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 518 HAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAK----DNISWNGLISGFAQ 573
H L + NA++ +AR G +E V + D +S+ + +
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 574 SGYCEGALQ-VFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETE 632
G ++ QM+Q G++ ++S +K +V
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272
Query: 633 ASNSLIT-LYAKCGSIDDAKREFLEM 657
++ L+ +YAK G + K
Sbjct: 273 NTSKLLRDVYAKDGRVSYPKLHLPLK 298
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.7 bits (101), Expect = 4e-04
Identities = 21/175 (12%), Positives = 50/175 (28%), Gaps = 5/175 (2%)
Query: 204 QMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSG 263
Q + G A ++ L H + + NA++ ++R G
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 264 NLTSAEQIFSKMQQR----DGVTYNSLISGLAQCGYSDKALE-LFEKMQLDCLKPDCVTV 318
+ ++ D ++Y + + + + +E E+M + LK +
Sbjct: 180 AFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
Query: 319 ASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFF 373
A L+S + ++ + +L + K
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 43.3 bits (100), Expect = 4e-04
Identities = 28/213 (13%), Positives = 64/213 (30%), Gaps = 12/213 (5%)
Query: 30 KKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFSWNKLISGFV-- 87
+++ K+ GE + + A + D + W + ++ +
Sbjct: 42 QRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQE 101
Query: 88 -AKKLSGRVLGLFL-QMIDDDVIPNEATFVGVLRACIGSGNV--AVQCVNQIHGLIISHG 143
KLS V Q + + + + C+ + + A + HG
Sbjct: 102 APGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR-QKR 160
Query: 144 FGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFK----DSVSWVAMISGFSQNGYEREAI 199
+ + N ++ +A+ G V + D +S+ A + + + I
Sbjct: 161 KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTI 220
Query: 200 L-LFCQMHILGTVPTPYAISSALSACTKIELFE 231
QM G + LS + + +
Sbjct: 221 ERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 968 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.81 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.75 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.75 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.74 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.72 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.67 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.67 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.63 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.62 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.62 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.59 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.59 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.59 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.58 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.56 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.5 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.46 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.45 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.44 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.43 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.39 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.38 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.37 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.36 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.34 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.33 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.32 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.31 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.3 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.29 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.28 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.27 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.27 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.26 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.24 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.23 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.23 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.23 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.22 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.21 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.21 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.18 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.16 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.15 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.15 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.13 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.11 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.11 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.07 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.07 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.07 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.06 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.06 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.04 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.03 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.0 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.99 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.96 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.95 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.9 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.86 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.85 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.85 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.84 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.8 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.8 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.79 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.76 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.75 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.73 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.71 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.69 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.69 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.67 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.63 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.6 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.58 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.54 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.51 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.5 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.5 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.47 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.45 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.45 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.42 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.42 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.41 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.39 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.39 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.37 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.37 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.36 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.33 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.32 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.32 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.29 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.27 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.24 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.23 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.22 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.22 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.21 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.2 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.19 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.18 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.16 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.15 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.15 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.14 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.14 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.12 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.12 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.1 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.1 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.08 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.02 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.01 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.01 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.99 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.99 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.98 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.98 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.97 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.97 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.97 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.96 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.94 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.93 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.93 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.91 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.9 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.9 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.87 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.85 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.85 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.84 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.83 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.83 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.77 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.75 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.73 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.73 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.71 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.71 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.68 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.68 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.66 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.66 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.63 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.61 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.61 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.6 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.6 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.59 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.57 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.56 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.54 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.54 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.5 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.49 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.45 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.43 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.4 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.3 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.3 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.27 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.27 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.13 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.13 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.0 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.99 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.98 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.84 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.61 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.59 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.52 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.27 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.2 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.18 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.12 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.1 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.05 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.03 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.68 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.42 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.67 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.5 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.33 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.27 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.97 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.54 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 92.23 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.19 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 92.1 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 88.05 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.77 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 83.15 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.69 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.43 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 80.87 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-40 Score=391.09 Aligned_cols=499 Identities=11% Similarity=-0.004 Sum_probs=368.0
Q ss_pred HhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHH
Q 040643 258 LYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQL 337 (968)
Q Consensus 258 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 337 (968)
.+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|...|++++|.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356678888899999999999999999999999999999999999999984 568889999999999999999999999
Q ss_pred HHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 040643 338 HSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQY 417 (968)
Q Consensus 338 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 417 (968)
+..+... +++..+++.++.+|.++|++++|.++|+++...+... .++.+.+.. .
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~---------------~---- 193 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLMQ---------------D---- 193 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC---------------C----
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----ccccccccc---------------c----
Confidence 9987644 6788999999999999999999999999644332100 000000000 0
Q ss_pred chhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 040643 418 TYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIG 497 (968)
Q Consensus 418 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 497 (968)
...+.+..+|+.++.+|.+.|++++|+++|++|.+. .|+..+
T Consensus 194 ------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 235 (597)
T 2xpi_A 194 ------------------------------------GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYE 235 (597)
T ss_dssp ------------------------------------SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred ------------------------------------cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhH
Confidence 000113345566666666666666666666666553 233222
Q ss_pred -HHHHHHHhhcccch--hhhhhh-hHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC--CCcccHHHHHHHH
Q 040643 498 -FSSAISACAGIQAL--NQGRQI-HAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA--KDNISWNGLISGF 571 (968)
Q Consensus 498 -~~~ll~a~~~~~~~--~~a~~i-~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~ 571 (968)
+..+...+...+.. +....+ +..+...+......+++.++.+|.++|++++|.++|+++.. ++..+|+.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 22222222211111 111122 34444445555566677778888888999999999988877 6888899999999
Q ss_pred HhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHH
Q 040643 572 AQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAK 651 (968)
Q Consensus 572 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 651 (968)
.+.|++++|+++|++|.+.+ ..+..++..++.++.+.|+.++|..++..+.+.. +.+..+++.++.+|.++|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999988764 2366788888888899999999999998888653 557888888999999999999999
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 652 REFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 652 ~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+ ..| +..++..++.+|.+.|++++|.++|++|.+..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998875 34678999999999999999999999999988 445 57788899999999999999999999887542
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 728 GLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-------PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 728 ~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
+.+...|.+++++|.+.|++++|.++++++ +..|+ ..+|..+..+|..+|+++.|+..++++++++|++
T Consensus 472 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 472 --QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred --CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 234778999999999999999999998887 55787 7889999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 799 SATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 799 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
+..|..|+++|...|+|++|.+..+.+.+.
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999887776553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=368.96 Aligned_cols=461 Identities=9% Similarity=0.026 Sum_probs=366.7
Q ss_pred HcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHH
Q 040643 291 AQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAY 370 (968)
Q Consensus 291 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 370 (968)
...|....+...+..+. .++...|+.++..+.+.|++++|..++..+.+. .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34555555666655543 357788999999999999999999999999865 467788899999999999999999
Q ss_pred HHHhhC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHH
Q 040643 371 KFFLTT--ETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTA 448 (968)
Q Consensus 371 ~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a 448 (968)
.+|+.+ ..++..+|+.++.+|.+.|++++|+++|+++ .|+... .
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~----~------------------------- 183 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET-----NPFRKD----E------------------------- 183 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS-----CTTC--------------------------------
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhcc-----CCcccc----c-------------------------
Confidence 999998 4678899999999999999999999998852 121100 0
Q ss_pred HHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCC
Q 040643 449 QEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSD 528 (968)
Q Consensus 449 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 528 (968)
.++.+.+ -...|..++..++..+..++.+.|++++|.+.+..+.+.+..
T Consensus 184 -------------------~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 232 (597)
T 2xpi_A 184 -------------------KNANKLL-----------MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK- 232 (597)
T ss_dssp -------------------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -------------------ccccccc-----------ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-
Confidence 0000111 122356678899999999999999999999999999987643
Q ss_pred CchhhhhHHHHHHHcCCHHHHHH--H-HHhCCCC----CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHH
Q 040643 529 DLSIGNALISLYARCGRIQEAYL--V-FNKIDAK----DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGS 601 (968)
Q Consensus 529 ~~~~~~~Li~~y~k~g~~~~A~~--~-f~~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 601 (968)
+...+..+...+...+..+.+.. + |..+... ...+|+.++..|.+.|++++|.++|++|.+. .++..++..
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 44555556555543333222211 1 3333322 3346777789999999999999999999876 588999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH
Q 040643 602 VVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA 678 (968)
Q Consensus 602 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~ 678 (968)
+..++.+.|++++|..++..+.+.+ +.+..+++.++..|.+.|++++|.++|+++. ..+..+|+.++..|.+.|+.
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 9999999999999999999999876 4478889999999999999999999999876 45789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 040643 679 LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTE 757 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~ 757 (968)
++|+++|+++.+ +.|+ ..++..++.++.+.|++++|.++|+.|.+. .+++...|..++.+|.+.|++++|.++++
T Consensus 390 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 390 SEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998 5675 669999999999999999999999999653 23468889999999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc------CCCC-cchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 758 QM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL------EPED-SATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 758 ~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
++ ...| +..+|..+...+...|+++.|...+++++++ +|++ ...|..++++|...|++++|.++.+.+.+.
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 98 3334 5899999999999999999999999999998 5654 678999999999999999999988877665
Q ss_pred C
Q 040643 829 G 829 (968)
Q Consensus 829 g 829 (968)
+
T Consensus 546 ~ 546 (597)
T 2xpi_A 546 S 546 (597)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=261.34 Aligned_cols=184 Identities=12% Similarity=0.158 Sum_probs=174.0
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhh---------hHHHHHHHHHHHHHhCCCCChh
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLA---------NIKQGKQVHAMIIKTGYDSETE 632 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~g~~~~~~ 632 (968)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578899999999999999999999999999999999999999998654 5889999999999999999999
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHc
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP----EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACS 708 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~ 708 (968)
+||+||++|+++|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+.|+.||.+||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 68999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhc
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRA 746 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~ 746 (968)
+.|++++|.++|++|++ .|+.|+..+|+.+++.+.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999965 49999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=255.32 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=171.4
Q ss_pred ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCc---------hHHHHHHHHHHHHhcCCCchh
Q 040643 180 VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIEL---------FEIGEQFHGLIFKWGFSSETF 250 (968)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 250 (968)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999986543 678999999999999999999
Q ss_pred HHHHHHHHhhccCChhHHHHHHhhCC----CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHh
Q 040643 251 VCNALVTLYSRSGNLTSAEQIFSKMQ----QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACA 326 (968)
Q Consensus 251 ~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 326 (968)
+||+||.+|++.|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 47999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhc
Q 040643 327 SVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKC 363 (968)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 363 (968)
+.|++++|.++++.|.+.|..|+..+++.|+..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988754
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-22 Score=225.68 Aligned_cols=373 Identities=11% Similarity=0.065 Sum_probs=260.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHH
Q 040643 388 LVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMI 467 (968)
Q Consensus 388 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 467 (968)
...+.+.|++++|++.+.++.+. .|+... .+..+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~-------------------------------------------~~~~l~ 40 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTG-------------------------------------------VLLLLS 40 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHH-------------------------------------------HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-------------------------------------------HHHHHH
Confidence 34566778888888888776654 243322 333344
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHH
Q 040643 468 VGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQ 547 (968)
Q Consensus 468 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 547 (968)
..+.+.|++++|...++...+. .+.+..++..+..++...|+++.|.+.+..+++..+ .+...+..+...|.+.|+++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 118 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDME 118 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHH
Confidence 4444555555555555544442 122334444444455555555555555554444321 13344556666666666666
Q ss_pred HHHHHHHhCCC--C-CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC-cchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040643 548 EAYLVFNKIDA--K-DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN-LYTFGSVVSAAANLANIKQGKQVHAMII 623 (968)
Q Consensus 548 ~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 623 (968)
+|.+.|+++.. | +...|..+...|...|++++|++.|+++... .|+ ..++..+...+...|++++|...+..++
T Consensus 119 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665432 2 3345566666666677777777777776654 343 3456666666677777777777777776
Q ss_pred HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHH
Q 040643 624 KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVT 699 (968)
Q Consensus 624 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t 699 (968)
+.. +.+...+..+...|...|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+ ..|+ ..+
T Consensus 197 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 273 (388)
T 1w3b_A 197 TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDA 273 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHH
Confidence 653 3356677788888888999999998888765 33678889999999999999999999999988 5675 557
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRV 777 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~ 777 (968)
+..+..++...|++++|.++|+.+.+. .+++...|..++.++.+.|++++|.+.++++ ...|+ ..+|..+...+..
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 888888999999999999999988654 2344778888999999999999999999887 55565 7788888888999
Q ss_pred cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 778 HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
.|+.+.|....+++++++|+++..|..++++|...|+
T Consensus 352 ~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999998887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-22 Score=220.85 Aligned_cols=350 Identities=17% Similarity=0.132 Sum_probs=303.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCC
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNI-GFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGR 545 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 545 (968)
...+.+.|++++|++.++++.+. .|+.. .+..+...+...++++.+...+..+++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45667899999999999998875 46554 44555566788899999999998888765 3467889999999999999
Q ss_pred HHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhhhHHHHHHHHHH
Q 040643 546 IQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLANIKQGKQVHAM 621 (968)
Q Consensus 546 ~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~ 621 (968)
+++|...|+++. ..+..+|..+...|.+.|++++|++.|+++.+. .|+... +..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999875 335567999999999999999999999999875 576654 44556677888999999999999
Q ss_pred HHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-h
Q 040643 622 IIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-H 697 (968)
Q Consensus 622 ~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~ 697 (968)
+++.. +.+...++.+...|.+.|++++|.+.|+++. ..+...|..+...+...|++++|+..|++..+ +.|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 98864 4467889999999999999999999999876 34677899999999999999999999999998 6786 5
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIE-PDAMVWRTLLSA 774 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~-p~~~~~~~ll~~ 774 (968)
.++..+..++...|++++|.+.|+.+.+. .|+ ...|..++.++.+.|++++|.+.++++ ... ++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 68899999999999999999999998653 565 678999999999999999999999988 333 458899999999
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+...|+++.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998877754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=232.32 Aligned_cols=346 Identities=13% Similarity=0.101 Sum_probs=253.4
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHH
Q 040643 458 DDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALI 537 (968)
Q Consensus 458 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 537 (968)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|.+.+..+++.+.. +..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 356688999999999999999999999998752 223444444445555555555555555555444322 233444444
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCC---c---ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhh
Q 040643 538 SLYARCGRIQEAYLVFNKIDAKD---N---ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLAN 611 (968)
Q Consensus 538 ~~y~k~g~~~~A~~~f~~m~~~d---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 611 (968)
.+|.+.|++++|...|+++...+ . ..|..++..+...+ +..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 44444444444444444433221 1 23333322211110 1112233566777
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040643 612 IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKM 688 (968)
Q Consensus 612 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 688 (968)
+++|...+..+.+.. +.+..++..++.+|.++|++++|.+.|+++. ..+..+|+.++..|...|++++|++.|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887777653 4567888999999999999999999999876 457899999999999999999999999999
Q ss_pred HHCCCCCChHH-HHHH------------HHHHcccCcHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHHhhcCChH
Q 040643 689 KKHDVMPNHVT-FVGV------------LSACSHVGLVNEGLRYFESMSTEYGLVPK-----PEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 689 ~~~g~~Pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l~r~G~~~ 750 (968)
.+ ..|+..+ +..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|.++++++.+.|+++
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 98 6787654 3333 78899999999999999999764 455 458999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH------------HHHhhcC--C
Q 040643 751 RAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS------------NIYAAAG--K 814 (968)
Q Consensus 751 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~------------~~y~~~g--~ 814 (968)
+|.+.++++ ...| +..+|..+..+|...|+++.|...++++++++|+++..+..|+ +.|...| +
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 999999997 5566 4899999999999999999999999999999999999999999 6788888 5
Q ss_pred cchHHHHHHHHHhCCCccCC
Q 040643 815 WDCRDQIRQIMKDRGVKKEP 834 (968)
Q Consensus 815 ~~~a~~~~~~m~~~g~~k~~ 834 (968)
|.+..++++.+++..++..|
T Consensus 393 ~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCG
T ss_pred cCCHHHHHHHHHHHHHHhCC
Confidence 55556677777665555555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-17 Score=192.91 Aligned_cols=726 Identities=12% Similarity=0.128 Sum_probs=455.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCC--CCccchHHHHHHHHhcCChh
Q 040643 16 LLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSK--RTVFSWNKLISGFVAKKLSG 93 (968)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~ 93 (968)
++.+++..|.++..... ..+.|..|| |..|++.+.+. +++.|..+-..+.. +.....+.++..+...+..+
T Consensus 488 vi~~l~~~gq~~ki~~Y---~~~~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~~~iq 560 (1630)
T 1xi4_A 488 VIQCFAETGQVQKIVLY---AKKVGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQ 560 (1630)
T ss_pred HHHHHHHhCCHHHHHHH---HhccCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCCCCccCHHHHHHHHHhcCcHH
Confidence 34444445554443333 223455555 34455554432 35555444443322 23456677777777778888
Q ss_pred hHHHHHHHhHhCCCCCCcccH-HHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHh
Q 040643 94 RVLGLFLQMIDDDVIPNEATF-VGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFN 172 (968)
Q Consensus 94 ~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 172 (968)
++..++.+..+.+ .|..... +.+|..- +. .+.++-+.+...+.- +-+-+..+...+-+.|-+..|.+.++
T Consensus 561 ~~t~fLld~lk~n-~~e~~~LQTrlle~N-----l~--~~pqvadail~~~~f-thyd~~~IA~LCE~aGl~qrale~y~ 631 (1630)
T 1xi4_A 561 QCTAFLLDALKNN-RPSEGPLQTRLLEMN-----LM--HAPQVADAILGNQMF-THYDRAHIAQLCEKAGLLQRALEHFT 631 (1630)
T ss_pred HHHHHHHHHHhCC-ChhhhhHhHHHHHHh-----hc--cchhHHHHHHhcCcc-ccccHHHHHHHHHHcCcHHHHHHhcC
Confidence 8777776666543 3322222 2222211 11 345666666666544 55667888888999999999999988
Q ss_pred hCC-------CCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhH-------------HHHHHhhcccCchHH
Q 040643 173 NLC-------FKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAI-------------SSALSACTKIELFEI 232 (968)
Q Consensus 173 ~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------------~~ll~~~~~~~~~~~ 232 (968)
.+. ..+...=.-++ .|...=..+.+++.+++|...+++-|.... ..++..+-+.+.++.
T Consensus 632 d~~dikR~~~~~~~~~~~~l~-~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~eg 710 (1630)
T 1xi4_A 632 DLYDIKRAVVHTHLLNPEWLV-NYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEG 710 (1630)
T ss_pred CHHHHHHHhhccCcCCHHHHH-HHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhh
Confidence 651 11111112233 344446779999999999876554432222 222222222222222
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCC---------------CCCc---------cc------
Q 040643 233 GEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ---------------QRDG---------VT------ 282 (968)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---------------~~~~---------~~------ 282 (968)
.--+++.++ .+..|+.+....|.+.++.|++.+.+++..+-. -+|. .-
T Consensus 711 l~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~ 788 (1630)
T 1xi4_A 711 LFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLV 788 (1630)
T ss_pred HHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHH
Confidence 222222222 256789999999999999999999888876532 1111 10
Q ss_pred -------HHHHHHHHHcCCChhHHHHHHHHhhccccC-----------CCcccHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040643 283 -------YNSLISGLAQCGYSDKALELFEKMQLDCLK-----------PDCVTVASLVSACASVGAFRTGEQLHSYAIKV 344 (968)
Q Consensus 283 -------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 344 (968)
....|..|.+.-++..+-.+...+...+.. .+.....-|+..+-+.+++......++.-+..
T Consensus 789 ~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~ 868 (1630)
T 1xi4_A 789 LYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHE 868 (1630)
T ss_pred HHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 122344444443333333333222221111 11122333444444445555555556666666
Q ss_pred CCCCChhhHhHHHHHHHhcCCh-hH------------------------HHHHHhhC-----------------------
Q 040643 345 GISKDIIVEGSMLDLYVKCSDV-ET------------------------AYKFFLTT----------------------- 376 (968)
Q Consensus 345 g~~~~~~~~~~Li~~y~~~g~~-~~------------------------A~~~f~~~----------------------- 376 (968)
| ..++.++|+|...|...++- +. |.-.+++-
T Consensus 869 g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~aryl 947 (1630)
T 1xi4_A 869 G-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYL 947 (1630)
T ss_pred C-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHH
Confidence 6 66788889988888755321 11 11111100
Q ss_pred -CCCCcchH--------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCccchhh
Q 040643 377 -ETENVVLW--------------------------------NVMLVAYGQLNDLSESFQIFKQMQTEGL--TPNQYTYPT 421 (968)
Q Consensus 377 -~~~~~~~~--------------------------------~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ 421 (968)
.+.|...| ...+.+|...|.+.+|++++++....+- .-+...-+.
T Consensus 948 v~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 948 VRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred HHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 00122222 2344567777778888888877773311 000111111
Q ss_pred hhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 040643 422 ILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSA 501 (968)
Q Consensus 422 ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 501 (968)
++.+..+. +...+.+....+ +......+...+...|.+++|..+|++... .......+
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kL----------------d~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL 1085 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRL----------------DNYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL 1085 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHh----------------hhccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH
Confidence 22222221 222222222111 111234577888899999999999999521 11112222
Q ss_pred HHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHH
Q 040643 502 ISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGAL 581 (968)
Q Consensus 502 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 581 (968)
+. ..+++++|.++...+ .++.+|..+..++.+.|++++|...|.+. .|...|..++..+.+.|++++|+
T Consensus 1086 ie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1086 IE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHH
Confidence 22 667888888887754 35788999999999999999999999764 67788899999999999999999
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCC
Q 040643 582 QVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKN 661 (968)
Q Consensus 582 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d 661 (968)
+.+...++.. ++....+.+..++++.++++....+. + .++...+..+.+.|...|++++|...|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 9998877654 44444445888999998888644442 2 345566677999999999999999999996
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
..|..+...|.+.|++++|++.+++. -|..+|.-+..+|...|.+..|..+.. ++.-.++.+..++.
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl------~Iiv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL------HIVVHADELEELIN 1288 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH------hhhcCHHHHHHHHH
Confidence 48999999999999999999999976 356889999999999999999988765 34556778889999
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCChhHHHHHHHHHHccCC-----CCcchHHHHHHHHhhc
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRV--HKNMEIGEYAANHLLELEP-----EDSATYVLLSNIYAAA 812 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~l~p-----~~~~~~~~l~~~y~~~ 812 (968)
.|.+.|.++||..+++.. .++|. ...|.-|...+.+ -+++..+.+.+..-+.+.| ++...|.-+.-+|.+.
T Consensus 1289 yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999876 66665 5666555555444 3466777777777777777 7888999999999999
Q ss_pred CCcchHHH
Q 040643 813 GKWDCRDQ 820 (968)
Q Consensus 813 g~~~~a~~ 820 (968)
|+|+.|..
T Consensus 1369 ~e~dnA~~ 1376 (1630)
T 1xi4_A 1369 EEYDNAII 1376 (1630)
T ss_pred ccHHHHHH
Confidence 99999985
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-20 Score=216.82 Aligned_cols=457 Identities=10% Similarity=-0.011 Sum_probs=265.8
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHH
Q 040643 282 TYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYV 361 (968)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 361 (968)
.|......+.+.|++++|+..|+++.... ||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34455566667777777777777776653 566667777777777777777777777777664 344566677777777
Q ss_pred hcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHH
Q 040643 362 KCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQI 438 (968)
Q Consensus 362 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 438 (968)
+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777777766432 233334444444444433444444443333333223222221111100000011101011
Q ss_pred HHhhCChHHHHHHHhhCC-CCCceeHHHHHHHHHh---cCChhHHHHHHHHHHh-----cCCCCChhhHHHHHHHhhccc
Q 040643 439 HTQLGNLNTAQEILRRLP-EDDVVSWTAMIVGFVQ---HGMFGEALELFEEMEN-----QGIQSDNIGFSSAISACAGIQ 509 (968)
Q Consensus 439 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ll~a~~~~~ 509 (968)
....+.+..+... .... +.+...|......+.. .|++++|+.+|+++.+ ....|+.....
T Consensus 165 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---------- 233 (514)
T 2gw1_A 165 ASFFGIFKPELTF-ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK---------- 233 (514)
T ss_dssp HHHHTTSCCCCCC-SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH----------
T ss_pred HHHHhhcCHHHHH-HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC----------
Confidence 1001100000000 0000 1123334444444443 7788888888887766 22233221000
Q ss_pred chhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCC--CCCcccHHHHHHHHHhcCChhhHHHHHHHh
Q 040643 510 ALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKID--AKDNISWNGLISGFAQSGYCEGALQVFSQM 587 (968)
Q Consensus 510 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 587 (968)
+.+..++..+...|...|++++|...|+++. .++...|..+...|...|++++|+..|+++
T Consensus 234 -----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 234 -----------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp -----------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1123344556666666666666666666542 122445566666666666666666666665
Q ss_pred hhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHH
Q 040643 588 TQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVS 664 (968)
Q Consensus 588 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~ 664 (968)
.... +.+..++..+...|.+.|++++|...|+++. ..+...
T Consensus 297 ~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 340 (514)
T 2gw1_A 297 LKLD------------------------------------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340 (514)
T ss_dssp HTTC------------------------------------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHH
T ss_pred hhcC------------------------------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHH
Confidence 5431 2234455666777777788888877777653 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHH
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACV 739 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~l 739 (968)
|..+...|...|++++|+..|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+...-.|. ...|..+
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 88888888888888888888888887 4554 557777888888888888888888877654322222 3378888
Q ss_pred HHHHhh---cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 740 VDLLGR---AGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 740 v~~l~r---~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
+.++.+ .|++++|.+.++++ ...|+ ..+|..+...+...|+.+.|...++++++++|+++..+..+..
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 888888 88899988888876 34454 7778888888899999999999999999999988887776643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-20 Score=213.86 Aligned_cols=422 Identities=9% Similarity=-0.005 Sum_probs=296.3
Q ss_pred HhHHHHHHHhcCChhHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCC
Q 040643 353 EGSMLDLYVKCSDVETAYKFFLTTE--TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLG 430 (968)
Q Consensus 353 ~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 430 (968)
+..+...|.+.|++++|...|+++. .|+...|..+..+|.+.|++++|+..|+++.+..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 69 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK------------------- 69 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------------------
Confidence 3344455666667777776666654 2566667777777777777777777777665432
Q ss_pred chhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccc
Q 040643 431 ALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQA 510 (968)
Q Consensus 431 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 510 (968)
+.+...|..+...|.+.|++++|+..|+++...+ +++......++..+.....
T Consensus 70 --------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 122 (514)
T 2gw1_A 70 --------------------------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQA 122 (514)
T ss_dssp --------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHH
Confidence 1234467777788888888888888888887754 2344444444444444333
Q ss_pred hhhhhhhhHhhhhhcCCCCchhhhh---HHHHHHHcCCHHHHHHHHHhCCC---------C-CcccHHHHHHHHHh---c
Q 040643 511 LNQGRQIHAQSYISGFSDDLSIGNA---LISLYARCGRIQEAYLVFNKIDA---------K-DNISWNGLISGFAQ---S 574 (968)
Q Consensus 511 ~~~a~~i~~~~~~~g~~~~~~~~~~---Li~~y~k~g~~~~A~~~f~~m~~---------~-d~~~~~~li~~~~~---~ 574 (968)
.....+.+..+.+.+..++....+. .............+...+..... + +...|......+.. .
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (514)
T 2gw1_A 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202 (514)
T ss_dssp HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT
T ss_pred HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh
Confidence 3333333332222211111110000 00001111111222222222211 1 23344444444554 8
Q ss_pred CChhhHHHHHHHhhh-----cCCcC--------CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHH
Q 040643 575 GYCEGALQVFSQMTQ-----VGVQA--------NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLY 641 (968)
Q Consensus 575 g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 641 (968)
|++++|+.+|+++.. ..-.| +..++..+...+...|++++|...+..+.+.... ...+..+...|
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~ 280 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIM 280 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHH
Confidence 999999999999887 32222 2345667777888999999999999999887533 88889999999
Q ss_pred HhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHH
Q 040643 642 AKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGL 717 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 717 (968)
.+.|++++|.+.|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ..++..+...+...|++++|.
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999865 34678999999999999999999999999998 5665 568889999999999999999
Q ss_pred HHHHHhhhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCChhHHH
Q 040643 718 RYFESMSTEYGLVP-KPEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRV---HKNMEIGE 785 (968)
Q Consensus 718 ~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~ 785 (968)
.+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ |-.|+ ..+|..+...+.. .|+++.|.
T Consensus 359 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 359 TLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 999998764 34 3678899999999999999999999887 33343 4588888888999 99999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 786 YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 786 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998776654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=5.4e-15 Score=177.00 Aligned_cols=381 Identities=15% Similarity=0.137 Sum_probs=294.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhC--CCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcC
Q 040643 318 VASLVSACASVGAFRTGEQLHSYAIKVG--ISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLN 395 (968)
Q Consensus 318 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 395 (968)
.+..++++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+.....++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 4556677777888888888888777332 224456667777777666 4455555555544323 344667778888
Q ss_pred CHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhh-HHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcC
Q 040643 396 DLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLG-EQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHG 474 (968)
Q Consensus 396 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 474 (968)
.+++|..+|++. +....+ ..+...++++++|.+..++.. +..+|..+..++.+.|
T Consensus 1064 lyEEAf~IYkKa----------------------~~~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1064 LFEEAFAIFRKF----------------------DVNTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred CHHHHHHHHHHc----------------------CCHHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 888888888874 223333 334446788888888888764 4568999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 040643 475 MFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFN 554 (968)
Q Consensus 475 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 554 (968)
++++|++.|.+. -|...|..+..+|.+.|+++.+.+.+....+.. +++.+.+.++..|++.+++++.....
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999663 567788889999999999999999999888765 44445567999999999999644443
Q ss_pred hCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHH
Q 040643 555 KIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEAS 634 (968)
Q Consensus 555 ~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 634 (968)
..++...|..+...|...|++++|..+|... ..|..+...+.++|+++.|.+....+ .+..+|
T Consensus 1191 --~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1191 --NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred --hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 4556677888999999999999999999985 37899999999999999999998876 456888
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHcccC
Q 040643 635 NSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV---TFVGVLSACSHVG 711 (968)
Q Consensus 635 ~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~---t~~~ll~a~~~~g 711 (968)
..+...+...|++..|...... ..-+...+..++..|...|.+++|+.+++..+. +.|.+. |..+.+.+-.+-+
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHH
Confidence 8888888899999999998775 333555667899999999999999999998876 566543 4467777777888
Q ss_pred cHHHHHHHHHHhhhhcCCCC------CcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 712 LVNEGLRYFESMSTEYGLVP------KPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p------~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
+..|+.++|.+- -+++| +..+|.-++-+|.+.|+++.|...+-+
T Consensus 1331 klmEhlk~f~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1331 KMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHHh---cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 899999988843 36666 367799999999999999999855443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-18 Score=201.05 Aligned_cols=417 Identities=10% Similarity=0.054 Sum_probs=278.2
Q ss_pred hHhHHHHHHHhcCChhHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhcc
Q 040643 352 VEGSMLDLYVKCSDVETAYKFFLTTE---TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTS 428 (968)
Q Consensus 352 ~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 428 (968)
.+..+...|.+.|++++|...|+++. ..+..+|..+..+|.+.|++++|++.|++..+.. |
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-------------- 90 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--P-------------- 90 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C--------------
Confidence 34445556666666666666666543 2355667777777777777777777777665432 1
Q ss_pred CCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcc
Q 040643 429 LGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGI 508 (968)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 508 (968)
.+...|..+...+...|++++|+..|+.+. ..|+... ..+..+...
T Consensus 91 -----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~~~ 136 (537)
T 3fp2_A 91 -----------------------------DHSKALLRRASANESLGNFTDAMFDLSVLS---LNGDFDG--ASIEPMLER 136 (537)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHH
T ss_pred -----------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHh---cCCCCCh--HHHHHHHHH
Confidence 133345556666666666666666664321 1222111 112222233
Q ss_pred cchhhhhhhhHhhhhhcC--CCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcc---cHHHHHHHHHh--------cC
Q 040643 509 QALNQGRQIHAQSYISGF--SDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNI---SWNGLISGFAQ--------SG 575 (968)
Q Consensus 509 ~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~--------~g 575 (968)
+....+...+..+++... .+........+..|....+.+.+...+......+.. .+..+...+.. .|
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 333445555555544311 111222344555666777777777776666554433 33333332222 24
Q ss_pred ChhhHHHHHHHhhhcCCcCCc--------chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCH
Q 040643 576 YCEGALQVFSQMTQVGVQANL--------YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSI 647 (968)
Q Consensus 576 ~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~ 647 (968)
++++|+.+|+++.+. .|+. .++..+...+...|++++|...+..+++.. |+...+..+...|.+.|++
T Consensus 217 ~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 778888888888764 3442 234455556677788899999988888854 4477788888889999999
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 648 DDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 648 ~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
++|.+.|+++. ..+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998765 34678899999999999999999999999988 5665 567888888999999999999999988
Q ss_pred hhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhc----------CChhHH
Q 040643 724 STEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRVH----------KNMEIG 784 (968)
Q Consensus 724 ~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~----------g~~~~a 784 (968)
.+. .|+ ...+..++.++.+.|++++|.+.++++ |-.++ ...+..+...+... |+++.|
T Consensus 371 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 371 KLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 654 344 667888899999999999999998886 22221 22233444456666 999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 785 EYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 785 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997766654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=202.09 Aligned_cols=447 Identities=8% Similarity=-0.011 Sum_probs=288.1
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHH
Q 040643 281 VTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLY 360 (968)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 360 (968)
..|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+..+|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345666667777777777777777776542 2234556666666666677777777777666664 34556666677777
Q ss_pred HhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHH
Q 040643 361 VKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHT 440 (968)
Q Consensus 361 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 440 (968)
.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++..... +.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~------------------------ 156 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE--GR------------------------ 156 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCc--cc------------------------
Confidence 77777777777775332 2222223334444455555666666666543210 00
Q ss_pred hhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHh
Q 040643 441 QLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQ 520 (968)
Q Consensus 441 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 520 (968)
.+........+..+....+.+.++..+.+... ..|....+...+......
T Consensus 157 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~------------ 206 (537)
T 3fp2_A 157 ----------------GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSA------------ 206 (537)
T ss_dssp ------------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTC------------
T ss_pred ----------------cccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHh------------
Confidence 00001112223333334444443333222211 111111111111000000
Q ss_pred hhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCc----------ccHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 040643 521 SYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDN----------ISWNGLISGFAQSGYCEGALQVFSQMTQV 590 (968)
Q Consensus 521 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 590 (968)
..-......|++++|..+|+++...++ .+|..+...+...|++++|+..|++....
T Consensus 207 --------------~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 207 --------------TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp --------------SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 001111223466677777766654321 24666677788889999999999998875
Q ss_pred CCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHH
Q 040643 591 GVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNA 667 (968)
Q Consensus 591 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~ 667 (968)
.|+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..
T Consensus 273 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 349 (537)
T 3fp2_A 273 --HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349 (537)
T ss_dssp --CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred --CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4666677777888888999999999999888864 4467788999999999999999999999876 346788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHH
Q 040643 668 MITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDL 742 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~ 742 (968)
+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|++++|..+|+.+.+...-.+. ...+.....+
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999998 5675 558888999999999999999999988654321222 1123444577
Q ss_pred Hhhc----------CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 743 LGRA----------GCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 743 l~r~----------G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
+.+. |++++|.+.++++ ...|+ ..+|..+...+...|+.+.|...+++++++.|++......+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 7777 9999999999987 44554 78898999999999999999999999999999887765543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.80 E-value=5.5e-18 Score=193.56 Aligned_cols=290 Identities=14% Similarity=0.087 Sum_probs=209.8
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHh
Q 040643 531 SIGNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAA 607 (968)
Q Consensus 531 ~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 607 (968)
..+..+...|.+.|++++|...|+++. ..+..+|..+...|.+.|++++|+..|+++.+.+ ..+..++..+...+.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 344445555555555555555555432 2234455555555555555555555555554432 112334444444555
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCh---hHHhHH------------hhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYDSET---EASNSL------------ITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMI 669 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li 669 (968)
..|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|.+.|+++. ..+...|..++
T Consensus 106 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 5555555555555554422 1122 233333 445889999999999999876 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHH--------
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACV-------- 739 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~l-------- 739 (968)
..|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|..+|+.+.+. .|+ ...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASK--LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHH--HHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998 4564 678999999999999999999999998643 565 3334444
Q ss_pred ----HHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 740 ----VDLLGRAGCLSRAREFTEQM-PIEPD-----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 740 ----v~~l~r~G~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
+..+.+.|++++|.+.++++ ...|+ ...|..+...+...|+++.|...++++++++|+++..|..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999988 44555 447778888899999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHh
Q 040643 810 AAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 810 ~~~g~~~~a~~~~~~m~~ 827 (968)
...|++++|.+..+...+
T Consensus 340 ~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 999999999998877655
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=179.17 Aligned_cols=326 Identities=17% Similarity=0.173 Sum_probs=167.3
Q ss_pred HHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhh
Q 040643 436 EQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGR 515 (968)
Q Consensus 436 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 515 (968)
..+...+|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.+|...|+++++.
T Consensus 10 ~~ll~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 344556688999999999996664 999999999999999999999975 368889999999999999999999
Q ss_pred hhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC
Q 040643 516 QIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 516 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 595 (968)
..+....+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 988888774 44578899999999999999999988864 67789999999999999999999999987
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH 675 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 675 (968)
..|..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDR 220 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHC
Confidence 47899999999999999999998877 378999999999999999999988877765 3444455799999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC------CcchHHHHHHHHhhc
Q 040643 676 GYALEAINLFEKMKKHDVMPNH---VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP------KPEHYACVVDLLGRA 746 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p------~~~~y~~lv~~l~r~ 746 (968)
|++++|+.++++.+. ..|-. .|..+++.+-.+-|.+.+.++.|. +.-+|+| +..+|.-++-+|..-
T Consensus 221 G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 221 GYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp TCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999886 55643 355566666667788888888876 3447777 488899999999999
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 747 GCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 747 G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
|+++.|...+-+-| |++---..+.....+-.|.|+--++..-.++-.|.
T Consensus 296 ~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 296 EEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp TCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 99999987766553 22222223444556677777777777777766663
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=173.65 Aligned_cols=308 Identities=12% Similarity=0.072 Sum_probs=212.7
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHH
Q 040643 460 VVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISL 539 (968)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 539 (968)
+..|..+...+.+.|++++|+..|+++.+. .|+ +..++..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~~a~~ 46 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD----------------------------------NYIAYYRRATV 46 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc----------------------------------cHHHHHHHHHH
Confidence 345777888899999999999999998774 232 22334445555
Q ss_pred HHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC---Cc-chHHHH----------
Q 040643 540 YARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA---NL-YTFGSV---------- 602 (968)
Q Consensus 540 y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~-~t~~~l---------- 602 (968)
|...|++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +. ..+..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHH
Confidence 566666666666665543 224455666666666667777777776666544 33 21 122111
Q ss_pred --HHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC
Q 040643 603 --VSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGY 677 (968)
Q Consensus 603 --l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~ 677 (968)
...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++. ..+...|..+...|...|+
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345666777777777777777653 3456677778888888888888888888754 3467788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCChHH-HH------------HHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-----chHHHH
Q 040643 678 ALEAINLFEKMKKHDVMPNHVT-FV------------GVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-----EHYACV 739 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~l 739 (968)
+++|+..|++..+ ..|+... +. .+...+...|++++|..+|+.+.+. .|+. ..|..+
T Consensus 204 ~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 204 HELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHH
Confidence 8888888888887 5665432 22 2255677888888888888877654 3432 235567
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 740 VDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..++...|++++|.+.+++. ...| +..+|..+...+...|+++.|....+++++++|++...+..|..++..
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 77888888888888888776 3445 477777777788888888888888888888888888877777766554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.6e-16 Score=170.58 Aligned_cols=312 Identities=13% Similarity=0.083 Sum_probs=253.5
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC-CcchHHHHHHH
Q 040643 530 LSIGNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA-NLYTFGSVVSA 605 (968)
Q Consensus 530 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 605 (968)
+..+..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.+. .| +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHH
Confidence 3456678889999999999999999764 346678999999999999999999999999876 34 44677788888
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCC--CChhHHhHH------------hhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHH
Q 040643 606 AANLANIKQGKQVHAMIIKTGYD--SETEASNSL------------ITLYAKCGSIDDAKREFLEMP---EKNEVSWNAM 668 (968)
Q Consensus 606 ~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~l 668 (968)
+...|++++|...+..+.+.... .+...+..+ ...|...|++++|.+.|+++. +.+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999875310 244445444 578899999999999999875 4578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-chHH---------
Q 040643 669 ITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-EHYA--------- 737 (968)
Q Consensus 669 i~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~y~--------- 737 (968)
...|...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+...+. .|+. ..+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 9999999999999999999998 5665 668889999999999999999999988654 4542 2222
Q ss_pred ---HHHHHHhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 738 ---CVVDLLGRAGCLSRAREFTEQM-PIEPD-A----MVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 738 ---~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
.++..+.+.|++++|.+.++++ ...|+ . ..|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3377799999999999999987 34444 3 2344566778899999999999999999999999999999999
Q ss_pred HhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 040643 809 YAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAE 874 (968)
Q Consensus 809 y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 874 (968)
|...|++++|.+..+...+. .|...++...|..+...+++
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHHHHHHHHHHH
Confidence 99999999999988776542 25555666667666666553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-16 Score=168.67 Aligned_cols=286 Identities=9% Similarity=0.031 Sum_probs=233.1
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHH
Q 040643 526 FSDDLSIGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSV 602 (968)
Q Consensus 526 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 602 (968)
.+.+..+...+...+...|++++|.++|+++.. .+...+..++..+.+.|++++|+.+++++.+.. ..+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345666777888888889999999999887653 355677778888899999999999999988752 2244566677
Q ss_pred HHHHhhhh-hHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH
Q 040643 603 VSAAANLA-NIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA 678 (968)
Q Consensus 603 l~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~ 678 (968)
...+...| +.++|...+..+++.. +.+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 77788888 8999999998888754 3457788899999999999999999999876 33567788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCC-------CCCcchHHHHHHHHhhcCChH
Q 040643 679 LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGL-------VPKPEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i-------~p~~~~y~~lv~~l~r~G~~~ 750 (968)
++|++.|++..+ ..|+ ..++..+...+...|++++|..+|+...+...- +.....+..++.++.+.|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998 5675 567888889999999999999999988664311 333678899999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHH-hhcCCc
Q 040643 751 RAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIY-AAAGKW 815 (968)
Q Consensus 751 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~ 815 (968)
+|.+.+++. ...| +..+|..+...+...|+.+.|...++++++++|+++..+..|+.+| ...|+-
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999999887 3444 4778888888899999999999999999999999999999999988 455553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=5.5e-16 Score=167.60 Aligned_cols=289 Identities=12% Similarity=0.102 Sum_probs=129.6
Q ss_pred HhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHH
Q 040643 159 AKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHG 238 (968)
Q Consensus 159 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 238 (968)
-++|++++|.+.+++++.|+ +|+.|..++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47899999999999997765 899999999999999999999976 3688899999999999999999999888
Q ss_pred HHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccH
Q 040643 239 LIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTV 318 (968)
Q Consensus 239 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 318 (968)
...+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 56688899999999999999999988864 78889999999999999999999999987 379
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHH
Q 040643 319 ASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLS 398 (968)
Q Consensus 319 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 398 (968)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 99999999999999999999877 378999999999999999999988877655 44444557899999999999
Q ss_pred HHHHHHHHHHhcC-CCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChh
Q 040643 399 ESFQIFKQMQTEG-LTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFG 477 (968)
Q Consensus 399 ~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 477 (968)
+|+.+++...... -.....|...++-+-.+.+.+.+..+.|...-+++...+.. .+...|..+.-.|.+.++++
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~-----~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA-----EQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH-----HTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH-----HHHHHHHHHHHHHHhhchHH
Confidence 9999999877443 11112233333333333333443333333322222222222 24567888888888888888
Q ss_pred HHHH
Q 040643 478 EALE 481 (968)
Q Consensus 478 ~A~~ 481 (968)
.|..
T Consensus 300 ~A~~ 303 (449)
T 1b89_A 300 NAII 303 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-15 Score=168.22 Aligned_cols=275 Identities=11% Similarity=0.019 Sum_probs=197.4
Q ss_pred HcCCHHHHHH-HHHhCCC---C----CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH
Q 040643 542 RCGRIQEAYL-VFNKIDA---K----DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 542 k~g~~~~A~~-~f~~m~~---~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
-.|++++|.. .|++... . +...|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455666665 5553321 1 23456666666777777777777777766542 223345555556666677777
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHH---------------HHHHHHhc
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNA---------------MITGFSQH 675 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~---------------li~~~~~~ 675 (968)
+|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++. .| +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777776666653 3456666777777777777777777777654 12 2222221 23334488
Q ss_pred CCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHH
Q 040643 676 GYALEAINLFEKMKKHDVMPN---HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSR 751 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~e 751 (968)
|++++|+..|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+. .|+ ...|..++.++.+.|++++
T Consensus 195 ~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 195 SLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998 5665 567888889999999999999999988654 454 6788999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-----------cchHHHHHHHHhhcCCcchH
Q 040643 752 AREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED-----------SATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 752 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~~~~a 818 (968)
|.+.++++ ...|+ ..+|..+...+...|+++.|...+++++++.|++ +..|..|+.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999887 44554 7888899999999999999999999999999988 78999999999999999999
Q ss_pred HHHHH
Q 040643 819 DQIRQ 823 (968)
Q Consensus 819 ~~~~~ 823 (968)
..+.+
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98755
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-15 Score=159.34 Aligned_cols=260 Identities=12% Similarity=0.084 Sum_probs=224.7
Q ss_pred CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHh
Q 040643 559 KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI 638 (968)
Q Consensus 559 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 638 (968)
.+...+..+...+...|++++|+++|+++.+.. ..+...+..+...+...|+.++|...+..+++.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888999999999999999999998763 2234455667788889999999999999998864 45678889999
Q ss_pred hHHHhcC-CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcH
Q 040643 639 TLYAKCG-SIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLV 713 (968)
Q Consensus 639 ~~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~ 713 (968)
..|...| ++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999865 34678899999999999999999999999998 5665 56788888999999999
Q ss_pred HHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCh
Q 040643 714 NEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PI----------EPDAMVWRTLLSACRVHKNM 781 (968)
Q Consensus 714 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~ 781 (968)
++|.++|+...+ +.|+ ...+..++.++.+.|++++|.+.++++ .. ..+..+|..+...+...|+.
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999998864 3455 678889999999999999999998876 11 33367899999999999999
Q ss_pred hHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 782 EIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+.|....++++++.|+++..+..++.+|...|++++|.+..+..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987744
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-13 Score=159.45 Aligned_cols=208 Identities=6% Similarity=-0.041 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHh-------cCCHH-------HHHHHHhcCCC---C-CHHHHHHHHHHHHhc
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAK-------CGSID-------DAKREFLEMPE---K-NEVSWNAMITGFSQH 675 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~f~~~~~---~-d~~~~~~li~~~~~~ 675 (968)
.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+...
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5566777777652 4567788888887775 68887 89999987652 4 578899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHH-HhhcCChHH
Q 040643 676 GYALEAINLFEKMKKHDVMPNH--VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDL-LGRAGCLSR 751 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~-l~r~G~~~e 751 (968)
|+.++|.++|+++++ +.|+. ..|...+..+.+.|.+++|+.+|+...+. .|. ...|...+-+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 67764 36788888888889999999999987643 444 2333332222 336899999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc----hHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 752 AREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA----TYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 752 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
|.+++++. ...| +..+|..++......|+.+.|...++++++..|.++. .+..........|+.+++.++.+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998876 3445 4788999998888899999999999999998777665 6666677778889999998887777
Q ss_pred Hh
Q 040643 826 KD 827 (968)
Q Consensus 826 ~~ 827 (968)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 55
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-13 Score=161.24 Aligned_cols=214 Identities=10% Similarity=0.068 Sum_probs=168.6
Q ss_pred hhHHHHHHHhhhcCCcCC-cchHHHHHHHHhh-------hhhHH-------HHHHHHHHHHHhCCCCChhHHhHHhhHHH
Q 040643 578 EGALQVFSQMTQVGVQAN-LYTFGSVVSAAAN-------LANIK-------QGKQVHAMIIKTGYDSETEASNSLITLYA 642 (968)
Q Consensus 578 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 642 (968)
++|+.+|++.... .|+ ...|......+.+ .|+++ +|+.++..+++.-.+.+..++..++..+.
T Consensus 255 ~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3677888887765 343 3445555555443 67776 88888888876333556889999999999
Q ss_pred hcCCHHHHHHHHhcCC--CC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHH-HcccCcHHHH
Q 040643 643 KCGSIDDAKREFLEMP--EK-NE-VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSA-CSHVGLVNEG 716 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~--~~-d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a-~~~~g~~~~a 716 (968)
+.|++++|.++|+++. .| +. ..|..++..+.+.|+.++|.++|++.++ ..|+ ...+...... +...|+.++|
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999875 34 43 5899999999999999999999999998 4554 3334433322 2358999999
Q ss_pred HHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 717 LRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD--AMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
..+|+...+. .|+ ...+..+++++.+.|+.++|..++++. |..|+ ..+|...+.....+|+.+.+..+.+
T Consensus 411 ~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 411 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999988765 354 778899999999999999999999986 45554 6799999999999999999999999
Q ss_pred HHHccCCCC
Q 040643 790 HLLELEPED 798 (968)
Q Consensus 790 ~~~~l~p~~ 798 (968)
++.+..|++
T Consensus 488 r~~~~~p~~ 496 (530)
T 2ooe_A 488 RRFTAFREE 496 (530)
T ss_dssp HHHHHTHHH
T ss_pred HHHHHCchh
Confidence 999999853
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-14 Score=154.27 Aligned_cols=239 Identities=9% Similarity=-0.035 Sum_probs=169.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCChhHHhHHhhHHHhcC
Q 040643 567 LISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGY-DSETEASNSLITLYAKCG 645 (968)
Q Consensus 567 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~k~g 645 (968)
+..+|...|++++|+..++.. -.|+..++..+...+...++.+.+.+.++.+++.+. +.+...+..+...|.+.|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 344445555555554433221 123334444444444455555555555555544443 224455666778899999
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH---HHHHHHHcccCcHHHHHHHHHH
Q 040643 646 SIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTF---VGVLSACSHVGLVNEGLRYFES 722 (968)
Q Consensus 646 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~---~~ll~a~~~~g~~~~a~~~~~~ 722 (968)
++++|.+.|++ ..+...|..++..|.+.|+.++|++.|+++.+ ..|+.... .+.+..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999 56788999999999999999999999999998 56875421 1233444566999999999999
Q ss_pred hhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH-HHHHHHHHHccCCCCc
Q 040643 723 MSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI-GEYAANHLLELEPEDS 799 (968)
Q Consensus 723 m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~l~p~~~ 799 (968)
+.+. .+++...|..++.++.+.|++++|++.+++. ...|+ +.+|..+...+...|+.+. +....+++++++|+++
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9776 2345778888999999999999999999886 55665 7788888888888888764 6788899999999988
Q ss_pred chHHHHHHHHhhcCCcchHH
Q 040643 800 ATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 800 ~~~~~l~~~y~~~g~~~~a~ 819 (968)
... +++.+.+.++++.
T Consensus 270 ~~~----d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 270 FIK----EYRAKENDFDRLV 285 (291)
T ss_dssp HHH----HHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHH
Confidence 654 4455556665554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-15 Score=162.95 Aligned_cols=285 Identities=12% Similarity=0.025 Sum_probs=216.8
Q ss_pred HHHhcCChhhHHH-HHHHhhhcCC-cC--CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcC
Q 040643 570 GFAQSGYCEGALQ-VFSQMTQVGV-QA--NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCG 645 (968)
Q Consensus 570 ~~~~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 645 (968)
++...|++++|++ .|++...... .| +...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3455688999998 8887654321 12 35667788889999999999999999999864 456788999999999999
Q ss_pred CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH-HHH---------------HHHH
Q 040643 646 SIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVT-FVG---------------VLSA 706 (968)
Q Consensus 646 ~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~---------------ll~a 706 (968)
++++|.+.|+++. +.+..+|..+...|...|++++|++.|+++.+ ..|+... +.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999875 45788999999999999999999999999999 5665432 221 2333
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIG 784 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 784 (968)
+...|++++|..+|+.+.+...-.++...+..++.++.+.|++++|.+.++++ ...|+ ..+|..+...+...|+++.|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 44899999999999999765333234788999999999999999999999987 44554 78999999999999999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHH
Q 040643 785 EYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDY 864 (968)
Q Consensus 785 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~ 864 (968)
...++++++++|+++..+..++.+|...|++++|.+..+...+.. |... + .....+|....++..
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~-----~------~~~~~~~~~~~~~~~ 335 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ----RKSR-----G------PRGEGGAMSENIWST 335 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----HTC-----------------CCCCCHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCC-----C------ccccccchhhHHHHH
Confidence 999999999999999999999999999999999999876664422 1110 0 001235667777777
Q ss_pred HHHHHHHH
Q 040643 865 LGNLNRRV 872 (968)
Q Consensus 865 l~~l~~~~ 872 (968)
|..+...+
T Consensus 336 l~~~~~~~ 343 (368)
T 1fch_A 336 LRLALSML 343 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76665544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-15 Score=162.82 Aligned_cols=228 Identities=12% Similarity=0.018 Sum_probs=182.5
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 040643 597 YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFS 673 (968)
Q Consensus 597 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~ 673 (968)
..+......+.+.|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|+++. ..+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 335555555666666666666666665543 4466778889999999999999999999876 346889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChH-HH----------HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 674 QHGYALEAINLFEKMKKHDVMPNHV-TF----------VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd~~-t~----------~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
..|++++|++.|+++.+ +.|+.. .+ ..+...+...|++++|..+|+.+.+...-.++...+..++.+
T Consensus 145 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999998 566533 22 234778999999999999999997763332357889999999
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH
Q 040643 743 LGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
|.+.|++++|.+.++++ ...|+ ..+|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999987 44554 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 040643 821 IRQIMKD 827 (968)
Q Consensus 821 ~~~~m~~ 827 (968)
..+...+
T Consensus 303 ~~~~al~ 309 (365)
T 4eqf_A 303 NFLTALS 309 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.8e-15 Score=164.74 Aligned_cols=257 Identities=11% Similarity=-0.026 Sum_probs=198.1
Q ss_pred CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 560 DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 560 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
+...|..+...+.+.|++++|+.+|+++.+.. ..+..++..+...+...|++++|...+..+++.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557777778888888888888888877653 2244566677777778888888888888777754 345677888888
Q ss_pred HHHhcCCHHHHHHHHhcCCC--CC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMPE--KN-----------EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN---HVTFVGV 703 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~~--~d-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~l 703 (968)
.|.+.|++++|.+.|+++.+ |+ ...++.+...|...|++++|++.|+++.+ ..|+ ..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHHH
Confidence 88888888888888887652 21 22334457888899999999999999998 4564 6688888
Q ss_pred HHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 040643 704 LSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKN 780 (968)
Q Consensus 704 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 780 (968)
...+...|++++|..+|+.+.+. .|+ ...|..++.+|.+.|++++|.+.++++ ...|+ ..+|..+...+...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 88999999999999999988654 444 778899999999999999999999887 45565 8889999999999999
Q ss_pred hhHHHHHHHHHHccCCC------------CcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 781 MEIGEYAANHLLELEPE------------DSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
.+.|...+++++++.|+ +...+..|+.+|...|+.+.+.++.+
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999987 36789999999999999998887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-13 Score=155.54 Aligned_cols=268 Identities=9% Similarity=-0.015 Sum_probs=194.3
Q ss_pred hhhhhHHHHHHH----cCCHHHHHHHHHhCCC-CCcccHHHHHHHHHh----cCChhhHHHHHHHhhhcCCcCCcchHHH
Q 040643 531 SIGNALISLYAR----CGRIQEAYLVFNKIDA-KDNISWNGLISGFAQ----SGYCEGALQVFSQMTQVGVQANLYTFGS 601 (968)
Q Consensus 531 ~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 601 (968)
..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.+ .++.++|+++|++..+.| +...+..
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344455556655 5677777777765433 355566667777766 677777777777776654 2334444
Q ss_pred HHHHHhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHH
Q 040643 602 VVSAAAN----LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAK----CGSIDDAKREFLEMPE-KNEVSWNAMITGF 672 (968)
Q Consensus 602 ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~-~d~~~~~~li~~~ 672 (968)
+-..+.. .++.++|...+....+.+ +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...|
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444443 567777777777776654 44556667777777 7899999999988763 4677888888888
Q ss_pred Hhc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC---cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHh
Q 040643 673 SQH-----GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG---LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLG 744 (968)
Q Consensus 673 ~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 744 (968)
... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|+...+. .+...+..+..+|.
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALL 374 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 877 89999999999998865 4456666666666656 789999999988653 35677888888888
Q ss_pred h----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCC---CcchHHHHHHHHhh
Q 040643 745 R----AGCLSRAREFTEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLELEPE---DSATYVLLSNIYAA 811 (968)
Q Consensus 745 r----~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 811 (968)
. .+++++|.+.+++.--..++..|..|...+.. .+|.+.|....+++++.+|+ ++.....|+.++..
T Consensus 375 ~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 375 QGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8 89999999999887333457777777777776 78999999999999999954 77777778777664
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.4e-16 Score=181.76 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=102.9
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMP-------EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTF 700 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~ 700 (968)
..-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886642 578888888888888888888888888888888888888888
Q ss_pred HHHHHHHcccCc-HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 701 VGVLSACSHVGL-VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 701 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
++||.++++.|. .++|.++|++|.+. |+.|+..+|+|++....|.+-++...++...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 888888888887 47788888888665 8888888888888777777665555544333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-14 Score=149.37 Aligned_cols=244 Identities=10% Similarity=-0.011 Sum_probs=196.8
Q ss_pred HHHHhcCChhhHHHHHHHhhhcCCcCCc--chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCC
Q 040643 569 SGFAQSGYCEGALQVFSQMTQVGVQANL--YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGS 646 (968)
Q Consensus 569 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 646 (968)
.-....|++..|+..+++.... .|+. .....+..++...|+.+.+...+.. .-+|+......+...|.+.|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3455678899999988776543 3443 3445677899999999998875533 235567788889999999999
Q ss_pred HHHHHHHHhcCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHH
Q 040643 647 IDDAKREFLEMP----EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFE 721 (968)
Q Consensus 647 ~~~A~~~f~~~~----~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~ 721 (968)
.++|.+.++++. .| +...|..+...|...|++++|++.|++ .++...+..+...+...|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999863 24 567788888999999999999999987 3456688888999999999999999999
Q ss_pred HhhhhcCCCCCcch---HHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 040643 722 SMSTEYGLVPKPEH---YACVVDLLGRAGCLSRAREFTEQM-P-IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 722 ~m~~~~~i~p~~~~---y~~lv~~l~r~G~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
.+.+. .|+... ..+.+.++...|++++|..+++++ . .++++.+|..+..++...|+++.|+...+++++++|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99765 466321 123456666679999999999998 2 334688999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHhhcCCcchH-HHHHHHHHh
Q 040643 797 EDSATYVLLSNIYAAAGKWDCR-DQIRQIMKD 827 (968)
Q Consensus 797 ~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~~ 827 (968)
+++.++..++.++...|+++++ .++++.+.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999874 567665554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=7e-16 Score=179.19 Aligned_cols=151 Identities=10% Similarity=0.080 Sum_probs=103.6
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
.++||+||.+|++.|+.++|.++|.+|.+. .+.|+.||+.+||+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~G 174 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLG 174 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHH
Confidence 357888888888888888888888776532 122344455555555556
Q ss_pred HHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHH
Q 040643 641 YAKCGSIDDAKREFLEMP----EKNEVSWNAMITGFSQHGY-ALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 715 (968)
|++.|++++|.++|++|. .||++|||+||.++++.|+ .++|.++|++|.+.|+.||.+||+++++++.+.+.++.
T Consensus 175 lck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence 666666666666666654 5677788888888888887 47889999999999999999999999987776655544
Q ss_pred HHHHHHHhhhhcCCC----CCcchHHHHHHHHhhcC
Q 040643 716 GLRYFESMSTEYGLV----PKPEHYACVVDLLGRAG 747 (968)
Q Consensus 716 a~~~~~~m~~~~~i~----p~~~~y~~lv~~l~r~G 747 (968)
.. .+..+|... |...+...|.|+|.+.|
T Consensus 255 Vr----kv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 255 VH----KVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HG----GGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HH----HhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 44 443333332 22445556788998876
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-13 Score=156.83 Aligned_cols=363 Identities=13% Similarity=0.040 Sum_probs=244.1
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHhc-----C--CCC-ChhhHHHHHHHhhcccchhhhhhhhHhhhhhcC-----
Q 040643 460 VVSWTAMIVGFVQHGMFGEALELFEEMENQ-----G--IQS-DNIGFSSAISACAGIQALNQGRQIHAQSYISGF----- 526 (968)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~----- 526 (968)
...||.|...+...|++++|++.|++..+. + ..| ...+|..+-.++...|+++.|...+..+.+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456899999999999999999999886542 1 123 345788888899999999999988887765321
Q ss_pred -CC-CchhhhhHHHHHHHcC--CHHHHHHHHHhCC---CCCcccHHHHHHH---HHhcCChhhHHHHHHHhhhcCCcCCc
Q 040643 527 -SD-DLSIGNALISLYARCG--RIQEAYLVFNKID---AKDNISWNGLISG---FAQSGYCEGALQVFSQMTQVGVQANL 596 (968)
Q Consensus 527 -~~-~~~~~~~Li~~y~k~g--~~~~A~~~f~~m~---~~d~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~ 596 (968)
.+ ...+++.+..++.+.| ++++|...|++.. ..+...+..+... +...++.++|++.|++..+. .|+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcc
Confidence 11 2234555555565554 6899999998764 2345556555544 34567888999999887764 4544
Q ss_pred -chHHHHHHHHhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--C-CCHHHHHHH
Q 040643 597 -YTFGSVVSAAAN----LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--E-KNEVSWNAM 668 (968)
Q Consensus 597 -~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~-~d~~~~~~l 668 (968)
.++..+...+.. .++.++|.+.+..+.+.. +.+..++..+...|.+.|++++|.+.|++.. . .+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 333333334433 457788999988887764 4567788899999999999999999999876 3 356677777
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcC
Q 040643 669 ITGFSQH-------------------GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYG 728 (968)
Q Consensus 669 i~~~~~~-------------------g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 728 (968)
...|... +..++|+..|++..+ ..|+ ..++..+...+...|++++|..+|++..+.
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 6666432 346778888988887 5676 457888899999999999999999987543
Q ss_pred CCCCcc----hHHHHHH-HHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 729 LVPKPE----HYACVVD-LLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 729 i~p~~~----~y~~lv~-~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
.|+.. .+..+.. .+...|+.++|.+.+++. .+.|+...+...+ +.++..+++.++.+|+++.+|
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK---------DKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHH
Confidence 44422 1233333 345789999999998876 6778765554433 445677889999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEE
Q 040643 803 VLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWI 839 (968)
Q Consensus 803 ~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 839 (968)
..|+.+|...|++++|.+..++.-+.|-.-....||+
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999998776655554333345554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.3e-14 Score=154.16 Aligned_cols=251 Identities=9% Similarity=0.024 Sum_probs=170.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhh
Q 040643 532 IGNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAAN 608 (968)
Q Consensus 532 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 608 (968)
.+..+...+...|++++|..+|+++. ..+...|..+...|.+.|++++|++.|+++.+. .|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~-------------- 86 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DP-------------- 86 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Cc--------------
Confidence 33445555566666666666665543 223445555555555566666666655555443 12
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHH--------------HH-
Q 040643 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAM--------------IT- 670 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~l--------------i~- 670 (968)
.+...+..+...|.+.|++++|.+.|+++. .| +...+..+ ..
T Consensus 87 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 87 --------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 233344444445555555555555554433 11 11122221 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCC
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGC 748 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~ 748 (968)
.+...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+. .|+ ...+..++.++.+.|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALE--MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCC
Confidence 26677888888888888887 4554 567778888888888888888888887654 344 6678888889999999
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------------CcchHHHHHHHHhhcCC
Q 040643 749 LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE------------DSATYVLLSNIYAAAGK 814 (968)
Q Consensus 749 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~ 814 (968)
+++|.+.++++ ...|+ ..+|..+...+...|+.+.|...+++++++.|+ ++..+..++.+|...|+
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99999888886 44454 788888888999999999999999999999999 78899999999999999
Q ss_pred cchHHHHHH
Q 040643 815 WDCRDQIRQ 823 (968)
Q Consensus 815 ~~~a~~~~~ 823 (968)
+++|..+.+
T Consensus 302 ~~~A~~~~~ 310 (327)
T 3cv0_A 302 PDLVELTYA 310 (327)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999988754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.56 E-value=3e-12 Score=147.48 Aligned_cols=351 Identities=13% Similarity=0.049 Sum_probs=285.7
Q ss_pred CCceeHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhc----ccchhhhhhhhHhhhhhcCCCC
Q 040643 458 DDVVSWTAMIVGFVQ----HGMFGEALELFEEMENQGIQSDNIGFSSAISACAG----IQALNQGRQIHAQSYISGFSDD 529 (968)
Q Consensus 458 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~ 529 (968)
.+..++..+...|.. .+++++|+.+|++..+.| +...+..+-..+.. .++.+.|.+.+..+.+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 456677777778887 899999999999988764 34455555566666 789999999999998876 5
Q ss_pred chhhhhHHHHHHH----cCCHHHHHHHHHhCCCC-CcccHHHHHHHHHh----cCChhhHHHHHHHhhhcCCcCCcchHH
Q 040643 530 LSIGNALISLYAR----CGRIQEAYLVFNKIDAK-DNISWNGLISGFAQ----SGYCEGALQVFSQMTQVGVQANLYTFG 600 (968)
Q Consensus 530 ~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 600 (968)
...+..|..+|.. .++.++|...|++..+. +..++..|...|.. .++.++|+++|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6677788899988 88999999999886544 66688888888887 789999999999998765 455666
Q ss_pred HHHHHHhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHh----cCCHHHHHHHHhcCC-CCCHHHHHHHHHH
Q 040643 601 SVVSAAAN----LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAK----CGSIDDAKREFLEMP-EKNEVSWNAMITG 671 (968)
Q Consensus 601 ~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~ 671 (968)
.+-..+.. .++.++|...+....+.+ +......|..+|.. .++.++|.+.|++.. ..+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666 789999999999998865 56677888888886 899999999999876 4567788888888
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHccc-----CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 672 FSQ----HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHV-----GLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 672 ~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. + +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998764 445666677777766 8999999999988653 2 34567778888
Q ss_pred HhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh----
Q 040643 743 LGRAG---CLSRAREFTEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA---- 811 (968)
Q Consensus 743 l~r~G---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 811 (968)
|.+.| ++++|.+.+++.--..++..|..|...+.. .+|.+.|....+++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 889999999987333668888888888887 899999999999998864 68899999999999
Q ss_pred cCCcchHHHHHHHHHhCC
Q 040643 812 AGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~~g 829 (968)
.+++++|.+..+...+.|
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999877776655
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.53 E-value=8.2e-13 Score=143.05 Aligned_cols=256 Identities=13% Similarity=0.081 Sum_probs=166.5
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHH
Q 040643 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALIS 538 (968)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 538 (968)
+...|..+...+.+.|++++|+.+|+++.+.. |+ +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 63 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE----------------------------------REEAWRSLGL 63 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----------------------------------CHHHHHHHHH
Confidence 45577888889999999999999999987742 32 2334455666
Q ss_pred HHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHH------------
Q 040643 539 LYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVV------------ 603 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll------------ 603 (968)
.|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++... .|+.......+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHH
Confidence 6777777777777776553 235567777888888888888888888887764 33332222222
Q ss_pred --HH--HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcC
Q 040643 604 --SA--AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHG 676 (968)
Q Consensus 604 --~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g 676 (968)
.. +...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 22 556677777777777776653 3355666667777777777777777776654 334566777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-------------cchHHHHHHH
Q 040643 677 YALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-------------PEHYACVVDL 742 (968)
Q Consensus 677 ~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-------------~~~y~~lv~~ 742 (968)
++++|++.|+++.+ ..|+ ..++..+...+...|++++|.++|+.+.+. .|+ ...|..+..+
T Consensus 221 ~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 221 RPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHH
Confidence 77777777777766 4454 445666666677777777777777665443 222 3445555666
Q ss_pred HhhcCChHHHHHHHHh
Q 040643 743 LGRAGCLSRAREFTEQ 758 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~ 758 (968)
+.+.|+.++|.+++++
T Consensus 296 ~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHTTCHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHH
Confidence 6666666666665554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-13 Score=136.74 Aligned_cols=191 Identities=13% Similarity=0.054 Sum_probs=158.1
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHH
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGV 703 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~l 703 (968)
+++...+..+...|.+.|++++|...|++.. ..+...|..+...+...|+.++|+..|++.++ +.|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 4567778888899999999999999999765 34778999999999999999999999999998 67874 578888
Q ss_pred HHHHccc-----------CcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 040643 704 LSACSHV-----------GLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRT 770 (968)
Q Consensus 704 l~a~~~~-----------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ 770 (968)
..++... |++++|...|+...+. .|+ ...+..+..+|.+.|++++|.+.+++. .+..++.+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 9999999999988654 676 677888999999999999999999987 22277899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 771 LLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 771 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987655
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-12 Score=146.60 Aligned_cols=381 Identities=9% Similarity=-0.036 Sum_probs=214.5
Q ss_pred hhhHhHHHHHHHhcCChhHHHHHHhhCC------------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 040643 350 IIVEGSMLDLYVKCSDVETAYKFFLTTE------------TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQY 417 (968)
Q Consensus 350 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 417 (968)
...+|.|...|...|+.++|++.|++.. ....++|+.+...|...|++++|...+++..+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i------- 123 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV------- 123 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------
Confidence 3455666666666666666666664421 123567888888888888888888888766432
Q ss_pred chhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCC----CCceeHHHHHHHHHh--cCChhHHHHHHHHHHhcCC
Q 040643 418 TYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPE----DDVVSWTAMIVGFVQ--HGMFGEALELFEEMENQGI 491 (968)
Q Consensus 418 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~ 491 (968)
...... ....+++.+..++.. .+++++|++.|++..+.
T Consensus 124 ----------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-- 167 (472)
T 4g1t_A 124 ----------------------------------CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-- 167 (472)
T ss_dssp ----------------------------------HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--
T ss_pred ----------------------------------hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--
Confidence 111110 011234444444444 35689999999998874
Q ss_pred CCChhh-HHHHHHH---hhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH----cCCHHHHHHHHHhCC---CCC
Q 040643 492 QSDNIG-FSSAISA---CAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR----CGRIQEAYLVFNKID---AKD 560 (968)
Q Consensus 492 ~pd~~t-~~~ll~a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~---~~d 560 (968)
.|+... +..+..+ ....+..+.+.+.+..+++..+. +..++..+...+.. .|+.++|.+.+++.. ..+
T Consensus 168 ~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~ 246 (472)
T 4g1t_A 168 KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246 (472)
T ss_dssp STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH
Confidence 565433 3333333 33445567777777777776543 44455555555544 456788888887653 346
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
...|..+...|.+.|++++|+..|++..+. .|+... +..+-..+...+.... . ........
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~---------~-------~~~~~~~~ 308 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVM---------N-------LRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHH---------H-------C------C
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhh---------h-------HHHHHHHH
Confidence 667888999999999999999999998765 565433 2222222211111000 0 00011111
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHHHHHH-HHcccC
Q 040643 640 LYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFVGVLS-ACSHVG 711 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~-a~~~~g 711 (968)
.....+..++|...|++.. ..+..+|..+...|...|++++|++.|++.++. .|+.. .+..+.. ...+.|
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCC
Confidence 2222344677777777654 345668888999999999999999999999984 44432 2333332 345789
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
+.++|+..|++.. .+.|+..... +.++.+.+++++. ...| ++.+|..|...+...|+.+.|....+
T Consensus 387 ~~~~Ai~~y~kal---~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 387 CEDKAIHHFIEGV---KINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp CHHHHHHHHHHHH---HSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHH---hcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998765 3566643222 2223334444433 2334 36788888889999999999999999
Q ss_pred HHHccCCCCcchHHHHH
Q 040643 790 HLLELEPEDSATYVLLS 806 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~ 806 (968)
++++++|.++.++.-++
T Consensus 455 kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 455 RGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----------------
T ss_pred HHHhcCCCCCcHhhcCC
Confidence 99999999988776554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-12 Score=135.13 Aligned_cols=216 Identities=12% Similarity=0.068 Sum_probs=155.3
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA 642 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 642 (968)
.|..+...+...|++++|+..|++..+.. ++ ...+..+...|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------------------------~~~~~~~~~~~~ 49 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KD-----------------------------------ITYLNNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC-----------------------------------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc-----------------------------------HHHHHHHHHHHH
Confidence 45555666666666666666666655543 33 344445555555
Q ss_pred hcCCHHHHHHHHhcCCC--C----C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc
Q 040643 643 KCGSIDDAKREFLEMPE--K----N----EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL 712 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~~--~----d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 712 (968)
..|++++|.+.|++..+ | + ...|..+...|...|++++|++.|+++.+ +.|+.. .+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhH
Confidence 55555555555555431 1 1 46777788888888888888888888887 566643 3445577
Q ss_pred HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
+++|...++.+... .|+ ...+..++.++.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++
T Consensus 121 ~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88888888877542 444 566778888888888888888888876 3344 47788888888899999999999999
Q ss_pred HHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 790 HLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887665543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-12 Score=134.64 Aligned_cols=234 Identities=13% Similarity=0.068 Sum_probs=150.1
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHhCCC--CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCC--cCC----cchHHH
Q 040643 530 LSIGNALISLYARCGRIQEAYLVFNKIDA--KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGV--QAN----LYTFGS 601 (968)
Q Consensus 530 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~~ 601 (968)
...+..+...|...|++++|...|++... .+...|..+...|...|++++|++.|++..+... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 35677889999999999999999986532 6677899999999999999999999999876421 111 233334
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040643 602 VVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEA 681 (968)
Q Consensus 602 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 681 (968)
+...+...|++++|...+..+.+. .|+. ..+...|+.++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~---------------------------------~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE---------------------------------HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---------------------------------CCCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc---------------------------------Cchh-------HHHHHHhHHHHH
Confidence 444444444444444444444442 2221 223444555666
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 682 INLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 682 ~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
++.++++.. ..|+ ...+..+...+...|++++|..+|+...+. .|+ ...|..++.++.+.|++++|.+.+++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666666655 4444 234555555666666666666666655433 222 455666666666666666666666655
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCcchHHHHHHH
Q 040643 760 -PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELE------PEDSATYVLLSNI 808 (968)
Q Consensus 760 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~ 808 (968)
...|+ ..+|..+...+...|+.+.|....+++++++ |++...+..|..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 33344 6677777777778888888888888888888 7777666666543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.2e-12 Score=135.77 Aligned_cols=239 Identities=8% Similarity=-0.120 Sum_probs=181.4
Q ss_pred cCChhhHHHHHHHhhhcCC--cC-CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGV--QA-NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDA 650 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 650 (968)
.|++++|+..|+++.+... .| +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566677777777665421 11 23455566666667777777777777776653 34577888888999999999999
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 651 KREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 651 ~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
.+.|+++. +.+...|..+...|...|++++|++.|+++.+ ..|+.......+..+...|++++|..+|+.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 99999876 34678999999999999999999999999998 6787766666666667789999999999877654
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 728 GLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 728 ~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.|+......++..+...++.++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|++...
T Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 --SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp --SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 333333344778888888899999988876 44442 5788888888999999999999999999999988654
Q ss_pred HHHHHHHHhhcCCcchHHHH
Q 040643 802 YVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 802 ~~~l~~~y~~~g~~~~a~~~ 821 (968)
+ +.++...|++++|.+-
T Consensus 252 ~---~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDD 268 (275)
T ss_dssp H---HHHHHHHHHHHHC---
T ss_pred H---HHHHHHHHHHHhhHHH
Confidence 4 6678888888887654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-12 Score=133.83 Aligned_cols=254 Identities=10% Similarity=0.032 Sum_probs=141.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc--hHHHHHHHH
Q 040643 532 IGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY--TFGSVVSAA 606 (968)
Q Consensus 532 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~ 606 (968)
+.......|.+.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++.....-.|+.. .+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556677777777777777776532 345567777777777777777777777776633222211 244555555
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHH
Q 040643 607 ANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAIN 683 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~ 683 (968)
...|+.++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665543 22344555555666666666666666655441 234455555422223345566666
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHHcccCc---HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 684 LFEKMKKHDVMPN-HVTFVGVLSACSHVGL---VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 684 l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
.|+++.+ ..|+ ...+..+..++...|. .++|...|+...+...-.|+.. -
T Consensus 164 ~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~----------------------- 217 (272)
T 3u4t_A 164 SFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K----------------------- 217 (272)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-----------------------
T ss_pred HHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-----------------------
Confidence 6655555 4444 2334444444444443 4444444443322211111100 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 760 PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 760 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
..-..+|..+...+...|+.+.|...++++++++|+|+.+.-.+..+....+.
T Consensus 218 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 218 --DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 00024566677778889999999999999999999999888888777665543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.3e-12 Score=129.55 Aligned_cols=195 Identities=11% Similarity=-0.006 Sum_probs=155.8
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSA 706 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a 706 (968)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--SDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHH
Confidence 4556677778888888888888888765 34677888888888888888999988888887 4554 5577778888
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 783 (968)
+...|++++|.++|+.+.+ .+..|. ...+..++.++.+.|++++|.+.++++ ...|+ ..+|..+...+...|+.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8888899999988888765 234554 667778888888889999998888876 33443 7778888888888899999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 784 GEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
|...++++++..|++...+..++.+|...|++++|.+..+.+.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999988888899999999999999998887776553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-11 Score=125.69 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=144.7
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|+.++|++.|+++.+ ..|+ ..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 34556667777777888888888777654 33566777788888888888888888888877 4554 456777777
Q ss_pred HHccc-CcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 040643 706 ACSHV-GLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNM 781 (968)
Q Consensus 706 a~~~~-g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 781 (968)
.+... |++++|..+|+.+.+ .+..|+ ...+..++.++.+.|++++|.+.++++ ...|+ ..+|..+...+...|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 77888 888888888887765 233444 566777778888888888888887776 33444 67777777778888888
Q ss_pred hHHHHHHHHHHccCC-CCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 782 EIGEYAANHLLELEP-EDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+.|....++++++.| +++..+..++.+|...|++++|....+.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888888888 8888888888888888888888887777654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-11 Score=135.61 Aligned_cols=243 Identities=9% Similarity=0.053 Sum_probs=191.0
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhh-HHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLAN-IKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
..|+.+...+.+.|++++|++.|++.... .|+. ..|..+-.++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 35666677777777778888877777654 4543 445555666677775 888888887777754 346778888889
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcc-cCcHH
Q 040643 640 LYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSH-VGLVN 714 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~-~g~~~ 714 (968)
.|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|+++++ +.|+ ...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999876 45788999999999999999999999999999 7786 5578888888888 66657
Q ss_pred HH-----HHHHHHhhhhcCCCCC-cchHHHHHHHHhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 040643 715 EG-----LRYFESMSTEYGLVPK-PEHYACVVDLLGRAG--CLSRAREFTEQMPIEPD-AMVWRTLLSACRVHK------ 779 (968)
Q Consensus 715 ~a-----~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G--~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g------ 779 (968)
+| +.+|+...+ +.|+ ...|..+..+|.+.| ++++|.++++++...|+ ..++..|...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 477877654 4676 667888888999988 68999999988866676 677777777776653
Q ss_pred --C-hhHHHHHHHHH-HccCCCCcchHHHHHHHHhhc
Q 040643 780 --N-MEIGEYAANHL-LELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 780 --~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 812 (968)
+ ++.|..+.+++ ++++|.+...|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999999999988876643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-11 Score=123.63 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=155.0
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
...|..+...|...|++++|++.|+++.... | .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence 3467777888888889999988888876542 2 233345556666
Q ss_pred HHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHH
Q 040643 641 YAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a 716 (968)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666777777777776654 33566778888888888888888888888877445665 44677777788888888888
Q ss_pred HHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 040643 717 LRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLE 793 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 793 (968)
..+|+.+.+. .|+ ...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|....+++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888877654 343 667788888899999999999888886 4444 467777787888899999999999999999
Q ss_pred cCCCCcchHHHH
Q 040643 794 LEPEDSATYVLL 805 (968)
Q Consensus 794 l~p~~~~~~~~l 805 (968)
+.|+++.....+
T Consensus 238 ~~p~~~~~~~~l 249 (252)
T 2ho1_A 238 LYPGSLEYQEFQ 249 (252)
T ss_dssp HCTTSHHHHHHH
T ss_pred HCCCCHHHHHHH
Confidence 999988765544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.4e-11 Score=124.33 Aligned_cols=225 Identities=9% Similarity=-0.049 Sum_probs=175.8
Q ss_pred hHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC--CCcc----cHHHHHHH
Q 040643 497 GFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA--KDNI----SWNGLISG 570 (968)
Q Consensus 497 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~----~~~~li~~ 570 (968)
.+...-..+...|+++.|...+..+++.... +..++..+...|...|++++|...|++... .+.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4445566778899999999999999987643 566788899999999999999999987654 2322 38899999
Q ss_pred HHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHh-hHHHhcCCHHH
Q 040643 571 FAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI-TLYAKCGSIDD 649 (968)
Q Consensus 571 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~y~k~g~~~~ 649 (968)
|...|++++|++.|++..+.. ..+..++..+...+...|++++|...+..+++.. +.+...+..+. ..|. .+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHHH
Confidence 999999999999999998753 2244677888889999999999999998887752 44567777777 5555 459999
Q ss_pred HHHHHhcCC---CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCCh------HHHHHHHHHHcccCcHHHH
Q 040643 650 AKREFLEMP---EKNEVSWNAMITGFSQHGY---ALEAINLFEKMKKHD-VMPNH------VTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 650 A~~~f~~~~---~~d~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~Pd~------~t~~~ll~a~~~~g~~~~a 716 (968)
|.+.|+++. +.+...|..+...+...|+ .++|+..|++..+.. -.|+. .++..+...+...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999876 3357788889999988888 888999999988731 12442 3566666677777777777
Q ss_pred HHHHHHhhh
Q 040643 717 LRYFESMST 725 (968)
Q Consensus 717 ~~~~~~m~~ 725 (968)
.++|++..+
T Consensus 241 ~~~~~~al~ 249 (272)
T 3u4t_A 241 DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776643
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.9e-11 Score=120.36 Aligned_cols=209 Identities=12% Similarity=0.028 Sum_probs=157.1
Q ss_pred CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 560 DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 560 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
+...|..+...|...|++++|++.|+++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34456666666666777777776666665431 223445566667
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHH
Q 040643 640 LYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQH-GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVN 714 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~ 714 (968)
.|...|++++|.+.|+++. ..+..+|..+...|... |++++|++.|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777654 34667888888888899 999999999999888444555 456778888888999999
Q ss_pred HHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 715 EGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP--DAMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 715 ~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
+|..+|+.+.+. .|+ ...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.+....+.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999887654 444 677888899999999999999998887 3344 466676666678899999999999999
Q ss_pred HHccCCCCcchHHHHHH
Q 040643 791 LLELEPEDSATYVLLSN 807 (968)
Q Consensus 791 ~~~l~p~~~~~~~~l~~ 807 (968)
+.++.|+++.....+.+
T Consensus 208 ~~~~~p~~~~~~~~l~~ 224 (225)
T 2vq2_A 208 LQANFPYSEELQTVLTG 224 (225)
T ss_dssp HHHHCTTCHHHHHHHC-
T ss_pred HHHhCCCCHHHHHHhcc
Confidence 99999999888776643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=127.05 Aligned_cols=175 Identities=12% Similarity=0.053 Sum_probs=104.1
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHc
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACS 708 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~ 708 (968)
.+..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..| +...+..+...+.
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 34444455555555555555555443 23455666666666666666666666666666 334 3445555666666
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVP-KPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGE 785 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 785 (968)
..|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.|.
T Consensus 137 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 666666666666665433 22 2455666666666777777777666665 2233 3566666666777777777777
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 786 YAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 786 ~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
...+++++++|+++..+..++.+....
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 777777777777777766666555443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=126.37 Aligned_cols=195 Identities=9% Similarity=0.076 Sum_probs=153.0
Q ss_pred CChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 040643 629 SETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVL 704 (968)
Q Consensus 629 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll 704 (968)
.....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcchHHHHHHH
Confidence 345567778888999999999999999875 34688999999999999999999999999998 5664 56788888
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNME 782 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 782 (968)
..+...|++++|.++|+.+.+.. +.+...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987642 234677888999999999999999999987 4444 4788888888999999999
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.|...++++++..|+++..+..++.+|...|++++|.+..+...+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999998776654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=5.9e-11 Score=130.19 Aligned_cols=221 Identities=10% Similarity=0.069 Sum_probs=189.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCC-HHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 040643 598 TFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGS-IDDAKREFLEMP---EKNEVSWNAMITGFS 673 (968)
Q Consensus 598 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~-~~~A~~~f~~~~---~~d~~~~~~li~~~~ 673 (968)
.+..+-..+...|+.++|...+..+++.. +.+..+|+.+...|.+.|+ +++|.+.|+++. ..+...|+.+...+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555666778899999999999999865 4467889999999999997 999999999876 457889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhh-cCChH
Q 040643 674 QHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGR-AGCLS 750 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r-~G~~~ 750 (968)
..|++++|+..|+++++ +.|+ ...|..+..++.+.|++++|+.+|+++.+. .|+ ...|..+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 7886 558999999999999999999999998754 666 7788889999999 67768
Q ss_pred HH-----HHHHHhC-CCCCC-HHHHHHHHHHHHhcC--ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC--------
Q 040643 751 RA-----REFTEQM-PIEPD-AMVWRTLLSACRVHK--NMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG-------- 813 (968)
Q Consensus 751 eA-----~~~~~~m-~~~p~-~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-------- 813 (968)
+| ++.+++. .+.|+ ..+|..+...+...| +.+.|...++++ +++|+++..+..|+.+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4666665 56776 889999988888888 689999999998 999999999999999999985
Q ss_pred -CcchHHHHHHHH
Q 040643 814 -KWDCRDQIRQIM 825 (968)
Q Consensus 814 -~~~~a~~~~~~m 825 (968)
..++|.++.+.+
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 257888887776
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-10 Score=131.80 Aligned_cols=343 Identities=13% Similarity=0.041 Sum_probs=216.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch---hhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 466 MIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQAL---NQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 466 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
+...+.+.|++++|+++|++..+.|-.+-... +-..+...|+. ++|.+.+..+.+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~---Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVG---LADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGT---CC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH---HHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 55667788999999999999988763222222 22223335555 7888888887755 44555666665555
Q ss_pred cC-----CHHHHHHHHHhCCCC-CcccHHHHHHHHHhcCChh---hHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH
Q 040643 543 CG-----RIQEAYLVFNKIDAK-DNISWNGLISGFAQSGYCE---GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 543 ~g-----~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
.| +.++|...|++...+ +..++..|...|...+..+ ++++.+......|. ......+-..+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 54 778898888876544 5568888888888776544 44555555444442 334444555555555444
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcC---CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc----CCHHHHHH
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCG---SIDDAKREFLEMP---EKNEVSWNAMITGFSQH----GYALEAIN 683 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~----g~~~~A~~ 683 (968)
.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++.. .++...+..+...|... ++.++|++
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 33333333333223344557888889999999 8899999998765 34555557777777554 68999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHH-H--cccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcC-----ChHHHHHH
Q 040643 684 LFEKMKKHDVMPNHVTFVGVLSA-C--SHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAG-----CLSRAREF 755 (968)
Q Consensus 684 l~~~m~~~g~~Pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G-----~~~eA~~~ 755 (968)
.|++.. .| +...+..+... + ...|+.++|.++|++..+. | +...+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999986 22 34455555554 3 5588999999999987543 3 4566777777776 55 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh----cCCcchHHHHHHHHHh
Q 040643 756 TEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA----AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 756 ~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~ 827 (968)
+++.. .-++..+..|...+.. ..|.+.|...++++.+ +.++..+..|+.+|.. ..+.++|....+.-.+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99987 4456666666555544 3388999999999876 4578888999999985 4577888888777776
Q ss_pred CCC
Q 040643 828 RGV 830 (968)
Q Consensus 828 ~g~ 830 (968)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 663
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=140.74 Aligned_cols=204 Identities=9% Similarity=-0.011 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCH-HHHHHHHhcCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040643 612 IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSI-DDAKREFLEMP--E-KNEVSWNAMITGFSQHGYALEAINLFEK 687 (968)
Q Consensus 612 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~-~~A~~~f~~~~--~-~d~~~~~~li~~~~~~g~~~~A~~l~~~ 687 (968)
++.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++.. . .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444433332 234677888888899999999 99999999875 3 4678999999999999999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHccc---------CcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc--------CCh
Q 040643 688 MKKHDVMPNHVTFVGVLSACSHV---------GLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA--------GCL 749 (968)
Q Consensus 688 m~~~g~~Pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~--------G~~ 749 (968)
.++ +.|+...+..+..++... |++++|..+|++..+. .|+ ...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998 679988888999999999 9999999999988654 565 77888899999998 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 750 SRAREFTEQM-PIEP----DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 750 ~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
++|.+.+++. .+.| +...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 5566 5889999999999999999999999999999999999999999999999999999864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=3.2e-10 Score=119.17 Aligned_cols=223 Identities=10% Similarity=-0.039 Sum_probs=119.4
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHH
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAAN----LANIKQGKQVHAMIIKTGYDSETEASNSL 637 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 637 (968)
.++..+...|...|++++|++.|++..+.+ +...+..+-..+.. .++.++|...+..+.+.+ +...+..|
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 344455555555566666666665555421 12233333333444 445555555555544443 44445555
Q ss_pred hhHHHh----cCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHc
Q 040643 638 ITLYAK----CGSIDDAKREFLEMP-EKNEVSWNAMITGFSQ----HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACS 708 (968)
Q Consensus 638 i~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~ 708 (968)
..+|.. .|++++|.+.|++.. ..+..+|..+...|.. .|+.++|++.|++..+.+ +...+..+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 555655 666666666666544 2355566666666666 666666666666666644 3344445555555
Q ss_pred c----cCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh--
Q 040643 709 H----VGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGR----AGCLSRAREFTEQM-PIEPDAMVWRTLLSACRV-- 777 (968)
Q Consensus 709 ~----~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~-- 777 (968)
. .+++++|..+|+...+. .+...+..+..+|.+ .|++++|.+.+++. ...| ...+..|...+..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCC
Confidence 4 66666666666655432 123445555555555 56666666665554 1222 4444444444554
Q ss_pred --cCChhHHHHHHHHHHccCCCC
Q 040643 778 --HKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 778 --~g~~~~a~~~~~~~~~l~p~~ 798 (968)
.+|.+.|....+++++++|++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHH
Confidence 556666666666666665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.1e-10 Score=114.41 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++.+.|++++|...+...... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 456777888888888888888888888887 67764 46777777888888888888888877543 344 556666
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcc
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 816 (968)
+...+...+++++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|+++.+|..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 777888888888888887776 44554 6778788888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 040643 817 CRDQIRQIMKD 827 (968)
Q Consensus 817 ~a~~~~~~m~~ 827 (968)
+|.+..+..-+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99887665433
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-10 Score=125.19 Aligned_cols=358 Identities=9% Similarity=0.019 Sum_probs=179.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHH
Q 040643 387 MLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAM 466 (968)
Q Consensus 387 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 466 (968)
+...+.+.|++++|+++|++..+.|.. + .+..+-..+...|+. .+.++|...|++....+...+..+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~-~--A~~~Lg~~y~~~g~~----------~d~~~A~~~~~~A~~~~~~A~~~L 75 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS-E--AQVGLADIQVGTRDP----------AQIKQAEATYRAAADTSPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-T--GGGTCC--------------------------------------CHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHccCCC----------CCHHHHHHHHHHHHhCCHHHHHHH
Confidence 344556667777777777777666522 1 121121112222211 112455555555444455666666
Q ss_pred HHHHHhcC-----ChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHH
Q 040643 467 IVGFVQHG-----MFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYA 541 (968)
Q Consensus 467 i~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 541 (968)
...+...+ ++++|+.+|++..+.|... .+..+-..+...+..+.....+..+.+.....++.....|..+|.
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYR 152 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66555544 6678888888877755322 333333334333333322222222222211123344445555555
Q ss_pred HcC----CHHHHHHHHHhCCCCCcccHHHHHHHHHhcC---ChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHH
Q 040643 542 RCG----RIQEAYLVFNKIDAKDNISWNGLISGFAQSG---YCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQ 614 (968)
Q Consensus 542 k~g----~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 614 (968)
..+ ..+.+..++......+..++..|...|.+.| +.++|++.|++..
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-------------------------- 206 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV-------------------------- 206 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH--------------------------
Confidence 555 3333444444444444445555555555555 4455555554444
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHhhHHHhc----CCHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHH
Q 040643 615 GKQVHAMIIKTGYDSETEASNSLITLYAKC----GSIDDAKREFLEMPEKNEVSWNAMITG-F--SQHGYALEAINLFEK 687 (968)
Q Consensus 615 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~----g~~~~A~~~f~~~~~~d~~~~~~li~~-~--~~~g~~~~A~~l~~~ 687 (968)
+.| +++...+..|..+|... ++.++|.+.|++....++..+..+... | ...|+.++|++.|++
T Consensus 207 ---------~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 207 ---------SRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp ---------HTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred ---------HCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 433 22333334444555443 577777777776653355666666665 3 456778888888888
Q ss_pred HHHCCCCCChHHHHHHHHHHcccC-----cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHh
Q 040643 688 MKKHDVMPNHVTFVGVLSACSHVG-----LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGR----AGCLSRAREFTEQ 758 (968)
Q Consensus 688 m~~~g~~Pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~G~~~eA~~~~~~ 758 (968)
..+.| +......|...|. .| ++++|.++|+... .-+...+..|..+|.. ..++++|.+.+++
T Consensus 277 Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 277 GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 77765 4445555555554 44 7888888887653 2235556666666655 3378888888877
Q ss_pred C--CCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 759 M--PIEPDAMVWRTLLSACR----VHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 759 m--~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
. +-.|++. ..|...+. ..+|.+.|...++++.+..+.+ .-..+..+.
T Consensus 348 Aa~~g~~~A~--~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~ 400 (452)
T 3e4b_A 348 AARNGQNSAD--FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLE 400 (452)
T ss_dssp HHTTTCTTHH--HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHH
T ss_pred HHhhChHHHH--HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHH
Confidence 6 2233332 23333333 2457888888888887776533 334444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-10 Score=117.56 Aligned_cols=190 Identities=13% Similarity=0.021 Sum_probs=89.1
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHH
Q 040643 528 DDLSIGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVS 604 (968)
Q Consensus 528 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 604 (968)
++...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..|++..+. .|+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~-------- 72 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRY-------- 72 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc--------
Confidence 3444555555555555666555555554332 23444555555555555555555555555443 2322
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhc-----------CCHHHHHHHHhcCC--CC-CHHHHHHHHH
Q 040643 605 AAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKC-----------GSIDDAKREFLEMP--EK-NEVSWNAMIT 670 (968)
Q Consensus 605 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~-----------g~~~~A~~~f~~~~--~~-d~~~~~~li~ 670 (968)
...+..+...|.+. |++++|...|++.. .| +...|..+..
T Consensus 73 --------------------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 73 --------------------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 22333333333333 55555555555443 22 3445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL 749 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~ 749 (968)
.|...|++++|+..|++.++.. .+...+..+..++...|++++|+..|+...+. .|+ ...+..+..++.+.|++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC----
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCH
Confidence 5555555555555555555533 34445555555555555555555555555432 333 44455555555555555
Q ss_pred HHHHHHHHh
Q 040643 750 SRAREFTEQ 758 (968)
Q Consensus 750 ~eA~~~~~~ 758 (968)
++|.+.+++
T Consensus 202 ~~A~~~~~~ 210 (217)
T 2pl2_A 202 EEAARAAAL 210 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.6e-10 Score=115.85 Aligned_cols=221 Identities=10% Similarity=-0.023 Sum_probs=187.8
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHh----cCCHHHHHHHHhcCC-CCCHHHHHHHHHH
Q 040643 597 YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAK----CGSIDDAKREFLEMP-EKNEVSWNAMITG 671 (968)
Q Consensus 597 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~ 671 (968)
.++..+-..+...|+.++|...+..+.+ +.+...+..+..+|.. .|++++|.+.|++.. ..+..+|..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455666677888999999999999988 3456778889999999 999999999999876 3478899999999
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcc----cCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHH
Q 040643 672 FSQ----HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH----VGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLL 743 (968)
Q Consensus 672 ~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l 743 (968)
|.. .|+.++|++.|++..+.+ +...+..+...+.. .|++++|.++|+...+. + +...+..+..+|
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLY 156 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHH
Confidence 999 999999999999999865 66788888888888 99999999999988653 3 456677888888
Q ss_pred hh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh----
Q 040643 744 GR----AGCLSRAREFTEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA---- 811 (968)
Q Consensus 744 ~r----~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 811 (968)
.+ .|++++|.+.+++.--..+...+..|...+.. .++.+.|....+++++++| +..+..|+.+|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 88 99999999999987222456777778888888 8999999999999999977 7789999999999
Q ss_pred cCCcchHHHHHHHHHhCC
Q 040643 812 AGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~~g 829 (968)
.|++++|.+..+...+.|
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 999999999877766655
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-11 Score=123.12 Aligned_cols=215 Identities=12% Similarity=0.022 Sum_probs=178.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCC---CChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYD---SETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEA 681 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A 681 (968)
..+++++|...+..+++.... .+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 458899999999999885321 246778889999999999999999999876 44788999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-
Q 040643 682 INLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM- 759 (968)
Q Consensus 682 ~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 759 (968)
++.|+++++ ..|+ ..++..+...+...|++++|..+|+.+.+. .|+...+......+.+.|++++|...+++.
T Consensus 97 ~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999 5675 668899999999999999999999998654 576555556666778889999999999765
Q ss_pred C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 760 P-IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE----DSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 760 ~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
. ..++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|....+...+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 233444444 666777888889999999999998874 3788999999999999999999987776553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=9.1e-11 Score=139.14 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++...|++++|+..|++..+ +.|+ .+.|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888888888888888888888888 7787 45788888888888999999888887754 3676 677888
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcc
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 816 (968)
+..+|.+.|++++|.+.+++. .+.|+ ...|..|...+...|+++.|+..++++++++|+++..|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 889999999999999888876 56776 7889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 040643 817 CRDQIRQIM 825 (968)
Q Consensus 817 ~a~~~~~~m 825 (968)
+|.+..+..
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998865544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.5e-11 Score=131.02 Aligned_cols=193 Identities=15% Similarity=0.068 Sum_probs=115.5
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMPE-----KN----EVSWNAMITGFSQHGY--------------------ALEAIN 683 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~~ 683 (968)
++..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444555556666666666665554431 11 2356666666666666 666666
Q ss_pred HHHHHHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHH
Q 040643 684 LFEKMKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRARE 754 (968)
Q Consensus 684 l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~ 754 (968)
.|++..+. +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...|..++.++.+.|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66665431 11222 234566666677777777777777665443221222 2356666777777777777777
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchHHHHHHHHhhcCCcchHHH
Q 040643 755 FTEQM----PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 755 ~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
.+++. +-.++ ..+|..+...+...|+++.|...+++++++.|.. +..+..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 76654 11112 4456666666777777777777777777765443 4567777888888888888877
Q ss_pred HHHHH
Q 040643 821 IRQIM 825 (968)
Q Consensus 821 ~~~~m 825 (968)
..+..
T Consensus 329 ~~~~a 333 (406)
T 3sf4_A 329 FAEKH 333 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.7e-11 Score=135.45 Aligned_cols=171 Identities=11% Similarity=0.044 Sum_probs=118.7
Q ss_pred HHHHHHHHhcCC-------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----hHHHHHHHHHHcccCc
Q 040643 647 IDDAKREFLEMP-------EK--NEVSWNAMITGFSQHGYALEAINLFEKMKKHD-VMPN----HVTFVGVLSACSHVGL 712 (968)
Q Consensus 647 ~~~A~~~f~~~~-------~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd----~~t~~~ll~a~~~~g~ 712 (968)
+++|.+.|++.. .+ ...+|+.+...|...|++++|++.|++..+.. -.++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 666655555432 11 23467777788888888888888888876521 0112 2267777778888888
Q ss_pred HHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC
Q 040643 713 VNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRVHKN 780 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~ 780 (968)
+++|..+|+...+...-.++ ...+..++.+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 88888888876543211111 456777888888889988888888775 11222 5677777788889999
Q ss_pred hhHHHHHHHHHHccCC------CCcchHHHHHHHHhhcCCcch
Q 040643 781 MEIGEYAANHLLELEP------EDSATYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~~~g~~~~ 817 (968)
.+.|...+++++++.+ .....+..|+.+|...|+...
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999999999988843 345678889999999987643
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.5e-11 Score=134.19 Aligned_cols=195 Identities=11% Similarity=-0.014 Sum_probs=128.7
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPE---------KNEVSWNAMITGFSQHGY-----------------ALEAINLF 685 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~---------~d~~~~~~li~~~~~~g~-----------------~~~A~~l~ 685 (968)
.++..+...|...|++++|.+.|++..+ ....+|..+...|...|+ +++|++.|
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4455566666666776666666665431 123466667777777777 77777777
Q ss_pred HHHHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHH
Q 040643 686 EKMKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFT 756 (968)
Q Consensus 686 ~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~ 756 (968)
++..+. +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...|..+..+|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 766541 11222 235666677777788888888877766443211111 225677778888888888888777
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchHHHHHHHHhhcCCcchHHHHH
Q 040643 757 EQM----PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 757 ~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
++. +-.++ ..+|..+...+...|+.+.|...+++++++.|+. ...+..++.+|...|++++|.+..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 765 11111 5566777777888888888888888888875543 347888999999999999998876
Q ss_pred HHHH
Q 040643 823 QIMK 826 (968)
Q Consensus 823 ~~m~ 826 (968)
+...
T Consensus 367 ~~al 370 (411)
T 4a1s_A 367 EQHL 370 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-10 Score=125.91 Aligned_cols=257 Identities=16% Similarity=0.115 Sum_probs=162.4
Q ss_pred HHHHhcCChhhHHHHHHHhhhcCCcCCc-----chHHHHHHHHhhhhhHHHHHHHHHHHHHh----CCCC-ChhHHhHHh
Q 040643 569 SGFAQSGYCEGALQVFSQMTQVGVQANL-----YTFGSVVSAAANLANIKQGKQVHAMIIKT----GYDS-ETEASNSLI 638 (968)
Q Consensus 569 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li 638 (968)
..+...|++++|+..|++..+. .|+. ..+..+...+...|+++.|...+..+.+. +..+ ...++..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3344444555555555444443 1221 23333344444445555555544443321 1111 234556666
Q ss_pred hHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMPE-----KN----EVSWNAMITGFSQHGY--------------------ALEAINLFEKMK 689 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~ 689 (968)
..|...|++++|.+.|++..+ ++ ..+|..+...|...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777766431 22 3367777777777787 888888877765
Q ss_pred HC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-
Q 040643 690 KH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM- 759 (968)
Q Consensus 690 ~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m- 759 (968)
+. +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...+..++.++.+.|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11222 235667777788888888888888876543211122 336777888888899999888888765
Q ss_pred ---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 760 ---PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 760 ---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+-.++ ..++..+...+...|+.+.|....++++++.|.. ...+..++.+|...|++++|.+..+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11222 5566777777889999999999999998886643 3478899999999999999999776654
Q ss_pred h
Q 040643 827 D 827 (968)
Q Consensus 827 ~ 827 (968)
+
T Consensus 331 ~ 331 (338)
T 3ro2_A 331 E 331 (338)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.18 E-value=2e-10 Score=112.54 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=143.3
Q ss_pred CChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 040643 629 SETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVL 704 (968)
Q Consensus 629 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll 704 (968)
-+..+|..|...|.+.|++++|.+.|++.. +.++.+|..+...|...|++++|+..+++... ..|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 356788899999999999999999999876 34778999999999999999999999999988 5676 45677777
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNM 781 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 781 (968)
..+...++++++...+....+. .|+ ...+..+..+|.+.|++++|.+.+++. .+.|+ ..+|..+...+...|+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8889999999999999987653 455 677888999999999999999999887 55665 78899999999999999
Q ss_pred hHHHHHHHHHHccCCCCc
Q 040643 782 EIGEYAANHLLELEPEDS 799 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p~~~ 799 (968)
+.|...++++++++|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999999764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-08 Score=114.04 Aligned_cols=217 Identities=10% Similarity=-0.009 Sum_probs=159.2
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHH-HHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC
Q 040643 580 ALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGK-QVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP 658 (968)
Q Consensus 580 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 658 (968)
+..+|++....- .-+...|.....-+...|+.+.|. .+++.++.. .+.+..++-.++..+-+.|+++.|.++|+++.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445666665531 223344445555556667777886 888888864 35567778888888899999999999998765
Q ss_pred C-------------C------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHcc-cC
Q 040643 659 E-------------K------------NEVSWNAMITGFSQHGYALEAINLFEKMKKH-DVMPNHVTFVGVLSACSH-VG 711 (968)
Q Consensus 659 ~-------------~------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~t~~~ll~a~~~-~g 711 (968)
. | ....|...+....+.|..+.|..+|++.++. + .+....|......-.+ .+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 2 3 1236888888888899999999999999985 2 1123333322222223 45
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP----DAMVWRTLLSACRVHKNMEIGEY 786 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~ 786 (968)
+.+.|.++|+...+.+.-. ...+...++.+...|+.+.|..++++. ...| ...+|..++.--..+|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~p~~--~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATD--GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6999999999988774332 444568889899999999999999986 3233 36899999999999999999999
Q ss_pred HHHHHHccCCCCcch
Q 040643 787 AANHLLELEPEDSAT 801 (968)
Q Consensus 787 ~~~~~~~l~p~~~~~ 801 (968)
+.+++.+..|+++..
T Consensus 563 v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 563 LEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHSTTCCHH
T ss_pred HHHHHHHhCCCCcHH
Confidence 999999999987644
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-09 Score=114.95 Aligned_cols=216 Identities=10% Similarity=0.055 Sum_probs=154.7
Q ss_pred hhHHHHHHHhhhcCCcCCc-chHHHHHHHHh-------hhhhH-------HHHHHHHHHHHHhCCCCChhHHhHHhhHHH
Q 040643 578 EGALQVFSQMTQVGVQANL-YTFGSVVSAAA-------NLANI-------KQGKQVHAMIIKTGYDSETEASNSLITLYA 642 (968)
Q Consensus 578 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 642 (968)
++|+..|++.... .|+. ..|..+...+. ..|+. ++|..+++.+++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566666666553 3333 23333333332 23553 777777777776322345667888888888
Q ss_pred hcCCHHHHHHHHhcCC--CC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHc-ccCcHHHH
Q 040643 643 KCGSIDDAKREFLEMP--EK-NEV-SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACS-HVGLVNEG 716 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~--~~-d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~-~~g~~~~a 716 (968)
+.|++++|.++|+++. .| +.. .|..++..+.+.|+.++|.++|++.++ ..|+ ...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999988765 33 343 788888888889999999999999888 4454 334544433322 36899999
Q ss_pred HHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 717 LRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PIEP--DAMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
..+|+...+. .|+ ...|..+++.+.+.|++++|..++++. ++.| ...+|..++.....+|+.+.|..+.+
T Consensus 189 ~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999887664 343 677888888888999999999988886 2455 37788888888888999999999999
Q ss_pred HHHccCCCCcc
Q 040643 790 HLLELEPEDSA 800 (968)
Q Consensus 790 ~~~~l~p~~~~ 800 (968)
+++++.|+++.
T Consensus 266 ~a~~~~p~~~~ 276 (308)
T 2ond_A 266 RRFTAFREEYE 276 (308)
T ss_dssp HHHHHTTTTTS
T ss_pred HHHHHcccccc
Confidence 99999997653
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-08 Score=117.25 Aligned_cols=141 Identities=10% Similarity=-0.018 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC--C-CcccHHHHHHHHHcCCC---hhHHHHHHHHhhcc
Q 040643 236 FHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ--R-DGVTYNSLISGLAQCGY---SDKALELFEKMQLD 309 (968)
Q Consensus 236 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~ 309 (968)
.+...+... +.|...|..++..+.+.+.++.++.+|+++.. | ....|..-+..-.+.|. .+.+..+|++-...
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 344444444 46888999999999999999999999998864 3 45578888888888888 99999999998876
Q ss_pred c-cCCCcccHHHHHHHHhccCCh--------HHHHHHHHHHHHh-CC-CCC-hhhHhHHHHHHHh---------cCChhH
Q 040643 310 C-LKPDCVTVASLVSACASVGAF--------RTGEQLHSYAIKV-GI-SKD-IIVEGSMLDLYVK---------CSDVET 368 (968)
Q Consensus 310 g-~~p~~~t~~~ll~a~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~Li~~y~~---------~g~~~~ 368 (968)
. ..|+...|..-+.-..+.++. +...++|+.++.. |. .++ ..+|...+..... .++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 4 246766666666655444432 3455777776653 66 554 4677777766543 334667
Q ss_pred HHHHHhhCC
Q 040643 369 AYKFFLTTE 377 (968)
Q Consensus 369 A~~~f~~~~ 377 (968)
++++|++..
T Consensus 213 ~R~iy~raL 221 (679)
T 4e6h_A 213 IRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 777777655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=130.66 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=164.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC--C-Cc----ccHHHHHHHHHhcCChhhHHHHHHHhhhc----CCcC-CcchHHHHH
Q 040643 536 LISLYARCGRIQEAYLVFNKIDA--K-DN----ISWNGLISGFAQSGYCEGALQVFSQMTQV----GVQA-NLYTFGSVV 603 (968)
Q Consensus 536 Li~~y~k~g~~~~A~~~f~~m~~--~-d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll 603 (968)
+...|...|++++|...|++... + +. ..|..+...|...|++++|+..|++.... +-.| ...++..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 44445555556655555554331 1 21 24555555556666666666655554432 1111 123344444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh----CC-CCChhHHhHHhhHHHhcCC-----------------HHHHHHHHhcCCC--
Q 040643 604 SAAANLANIKQGKQVHAMIIKT----GY-DSETEASNSLITLYAKCGS-----------------IDDAKREFLEMPE-- 659 (968)
Q Consensus 604 ~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~k~g~-----------------~~~A~~~f~~~~~-- 659 (968)
..+...|++++|...+..+++. +- +....++..+...|...|+ +++|.+.|++..+
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555566666666665554432 11 1123455666677777777 7777776665431
Q ss_pred -----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---C----hHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 660 -----K--NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP---N----HVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 660 -----~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---d----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
+ ...+|..+...|...|++++|++.|++..+ +.| + ..++..+...+...|++++|..+|+....
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 234777888888888999999998888876 222 2 12677788888899999999999887654
Q ss_pred hcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 040643 726 EYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM-PI---EPD----AMVWRTLLSACRVHKNMEIGEYAANHLLE 793 (968)
Q Consensus 726 ~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 793 (968)
...-..+ ...+..+..++.+.|++++|.+.+++. .+ .++ ..++..+...+...|+.+.|...++++++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3221111 456778888999999999999888876 11 122 45677777888999999999999999998
Q ss_pred cCC
Q 040643 794 LEP 796 (968)
Q Consensus 794 l~p 796 (968)
+.+
T Consensus 372 ~~~ 374 (411)
T 4a1s_A 372 LAX 374 (411)
T ss_dssp HCC
T ss_pred HHh
Confidence 876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-09 Score=111.37 Aligned_cols=204 Identities=9% Similarity=0.063 Sum_probs=128.1
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--C-CCHHHHHHHHHHH
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--E-KNEVSWNAMITGF 672 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~-~d~~~~~~li~~~ 672 (968)
...+...-..+...|++++|...+..+++..-+++...+..+...|.+.|++++|.+.|++.. . .+...|..+...|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 345555555666777777777777777765533555555556777777777777777777654 2 2455677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh--------HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHH
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPNH--------VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK---PEHYACVVD 741 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~ 741 (968)
...|++++|++.|++.++ +.|+. ..+..+...+...|++++|.++|+... .+.|+ ...|..+..
T Consensus 87 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHHH
Confidence 777777777777777776 45543 235555566666777777777777654 33454 445555666
Q ss_pred HHhhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 742 LLGRAGCL--SRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 742 ~l~r~G~~--~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
+|...|+. ++|..+. ..+...+..+. ....++++.|....+++++++|++......|+.+...
T Consensus 162 ~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 162 LFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 66555443 2222221 11122222222 2344556999999999999999999999888887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-10 Score=120.34 Aligned_cols=276 Identities=9% Similarity=0.028 Sum_probs=140.2
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHH
Q 040643 462 SWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYA 541 (968)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 541 (968)
.+......+...|++++|+..|++..+. .|+.... -..++..+...|.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~------------------------------~~~~~~~l~~~~~ 54 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKT------------------------------LSAIYSQLGNAYF 54 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHH------------------------------HHHHHHHHHHHHH
Confidence 3445567788899999999999998875 3332110 0122344555566
Q ss_pred HcCCHHHHHHHHHhCCC---------CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc-CC----cchHHHHHHHHh
Q 040643 542 RCGRIQEAYLVFNKIDA---------KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ-AN----LYTFGSVVSAAA 607 (968)
Q Consensus 542 k~g~~~~A~~~f~~m~~---------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~ 607 (968)
..|++++|...|++... ....+|..+...|...|++++|+..|.+..+.... ++ ..++..+...+.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 66666666666554321 02335666777777777777777777776542111 11 124444444555
Q ss_pred hhhh--------------------HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC--CHHHH
Q 040643 608 NLAN--------------------IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK--NEVSW 665 (968)
Q Consensus 608 ~~~~--------------------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--d~~~~ 665 (968)
..|+ +++|...+....+. +.....+ ...+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~ 186 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAF 186 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHH
Confidence 5555 55555554443321 0000000 11234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchH
Q 040643 666 NAMITGFSQHGYALEAINLFEKMKKHDV-MPN----HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHY 736 (968)
Q Consensus 666 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y 736 (968)
..+...|...|++++|++.|++..+..- .++ ..++..+...+...|++++|..+|+...+...-.++ ...+
T Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (338)
T 3ro2_A 187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 266 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 4444444444555555555444443100 001 113444444555555555555555544322111111 3345
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 737 ACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 737 ~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
..+..++.+.|++++|.+.+++. +-.++ ..+|..+...+...|+.+.|...+++++++.++
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 267 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 55556666666666666555544 11111 445666666777778888888888887777654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-09 Score=113.86 Aligned_cols=210 Identities=8% Similarity=-0.035 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHhCCCCChhHHhHHhhHHH-------hcCCH-------HHHHHHHhcCC---CC-CHHHHHHHHHHHHh
Q 040643 613 KQGKQVHAMIIKTGYDSETEASNSLITLYA-------KCGSI-------DDAKREFLEMP---EK-NEVSWNAMITGFSQ 674 (968)
Q Consensus 613 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-------k~g~~-------~~A~~~f~~~~---~~-d~~~~~~li~~~~~ 674 (968)
+++..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++.. .| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777787777753 556778888887775 35886 99999999754 23 66799999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHh-hcCChH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLG-RAGCLS 750 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~-r~G~~~ 750 (968)
.|+.++|.++|++.++ +.|+.. .|..+...+...|.+++|..+|++..+ ..|. ...|...+.+.. ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 788643 788899999999999999999998864 3444 444444443322 379999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc---CCC-CcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 751 RAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL---EPE-DSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 751 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+|.+++++. ...| +...|..++..+...|+.+.|..+++++++. .|+ +...|..+++.+...|++++|..+.+.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 3334 4889999999999999999999999999996 554 667888999999999999999998777
Q ss_pred HHhC
Q 040643 825 MKDR 828 (968)
Q Consensus 825 m~~~ 828 (968)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=124.45 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=77.4
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCC----------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPE----------K-NEVSWNAMITGFSQHGYALEAINLFEKMKKH------DVM 694 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 694 (968)
.++..+...|...|++++|.+.|+++.+ + ...+|..+...|...|++++|++.|+++.+. +-.
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444555555555555555555554331 1 2334556666666666666666666666552 113
Q ss_pred CCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhc------CCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHH
Q 040643 695 PNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEY------GLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMV 767 (968)
Q Consensus 695 Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~ 767 (968)
|+. .++..+...+...|++++|.++|+.+.+.. ...|........ ...
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------------------~~~ 246 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH-------------------------AEE 246 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------------HHH
Confidence 332 245555556666666666666666554320 011111110000 111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+..+.......+.++.+....+++.+..|.++..+..|+.+|...|++++|.+..+..
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222222333445555555666666666666666777777777777777776654433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=124.42 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=104.4
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
..+|..+...|...|++++|+.+|+++.+..-. ......+....++..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK----------------------------TSGHDHPDVATMLNILALV 78 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------HHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------------------HcCCCCHHHHHHHHHHHHH
Confidence 346777788888888888888888776642000 0000011123344555566
Q ss_pred HHhcCCHHHHHHHHhcCCC----------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-hHHHHH
Q 040643 641 YAKCGSIDDAKREFLEMPE----------K-NEVSWNAMITGFSQHGYALEAINLFEKMKKH------DVMPN-HVTFVG 702 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~~----------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~Pd-~~t~~~ 702 (968)
|...|++++|.+.|++... + ...+|..+...|...|++++|++.|+++.+. +-.|+ ...+..
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 6666666666666655431 1 3456777888888888888888888887763 22343 335667
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcC-----CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYG-----LVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~-----i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
+...+...|++++|.++|+.+.+... -.|. ...+..++.+|.+.|++++|.+.++++
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77778888888888888877654311 1222 344556666666666666666666553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.7e-09 Score=104.06 Aligned_cols=157 Identities=11% Similarity=-0.023 Sum_probs=92.8
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHccc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHV 710 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 710 (968)
+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+ ..|+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~-------------- 74 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPD-------------- 74 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT--------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC--------------
Confidence 34444455555555555555555441 2344455555555555555555555555544 2332
Q ss_pred CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHH
Q 040643 711 GLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIE-PDAMVWRTLLSACRVHKNMEIGEYAA 788 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~ 788 (968)
+...+..++.++.+.|++++|.+.++++ ... .+..+|..+...+...|+.+.|...+
T Consensus 75 ---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 75 ---------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 2334444555555555555555555544 122 23566666666777777777788888
Q ss_pred HHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 789 NHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 789 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+++++..|+++..+..++.+|...|++++|.+..+...+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888776655543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-09 Score=116.95 Aligned_cols=225 Identities=9% Similarity=0.017 Sum_probs=120.4
Q ss_pred HHHhcCChhhHHHHHHHhhhcC-CcCC----cchHHHHHHHHhhhhhHHHHHHHHHHHHHh--CCC----CChhHHhHHh
Q 040643 570 GFAQSGYCEGALQVFSQMTQVG-VQAN----LYTFGSVVSAAANLANIKQGKQVHAMIIKT--GYD----SETEASNSLI 638 (968)
Q Consensus 570 ~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~----~~~~~~~~li 638 (968)
.+...|++++|+..|++....- -.|| ..++..+-..+...|+.+.|...+..+++. ... ....+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3444455555555555443320 0111 123344444445555555555555444431 110 0123456666
Q ss_pred hHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMPE-----KN----EVSWNAMITGFSQHGYALEAINLFEKMKKH----DVMPN-HVTFVGVL 704 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd-~~t~~~ll 704 (968)
..|...|++++|.+.|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +..|+ ..++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 777777777777777766541 11 236777777888888888888888777652 22244 34677777
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPK---PEHYACVVDLLGRAGC---LSRAREFTEQMPIEPD-AMVWRTLLSACRV 777 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r~G~---~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~ 777 (968)
..+...|++++|..+|+...+...-.++ ...+..+..++...|+ +++|.+++++.+..|+ ..++..|...+..
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 7777888888888877765432111111 2234556666666666 6666666666543333 2233333334444
Q ss_pred cCChhHHHHHHHHHHcc
Q 040643 778 HKNMEIGEYAANHLLEL 794 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l 794 (968)
.|+.+.|....++++++
T Consensus 352 ~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQV 368 (383)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-09 Score=123.99 Aligned_cols=176 Identities=9% Similarity=-0.025 Sum_probs=154.4
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHH
Q 040643 647 IDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA-LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFE 721 (968)
Q Consensus 647 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 721 (968)
+++|.+.++... ..+...|..+...|...|++ ++|++.|++.++ ..|+ ...+..+..++...|++++|.++|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666543 34788999999999999999 999999999999 6786 5689999999999999999999999
Q ss_pred HhhhhcCCCCCcchHHHHHHHHhhc---------CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--------CChh
Q 040643 722 SMSTEYGLVPKPEHYACVVDLLGRA---------GCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH--------KNME 782 (968)
Q Consensus 722 ~m~~~~~i~p~~~~y~~lv~~l~r~---------G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~--------g~~~ 782 (968)
... .+.|+...+..+..+|.+. |++++|.+.+++. ...|+ ...|..|..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 885 4578888899999999999 9999999999987 55665 88899998888888 9999
Q ss_pred HHHHHHHHHHccCC---CCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 783 IGEYAANHLLELEP---EDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 783 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.|...++++++++| +++..|..++.+|...|++++|.+..+...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999997666544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-09 Score=108.20 Aligned_cols=186 Identities=13% Similarity=0.025 Sum_probs=97.4
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---E-KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVL 704 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll 704 (968)
|+..+..+...|.+.|++++|.+.|++.. + ++...|..+...|...|++++|++.|++.++ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34455555556666666666666666543 2 4555555566666666666666666666665 45543 3455555
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCC-c-------chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHH
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPK-P-------EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD---AMVWRTLL 772 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~-------~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~---~~~~~~ll 772 (968)
.++...|++++|...|+...+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666666666666655433 333 2 33455555555555555555555554 34444 23333333
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..+. ..+....+++..+.+.+...|. .......|.+++|....+...+
T Consensus 161 ~~~~-----~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFY-----NNGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 3332 2334444555555554433332 2233344455788776555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.00 E-value=6.5e-09 Score=101.28 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=127.0
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 040643 597 YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFS 673 (968)
Q Consensus 597 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~ 673 (968)
..+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566677888999999999998877643 3467788999999999999999999999875 447788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 040643 674 QHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA 752 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA 752 (968)
..|++++|++.|+++.+ ..|+ ...+..+..++...|++++|..+|+.+.+. .|
T Consensus 88 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~--------------------- 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP--------------------- 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---------------------
T ss_pred HhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc---------------------
Confidence 99999999999999988 4554 456667777777777777777777766433 12
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 753 REFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 753 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.+..+|..+...+...|+.+.|....++++++.|+++..
T Consensus 142 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 142 ----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred ----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 124455556666666677777777777777777766543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-09 Score=117.72 Aligned_cols=222 Identities=9% Similarity=0.003 Sum_probs=167.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHh--CCCC---ChhHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCC-----HHHHHH
Q 040643 603 VSAAANLANIKQGKQVHAMIIKT--GYDS---ETEASNSLITLYAKCGSIDDAKREFLEMP-----EKN-----EVSWNA 667 (968)
Q Consensus 603 l~a~~~~~~~~~a~~~~~~~~~~--g~~~---~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~d-----~~~~~~ 667 (968)
-..+...|++++|...+..+.+. ..+. ...++..+...|...|++++|.+.|++.. .++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34567789999999999998773 1122 24678889999999999999998888754 122 357889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhc---CCCCC-cchHHH
Q 040643 668 MITGFSQHGYALEAINLFEKMKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEY---GLVPK-PEHYAC 738 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p~-~~~y~~ 738 (968)
+...|...|++++|++.|++.++. +-.|. ..++..+...+...|++++|.++|+...+.. +..|. ...+..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999999999999999999998862 11111 2378889999999999999999999875521 22243 667888
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PI-----EPD-AMVWRTLLSACRVHKN---MEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
+..++.+.|++++|.+.+++. .+ .|. ...+..|...+...|+ .+.|...+++. ...|.....+..|+.+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 999999999999999999886 11 232 2234555555777788 66777777666 4445566788899999
Q ss_pred HhhcCCcchHHHHHHHH
Q 040643 809 YAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 809 y~~~g~~~~a~~~~~~m 825 (968)
|...|++++|.+..+..
T Consensus 349 y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999999999975554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.96 E-value=7.8e-08 Score=105.99 Aligned_cols=192 Identities=13% Similarity=0.003 Sum_probs=120.0
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC-------C---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C-C-hH
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMP-------E---K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVM--P-N-HV 698 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~-------~---~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--P-d-~~ 698 (968)
...+...|...|++++|.+.|++.. . | ....+..+...|...|++++|...+++..+..-. | + ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 3445566666777777766666543 1 1 1235556667777778888888888777652211 1 1 23
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHH-----HHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYA-----CVVDLLGRAGCLSRAREFTEQM-PIEPD-----AMV 767 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~-----~lv~~l~r~G~~~eA~~~~~~m-~~~p~-----~~~ 767 (968)
++..+...+...|++++|..+++.......-......+. ..+.++.+.|++++|.+.+++. ...|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 456666677778888888888877654321111111111 2334466788888888888776 22221 334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCc------chHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPEDS------ATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+..+...+...|+.+.|...++++++..+... ..+..++.+|...|++++|....+..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55666677778888888888888877654321 36777888999999999998865544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.5e-09 Score=126.74 Aligned_cols=163 Identities=12% Similarity=0.195 Sum_probs=143.3
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
+...++.|...|.+.|++++|.+.|++.. .| +..+|+.+...|.+.|++++|++.|++.++ +.|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 46678889999999999999999999876 34 678999999999999999999999999998 7887 458999999
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNME 782 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 782 (968)
++...|++++|++.|++..+ +.|+ .+.|..+..+|.+.|++++|++.+++. .+.|+ ...|..|...+...|+.+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998764 4676 778999999999999999999999987 67776 788999999999999999
Q ss_pred HHHHHHHHHHccCCC
Q 040643 783 IGEYAANHLLELEPE 797 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~ 797 (968)
.|+...++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999988664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.6e-09 Score=101.95 Aligned_cols=134 Identities=10% Similarity=0.039 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAR 753 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~ 753 (968)
|+.++|++.+++... ..|+ ...+..+...|...|++++|.++|++..+ +.|+ ...|..+..+|.+.|++++|.
T Consensus 11 ~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 11 ADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 344444444444433 2332 22334444444444444444444444432 1333 444555555555555555555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH-HHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 754 EFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGE-YAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 754 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
..+++. .+.|+ ..+|..+...+...|+.+.|. ...+++++++|+++..|.+.+.++...|+
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 555554 34554 667777777888888876544 45699999999999999999999988885
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-08 Score=100.51 Aligned_cols=202 Identities=11% Similarity=0.051 Sum_probs=123.0
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP--EK-N---EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN----HVTF 700 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~ 700 (968)
...+-.+...+.+.|++++|...|+++. .| + ...|..+...|...|++++|+..|++.++ ..|+ ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHHH
Confidence 3444455555666666666666666554 22 2 44555666666666666666666666665 3342 1234
Q ss_pred HHHHHHHcc--------cCcHHHHHHHHHHhhhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 040643 701 VGVLSACSH--------VGLVNEGLRYFESMSTEYGLVPKP-EHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTL 771 (968)
Q Consensus 701 ~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~i~p~~-~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~l 771 (968)
..+..++.. .|++++|...|+...+.+ |+. .....+..+....+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 444445555 666666666666554432 321 1111111110000000 1113456
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCc---chHHHHHHHHhhc----------CCcchHHHHHHHHHhCCCccCCcccE
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEPEDS---ATYVLLSNIYAAA----------GKWDCRDQIRQIMKDRGVKKEPGQSW 838 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~k~~g~s~ 838 (968)
...+...|+++.|...++++++..|+++ ..+..++.+|... |++++|....+...+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~---------- 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI---------- 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH----------
Confidence 6678899999999999999999999854 5889999999977 8999999987766542
Q ss_pred EEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHc
Q 040643 839 IEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEI 875 (968)
Q Consensus 839 i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 875 (968)
+..+|...+....+.++..++.+.
T Consensus 225 -------------~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 225 -------------FPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------CTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCChHHHHHHHHHHHHHHHHHHh
Confidence 123577777888888887777653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1e-08 Score=107.70 Aligned_cols=219 Identities=12% Similarity=0.124 Sum_probs=152.5
Q ss_pred hhhhHHHHHHHHHHHHHh-------CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC----------C-CHHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKT-------GYDSETEASNSLITLYAKCGSIDDAKREFLEMPE----------K-NEVSWNAMI 669 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~-d~~~~~~li 669 (968)
..|++++|...+..+++. ..+....++..+...|...|++++|...|+++.+ | ...+|+.+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666555442 2223466788899999999999999999987641 2 345788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhc-----CCCCC-cchH
Q 040643 670 TGFSQHGYALEAINLFEKMKKH------DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEY-----GLVPK-PEHY 736 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~i~p~-~~~y 736 (968)
..|...|++++|++.|++..+. .-.|+ ..++..+...+...|++++|..+|+...+.. +-.|. ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999873 11344 4578888889999999999999999886541 11232 5678
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHHccCCCCc
Q 040643 737 ACVVDLLGRAGCLSRAREFTEQM----------PIEPD-AMVWRTLLSACRVHKN------MEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 737 ~~lv~~l~r~G~~~eA~~~~~~m----------~~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~l~p~~~ 799 (968)
..+..++.+.|++++|.+++++. ...|. ...|..+.......+. +..+....+.+....|..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88999999999999999998875 12333 3444444433433332 2233333333334456677
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 800 ATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 800 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
..+..|+.+|...|++++|.+..+...
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 789999999999999999999876543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-07 Score=104.63 Aligned_cols=226 Identities=10% Similarity=0.031 Sum_probs=128.2
Q ss_pred HHHHHhcCChhhHHHHHHHhhhcCC-cCC----cchHHHHHHHHhhhhhHHHHHHHHHHHHHh--CCC---C-ChhHHhH
Q 040643 568 ISGFAQSGYCEGALQVFSQMTQVGV-QAN----LYTFGSVVSAAANLANIKQGKQVHAMIIKT--GYD---S-ETEASNS 636 (968)
Q Consensus 568 i~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~---~-~~~~~~~ 636 (968)
...+...|++++|+..|++....-. .++ ..++..+-..+...|+.+.|...+..+++. ... + ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344556666666666666554311 122 234445555666666777666666655542 111 1 1345566
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC-hHHHHHH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPE-----KN----EVSWNAMITGFSQHGYALEAINLFEKMKKHD---VMPN-HVTFVGV 703 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~Pd-~~t~~~l 703 (968)
+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++..+.. ..|+ ..++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 77777777887777777766441 12 2466777777888888888888888776510 1233 4466677
Q ss_pred HHHHcccCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 040643 704 LSACSHVGLVNEGLRYFESMSTEYGLVPK---PEHYACVVDLLGRAGC---LSRAREFTEQMPIEPD-AMVWRTLLSACR 776 (968)
Q Consensus 704 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r~G~---~~eA~~~~~~m~~~p~-~~~~~~ll~~~~ 776 (968)
...+.+.|++++|..+|++..+...-.++ ...+..+..++...|+ +++|.+++++....|+ ...+..|...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 77777888888888888776554322222 2344555556666666 6666666666543333 223333333344
Q ss_pred hcCChhHHHHHHHHHHc
Q 040643 777 VHKNMEIGEYAANHLLE 793 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~ 793 (968)
..|+.+.|....+++++
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 45555555444444433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.9e-08 Score=107.86 Aligned_cols=297 Identities=9% Similarity=0.011 Sum_probs=195.9
Q ss_pred CCchhhhhHHHHH--HHcCCHHHHHHHHHhCCC--------CCcccHHHHHHH--HHhcCChhhHH---------HHHHH
Q 040643 528 DDLSIGNALISLY--ARCGRIQEAYLVFNKIDA--------KDNISWNGLISG--FAQSGYCEGAL---------QVFSQ 586 (968)
Q Consensus 528 ~~~~~~~~Li~~y--~k~g~~~~A~~~f~~m~~--------~d~~~~~~li~~--~~~~g~~~~A~---------~l~~~ 586 (968)
|+..+.+.|-+-| .+.+++++|..+++++.. .++..|-.++.. ....+..+.+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4455666666666 778888888888775432 123333333322 11112222222 55555
Q ss_pred hhhcCCcCCc-ch---HHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CC----ChhHHhHHhhHHHhcCCHHHHHHHHhcC
Q 040643 587 MTQVGVQANL-YT---FGSVVSAAANLANIKQGKQVHAMIIKTGY-DS----ETEASNSLITLYAKCGSIDDAKREFLEM 657 (968)
Q Consensus 587 m~~~g~~p~~-~t---~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~y~k~g~~~~A~~~f~~~ 657 (968)
+.......+. .. +...-..+...|+.++|...+..+.+..- .+ ...++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432211111 11 11222345678999999999998876321 12 2457778889999999999998888765
Q ss_pred C-----CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHH
Q 040643 658 P-----EK-----NEVSWNAMITGFSQHGYALEAINLFEKMKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFES 722 (968)
Q Consensus 658 ~-----~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~ 722 (968)
. .+ ...+++.+...|...|++++|++.|++.++. |-.+. ..++..+...+...|++++|.++|+.
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 11 2457889999999999999999999998762 11111 24678888899999999999999998
Q ss_pred hhhhcC--CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHH
Q 040643 723 MSTEYG--LVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PI--EPD-AMVWRTLLSACRVHKN---MEIGEYAAN 789 (968)
Q Consensus 723 m~~~~~--i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~ 789 (968)
..+... ..|. ...+..++.++.+.|++++|.+.+++. +- .|. ...+..|...+...++ ++.|...++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 765211 1233 667888999999999999999999876 21 333 3344444444666777 666666665
Q ss_pred HHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 790 HLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+ ....|.....+..|+.+|...|++++|.+..+..
T Consensus 328 ~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 328 K-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5 2233455667889999999999999999875544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=5.6e-08 Score=102.99 Aligned_cols=183 Identities=9% Similarity=0.051 Sum_probs=123.2
Q ss_pred hHHHhcCCHHHHHHHHhcCCC-------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------hHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMPE-------K--NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-------HVTFVG 702 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~~-------~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-------~~t~~~ 702 (968)
..|...|++++|.+.|++..+ + ...+|+.+...|...|++++|+..|++.++ +.|+ ..++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 346667777777777765431 1 145788888888888888888888888876 3331 236777
Q ss_pred HHHHHccc-CcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---H-----HHH
Q 040643 703 VLSACSHV-GLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD---A-----MVW 768 (968)
Q Consensus 703 ll~a~~~~-g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~---~-----~~~ 768 (968)
+..++... |++++|+.+|++..+.+.-..+ ...|..++.+|.+.|++++|.+.+++. ...|+ . ..|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 88888886 9999999999877553211111 345778889999999999999998876 22332 1 145
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCcch-----HHHHHHHHh--hcCCcchHHHHHH
Q 040643 769 RTLLSACRVHKNMEIGEYAANHLLELEPEDSAT-----YVLLSNIYA--AAGKWDCRDQIRQ 823 (968)
Q Consensus 769 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~ 823 (968)
..+...+...|+++.|....+++++++|+.... +..|...|. ..++|++|.+..+
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 666666788899999999999999999986653 334555554 4456777666543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.9e-08 Score=104.23 Aligned_cols=217 Identities=10% Similarity=-0.011 Sum_probs=121.0
Q ss_pred CHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhc----CCcCC-cchHHHHHHHHhhhhhHHHHHHHH
Q 040643 545 RIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQV----GVQAN-LYTFGSVVSAAANLANIKQGKQVH 619 (968)
Q Consensus 545 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 619 (968)
++++|...|++. ...|...|++++|++.|.+.... |-.++ ..++..+-.++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477887776654 66777888888888888776542 11111 223344444444444444444444
Q ss_pred HHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC--
Q 040643 620 AMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH-GYALEAINLFEKMKKHDVMPN-- 696 (968)
Q Consensus 620 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~Pd-- 696 (968)
..+++. +.+.|+...+ ..+|+.+...|... |++++|+..|++.++ +.|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~ 152 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQ 152 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTT
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCC
Confidence 433321 0011111111 23566677777775 777777777777766 3332
Q ss_pred -----hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-----chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 040643 697 -----HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-----EHYACVVDLLGRAGCLSRAREFTEQM-PIEPDA 765 (968)
Q Consensus 697 -----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~ 765 (968)
..++..+...+...|++++|..+|+...+...-.+.. ..|..++.++...|++++|...+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2356667777777777777777777765431111111 13556667777778888888777776 444541
Q ss_pred ------HHHHHHHHHHH--hcCChhHHHHHHHHHHccCCCCcc
Q 040643 766 ------MVWRTLLSACR--VHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 766 ------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
..+..|+.++. ..++++.|....+++++++|.+..
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 12344455553 334566666666777777775543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.79 E-value=6.4e-07 Score=98.57 Aligned_cols=258 Identities=9% Similarity=-0.036 Sum_probs=158.5
Q ss_pred HHHHHHcCCHHHHHHHHHhCC----CCCc----ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc-CCc----chHHHHH
Q 040643 537 ISLYARCGRIQEAYLVFNKID----AKDN----ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ-ANL----YTFGSVV 603 (968)
Q Consensus 537 i~~y~k~g~~~~A~~~f~~m~----~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll 603 (968)
...+...|++++|...+++.. ..+. .+++.+...|...|++++|...+++.....-. ++. .++..+-
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334555666666666655421 1121 13455556666677777777777665542111 111 1233444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh----CCC--C-ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC------CHHHHHHH
Q 040643 604 SAAANLANIKQGKQVHAMIIKT----GYD--S-ETEASNSLITLYAKCGSIDDAKREFLEMP--EK------NEVSWNAM 668 (968)
Q Consensus 604 ~a~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~------d~~~~~~l 668 (968)
..+...|++++|...+..+++. +.. | ....+..+...|...|++++|...+++.. .+ ...+|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 5566677777777777666542 221 2 23445567777888888888888887643 11 23467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHH-----HHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-----chHH
Q 040643 669 ITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFV-----GVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-----EHYA 737 (968)
Q Consensus 669 i~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~ 737 (968)
...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|..+++..... .|.. ..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCTTCGGGHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCCcchhhHHHHH
Confidence 8888888999999999888875321222 11222 2233466889999999988877532 2221 1345
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM-------PIEPDA-MVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
.+..++...|++++|.+.+++. +..++. .++..+..++...|+.+.|....++++++.+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 6778888889999998888765 111222 24555556678889999999998888887653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-08 Score=118.86 Aligned_cols=188 Identities=11% Similarity=0.037 Sum_probs=90.3
Q ss_pred hhhhhHHHHHHHHHHHH--------HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc
Q 040643 607 ANLANIKQGKQVHAMII--------KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQH 675 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~ 675 (968)
...|+.++|.+.+..++ +. .+.+...+..+...|.+.|++++|.+.|+++. ..+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666665555 21 12234445555555555555555555555544 22445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAR 753 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~ 753 (968)
|++++|++.|++.++ +.|+ ...+..+..++...|++++ .+.|++..+. .|+ ...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555 4453 2345555555555555555 5555544322 333 344445555555555555555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHHHccCCCCcch
Q 040643 754 EFTEQM-PIEPD-AMVWRTLLSACRVHKN-----MEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 754 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~l~p~~~~~ 801 (968)
+.+++. .+.|+ ...|..+..++...++ .+...++.+.+.++.|+++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 555554 34444 3333333333322222 233344444444444444443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=95.54 Aligned_cols=179 Identities=9% Similarity=0.017 Sum_probs=115.8
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMP--EKN----EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFV 701 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~ 701 (968)
..+..+...+.+.|++++|...|+++. .|+ ...|..+..+|...|++++|+..|++.++ ..|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHH
Confidence 344455666777888888888888765 232 24677777888888888888888888887 556532 333
Q ss_pred HHHHHHcc------------------cCcHHHHHHHHHHhhhhcCCCCCcc-hHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 040643 702 GVLSACSH------------------VGLVNEGLRYFESMSTEYGLVPKPE-HYACVVDLLGRAGCLSRAREFTEQMPIE 762 (968)
Q Consensus 702 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~i~p~~~-~y~~lv~~l~r~G~~~eA~~~~~~m~~~ 762 (968)
.+..++.. .|+.++|...|+.+.+. .|+.. .+. ++.+.+.+.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~----a~~~l~~~~~~~~-------- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTD----ATKRLVFLKDRLA-------- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHH----HHHHHHHHHHHHH--------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHH----HHHHHHHHHHHHH--------
Confidence 33333332 34556666666555433 23311 111 1111111110000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc---chHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 040643 763 PDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS---ATYVLLSNIYAAAGKWDCRDQIRQIMKDRGV 830 (968)
Q Consensus 763 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 830 (968)
.....+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|.+..+.+...+.
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0112344457789999999999999999999986 5799999999999999999999888887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-07 Score=98.69 Aligned_cols=200 Identities=12% Similarity=0.031 Sum_probs=141.7
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC---hhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC----CHHHHH
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSE---TEASNSLITLYAKCGSIDDAKREFLEMP--EK----NEVSWN 666 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~----d~~~~~ 666 (968)
...+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++.. .| ....|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3455566667888999999999999998854 223 5677888899999999999999999876 23 245677
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHH
Q 040643 667 AMITGFSQ--------HGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYA 737 (968)
Q Consensus 667 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~ 737 (968)
.+..++.. .|++++|+..|++.++ ..|+.. ....+ ..+....... ...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~--------------~~~~~~~~~~-----~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT--------------QKIRELRAKL-----ARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 88888888 9999999999999998 567643 22221 1111111100 12245
Q ss_pred HHHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhc----------CChhHHHHHHHHHHccCCCCcc--
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVH----------KNMEIGEYAANHLLELEPEDSA-- 800 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~l~p~~~~-- 800 (968)
.+..+|.+.|++++|...+++. |-.|. ...|..+..++... |+++.|....+++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6777888888888888888776 33332 44565666666544 8889999999999999999863
Q ss_pred -hHHHHHHHHhhcCCcch
Q 040643 801 -TYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 801 -~~~~l~~~y~~~g~~~~ 817 (968)
++..+..++...|+.++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 45566666666555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.1e-07 Score=100.45 Aligned_cols=174 Identities=11% Similarity=-0.002 Sum_probs=138.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 647 IDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 647 ~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
.+...+.+......+...+..+...+...|+.++|+..|++.++ ..|+. ..+..+..++...|+.++|...|+....
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 33444555555555666777888889999999999999999998 78864 5788888899999999999999998754
Q ss_pred hcCCCCCcchHHHHH-HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC--cc
Q 040643 726 EYGLVPKPEHYACVV-DLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED--SA 800 (968)
Q Consensus 726 ~~~i~p~~~~y~~lv-~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~ 800 (968)
. .|+........ -.+.+.|+.++|.+.+++. ...|+ ...|..|...+...|+.+.|...++++++++|++ +.
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 56543333222 3366778888888888776 45565 7888999999999999999999999999999998 88
Q ss_pred hHHHHHHHHhhcCCcchHHHH-HHHH
Q 040643 801 TYVLLSNIYAAAGKWDCRDQI-RQIM 825 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~-~~~m 825 (968)
.+..|+.+|...|+.++|... |+.+
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998774 5444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-07 Score=98.71 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=119.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHh------CC-CCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC----------C-
Q 040643 599 FGSVVSAAANLANIKQGKQVHAMIIKT------GY-DSETEASNSLITLYAKCGSIDDAKREFLEMPE----------K- 660 (968)
Q Consensus 599 ~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~- 660 (968)
+..+...+...|++++|...+..+++. +- +....++..+...|...|++++|.+.|++..+ |
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 334444444455555555555444432 11 11244566677777777777777777766531 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhc------
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKH------DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEY------ 727 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------ 727 (968)
...+|..+...|...|++++|++.|+++.+. +-.|+ ..++..+...+...|++++|..+|+...+..
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 2457788888888889999999988888773 11444 3467788888889999999999998775531
Q ss_pred CCCCC-cchHHHHHHHHhh------cCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 040643 728 GLVPK-PEHYACVVDLLGR------AGCLSRAREFTEQMP-IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELE 795 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r------~G~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 795 (968)
...|. ...+..+...... ...+.++...++... ..|+ ..+|..|...+...|+.+.|....++++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 12333 2333333333333 333555555555553 3344 6677788888999999999999999988763
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=5.9e-08 Score=91.04 Aligned_cols=116 Identities=11% Similarity=0.038 Sum_probs=98.8
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK 779 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 779 (968)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|.+.+++. .+.|+ +.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677899999999998764 34555 555667899999999999999999987 66776 888999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 780 NMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 780 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
+.+.|+..++++++++|+++.+|..|+.+|...|++++|.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999999999999999999999999988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-07 Score=110.97 Aligned_cols=181 Identities=11% Similarity=-0.032 Sum_probs=93.9
Q ss_pred HhcCChhhHHHHHHHhhh------cCCcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhc
Q 040643 572 AQSGYCEGALQVFSQMTQ------VGVQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKC 644 (968)
Q Consensus 572 ~~~g~~~~A~~l~~~m~~------~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~ 644 (968)
...|++++|++.|++... ....|+. ..+..+..++...|++++|...+..+++.. +.+...+..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 455566666666665541 0122332 334444445555666666666665555532 23445555555556666
Q ss_pred CCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHH
Q 040643 645 GSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYF 720 (968)
Q Consensus 645 g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~ 720 (968)
|++++|.+.|++.. .| +...|..+...|.+.|++++ ++.|++.++ +.|+ ...+..+..++...|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666544 22 44555666666666666666 666666655 4554 334555555666666666666666
Q ss_pred HHhhhhcCCCCC-cchHHHHHHHHhhcCC--------hHHHHHHHHhC
Q 040643 721 ESMSTEYGLVPK-PEHYACVVDLLGRAGC--------LSRAREFTEQM 759 (968)
Q Consensus 721 ~~m~~~~~i~p~-~~~y~~lv~~l~r~G~--------~~eA~~~~~~m 759 (968)
++.. .+.|+ ...|..++.+|.+.|+ +++|.+.++++
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 5442 33454 3444445555544332 44555555444
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.67 E-value=2.9e-06 Score=87.93 Aligned_cols=174 Identities=9% Similarity=0.013 Sum_probs=116.9
Q ss_pred HHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 650 AKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 650 A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
|...|++.. .++..++..+..++...|+.++|++++.+.+..|-.++. ..+..++..+.+.|+.++|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555544 245555567777777788888888888877664432343 3566666777788888888888887754
Q ss_pred hcCCCC-----CcchHHHHH----HHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 040643 726 EYGLVP-----KPEHYACVV----DLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLEL- 794 (968)
Q Consensus 726 ~~~i~p-----~~~~y~~lv----~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 794 (968)
. .| +-....-+. .+....++.++|..+++++ .-.|+...-..|++++...|+++.|+...+.+.++
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 55 222233333 2222334888888888887 33455333344555777889999999999988887
Q ss_pred ---------CCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 795 ---------EPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 795 ---------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
+|+|+.++..+..++...|+ +|.+++..+++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48888888777778888887 888888877763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-07 Score=82.59 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
.|..+...|...|++++|+++|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+. .|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~---------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR---------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC----------
Confidence 466677777777777777777777766 3343 445555666666666666666666655432 121
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 743 LGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
+..+|..+...+...|+.+.|....+++++..|+++..+..++.+|...|++++|.+..
T Consensus 68 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 23333444444444455555555555555555555555555555555555555555544
Q ss_pred HHH
Q 040643 823 QIM 825 (968)
Q Consensus 823 ~~m 825 (968)
+.+
T Consensus 127 ~~~ 129 (136)
T 2fo7_A 127 QKA 129 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=90.58 Aligned_cols=73 Identities=14% Similarity=0.007 Sum_probs=58.9
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC--cchHHHHHHHHhhcCCcchHHHHHH
Q 040643 751 RAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED--SATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 751 eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
+|.+.+++. ...|+ ...|..+...+...|+.+.|...++++++++|+. +..+..|+.+|...|++++|....+
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 345555544 34565 7788888888999999999999999999999875 5689999999999999999987544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=3e-07 Score=107.64 Aligned_cols=158 Identities=11% Similarity=0.062 Sum_probs=123.6
Q ss_pred cCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHH
Q 040643 644 CGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~ 719 (968)
.|++++|.+.|++.. ..+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888999988876 23577899999999999999999999999998 6776 55788888899999999999999
Q ss_pred HHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CChhHHHHHHHHHHc
Q 040643 720 FESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH---KNMEIGEYAANHLLE 793 (968)
Q Consensus 720 ~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 793 (968)
|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. ...|+ ...|..+...+... |+.+.|....+++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9988654 455 678888999999999999999999887 45554 77888888888888 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 040643 794 LEPEDSATYVLLS 806 (968)
Q Consensus 794 l~p~~~~~~~~l~ 806 (968)
.+|++...|..|+
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999988877
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.58 E-value=4.2e-07 Score=82.75 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=79.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
.|..++..+.+.|++++|.++++++ ...| +..+|..+...+...|+.+.|....+++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4566777788888888888888776 2233 4777888888888899999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCC
Q 040643 813 GKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 813 g~~~~a~~~~~~m~~~g 829 (968)
|++++|.+..+.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999877776543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.9e-07 Score=87.29 Aligned_cols=101 Identities=6% Similarity=-0.073 Sum_probs=86.9
Q ss_pred cCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHH
Q 040643 727 YGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 727 ~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
..+.|+ .+.+..+...+.+.|++++|.+.+++. ...|+ +..|..|..++...|+++.|...++++++++|+++.+|.
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 355665 566777888888888999988888887 55665 889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHh
Q 040643 804 LLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 804 ~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.++.+|...|++++|.+..+...+
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999997665544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-07 Score=91.02 Aligned_cols=153 Identities=9% Similarity=0.035 Sum_probs=110.2
Q ss_pred HHHhcCCHHHHHHHHhcCC--CC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHH
Q 040643 640 LYAKCGSIDDAKREFLEMP--EK-NEVSWNA----------------MITGFSQHGYALEAINLFEKMKKHDVMPN-HVT 699 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t 699 (968)
.+.+.|++++|...|++.. .| +...|.. +...|...|++++|+..|++.++ +.|+ ...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHH
Confidence 3445566666666666554 22 2334444 88889999999999999999998 6786 457
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGC--LSRAREFTEQMPIEPDA--MVWRTLLSA 774 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~--~~eA~~~~~~m~~~p~~--~~~~~ll~~ 774 (968)
+..+..++...|++++|...|++..+ +.|+ ...|..+..+|...|+ .+++...++... .|+. ..|..+..+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 88888899999999999999998865 3666 6778888888876664 345566666653 4443 344444445
Q ss_pred HHhcCChhHHHHHHHHHHccCCCC
Q 040643 775 CRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
....|+.+.|+..+++++++.|++
T Consensus 167 ~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCH
Confidence 667889999999999999999964
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.51 E-value=3.7e-07 Score=82.57 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=64.1
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACR 776 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~ 776 (968)
+......+.+.|++++|++.|+...+. .|+ ...|..+..+|.+.|++++|.+.+++. .+.|+ ...|..+..++.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 444444444444444444444443321 232 344444455555555555555555443 33444 667777777788
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
..|+++.|...++++++++|++..++..|++++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 888888888888888888888888887777653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.50 E-value=3.5e-07 Score=82.65 Aligned_cols=99 Identities=9% Similarity=0.110 Sum_probs=87.9
Q ss_pred CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 729 LVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 729 i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
|.|+ .+.+.-.+..|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+.+.|...++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5566 566778899999999999999999987 55665 88898898999999999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 040643 806 SNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 806 ~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+.+|...|++++|.+..+...+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999997665543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=4e-07 Score=106.56 Aligned_cols=147 Identities=16% Similarity=0.042 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHH
Q 040643 675 HGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRA 752 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA 752 (968)
.|+.++|++.|++..+ ..|+ ...+..+..++...|++++|.++|++..+ +.|+ ...|..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4788999999999988 6786 56788889999999999999999998754 4666 77888999999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc---CCcchHHHHHHHHH
Q 040643 753 REFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAA---GKWDCRDQIRQIMK 826 (968)
Q Consensus 753 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~ 826 (968)
.+.+++. ...|+ ...|..+...+...|+.+.|...++++++++|+++..+..++.+|... |++++|.+..+...
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999987 45565 788989999999999999999999999999999999999999999999 88888877655443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.47 E-value=7.9e-07 Score=92.21 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChHHHHHHHHH--HcccC--cHHHHHHHHHHhhhhcCCCCCcc
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMP-----NHVTFVGVLSA--CSHVG--LVNEGLRYFESMSTEYGLVPKPE 734 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~i~p~~~ 734 (968)
.+-.++..|.+.|+.+.|.+.+++|.+ ..| +..+...|..+ ....| .+.+|..+|+++... .|+..
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~ 212 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWK 212 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcc
Confidence 344444445555555555555555544 344 23333333333 11122 455555555555333 22211
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CC----------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PI----------EPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~----------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
....+..++.+.|++++|++.++.+ .. .|+ +.+...++......|+ .|.+..+++.++.|+++...
T Consensus 213 ~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 213 TQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1112222455555555555555432 11 133 4444344444444554 66777778888888777544
Q ss_pred H
Q 040643 803 V 803 (968)
Q Consensus 803 ~ 803 (968)
.
T Consensus 291 d 291 (310)
T 3mv2_B 291 H 291 (310)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-06 Score=83.02 Aligned_cols=171 Identities=6% Similarity=-0.090 Sum_probs=120.9
Q ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC----cHHHHHHHHHHhh
Q 040643 650 AKREFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG----LVNEGLRYFESMS 724 (968)
Q Consensus 650 A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 724 (968)
|.+.|++.. ..++.++..+...|...|+.++|++.|++..+.| +...+..|...+.. | +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444433 3466677777777777778888888888777754 44556666666666 5 7788888887764
Q ss_pred hhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 040643 725 TEYGLVPKPEHYACVVDLLGR----AGCLSRAREFTEQM-PIEPD---AMVWRTLLSACRV----HKNMEIGEYAANHLL 792 (968)
Q Consensus 725 ~~~~i~p~~~~y~~lv~~l~r----~G~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 792 (968)
+. -+...+..|..+|.. .+++++|.+++++. ...|+ +..+..|...+.. .+|.+.|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 32 235556667777766 77888888888876 44443 6677777666666 778999999999999
Q ss_pred ccCCCCcchHHHHHHHHhhc-C-----CcchHHHHHHHHHhCC
Q 040643 793 ELEPEDSATYVLLSNIYAAA-G-----KWDCRDQIRQIMKDRG 829 (968)
Q Consensus 793 ~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g 829 (968)
++ |.++..+..|+.+|... | ++++|.+..+...+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88 77888899999999865 3 7888988877666554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.4e-06 Score=84.09 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=105.3
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH-H-Hc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLS-A-CS 708 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~-a-~~ 708 (968)
...+...+.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+ ..|+.. +..++. . +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 3455566777888888888888877 23667788888888888888888888888766 455332 222221 1 11
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhH
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD---AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~ 783 (968)
..+...++...|+...+ +.|+ ...+..+..+|.+.|++++|.+.++++ ...|+ ...|..|...+...|+.+.
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22222346677776654 3565 677778888888888888888888776 44543 5678888888888888888
Q ss_pred HHHHHHHHH
Q 040643 784 GEYAANHLL 792 (968)
Q Consensus 784 a~~~~~~~~ 792 (968)
|...+++.+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-07 Score=85.81 Aligned_cols=100 Identities=6% Similarity=0.010 Sum_probs=81.5
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
.+.|+ ...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 33443 455666777788888888888887776 4455 47888888888999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHh
Q 040643 805 LSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 805 l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
++.+|...|++++|.+..+...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987665543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.4e-06 Score=91.07 Aligned_cols=219 Identities=10% Similarity=0.018 Sum_probs=144.5
Q ss_pred cCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKRE 653 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 653 (968)
.|++++|.+++++..+..- .. + +...++++.|...+..+ ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4677888888887664311 10 0 01135555555555443 4567778888888887
Q ss_pred HhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--hHHHHHHHHHHcccCcHHHHHHH
Q 040643 654 FLEMPE-----KN----EVSWNAMITGFSQHGYALEAINLFEKMKKHD---VMPN--HVTFVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 654 f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~Pd--~~t~~~ll~a~~~~g~~~~a~~~ 719 (968)
|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.- -.|+ ..++..+...+.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776541 12 3478888888999999999999998876521 1222 2467778888888 999999999
Q ss_pred HHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHH
Q 040643 720 FESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRVHKNMEIGEYA 787 (968)
Q Consensus 720 ~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 787 (968)
|++....+.-..+ ...|..+..+|.+.|++++|.+.+++. |-.++ ...|..+...+...|+.+.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9877553211111 456778889999999999999988876 21222 22455555556677999999999
Q ss_pred HHHHHccCCCCcch-----HHHHHHHHhhcCCcchHHH
Q 040643 788 ANHLLELEPEDSAT-----YVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 788 ~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 820 (968)
+++++ ++|..... ...+...| ..|+.+++.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33444444 4566544444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-07 Score=95.25 Aligned_cols=190 Identities=8% Similarity=-0.059 Sum_probs=137.9
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
+...+..+...|.+.|++++|...|++.. .| +...|..+...|...|++++|++.|++.++ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44556677788889999999999998765 34 788899999999999999999999999988 6786 457888888
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIG 784 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 784 (968)
++...|++++|..+|+...+. .|+ ...+...+....+.++..+... .......++..++.. ++... .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~-l~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSY-LTRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHH-HHHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHH-HHHHH-HHHHHHH
Confidence 999999999999999887543 332 2223333433333332222222 222333444444433 34433 6889999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHhhc-CCcchHHHHHHHHHh
Q 040643 785 EYAANHLLELEPEDSATYVLLSNIYAAA-GKWDCRDQIRQIMKD 827 (968)
Q Consensus 785 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 827 (968)
....+++++++|++......+..++... +++++|.++.....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999988888888888887 778999988776544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.3e-06 Score=85.23 Aligned_cols=158 Identities=9% Similarity=0.007 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHH----------------HHHHHcccCcHHHHHHHHHHhhh
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVG----------------VLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
..+-.....+...|++++|+..|++.++ ..|+. ..+.. +..++...|++++|...|+...+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444556677899999999999999998 78874 45666 88889999999999999998865
Q ss_pred hcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC--hhHHHHHHHHHHccCCCCcc
Q 040643 726 EYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKN--MEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 726 ~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~l~p~~~~ 800 (968)
. .|+ ...+..+..+|...|++++|.+.+++. .+.|+ ..+|..+...+...|+ .+.+....++++...|.+ .
T Consensus 83 ~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 158 (208)
T 3urz_A 83 K---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-Y 158 (208)
T ss_dssp H---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-H
T ss_pred H---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-H
Confidence 4 565 778889999999999999999999987 56675 7788887777655543 344555566665444322 2
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 801 TYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.+..++..+...|++++|....+...
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45667888889999999998766553
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.41 E-value=3.5e-06 Score=85.10 Aligned_cols=182 Identities=13% Similarity=-0.017 Sum_probs=130.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC--ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCC-H---HHHHHHH
Q 040643 598 TFGSVVSAAANLANIKQGKQVHAMIIKTGYDS--ETEASNSLITLYAKCGSIDDAKREFLEMP--EKN-E---VSWNAMI 669 (968)
Q Consensus 598 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d-~---~~~~~li 669 (968)
.+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++.. .|+ . ..|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34455567888999999999999998854221 13567788899999999999999999876 332 2 2455555
Q ss_pred HHHHh------------------cCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCC
Q 040643 670 TGFSQ------------------HGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLV 730 (968)
Q Consensus 670 ~~~~~------------------~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 730 (968)
..+.. .|+.++|+..|+++++ ..|+.. ........ + .+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l----~------~~~~~~------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL----V------FLKDRL------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH----H------HHHHHH-------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH----H------HHHHHH-------
Confidence 55554 5789999999999998 678754 22221110 0 001111
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 731 PKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 731 p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
....-.++..|.+.|++++|...++++ ...|+ ...|..+..++...|+.+.|....+++....|++..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 012235678899999999999988886 33343 356778888899999999999999999999997654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.39 E-value=9.8e-06 Score=84.97 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHH--HHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCC---
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVN--EGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGC--- 748 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~--- 748 (968)
++.++++++++++++ ..|. ...|..-.....+.|.++ +++++++.+.+. .|. -..|..-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 124 FDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCC
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccch
Confidence 344555555555554 3342 234444444444444444 455555544332 222 2222222333333333
Q ss_pred ---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC-hhHHHHHHHHHHccC---CCCcchHHHHHHHHhhcCCcchHH
Q 040643 749 ---LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKN-MEIGEYAANHLLELE---PEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 749 ---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
+++++++++++ ...|+ ...|..+-......|+ .+.....++++++++ |.++.++..|+.+|.+.|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 55555555554 33343 6666665555555554 333445666666655 566666666666666666666666
Q ss_pred HHHHHHHh
Q 040643 820 QIRQIMKD 827 (968)
Q Consensus 820 ~~~~~m~~ 827 (968)
++.+.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-06 Score=81.17 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=77.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344555666777778888888777775 3455 47788888888999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 040643 811 AAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~ 827 (968)
..|++++|.+..+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999987665543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=4e-06 Score=83.66 Aligned_cols=145 Identities=8% Similarity=-0.041 Sum_probs=109.4
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGL 712 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~ 712 (968)
+..+...|.+.|++++|.+.|++..+++...|..+...|...|++++|++.|++.++ +.|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 344566788889999999999998888888999999999999999999999999988 5565 4578888888889999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHL 791 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 791 (968)
+++|...|+...+. .|+..... +...| +...|+ ..+|..+...+...|+.+.|...++++
T Consensus 87 ~~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999887653 23211000 00000 123444 566777777788889999999999999
Q ss_pred HccCCCCc
Q 040643 792 LELEPEDS 799 (968)
Q Consensus 792 ~~l~p~~~ 799 (968)
+++.|++.
T Consensus 148 l~~~p~~~ 155 (213)
T 1hh8_A 148 TSMKSEPR 155 (213)
T ss_dssp HTTCCSGG
T ss_pred HHcCcccc
Confidence 99998764
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.5e-06 Score=85.20 Aligned_cols=121 Identities=7% Similarity=-0.006 Sum_probs=82.7
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKN 780 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 780 (968)
+...+...|++++|...|+.. +.|+...|..++.++.+.|++++|.+.+++. ...| +..+|..+...+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 333444455555555555433 2344445555555555566666665555554 2233 36677777777888888
Q ss_pred hhHHHHHHHHHHccCCCCc----------------chHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 781 MEIGEYAANHLLELEPEDS----------------ATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.+.|...+++++++.|++. ..+..++.+|...|++++|.+..+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888888877 89999999999999999999987766553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.5e-06 Score=86.05 Aligned_cols=158 Identities=9% Similarity=-0.017 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----c
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-H----VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----P 733 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~ 733 (968)
..+...+..+...|++++|++.+++.++..-..+ . ..+..+...+...|++++|..+|+...+...-.++ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3555667778888888888888888777321111 1 12334555667788888888888876542211111 3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------C
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-------PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE------D 798 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~ 798 (968)
..|..++.+|...|++++|.+.+++. |..+. ..++..+...+...|+++.|....++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46778888888888888888888765 22221 257788888899999999999999999887543 1
Q ss_pred cchHHHHHHHHhhcCCcchH-HH
Q 040643 799 SATYVLLSNIYAAAGKWDCR-DQ 820 (968)
Q Consensus 799 ~~~~~~l~~~y~~~g~~~~a-~~ 820 (968)
+..|..++.+|...|++++| ..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHH
Confidence 56789999999999999999 66
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.33 E-value=7.1e-05 Score=84.92 Aligned_cols=374 Identities=10% Similarity=-0.006 Sum_probs=211.4
Q ss_pred ccC-ChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCC-hHHHHHHH
Q 040643 261 RSG-NLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGA-FRTGEQLH 338 (968)
Q Consensus 261 ~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~ 338 (968)
+.| +++.|+.+|+.+.. .+-. |+.+.+..+|++-... .|+...|..-+.-..+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 456 37888888776531 1111 8899999999998874 5787777777777666553 45567788
Q ss_pred HHHHHh-CCCC-ChhhHhHHHHHHH----hcCChhHHHHHHhhCCC-C--Cc-chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040643 339 SYAIKV-GISK-DIIVEGSMLDLYV----KCSDVETAYKFFLTTET-E--NV-VLWNVMLVAYGQLNDLSESFQIFKQMQ 408 (968)
Q Consensus 339 ~~~~~~-g~~~-~~~~~~~Li~~y~----~~g~~~~A~~~f~~~~~-~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 408 (968)
..++.. |..+ +..+|...+..+. ..++++.++++|++... | +. ..|...... .+......+..++.+..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 877765 5433 5567777776654 23567788888877533 2 11 112222111 11112222333322211
Q ss_pred hcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCC-------hhHHHH
Q 040643 409 TEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGM-------FGEALE 481 (968)
Q Consensus 409 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~ 481 (968)
+.+..++.++ ..+...+.+ .+...|...+.--..++. .+.+..
T Consensus 151 ---------------------~~y~~ar~~y------~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 151 ---------------------PIFQSSFQRY------QQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp ---------------------HHHHHHHHHH------HHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHH------HHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 1122222222 112222221 133356555554322211 234667
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHH-HHHHHhCC--C
Q 040643 482 LFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEA-YLVFNKID--A 558 (968)
Q Consensus 482 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~m~--~ 558 (968)
+|++++... +.+...|...+.-+...|+.+.++.++...++. +.+..++. .|+...+.++. ..+.+... +
T Consensus 201 ~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 201 IHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhc
Confidence 788877642 334555666666667778888888888888887 33333332 23332211111 11111110 0
Q ss_pred -------C---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhh-hHHHHHHHHHHHHHhCC
Q 040643 559 -------K---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLA-NIKQGKQVHAMIIKTGY 627 (968)
Q Consensus 559 -------~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~ 627 (968)
+ ....|-..+....+.+..+.|..+|.+. ... .++...|......-...+ +.+.|+.+++..++..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~- 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH- 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 0 1234666677776778889999999888 221 112222221111111223 5888999999888753
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
+.++..+...++...+.|+.+.|+.+|+.+. +....|...+.--..+|+.+.+.++++++..
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3345566778888889999999999999984 4678898888888888998888888888774
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.5e-05 Score=82.40 Aligned_cols=158 Identities=10% Similarity=-0.043 Sum_probs=113.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHH
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHD-VMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYA 737 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~ 737 (968)
..+..+...|++++|++++++..+.. ..|+.. .+..+...+...|++++|..+|+...+...-.++ ...|.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667778888888888888887632 122211 2234666677778888888888887653222222 22578
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-------CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchH
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM-------PIE-PD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATY 802 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m-------~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~ 802 (968)
.++.+|.+.|++++|.+.++++ |.. |. ..++..+...+...|+++.|...+++++++.++. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888888888888887765 111 22 4577888888999999999999999999886554 6789
Q ss_pred HHHHHHHhhcCC-cchHHHHHHH
Q 040643 803 VLLSNIYAAAGK-WDCRDQIRQI 824 (968)
Q Consensus 803 ~~l~~~y~~~g~-~~~a~~~~~~ 824 (968)
..++.+|...|+ +++|.+..+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHH
Confidence 999999999996 5999875443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.4e-06 Score=86.16 Aligned_cols=151 Identities=9% Similarity=0.029 Sum_probs=89.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHH-HHHHHHhcCCH
Q 040643 602 VVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNA-MITGFSQHGYA 678 (968)
Q Consensus 602 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~-li~~~~~~g~~ 678 (968)
+...+...|+.++|...+..+++.. +.+...+..|...|.+.|++++|...|+++. .|+...+.. ....+...|+.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 3334444555555555555554432 2345566667777777777777777777776 344433222 22235566666
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHHhhcCChHHHHH
Q 040643 679 LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK---PEHYACVVDLLGRAGCLSRARE 754 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r~G~~~eA~~ 754 (968)
++|++.|++..+ ..|+ ...+..+..++...|++++|...|..+.+. .|+ ...+..++.+|...|+.++|..
T Consensus 202 ~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 202 TPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp CHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred CccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 677777777776 5565 345666667777777777777777766544 333 3455666666666666666665
Q ss_pred HHHh
Q 040643 755 FTEQ 758 (968)
Q Consensus 755 ~~~~ 758 (968)
.+++
T Consensus 277 ~~r~ 280 (287)
T 3qou_A 277 XYRR 280 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.2e-05 Score=78.35 Aligned_cols=226 Identities=14% Similarity=0.095 Sum_probs=162.5
Q ss_pred CChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhh--hHHHHHHHHHHHHHhCCCCChhHHhHHhhHH----Hhc---
Q 040643 575 GYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLA--NIKQGKQVHAMIIKTGYDSETEASNSLITLY----AKC--- 644 (968)
Q Consensus 575 g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~k~--- 644 (968)
...++|++++.+++.. .|+..| ++.--......+ .++++......++... +-+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3345677777776653 455544 233333444555 6777777777776653 23344454433333 444
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCc------
Q 040643 645 GSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYAL--EAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGL------ 712 (968)
Q Consensus 645 g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~------ 712 (968)
++++++.++++.+. .+|..+|+--...+.+.|.++ ++++.++++++ ..|. ...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 78899999999876 568889998888888889888 99999999998 5664 5567766666677676
Q ss_pred HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSR-AREFTEQM-PI----EPDAMVWRTLLSACRVHKNMEIGE 785 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~e-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~ 785 (968)
+++++++++.+... .|+ ...|.-...++.+.|+..+ +.++.++. .. ..+...|..|...+...|+.+.|.
T Consensus 202 ~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999987654 555 6667777888888888544 56677776 22 235788888999988999999999
Q ss_pred HHHHHHHc-cCCCCcchHHHHHHH
Q 040643 786 YAANHLLE-LEPEDSATYVLLSNI 808 (968)
Q Consensus 786 ~~~~~~~~-l~p~~~~~~~~l~~~ 808 (968)
.+.+.+.+ +||-+..+|...++.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHhccChHHHHHHHHHHhh
Confidence 99999996 899998888776553
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=3.7e-06 Score=75.84 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|++.|++..+ ..|+ ...+..+...+...|++++|..+++...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------- 74 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--------------- 74 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh---------------
Confidence 34555556666666666666666666655 3342 33444444444445555555444443322
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcc
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 816 (968)
..|+ ..+|..+...+...|+.+.|...+++++++.|+++..+..++.+|...|+++
T Consensus 75 --------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 75 --------------------IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred --------------------cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 2333 5667777777888888999999999999999999999999999999988764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00029 Score=79.83 Aligned_cols=333 Identities=10% Similarity=-0.018 Sum_probs=194.4
Q ss_pred CChHHHHHHHhhCC--CCCceeHHHHHHHHHhcCC-hhHHHHHHHHHHhc-CCCC-ChhhHHHHHHHhh----cccchhh
Q 040643 443 GNLNTAQEILRRLP--EDDVVSWTAMIVGFVQHGM-FGEALELFEEMENQ-GIQS-DNIGFSSAISACA----GIQALNQ 513 (968)
Q Consensus 443 ~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p-d~~t~~~ll~a~~----~~~~~~~ 513 (968)
++.+.+..+|++.. .|++..|...+.-..+.+. .+....+|+..+.. |..| +...|...+.-+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 66778888888765 3788899998888777763 45677788876654 4434 4455666665543 2467888
Q ss_pred hhhhhHhhhhhcCCCCchhhhhHHHHHHH-----------------cCCHHHHHHHHHhCC----CCCcccHHHHHHHHH
Q 040643 514 GRQIHAQSYISGFSDDLSIGNALISLYAR-----------------CGRIQEAYLVFNKID----AKDNISWNGLISGFA 572 (968)
Q Consensus 514 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k-----------------~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~ 572 (968)
++.++..++......- ..+-..|.. .+.+..|+.+++.+. ..+...|...+.--.
T Consensus 108 vR~iy~rAL~~P~~~~----~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSL----SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHTSCCTTH----HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhH----HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 9999999887422111 222222222 112223343333222 113335655544422
Q ss_pred hcCC-------hhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcC
Q 040643 573 QSGY-------CEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCG 645 (968)
Q Consensus 573 ~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 645 (968)
.++. .+.+..+|+++.... .-+...+...+.-+.+.|+.+.|+.+++.+++. +.+...+.. |+...
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~ 256 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVM 256 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHT
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhc
Confidence 2211 234566788877642 223445555556667788899999999998887 444444332 33322
Q ss_pred CHHHHH-HHHhcCC------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HcccC
Q 040643 646 SIDDAK-REFLEMP------------EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSA-CSHVG 711 (968)
Q Consensus 646 ~~~~A~-~~f~~~~------------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a-~~~~g 711 (968)
..++.. .+.+... ......|-..+..+.++|..+.|.++|++. +.. .++...|...... +...+
T Consensus 257 e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 257 DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp TCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCC
Confidence 111111 1111110 112246777777777778888899999888 311 1222233321111 11234
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHL 791 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 791 (968)
+.+.|+.+|+...+.++-.| +.+...++.+.+.|+.+.|..++++.+ .....|...+.--..+|+.+.+..+.++.
T Consensus 335 d~~~ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp CSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 68889999988877654333 345667787888888888888888873 35778888887777788877777666655
Q ss_pred H
Q 040643 792 L 792 (968)
Q Consensus 792 ~ 792 (968)
+
T Consensus 411 ~ 411 (493)
T 2uy1_A 411 M 411 (493)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.8e-06 Score=81.08 Aligned_cols=116 Identities=12% Similarity=0.089 Sum_probs=75.2
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--h
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSA-CRVHKNM--E 782 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~ 782 (968)
..|++++|...|+...+. .|+ ...|..++.+|...|++++|.+.+++. ...| +..+|..+... +...|+. +
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 345555555555544332 232 445555556666666666666665554 2233 35666666666 6677887 8
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.|...++++++++|+++..+..++.+|...|++++|....+...+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 888888888888888888888888899989999888887665544
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.23 E-value=8.8e-06 Score=72.59 Aligned_cols=116 Identities=20% Similarity=0.276 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------
Confidence 44566666666666666666666666665 2343 334444444555555555555555444221
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
...+..+|..+...+...|+.+.|....+++++++|+++..+..++.++...|
T Consensus 73 --------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 --------------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred --------------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 12235677777777888888899999999999999999999999988887654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-06 Score=91.44 Aligned_cols=197 Identities=11% Similarity=0.021 Sum_probs=149.7
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEK 687 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 687 (968)
..|++++|.+++..+.+..-. . .+...|++++|...|++ ....|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 367888999998888764211 1 12225889999888765 46778899999999999999
Q ss_pred HHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCC--C--CcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 688 MKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLV--P--KPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 688 m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~--p--~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
..+. |-.+. ..+|..+...+...|++++|..+|++..+.+.-. | ....|..+..+|.+ |++++|.+.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8762 21112 2478888899999999999999999875543211 1 14678889999999 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc------hHHHHHHHHhhcCCcchHHHHHHH
Q 040643 759 M-PIE---PD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA------TYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 759 m-~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
. .+. .+ ..++..+...+...|+++.|...+++++++.|++.. .+..++.+|...|++++|....+.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 211 11 567888888899999999999999999999876643 677788899999999999997665
Q ss_pred HH
Q 040643 825 MK 826 (968)
Q Consensus 825 m~ 826 (968)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 43
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.9e-06 Score=75.44 Aligned_cols=118 Identities=11% Similarity=-0.017 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV 739 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l 739 (968)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+...+...|++++|.++|+...+. .|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~-------- 81 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EP-------- 81 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CT--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CC--------
Confidence 455677777777777777777777777776 4453 345555555666666666666666554332 11
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 740 VDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
.+..+|..+...+...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 82 -----------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 -----------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred -----------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 2356677777778888888888899999999999999999999999987764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.21 E-value=7.5e-06 Score=88.27 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHH
Q 040643 644 CGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYF 720 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~ 720 (968)
.+++++|.+.|+... .| +...|..+...|.+.|++++|+..|++.++ +.|+...+ . .+++.+.
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~---------~--~~~~~~~- 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF---------S--NEEAQKA- 191 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC---------C--SHHHHHH-
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC---------C--hHHHHHH-
Confidence 345556666665544 22 456888899999999999999999999988 55654210 0 0111111
Q ss_pred HHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 721 ESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 721 ~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
..+ ....|..+..+|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+++.|...++++++++|++
T Consensus 192 ~~~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 192 QAL--------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 000 0234666777777777777777777766 44554 7788888888999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCcchHHH-HHHHH
Q 040643 799 SATYVLLSNIYAAAGKWDCRDQ-IRQIM 825 (968)
Q Consensus 799 ~~~~~~l~~~y~~~g~~~~a~~-~~~~m 825 (968)
..++..|+.+|...|++++|.+ ..+.|
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999944 44444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-05 Score=77.26 Aligned_cols=171 Identities=8% Similarity=-0.074 Sum_probs=117.9
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-EKNEVSWNAMITGFSQHG----YALEAINLFEKMKK 690 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~ 690 (968)
.+.+....+.| ++.....|..+|...+++++|.+.|++.. ..++.++..|...|.. | +.++|++.|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 34444444433 55666677777777888888888887765 3466777777777776 5 78888888888876
Q ss_pred CCCCCChHHHHHHHHHHcc----cCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHHhh----cCChHHHHHHHHhC
Q 040643 691 HDVMPNHVTFVGVLSACSH----VGLVNEGLRYFESMSTEYGLVPK---PEHYACVVDLLGR----AGCLSRAREFTEQM 759 (968)
Q Consensus 691 ~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r----~G~~~eA~~~~~~m 759 (968)
.| +...+..|...+.. .+++++|.++|+...+ ..|. +..+..|..+|.. .+++++|.+++++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 54 45566667777766 7788888888887643 3443 5667778888877 77888888888876
Q ss_pred -CCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHHHccCC
Q 040643 760 -PIEPDAMVWRTLLSACRV------HKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 760 -~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~l~p 796 (968)
...++...+..|...+.. ..|.+.|...++++.+..+
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 222344455555555432 2388889888888888754
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-06 Score=80.36 Aligned_cols=101 Identities=8% Similarity=-0.084 Sum_probs=54.8
Q ss_pred HHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 040643 702 GVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH 778 (968)
Q Consensus 702 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 778 (968)
.+...+...|++++|...|+..... .|+ ...|..+..+|.+.|++++|.+.+++. .+.|+ ...|..+..++...
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3333444444444444444433221 222 333344444444445555555444443 22333 45666666677778
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
|+.+.|...+++++++.|+++......
T Consensus 103 g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 103 GELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp TCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 888888888888888888877665444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=5.6e-06 Score=74.58 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=76.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
+.+..++..+.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.|...++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555667777788888888777765 44454 77888888888899999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 040643 812 AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~ 827 (968)
.|++++|.+..+...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999887665543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.18 E-value=8.7e-06 Score=77.20 Aligned_cols=127 Identities=6% Similarity=0.001 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|+..|++.++ ..|+ ..++..+...+...|++++|..+|+...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--------------- 75 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--------------- 75 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Confidence 34566666666677777777777777666 3443 33455555555555555555555554432
Q ss_pred HHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH--HHHhhcCCcch
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS--NIYAAAGKWDC 817 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~--~~y~~~g~~~~ 817 (968)
..| +..+|..+...+...|+.+.|...++++++++|++...+..+. ..+...|++++
T Consensus 76 --------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 76 --------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 223 3566777777788888888999999999999999888885444 44888899999
Q ss_pred HHHHHHHH
Q 040643 818 RDQIRQIM 825 (968)
Q Consensus 818 a~~~~~~m 825 (968)
|.+..+..
T Consensus 136 A~~~~~~~ 143 (166)
T 1a17_A 136 AIAGDEHK 143 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHcccch
Confidence 98876554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.6e-06 Score=86.10 Aligned_cols=136 Identities=11% Similarity=-0.023 Sum_probs=78.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHh
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLG 744 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~ 744 (968)
.....+...|++++|.++|+.+.. ..|+......+...+.+.|++++++.+|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 344555556666666666666554 2354444444444566666666666666533211 0 111 123455566666
Q ss_pred hcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 745 RAGCLSRAREFTEQM---PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 745 r~G~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
+.|++++|++.+++. +.+|. ...+..+..+++..|+.+.|...++++++.+|+ +..+..|.+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 677777776666655 33243 335555666677778888888888888888887 666655544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=3.4e-06 Score=75.43 Aligned_cols=94 Identities=18% Similarity=0.068 Sum_probs=81.9
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..+..+...+.+.|++++|...+++. ...|+ ...|..+..++...|+.+.|+..++++++++|+++..+..|+.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44566778889999999999999887 55664 88888888889999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 040643 812 AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~ 827 (968)
.|++++|....+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999997765543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-05 Score=70.38 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=78.9
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CcchHHHHHHH
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE--DSATYVLLSNI 808 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 808 (968)
...+..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 556777788888888888888887776 3344 4777888888888999999999999999999999 99999999999
Q ss_pred Hhhc-CCcchHHHHHHHHHh
Q 040643 809 YAAA-GKWDCRDQIRQIMKD 827 (968)
Q Consensus 809 y~~~-g~~~~a~~~~~~m~~ 827 (968)
|... |++++|.+..+....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 9999 999999988776644
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.1e-06 Score=82.56 Aligned_cols=164 Identities=9% Similarity=-0.019 Sum_probs=104.9
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC
Q 040643 635 NSLITLYAKCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG 711 (968)
Q Consensus 635 ~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 711 (968)
+..+......|.+++|.+.++...+ .....|..+...+...|++++|++.|++.++ +.|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------
Confidence 3444555667778888777775442 2455788888899999999999999999988 44542211000
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
..++-. ..+ ....|..+..+|.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.|...++
T Consensus 78 ~~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 000 0234555666777777777777776665 33443 6777788888889999999999999
Q ss_pred HHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 790 HLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
++++++|++...+..++.++...|+.+++.
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887776
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=5.4e-06 Score=77.22 Aligned_cols=118 Identities=12% Similarity=0.000 Sum_probs=70.1
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccC
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVG 711 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g 711 (968)
+.+.+.+.....+.+++|.++ .+.+...|..+...+.+.|++++|+..|++.++ +.|+ ...|..+..++...|
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHc
Confidence 334455555444444433221 122455677777777788888888888888777 5665 446666777777777
Q ss_pred cHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 712 LVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
++++|...|+...+. .|+ ...|..+..+|.+.|++++|.+.+++.
T Consensus 85 ~~~~Ai~~~~~al~l---~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 85 QFQQAADLYAVAFAL---GKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp CHHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766432 343 444555555555555555555554443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.12 E-value=6.3e-06 Score=93.47 Aligned_cols=114 Identities=6% Similarity=0.037 Sum_probs=77.9
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 783 (968)
+...|++++|.++|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+.+.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33445555555555544322 333 444555556666666666666665554 34454 6778888888899999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHH--HhhcCCcchHHHHHH
Q 040643 784 GEYAANHLLELEPEDSATYVLLSNI--YAAAGKWDCRDQIRQ 823 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 823 (968)
|+..++++++++|+++..+..++.+ |...|++++|.+..+
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998 889999999998755
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-05 Score=76.49 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=68.2
Q ss_pred hcCCHHHHHH---HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHcccCcHH
Q 040643 643 KCGSIDDAKR---EFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK----HDVMPN-HVTFVGVLSACSHVGLVN 714 (968)
Q Consensus 643 k~g~~~~A~~---~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~Pd-~~t~~~ll~a~~~~g~~~ 714 (968)
..|++++|.+ .+..-+.....+|+.+...|...|++++|+..|++.++ .|..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4677778877 55443334566778888888888888888888887765 222222 235666666777777777
Q ss_pred HHHHHHHHhhhhcCCCC-C----cchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 715 EGLRYFESMSTEYGLVP-K----PEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 715 ~a~~~~~~m~~~~~i~p-~----~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
+|..+|++..+...-.| + ...+..+..++.+.|++++|.+.+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77777776544321111 1 22344455555555555555555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00016 Score=76.12 Aligned_cols=158 Identities=7% Similarity=-0.091 Sum_probs=116.1
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCC-----CCH---H-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh----HHHHH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPE-----KNE---V-SWNAMITGFSQHGYALEAINLFEKMKKHDVM-PNH----VTFVG 702 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~-----~d~---~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~----~t~~~ 702 (968)
.+..+...|++++|.+.+++..+ ++. . .+..+...+...|++++|++.|++.++.... +|. .++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35677888999999999887542 121 2 2334666677778999999999999884322 232 25888
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcC----CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYG----LVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-------PIEPD-AMVWR 769 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~----i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~p~-~~~~~ 769 (968)
+..++...|++++|..+|+.+.+.+. ..|. ...|..++.+|.+.|++++|.+.+++. ...+. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999998864322 1222 346788899999999999999988875 12233 67787
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHcc
Q 040643 770 TLLSACRVHKN-MEIGEYAANHLLEL 794 (968)
Q Consensus 770 ~ll~~~~~~g~-~~~a~~~~~~~~~l 794 (968)
.+...+...|+ .+.|....++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888888885 59999999988765
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=7.8e-06 Score=78.78 Aligned_cols=126 Identities=10% Similarity=0.076 Sum_probs=74.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH-HhhcCCh--
Q 040643 675 HGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP-KPEHYACVVDL-LGRAGCL-- 749 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~-l~r~G~~-- 749 (968)
.|++++|+..|++..+ ..|+ ...+..+...+...|++++|..+|+...+. .| +...+..++.+ +.+.|++
T Consensus 23 ~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp ----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred ccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcch
Confidence 3445555555555544 3343 334455555555555555555555554332 22 23445555555 5566666
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 750 SRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 750 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|+++.....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 6666666655 33444 66777777788888999999999999999999887665544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.08 E-value=6.6e-06 Score=76.03 Aligned_cols=74 Identities=8% Similarity=-0.083 Sum_probs=45.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
.|..+..+|.+.|++++|.+.+++. .+.|+ ...|..+..++...|+++.|...+++++++.|+++........+
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 3344444444455555555444443 22333 45566666667777888888888888888888887776655443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=5.9e-06 Score=93.71 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=84.9
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSH 709 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~ 709 (968)
+..+...|.+.|++++|.+.|++.. ..+..+|..+...|...|++++|++.|++.++ +.|+ ..++..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3445667778888888888888765 33577888888888888888888888888888 5675 4567778888888
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHH--HhhcCChHHHHHHHH
Q 040643 710 VGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDL--LGRAGCLSRAREFTE 757 (968)
Q Consensus 710 ~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~--l~r~G~~~eA~~~~~ 757 (968)
.|++++|.++|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888877554 343 3445555544 667777777777776
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.4e-06 Score=84.81 Aligned_cols=181 Identities=9% Similarity=-0.012 Sum_probs=136.5
Q ss_pred hcCCHHHHHHHHhcCC--CC-CHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCChH--------------
Q 040643 643 KCGSIDDAKREFLEMP--EK-NEVSWNAM-------ITGFSQHGYALEAINLFEKMKKHDVMPNHV-------------- 698 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~--~~-d~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-------------- 698 (968)
..++...|.+.|.++. .| ....|+.+ ...+...++..+++..+.+-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4688888999998876 33 56788877 4556655566666666666554 555432
Q ss_pred --------HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC----HH
Q 040643 699 --------TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPD----AM 766 (968)
Q Consensus 699 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~----~~ 766 (968)
....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|++.++...-.|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355678889999999999998754 245432556677799999999999999997743443 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccC--CC-CcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELE--PE-DSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
++-.|-.++...|+.+.|+..++++.+.. |. .+...+.++.++.+.|+.++|..+.+.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67777788999999999999999998654 55 5568899999999999999999988877663
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00039 Score=73.25 Aligned_cols=228 Identities=13% Similarity=0.089 Sum_probs=149.7
Q ss_pred hcCChh-hHHHHHHHhhhcCCcCCcchH-H---HHHHHHhh-------hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 573 QSGYCE-GALQVFSQMTQVGVQANLYTF-G---SVVSAAAN-------LANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 573 ~~g~~~-~A~~l~~~m~~~g~~p~~~t~-~---~ll~a~~~-------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
+.|.++ +|++++..+... .|+..|. + .++..... ...++++..+...++... +-+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444443 677777777754 5665543 1 12222111 112567777777777653 4466677776666
Q ss_pred HHhcC--CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHccc---
Q 040643 641 YAKCG--SIDDAKREFLEMP---EKNEVSWNAMITGFSQHGY-ALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHV--- 710 (968)
Q Consensus 641 y~k~g--~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~--- 710 (968)
+.+.| .++++..+++.+. .+|..+|+--.......|. .+++++.++++++ ..|+ ...|........+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhc
Confidence 77777 4789999888876 5578889888888888887 6899999999998 5664 44555554444433
Q ss_pred -----------CcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc-----------CChHHHHHHHHhC-CCCCCHH
Q 040643 711 -----------GLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA-----------GCLSRAREFTEQM-PIEPDAM 766 (968)
Q Consensus 711 -----------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~-----------G~~~eA~~~~~~m-~~~p~~~ 766 (968)
+.+++++++++..... .|+ ...|.-+-.++.+. +.++++.+.++++ .++||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 5678888888877543 565 44454444555554 5688888888887 677775
Q ss_pred HHHHHHHHH-----HhcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 767 VWRTLLSAC-----RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 767 ~~~~ll~~~-----~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
.|..+-.+. ...|..+.......++.++||...+.|.-|.+-+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 464332222 1356667778888999999998888887776543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.01 E-value=4.5e-05 Score=75.07 Aligned_cols=154 Identities=15% Similarity=0.051 Sum_probs=95.0
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMPE---------KNEVSWNAMITGFSQHGYALEAINLFEKMKKH----DVMP-N 696 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~---------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~P-d 696 (968)
..++..+...|...|++++|...|++..+ ....+|+.+...|...|++++|++.|++..+. |-.| .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 44555566666667777776666665431 13456777888888888888888888887662 1122 1
Q ss_pred -hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 040643 697 -HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTL 771 (968)
Q Consensus 697 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~l 771 (968)
...+..+...+...|++++|..+|++..+...-.++ ...+..+..++.+.|++++|.+.+++ .
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR------------A 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH------------H
Confidence 234667777888889999999988876543211111 23356677777778888877776654 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCC
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
+......|+......+...+-...|
T Consensus 174 l~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 174 RDIFAELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHhcccchhh
Confidence 3334445554444444444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.1e-05 Score=74.51 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCE
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNS 844 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~ 844 (968)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|....+...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 5678888888899999999999999999999999999999999999999999999876654432
Q ss_pred EEEEecCCCCCcchH-HHHHHHHHHHHHHHHc
Q 040643 845 IHAFFVGDRLHPLAD-KIYDYLGNLNRRVAEI 875 (968)
Q Consensus 845 ~~~f~~~d~~h~~~~-~i~~~l~~l~~~~~~~ 875 (968)
.|... .|...|..+..++++.
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 25555 6777788887777653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.9e-05 Score=72.12 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=75.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
...|..++..+...|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 455666667777777777777776665 33444 6778888888888999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 040643 811 AAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~ 827 (968)
..|++++|....+...+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999887665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00011 Score=67.69 Aligned_cols=115 Identities=10% Similarity=-0.007 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcch
Q 040643 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH----VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEH 735 (968)
Q Consensus 660 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~ 735 (968)
.+...|..+...+...|++++|++.|++..+ ..|+. ..+..+..++.+.|++++|..+|+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------- 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------- 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---------
Confidence 3667788888888888888888888888887 56763 44555555666666666666666554322
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
.| +..+|..+...+...|+.+.|...++++++++|++...+..+..+...
T Consensus 95 --------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 --------------------------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp --------------------------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred --------------------------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 23 355666666667777888888888888888888888777777766543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.98 E-value=3.9e-05 Score=67.43 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
+..|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|..+++...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------- 66 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--------------- 66 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------------
Confidence 34555566666666666666666666665 3443 33444444444455555555555444322
Q ss_pred HHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+.
T Consensus 67 --------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 67 --------------------LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 223 2555666666677777777777777788888887777776666553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=3.9e-05 Score=67.43 Aligned_cols=94 Identities=7% Similarity=0.072 Sum_probs=80.0
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..+..++..+.+.|++++|.+.+++. ...| +...|..+...+...|+.+.|...++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44566777788888888888888776 3344 577888888888999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 040643 812 AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~ 827 (968)
.|++++|.+..+...+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999998776654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.3e-05 Score=73.04 Aligned_cols=121 Identities=11% Similarity=0.077 Sum_probs=83.7
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHc
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACS 708 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~ 708 (968)
.+..+...|...|++++|...|++.. ..+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH
Confidence 34556667777888888888887654 34677788888888888888888888888887 4564 456777777888
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchH--HHHHHHHhhcCChHHHHHHHHh
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHY--ACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y--~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
+.|++++|..+|+...+. .|+ ...+ -.++..+.+.|++++|.+.+++
T Consensus 93 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 888888888888877543 333 2222 2333335566777777666554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.97 E-value=7.9e-05 Score=78.49 Aligned_cols=160 Identities=9% Similarity=-0.047 Sum_probs=103.3
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCC---CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--hHHH
Q 040643 635 NSLITLYAKCGSIDDAKREFLEMP---EKNE------VSWNAMITGFSQHGYALEAINLFEKMKKHDV---MPN--HVTF 700 (968)
Q Consensus 635 ~~li~~y~k~g~~~~A~~~f~~~~---~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~Pd--~~t~ 700 (968)
...+..|...|++++|.+.+++.. +.+. ..+..+...+...|++++|++.|++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 344556777788888877776432 1111 2233455556677788888888888775321 111 2367
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC------C-HHH
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-----PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP------D-AMV 767 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p------~-~~~ 767 (968)
..+...+...|++++|..+|++..+.....|+ ...|..++.+|.+.|++++|.+.+++. .+.+ . ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 77777888888888888888877633222333 146777788888888888888887765 1111 1 566
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHcc
Q 040643 768 WRTLLSACRVHKNMEIG-EYAANHLLEL 794 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a-~~~~~~~~~l 794 (968)
|..+...+...|+.+.| ....++++++
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 77777777888888888 6667776654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.9e-05 Score=75.00 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|+..++++++++|+++..|..++.+|...|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 334444444444444444444443 2233 24455555555555555555555566666666666666666666666666
Q ss_pred CcchHHHHHHH
Q 040643 814 KWDCRDQIRQI 824 (968)
Q Consensus 814 ~~~~a~~~~~~ 824 (968)
++++|.+..+.
T Consensus 94 ~~~~A~~~~~~ 104 (164)
T 3sz7_A 94 DYKGAKEAYEK 104 (164)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66666554443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.94 E-value=3.2e-05 Score=71.22 Aligned_cols=112 Identities=11% Similarity=-0.012 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------------HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-------------VTFVGVLSACSHVGLVNEGLRYFESMSTEYGL 729 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i 729 (968)
..|......+...|++++|+..|++.++ +.|+. ..|..+..++...|++++|+..|+...+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~---- 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH---- 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 3456667778888999999999999888 66651 1455555566666666666665554321
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHh-CCCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHH
Q 040643 730 VPKPEHYACVVDLLGRAGCLSRAREFTEQ-MPIEPD-AMVW----RTLLSACRVHKNMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 730 ~p~~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
+|++ .++.|+ ...| .....++...|+++.|...++++++++|+|.+.+-
T Consensus 86 -------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 86 -------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp -------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred -------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 1222 245887 6788 88888999999999999999999999999987654
Q ss_pred HH
Q 040643 804 LL 805 (968)
Q Consensus 804 ~l 805 (968)
-+
T Consensus 141 ~~ 142 (159)
T 2hr2_A 141 GK 142 (159)
T ss_dssp TH
T ss_pred HH
Confidence 43
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0002 Score=75.81 Aligned_cols=176 Identities=12% Similarity=0.062 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHH------
Q 040643 647 IDDAKREFLEMP---EKNEVSWNAMITGFSQH-G-YALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVN------ 714 (968)
Q Consensus 647 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~------ 714 (968)
++++.+.++.+. .++..+|+--...+... + +.++++++++++++ ..|. ...|..-.....+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhh
Confidence 555555555543 33455555555554444 4 55566666666655 3443 334444433333333333
Q ss_pred --HHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCC-------hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh-
Q 040643 715 --EGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGC-------LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNM- 781 (968)
Q Consensus 715 --~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~-------~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~- 781 (968)
+++++++++.+. .|. ...|.-...++.+.|+ +++++++++++ ...|+ ...|.-+-+.+...|+.
T Consensus 183 ~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 183 WGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCc
Confidence 666666655443 333 3334444455555554 56777777665 44554 77777666666555543
Q ss_pred -------------------hHHHHHHHHHHccC------CCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 782 -------------------EIGEYAANHLLELE------PEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 782 -------------------~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+.-...+..++... +..+-+...|+.+|...|+.++|.++.+.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222333333322 46677888999999999999999999888864
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.5e-05 Score=73.09 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV 739 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l 739 (968)
+...|..+...|...|++++|++.|++.++ +.|+ ...+..+..++...|++++|+.+|+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------- 72 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELAT--------------- 72 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH---------------
Confidence 344566666666666666666666666666 4453 3344444445555555555555554442
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 740 VDLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
.+.|+ ..+|..+...+...|+++.|...++++++++|++...+...+-.
T Consensus 73 --------------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 73 --------------------VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp --------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred --------------------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 22343 66777788888888999999999999999999999877665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.7e-05 Score=71.59 Aligned_cols=89 Identities=9% Similarity=0.025 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc-------hHHHHH
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA-------TYVLLS 806 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l~ 806 (968)
+..++..+.+.|++++|++.+++. .+.|+ ..+|..+..++...|+++.|...++++++++|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 445667777777888887777765 45565 778888888899999999999999999999998764 677788
Q ss_pred HHHhhcCCcchHHHHHHH
Q 040643 807 NIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 807 ~~y~~~g~~~~a~~~~~~ 824 (968)
++|...|++++|.+..+.
T Consensus 91 ~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999987554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.7e-05 Score=69.04 Aligned_cols=112 Identities=9% Similarity=-0.031 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|+...+. .|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~-------- 70 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPN-------- 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC--------
Confidence 34566667777777777777777777776 4554 345556666666666666666666655332 222
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCcchHHHHHHHH
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELE------PEDSATYVLLSNIY 809 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 809 (968)
+...|..+..++...|+.+.|....+++++++ |++......+..+.
T Consensus 71 -----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 71 -----------------------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 24555556666666677777777777777777 66666666665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=4e-05 Score=69.26 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=81.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
...+..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 555667778888888888888888876 5555 47788888888899999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 040643 811 AAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~ 827 (968)
..|++++|.+..+...+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999998776544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=9.1e-05 Score=68.36 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=81.1
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
...+..++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455666777788888888888888776 56676 6778888888899999999999999999999999999999999
Q ss_pred HHhhcCCcchHHHHHHHHHh
Q 040643 808 IYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 808 ~y~~~g~~~~a~~~~~~m~~ 827 (968)
+|...|++++|.+..+...+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999998766544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=9.9e-05 Score=66.16 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=93.2
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
+...+..+...|...|++++|.+.|++.. ..+...|..+...|...|++++|++.+++..+ ..|+ ...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHH
Confidence 45677888899999999999999999865 34788999999999999999999999999998 5675 557788888
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL 749 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~ 749 (968)
.+...|++++|..+|+...+. .|+ ...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHhcC
Confidence 899999999999999887554 443 45566666666666654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.85 E-value=5.7e-05 Score=67.11 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=76.9
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..+..++..+.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|...+++++++.|+++..+..++.+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 44556667777777777777777665 2233 477788888888999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 040643 812 AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~ 827 (968)
.|++++|.+..+.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 9999999998776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.8e-05 Score=69.16 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=64.0
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---cchHHHHHHHH
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED---SATYVLLSNIY 809 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y 809 (968)
.++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3555666677777777766665 22232 1466666666777888888888888888888888 66788888888
Q ss_pred hhcCCcchHHHHHHHHHh
Q 040643 810 AAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 810 ~~~g~~~~a~~~~~~m~~ 827 (968)
...|++++|....+...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888887665543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00027 Score=81.46 Aligned_cols=168 Identities=10% Similarity=0.023 Sum_probs=135.8
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHccc
Q 040643 645 GSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGY----------ALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHV 710 (968)
Q Consensus 645 g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~ 710 (968)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++++ ..|+ ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467788888766 3466788887777777777 8999999999998 6786 45788888888888
Q ss_pred C--cHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcC-ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc------
Q 040643 711 G--LVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAG-CLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH------ 778 (968)
Q Consensus 711 g--~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G-~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~------ 778 (968)
| ++++++++++++.+. .|. ...|.--..++.+.| .+++|.++++++ ...|+ ...|..........
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999998764 555 555666777788888 899999999988 56665 89998888776552
Q ss_pred --------CChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcch
Q 040643 779 --------KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 779 --------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 817 (968)
+.++.+...++++++++|+|..+|..+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 456889999999999999999999999999999999665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.83 E-value=7.6e-05 Score=67.17 Aligned_cols=91 Identities=9% Similarity=0.023 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--------c
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--------P 733 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--------~ 733 (968)
..|..+...|.+.|++++|++.|++.++ +.|+ ...|..+..++...|++++|++.|+...+. .|+ .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHH
Confidence 4566777778888888888888888877 6675 446777777788888888888877766432 222 1
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
..|..+...+...|++++|.+.+++
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2344444555555555555555544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.83 E-value=4.7e-05 Score=79.65 Aligned_cols=90 Identities=6% Similarity=-0.075 Sum_probs=45.9
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC-cchHHHHHHHHhh
Q 040643 533 GNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN-LYTFGSVVSAAAN 608 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 608 (968)
+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+. .|+ ...+..+..++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3444555555555555555555432 224445555555555666666666665555543 232 2333444444555
Q ss_pred hhhHHHHHHHHHHHHH
Q 040643 609 LANIKQGKQVHAMIIK 624 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~ 624 (968)
.|++++|...+..+.+
T Consensus 85 ~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 85 MESYDEAIANLQRAYS 100 (281)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.78 E-value=6.6e-05 Score=84.61 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=113.9
Q ss_pred hcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHH
Q 040643 643 KCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 719 (968)
..+++++|.+.|+...+ .+...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~- 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA- 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-
Confidence 44556667666665542 2456888899999999999999999999988 55543210 0 011110
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 720 FESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 720 ~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
.... ....|..+..+|.+.|++++|.+.+++. .+.|+ ...|..+..++...|+++.|...++++++++|+
T Consensus 312 ~~~~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 312 SESF--------LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 1111 1245667777788888888888777776 44554 778888888899999999999999999999999
Q ss_pred CcchHHHHHHHHhhcCCcchHHH-HHHHH
Q 040643 798 DSATYVLLSNIYAAAGKWDCRDQ-IRQIM 825 (968)
Q Consensus 798 ~~~~~~~l~~~y~~~g~~~~a~~-~~~~m 825 (968)
+..++..|+.+|...|+++++.+ ..+.|
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 34444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=0.003 Score=66.81 Aligned_cols=229 Identities=12% Similarity=0.076 Sum_probs=156.8
Q ss_pred HHhcCChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhh-hHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhc-C-C
Q 040643 571 FAQSGYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLA-NIKQGKQVHAMIIKTGYDSETEASNSLITLYAKC-G-S 646 (968)
Q Consensus 571 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~-g-~ 646 (968)
....+..++|++++.++... .|+..| ++.--......+ .++++..+...+++.. +-+..+|+.-...+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 34445556788888887754 555544 333333444556 4788888888777654 34566677666666665 6 7
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCc--
Q 040643 647 IDDAKREFLEMP---EKNEVSWNAMITGFSQHGYAL--------EAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGL-- 712 (968)
Q Consensus 647 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~-- 712 (968)
++++.++++.+. .+|..+|+--...+.+.|..+ ++++.++++++ ..| |...|........+.|.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccc
Confidence 889999999887 457778887666666656555 89999999999 567 45578887777777775
Q ss_pred -----HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh--------------------HHHHHHHHhCC-C----
Q 040643 713 -----VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL--------------------SRAREFTEQMP-I---- 761 (968)
Q Consensus 713 -----~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~--------------------~eA~~~~~~m~-~---- 761 (968)
+++++++++.+... .|+ ...+.-+-.++.+.|+- .+..++..++. .
T Consensus 219 ~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 78899998877643 565 45555566667666653 45556666652 1
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-ccCCCCcchHHHHHH
Q 040643 762 ---EPDAMVWRTLLSACRVHKNMEIGEYAANHLL-ELEPEDSATYVLLSN 807 (968)
Q Consensus 762 ---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~l~p~~~~~~~~l~~ 807 (968)
.+....+.-|+..+...|+.+.|..+.+.+. +.||-...++...+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2568888888889999999999999999987 789987777765544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00021 Score=61.92 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=63.6
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN---HVTFVGV 703 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~l 703 (968)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+ ..|+ ...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHH
Confidence 34455666666777777777777776654 33566677777777777777777777777776 4454 3456666
Q ss_pred HHHHccc-CcHHHHHHHHHHhhhh
Q 040643 704 LSACSHV-GLVNEGLRYFESMSTE 726 (968)
Q Consensus 704 l~a~~~~-g~~~~a~~~~~~m~~~ 726 (968)
..++.+. |++++|.++|+.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6677777 7777777777766543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.8e-05 Score=70.10 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=60.1
Q ss_pred hcCChHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 745 RAGCLSRAREFTEQM-PI---EPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 745 r~G~~~eA~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
..|++++|.+.+++. .. .|+ ..+|..|...+...|+++.|...++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777765 34 354 5677777777888888888888888888888888888888888888889988888
Q ss_pred HHHHHH
Q 040643 820 QIRQIM 825 (968)
Q Consensus 820 ~~~~~m 825 (968)
...+..
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 865544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.73 E-value=7.2e-05 Score=68.13 Aligned_cols=101 Identities=8% Similarity=-0.064 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHH
Q 040643 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYAC 738 (968)
Q Consensus 660 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~ 738 (968)
.+...|..+...+...|++++|+..|++.++ ..|+ ...+..+..++...|++++|..+|+...+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------- 71 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE------------- 71 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------
Confidence 3455666666666666666666666666665 3444 33455555555555555555555554432
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 739 VVDLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
..|+ ..+|..+...+...|+.+.|...++++++++|+
T Consensus 72 ----------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 72 ----------------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ----------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2232 556666666666777777777777777777776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.71 E-value=7.6e-05 Score=66.49 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=33.8
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
..|..+..++.+.|++++|.+.+++. .+.|+ ...|..|..++...|+.+.|...++++++++|+++
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 33444444444444444444444443 23443 55566666666677777777777777777777654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0001 Score=79.35 Aligned_cols=122 Identities=12% Similarity=-0.021 Sum_probs=88.1
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMP--EK-N---------------EVSWNAMITGFSQHGYALEAINLFEKMKKHDV 693 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 693 (968)
..+..+...|.+.|++++|...|++.. .| + ...|+.+...|...|++++|+..|++.++ +
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--L 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 344555566666677777766666544 22 2 47888888999999999999999999988 6
Q ss_pred CCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHH-HHHHh
Q 040643 694 MPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAR-EFTEQ 758 (968)
Q Consensus 694 ~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~-~~~~~ 758 (968)
.|+ ...+..+..++...|++++|...|+...+. .|+ ...+..+..++.+.|+.++|. +++++
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 675 457888888888888888888888877543 454 556677777777777777774 34433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00016 Score=64.83 Aligned_cols=93 Identities=9% Similarity=0.048 Sum_probs=71.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------cchHHHH
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPED-------SATYVLL 805 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l 805 (968)
.|..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++++++.|++ +..+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4555666677777777777777665 2333 46677777777888888888888888888888876 7788999
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 040643 806 SNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 806 ~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+.+|...|++++|.+..+...+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999988766554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.68 E-value=7.9e-05 Score=68.65 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-------CCCCcchH----HHHHHHHhhcCCcchHHHHHHHHH
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLEL-------EPEDSATY----VLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+..|..+..++...|+++.|...+++++++ +|+++..| ..++.+|...|++++|....+...
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 348888888889999999999999999999 99999999 999999999999999999766543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0001 Score=80.22 Aligned_cols=137 Identities=12% Similarity=0.042 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv 740 (968)
...|..+...|...|++++|++.|++.++ +.|+.. ..-..+++. .+.|. ...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 44688888888899999999999988876 222110 000011110 12232 45677888
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchH
Q 040643 741 DLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 818 (968)
.+|.+.|++++|.+.+++. .+.|+ ...|..+..++...|+++.|...++++++++|++...+..|+.++...|+.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888876 66665 778888888899999999999999999999999999999999999999888877
Q ss_pred HH
Q 040643 819 DQ 820 (968)
Q Consensus 819 ~~ 820 (968)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0014 Score=68.91 Aligned_cols=208 Identities=12% Similarity=0.035 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCC----------HHHHHHHHhcCC---CCCHHHHHHHHHHHHhcC--C
Q 040643 613 KQGKQVHAMIIKTGYDSETEASNSLITLYAKCGS----------IDDAKREFLEMP---EKNEVSWNAMITGFSQHG--Y 677 (968)
Q Consensus 613 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~----------~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g--~ 677 (968)
++|......++... +-+..+|+.--..+...|. ++++...++.+. .++..+|+--...+...| .
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 35666666666533 2233444443333333222 678888888776 568889998888888888 4
Q ss_pred HHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCc-HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc--------
Q 040643 678 ALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGL-VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA-------- 746 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~-------- 746 (968)
+++++++++++.+ ..|. ...|..-.....+.|. +++++++++.+.+. .|+ ...|.-...++.+.
T Consensus 126 ~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 126 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC----
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhcccccc
Confidence 8999999999999 6674 5577777777778887 69999999998764 454 44455555555544
Q ss_pred ------CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 747 ------GCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH-----------KNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 747 ------G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
+.++++++++++. -..|+ ..+|.-+-+..... +-++.+....+.+++++|++.-.+..++-
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 5688999998887 45565 88997666665443 34788999999999999998544433332
Q ss_pred HHh---hcCCcchHHHHHHHHH
Q 040643 808 IYA---AAGKWDCRDQIRQIMK 826 (968)
Q Consensus 808 ~y~---~~g~~~~a~~~~~~m~ 826 (968)
+.. ..|..+++......++
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHHHH
Confidence 221 2344445544444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=7.4e-05 Score=80.44 Aligned_cols=146 Identities=10% Similarity=-0.032 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
...|..+...+...|++++|+..|++.++ +.|+... +...|..+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34577788888889999999999999887 5676542 234455555544332 125777888
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh-hcCCcchH
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA-AAGKWDCR 818 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~~~a 818 (968)
+|.+.|++++|.+.+++. .+.|+ ...|..+..++...|+++.|...++++++++|++...+..|+.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888876 44554 7788888888889999999999999999999999999988888844 44566677
Q ss_pred HHHHHHHHh
Q 040643 819 DQIRQIMKD 827 (968)
Q Consensus 819 ~~~~~~m~~ 827 (968)
.++.+.|-+
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666666543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00027 Score=69.27 Aligned_cols=92 Identities=8% Similarity=-0.067 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----CCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM----PIEPD--------------AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+..+...+.+.|++++|.+.+++. |-.|+ ..+|..+..++...|+++.|...++++++++|+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 444455555556666665555543 22221 367888888899999999999999999999999
Q ss_pred CcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 798 DSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 798 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
++.++..++.+|...|++++|.+..+...+
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999997665543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00018 Score=67.25 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHcccCcHHHHHHHHHHhh
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVM-PNH----VTFVGVLSACSHVGLVNEGLRYFESMS 724 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~ 724 (968)
+|..+...|...|++++|+..|++.++..-. ++. .++..+...+...|++++|.++|+...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666677777777777666542100 111 245555555666666666666665543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00011 Score=65.83 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|..+|+...+.. |+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-------- 70 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE-------- 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc--------
Confidence 34677777788888888888888888877 3454 4456666667777777777777776654331 11
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
..++ ..+|..+...+...|+++.|....++++++.| ++.....+..++.
T Consensus 71 --------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 --------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp --------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred --------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0111 34455555556666667777777777777766 4555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=7e-05 Score=65.21 Aligned_cols=88 Identities=14% Similarity=-0.003 Sum_probs=72.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchHHH
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATYVL 804 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~ 804 (968)
.+.+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345666777788888888888887776 3445 47788888888999999999999999999999999 888899
Q ss_pred HHHHHhhcCCcchHHH
Q 040643 805 LSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 805 l~~~y~~~g~~~~a~~ 820 (968)
++.+|...|++++|.+
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 9999999998887754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00018 Score=80.60 Aligned_cols=159 Identities=5% Similarity=-0.126 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhc---CCCCC-cc
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKH-DVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEY---GLVPK-PE 734 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p~-~~ 734 (968)
++..+...|...|++++|++.+.++... +..++.. ....+...+...|..+++..+++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3566778888888888888888877652 1112221 22333344556788888888877654321 22222 44
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------c
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-----P--IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED-------S 799 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~ 799 (968)
.+..++.+|...|++++|.+++++. . -.|. ..++..+...|...||++.|....++++.+.|.. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6677888888889999988888765 1 1222 5567777777889999999999988888764322 2
Q ss_pred chHHHHHHHHhhcCCcchHHHHH
Q 040643 800 ATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 800 ~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
..+..++.+|...|+|++|.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667788889999999987743
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00046 Score=61.83 Aligned_cols=108 Identities=13% Similarity=0.045 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
.+...+...|++++|++.|++..+ ..|+.. .+..+..++...|++++|..+|+...+. .|+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~---------- 71 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPT---------- 71 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCC----------
Confidence 344555566666666666666665 334322 4444444555555555555555544332 121
Q ss_pred HhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 743 LGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
.|. ..+|..+...+...|+.+.|....+++++..|+++.....+..+
T Consensus 72 -------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 72 -------------------HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp -------------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred -------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 111 34444555556667777777777777777777766555444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00019 Score=67.13 Aligned_cols=128 Identities=15% Similarity=0.061 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----H
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----A 765 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~ 765 (968)
.++..+...+...|++++|..+|+...+...-.++ ...+..+..++...|++++|.+.+++. +-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35777888899999999999999987554221222 246888999999999999999998875 11122 5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------CcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPE------DSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.++..+...+...|+.+.|...+++++++.+. .+..+..++.+|...|++++|.+..+..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56777777789999999999999999987432 2457889999999999999999875544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=77.88 Aligned_cols=461 Identities=12% Similarity=0.086 Sum_probs=276.1
Q ss_pred cccchhhHHhhhhCCCcchHHHhhhccCCCCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcC
Q 040643 45 QVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGS 124 (968)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 124 (968)
..+|+.|-.++.+.|+..+|+..|- +..|+..|..+|.+..+.|.+++.+..+...++..-.|. .=+.++-++++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhh
Confidence 4578888888888888888888774 445556688888888889999988888776665544343 334677788887
Q ss_pred CCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHH
Q 040643 125 GNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQ 204 (968)
Q Consensus 125 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 204 (968)
+.+. ..+.+. -.||..-...+-+-+-..|.++.|.-+|..++. |.-|...+.+-|++.+|.+.-++
T Consensus 130 ~rL~--elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 130 NRLA--ELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp CSSS--TTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT
T ss_pred CcHH--HHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766 322211 134554555666666777777777777776643 44555666777777777654332
Q ss_pred HHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCC---CCCcc
Q 040643 205 MHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ---QRDGV 281 (968)
Q Consensus 205 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~ 281 (968)
.-++.||-.+-.+|...+.+..|...--.++-. + .-...|+..|-+.|.+++-..+|+.-. ....-
T Consensus 196 ------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 ------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp ------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred ------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 235678999999999998888765543333321 2 223456788999999999888888654 23555
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHH
Q 040643 282 TYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYV 361 (968)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 361 (968)
.++-|.-.|++- ++++-.+.++..- +..-...+|++|....- |.-++-.|.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~------sriNipKviracE~ahL----------------------W~ElvfLY~ 315 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFW------SRVNIPKVLRAAEQAHL----------------------WAELVFLYD 315 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSS------SSSCCTTTHHHHTTTTC----------------------HHHHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHH------HhccHHHHHHHHHHHhh----------------------HHHHHHHHh
Confidence 677777777765 5666555544321 12223456777765444 455566666
Q ss_pred hcCChhHHHHH--------Hhh-----CC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhh
Q 040643 362 KCSDVETAYKF--------FLT-----TE--TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTC 426 (968)
Q Consensus 362 ~~g~~~~A~~~--------f~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 426 (968)
+-.++|.|... |+. +. -.|+..|-..|.-|.+. .+.-++-+|.++
T Consensus 316 ~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e--------------------~P~lL~DLL~vL 375 (624)
T 3lvg_A 316 KYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--------------------KPLLLNDLLMVL 375 (624)
T ss_dssp HHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS--------------------CCTTSHHHHHHH
T ss_pred cchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh--------------------ChHHHHHHHHhc
Confidence 77777766432 111 11 13455555555555433 223355666666
Q ss_pred ccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHH-HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHh
Q 040643 427 TSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWT-AMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISAC 505 (968)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 505 (968)
...=+.....+++...+++......+......|...-| ++-..|....+++.- +.-++.--.-|...+
T Consensus 376 ~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L----R~SId~ydNFD~i~L------- 444 (624)
T 3lvg_A 376 SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL----RTSIDAYDNFDNISL------- 444 (624)
T ss_dssp CTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH----HHTTSSCCCSCTTHH-------
T ss_pred cccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH----HHHHHHhccccHHHH-------
Confidence 66666677777788888887777777776666655444 555666666665531 222221112222222
Q ss_pred hcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHH
Q 040643 506 AGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFS 585 (968)
Q Consensus 506 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 585 (968)
|.++-. ..-...-..-...|.+.++++++..+..+= -.|---|..-+.+|+.+-|.++++
T Consensus 445 --------A~rLEk-------HeL~eFRrIAA~LYkkn~rw~qsi~l~KkD-----klykDAietAa~S~~~elaeeLL~ 504 (624)
T 3lvg_A 445 --------AQRLEK-------HELIEFRRIAAYLFKGNNRWKQSVELCKKD-----SLYKDAMQYASESKDTELAEELLQ 504 (624)
T ss_dssp --------HHHHHT-------CSSHHHHHHHHHHHHTTCHHHHHSSCSSTT-----CCTTGGGTTTTTCCCTTHHHHHHH
T ss_pred --------HHHHhh-------CchHHHHHHHHHHHHhcccHHHHHHHHHhc-----ccHHHHHHHHHHcCCHHHHHHHHH
Confidence 221111 001111123345677778888776654321 123333444566777777777777
Q ss_pred HhhhcCCcCCcchHHHHHHHHhhhhhHHHHHH
Q 040643 586 QMTQVGVQANLYTFGSVVSAAANLANIKQGKQ 617 (968)
Q Consensus 586 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 617 (968)
-..+.| +...|...|-.|..+=+.+.+.+
T Consensus 505 yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 505 WFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 776654 34457777777777655554444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.54 E-value=5.3e-05 Score=67.03 Aligned_cols=75 Identities=11% Similarity=0.006 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
+..+..+|.+.|++++|.+.+++. ...|+ ..+|..+..++...|+.+.|...+++++++.|+++........+..
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 333444444444444444444443 22333 5555566666667777777777777777777777655444433333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00031 Score=66.21 Aligned_cols=123 Identities=15% Similarity=0.042 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cc
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKH------DVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PE 734 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~ 734 (968)
...|......+.+.|++++|+..|++.++. .-.|+...+ . .+.|. ..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~---------~~~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------V---------ELDRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------H---------HHHHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------H---------HHHHHHHH
Confidence 345677778888888888888888887762 001211100 0 00111 34
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-chHHHHHHHHh
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS-ATYVLLSNIYA 810 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 810 (968)
.|..+..+|.+.|++++|...+++. .+.|+ ...|..+..++...|+++.|...++++++++|+++ .....|..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 5666667777777777777776665 44554 67788888888899999999999999999999988 55666655443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00015 Score=81.55 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=75.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHh
Q 040643 672 FSQHGYALEAINLFEKMKKH---DVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLG 744 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~---g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 744 (968)
+...|++++|+.++++.++. -+-|++. +++.|..+|...|++++|..++++....+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~----------------- 381 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY----------------- 381 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----------------
Confidence 44566666666666665531 1234321 34555555555555555555555432211
Q ss_pred hcCChHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCcch---HHHHHHHHhhcC
Q 040643 745 RAGCLSRAREFTEQM--PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLE-----LEPEDSAT---YVLLSNIYAAAG 813 (968)
Q Consensus 745 r~G~~~eA~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~~~---~~~l~~~y~~~g 813 (968)
++. |-.|+ +.+++.|...+...|+++.|+...+++++ +.|+++.+ +..|...+...|
T Consensus 382 ------------~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 382 ------------MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp ------------HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 010 23333 44555555556666666666666666555 35666544 456778899999
Q ss_pred CcchHHHHHHHHHhCCCc
Q 040643 814 KWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 814 ~~~~a~~~~~~m~~~g~~ 831 (968)
++++|..+++.++++-.+
T Consensus 450 ~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 450 MFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999998888875533
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00015 Score=77.93 Aligned_cols=110 Identities=9% Similarity=-0.051 Sum_probs=87.4
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVH 778 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 778 (968)
.+..+...+...|++++|...|+..... .|+.. .+...|+.+++...+.. .+|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 4566777889999999999999987543 34321 23345556666554432 3778888889999
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
|+++.|...++++++++|++..+|..++.+|...|+|++|....+..
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00026 Score=58.83 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=63.2
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344555666677777777777776665 3344 36778888888889999999999999999999999999999999987
Q ss_pred hcC
Q 040643 811 AAG 813 (968)
Q Consensus 811 ~~g 813 (968)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00036 Score=75.92 Aligned_cols=111 Identities=5% Similarity=-0.035 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACR 776 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~ 776 (968)
..+..+...+...|++++|.+.|++..+.. |. ....-..+++. ...|. ..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 346666777777788888877777664321 00 00000111111 12343 678888888899
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..|+++.|...++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00081 Score=75.14 Aligned_cols=157 Identities=10% Similarity=-0.010 Sum_probs=117.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNH----------------VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP 733 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 733 (968)
..+...|++++|++.|.+.++..-.... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456789999999999998874211111 136778899999999999999999886654433332
Q ss_pred ----chHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc------C
Q 040643 734 ----EHYACVVDLLGRAGCLSRAREFTEQM-------PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLEL------E 795 (968)
Q Consensus 734 ----~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------~ 795 (968)
.....+..++...|++++|.++++.. ...+. ..++..|...+...|+++.|....+.++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22344555666789999999888765 23333 677888888899999999999999988775 2
Q ss_pred CCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 796 PEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 796 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
|.....|..++.+|...|+|++|....+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3345688999999999999999998755443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00059 Score=58.14 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 764 DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 764 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
++.+|..+...+...|+++.|+..++++++++|+++.+|..|+.+|...|++++|.+..+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477888898899999999999999999999999999999999999999999999998765543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0011 Score=74.60 Aligned_cols=63 Identities=5% Similarity=-0.005 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|+|++|....+...+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888888899999999999999999999999999999999999999999999998776654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0009 Score=55.89 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 762 EPDAMVWRTLLSACRVHKN---MEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 762 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
.+|+.+|..+..+....++ .+.|...++++++++|+++.+..+|++++...|+|++|...++.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3457888888888755554 7999999999999999999999999999999999999999999987754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00046 Score=60.57 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=63.5
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 751 RAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 751 eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+|.+.+++. ...|+ ...|..+...+...|+++.|+..++++++++|+++..|..++.+|...|++++|....+...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555544 44554 778888888899999999999999999999999999999999999999999999997665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00041 Score=60.15 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-------
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK------- 732 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~------- 732 (968)
+...|..+...+...|++++|++.|++.++ +.|+ ...+..+..++...|++++|...|+... .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHH
Confidence 455677788888888888888888888887 5665 5567777788888888888888888765 34555
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
...+..+..++...|+.++|.+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 334555566666666666666655555
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00021 Score=65.65 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=62.1
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 744 GRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKN----------MEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 744 ~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
.|.+++++|.+.+++. ...|+ +..|..+..++...++ ++.|+..++++++++|+++.+|..|+++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4556666676666655 34443 5555555555554443 5699999999999999999999999999998
Q ss_pred cC-----------CcchHHHHHHHHHh
Q 040643 812 AG-----------KWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g-----------~~~~a~~~~~~m~~ 827 (968)
.| ++++|.+..++.-+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH
Confidence 85 89999997665544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00073 Score=75.88 Aligned_cols=92 Identities=7% Similarity=-0.074 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-----CCCC---cchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcc
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLEL-----EPED---SATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQ 836 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~ 836 (968)
..+++.|..+|...|+++.|+...++++++ .|++ +..|..|+.+|..+|+|++|..+.+...+-- ++
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~-~~---- 425 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL-LV---- 425 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HH----
Confidence 455666666667777777777666666654 4444 4577889999999999999999755443210 01
Q ss_pred cEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 040643 837 SWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAE 874 (968)
Q Consensus 837 s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 874 (968)
+- ...||...++..+|.+...+++.
T Consensus 426 ------------~l-G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 426 ------------TH-GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ------------HT-CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------Hh-CCCChHHHHHHHHHHHHHHHHHH
Confidence 11 24799999999998888776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0092 Score=62.94 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC
Q 040643 659 EKNEVSWNAMITGFS--QHG---YALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK 732 (968)
Q Consensus 659 ~~d~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~ 732 (968)
..|...|...+.|.. ..+ ...+|+.+|++.++ ..|+. ..+..+..++.. +.. ++ |.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~~~----~~--~~ 252 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------RHS----QH--PL 252 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------HHH----HS--CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------Hhc----cC--CC
Confidence 346667777666543 333 35789999999999 88985 355555444430 000 01 11
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
... +.-.+.+|.+-...++..| ++.+|.++.-.....|+++.|...++++++++| +...|++++.+|.-
T Consensus 253 ~~~---------~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEK---------QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp CHH---------HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred chh---------hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 000 0001122333223333233 355666655555556777777777777777775 35566677777777
Q ss_pred cCCcchHHHHH
Q 040643 812 AGKWDCRDQIR 822 (968)
Q Consensus 812 ~g~~~~a~~~~ 822 (968)
.|++++|.+..
T Consensus 323 ~G~~~eA~e~~ 333 (372)
T 3ly7_A 323 KGMNREAADAY 333 (372)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 77777776643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00048 Score=63.24 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=65.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHH----------HHHHHHHHhhhhcCCCCC-cchHHHHH
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVN----------EGLRYFESMSTEYGLVPK-PEHYACVV 740 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~----------~a~~~~~~m~~~~~i~p~-~~~y~~lv 740 (968)
.+.+.+++|++.+++..+ +.|+ ...+..+..++...|.++ +|+..|++.. .+.|+ .+.|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHH
Confidence 456678888888888888 6775 456777777777776543 4444444432 22443 33444444
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
.+|...|++ .|+... ..|+++.|...++++++++|++..+...
T Consensus 88 ~ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 444443332 232110 1258999999999999999988644433
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00052 Score=75.92 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-----CCCC---cchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcc
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLEL-----EPED---SATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQ 836 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~ 836 (968)
..+++.|..+|...|+++.|+...++++++ .|++ +..|..|+.+|..+|++++|..+.+...+- .++
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i-~~~---- 403 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI-MRV---- 403 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH----
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHH----
Confidence 445566666666667777666666666653 3444 456778999999999999999865544321 001
Q ss_pred cEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Q 040643 837 SWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVA 873 (968)
Q Consensus 837 s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 873 (968)
+-...||...+++..|++...+|+
T Consensus 404 -------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 -------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp -------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 113479999999999999888776
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0011 Score=70.96 Aligned_cols=427 Identities=11% Similarity=0.128 Sum_probs=222.8
Q ss_pred CccchhHHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcc
Q 040643 147 SPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTK 226 (968)
Q Consensus 147 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 226 (968)
.+.+|+.|..++.+.|...+|...| +...|...|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 3456666666666666666665554 233344455666666666666666666554444332222 222344445555
Q ss_pred cCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHh
Q 040643 227 IELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKM 306 (968)
Q Consensus 227 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 306 (968)
.+++.+-+.+.. .|++.-....-+-+...|.++.|.-+|..+. -|.-|.+.+.+-|++..|.+.-++
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 544433322221 2333333333444444444444444444332 233333334444444444433221
Q ss_pred hccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCC---CCCcch
Q 040643 307 QLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTE---TENVVL 383 (968)
Q Consensus 307 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~ 383 (968)
.-+..||--+-.+|...+.+..|...--.++-.. .-...|+..|-..|.+++-+.+++.-. ......
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 2356678888888888877776655433333221 123345667777788887777776533 345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHH-----------
Q 040643 384 WNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEIL----------- 452 (968)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~----------- 452 (968)
|+-|.-.|++-. +++.++-++ .--+..-...+|++|....-|.++.-+|.+...++.|....
T Consensus 266 FTELaILYsKY~-PeKlmEHlk------lf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~ 338 (624)
T 3lvg_A 266 FTELAILYSKFK-PQKMREHLE------LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG 338 (624)
T ss_dssp HHHHHHHHHSSC-TTHHHHHHT------TSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGG
T ss_pred HHHHHHHHHhcC-HHHHHHHHH------HHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHH
Confidence 777777776653 333222222 22234445567888888888888888888777777664332
Q ss_pred --hhCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCC
Q 040643 453 --RRLP--EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSD 528 (968)
Q Consensus 453 --~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 528 (968)
.... ..|+..|-.-|.-|.+.. +..--+++.-+.. .+.++ .+++-..+.+++...+..+..+... .
T Consensus 339 ~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~p-rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~---N 408 (624)
T 3lvg_A 339 QFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSP-RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNH---N 408 (624)
T ss_dssp GGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCT-TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCS---C
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhccc-cCChH-----HHHHHHHhcCCchhhHHHHHHHHHh---h
Confidence 1111 135555555555555432 2222233333211 11111 2334445566666666555444332 2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCccc------------HHHH-HHHHHhcCChhhHHHHHHHhhhcCCcCC
Q 040643 529 DLSIGNALISLYARCGRIQEAYLVFNKIDAKDNIS------------WNGL-ISGFAQSGYCEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 529 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~------------~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~ 595 (968)
+..+-.++-+.|....+++.-+.-.+.-..-|.+. +..+ ..-|.++++|++++++.++ .
T Consensus 409 ~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---D----- 480 (624)
T 3lvg_A 409 NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---D----- 480 (624)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---T-----
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---c-----
Confidence 44566678888888888776655544333223222 2222 2345677778777765432 1
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTG 626 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 626 (968)
..|--.+...+..++.+.+..++...++.|
T Consensus 481 -klykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 481 -SLYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp -CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred -ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 112223344566777777888887777765
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0079 Score=69.21 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=110.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHH-HHHHHHHHcccCc----------HHHHHHHHHHhhhhcCCCCC-cchHHHHHHH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHVT-FVGVLSACSHVGL----------VNEGLRYFESMSTEYGLVPK-PEHYACVVDL 742 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~ 742 (968)
....++|++.++++++ +.|+..| |+.--.++.+.|. +++++++++.+.+. .|. ...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3456789999999999 8898654 6666666666666 99999999998764 555 5566667778
Q ss_pred HhhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 743 LGRAG--CLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHK-NMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 743 l~r~G--~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
+.+.| ++++|.++++++ ...| |..+|..--......| ..+.+....+++++.+|.|..+|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 88899 779999999998 5555 4899998888888888 889999999999999999999999999998885
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0024 Score=55.85 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
+...|..+...|...|++++|+..|++.++ ..|+ ...+..+..++...|++++|..+|+...+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556666666777777777777777777666 4554 34566666666667777777776665543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0048 Score=52.29 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
+...|..+...|...|++++|++.|++.++ ..|+ ...+..+..++...|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566778888888888888888888888887 5665 44677777788888888888888876643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0012 Score=72.68 Aligned_cols=85 Identities=8% Similarity=0.095 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-----CC---CCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcc
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLEL-----EP---EDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQ 836 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-----~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~ 836 (968)
..+++.|..+|...|+++.|+...++++++ .| +-+..|..|+.+|..+|++++|..+.+...+-- .+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~-~~---- 414 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM-EV---- 414 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HH----
Confidence 344445555555555555555555555543 33 344567888999999999999988655443210 01
Q ss_pred cEEEEcCEEEEEecCCCCCcchHHHHHHHHH
Q 040643 837 SWIEVKNSIHAFFVGDRLHPLADKIYDYLGN 867 (968)
Q Consensus 837 s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 867 (968)
+-...||...+++..|++
T Consensus 415 -------------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 415 -------------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp -------------HTCTTCHHHHHHHHHHHC
T ss_pred -------------HcCCCChHHHHHHHHHhc
Confidence 113469988888877653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0071 Score=54.91 Aligned_cols=111 Identities=11% Similarity=-0.062 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhh----cCChH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGR----AGCLS 750 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~G~~~ 750 (968)
.++.++|++.|++..+.| .|+.. |...+...+.+++|.++|++..+. -+...+..|..+|.+ .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346778888888888876 44433 666677777788888888876543 234445555555555 55666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHcc
Q 040643 751 RAREFTEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLEL 794 (968)
Q Consensus 751 eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l 794 (968)
+|.+++++.--.-++..+..|...+.. .+|.+.|....+++.++
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 666665554212233333333333333 34444555444444444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.012 Score=64.76 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=29.7
Q ss_pred hcCCHHHHHHHHHHHHH---CCCCCCh----HHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 674 QHGYALEAINLFEKMKK---HDVMPNH----VTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~---~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
..|++++|+.++++.++ .-+-|++ .+++.|..+|...|++++|..++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 45667777777776654 2234543 24555666666666666666666554
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.011 Score=48.46 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 567778888899999999999999999999999999999999999999999999997665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.012 Score=49.40 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=51.5
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AM-VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
.+..+.+.|++++|.+.+++. ...|+ .. .|..+...+...|+.+.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456677788888888888776 44554 56 777787788889999999999999999999988776
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.12 E-value=0.051 Score=49.09 Aligned_cols=108 Identities=7% Similarity=-0.074 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-EKNEVSWNAMITGFSQ----HGYALEAINL 684 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~l 684 (968)
.+.++|...+....+.| .++.. |..+|...+.+++|.+.|++.. ..++.+++.|...|.. .++.++|++.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 35566666666666655 22222 6666666667777777777654 4466677777777766 6777888888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHcc----cCcHHHHHHHHHHhhh
Q 040643 685 FEKMKKHDVMPNHVTFVGVLSACSH----VGLVNEGLRYFESMST 725 (968)
Q Consensus 685 ~~~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~ 725 (968)
|++..+.| +......|...+.. .++.++|.++|+...+
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 88777754 44455556566655 6777777777776643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.021 Score=60.24 Aligned_cols=70 Identities=21% Similarity=0.072 Sum_probs=46.1
Q ss_pred HHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEE--EEcCEEEEEecCCCCCcchHHHHHHHHH
Q 040643 790 HLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWI--EVKNSIHAFFVGDRLHPLADKIYDYLGN 867 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i--~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 867 (968)
..++++|.++..|..++.++...|++++|....++.-..+ | ||. ...|+++. ..|+ +.++.+.|..--+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~--s~~a~~llG~~~~-~~G~--~~eA~e~~~~Alr 338 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----M--SWLNYVLLGKVYE-MKGM--NREAADAYLTAFN 338 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----C--CHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----C--CHHHHHHHHHHHH-HCCC--HHHHHHHHHHHHh
Confidence 4557889999999999999999999999999766665543 3 232 23344432 3344 4556666555444
Q ss_pred H
Q 040643 868 L 868 (968)
Q Consensus 868 l 868 (968)
|
T Consensus 339 L 339 (372)
T 3ly7_A 339 L 339 (372)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.099 Score=63.46 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
....+|++++|.++.+.+. +...|..+...+.+.|+.+.|.+.|.++..
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 4456777777777766653 456777777777777777777777777643
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.024 Score=62.51 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhh
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKH---DVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMS 724 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~---g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~ 724 (968)
..+..+...|++++|++++++.++. -+.|++. ++..+..+|...|++++|..++++..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3355566778888888888888753 2345532 56667777777788888777777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.24 Score=59.98 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=81.3
Q ss_pred HHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChh
Q 040643 499 SSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCE 578 (968)
Q Consensus 499 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~ 578 (968)
..++..+.+.+..+.|.++.... ..-......+|++++|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 44445555555555555444211 122455678999999999987774 4578999999999999999
Q ss_pred hHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhc
Q 040643 579 GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLE 656 (968)
Q Consensus 579 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~ 656 (968)
.|.+.|.++.. |..+...+...++.+....+-..+...| -++.-...|.++|++++|.+++.+
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998764 2344444444666665555544444433 123334456667777777655433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.18 Score=45.54 Aligned_cols=94 Identities=16% Similarity=0.051 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC---cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 679 LEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG---LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
..+.+-|.+..+.|. |+..+-..+..++.++. ++++|..+|+...+.. .|+ .
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~-~--------------------- 69 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE-E--------------------- 69 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH-H---------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc-c---------------------
Confidence 455566666666553 56666666777777777 6778888888765431 121 0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 756 TEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 756 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
+...+-.|.-++.+.||++.|.+.++++++++|+|..+..+.
T Consensus 70 --------~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 70 --------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp --------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 122333555567888999999999999999999888776654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.028 Score=47.04 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=50.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCcc-hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEPEDSA-TYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...+...|+++.|...++++++++|+++. .+..++.+|...|++++|.+..+...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34567789999999999999999999999 999999999999999999997666544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.04 Score=55.59 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHccCCCC-cchHHHHHHHHhhc-CCcch
Q 040643 749 LSRAREFTEQM-PIEPD---AMVWRTLLSACRV-----HKNMEIGEYAANHLLELEPED-SATYVLLSNIYAAA-GKWDC 817 (968)
Q Consensus 749 ~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~ 817 (968)
+.+|...+++. .+.|+ ...|..|...|.. -|+.+.|+..+++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34444444444 44555 5566666666655 489999999999999999974 89999999988884 88898
Q ss_pred HHHHHHHHHhCCCccCCc
Q 040643 818 RDQIRQIMKDRGVKKEPG 835 (968)
Q Consensus 818 a~~~~~~m~~~g~~k~~g 835 (968)
+.+..+....-..+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 888766665555443344
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.50 E-value=1.5 Score=38.06 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=92.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHH
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSR 751 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~e 751 (968)
+...|..++..++..+..... +.--++-++--...+-+-+--.+.++++-+-|.+.|-.. .-.+|..|.+.|...|
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~N-lKrVi~C~~~~n~~se 92 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNTLNE 92 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTCCCH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhc-HHHHHHHHHHhcchHH
Confidence 345677778888877776521 222333333333334445555666666655555554321 2334555555554433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 752 AREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 752 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
-. ..-|.....+|..+.-+.+...++.-+|-++...+-+++.|.+.|.-.+|.++++..-++|++
T Consensus 93 ~v---------------d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HV---------------NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HH---------------HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HH---------------HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 22 334566677888888888888877778889999999999999999999999999999899985
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.13 Score=43.64 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=47.5
Q ss_pred HHHHHHhhcCChHHHHHHHHhC---------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM---------PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m---------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
.|+..+.+.|+++.|...++.. +-.+...++..|..++...|+++.|....+++++++|++..+...+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3444444445444444444432 01234778888888999999999999999999999999977654443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.6 Score=43.32 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=73.2
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 719 (968)
.-..+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|.-.|+.+.-.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345677777777776655 3566788888888888888888887777544 33444444555665544433
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040643 720 FESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHL 791 (968)
Q Consensus 720 ~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 791 (968)
-+....+ .-++.-...+.-.|+++++.+++.+...-|.+.. ..+.+|--+.|+++.+.+
T Consensus 83 a~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 3222111 1133333444556777777777666543332221 134566666666665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.16 Score=41.93 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHhhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 731 PKPEHYACVVDLLGRAGC---LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 731 p~~~~y~~lv~~l~r~G~---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
++++.+..+..++...+. .++|..++++. ...|+ ...+..|...+...|+++.|....+++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 345666777776654444 57788777776 56666 5555555566788888888888888888888873
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.24 Score=44.82 Aligned_cols=90 Identities=11% Similarity=0.023 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccC-C-CCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCccc
Q 040643 763 PDAMVWRTLLSACRVHK---NMEIGEYAANHLLELE-P-EDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQS 837 (968)
Q Consensus 763 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 837 (968)
++..+.-.+..+....+ ++++|....+.+++.+ | ++...++.|+-.|++.|++++|.+..+..-+. +
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i----e---- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----E---- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----C----
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----C----
Confidence 56677777777776666 6779999999999999 7 56889999999999999999999987766542 2
Q ss_pred EEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 040643 838 WIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYV 878 (968)
Q Consensus 838 ~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~ 878 (968)
|...+.....+.+..++++.|.+
T Consensus 102 ------------------P~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 102 ------------------PQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHhhHH
Confidence 43444445556666778887764
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.87 Score=45.97 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHhcCCCCC--HHHHHHHHHH-HHhc--C------CHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHcc
Q 040643 644 CGSIDDAKREFLEMPEKN--EVSWNAMITG-FSQH--G------YALEAINLFEKMKKHDVMPN---HVTFVGVLSACSH 709 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~~~d--~~~~~~li~~-~~~~--g------~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~ 709 (968)
.|+..+-.+.+.+..+.| ...|..++.+ ++.. | ...+|..++++.++ +.|+ ...+..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 344445555566665443 4578777764 3332 3 35678888888888 7887 3467777777777
Q ss_pred -----cCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhc-CChHHHHHHHHhC
Q 040643 710 -----VGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRA-GCLSRAREFTEQM 759 (968)
Q Consensus 710 -----~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~-G~~~eA~~~~~~m 759 (968)
-|+.++|.++|++.. .+.|+ +.++....+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 488899998888775 34673 77777788888774 7788887777765
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=19 Score=41.08 Aligned_cols=262 Identities=9% Similarity=0.049 Sum_probs=140.9
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhh
Q 040643 531 SIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLA 610 (968)
Q Consensus 531 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 610 (968)
.+-+.-+..+.+.+++.....++.. +..+...--....+....|+..+|....+++-..| .........++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3334556677788888888886666 33344333445666777788888888777777665 233445566666666554
Q ss_pred hHHHH--HHHHHHHHHhC-----------CCCCh-hHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHH---HHHHHHHHHH
Q 040643 611 NIKQG--KQVHAMIIKTG-----------YDSET-EASNSLITLYAKCGSIDDAKREFLEMPEKNEV---SWNAMITGFS 673 (968)
Q Consensus 611 ~~~~a--~~~~~~~~~~g-----------~~~~~-~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~ 673 (968)
.+... .+=...+...| ++++. ....+++..+.+ ...+....... .++.. ....-+.-++
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 33221 11112222211 11111 122233332222 22222222221 11211 1111222333
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChH
Q 040643 674 QHGYALEAINLFEKMKKHD-VMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g-~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~ 750 (968)
+ .+.+.|..+|....+.+ +.+... ....+.......+...++..++...... .++.....-.+....|.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 3 38899999999887543 322222 2233333445555466777777765332 233223334444555889999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHH-HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 751 RAREFTEQMPIEP-DAMVWRTLL-SACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 751 eA~~~~~~m~~~p-~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
.|...|+.|+-.+ +..-|.--+ .+....|+.+.|....+++.+ + .+.|-.|+
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 9999999997554 323333222 245678999999999999875 3 35666553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.19 E-value=1 Score=52.56 Aligned_cols=52 Identities=12% Similarity=-0.000 Sum_probs=48.7
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
-|...|++++|..+|+++...-|.+-.+|..|+.+|...|+|+.|.-....+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3678899999999999999999999999999999999999999999887766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.10 E-value=6.6 Score=36.38 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHH
Q 040643 537 ISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGK 616 (968)
Q Consensus 537 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 616 (968)
.+.-.++|+++.|.++.+.+ .+...|..+.....+.|+++-|.+.|.+... +..++--+...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556789999998888776 4566899999999999999999998888754 233444445556655555
Q ss_pred HHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC
Q 040643 617 QVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP 658 (968)
Q Consensus 617 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 658 (968)
.+-......| -+|.-...+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4444444433 11222333444566666666665544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.84 E-value=2.9 Score=36.26 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHH---HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 679 LEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNE---GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
..+.+-|.+....|. |+..|-..+..++.|+..... |+.+++...+. + .|. .-
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~------------------~~--- 73 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKE------------------EQ--- 73 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHH------------------HH---
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc------------------hH---
Confidence 344455555555443 666666667777888776555 77777766432 0 120 00
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 756 TEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 756 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
-...-.|.-++.+.|+++.|.+..+.+++.+|+|..+..+.
T Consensus 74 ---------Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 74 ---------RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 01112345568888999999999999999999888766654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=88.05 E-value=1.1 Score=37.74 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=30.4
Q ss_pred HHHHHHcccCcHHHHHHHHHHhhhhcCC-----CCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 040643 702 GVLSACSHVGLVNEGLRYFESMSTEYGL-----VPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD 764 (968)
Q Consensus 702 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i-----~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~ 764 (968)
.+...+...|+++.|..+|+...+...- .+....|..++.++.+.|++++|..++++. .+.|+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3444444444444444444443332210 112344555566666666666666666655 34454
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.77 E-value=14 Score=32.53 Aligned_cols=73 Identities=8% Similarity=-0.029 Sum_probs=34.4
Q ss_pred CCCcchHHHHHHHHhhcCChH---HHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 730 VPKPEHYACVVDLLGRAGCLS---RAREFTEQM-PIEP-DAM-VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 730 ~p~~~~y~~lv~~l~r~G~~~---eA~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
.|+.++--....+|.++.+.+ ++..++++. .-.| +.. ..--|.-++.+.||++.|.+..+.+++.+|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 355555445555555555433 344444443 1122 111 111233345555666666666666666666554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=83.15 E-value=23 Score=30.93 Aligned_cols=136 Identities=10% Similarity=0.053 Sum_probs=79.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhh---hhHHHHHHHcCCHH
Q 040643 471 VQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIG---NALISLYARCGRIQ 547 (968)
Q Consensus 471 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~---~~Li~~y~k~g~~~ 547 (968)
.-.|..++..++..+..... +..-++.+|--....-+-+...++++. -|-..|.... ..++..|++.|.
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~---IGkiFDis~C~NlKrVi~C~~~~n~-- 89 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDK---IGSYFDLDKCQNLKSVVECGVINNT-- 89 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHH---HGGGSCGGGCSCTHHHHHHHHHTTC--
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHH---HhhhcCcHhhhcHHHHHHHHHHhcc--
Confidence 34577888888888876542 222333333332222232333333322 2222232211 234444444443
Q ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Q 040643 548 EAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGY 627 (968)
Q Consensus 548 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 627 (968)
+..-.+.-++.....|+-++--++..++.. +.+|+......+.+|+.+.|+..++.+++..+-+.|+
T Consensus 90 ------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 ------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 222334456777888888888888888644 3467777777888888999999888888888888774
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.69 E-value=8 Score=31.67 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=51.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 752 AREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 752 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
++.-+-.+.+.|++.+..+-|.|||.-+|+..|.+..+-+-..-.+....|-.+. .+++-.+.+-|+.
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l------------qElkPtl~ELGI~ 99 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGIS 99 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH------------HHHhhHHHHhCCC
Confidence 3333444578999999999999999999999999999988776655555555442 4667777777764
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.43 E-value=48 Score=34.17 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=50.9
Q ss_pred HHHHhcCCCCChhhHHHHHHHhhcccch-----hhhhhhhHhhhhhc--CCCCchhhhhHHHHHHHcCCHHHHHHHHHhC
Q 040643 484 EEMENQGIQSDNIGFSSAISACAGIQAL-----NQGRQIHAQSYISG--FSDDLSIGNALISLYARCGRIQEAYLVFNKI 556 (968)
Q Consensus 484 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~-----~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 556 (968)
+-..+.++++|..+...++..+.....- .-..+...+..+.| ..-|+.+...+...|.+.+++.+|+.-|---
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg 162 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG 162 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 4444556666666665555555443321 11222333333433 3446777788889999999999999888432
Q ss_pred CCCCcccHHHHHHHHHhcC
Q 040643 557 DAKDNISWNGLISGFAQSG 575 (968)
Q Consensus 557 ~~~d~~~~~~li~~~~~~g 575 (968)
..+....+..|+.-+.+.+
T Consensus 163 ~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTS
T ss_pred CCchHHHHHHHHHHHHHhc
Confidence 2222245544544444433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.87 E-value=8.2 Score=45.06 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
.-+...|+++-|+++.++... ..|+. .||..|...|.+.|+++.|+-.++++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345567899999999999988 78875 58999999999999999999999887
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 968 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 4e-06
Identities = 44/399 (11%), Positives = 104/399 (26%), Gaps = 27/399 (6%)
Query: 430 GALSLGEQIHTQLGNLNTAQEILRRLPE---DDVVSWTAMIVGFVQHGMFGEALELFEEM 486
G + L + Q G+ A+ +L D+ + Q +
Sbjct: 1 GPMELAHR-EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA 59
Query: 487 ENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRI 546
Q N + A S + Q+ + L + +
Sbjct: 60 IKQ-----NPLLAEAYSNLG--NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALV 112
Query: 547 QEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAA 606
+ + +N + + + + T + A
Sbjct: 113 AAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAW 172
Query: 607 ANLANIKQGKQVHAMIIKTGYDSET------EASNSLITLYAKCGSIDDAKREFLEMPEK 660
+NL + + + I + T +A +L + + D A +L
Sbjct: 173 SNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
Query: 661 NEV---SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVL-SACSHVGLVNEG 716
+ + + + G AI+ + + + P+ L +A G V E
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEA 290
Query: 717 LRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ-MPIEPD-AMVWRTLLSA 774
+ + + + ++ G + A + + + P+ A L S
Sbjct: 291 EDCYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 775 CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813
+ ++ + + P + Y + N
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 968 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.83 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.39 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.77 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.77 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.76 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.75 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.69 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.66 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.65 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.64 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.57 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.54 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.44 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.37 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.24 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.14 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.12 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.11 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.04 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.02 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.0 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.99 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.95 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.92 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.87 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.75 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.73 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.67 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.64 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.61 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.57 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.54 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.54 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.47 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.36 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.27 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.13 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.09 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.07 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.93 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.84 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 96.78 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.63 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.53 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.22 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 95.16 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.17 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.82 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 86.72 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 86.39 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 85.04 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 85.01 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 84.37 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 81.77 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=5.7e-18 Score=185.87 Aligned_cols=372 Identities=11% Similarity=0.072 Sum_probs=268.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHH
Q 040643 388 LVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMI 467 (968)
Q Consensus 388 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 467 (968)
...+.+.|++++|++.|+++.+.. |+ +...|..+.
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~--p~-------------------------------------------~~~~~~~la 40 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE--PD-------------------------------------------NTGVLLLLS 40 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TT-------------------------------------------CHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CC-------------------------------------------CHHHHHHHH
Confidence 345567788888888888776542 32 333455556
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCH
Q 040643 468 VGFVQHGMFGEALELFEEMENQGIQS-DNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRI 546 (968)
Q Consensus 468 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 546 (968)
..|.+.|++++|+..|++..+. .| +..++..+...+...|+++.|.+.+....+...... .........+...+..
T Consensus 41 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 117 (388)
T d1w3ba_ 41 SIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI-DGYINLAAALVAAGDM 117 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHSCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhccccccccccccccccccccc-cccccccccccccccc
Confidence 6666666666666666666553 23 234455555556666666666666666555443322 2222223333333333
Q ss_pred HHHHHHHHh---CCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 547 QEAYLVFNK---IDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 547 ~~A~~~f~~---m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
..+...... ........+..........+....+...+.+.... .|+. ..+..+...+...+..+.|...+..+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 195 (388)
T d1w3ba_ 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp SHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc--CcchhHHHHhhcccccccCcHHHHHHHHHHH
Confidence 333222221 12233444555556666677777777777766554 3443 44555566777888889998888888
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HV 698 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~ 698 (968)
++.. +.+...+..+...|...|++++|...|++.. ..+...|..+...|...|++++|++.|++.++ +.|+ ..
T Consensus 196 l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~ 272 (388)
T d1w3ba_ 196 VTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPD 272 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHH
T ss_pred HHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHH
Confidence 7754 3456778889999999999999999998765 45677889999999999999999999999998 7786 45
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACR 776 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~ 776 (968)
++..+..++...|++++|.+.|+..... .+.+...+..+..++.+.|++++|.+.+++. .+.|+ +.+|..+...+.
T Consensus 273 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 350 (388)
T d1w3ba_ 273 AYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 7888999999999999999999987654 2344677888999999999999999999986 67776 778888888999
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
..|+++.|...++++++++|+++.+|..|+++|.+.|+
T Consensus 351 ~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 351 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=6.6e-17 Score=177.21 Aligned_cols=350 Identities=16% Similarity=0.107 Sum_probs=279.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCC
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSD-NIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGR 545 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 545 (968)
...+.+.|++++|++.|+++.+. .|+ ...+..+...+...|+++.|...+..+++..+. +..++..+...|.+.|+
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 45567889999999999999875 454 556677777888999999999999999887643 56778889999999999
Q ss_pred HHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 546 IQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 546 ~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
+++|...+...... +...+..........+....+............ ................+....+.......
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHHh
Confidence 99999999876543 334455555556666666776666665554432 23333334444455566666777666666
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HV 698 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~ 698 (968)
.... +.+...+..+...+...|++++|...+++.. +.+..+|..+...+...|++++|+..|++... ..|+ ..
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~ 238 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHH--HhhhHHH
Confidence 6543 4456778888999999999999999998765 34677899999999999999999999999988 4554 56
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-P-IEPDAMVWRTLLSAC 775 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~ 775 (968)
.+..+..++...|++++|..+|+...+ +.|+ ...|..++.++.+.|++++|.+.++.. . .+.+...|..+...+
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 788888999999999999999998754 4566 678889999999999999999999887 3 334578888888889
Q ss_pred HhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 776 RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 776 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
...|+++.|...++++++++|+++.++..++.+|...|++++|.+..+..-
T Consensus 316 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999776543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.3e-12 Score=135.69 Aligned_cols=194 Identities=15% Similarity=0.075 Sum_probs=146.2
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH------
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTF------ 700 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~------ 700 (968)
+...+..+...|...|++++|...|++.. +.+...|..+...|...|+.++|++.+++... +.|+...+
T Consensus 52 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~ 129 (323)
T d1fcha_ 52 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEE 129 (323)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC----
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhh
Confidence 34455666666777777777777776654 23566777777777888888888888887776 44442211
Q ss_pred ----------HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHH
Q 040643 701 ----------VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVW 768 (968)
Q Consensus 701 ----------~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~ 768 (968)
...+..+...+..+++.+.|....+...-.++...+..++.++.+.|++++|.+.+++. ...|+ ..+|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 209 (323)
T d1fcha_ 130 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW 209 (323)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccch
Confidence 11122233456678888888877654333344667888999999999999999999886 55565 8889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 769 RTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 769 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
..+...+...|+++.|...++++++++|+++.+|..|+.+|...|++++|.+..+..
T Consensus 210 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 266 (323)
T d1fcha_ 210 NKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 266 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 899889999999999999999999999999999999999999999999999876544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.6e-11 Score=128.60 Aligned_cols=260 Identities=11% Similarity=0.034 Sum_probs=172.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhh
Q 040643 536 LISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLAN 611 (968)
Q Consensus 536 Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~ 611 (968)
....|.+.|++++|...|+++.+ .+..+|..+...|...|++++|+..|.+..+. .|+. ..+..+...+...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--cccccccccccccccccccc
Confidence 45567777888888888876542 24557777777788888888888887776654 3432 344445556666666
Q ss_pred HHHHHHHHHHHHHhCCCCChh-HHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 612 IKQGKQVHAMIIKTGYDSETE-ASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 612 ~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
.++|.+.+..+.+.. |+.. .......... ..+.......+..+...+...+|.+.|++.++
T Consensus 103 ~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 103 QRQACEILRDWLRYT--PAYAHLVTPAEEGAG----------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp HHHHHHHHHHHHHTS--TTTGGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhc--cchHHHHHhhhhhhh----------------hcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 777766666665532 2111 0000000000 00111111122334455667788888888877
Q ss_pred CCCCCC---hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-
Q 040643 691 HDVMPN---HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD- 764 (968)
Q Consensus 691 ~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~- 764 (968)
..|+ ...+..+...+...|++++|..+|+..... .|+ ...|..++.+|.+.|++++|.+.+++. .+.|+
T Consensus 165 --~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 165 --LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp --HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred --HhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 4454 456777788888999999999999887543 455 667888899999999999999998886 55666
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH-----------HHHHHHHhhcCCcchHHH
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY-----------VLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~-----------~~l~~~y~~~g~~~~a~~ 820 (968)
+.+|..|..++...|+++.|....+++++++|++...+ ..|...+...|+++.+..
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77899999999999999999999999999999887754 346667777788776544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=7.2e-08 Score=100.50 Aligned_cols=216 Identities=13% Similarity=0.170 Sum_probs=134.8
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA 642 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 642 (968)
.++.+...+.+.+.+++|++++++..+. .|+.. ..|+.....+.
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~----------------------------------~a~~~r~~~l~ 88 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANY----------------------------------TVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCH----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCCh----------------------------------HHHHHHHHHHH
Confidence 4556666667777777777777777653 44443 33444444444
Q ss_pred hcC-CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHH
Q 040643 643 KCG-SIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGL 717 (968)
Q Consensus 643 k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 717 (968)
+.| ++++|.+.++... ..+..+|+.+...+...|++++|++.|+++++ +.|+ ...|..+...+.+.|++++|+
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al 166 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNEL 166 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHH
Confidence 444 3566666665543 33556666666666666666677777776666 5564 445666666666667777777
Q ss_pred HHHHHhhhhcCCCCC-cchHHHHHHHHhhcCC------hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHH
Q 040643 718 RYFESMSTEYGLVPK-PEHYACVVDLLGRAGC------LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAA 788 (968)
Q Consensus 718 ~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~------~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 788 (968)
+.|+.+.+ +.|+ ...|..+..++.+.|. +++|.+.+++. ...|+ ...|..+...+.. ...+.+....
T Consensus 167 ~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~ 242 (315)
T d2h6fa1 167 QYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLL 242 (315)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHH
T ss_pred HHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHH
Confidence 76666643 2444 4445555555555444 56777777665 55664 7888877666654 4467888999
Q ss_pred HHHHccCCCCcch--HHHHHHHHhhc--CCcchHHH
Q 040643 789 NHLLELEPEDSAT--YVLLSNIYAAA--GKWDCRDQ 820 (968)
Q Consensus 789 ~~~~~l~p~~~~~--~~~l~~~y~~~--g~~~~a~~ 820 (968)
+++++++|+.... +..++.+|... +..+.+..
T Consensus 243 ~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~ 278 (315)
T d2h6fa1 243 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED 278 (315)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999876554 45677777654 45455544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=3.4e-08 Score=103.02 Aligned_cols=189 Identities=9% Similarity=0.081 Sum_probs=156.0
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHG-YALEAINLFEKMKKHDVMPN-HVTFVGVLSA 706 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a 706 (968)
..++-+...|.+.+..++|.++++++. .| +...|+.....+...| +.++|++.+++.++ +.|+ ..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHH
Confidence 345566667888999999999999886 44 6779999999988876 59999999999999 7887 4589999999
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC---
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKN--- 780 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~--- 780 (968)
+...|++++|+.+|+.+.+ +.|+ ...|..++.++.+.|++++|.+.++++ .+.|+ ...|..+.......++
T Consensus 122 ~~~l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHhhccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 9999999999999998865 4676 778889999999999999999999998 66675 7788776655554443
Q ss_pred ---hhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 781 ---MEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 781 ---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.+.|....+++++++|++...+..++.+|...| .+++.+..+...
T Consensus 199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 578889999999999999999999999988766 466666555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.76 E-value=2.3e-07 Score=96.50 Aligned_cols=186 Identities=11% Similarity=0.067 Sum_probs=149.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-C-HHHHHHHHHHHHhcCCHHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-N-EVSWNAMITGFSQHGYALEAINLF 685 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d-~~~~~~li~~~~~~g~~~~A~~l~ 685 (968)
+..+++..+++.+++...+.+...+..++..+.+.|+++.|..+|+++. .| + ...|...+..+.+.|+.++|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 4567888888888876556677788889999999999999999999865 23 3 347999999999999999999999
Q ss_pred HHHHHCCCCCC-hHHHHHHHH-HHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----
Q 040643 686 EKMKKHDVMPN-HVTFVGVLS-ACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM---- 759 (968)
Q Consensus 686 ~~m~~~g~~Pd-~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m---- 759 (968)
+++++ ..|+ ...|..... -+...|+.+.|..+|+.+.+.+ +.+...+...++.+.+.|++++|..++++.
T Consensus 158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99988 4454 334444333 2445789999999999987653 223677888999999999999999999885
Q ss_pred CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 760 PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 760 ~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
|..|+ ..+|...+.--..||+.+.+..+.+++.++-|++.
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 55554 67899999998999999999999999999888764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=3e-07 Score=97.39 Aligned_cols=257 Identities=13% Similarity=-0.017 Sum_probs=155.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCCC--C-C-----cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc-CCcchHHHHHHHHh
Q 040643 537 ISLYARCGRIQEAYLVFNKIDA--K-D-----NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ-ANLYTFGSVVSAAA 607 (968)
Q Consensus 537 i~~y~k~g~~~~A~~~f~~m~~--~-d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~ 607 (968)
...+...|++++|.+.|++..+ | + ...++.+...|...|++++|+..|++....... ++...
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------- 89 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY--------- 89 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH---------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH---------
Confidence 4445566666666666654321 1 1 123455555666666666666666655432110 01000
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-------CC----CHHHHHHHHHHHHhcC
Q 040643 608 NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-------EK----NEVSWNAMITGFSQHG 676 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~----d~~~~~~li~~~~~~g 676 (968)
....+..+...|...|++..|...+.... .+ ....+..+...+...|
T Consensus 90 ----------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 90 ----------------------ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp ----------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 01222334445556666666655554422 11 1234555667777788
Q ss_pred CHHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHHhhcC
Q 040643 677 YALEAINLFEKMKKHDVMP----NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-----PEHYACVVDLLGRAG 747 (968)
Q Consensus 677 ~~~~A~~l~~~m~~~g~~P----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l~r~G 747 (968)
+.++|...+++.....-.. ...++......+...|...++...+......+.-... ...+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 8888888887776532111 1234455555667778888888777765443322222 223455667778889
Q ss_pred ChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHc------cCCCCcchHHHHHHHHhhcCCc
Q 040643 748 CLSRAREFTEQM-PIEP-----DAMVWRTLLSACRVHKNMEIGEYAANHLLE------LEPEDSATYVLLSNIYAAAGKW 815 (968)
Q Consensus 748 ~~~eA~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------l~p~~~~~~~~l~~~y~~~g~~ 815 (968)
++++|.+.+++. ...| ....+..+..++...|+.+.|...++++++ ..|.....+..++.+|...|++
T Consensus 228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 307 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK 307 (366)
T ss_dssp CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence 999998888876 2222 145566677778889999999998888874 4566778899999999999999
Q ss_pred chHHHHHHH
Q 040643 816 DCRDQIRQI 824 (968)
Q Consensus 816 ~~a~~~~~~ 824 (968)
++|.+..+.
T Consensus 308 ~~A~~~l~~ 316 (366)
T d1hz4a_ 308 SDAQRVLLD 316 (366)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999986544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.69 E-value=3.4e-08 Score=100.01 Aligned_cols=188 Identities=14% Similarity=0.076 Sum_probs=109.5
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHc
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACS 708 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~ 708 (968)
++..+...|.+.|++++|.+.|++.. +.++.+|+.+..+|...|++++|++.|+++++ +.|+ ..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHHH
Confidence 44555667777777777777777655 34667777777777777777777777777777 5665 446777777777
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH----HhcCChh
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSAC----RVHKNME 782 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~----~~~g~~~ 782 (968)
..|++++|...|+...+. .|+ ......+...+.+.+..+.+..+.... ...++...|.. +... ...+..+
T Consensus 117 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhH-HHHHHHHHHHHHHHH
Confidence 777777777777766543 343 223333334444445444443333322 11111111211 1111 1112233
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.+.........+.|..+.+|..|+.+|...|++++|.+..+...
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 236 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAV 236 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444444445566666677777888888888888877655443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.66 E-value=9.6e-09 Score=108.79 Aligned_cols=229 Identities=9% Similarity=-0.023 Sum_probs=164.0
Q ss_pred hcCChhhHHHHHHHhhhcCCcCCcc-hHHHHHHHHhhhh--hHHHHHHHHHHHHHhCCCCChhHH-hHHhhHHHhcCCHH
Q 040643 573 QSGYCEGALQVFSQMTQVGVQANLY-TFGSVVSAAANLA--NIKQGKQVHAMIIKTGYDSETEAS-NSLITLYAKCGSID 648 (968)
Q Consensus 573 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~k~g~~~ 648 (968)
..|.+++|+.+|+...+. .|+.. .+.....++...+ +.+++...+..+++... .+...+ ..+...+...|..+
T Consensus 85 ~~~~~~~al~~~~~~l~~--~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 85 SAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHh--CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccH
Confidence 344567788888877654 45443 3334444444444 47788888887777542 234433 34456777789999
Q ss_pred HHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 649 DAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 649 ~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
+|...++.+.+ .+..+|+.+...+...|+.++|...+++..+ +.|+... +...+...+..+++...+.....
T Consensus 162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~---~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKELE---LVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHHHH---HHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHHHH---HHHHHHHhcchhHHHHHHHHHHH
Confidence 99999988773 3678899999999999998888777666555 4444332 22333445666677777776643
Q ss_pred hcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHH
Q 040643 726 EYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 726 ~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
. -++....+..++..+...|+.++|.+.+.+. +..|+ ..+|..+...+...|+.+.|....+++++++|.+..+|.
T Consensus 237 ~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~ 314 (334)
T d1dcea1 237 G--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD 314 (334)
T ss_dssp S--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred h--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHH
Confidence 2 2344667777888889999999999888776 77776 778888888899999999999999999999999999999
Q ss_pred HHHHHHhh
Q 040643 804 LLSNIYAA 811 (968)
Q Consensus 804 ~l~~~y~~ 811 (968)
.|++.+.-
T Consensus 315 ~L~~~~~~ 322 (334)
T d1dcea1 315 DLRSKFLL 322 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhH
Confidence 88887763
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=7.6e-08 Score=97.33 Aligned_cols=199 Identities=9% Similarity=-0.063 Sum_probs=131.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhc
Q 040643 599 FGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQH 675 (968)
Q Consensus 599 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~ 675 (968)
+..+-..+.+.|++++|...+..+++.. +.++.+++.+...|.+.|++++|.+.|+++. .| +..+|..+...|...
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 118 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 118 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3344445566677777777776666643 3467788888999999999999999999876 33 567899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhh---cCChHH
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGR---AGCLSR 751 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r---~G~~~e 751 (968)
|++++|++.|++.++ ..|+ ......+..+....+..+....+...... ..+....+...-..++. .+..++
T Consensus 119 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 119 GRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNIVEFYLGNISEQTLMER 193 (259)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHHHHHHTTSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999988 5665 33444444455555655555555554432 23333333322222222 222333
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHH
Q 040643 752 AREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 752 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
+...+... ...|+ ..+|..|...+...|+.+.|....+++++.+|++...|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 33332221 22344 456777777889999999999999999999998875553
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.64 E-value=8.9e-07 Score=93.59 Aligned_cols=221 Identities=10% Similarity=0.036 Sum_probs=119.7
Q ss_pred HHhhcccchhhhhhhhHhhhhhcCCCC----chhhhhHHHHHHHcCCHHHHHHHHHhCCC-----CC----cccHHHHHH
Q 040643 503 SACAGIQALNQGRQIHAQSYISGFSDD----LSIGNALISLYARCGRIQEAYLVFNKIDA-----KD----NISWNGLIS 569 (968)
Q Consensus 503 ~a~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~ 569 (968)
..+...|+++.|.+++...++.....+ ...++.+...|...|++++|...|++... ++ ..++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 446788999999999999987654433 24566788899999999999999987642 11 234566677
Q ss_pred HHHhcCChhhHHHHHHHhhhc----CCcCCc---chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC----ChhHHhHHh
Q 040643 570 GFAQSGYCEGALQVFSQMTQV----GVQANL---YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDS----ETEASNSLI 638 (968)
Q Consensus 570 ~~~~~g~~~~A~~l~~~m~~~----g~~p~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~li 638 (968)
.|...|++..|...+.+.... +..+.. ..+..+-..+...|+++.+...+.......... ....+..+.
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 788888988888888776542 111111 122233344555666666666665555432211 112222333
Q ss_pred hHHHhcCCHHHHHHHHhcCC-------CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMP-------EK---NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN---HVTFVGVLS 705 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~-------~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~ 705 (968)
..+...|...++...+.... .. ....+..+...+...|+.++|...+++..+....++ ..++..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 34444455444444333221 11 112334444445555555555555555443211111 112333444
Q ss_pred HHcccCcHHHHHHHHHHh
Q 040643 706 ACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m 723 (968)
++...|++++|..+++..
T Consensus 260 ~~~~~g~~~~A~~~~~~a 277 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEEL 277 (366)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 455555555555555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.57 E-value=8e-07 Score=92.21 Aligned_cols=178 Identities=8% Similarity=0.055 Sum_probs=97.4
Q ss_pred hhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCC---C-cccHHHHHHHHHhcCChhhHHHHHHH
Q 040643 511 LNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAK---D-NISWNGLISGFAQSGYCEGALQVFSQ 586 (968)
Q Consensus 511 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d-~~~~~~li~~~~~~g~~~~A~~l~~~ 586 (968)
.+.+..++...++...+.+..++...+..+.+.|+.+.|+.+|+++... + ...|...+....+.|+.++|.++|.+
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 4555666666665544445556666666666777777777777654321 2 22466666666666666677777666
Q ss_pred hhhcCCcCCcchHHHHH-HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-----CC
Q 040643 587 MTQVGVQANLYTFGSVV-SAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-----EK 660 (968)
Q Consensus 587 m~~~g~~p~~~t~~~ll-~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~ 660 (968)
+.+.+... ...+.... --....++.+.|..+++.+++. .+.+...+...++++.+.|+++.|+.+|++.. .|
T Consensus 160 al~~~~~~-~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDARTR-HHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTCC-THHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCCc-HHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 65543211 11111111 1122235566666666666554 23445556666666666666666666666532 11
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 661 --NEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 661 --d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
....|...+.--..+|+.+.+.++++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233566666655666666666666665554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.54 E-value=2.2e-08 Score=105.92 Aligned_cols=243 Identities=9% Similarity=-0.078 Sum_probs=173.2
Q ss_pred cCChhhHHHHHHHhhhcCCcCCcchHH----HHHHH-------HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQANLYTFG----SVVSA-------AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA 642 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~a-------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 642 (968)
.+..++|++++.+..+. .|+..+.- .++.. ....+.++++..++..+++.. +.+...+..+...+.
T Consensus 42 ~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 118 (334)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHH
Confidence 33457888888877653 57765431 12222 334566788888888888754 445666666666666
Q ss_pred hcC--CHHHHHHHHhcCC---CCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHH
Q 040643 643 KCG--SIDDAKREFLEMP---EKNEVSWNAMI-TGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 643 k~g--~~~~A~~~f~~~~---~~d~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~ 715 (968)
..+ ++++|...++++. .++...|...+ ..+...|..++|+..++++++ ..|+ ...+..+..++...|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhcCHHH
Confidence 655 5889999998875 44677776544 667778999999999999988 6776 5578888888888888888
Q ss_pred HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 040643 716 GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLE 793 (968)
Q Consensus 716 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 793 (968)
|...+....+. .|. .......+...+..++|...+.+. ...++...+..+...+...|+.+.|...+.++++
T Consensus 197 A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 197 SGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 76665544322 221 122334456677777777766654 2223344555666677788999999999999999
Q ss_pred cCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 794 LEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 794 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.+|.+..++..++++|...|++++|.+..+...+
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999998776644
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.3e-06 Score=83.07 Aligned_cols=142 Identities=9% Similarity=-0.007 Sum_probs=105.9
Q ss_pred hhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHH
Q 040643 638 ITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 638 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a 716 (968)
...+...|+++.|.+.|+++.+++...|..+...|...|++++|++.|++.++ +.|+ ...|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 34577889999999999999999999999999999999999999999999999 7887 55789999999999999999
Q ss_pred HHHHHHhhhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 040643 717 LRYFESMSTEYGLVPKP-EHYACVVDLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLEL 794 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~~-~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 794 (968)
.+.|++..... +++. ..|.. .| +..+++ ..+|..+..++...|+++.|....++++++
T Consensus 90 ~~~~~kAl~~~--~~n~~~~~~~-------~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQL--RGNQLIDYKI-------LG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTT--TTCSEEECGG-------GT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--ccCchHHHHH-------hh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999875421 1111 00100 00 011111 234445556677788888888888888888
Q ss_pred CCCCcch
Q 040643 795 EPEDSAT 801 (968)
Q Consensus 795 ~p~~~~~ 801 (968)
.|+....
T Consensus 150 ~~~~~~~ 156 (192)
T d1hh8a_ 150 KSEPRHS 156 (192)
T ss_dssp CCSGGGG
T ss_pred CCCcchH
Confidence 8775433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.37 E-value=7.7e-07 Score=76.92 Aligned_cols=88 Identities=8% Similarity=0.084 Sum_probs=66.3
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcch
Q 040643 740 VDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 817 (968)
+..+.+.|++++|.+++++. ...|+ +..|..+..++...|+.+.|...++++++++|+++.+|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 45566677777777777776 44554 66777777778888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 040643 818 RDQIRQIMKD 827 (968)
Q Consensus 818 a~~~~~~m~~ 827 (968)
|....+...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 8876665443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.5e-06 Score=73.53 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=70.3
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNM 781 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 781 (968)
..+...|++++|..+|+...+. .|+ ...|..+..+|...|++++|++.+++. .+.|+ +..|..+..++...|+.
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc---CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3444555555555555554332 333 445555566666666666666666554 33444 67787888888888999
Q ss_pred hHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 782 EIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
+.|....+++++++|+++..+..++++.+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 99999999999999999999988888754
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.24 E-value=1.2e-06 Score=84.17 Aligned_cols=91 Identities=12% Similarity=-0.012 Sum_probs=49.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
.+-+--.+..|.+.|++++|.+.+++. .+.|+ +.+|..+..++...|+++.|...++++++++|+++.+|..++.+|.
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~ 83 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 333334445555555555555555443 33333 5555555555555666666666666666666666666666666666
Q ss_pred hcCCcchHHHHHH
Q 040643 811 AAGKWDCRDQIRQ 823 (968)
Q Consensus 811 ~~g~~~~a~~~~~ 823 (968)
..|++++|....+
T Consensus 84 ~l~~~~~A~~~~~ 96 (201)
T d2c2la1 84 EMESYDEAIANLQ 96 (201)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHH
Confidence 6666666655433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.14 E-value=1.5e-06 Score=74.24 Aligned_cols=88 Identities=18% Similarity=0.093 Sum_probs=78.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 737 ACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 737 ~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
-.++..+.+.|++++|...+++. ...|+ +.+|..|..++...|+.+.|+...+++++++|+++.++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677788899999999999887 56675 88898888899999999999999999999999999999999999999999
Q ss_pred cchHHHHHHH
Q 040643 815 WDCRDQIRQI 824 (968)
Q Consensus 815 ~~~a~~~~~~ 824 (968)
+++|.+..++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=7.2e-06 Score=75.20 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=68.6
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcc
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 816 (968)
.+..|.+.|++++|.+.+++. .+.|+ ...|..+...+...|+++.|...++++++++|++..+|..++.+|...|+|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 345667788888888877776 45555 7777777777888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHH
Q 040643 817 CRDQIRQIMK 826 (968)
Q Consensus 817 ~a~~~~~~m~ 826 (968)
+|.+..+...
T Consensus 96 eA~~~~~~a~ 105 (159)
T d1a17a_ 96 AALRDYETVV 105 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887655443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.6e-05 Score=75.29 Aligned_cols=120 Identities=10% Similarity=0.003 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcC
Q 040643 669 ITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAG 747 (968)
Q Consensus 669 i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G 747 (968)
...+...|++++|++.|++. ..|+..++..+..++...|++++|.+.|++..+ +.|+ ...|..+..++.+.|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~---ldp~~~~a~~~~g~~~~~~g 84 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN---RDKHLAVAYFQRGMLYYQTE 84 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH---HhhhhhhhHHHHHHHHHhhc
Confidence 44456666677776666643 234555566666666666666666666665543 2343 344444445555555
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC----------------cchHHHHHHHHhh
Q 040643 748 CLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPED----------------SATYVLLSNIYAA 811 (968)
Q Consensus 748 ~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~----------------~~~~~~l~~~y~~ 811 (968)
++++| ...++++++..|.+ ...+..++.+|..
T Consensus 85 ~~~~A--------------------------------~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~ 132 (192)
T d1hh8a_ 85 KYDLA--------------------------------IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAK 132 (192)
T ss_dssp CHHHH--------------------------------HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHH
T ss_pred cHHHH--------------------------------HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHH
Confidence 55555 44444444443332 2456789999999
Q ss_pred cCCcchHHHHHHHHHh
Q 040643 812 AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~ 827 (968)
.|+|++|.+..+...+
T Consensus 133 ~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 133 KEEWKKAEEQLALATS 148 (192)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999987665443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=7.5e-06 Score=75.07 Aligned_cols=88 Identities=7% Similarity=0.017 Sum_probs=59.2
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
...|..+..+|...|++++|.+.+++. .+.|+ ..+|..+..++...|+.+.|...++++++++|+++..+..+..+..
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 44 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 333444444455555555555544444 33454 5678888888888999999999999999999999988888776643
Q ss_pred --hcCCcchHHH
Q 040643 811 --AAGKWDCRDQ 820 (968)
Q Consensus 811 --~~g~~~~a~~ 820 (968)
..+.|+++..
T Consensus 124 ~~~~~~~~~a~~ 135 (159)
T d1a17a_ 124 IVKQKAFERAIA 135 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 3445666654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.02 E-value=4.3e-06 Score=80.22 Aligned_cols=94 Identities=7% Similarity=-0.100 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHH
Q 040643 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYA 737 (968)
Q Consensus 660 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~ 737 (968)
|+..........|.+.|++++|+..|++.++ +.|+ ...|..+..++...|++++|+..|+... .+.|+ ...|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~--~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHH
Confidence 4444455556666677777777777777666 4564 3455666666666666666666666553 34454 44455
Q ss_pred HHHHHHhhcCChHHHHHHHHh
Q 040643 738 CVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~ 758 (968)
.++.+|.+.|++++|...+++
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQR 97 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 555555555555555555544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.00 E-value=4.6e-05 Score=77.60 Aligned_cols=187 Identities=10% Similarity=0.016 Sum_probs=124.8
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--hHHHH
Q 040643 636 SLITLYAKCGSIDDAKREFLEMPE-----KN----EVSWNAMITGFSQHGYALEAINLFEKMKKHDV---MPN--HVTFV 701 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~Pd--~~t~~ 701 (968)
-..++|..+|++++|.+.|.+..+ .| ..+|+.+...|.+.|++++|++.+++..+.-. .|. ..++.
T Consensus 42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 121 (290)
T d1qqea_ 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF 121 (290)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence 345678899999999998887642 22 35789999999999999999999998765211 111 23566
Q ss_pred HHHHHHc-ccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC----CCCC----C-HHH
Q 040643 702 GVLSACS-HVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM----PIEP----D-AMV 767 (968)
Q Consensus 702 ~ll~a~~-~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p----~-~~~ 767 (968)
.+...|. ..|++++|.++++...+-+....+ ...|..+++++...|++++|.+.+++. +-.| . ...
T Consensus 122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~ 201 (290)
T d1qqea_ 122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201 (290)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence 6666674 469999999999887543222222 445778899999999999999999885 2121 1 122
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch--H---HHHHHHHhh--cCCcchHHHHH
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT--Y---VLLSNIYAA--AGKWDCRDQIR 822 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~--~---~~l~~~y~~--~g~~~~a~~~~ 822 (968)
+....-.+...|+.+.|...++++.+++|..+.. + ..|...|.. .+++++|..-.
T Consensus 202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y 263 (290)
T d1qqea_ 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEF 263 (290)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3334444667899999999999999999864433 2 334444443 34566666544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.99 E-value=7.5e-06 Score=70.70 Aligned_cols=106 Identities=18% Similarity=0.011 Sum_probs=68.1
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh---HHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL---SRAREFTEQM-PIEPDA---MVWRTLLSA 774 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~---~eA~~~~~~m-~~~p~~---~~~~~ll~~ 774 (968)
+++.+...+++++|.+.|+.... +.|+ .+++..+..+|.++++. ++|.+++++. ...|+. .+|..|..+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 44444455555555555554432 2333 44555555555544333 3466666664 344432 367778888
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
|...|+++.|+..++++++++|++..+..++..|...
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999888887766543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.8e-05 Score=73.19 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
..+......+.+.|++++|+..|++.++ +.|.... ..+.-......+. ...|..+..+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~--~~~~~~~------------~~~~~~~~~~~~~--------~~~~~nla~~ 71 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESS------------FSNEEAQKAQALR--------LASHLNLAMC 71 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCC------------CCSHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhhccc------------cchHHHhhhchhH--------HHHHHHHHHH
Confidence 4556667788889999999999998886 3332110 0001111111111 1246678888
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 743 LGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
|.+.|++++|+..+++. .+.|+ +.+|..+..++...|+++.|...++++++++|+|+.....++.++...+...+..
T Consensus 72 y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 72 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 56674 8888888888999999999999999999999999999999999988777666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.92 E-value=0.00028 Score=71.49 Aligned_cols=132 Identities=9% Similarity=-0.013 Sum_probs=63.6
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-----
Q 040643 665 WNAMITGFSQ-HGYALEAINLFEKMKK----HDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP----- 733 (968)
Q Consensus 665 ~~~li~~~~~-~g~~~~A~~l~~~m~~----~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~----- 733 (968)
+..+...|.. .|++++|++.|++..+ .+-.|. ..++..+...+...|++++|.++|+.......-.|..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~ 199 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHH
Confidence 4444444433 4666666666666543 111121 2245555666666667777776666654432222211
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhc--CChhHHHHHHHHHHccCC
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD------AMVWRTLLSACRVH--KNMEIGEYAANHLLELEP 796 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~------~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~l~p 796 (968)
.+|..++-.+...|+++.|...+++. .+.|+ ......|+.++... ..++.|....+++.+++|
T Consensus 200 ~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 12334444555667777777776665 33332 22334455444432 124445554545555544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.87 E-value=6.3e-05 Score=69.40 Aligned_cols=110 Identities=9% Similarity=0.003 Sum_probs=78.8
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVH 778 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 778 (968)
.+.-....+...|++++|+..|+...+...-.+...... ......+. ..+|..+..++...
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~-----------~~~~~~~~--------~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE-----------AQKAQALR--------LASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH-----------HHHHHHHH--------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH-----------HhhhchhH--------HHHHHHHHHHHHhh
Confidence 344556677788888888888877655433222211100 00000111 23566677778899
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
|+++.|+..++++++++|+++.+|..++.+|...|+|++|....+...+
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=6.3e-05 Score=69.40 Aligned_cols=128 Identities=14% Similarity=0.049 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHh
Q 040643 666 NAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLG 744 (968)
Q Consensus 666 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~ 744 (968)
......+...|++++|++.|+++++ +.|.. .+ .....+. ..+.|. ...|..+..++.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~--~~~~~-------~~---~~~~~~~----------~~~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLR--YVEGS-------RA---AAEDADG----------AKLQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HHHHH-------HH---HSCHHHH----------GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hhhhh-------hh---hhhhHHH----------HHhChhhHHHHHHHHHHHH
Confidence 3445567778888888888887764 11110 00 0000000 011222 445677888899
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCc
Q 040643 745 RAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKW 815 (968)
Q Consensus 745 r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 815 (968)
+.|++++|+..+++. .+.|+ +.+|..+..++...|+++.|...++++++++|+|..++..|..++......
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999988887 67776 888989999999999999999999999999999999999998887654433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.73 E-value=0.00012 Score=66.01 Aligned_cols=132 Identities=8% Similarity=-0.024 Sum_probs=89.7
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVH 778 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 778 (968)
.+..-...+.+.|++++|...|....+-..-.+.... ......... ....++..+..++...
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~--------------~~~~~~~~~----~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD--------------QILLDKKKN----IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC--------------HHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh--------------HHHHHhhhh----HHHHHHhhHHHHHHHh
Confidence 3444566777788888888877766543221111000 000000000 0124566777778899
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcch
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLA 858 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~ 858 (968)
|+++.|...++++++++|.+..+|..++.+|...|+|++|....+...+. .|..
T Consensus 81 ~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l--------------------------~P~n 134 (153)
T d2fbna1 81 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--------------------------NPNN 134 (153)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTC
T ss_pred cccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCC
Confidence 99999999999999999999999999999999999999999876654432 2666
Q ss_pred HHHHHHHHHHHHHHHH
Q 040643 859 DKIYDYLGNLNRRVAE 874 (968)
Q Consensus 859 ~~i~~~l~~l~~~~~~ 874 (968)
.++...+..+..+|++
T Consensus 135 ~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 135 LDIRNSYELCVNKLKE 150 (153)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777764
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=6e-05 Score=65.73 Aligned_cols=87 Identities=9% Similarity=0.061 Sum_probs=71.8
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch-------HHHHHHH
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT-------YVLLSNI 808 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-------~~~l~~~ 808 (968)
-+++.+.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+++.|...++++++++|+++.. |..++.+
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888776 45555 7888888888999999999999999999999988764 5556778
Q ss_pred HhhcCCcchHHHHHHH
Q 040643 809 YAAAGKWDCRDQIRQI 824 (968)
Q Consensus 809 y~~~g~~~~a~~~~~~ 824 (968)
+...|++++|.+..+.
T Consensus 89 ~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHH
Confidence 8888999999997553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.67 E-value=0.00014 Score=66.89 Aligned_cols=134 Identities=13% Similarity=0.080 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
..+.-....+...|++.+|+..|++.+. +.|.. .+...+-......+. ...|..+.-+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~--~~~~~------------~~~~~~~~~~~~~~~--------~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVS--WLEME------------YGLSEKESKASESFL--------LAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTC------------CSCCHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHh------------hccchhhhhhcchhH--------HHHHHhHHHH
Confidence 4555666777778888888888877654 11110 000000001111110 1236667788
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchH
Q 040643 743 LGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 818 (968)
|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+++.|...++++++++|+++.+...+..+....+...+.
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~ 151 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 88999999999998886 45555 788888888999999999999999999999999999999999998887766554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.64 E-value=0.014 Score=58.96 Aligned_cols=211 Identities=10% Similarity=0.077 Sum_probs=123.5
Q ss_pred HHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHH
Q 040643 254 ALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRT 333 (968)
Q Consensus 254 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 333 (968)
...+.+.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+.. +..+|..+..+|........
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~l 87 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRL 87 (336)
T ss_dssp ----------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHH
Confidence 34455556677777777776543 46667777777777777777766542 34466677777766555433
Q ss_pred HHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 040643 334 GEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTE---TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTE 410 (968)
Q Consensus 334 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 410 (968)
+ .+...+...+......++..|-..|.+++...+++... ..+...++.++..|++.+ .++-++.+...
T Consensus 88 a-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~--- 158 (336)
T d1b89a_ 88 A-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF--- 158 (336)
T ss_dssp H-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH---
T ss_pred H-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc---
Confidence 2 12222233444555677888888888888888887543 345566778888887765 33333333332
Q ss_pred CCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040643 411 GLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMEN 488 (968)
Q Consensus 411 g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 488 (968)
.+......+++.|-..+-+.++.-++.+.+.++.|..+.-.-+ ++.......+..+.+..+++...++.....+
T Consensus 159 ---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~ 232 (336)
T d1b89a_ 159 ---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYRAIQFYLE 232 (336)
T ss_dssp ---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH
T ss_pred ---cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHHHHHHHHH
Confidence 1234445677788888888888888888888887765543322 2223334455666666666655555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.61 E-value=0.00012 Score=67.46 Aligned_cols=83 Identities=8% Similarity=0.027 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCE
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNS 844 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~ 844 (968)
...|..+...+...|+.+.|...++++++++|+++.+|..++.+|...|++++|.+..+...+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l---------------- 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---------------- 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh----------------
Confidence 5677777778889999999999999999999999999999999999999999999976655442
Q ss_pred EEEEecCCCCCcchHHHHHHHHHHHHHHH
Q 040643 845 IHAFFVGDRLHPLADKIYDYLGNLNRRVA 873 (968)
Q Consensus 845 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 873 (968)
.|...++...|..+..+++
T Consensus 141 ----------~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 141 ----------APEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp ----------CTTCHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHH
Confidence 1444566777776666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.57 E-value=0.00027 Score=64.78 Aligned_cols=130 Identities=5% Similarity=-0.040 Sum_probs=88.4
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVH 778 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 778 (968)
.+.-....+...|++++|...|+.........+.... ++. ...+.+ ...++..+..++...
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~--------------~~~-~~~~~~----~~~~~~Nla~~~~~l 77 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE--------------KES-KASESF----LLAAFLNLAMCYLKL 77 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH--------------HHH-HHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch--------------hhh-hhcchh----HHHHHHhHHHHHHHh
Confidence 3455667777778888887777765433222111100 000 000000 023455566667899
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcch
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLA 858 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~ 858 (968)
|+++.|...++++++++|++..+|..++.+|...|+|++|.+..+...+. .|..
T Consensus 78 ~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--------------------------~P~n 131 (168)
T d1kt1a1 78 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--------------------------NPQN 131 (168)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--------------------------CTTC
T ss_pred hhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCC
Confidence 99999999999999999999999999999999999999999987766542 3555
Q ss_pred HHHHHHHHHHHHHHH
Q 040643 859 DKIYDYLGNLNRRVA 873 (968)
Q Consensus 859 ~~i~~~l~~l~~~~~ 873 (968)
.++...+..+...+.
T Consensus 132 ~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 132 KAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777766665554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.0005 Score=58.76 Aligned_cols=101 Identities=7% Similarity=-0.027 Sum_probs=72.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCH---HHHHHHHhcCCC--CCH---HHHHHHHHH
Q 040643 600 GSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSI---DDAKREFLEMPE--KNE---VSWNAMITG 671 (968)
Q Consensus 600 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~---~~A~~~f~~~~~--~d~---~~~~~li~~ 671 (968)
..+++.+...+++++|++.+..+++.+ +.++.++..+...+.+.++. ++|.++|+++.. |+. .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777778888888888888888765 44666777777777765544 458888887653 222 367778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPNHVTFVGV 703 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~l 703 (968)
|.+.|++++|++.|+++++ +.|+......+
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHH
Confidence 8888888888888888888 77876544333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=1.5e-05 Score=88.33 Aligned_cols=130 Identities=8% Similarity=-0.012 Sum_probs=56.0
Q ss_pred CHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 677 YALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 677 ~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
.++.|+..+.+... +.|+ ...+..+...+...|+.++|...+...... .| ...+.++++++...|++++|...
T Consensus 101 ~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 101 FYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHTC---------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHH
Confidence 34444444433332 4443 334555555556666666666555433211 11 23455566666666666666666
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 756 TEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 756 ~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
+++. .+.|+ ...|..|...+...|+...|.....+++.++|+.+.++..|..+|.+.
T Consensus 175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 6655 44554 455666666666666666666666666666666666666666655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.54 E-value=0.00027 Score=63.64 Aligned_cols=128 Identities=9% Similarity=-0.042 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
...|......+.+.|++.+|+..|++.+. +.|... ...-.........+ ....|..+..
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~--~~~~~~-----------~~~~~~~~~~~~~~--------~~~~~~Nla~ 75 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTE-----------EWDDQILLDKKKNI--------EISCNLNLAT 75 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCT-----------TCCCHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcchh-----------hhhhHHHHHhhhhH--------HHHHHhhHHH
Confidence 45778888899999999999999999987 333211 00000011111111 1235677888
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
+|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+++.|...++++++++|+|+.....+..+..
T Consensus 76 ~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 76 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999998886 66675 8899999999999999999999999999999999998887766543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.47 E-value=0.00021 Score=60.38 Aligned_cols=86 Identities=12% Similarity=-0.057 Sum_probs=45.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhh
Q 040643 668 MITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGR 745 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r 745 (968)
+...+.+.|++++|+..|++.++ ..|+ ...|..+..++.+.|++++|...|+...+ +.|+ ...+..++..|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARM---LDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhcccccccc---cccccccchHHHHHHHHH
Confidence 34445555556666666665555 4454 33455555555555555555555555432 2343 4445555555555
Q ss_pred cCChHHHHHHHHh
Q 040643 746 AGCLSRAREFTEQ 758 (968)
Q Consensus 746 ~G~~~eA~~~~~~ 758 (968)
.|++++|.+.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.36 E-value=0.062 Score=54.01 Aligned_cols=277 Identities=11% Similarity=0.105 Sum_probs=160.5
Q ss_pred hHHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchH
Q 040643 152 NPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFE 231 (968)
Q Consensus 152 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 231 (968)
..+...+-+.|.++.|..++..+.. |..++..+.+.+++..|++++.+.. +..+|..+..+|.......
T Consensus 18 ~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~ 86 (336)
T d1b89a_ 18 QQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFR 86 (336)
T ss_dssp -----------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHH
Confidence 3444555677788888888876653 7777888888888888888876542 4557777777777665543
Q ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCC---CCCcccHHHHHHHHHcCCChhHHHHHHHHhhc
Q 040643 232 IGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ---QRDGVTYNSLISGLAQCGYSDKALELFEKMQL 308 (968)
Q Consensus 232 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 308 (968)
.+ .+.......++.-...++..|-..|.+++...+++... ..+...++.++..|++.+ +++-++.+...
T Consensus 87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~-- 158 (336)
T d1b89a_ 87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF-- 158 (336)
T ss_dssp HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH--
T ss_pred HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc--
Confidence 32 22222334455555678888999999999998888643 335556888888888864 34444444332
Q ss_pred cccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHH
Q 040643 309 DCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVML 388 (968)
Q Consensus 309 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 388 (968)
.+.+-...++..|...+-++ .++-.|.+.|+++.|..+.-.-+ +++.-....+
T Consensus 159 ----s~~y~~~k~~~~c~~~~l~~----------------------elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~ 211 (336)
T d1b89a_ 159 ----WSRVNIPKVLRAAEQAHLWA----------------------ELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFK 211 (336)
T ss_dssp ----STTSCHHHHHHHHHTTTCHH----------------------HHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHH
T ss_pred ----cccCCHHHHHHHHHHcCChH----------------------HHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHH
Confidence 12333455666665554443 34556677777777766543321 1222234455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCC-CCceeHHHHH
Q 040643 389 VAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPE-DDVVSWTAMI 467 (968)
Q Consensus 389 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li 467 (968)
..+.+..+.+...++.....+. .| ...+.+|......-+.....+.+...+++......+..... .+....+++.
T Consensus 212 e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~~~vn~al~ 287 (336)
T d1b89a_ 212 DIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLN 287 (336)
T ss_dssp HHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcChHHHHHHHH
Confidence 6666666666655555554442 23 33455555555555555555555555665555555544333 2344566777
Q ss_pred HHHHhcCChhH
Q 040643 468 VGFVQHGMFGE 478 (968)
Q Consensus 468 ~~~~~~g~~~~ 478 (968)
..|...++++.
T Consensus 288 ~lyie~~d~~~ 298 (336)
T d1b89a_ 288 NLFITEEDYQA 298 (336)
T ss_dssp HHHHHTTCHHH
T ss_pred HHHhCcchhHH
Confidence 77777777543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.27 E-value=4.6e-05 Score=68.08 Aligned_cols=120 Identities=15% Similarity=0.145 Sum_probs=73.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHccc----------CcHHHHHHHHHHhhhhcCCCCC-cchHHHH
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHV----------GLVNEGLRYFESMSTEYGLVPK-PEHYACV 739 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~----------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~l 739 (968)
|-+.+.+++|++.|++.++ +.|+.. .+..+..++... +.+++|...|++..+ +.|+ ...|..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~---l~P~~~~a~~~l 81 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH---hcchhhHHHhhH
Confidence 3445567888888888887 677644 566666666533 334566666665542 3454 4555555
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcch
Q 040643 740 VDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 817 (968)
+.+|...|++. ++... ..++++.|...++++++++|++..++..|+......+.+.+
T Consensus 82 G~~y~~~g~~~------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 82 GNAYTSFAFLT------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHHC------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHcccch------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55554443321 11111 11246789999999999999999888888877654444333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00078 Score=58.30 Aligned_cols=94 Identities=12% Similarity=0.006 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-----cchHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-----PEHYA 737 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~ 737 (968)
.+..+...|...|++++|++.|++.++ +.|+ ...+..+..++.+.|++++|.+.++.+.+...-.|. ...|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344566677777888888888888777 5665 456777777777888888888877776542111111 13455
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m 759 (968)
.+.+.+...|++++|.+.+++.
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 6667777777777777777654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.13 E-value=0.022 Score=55.92 Aligned_cols=225 Identities=11% Similarity=-0.015 Sum_probs=125.4
Q ss_pred CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 560 DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 560 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
|+..|..+...+-+.+++++|+++|++..+.|- ...+ ..|..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~---~~A~-----------------------------------~~Lg~ 42 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKE---NSGC-----------------------------------FNLGV 42 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHH-----------------------------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---HHHH-----------------------------------HHHHH
Confidence 344566666677777888888888887766542 1111 11222
Q ss_pred HHHh----cCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH--Hc
Q 040643 640 LYAK----CGSIDDAKREFLEMP-EKNEVSWNAMITGFSQ----HGYALEAINLFEKMKKHDVMPNHVTFVGVLSA--CS 708 (968)
Q Consensus 640 ~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a--~~ 708 (968)
+|.. ..+...|...+.... ..+...+..+...+.. .++.+.|...+++..+.|..+ .......... ..
T Consensus 43 ~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~-a~~~l~~~~~~~~~ 121 (265)
T d1ouva_ 43 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE-GCASLGGIYHDGKV 121 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHCSS
T ss_pred HHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh-HHHhhcccccCCCc
Confidence 2222 234444444444433 2233444444433332 346677777777776654221 1111122222 22
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGR----AGCLSRAREFTEQMPIEPDAMVWRTLLSACRV----HKN 780 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~ 780 (968)
.......+...+..... ..+...+..+...+.. ..+...+..+++...-..+...+..|...+.. .+|
T Consensus 122 ~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 122 VTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp SCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCC
T ss_pred ccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccc
Confidence 34455666666655422 2334455556665554 44555666666655323344444444433332 568
Q ss_pred hhHHHHHHHHHHccCCCCcchHHHHHHHHhh----cCCcchHHHHHHHHHhCC
Q 040643 781 MEIGEYAANHLLELEPEDSATYVLLSNIYAA----AGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g 829 (968)
.+.|....+++.+.+ ++.++..|+.+|.. ..+.++|.+..+.--+.|
T Consensus 198 ~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 198 FKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 999999999998874 67888999999986 347888999877766655
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.09 E-value=0.013 Score=57.56 Aligned_cols=219 Identities=13% Similarity=0.053 Sum_probs=102.7
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHH
Q 040643 460 VVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISL 539 (968)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 539 (968)
+..+..|...+.+.+++++|+++|++..+.|- ...+.. |..+
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~---~~A~~~-----------------------------------Lg~~ 43 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKE---NSGCFN-----------------------------------LGVL 43 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---HHHHHH-----------------------------------HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC---HHHHHH-----------------------------------HHHH
Confidence 34566677777888999999999999877652 222211 2222
Q ss_pred HHH----cCCHHHHHHHHHhCCCC-CcccHHHHHHHHHh----cCChhhHHHHHHHhhhcCCcCCcchHHHHHHHH--hh
Q 040643 540 YAR----CGRIQEAYLVFNKIDAK-DNISWNGLISGFAQ----SGYCEGALQVFSQMTQVGVQANLYTFGSVVSAA--AN 608 (968)
Q Consensus 540 y~k----~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~ 608 (968)
|.. ..+...|...+.....+ +...+..+...+.. ....+.|+..++.....|..+....+ ...... ..
T Consensus 44 y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~ 122 (265)
T d1ouva_ 44 YYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVV 122 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSS
T ss_pred HHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcc
Confidence 222 22334444444333222 22333333333332 23455566666665554432211111 011111 11
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHh----cCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----cCCHH
Q 040643 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAK----CGSIDDAKREFLEMP-EKNEVSWNAMITGFSQ----HGYAL 679 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~----~g~~~ 679 (968)
......+...+...... .+...+..|...|.. ..+...+...++... ..+..++..+...|.. ..+.+
T Consensus 123 ~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp CCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHH
T ss_pred cchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchh
Confidence 22333444444443332 233444445555543 334455555555443 2355555555544443 34667
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHcc----cCcHHHHHHHHHHh
Q 040643 680 EAINLFEKMKKHDVMPNHVTFVGVLSACSH----VGLVNEGLRYFESM 723 (968)
Q Consensus 680 ~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m 723 (968)
+|+..|++..+.| +...+..|...+.+ ..+.++|.++|+..
T Consensus 200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kA 244 (265)
T d1ouva_ 200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKG 244 (265)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHH
T ss_pred hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHH
Confidence 7777777766655 23333334443332 23556666666655
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.07 E-value=0.00093 Score=61.55 Aligned_cols=115 Identities=8% Similarity=-0.087 Sum_probs=81.1
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHK 779 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 779 (968)
...........|++++|.+.|.....-+.-.+-... ...........-++. -....|..+..++...|
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 334445778899999999999987654322211110 000111111111111 01457788888999999
Q ss_pred ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 780 NMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 780 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+.+.|...++++++++|.+...|..|+.+|...|++++|.+.++.++
T Consensus 82 ~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 82 RASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998766653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.97 E-value=0.00083 Score=66.24 Aligned_cols=124 Identities=13% Similarity=0.000 Sum_probs=78.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHH
Q 040643 674 QHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSR 751 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~e 751 (968)
..|+.++|++.|++.++ ..|+ ...+..+...++..|++++|...|+...+. .|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45777777777777777 5665 346777777777777777777777776543 555 3334444455555555555
Q ss_pred HHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 752 AREFTEQM--PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 752 A~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
+..-.... ..+|+ ...+......+...|+.+.|...++++.++.|..+..+
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 44332222 22333 23333334457778899999999999999998877653
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.93 E-value=0.00019 Score=63.95 Aligned_cols=82 Identities=15% Similarity=0.080 Sum_probs=54.5
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh----------cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 744 GRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRV----------HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 744 ~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
-|.+.+++|.+.+++. ...|+ +.+|..+..++.. .+.++.|...++++++++|+++.+|..++++|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445555555555554 33443 3444444333332 2446789999999999999999999999999998
Q ss_pred cCC-----------cchHHHHHHHH
Q 040643 812 AGK-----------WDCRDQIRQIM 825 (968)
Q Consensus 812 ~g~-----------~~~a~~~~~~m 825 (968)
.|+ |++|.+..+..
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~ka 112 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQA 112 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhcc
Confidence 875 46666654444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0015 Score=52.88 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=50.3
Q ss_pred HHHHHhhcCChHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 739 VVDLLGRAGCLSRAREFTEQM----P----IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
++..+.+.|++++|.+.+++. | ..++ +.++..|..++...|+++.|....+++++++|+++.++..+..+
T Consensus 11 lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 444455555555555444433 1 1233 66788888889999999999999999999999999888777554
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.84 E-value=0.003 Score=57.98 Aligned_cols=73 Identities=16% Similarity=0.203 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhh----hcCCCCCcch
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMST----EYGLVPKPEH 735 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~i~p~~~~ 735 (968)
....|..+...+...|++++|+..++++++ +.|. ...+..++.++...|+.++|++.|+.+.+ +.|+.|..++
T Consensus 66 ~~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 66 KVLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 345788899999999999999999999999 7885 56899999999999999999999988743 5799998664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.78 E-value=0.00068 Score=74.42 Aligned_cols=166 Identities=10% Similarity=-0.019 Sum_probs=91.6
Q ss_pred hhhHHHHHHHhhhcCCcCCcchHHHHHHHHh--hhhhHHHHHHHHHHHHHhCCC-CChhHHhHHhhHHHhcCCHHHHHHH
Q 040643 577 CEGALQVFSQMTQVGVQANLYTFGSVVSAAA--NLANIKQGKQVHAMIIKTGYD-SETEASNSLITLYAKCGSIDDAKRE 653 (968)
Q Consensus 577 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~ 653 (968)
+..+.+.++...+..-.|+..-....+..+. ..+.++.+.+.+.... ++. ++...+..+...+.+.|+.++|...
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~~~~~~~~~~A~~~ 142 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF--NVDLPCRVKSSQLGIISNKQTHTSAIVKP 142 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCChhhHHHHHHhHHHHHhCCCHHHHHHH
Confidence 4556677777666554455443333322221 1233333333322222 233 3455677788888999999999888
Q ss_pred HhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC
Q 040643 654 FLEMPEKNE-VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP 731 (968)
Q Consensus 654 f~~~~~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 731 (968)
+.....++. .++..+...+...|++++|+..|++..+ +.|+. .+|+.+...+...|+..+|..+|.+.... -+|
T Consensus 143 ~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~--l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~~ 218 (497)
T d1ya0a1 143 QSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQ--LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KFP 218 (497)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SBC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCC
Confidence 776654433 4677788899999999999999999999 78974 68999999999999999999999876432 244
Q ss_pred CcchHHHHHHHHhhcCC
Q 040643 732 KPEHYACVVDLLGRAGC 748 (968)
Q Consensus 732 ~~~~y~~lv~~l~r~G~ 748 (968)
-...+..|..+|.+..+
T Consensus 219 ~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 219 FPAASTNLQKALSKALE 235 (497)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhhh
Confidence 47778888877765443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.63 E-value=0.0021 Score=57.75 Aligned_cols=61 Identities=8% Similarity=-0.068 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC-------C----cchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPE-------D----SATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~-------~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
..|..+..++...|+++.|....++.+++.|. + ...|..++.+|...|++++|.+..+...
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666655432 1 2357889999999999999999766543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.53 E-value=0.00048 Score=67.98 Aligned_cols=118 Identities=14% Similarity=0.107 Sum_probs=87.7
Q ss_pred cccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 040643 708 SHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIG 784 (968)
Q Consensus 708 ~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 784 (968)
...|++++|+..+++..+. .|+ ...+..++.+|++.|++++|.+.++.. ...|+ ...+..+....+..+..+.+
T Consensus 7 L~~G~l~eAl~~l~~al~~---~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 4679999999999988654 676 799999999999999999999999987 67777 55665555555444433332
Q ss_pred HHHHHH-HHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 785 EYAANH-LLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 785 ~~~~~~-~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
...... .+..+|++...+...++++...|++++|.+.++...+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 222222 22335666677788899999999999999988777653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.22 E-value=0.0075 Score=53.88 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=64.7
Q ss_pred HHHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCCCC-------------hHHHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 663 VSWNAM--ITGFSQHGYALEAINLFEKMKKHDVMPN-------------HVTFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 663 ~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g~~Pd-------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
.+|..+ ...+...|++++|++.|++.++ +.|+ ...|..+..++...|++++|...++...+-+
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~ 85 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 85 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcc
Confidence 355555 3445567888888888888876 3222 2345666666666777777766665543211
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 728 GLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPD-----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 728 ~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
. +.+ ...|+ ..++..+..++...|+.+.|...+++++++.|+..
T Consensus 86 ~----------------~~~------------~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 86 N----------------RRG------------ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp H----------------HHC------------CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred c----------------ccc------------cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 0 000 11111 12445566667788888888888888888876554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.033 Score=44.40 Aligned_cols=59 Identities=14% Similarity=-0.001 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCC-------cchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 769 RTLLSACRVHKNMEIGEYAANHLLELEPED-------SATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 769 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
-.+...+...|+++.|....++++++.|.+ +.+|..|+++|.+.|++++|.+..+..-+
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 356667889999999999999999987655 34688999999999999999998666544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.17 E-value=3.1 Score=33.58 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=92.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHH
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSR 751 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~e 751 (968)
+...|..++..++..+...+. +.--|+-++--...+-+-+-..+.+++.-+-|.+.|-.. .-.+|..+.+.+...|
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~N-lk~vv~C~~~~n~~se 87 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNTLNE 87 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTCCCH
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhc-HHHHHHHHHHhcchHH
Confidence 345677888888888776521 222333333333344455566667777766666666432 3345556666555433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 752 AREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 752 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
=. .--|.....+|.-+.-+...+.+++.+.-++...+-+++.|-+.|.-.++.++.+..-++|++
T Consensus 88 ~v---------------dlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 88 HV---------------NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HH---------------HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HH---------------HHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 22 234555667788888888888888888778899999999999999999999988888788875
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.82 E-value=12 Score=38.34 Aligned_cols=246 Identities=12% Similarity=0.071 Sum_probs=123.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcC-CcCCcchHHHHHHHHhhhhhHH
Q 040643 535 ALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVG-VQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 535 ~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
..+..+.+.++++.....+..-+ .+...--....+..+.|+.++|...+..+-..| ..|+. ...++......|.+
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~~~~~~~l- 152 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSVWRASGKQ- 152 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHHHHHTTCS-
T ss_pred HHHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCCC-
Confidence 34566677788877666554322 133333345666777888888888888776655 23322 22233322222211
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC---------------------------CCHHHHH
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE---------------------------KNEVSWN 666 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---------------------------~d~~~~~ 666 (968)
+....-.-++.....|+...|..+...++. ++...-.
T Consensus 153 ----------------t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~ 216 (450)
T d1qsaa1 153 ----------------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQ 216 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHH
T ss_pred ----------------CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhH
Confidence 111111122222223333333333333221 1222222
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHCC-CCCChH-HHH-HHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 667 AMITGFSQ--HGYALEAINLFEKMKKHD-VMPNHV-TFV-GVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 667 ~li~~~~~--~g~~~~A~~l~~~m~~~g-~~Pd~~-t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
.+..++.+ ..+.+.|..++....... ..++.. ... .+.......+..+.+..++...... ..+.....-.+.
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~ 293 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVR 293 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHH
Confidence 22223222 246777777777765532 222222 122 2222334456667777777655332 223333334455
Q ss_pred HHhhcCChHHHHHHHHhCCCCCC-HHHHHH-HHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 742 LLGRAGCLSRAREFTEQMPIEPD-AMVWRT-LLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
...+.|++..+...++.|+-.|. ..-|.- +..+....|+.+.|......+-. .+ +.|=.|+.
T Consensus 294 ~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LAa 357 (450)
T d1qsaa1 294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVAA 357 (450)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHHH
T ss_pred HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHHH
Confidence 55667888888888888865443 233322 33456778888888888887764 22 36666653
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.72 E-value=1.3 Score=36.30 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
|-.|.-+|...|+++.|.+.++++++++|+|.
T Consensus 76 lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 76 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 33333344445555555555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=86.39 E-value=2.1 Score=35.64 Aligned_cols=76 Identities=7% Similarity=-0.067 Sum_probs=34.7
Q ss_pred CHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcc----cCcHHHH
Q 040643 646 SIDDAKREFLEMP-EKNEVSWNAMITGFSQ----HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH----VGLVNEG 716 (968)
Q Consensus 646 ~~~~A~~~f~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a 716 (968)
+.++|.+.|++.. ..++.+...|...|.. ..+.++|+++|++..+.| +......|...+.+ ..+.++|
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHH
Confidence 3444444444433 2233333333333332 234566666666666654 22222333333332 3456666
Q ss_pred HHHHHHhh
Q 040643 717 LRYFESMS 724 (968)
Q Consensus 717 ~~~~~~m~ 724 (968)
.++|+...
T Consensus 115 ~~~~~~Aa 122 (133)
T d1klxa_ 115 VKTFEKAC 122 (133)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666553
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=85.04 E-value=5.1 Score=33.04 Aligned_cols=79 Identities=11% Similarity=0.004 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHh----cCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----cCCHHHH
Q 040643 611 NIKQGKQVHAMIIKTGYDSETEASNSLITLYAK----CGSIDDAKREFLEMP-EKNEVSWNAMITGFSQ----HGYALEA 681 (968)
Q Consensus 611 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~----~g~~~~A 681 (968)
+.+++...+....+.| ++.....|..+|.. ..+.++|.+.|++.. ..++.+...|...|.. ..+.++|
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A 114 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQA 114 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHH
Confidence 4445555554444443 22333334444432 233455555555443 2233333334333332 2345555
Q ss_pred HHHHHHHHHCC
Q 040643 682 INLFEKMKKHD 692 (968)
Q Consensus 682 ~~l~~~m~~~g 692 (968)
+++|++..+.|
T Consensus 115 ~~~~~~Aa~~G 125 (133)
T d1klxa_ 115 VKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHCC
Confidence 55555555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.01 E-value=1.6 Score=35.56 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 040643 712 LVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD 764 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~ 764 (968)
++++|+.+|+...+. .|. .+.+--+.-++.+.|++++|.+.++.+ .++|+
T Consensus 53 d~~~gI~lLe~~~~~---~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 53 DERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 345666666655432 232 233334445566666666666666655 45555
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=84.37 E-value=8.8 Score=30.87 Aligned_cols=83 Identities=11% Similarity=0.046 Sum_probs=64.0
Q ss_pred HhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHH
Q 040643 642 AKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFE 721 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~ 721 (968)
.+|+++.....-|-.+... ..-.+.-+....+.|+-++-.+++..+.+. -+|++.....+.+||.+.|...++-+++.
T Consensus 67 s~C~Nlk~vv~C~~~~n~~-se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~ 144 (161)
T d1wy6a1 67 DKCQNLKSVVECGVINNTL-NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLI 144 (161)
T ss_dssp GGCSCTHHHHHHHHHTTCC-CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhcHHHHHHHHHHhcch-HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 5778887777776665533 334556678888999999999999987774 48888888999999999999999999988
Q ss_pred Hhhhh
Q 040643 722 SMSTE 726 (968)
Q Consensus 722 ~m~~~ 726 (968)
+..+.
T Consensus 145 ~ACe~ 149 (161)
T d1wy6a1 145 EACKK 149 (161)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 87654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.77 E-value=4.4 Score=30.98 Aligned_cols=64 Identities=13% Similarity=0.250 Sum_probs=49.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 756 TEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 756 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
+-.+.+.|++.+..+-|.|||.-+|+..|.++.+-+-..--.+.+.|-.+. .+++-.+.+-|+.
T Consensus 32 l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil------------qelkptl~ELGI~ 95 (105)
T d1v54e_ 32 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGIS 95 (105)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH------------HHHhhHHHHhCCC
Confidence 334578899999999999999999999999999988766533455554432 4677777777774
|