Citrus Sinensis ID: 040660

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------
Protein Sequence
MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLELAMAINASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEARLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHccccHHHHHHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHccccccHHHHHHHcccccccccccccccHHHcHHHHcccHHHHHHHHHccccccccccccccEEEEccccHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccEEEEEcccccEEEEccccHHHHHHHHHHHHHccccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHHHHHccccHccccHHHHHHcccccccHcccccccccHccccEHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccEEEEEEcccccEEEcccccHHHHHHHHHHHHHcccccccEEEcEcEEEEEEEc
Coil and Loop (DISEMBL)
MGLQQSKEELLYQQVNYGNVEGIKALCRdgaglewidkegktpliaacmnpglYDVAKTLIELGAkvdayrpgrhggtplhhAAKRGLERTVKLLLSYGAnalvlnddcqtplevaraKGFTNVVRAIENHICIFSgwlrelygpgflelLAPQLLSRKVWVAVlptgsrnptkpfklELAIYPSLLDARPRMVIALWKAnleepkfqhsdpsvtivdnstiprgrrrrRRCRTQIIRQTRIKLAAANESDKQQLQAFCNAckgipqvnpaflhnpqshavqataptpaeDLELAMAINASIQTAIaetpicdpqpssgataastswnnsgqgasaapspskasssqwvmhearlsghssqqtqiqnnnmpatktmihsldtipsappvtdeitedgpvqypsidvgpvdvsspsieqlpcskskvkgdkdatsscvicldapvegacvpcghmagcmsclnevkakkwgcpvcranISQVIRLYAV
Flexible Loop (DISEMBL)
MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPtgsrnptkpfklELAIYPSLLDARPRMVIALWKANLEepkfqhsdpsvtivdnstiprgrrrrrrcrtqiirqtriklaaaneSDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLELAMAINASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEARLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQLpcskskvkgdkdaTSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKakkwgcpvcranisqvirlyav
Low Complexity Region (SEG)
MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNStiprgrrrrrrcrtqiirqtriKLAAANESDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLELAMAINASIQTAIAETPICDPQPSSGATAASTSWNNsgqgasaapspskasssqWVMHEARLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV
Disordered region (IsUnstruct)
*********LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLE****************************CRTQIIRQTRIKLAAA******QLQAFCNACKGIPQVNPAFLH******************ELAMAINASIQTAIA*******************************************************************************************************************************SCVICLDAPVEGACV**************************************
Disordered Region (DISOPRED)
MG*QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVNPAFLH*********************************************************************************************************************EITEDGPVQYPSIDVGPV***************************VICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV
Disordered Region (DISEMBL)
MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNST********RRCRTQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLELAMAINASIQTAIAETPICD***********************************VMHEA***********IQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQLP*************SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV
Disordered Region (DISPRO)
******KEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLELAMAINASIQTAIAETPICDP*******************************************************M*ATKT*****DTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPS*****************TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLELAMAINASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEARLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	487	2.2.26 [Sep-21-2011]
Q4FE47	462	Putative E3 ubiquitin-pro	yes	no	0.928	0.978	0.579	1e-153
Q7XI08	513	Probable E3 ubiquitin-pro	yes	no	0.958	0.910	0.508	1e-135
Q9FPH0	376	Putative E3 ubiquitin-pro	no	no	0.640	0.829	0.572	1e-95
Q6UB99	2663	Ankyrin repeat domain-con	yes	no	0.236	0.043	0.406	5e-12
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.240	0.342	0.375	2e-11
O75179	2603	Ankyrin repeat domain-con	no	no	0.227	0.042	0.362	8e-09
Q99NH0	2603	Ankyrin repeat domain-con	no	no	0.227	0.042	0.362	9e-09
Q6UB98	2062	Ankyrin repeat domain-con	no	no	0.217	0.051	0.412	9e-09
Q53RE8	183	Ankyrin repeat domain-con	no	no	0.262	0.699	0.330	1e-08
Q9J4Z4	592	Putative ankyrin repeat p	N/A	no	0.160	0.131	0.457	1e-08

>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana GN=XBAT35 PE=2 SV=1

 Score =  543 bits (1399), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 288/497 (57%), Positives = 348/497 (70%), Gaps = 45/497 (9%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK ELLYQQV+YGN EGI+AL RDG  LEW+D+EGKTPLI ACMN  L+DVAKTL
Sbjct: 1   MGQQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELG+ V+AYRPGRH GTPLHHAAKRGLE TVKLLLS+GAN LVLNDDCQTPLEVAR KG
Sbjct: 61  IELGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
           F+NVVRAIE HIC+FSGW+RE YGP FL+L APQLLSR+VWV ++PTGSRNPTKPFKLEL
Sbjct: 121 FSNVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRC-------R 233
            +Y SL DA+PR V+ LWKANLEEPK + SD SV IVDNSTIP  R ++RR        R
Sbjct: 181 VVYASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNSTIPSRRMKKRRVCASHGRRR 240

Query: 234 TQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLE 293
            Q++RQTR+K A + E D QQL+ FC+ACKGIPQ     +H P       +AP P  +  
Sbjct: 241 PQVVRQTRLKFAPSTEGDSQQLKWFCDACKGIPQP----MHPPVFLQAPPSAPPPPSEDG 296

Query: 294 LAMAINASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEA 353
           LAM +NAS+ T ++     DP        ++ + ++ GQ +S++     +SS+     +A
Sbjct: 297 LAMGMNASLHTTMS-----DP--------SNLNHHSIGQASSSS---GPSSSTAPPSGKA 340

Query: 354 RLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDE---ITEDGPVQYPSIDVGPVD 410
              G +S    I              L++ PSAPP+TD+     +DGP+ YPSID  PVD
Sbjct: 341 SAFGFNSHGIGI-------------VLESSPSAPPLTDDDIATVDDGPIHYPSIDSTPVD 387

Query: 411 VSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWG 470
           +  PS   LP S    + +   T +C ICLDAP E  CVPCGH+AGCMSCL E+K+K WG
Sbjct: 388 L--PSAASLPASTEGERKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWG 445

Query: 471 CPVCRANISQVIRLYAV 487
           CPVCRA I QVI+LY V
Sbjct: 446 CPVCRAKIDQVIKLYRV 462

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp. japonica GN=XBOS34 PE=2 SV=1

 Score =  483 bits (1244), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 271/533 (50%), Positives = 334/533 (62%), Gaps = 66/533 (12%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MGLQQSKEEL+YQQVNYGN +GI+AL   GAGLEWIDKEGKTPL+ A M P L +V + L
Sbjct: 1   MGLQQSKEELVYQQVNYGNADGIRALRAQGAGLEWIDKEGKTPLMVASMRPDLINVVQVL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELGA V+AYRPG + GT LHHAAK+GLE+TV LLLS+GAN  + NDDC T L++AR KG
Sbjct: 61  IELGANVNAYRPGSYCGTALHHAAKKGLEQTVHLLLSHGANPFITNDDCHTALDLAREKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
             NVVRAIE  I +F GW+RE YGPGFLE  APQ L+RK+W  +LP  +RN T+P KLEL
Sbjct: 121 HVNVVRAIEGRISLFCGWMRENYGPGFLEAFAPQFLTRKIWAVILPREARNQTRPLKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQT 240
            IYP L  ++P+ VI LWK  LEEPKF  ++PSVTI D  T                 +T
Sbjct: 181 TIYPELQASKPQAVIKLWKCQLEEPKFNQANPSVTIFDKGT-----------------RT 223

Query: 241 RIKLAAANESDKQQLQAFCNACKGIPQVNP--------AFLHNPQS-HAVQATAPTPA-E 290
           R KL    E DKQQLQ F +AC GIPQV          A L NP S  ++ +   TP+ E
Sbjct: 224 RYKLLPVCEGDKQQLQWFYSACCGIPQVASMVPAQPANAPLPNPSSASSLPSVISTPSKE 283

Query: 291 DLELAMAINASIQTAIAETPICDPQPSSGATAASTSWNN------SGQGASAAPSPSKAS 344
           D ELAMAINASI +AIAE  + D QP +  T A+  W N      +G G     +PSK S
Sbjct: 284 DAELAMAINASILSAIAEG-VPDVQPIT-TTTATNDWGNPPSNSLNGWGPPDTSAPSKTS 341

Query: 345 S------------SQWVMHEARLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDE 392
                        + W +        SS+  + QN+     +  + SL  +P+APP+   
Sbjct: 342 GQVPVVTSSSSTYNGWDVPGTSSGQSSSKHNKSQNSTFVVPQEALPSL-PVPTAPPLAVG 400

Query: 393 ITEDGPVQYPSIDVGPVDVSSPSIEQLPCSKSK-----------VKGDKDATSS------ 435
              DGP+QYPSID  PVDV+ PS +      S             + D +A++S      
Sbjct: 401 TFYDGPIQYPSIDSTPVDVTMPSADGGTAVSSAKPAENEGDAKPAESDANASNSGNTPPG 460

Query: 436 -CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV 487
            CVICLDAPVEGAC+PCGHMAGCMSCL ++++KKWGCP+CRA I+Q+IRLYAV
Sbjct: 461 TCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 513

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FPH0|XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT34 OS=Arabidopsis thaliana GN=XBAT34 PE=2 SV=1

 Score =  350 bits (898), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 186/325 (57%), Positives = 232/325 (71%), Gaps = 13/325 (4%)

Query: 1   MGLQQS--KEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAK 58
           MG QQS  K+E+L+Q+V+  NVEGIK+L  +GAGLE +DK G+TPLI AC N  LYDVAK
Sbjct: 1   MGQQQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVAK 60

Query: 59  TLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA 118
           TL+ELG+ V+AYR G +GGTPLHHAAKRGL  TVKLLLS+GAN LVL+DD +T LEVAR 
Sbjct: 61  TLLELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVARD 120

Query: 119 KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKL 178
           +G++NVVRAIE+HIC+FSG +RE  G   L L APQLLSRKVWV V+PTGSRNPTKP KL
Sbjct: 121 EGYSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLKL 180

Query: 179 ELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRR-------- 230
           EL +Y S+ DA+PRMVI LWKANLEEPK    D SV I+D+S  P+  R+RR        
Sbjct: 181 ELVLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDSRSPKSMRQRRESGFISQA 240

Query: 231 RCRTQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQ-VN-PAFLHNPQSHAVQATAPTP 288
           R   Q+ RQ R+KLAA  + D +Q+  F  ACKG+PQ +N P F+   Q+       P  
Sbjct: 241 RRWAQVDRQIRLKLAAEIKGDMKQMNWFSEACKGVPQPMNPPRFMKTSQATTTTTNVPAL 300

Query: 289 AEDLELAMAINA-SIQTAIAETPIC 312
           ++D    +A++  S +TA  E  +C
Sbjct: 301 SDDALTRVAMSLPSPKTANKEDGLC 325

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6UB99|ANR11_HUMAN Ankyrin repeat domain-containing protein 11 OS=Homo sapiens GN=ANKRD11 PE=1 SV=3

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 62/118 (52%), Gaps = 3/118 (2%)

Query: 8   EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
           E  L++    G+   IK L  +GA +   D  G T L  AC N G YDVAK L+  GA+V
Sbjct: 169 ETRLHRAAIRGDARRIKELISEGADVNVKDFAGWTALHEAC-NRGYYDVAKQLLAAGAEV 227

Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
           +    G    TPLH AA  G  + VKLLL YG N    N   +TPL+VA +    N++
Sbjct: 228 NTK--GLDDDTPLHDAANNGHYKVVKLLLRYGGNPQQSNRKGETPLKVANSPTMVNLL 283

May recruit HDACs to the p160 coactivators/nuclear receptor complex to inhibit ligand-dependent transactivation.

Homo sapiens (taxid: 9606)

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 67/120 (55%), Gaps = 3/120 (2%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           +++Q  + G+VEG+KA    G   +  D EG+T L  AC   G    A+ LI+ GA V+A
Sbjct: 221 IVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGELKCAQVLIDAGASVNA 279

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
               ++  TPLH+AA  G +  V LLL  GA   + N D +TP++VA+      VV+ +E
Sbjct: 280 VDKNKN--TPLHYAAGYGRKECVSLLLENGAAVTLQNLDEKTPIDVAKLNSQLEVVKLLE 337

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.

Arabidopsis thaliana (taxid: 3702)

>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens GN=ANKRD17 PE=1 SV=3

 Score = 62.4 bits (150), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 18   GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
            G+ E ++ L   GA +E  DK+G TPLI A    G   V + L++ GA ++A +  R   
Sbjct: 1094 GHEELVQTLLERGASIEHRDKKGFTPLILAA-TAGHVGVVEILLDNGADIEA-QSERTKD 1151

Query: 78   TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
            TPL  A   G +  V+LLL+ GAN    N    TPL +A + G+ N+++ + N
Sbjct: 1152 TPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLN 1204

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification (By similarity). Target of enterovirus 71 which is the major etiological agent of HFMD (hand, foot and mouth disease).

Homo sapiens (taxid: 9606)

>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus GN=Ankrd17 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 18   GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
            G+ E ++ L   GA +E  DK+G TPLI A    G   V + L++ GA ++A +  R   
Sbjct: 1090 GHEELVQTLLERGASIEHRDKKGFTPLILAA-TAGHVGVVEILLDNGADIEA-QSERTKD 1147

Query: 78   TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
            TPL  A   G +  V+LLL+ GAN    N    TPL +A + G+ N+++ + N
Sbjct: 1148 TPLSLACSGGRQEVVELLLARGANKEHRNVSDYTPLSLAASGGYVNIIKILLN 1200

Earliest specific in situ marker of hepatic differentiation during embryogenesis, useful for characterization of inductive events involved in hepatic specification.

Mus musculus (taxid: 10090)

>sp|Q6UB98|ANR12_HUMAN Ankyrin repeat domain-containing protein 12 OS=Homo sapiens GN=ANKRD12 PE=1 SV=3

 Score = 62.0 bits (149), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 45/109 (41%), Positives = 56/109 (51%), Gaps = 3/109 (2%)

Query: 8   EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
           E  L+     G+V+ +K L   GA +   D  G TPL  AC N G YDVAK LI  GA V
Sbjct: 186 ETPLHMAAIRGDVKQVKELISLGANVNVKDFAGWTPLHEAC-NVGYYDVAKILIAAGADV 244

Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           +    G    TPLH +A  G    VKLLL +G N    N   + P++VA
Sbjct: 245 NT--QGLDDDTPLHDSASSGHRDIVKLLLRHGGNPFQANKHGERPVDVA 291

May recruit HDACs to the p160 coactivators/nuclear receptor complex to inhibit ligand-dependent transactivation.

Homo sapiens (taxid: 9606)

>sp|Q53RE8|ANR39_HUMAN Ankyrin repeat domain-containing protein 39 OS=Homo sapiens GN=ANKRD39 PE=1 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 8/136 (5%)

Query: 1   MGLQQSKEELLYQQVNY-----GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYD 55
           +G+QQ+ EE+ +++  +     G++  +K L +        D  G T L  A  N G Y 
Sbjct: 20  LGVQQTLEEMDFERGIWSAALNGDLGRVKHLIQKAEDPSQPDSAGYTALHYASRN-GHYA 78

Query: 56  VAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115
           V + L+E GAK DA   G  G T LH A+  G     +LLLS+G+N  V++DD  T L  
Sbjct: 79  VCQFLLESGAKCDAQTHG--GATALHRASYCGHTEIARLLLSHGSNPRVVDDDGMTSLHK 136

Query: 116 ARAKGFTNVVRAIENH 131
           A  +G  ++   +  H
Sbjct: 137 AAERGHGDICSLLLQH 152

Homo sapiens (taxid: 9606)

>sp|Q9J4Z4|V246_FOWPN Putative ankyrin repeat protein FPV246 OS=Fowlpox virus (strain NVSL) GN=FPV246 PE=4 SV=1

 Score = 61.6 bits (148), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 18  GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
           G+VE + AL   G+ ++  D  G TPL+ AC N    D++K LIE GA  D      HG 
Sbjct: 300 GSVETVNALISYGSTVDIKDNIGSTPLMHACGNK---DISKLLIEKGA--DPNISNIHGY 354

Query: 78  TPLHHAAKRGLERTVKLLLSYGA 100
           TPLH+AA  G    V LLLSYG 
Sbjct: 355 TPLHNAAAYGSVDVVNLLLSYGV 377

Vertebrata (taxid: 7742)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
224099913	442	predicted protein [Populus trichocarpa]	0.903	0.995	0.652	1e-173
147799985	500	hypothetical protein VITISV_013890 [Viti	0.983	0.958	0.647	1e-172
224112583	444	predicted protein [Populus trichocarpa]	0.907	0.995	0.635	1e-171
449520633	459	PREDICTED: putative E3 ubiquitin-protein	0.938	0.995	0.611	1e-165
449432546	459	PREDICTED: putative E3 ubiquitin-protein	0.938	0.995	0.611	1e-165
18403707	462	putative E3 ubiquitin-protein ligase XBA	0.928	0.978	0.579	1e-152
224101655	455	predicted protein [Populus trichocarpa]	0.911	0.975	0.584	1e-151
21593715	462	unknown [Arabidopsis thaliana]	0.928	0.978	0.579	1e-151
297831072	462	zinc finger family protein [Arabidopsis	0.924	0.974	0.571	1e-151
30686999	438	putative E3 ubiquitin-protein ligase XBA	0.893	0.993	0.567	1e-144

>gi|224099913|ref|XP_002311673.1| predicted protein [Populus trichocarpa] gi|222851493|gb|EEE89040.1| predicted protein [Populus trichocarpa]

 Score =  613 bits (1582), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 319/489 (65%), Positives = 371/489 (75%), Gaps = 49/489 (10%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK+ELLYQQVNYGN+ GIK LC  GAGLEWIDKEGKTPLI AC+NP L+DVA+TL
Sbjct: 1   MGQQQSKDELLYQQVNYGNIGGIKTLCSQGAGLEWIDKEGKTPLILACLNPQLFDVAQTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELGA VDAYRPGR+ GTPLHHAAKRGLE TVKLLLS GANALV NDDCQTPL+VARAKG
Sbjct: 61  IELGANVDAYRPGRNAGTPLHHAAKRGLENTVKLLLSRGANALVTNDDCQTPLQVARAKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
            + VVRAIE+HIC+FSGWLRE YGPGFLE+LAP+L+SR VWV VLPTGSRNP +P+KLEL
Sbjct: 121 HSIVVRAIESHICLFSGWLREFYGPGFLEVLAPRLVSRDVWVVVLPTGSRNPRRPYKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQT 240
           AIY  L DA+PR ++ALWKANLEE KF HSDPSV IVDNST                 +T
Sbjct: 181 AIYSRLQDAQPRTIVALWKANLEEMKFHHSDPSVMIVDNST-----------------KT 223

Query: 241 RIKLAAANESDKQQLQAFCNACKGIPQVN--PAFLHNPQSHAVQATAPTPAEDLELAMAI 298
           +IKLA ANESDKQQLQ FC+ACKGI QV   PAFLHN Q+ AVQATAP  AED+E+AMA+
Sbjct: 224 QIKLAPANESDKQQLQWFCDACKGIQQVMHPPAFLHNSQAPAVQATAPPSAEDIEIAMAM 283

Query: 299 NASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEARLSGH 358
           NA IQ+A AE PI DP  S+GA+++++                              +  
Sbjct: 284 NAYIQSA-AERPIFDPHSSAGASSSTSW----------------------------TTSS 314

Query: 359 SSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQ 418
           S+QQT+IQN+++   +T   + D++PSAPP+ DEI EDGP+ YPSID  P+D SS S+E 
Sbjct: 315 STQQTKIQNSSIADVQTATDAQDSVPSAPPIVDEIVEDGPIHYPSIDSSPIDTSSLSVEN 374

Query: 419 LPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478
           LP   +  K +   +SSCVICLDA VEGAC+PCGHMAGCMSCL E+KAKKWGCPVCRA I
Sbjct: 375 LP-ENTGEKREDGGSSSCVICLDALVEGACIPCGHMAGCMSCLKEIKAKKWGCPVCRAKI 433

Query: 479 SQVIRLYAV 487
            QV+RLYAV
Sbjct: 434 DQVVRLYAV 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799985|emb|CAN72662.1| hypothetical protein VITISV_013890 [Vitis vinifera]

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 329/508 (64%), Positives = 385/508 (75%), Gaps = 29/508 (5%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK+ELL+QQV YGNVEGIKAL R+GAGLEW D+EGKTPLI ACM   L++VAKTL
Sbjct: 1   MGQQQSKDELLHQQVVYGNVEGIKALSREGAGLEWTDREGKTPLIVACMFSELFNVAKTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELGA V+AYRPGRH GTPLHHAAK+GLE TV LLLS+GANALV+NDDCQT L+VARAKG
Sbjct: 61  IELGANVNAYRPGRHAGTPLHHAAKKGLEETVNLLLSHGANALVMNDDCQTALDVARAKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
            + VVR IE+HIC+FSGWLRE YGPGFLE+LAPQ +SRKVWV +LP GSR PTKPFKLEL
Sbjct: 121 HSRVVRVIESHICLFSGWLREFYGPGFLEVLAPQWVSRKVWVVILPCGSRKPTKPFKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGR-------RRRRRCR 233
           AIY SL DA+PR  IALWKAN++E KF+  DP+V I+DNSTI RGR        R  RC+
Sbjct: 181 AIYSSLQDAQPRTTIALWKANMDEAKFEDPDPAVIILDNSTISRGRRRRRCYTSREARCK 240

Query: 234 TQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVN--PAFLHNPQSHAVQATAPTPAED 291
            + +RQT+IKLA   +SD QQLQ FCNACKGIPQ    PAFLHN Q+ AV  TAP  AED
Sbjct: 241 PRALRQTQIKLAPEKKSDSQQLQWFCNACKGIPQAMHPPAFLHNAQTPAVPPTAPPTAED 300

Query: 292 LELAMAINASIQTAIAETPICDPQPSSGATAASTSWNNSGQ-------GASAAP---SPS 341
           LELAMAINASIQ+A+ E P     PSS    ASTSWNNS          A  AP   + S
Sbjct: 301 LELAMAINASIQSAMQEGPPLLDSPSSFENGASTSWNNSVNITNHNCPDALVAPVAPASS 360

Query: 342 KASSSQWVMHEARLSGHSSQQTQIQNN--NMPATKTMIHSLDTIPSAPPVTDEITEDGPV 399
           KASSS+ V+HEA  S +S+Q  QI+ +  ++P   +         SAPP+ DE+ +DGPV
Sbjct: 361 KASSSECVVHEAGPSTNSTQHIQIETHIPDIPVQASTA-------SAPPIADEVVDDGPV 413

Query: 400 QYPSIDVGPVDVSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMS 459
           QYPSID  PVD++SP+ E    +  + K +  A SSCVICLDAP+EGAC+PCGHMAGCMS
Sbjct: 414 QYPSIDSSPVDLTSPAFETSAAASEQSK-EGGAASSCVICLDAPIEGACIPCGHMAGCMS 472

Query: 460 CLNEVKAKKWGCPVCRANISQVIRLYAV 487
           CLNE+KAKKWGCPVCRA I QV++LY+V
Sbjct: 473 CLNEIKAKKWGCPVCRAKIDQVVKLYSV 500

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112583|ref|XP_002332748.1| predicted protein [Populus trichocarpa] gi|222833076|gb|EEE71553.1| predicted protein [Populus trichocarpa]

 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 311/489 (63%), Positives = 370/489 (75%), Gaps = 47/489 (9%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK+ELLYQQVN  N+EGIK LCR+GA LEWIDKEGKTPLI AC+NP L++VAKTL
Sbjct: 1   MGQQQSKDELLYQQVNCSNIEGIKNLCREGARLEWIDKEGKTPLIVACLNPQLFNVAKTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELGA V+AYRPGR+GG PLHHAAKRGLE TVKLLLS+GANAL++NDDCQTPLEVARAKG
Sbjct: 61  IELGANVNAYRPGRNGGAPLHHAAKRGLENTVKLLLSHGANALMMNDDCQTPLEVARAKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
           + NVVRAIE+HIC+FSGWLRE YGPGFLE+LAP+L+SR +WV VLPTGSR+P  P+KLEL
Sbjct: 121 YGNVVRAIESHICLFSGWLREFYGPGFLEVLAPRLVSRNIWVVVLPTGSRSPRMPYKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQT 240
           AIY  L DA+P  +IALWKANLE+PKF H+DP+V IVDNST                 +T
Sbjct: 181 AIYSRLQDAQPHTIIALWKANLEQPKFHHADPTVMIVDNST-----------------KT 223

Query: 241 RIKLAAANESDKQQLQAFCNACKGIPQVN--PAFLHNPQSHAVQATAPTPAEDLELAMAI 298
           R+KLA ANE DKQQLQ FC+ACKGIPQV   P FL   Q+ AVQATAP   ED E+AMAI
Sbjct: 224 RLKLAPANERDKQQLQWFCDACKGIPQVMHPPEFLSKSQNLAVQATAPPSDEDPEIAMAI 283

Query: 299 NASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEARLSGH 358
           NASIQ+A+ E PI D   S+GA+++++                              SG 
Sbjct: 284 NASIQSAMVEQPISDTHSSTGASSSTS---------------------------CVSSGS 316

Query: 359 SSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQ 418
           S+QQT+I N+++   +T   + D++PSAPP+ DE+ EDGP+ YPSID  P+D+SS  IE 
Sbjct: 317 STQQTKILNSSVADVQTATDAQDSVPSAPPIVDELIEDGPIHYPSIDSSPLDISSLPIEN 376

Query: 419 LPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478
           LP +  + K D   +SSCVICLDAPVEGAC+PCGHM GCMSCL E+KAKKWGCPVCRA I
Sbjct: 377 LPENTGEKKED-GGSSSCVICLDAPVEGACIPCGHMVGCMSCLKEIKAKKWGCPVCRATI 435

Query: 479 SQVIRLYAV 487
           +QV+RLYAV
Sbjct: 436 NQVVRLYAV 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520633|ref|XP_004167338.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT35-like [Cucumis sativus]

 Score =  587 bits (1513), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 299/489 (61%), Positives = 362/489 (74%), Gaps = 32/489 (6%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK+ELLYQQV+YGN EGIKALCRDGAGLEWIDKE KTPLI ACMNP L++VA+TL
Sbjct: 1   MGQQQSKDELLYQQVSYGNTEGIKALCRDGAGLEWIDKEAKTPLIVACMNPELHNVARTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELGA V+AYRPGRH GTPLHHAAKRGLE  VKLLLS GAN L++NDDCQ+PL+VARAKG
Sbjct: 61  IELGANVNAYRPGRHNGTPLHHAAKRGLENNVKLLLSNGANPLIMNDDCQSPLDVARAKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
            +NVVR IE+HIC+FSGWLRE YGPGFLELLAPQL+SRKVW  +LP G+RN +KPFKLEL
Sbjct: 121 HSNVVRTIESHICLFSGWLREFYGPGFLELLAPQLVSRKVWAVILPCGARNLSKPFKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQT 240
           AIY SL DA+PR V+ LWKA+L++ K QHSDPSV IVDN+                  +T
Sbjct: 181 AIYTSLQDAQPRTVVQLWKADLDQSKLQHSDPSVMIVDNAA-----------------KT 223

Query: 241 RIKLAAANESDKQQLQAFCNACKGI-PQVNPAFLHNPQSHAVQATAPTPAEDLELAMAIN 299
           R+KLA+ NE+DK+QLQ FCNACKGI   ++P F+       V ATAP  +ED+ELAMAIN
Sbjct: 224 RLKLASGNENDKEQLQWFCNACKGITSMMHPTFMSGNHGPGVSATAPPDSEDVELAMAIN 283

Query: 300 ASIQTAI-AETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEARLSGH 358
           ASIQ+ I    P  DP PSS A+ +S+     GQ   +    +K  +++  M+EA  S  
Sbjct: 284 ASIQSVIHGRPPFPDPNPSSEASTSSSHTGPVGQTTHS----TKLGTNESEMNEAGQSIT 339

Query: 359 SSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQ 418
           +++  QIQ N  P         D +PSAP   DEI ++G + YPSID  P+D+SS +   
Sbjct: 340 ANEHPQIQTNVTPP--------DAVPSAPLAADEILDNGAIHYPSIDSSPIDLSSQTAHN 391

Query: 419 LPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478
            P    + K D+ ++SSCVICLDAPV+GAC+PCGHMAGCM+CL E+K+KKWGCPVCRA I
Sbjct: 392 APLQAGEGK-DETSSSSCVICLDAPVQGACIPCGHMAGCMNCLTEIKSKKWGCPVCRAKI 450

Query: 479 SQVIRLYAV 487
            QV+RLYAV
Sbjct: 451 DQVVRLYAV 459

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432546|ref|XP_004134060.1| PREDICTED: putative E3 ubiquitin-protein ligase XBAT35-like [Cucumis sativus]

 Score =  587 bits (1512), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 299/489 (61%), Positives = 362/489 (74%), Gaps = 32/489 (6%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK+ELLYQQV+YGN EGIKALCRDGAGLEWIDKE KTPLI ACMNP L++VA+TL
Sbjct: 1   MGQQQSKDELLYQQVSYGNTEGIKALCRDGAGLEWIDKEAKTPLIVACMNPELHNVARTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELGA V+AYRPGRH GTPLHHAAKRGLE  VKLLLS GAN L++NDDCQ+PL+VARAKG
Sbjct: 61  IELGANVNAYRPGRHNGTPLHHAAKRGLENNVKLLLSNGANPLIMNDDCQSPLDVARAKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
            +NVVR IE+HIC+FSGWLRE YGPGFLELLAPQL+SRKVW  +LP G+RN +KPFKLEL
Sbjct: 121 HSNVVRTIESHICLFSGWLREFYGPGFLELLAPQLVSRKVWAVILPCGARNLSKPFKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQT 240
           AIY SL DA+PR V+ LWKA+L++ K QHSDPSV IVDN+                  +T
Sbjct: 181 AIYTSLQDAQPRTVVQLWKADLDQSKLQHSDPSVMIVDNAA-----------------KT 223

Query: 241 RIKLAAANESDKQQLQAFCNACKGI-PQVNPAFLHNPQSHAVQATAPTPAEDLELAMAIN 299
           R+KLA+ NE+DK+QLQ FCNACKGI   ++P F+       V ATAP  +ED+ELAMAIN
Sbjct: 224 RLKLASGNENDKEQLQWFCNACKGITSMMHPTFMSGNHGPGVSATAPPDSEDVELAMAIN 283

Query: 300 ASIQTAI-AETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEARLSGH 358
           ASIQ+ I    P  DP PSS A+ +S+     GQ   +    +K  +++  M+EA  S  
Sbjct: 284 ASIQSVIHGRPPFPDPNPSSEASTSSSHTGPVGQTTHS----TKLGTNESEMNEAGQSIT 339

Query: 359 SSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQ 418
           +++  QIQ N  P         D +PSAP   DEI ++G + YPSID  P+D+SS +   
Sbjct: 340 ANEHPQIQTNVTPP--------DAVPSAPLAADEILDNGAIHYPSIDSSPIDLSSQTAHN 391

Query: 419 LPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478
            P    + K D+ ++SSCVICLDAPV+GAC+PCGHMAGCM+CL E+K+KKWGCPVCRA I
Sbjct: 392 APLQAGEGK-DEMSSSSCVICLDAPVQGACIPCGHMAGCMNCLTEIKSKKWGCPVCRAKI 450

Query: 479 SQVIRLYAV 487
            QV+RLYAV
Sbjct: 451 DQVVRLYAV 459

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403707|ref|NP_566724.1| putative E3 ubiquitin-protein ligase XBAT35 [Arabidopsis thaliana] gi|122233562|sp|Q4FE47.1|XB35_ARATH RecName: Full=Putative E3 ubiquitin-protein ligase XBAT35; AltName: Full=Ankyrin repeat domain and RING finger-containing protein XBAT35; AltName: Full=Protein XB3 homolog 5 gi|70905085|gb|AAZ14068.1| At3g23280 [Arabidopsis thaliana] gi|332643225|gb|AEE76746.1| putative E3 ubiquitin-protein ligase XBAT35 [Arabidopsis thaliana]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/497 (57%), Positives = 348/497 (70%), Gaps = 45/497 (9%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK ELLYQQV+YGN EGI+AL RDG  LEW+D+EGKTPLI ACMN  L+DVAKTL
Sbjct: 1   MGQQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELG+ V+AYRPGRH GTPLHHAAKRGLE TVKLLLS+GAN LVLNDDCQTPLEVAR KG
Sbjct: 61  IELGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
           F+NVVRAIE HIC+FSGW+RE YGP FL+L APQLLSR+VWV ++PTGSRNPTKPFKLEL
Sbjct: 121 FSNVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRC-------R 233
            +Y SL DA+PR V+ LWKANLEEPK + SD SV IVDNSTIP  R ++RR        R
Sbjct: 181 VVYASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNSTIPSRRMKKRRVCASHGRRR 240

Query: 234 TQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLE 293
            Q++RQTR+K A + E D QQL+ FC+ACKGIPQ     +H P       +AP P  +  
Sbjct: 241 PQVVRQTRLKFAPSTEGDSQQLKWFCDACKGIPQP----MHPPVFLQAPPSAPPPPSEDG 296

Query: 294 LAMAINASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEA 353
           LAM +NAS+ T ++     DP        ++ + ++ GQ +S++     +SS+     +A
Sbjct: 297 LAMGMNASLHTTMS-----DP--------SNLNHHSIGQASSSS---GPSSSTAPPSGKA 340

Query: 354 RLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDE---ITEDGPVQYPSIDVGPVD 410
              G +S    I              L++ PSAPP+TD+     +DGP+ YPSID  PVD
Sbjct: 341 SAFGFNSHGIGI-------------VLESSPSAPPLTDDDIATVDDGPIHYPSIDSTPVD 387

Query: 411 VSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWG 470
           +  PS   LP S    + +   T +C ICLDAP E  CVPCGH+AGCMSCL E+K+K WG
Sbjct: 388 L--PSAASLPASTEGERKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWG 445

Query: 471 CPVCRANISQVIRLYAV 487
           CPVCRA I QVI+LY V
Sbjct: 446 CPVCRAKIDQVIKLYRV 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101655|ref|XP_002334259.1| predicted protein [Populus trichocarpa] gi|222870334|gb|EEF07465.1| predicted protein [Populus trichocarpa]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 291/498 (58%), Positives = 347/498 (69%), Gaps = 54/498 (10%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK ELLYQQV  GN+EGIK LCR+GA LEWIDKEGKTPLI AC++P L++VAKTL
Sbjct: 1   MGQQQSKHELLYQQVKNGNIEGIKKLCREGARLEWIDKEGKTPLILACLDPQLFNVAKTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELGA V+AYRPGR GG PLHHAAK+GLE TVKLLLS+GANAL+ NDDCQTPLEVARAKG
Sbjct: 61  IELGADVNAYRPGRKGGNPLHHAAKKGLENTVKLLLSHGANALMTNDDCQTPLEVARAKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
           + NVVRAIE+HIC+FSGWLRE YGPGFLE+LAP+L+SR +W  VLPTGSRNP  P K EL
Sbjct: 121 YGNVVRAIESHICLFSGWLREFYGPGFLEVLAPRLVSRNIWAVVLPTGSRNPGMPCKFEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQT 240
           AIY SL DA+PR +IALWKANLEEPKF  SD +V I DNST                  +
Sbjct: 181 AIYSSLKDAKPRTIIALWKANLEEPKFHRSDHTVMIADNST------------------S 222

Query: 241 RIKLAAANESDKQQLQAFCNACKGIP----QVNP-AFLHNPQSHAVQATAPTPAEDLELA 295
            +   A  + +   +  +      +P     ++P  FL   Q+ AVQATAP   ED E+A
Sbjct: 223 FLLKYAEKDPNVTSVSVWLGLVIRMPIMLQVMHPLEFLSRSQNLAVQATAPPSDEDPEIA 282

Query: 296 MAINASIQTAIAETPICDPQPSSGATAASTSW----NNSGQGASAAPS--PSKASSSQWV 349
           MA+NASIQ+A+AE PI D   SS   ++S+SW    N  GQGA   P+  P K +SS W 
Sbjct: 283 MAVNASIQSAMAEQPIFDTH-SSTGASSSSSWNCPVNAGGQGAMDVPAAPPPKTTSSGWA 341

Query: 350 MHEARLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPV 409
            +E          T  Q              D++PSAPP+ DE+ +D P+ YPSID  P+
Sbjct: 342 PYET---------TDAQ--------------DSVPSAPPIVDELIDDCPIHYPSIDSSPL 378

Query: 410 DVSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW 469
           D SS  +E LP +  + K D D +SSCVICLDAPVEGAC+PCGHM GCMSCL E+KAK+W
Sbjct: 379 DFSSLPLENLPENTGEKKEDGD-SSSCVICLDAPVEGACIPCGHMVGCMSCLKEIKAKEW 437

Query: 470 GCPVCRANISQVIRLYAV 487
           GCPVCRA I+QV+RLYAV
Sbjct: 438 GCPVCRATINQVVRLYAV 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593715|gb|AAM65682.1| unknown [Arabidopsis thaliana]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 288/497 (57%), Positives = 348/497 (70%), Gaps = 45/497 (9%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK ELLYQQV+YGN  GI+AL RDG  LEW+D+EGKTPLI ACMN  L+DVAKTL
Sbjct: 1   MGQQQSKGELLYQQVSYGNSGGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELG+ V+AYRPGRH GTPLHHAAKRGLE TVKLLLS+GAN LVLNDDCQTPLEVAR KG
Sbjct: 61  IELGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
           F+NVVRAIE HIC+FSGW+RE YGP FL+L APQLLSR+VWV ++PTGSRNPTKPFKLEL
Sbjct: 121 FSNVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRC-------R 233
            +Y SL DA+PR V+ LWKANLEEPK + SD SV IVDNSTIP  R ++RR        R
Sbjct: 181 VVYASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNSTIPSRRMKKRRVCASHGRRR 240

Query: 234 TQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLE 293
            Q++RQTR+KLA + E D QQL+ FC+ACKGIPQ     +H P       +AP P  +  
Sbjct: 241 PQVVRQTRLKLAPSTEGDSQQLKWFCDACKGIPQP----MHPPVFLQAPPSAPPPPSEDG 296

Query: 294 LAMAINASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEA 353
           LAM +NAS+ T ++     DP        ++ + ++ GQ +S++     +SS+     +A
Sbjct: 297 LAMGMNASLHTTMS-----DP--------SNLNHHSIGQASSSS---GPSSSTAPPSGKA 340

Query: 354 RLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDE---ITEDGPVQYPSIDVGPVD 410
              G +S    I              L++ PSAPP+TD+     +DGP+ YPSID  PVD
Sbjct: 341 SAFGFNSHGIGI-------------VLESSPSAPPLTDDDIATVDDGPIHYPSIDSTPVD 387

Query: 411 VSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWG 470
           +  PS   LP S    + +   T +C ICLDAP E  CVPCGH+AGCMSCL E+K+K WG
Sbjct: 388 L--PSAASLPASTEGERKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWG 445

Query: 471 CPVCRANISQVIRLYAV 487
           CPVCRA I QVI+LY V
Sbjct: 446 CPVCRAKIDQVIKLYRV 462

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831072|ref|XP_002883418.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297329258|gb|EFH59677.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  540 bits (1390), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/499 (57%), Positives = 343/499 (68%), Gaps = 49/499 (9%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK ELLYQQV+YGN EGI+ L RDGA LEW+D+EGKT LI ACMN  LYDVAKTL
Sbjct: 1   MGQQQSKGELLYQQVSYGNSEGIRTLHRDGADLEWMDREGKTALILACMNSELYDVAKTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELG+ V+AYRPGR+ GTPLHHAAKRGLE TVKLLLS+GAN LVLNDDCQTPLEVAR KG
Sbjct: 61  IELGSNVNAYRPGRNAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
           F+NVVRAIE HIC+FSGW+RE YGP FL+L APQLLSR+VWV ++PTGSRNPTKPFKLEL
Sbjct: 121 FSNVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRC-------R 233
            +Y SL DA+PR ++ LWKANLEEPK + SD SV IVDNSTIP  R ++RR        R
Sbjct: 181 VVYASLQDAQPRTMMPLWKANLEEPKAKQSDTSVMIVDNSTIPSRRMKKRRVYASHGRRR 240

Query: 234 TQIIRQTRIKLAAANESDKQQLQAFCNACKGIPQVN--PAFLHNPQSHAVQATAPTPAED 291
            Q++RQTR+KLA A E D QQL+ FC+ACKGIPQ    P FL    S          +ED
Sbjct: 241 PQVVRQTRLKLAPATEGDSQQLKWFCDACKGIPQPMRPPVFLQTAPSAPPPP-----SED 295

Query: 292 LELAMAINASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMH 351
            ELAMA+NAS+ T ++     DP        ++ + ++ GQ +S++   S  +       
Sbjct: 296 -ELAMAMNASLHTTMS-----DP--------SNLNHHSIGQASSSSVPSSSTAPPSGKAS 341

Query: 352 EARLSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDE---ITEDGPVQYPSIDVGP 408
               + H                     L++ PSAPP+TD+     ++GP+ YPSID  P
Sbjct: 342 AFVFNSHGIGIV----------------LESSPSAPPLTDDNISTVDEGPIHYPSIDSTP 385

Query: 409 VDVSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK 468
           VD+  PS   LP      + +  +T +C ICLDAP E  CVPCGH+AGCMSCL E+K+K 
Sbjct: 386 VDL--PSASSLPAPTEGERKEDGSTGTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKN 443

Query: 469 WGCPVCRANISQVIRLYAV 487
           WGCPVCRA I QVI+LY V
Sbjct: 444 WGCPVCRAKIDQVIKLYRV 462

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686999|ref|NP_850628.1| putative E3 ubiquitin-protein ligase XBAT35 [Arabidopsis thaliana] gi|15010672|gb|AAK73995.1| AT3g23280/K14B15_17 [Arabidopsis thaliana] gi|16974317|gb|AAL31143.1| AT3g23280/K14B15_17 [Arabidopsis thaliana] gi|332643226|gb|AEE76747.1| putative E3 ubiquitin-protein ligase XBAT35 [Arabidopsis thaliana]

 Score =  518 bits (1335), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/490 (56%), Positives = 334/490 (68%), Gaps = 55/490 (11%)

Query: 1   MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           MG QQSK ELLYQQV+YGN EGI+AL RDG  LEW+D+EGKTPLI ACMN  L+DVAKTL
Sbjct: 1   MGQQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTL 60

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           IELG+ V+AYRPGRH GTPLHHAAKRGLE TVKLLLS+GAN LVLNDDCQTPLEVAR KG
Sbjct: 61  IELGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKG 120

Query: 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
           F+NVVRAIE HIC+FSGW+RE YGP FL+L APQLLSR+VWV ++PTGSRNPTKPFKLEL
Sbjct: 121 FSNVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLEL 180

Query: 181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRRRRRCRTQIIRQT 240
            +Y SL DA+PR V+ LWKANLEEPK + SD SV IVDNST                 +T
Sbjct: 181 VVYASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNST-----------------KT 223

Query: 241 RIKLAAANESDKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLELAMAINA 300
           R+K A + E D QQL+ FC+ACKGIPQ     +H P       +AP P  +  LAM +NA
Sbjct: 224 RLKFAPSTEGDSQQLKWFCDACKGIPQP----MHPPVFLQAPPSAPPPPSEDGLAMGMNA 279

Query: 301 SIQTAIAETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEARLSGHSS 360
           S+ T ++     DP        ++ + ++ GQ +S++   S  +       +A   G +S
Sbjct: 280 SLHTTMS-----DP--------SNLNHHSIGQASSSSGPSSSTAPPS---GKASAFGFNS 323

Query: 361 QQTQIQNNNMPATKTMIHSLDTIPSAPPVTDE---ITEDGPVQYPSIDVGPVDVSSPSIE 417
               I              L++ PSAPP+TD+     +DGP+ YPSID  PVD+  PS  
Sbjct: 324 HGIGI-------------VLESSPSAPPLTDDDIATVDDGPIHYPSIDSTPVDL--PSAA 368

Query: 418 QLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRAN 477
            LP S    + +   T +C ICLDAP E  CVPCGH+AGCMSCL E+K+K WGCPVCRA 
Sbjct: 369 SLPASTEGERKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAK 428

Query: 478 ISQVIRLYAV 487
           I QVI+LY V
Sbjct: 429 IDQVIKLYRV 438

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	487
TAIR|locus:2086263	462	XBAT35 "XB3 ortholog 5 in Arab	0.620	0.653	0.646	4.5e-137
TAIR|locus:505006458	376	XBAT34 "XB3 ortholog 4 in Arab	0.640	0.829	0.544	3.2e-104
TAIR|locus:2827572	344	AKR2B "ankyrin repeat-containi	0.250	0.354	0.352	6.4e-11
UNIPROTKB|I3LPC2	444	ANKRD11 "Uncharacterized prote	0.236	0.259	0.406	1.3e-10
DICTYBASE|DDB_G0276013	748	DDB_G0276013 "cyclin-like F-bo	0.260	0.169	0.358	1.9e-10
ZFIN|ZDB-GENE-050628-1	999	mib2 "mind bomb 2" [Danio reri	0.279	0.136	0.290	6.4e-10
UNIPROTKB|Q53RE8	183	ANKRD39 "Ankyrin repeat domain	0.262	0.699	0.330	8.8e-10
RGD|1306679	2630	Ankrd11 "ankyrin repeat domain	0.236	0.043	0.398	2.6e-09
RGD|1310118	345	Ankrd12 "ankyrin repeat domain	0.223	0.315	0.401	4.3e-09
UNIPROTKB|E1BAT5	2599	ANKRD11 "Uncharacterized prote	0.236	0.044	0.406	5.1e-09

TAIR|locus:2086263 XBAT35 "XB3 ortholog 5 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 1013 (361.7 bits), Expect = 4.5e-137, Sum P(2) = 4.5e-137
 Identities = 205/317 (64%), Positives = 233/317 (73%)

Query:     1 MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
             MG QQSK ELLYQQV+YGN EGI+AL RDG  LEW+D+EGKTPLI ACMN  L+DVAKTL
Sbjct:     1 MGQQQSKGELLYQQVSYGNSEGIRALHRDGGDLEWMDREGKTPLILACMNSELFDVAKTL 60

Query:    61 IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
             IELG+ V+AYRPGRH GTPLHHAAKRGLE TVKLLLS+GAN LVLNDDCQTPLEVAR KG
Sbjct:    61 IELGSNVNAYRPGRHAGTPLHHAAKRGLENTVKLLLSHGANPLVLNDDCQTPLEVARVKG 120

Query:   121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLEL 180
             F+NVVRAIE HIC+FSGW+RE YGP FL+L APQLLSR+VWV ++PTGSRNPTKPFKLEL
Sbjct:   121 FSNVVRAIEKHICLFSGWMREFYGPTFLDLFAPQLLSRRVWVVIVPTGSRNPTKPFKLEL 180

Query:   181 AIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSXXXXXXXXXXXXXXXXXXX- 239
              +Y SL DA+PR V+ LWKANLEEPK + SD SV IVDNS                    
Sbjct:   181 VVYASLQDAQPRTVMPLWKANLEEPKAKQSDTSVMIVDNSTIPSRRMKKRRVCASHGRRR 240

Query:   240 ------XXXKLAAANESDKQQLQAFCNACKGIPQVN--PAFLHNPQSHAVQATAPTPAED 291
                      K A + E D QQL+ FC+ACKGIPQ    P FL  P S       P P+ED
Sbjct:   241 PQVVRQTRLKFAPSTEGDSQQLKWFCDACKGIPQPMHPPVFLQAPPS-----APPPPSED 295

Query:   292 LELAMAINASIQTAIAE 308
               LAM +NAS+ T +++
Sbjct:   296 -GLAMGMNASLHTTMSD 311

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:505006458 XBAT34 "XB3 ortholog 4 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 823 (294.8 bits), Expect = 3.2e-104, Sum P(2) = 3.2e-104
 Identities = 177/325 (54%), Positives = 219/325 (67%)

Query:     1 MGLQQS--KEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAK 58
             MG QQS  K+E+L+Q+V+  NVEGIK+L  +GAGLE +DK G+TPLI AC N  LYDVAK
Sbjct:     1 MGQQQSQSKDEMLFQEVSNNNVEGIKSLHHEGAGLEGVDKLGRTPLILACTNDDLYDVAK 60

Query:    59 TLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA 118
             TL+ELG+ V+AYR G +GGTPLHHAAKRGL  TVKLLLS+GAN LVL+DD +T LEVAR 
Sbjct:    61 TLLELGSNVNAYRSGCNGGTPLHHAAKRGLVHTVKLLLSHGANPLVLDDDVKTALEVARD 120

Query:   119 KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKL 178
             +G++NVVRAIE+HIC+FSG +RE  G   L L APQLLSRKVWV V+PTGSRNPTKP KL
Sbjct:   121 EGYSNVVRAIESHICLFSGCMREYSGSSLLNLFAPQLLSRKVWVVVVPTGSRNPTKPLKL 180

Query:   179 ELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSXXXXXXXXXXXXXXXXXX 238
             EL +Y S+ DA+PRMVI LWKANLEEPK    D SV I+D+S                  
Sbjct:   181 ELVLYDSIQDAQPRMVIPLWKANLEEPKSFRCDDSVMIIDDSRSPKSMRQRRESGFISQA 240

Query:   239 XXXX--------KLAAANESDKQQLQAFCNACKGIPQ-VNPA-FLHNPQSHAVQATAPTP 288
                         KLAA  + D +Q+  F  ACKG+PQ +NP  F+   Q+       P  
Sbjct:   241 RRWAQVDRQIRLKLAAEIKGDMKQMNWFSEACKGVPQPMNPPRFMKTSQATTTTTNVPAL 300

Query:   289 AEDLELAMAINA-SIQTAIAETPIC 312
             ++D    +A++  S +TA  E  +C
Sbjct:   301 SDDALTRVAMSLPSPKTANKEDGLC 325

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2827572 AKR2B "ankyrin repeat-containing 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 6.4e-11, P = 6.4e-11
 Identities = 44/125 (35%), Positives = 68/125 (54%)

Query:     5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG 64
             + +E +++Q  + G+VEG+KA    G   +  D EG+T L  AC   G    A+ L++ G
Sbjct:   218 EEEESIVHQTASLGDVEGLKAALASGGNKDEEDSEGRTALHFAC-GYGEVRCAQVLLDAG 276

Query:    65 AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNV 124
             A  +A    ++  TPLH+AA  G +  V LLL  GA     N D + P++VAR     +V
Sbjct:   277 ANANAIDKNKN--TPLHYAAGYGRKECVSLLLENGAAVTQQNMDNKNPIDVARLNNQLDV 334

Query:   125 VRAIE 129
             V+ +E
Sbjct:   335 VKLLE 339

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|I3LPC2 ANKRD11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 48/118 (40%), Positives = 62/118 (52%)

Query:     8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
             E  L++    G+   IK L  +GA +   D  G T L  AC N G YDVAK L+  GA+V
Sbjct:   138 ETRLHRAAIRGDARRIKELISEGADVNVKDFAGWTALHEAC-NRGYYDVAKQLLAAGAEV 196

Query:    68 DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
             +    G    TPLH AA  G  + VKLLL YG N    N   +TPL+VA +    N++
Sbjct:   197 NT--KGLDDDTPLHDAANNGHYKVVKLLLRYGGNPQQSNRKGETPLKVASSPTMVNLL 252

GO:0060348 "bone development" evidence=IEA

GO:0060323 "head morphogenesis" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0001894 "tissue homeostasis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

DICTYBASE|DDB_G0276013 DDB_G0276013 "cyclin-like F-box containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 180 (68.4 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 47/131 (35%), Positives = 70/131 (53%)

Query:     2 GLQQSKEELLYQQVNY-GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
             G+   K      + +Y G+   I+ L R+GA +E   + G T L  AC   G  + A++L
Sbjct:   439 GISLKKRNKFLLKASYKGHRSVIECLLRNGADIETNTRSGFTALHMAC-GKGHVEAAESL 497

Query:    61 IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
             I   AK++     ++G TPLH AA++G  R V+LL+++GAN    N +  TPL  A   G
Sbjct:   498 ILANAKIEC--KNKNGSTPLHTAAQKGHVRVVELLITHGANIEATNINGVTPLNSAAHNG 555

Query:   121 FTNVVRAIENH 131
              T VVR +  H
Sbjct:   556 HTEVVRCLLEH 566

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050628-1 mib2 "mind bomb 2" [Danio rerio (taxid:7955)]

 Score = 137 (53.3 bits), Expect = 6.4e-10, Sum P(2) = 6.4e-10
 Identities = 41/141 (29%), Positives = 67/141 (47%)

Query:     4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL 63
             +Q     L  +  +G+   ++ L +       I  +GKT L  A  + G  +V K L++ 
Sbjct:   474 EQDNPGRLVIEAAHGSAAKVRELLQKHPDKVDIKNQGKTALQVAA-HQGHVEVVKVLLQA 532

Query:    64 GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN 123
              + ++A      G   LH+ A        +LLLS GA+  +LN+   T L +A  KGFT+
Sbjct:   533 NSSIEA--KDEDGDAALHYTAFGNQAEIARLLLSKGASVNLLNNSMCTALHIAVNKGFTD 590

Query:   124 VVRAIENHICIFSGWLRELYG 144
             VVR +  H    +  L++ YG
Sbjct:   591 VVRVLTEHSADVN--LQDSYG 609

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IC

GO:0048471 "perinuclear region of cytoplasm" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0002090 "regulation of receptor internalization" evidence=IDA

GO:0030318 "melanocyte differentiation" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=IDA

UNIPROTKB|Q53RE8 ANKRD39 "Ankyrin repeat domain-containing protein 39" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 8.8e-10, P = 8.8e-10
 Identities = 45/136 (33%), Positives = 69/136 (50%)

Query:     1 MGLQQSKEELLYQQVNY-----GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYD 55
             +G+QQ+ EE+ +++  +     G++  +K L +        D  G T L  A  N G Y 
Sbjct:    20 LGVQQTLEEMDFERGIWSAALNGDLGRVKHLIQKAEDPSQPDSAGYTALHYASRN-GHYA 78

Query:    56 VAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115
             V + L+E GAK DA   G  G T LH A+  G     +LLLS+G+N  V++DD  T L  
Sbjct:    79 VCQFLLESGAKCDAQTHG--GATALHRASYCGHTEIARLLLSHGSNPRVVDDDGMTSLHK 136

Query:   116 ARAKGFTNVVRAIENH 131
             A  +G  ++   +  H
Sbjct:   137 AAERGHGDICSLLLQH 152

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

RGD|1306679 Ankrd11 "ankyrin repeat domain 11" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
 Identities = 47/118 (39%), Positives = 62/118 (52%)

Query:     8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
             E  L++    G+   IK L  +GA +   D  G T L  AC N G YD+AK L+  GA+V
Sbjct:   169 ETRLHRAAIRGDARRIKELISEGADVNVKDFAGWTALHEAC-NRGYYDIAKQLLAAGAEV 227

Query:    68 DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
             +    G    TPLH AA  G  + VKLLL YG N    N   +TPL+VA +    N++
Sbjct:   228 NT--KGLDDDTPLHDAANNGHYKVVKLLLRYGGNPQQSNRKGETPLKVANSPTMVNLL 283

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001894 "tissue homeostasis" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=ISO

GO:0048705 "skeletal system morphogenesis" evidence=ISO

GO:0060323 "head morphogenesis" evidence=ISO

GO:0060325 "face morphogenesis" evidence=ISO

GO:0060348 "bone development" evidence=ISO

RGD|1310118 Ankrd12 "ankyrin repeat domain 12" [Rattus norvegicus (taxid:10116)]

 Score = 162 (62.1 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 45/112 (40%), Positives = 57/112 (50%)

Query:     8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
             E  L+     G+V+ +K L   GA +   D  G TPL  AC N G YDVAK LI  GA V
Sbjct:   186 ETPLHMAAIRGDVKQVKELISLGADVNVKDFAGWTPLHEAC-NVGYYDVAKILIAAGADV 244

Query:    68 DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAK 119
             +    G    TPLH +A  G    VKLLL +G N    N   + P++VA  +
Sbjct:   245 NTQ--GLDDDTPLHDSASSGHRDIVKLLLRHGGNPFQANKHGERPVDVAETE 294

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E1BAT5 ANKRD11 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
 Identities = 48/118 (40%), Positives = 62/118 (52%)

Query:     8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
             E  L++    G+   IK L  +GA +   D  G T L  AC N G YDVAK L+  GA+V
Sbjct:   169 ETRLHRAAIRGDARRIKELISEGADVNVKDFAGWTALHEAC-NRGYYDVAKQLLAAGAEV 227

Query:    68 DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
             +    G    TPLH AA  G  + VKLLL YG N    N   +TPL+VA +    N++
Sbjct:   228 NT--KGLDDDTPLHDAANNGHYKVVKLLLRYGGNPQQSNRKGETPLKVASSPTMVNLL 283

GO:0060348 "bone development" evidence=IEA

GO:0060323 "head morphogenesis" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0001894 "tissue homeostasis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q4FE47	XB35_ARATH	6, ., 3, ., 2, ., -	0.5794	0.9281	0.9783	yes	no
Q7XI08	XB34_ORYSJ	6, ., 3, ., 2, ., -	0.5084	0.9589	0.9103	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	487
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-23
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-14
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	4e-13
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	2e-12
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	6e-08
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-07
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	1e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	5e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	5e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-06
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-06
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	5e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	8e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-05
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	8e-05
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-04
PHA02884	300	PHA02884, PHA02884, ankyrin repeat protein; Provis	5e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.003
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.004
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 94.0 bits (234), Expect = 5e-23
 Identities = 44/114 (38%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
            + G++E +K L  +GA +   D +G+TPL  A  N G  ++ K L+E GA V+A    +
Sbjct: 15  ASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEKGADVNA--RDK 71

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
            G TPLH AA+ G    VKLLL +GA+    + D +TPL +A   G   VV+ +
Sbjct: 72  DGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 84.7 bits (210), Expect = 9e-20
 Identities = 41/96 (42%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 36  IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
            D++G+TPL  A  N G  +V K L+E GA V+A      G TPLH AAK G    VKLL
Sbjct: 3   RDEDGRTPLHLAASN-GHLEVVKLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 96  LSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           L  GA+    + D  TPL +A   G  +VV+ +  H
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 74.2 bits (183), Expect = 2e-16
 Identities = 34/92 (36%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
              GN+E +K L   GA +   D +  T L  A  N G  ++ K L+E GA V+A    +
Sbjct: 5   AKNGNLELVKLLLEKGADVNLGDTD--TALHLAARN-GNLEIVKLLLEHGADVNA--KDK 59

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLN 106
            G T LH AA+ G    VKLLL +GA+  + +
Sbjct: 60  DGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 37/82 (45%), Positives = 46/82 (56%), Gaps = 3/82 (3%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
              G++E +K L   GA +   DK+G TPL  A  N G  DV K L++ GA V+A    +
Sbjct: 48  AKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN-GNLDVVKLLLKHGADVNA--RDK 104

Query: 75  HGGTPLHHAAKRGLERTVKLLL 96
            G TPLH AAK G    VKLLL
Sbjct: 105 DGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 71.1 bits (174), Expect = 4e-13
 Identities = 45/128 (35%), Positives = 64/128 (50%), Gaps = 10/128 (7%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL---IAACMNPGLYDVAKTLIELGAKV 67
           L+  V + N   +  L  +GA  +  DK G TPL   +  C +   YD+ K L+E G  V
Sbjct: 205 LHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD---YDILKLLLEHGVDV 261

Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF-TNVVR 126
           +A      G T LH + K   ER +KLLL YGA+   LN    TPL  A  +    N+ R
Sbjct: 262 NAKSYIL-GLTALHSSIKS--ERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGR 318

Query: 127 AIENHICI 134
            + ++IC+
Sbjct: 319 ILISNICL 326

Length = 477

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 68.3 bits (166), Expect = 5e-13
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN----PGLYDVAKTLIELGA 65
            L+   + G+ + +K L   GA +   D +G TPL  A +N     G  +VAK L+E GA
Sbjct: 76  PLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA 135

Query: 66  KVD-AYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNV 124
            +D        G TPLH AA  G    V+LLL  GA+    N    T L+ A   G   +
Sbjct: 136 DLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIEL 195

Query: 125 VRAIENHI 132
           V+ + +  
Sbjct: 196 VKLLLDKG 203

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 5/88 (5%)

Query: 44  LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANAL 103
           L  A  N G  ++ K L+E GA V+         T LH AA+ G    VKLLL +GA+  
Sbjct: 1   LHLAAKN-GNLELVKLLLEKGADVNLGD----TDTALHLAARNGNLEIVKLLLEHGADVN 55

Query: 104 VLNDDCQTPLEVARAKGFTNVVRAIENH 131
             + D  T L +A   G   +V+ +  H
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 61.6 bits (150), Expect = 2e-12
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481
           CVICL+ P     +PCGH+  C  C   +++KK  CP+CR  I  V
Sbjct: 5   CVICLERPRNVVFLPCGHLCLCEECAKRLRSKK-KCPICRQPIESV 49

Length = 49

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 60  LIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           L+E G  +D      +G TPLH AAK G    V+ LL  G +  + + D  T L++A
Sbjct: 1   LLEHGP-IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 54.6 bits (131), Expect = 6e-08
 Identities = 35/108 (32%), Positives = 55/108 (50%), Gaps = 5/108 (4%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVD 68
            L+  +  G++E IK L   GA +   D  G  P+ IA   N   +D+ K L+E GA  +
Sbjct: 127 FLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHN--FFDIIKLLLEKGAYAN 184

Query: 69  AYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
                 +G +PLH+AA+ G    +KLL+ +G + +    +  TPL  A
Sbjct: 185 V--KDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 23  IKALCRDGAGLEWIDKE-GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81
            K L   GA +   D+  G T L  A  N     + + L+  GA V+   P +   +PLH
Sbjct: 150 TKLLLSYGADINMKDRHKGNTALHYATENKD-QRLTELLLSYGANVNI--PDKTNNSPLH 206

Query: 82  HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           HA K   +  V +LL  GA+    +    TPL ++
Sbjct: 207 HAVKHYNKPIVHILLENGASTDARDKCGNTPLHIS 241

Length = 477

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 435 SCVICLDAPVE-GACVPCGHMAGCMSCLNEVKAKKWGCPVCRA 476
            C ICLD   +     PCGH+  C  C+     KK  CP+CR 
Sbjct: 4   ECPICLDLLRDPVVLTPCGHVF-CRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.6 bits (124), Expect = 5e-07
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 55  DVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLE 114
           +    L+  G  ++      +G TPLH+A        VK LL  GAN  ++N    TPL 
Sbjct: 173 NRVNYLLSYGVPINI--KDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLH 230

Query: 115 VARAKGFTNVVRAIENH 131
           +A       + + + N+
Sbjct: 231 IAILNNNKEIFKLLLNN 247

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 57  AKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           A+ L+  GA  +       G TPLH A   G  + V++LL +GA+  +L+ D +TPLE+A
Sbjct: 98  ARILLTGGADPNCR--DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELA 155

Query: 117 RAKGFTNVVRAIENH-ICIFSG 137
              GF  VV+ +  H  C F  
Sbjct: 156 EENGFREVVQLLSRHSQCHFEL 177

Length = 664

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.2 bits (123), Expect = 8e-07
 Identities = 43/136 (31%), Positives = 61/136 (44%), Gaps = 20/136 (14%)

Query: 6   SKEELLYQQV-NYGNV--EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAK---T 59
             E  LY  + N  NV  E ++ L   GA + +  + GKTPL    ++     V      
Sbjct: 10  IMEAALYDYLLNASNVTVEEVRRLLAAGADVNFRGEYGKTPL-HLYLHYSSEKVKDIVRL 68

Query: 60  LIELGAKVDAYRPGRHGGTPLH----HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115
           L+E GA V+A  P R G TPLH    +A        +KLL+  GA+    +   +TPL V
Sbjct: 69  LLEAGADVNA--PERCGFTPLHLYLYNATT---LDVIKLLIKAGADVNAKDKVGRTPLHV 123

Query: 116 ARAKGF---TNVVRAI 128
               GF     V+R +
Sbjct: 124 Y-LSGFNINPKVIRLL 138

Length = 471

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 6/101 (5%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLE---WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
           L      GN+E  K L   GA L+     D++G TPL  A +N G  D+ + L+E GA  
Sbjct: 115 LNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN-GDADIVELLLEAGADP 173

Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDD 108
           ++     +G T L  AAK G    VKLLL  G +  +L  +
Sbjct: 174 NSR--NSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLND 107
            G TPLH AA+ G    VKLLL  GA+    + 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.9 bits (116), Expect = 5e-06
 Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)

Query: 56  VAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115
           +A+ L+E GA V+A     +  TP+H+AA+RG  + V LLLSYGA+  ++  D  + LE 
Sbjct: 160 IAEMLLEGGADVNA--KDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC 217

Query: 116 ARAKGFTNVVRAI 128
           A      + ++AI
Sbjct: 218 AVDSKNIDTIKAI 230

Length = 682

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 435 SCVICLDAPVEGACV---PCGHMAGCMSCLNEVKAKKWGCPVCRA 476
            C ICLD    G  V   PCGH+     CL++       CP+CRA
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVF-HKECLDKWLRSSNTCPLCRA 45

Length = 46

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 43.0 bits (102), Expect = 8e-06
 Identities = 18/51 (35%), Positives = 24/51 (47%)

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           G T LH AA  G    VK LL  G +    ++D  T L +A   G   V++
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 29/81 (35%), Positives = 39/81 (48%), Gaps = 3/81 (3%)

Query: 18  GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
           G+  G + L   GA     D +G+TPL  AC N G   V + L+E GA  D     + G 
Sbjct: 93  GDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGA--DPTLLDKDGK 149

Query: 78  TPLHHAAKRGLERTVKLLLSY 98
           TPL  A + G    V+LL  +
Sbjct: 150 TPLELAEENGFREVVQLLSRH 170

Length = 664

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 3/45 (6%)

Query: 436 CVICLDAPVEGACV-PCGHMAGCMSCLNE-VKAKKWGCPVCRANI 478
           C ICL+   E   + PCGH+  C SC+++ +K+ K  CP+CR  I
Sbjct: 2   CPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 46.6 bits (110), Expect = 3e-05
 Identities = 38/110 (34%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 8   EELLYQQVNYG-NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK 66
           E  LY     G + E I+ L   GA +   D+   TPL  A       D+  TL+ELGA 
Sbjct: 308 ETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN 367

Query: 67  VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           V+A        TP+H+AA R     +  LL YGA+   L+    T L  A
Sbjct: 368 VNAR--DYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415

Length = 682

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 42 TPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
          T L  A ++ G  ++ K L+E G  ++  R    G T LH AA+ G    +KLLL
Sbjct: 3  TALHKAAIS-GRLELVKYLLEKGVDIN--RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 4/98 (4%)

Query: 20  VEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTP 79
            + ++ L   GA +   ++ G TPL     N    DV K LI+ GA V+A    + G TP
Sbjct: 63  KDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA--KDKVGRTP 120

Query: 80  LH-HAA-KRGLERTVKLLLSYGANALVLNDDCQTPLEV 115
           LH + +      + ++LLL  GA+   L+    TPL V
Sbjct: 121 LHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAV 158

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.7 bits (106), Expect = 8e-05
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
           D  G TPL  A  N    +  K L++LGA  +     ++G TPLH A     +   KLLL
Sbjct: 189 DVYGFTPLHYAVYNNNP-EFVKYLLDLGANPNLV--NKYGDTPLHIAILNNNKEIFKLLL 245

Query: 97  SYGANA------LVLNDD 108
           + G +       L+   D
Sbjct: 246 NNGPSIKTIIETLLYFKD 263

Length = 422

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 19  NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT 78
           NV  I  L   GA +E + ++  T L  A      Y   KTLI+ GA V++    +   T
Sbjct: 387 NVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS--KNKDLST 444

Query: 79  PLHHAAKRGLE-RTVKLLLSYGANALVLNDDCQTPLEVA 116
           PLH+A K+  +   +++LL  GA+   +N   Q PL +A
Sbjct: 445 PLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 420 PCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEV--KAKKWGCPVCRA 476
              K+ +     A   C +CL+ P   +C PCGH+  C+SCL     K K   CP+CRA
Sbjct: 202 LSKKNGLPFIPLADYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRA 259

Length = 271

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 14/24 (58%), Positives = 16/24 (66%)

Query: 78  TPLHHAAKRGLERTVKLLLSYGAN 101
           TPLH AA+ G    VKLLL  GA+
Sbjct: 4   TPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN----PGLYDVAKTLIELGAK 66
           LY      N++ +K L  +GA +    K   TPL            + ++ K L+E GA 
Sbjct: 39  LYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGAN 98

Query: 67  VDAYRPGRHGGTPLHHAA--KRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           V+A     +G TPL +A   K      V+ LL  GAN  + N D +  L + 
Sbjct: 99  VNAP--DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLY 148

Length = 422

>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 6/77 (7%)

Query: 42  TPLIAA--CMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
            PLI A  C N    D AK LI  GA V+ Y       TPL+ +   G  + +++LLSYG
Sbjct: 72  NPLIYAIDCDN---DDAAKLLIRYGADVNRY-AEEAKITPLYISVLHGCLKCLEILLSYG 127

Query: 100 ANALVLNDDCQTPLEVA 116
           A+  +  +D  TP+E+A
Sbjct: 128 ADINIQTNDMVTPIELA 144

Length = 300

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 8/104 (7%)

Query: 17  YGNVEG-IKALCRDGAGLEWIDKEGKTPLIAACMNPGL-YDVAKTLIELGAKVDAYRPGR 74
                  IK L + GA +   DK G+TPL        +   V + L+  GA V+A     
Sbjct: 93  NATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD--L 150

Query: 75  HGGTPLHHAAKRG---LERTVKLLLSYGANALVLNDDCQTPLEV 115
           +G TPL    K     +E  ++LL+  GA+   ++D  ++ L  
Sbjct: 151 YGMTPLAVLLKSRNANVE-LLRLLIDAGADVYAVDDRFRSLLHH 193

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 3/113 (2%)

Query: 19  NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT 78
             + IK +   G  +   D E KT L  A     L +  K L E GA V+      +G  
Sbjct: 103 EKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDL-ESIKMLFEYGADVNI--EDDNGCY 159

Query: 79  PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           P+H A K      +KLLL  GA A V +++ ++PL  A   G    ++ + +H
Sbjct: 160 PIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH 212

Length = 434

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGAN 101
            G TPLH AA+ G    VKLLL +GA+
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGAD 27

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 39 EGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
          +G TPL  A  N G  +V K L+E GA V+A
Sbjct: 1  DGNTPLHLAARN-GHLEVVKLLLEAGADVNA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 17/123 (13%)

Query: 16  NYGNVEGIKALCRDG------AGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           N  NVE  K +  +         L +IDK+ K  +I A       ++ K L+  GA ++ 
Sbjct: 110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEA-------EITKLLLSYGADIN- 161

Query: 70  YRPGRHGG-TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRA- 127
               RH G T LH+A +   +R  +LLLSYGAN  + +    +PL  A       +V   
Sbjct: 162 -MKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHIL 220

Query: 128 IEN 130
           +EN
Sbjct: 221 LEN 223

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 30/143 (20%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAA----------------------- 47
           L   +  G+ + ++   + GA +  I+ +   PL+ A                       
Sbjct: 39  LIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILP 98

Query: 48  --CMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVL 105
             C+     D+ KT+++ G  V+         T LH+A K+G   ++K+L  YGA+  + 
Sbjct: 99  IPCIEK---DMIKTILDCGIDVNI--KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIE 153

Query: 106 NDDCQTPLEVARAKGFTNVVRAI 128
           +D+   P+ +A    F ++++ +
Sbjct: 154 DDNGCYPIHIAIKHNFFDIIKLL 176

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	487
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.94
PHA02874	434	ankyrin repeat protein; Provisional	99.94
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.94
PHA03100	480	ankyrin repeat protein; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0514	452	consensus Ankyrin repeat protein [General function	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
PHA02946	446	ankyin-like protein; Provisional	99.94
PHA02798	489	ankyrin-like protein; Provisional	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.93
KOG0510	929	consensus Ankyrin repeat protein [General function	99.93
PHA03095	471	ankyrin-like protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02798	489	ankyrin-like protein; Provisional	99.92
KOG0510	929	consensus Ankyrin repeat protein [General function	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02989	494	ankyrin repeat protein; Provisional	99.91
PHA02989	494	ankyrin repeat protein; Provisional	99.91
PHA02917	661	ankyrin-like protein; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02741	169	hypothetical protein; Provisional	99.89
PHA02730	672	ankyrin-like protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
PHA02795	437	ankyrin-like protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.88
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.88
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.87
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.87
PHA02741	169	hypothetical protein; Provisional	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.86
PHA02730	672	ankyrin-like protein; Provisional	99.86
KOG0514	452	consensus Ankyrin repeat protein [General function	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.84
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.83
PHA02792	631	ankyrin-like protein; Provisional	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.82
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.81
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.8
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.76
PHA02792	631	ankyrin-like protein; Provisional	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.73
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.72
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.67
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.64
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.64
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.63
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.63
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.54
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	99.52
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.49
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.47
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.43
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.42
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.31
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	99.18
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	99.18
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.1
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.03
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.01
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.95
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.94
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.94
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.92
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.86
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.85
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.83
PHA02929	238	N1R/p28-like protein; Provisional	98.83
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.82
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.82
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.81
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.81
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.79
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.78
PF13606	30	Ank_3: Ankyrin repeat	98.74
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.73
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.69
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.66
PF13606	30	Ank_3: Ankyrin repeat	98.65
KOG0522	560	consensus Ankyrin repeat protein [General function	98.62
PHA02926	242	zinc finger-like protein; Provisional	98.58
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.58
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.56
PF14634	44	zf-RING_5: zinc-RING finger domain	98.55
KOG0522	560	consensus Ankyrin repeat protein [General function	98.55
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.51
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.44
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.43
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.43
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.4
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.33
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.32
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.31
KOG2384	223	consensus Major histocompatibility complex protein	98.29
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.28
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.28
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.27
KOG0511	516	consensus Ankyrin repeat protein [General function	98.22
KOG2384	223	consensus Major histocompatibility complex protein	98.22
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.21
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.19
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.12
KOG0511	516	consensus Ankyrin repeat protein [General function	98.1
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.1
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.08
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.97
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.95
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.92
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	97.92
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.87
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	97.84
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.8
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.77
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.59
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.59
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.41
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.39
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.36
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.33
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.28
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.27
COG5152	259	Uncharacterized conserved protein, contains RING a	97.21
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.01
KOG2505	591	consensus Ankyrin repeat protein [General function	96.94
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.91
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.87
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.8
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	96.62
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.58
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	96.49
KOG2505	591	consensus Ankyrin repeat protein [General function	96.32
KOG3002	299	consensus Zn finger protein [General function pred	96.18
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.05
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.99
KOG0825	1134	consensus PHD Zn-finger protein [General function	95.94
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	95.86
COG5175	480	MOT2 Transcriptional repressor [Transcription]	95.81
PF04641	260	Rtf2: Rtf2 RING-finger	95.73
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.59
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.47
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.46
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.4
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.4
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	95.24
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.16
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.11
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	95.06
KOG2660	331	consensus Locus-specific chromosome binding protei	94.99
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	94.95
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	94.81
KOG1001	674	consensus Helicase-like transcription factor HLTF/	94.78
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.74
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	94.09
COG5219	1525	Uncharacterized conserved protein, contains RING Z	93.8
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.76
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.67
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	93.66
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.63
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	92.7
KOG2113	394	consensus Predicted RNA binding protein, contains	91.87
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	91.81
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	91.69
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.01
PF04710	416	Pellino: Pellino; InterPro: IPR006800 Pellino is i	90.95
COG5222	427	Uncharacterized conserved protein, contains RING Z	90.61
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.23
KOG3842	429	consensus Adaptor protein Pellino [Signal transduc	88.59
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	88.55
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	87.68
PHA02862	156	5L protein; Provisional	86.5
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	86.44
PHA02825	162	LAP/PHD finger-like protein; Provisional	86.3
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	84.72
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	84.0
KOG1941	518	consensus Acetylcholine receptor-associated protei	83.43
PHA03096	284	p28-like protein; Provisional	83.24
KOG2113	394	consensus Predicted RNA binding protein, contains	83.19
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	81.11

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-34  Score=244.52  Aligned_cols=168  Identities=29%  Similarity=0.265  Sum_probs=159.8

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHc-CCCccccCCCCCCCcHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-GAKVDAYRPGRHGGTPL   80 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpL   80 (487)
                      .|++|+|||||||..|+.++|.+|++. +..+|.+|..|+||||+||.. |+.++|+.|+.+ |+++|+.  +..|.|+|
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~-g~~evVk~Ll~r~~advna~--tn~G~T~L  110 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN-GNDEVVKELLNRSGADVNAT--TNGGQTCL  110 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc-CcHHHHHHHhcCCCCCccee--cCCCccee
Confidence            467999999999999999999999954 888999999999999999999 999999999998 9999998  99999999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHH
Q 040660           81 HHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKV  160 (487)
Q Consensus        81 h~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~  160 (487)
                      |||+..|..+++++|++.|+.++++|..|.||||-|+.-|.++++++|+..|+.+|  .+|++|.|||| .|...++.++
T Consensus       111 HyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n--~qDk~G~TpL~-~al~e~~~d~  187 (226)
T KOG4412|consen  111 HYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN--TQDKYGFTPLH-HALAEGHPDV  187 (226)
T ss_pred             hhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC--cccccCccHHH-HHHhccCchH
Confidence            99999999999999999999999999999999999999999999999999999999  99999999999 7777789999


Q ss_pred             HHHhhcCCCCCCCCCC
Q 040660          161 WVAVLPTGSRNPTKPF  176 (487)
Q Consensus       161 ~~~Ll~~g~~~~~~~~  176 (487)
                      ..+|+.+|++....+.
T Consensus       188 a~lLV~~gAd~~~edk  203 (226)
T KOG4412|consen  188 AVLLVRAGADTDREDK  203 (226)
T ss_pred             HHHHHHhccceeeccc
Confidence            9999999999877763

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.8e-30  Score=246.26  Aligned_cols=195  Identities=17%  Similarity=0.119  Sum_probs=163.6

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|.+|+||||+|+..|+.+++++|++.|++++..+  |.||||+|+.. |+.+++++|+..|++++.+  |..|+||||+
T Consensus        26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~-g~~eiV~lLL~~Gadvn~~--d~~G~TpLh~  100 (284)
T PHA02791         26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGMDDSQF--DDKGNTALYY  100 (284)
T ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHH
Confidence            47789999999999999999999999999888764  68999999999 9999999999999999987  8899999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCC-CHHHHHHHcCCHHHHHHHHhCCCcccccccc-cCCCCHHHHHhhhcCCHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQ-TPLEVARAKGFTNVVRAIENHICIFSGWLRE-LYGPGFLELLAPQLLSRKV  160 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~G~t~L~~~a~~~~~~~~  160 (487)
                      |+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.++|++|++++.+.    .| ..|.|||| +|+..++.++
T Consensus       101 Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~----~d~~~g~TpLh-~Aa~~g~~ei  175 (284)
T PHA02791        101 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST----FDLAILLSCIH-ITIKNGHVDM  175 (284)
T ss_pred             HHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc----cccccCccHHH-HHHHcCCHHH
Confidence            9999999999999999999999888885 8999999999999999999987653    23 35889999 8999999999


Q ss_pred             HHHhhcCCCCCCCCCCccchh-ccccccccchHHHHHHH--hcccCCCCC
Q 040660          161 WVAVLPTGSRNPTKPFKLELA-IYPSLLDARPRMVIALW--KANLEEPKF  207 (487)
Q Consensus       161 ~~~Ll~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~--~~~~~~~~~  207 (487)
                      +++|+++|++.+.++..+... ++.+...+...++..|.  ++++..+++
T Consensus       176 v~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        176 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             HHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            999999999988877655544 56666677777776665  344444433

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1e-30  Score=220.64  Aligned_cols=187  Identities=24%  Similarity=0.248  Sum_probs=169.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCC-CCCccCC-CCChHHHHHHhCCCcHHHHHHHH-HcCCCccccCCCCCCCcHHHHH
Q 040660            7 KEELLYQQVNYGNVEGIKALCRDGA-GLEWIDK-EGKTPLIAACMNPGLYDVAKTLI-ELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~-~G~TpL~~A~~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      +.++.+.+++......|+.|++... .++.++. +|+|||||||.. |+.+++.+|+ +.+..+|.+  |..||||||+|
T Consensus         3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~-g~~eiv~fLlsq~nv~~ddk--DdaGWtPlhia   79 (226)
T KOG4412|consen    3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSF-GHVEIVYFLLSQPNVKPDDK--DDAGWTPLHIA   79 (226)
T ss_pred             ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeec-CchhHHHHHHhcCCCCCCCc--cccCCchhhhh
Confidence            4577888888888899999998866 6787776 999999999999 9999999999 556777776  99999999999


Q ss_pred             HHhCCHHHHHHHHHc-CCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           84 AKRGLERTVKLLLSY-GANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      +..|+.++|+.|+.+ |+|+|+.++.|.|+||||+.+|..+|+++|+++|+.++  .+|+.|.|||| -|+..+..++++
T Consensus        80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~--~kD~~~qtplH-RAAavGklkvie  156 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR--IKDKQGQTPLH-RAAAVGKLKVIE  156 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc--ccccccCchhH-HHHhccchhhHH
Confidence            999999999999998 99999999999999999999999999999999999999  99999999999 888999999999


Q ss_pred             HhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660          163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                      +|+..|+..+.++..+...++.++-++.+..-..|.+
T Consensus       157 ~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~  193 (226)
T KOG4412|consen  157 YLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR  193 (226)
T ss_pred             HHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHH
Confidence            9999999999999888888888876666665554443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=3.7e-29  Score=239.47  Aligned_cols=184  Identities=15%  Similarity=0.100  Sum_probs=161.4

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCC-cHHHHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG-TPLHHA   83 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~-TpLh~A   83 (487)
                      .+|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  +..|+ ||||+|
T Consensus        59 ~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~-g~~eivk~Ll~~gadin~~--~~~g~~TpL~~A  135 (284)
T PHA02791         59 LENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHA  135 (284)
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcCcc--CCCCCcHHHHHH
Confidence            3578999999999999999999999999999999999999999999 9999999999999999987  77785 899999


Q ss_pred             HHhCCHHHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCH-HHHHhhhcCCHHHH
Q 040660           84 AKRGLERTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGF-LELLAPQLLSRKVW  161 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~-L~~~a~~~~~~~~~  161 (487)
                      +..|+.++|++|++++.+.  .| ..|.||||+|+..|+.++|++|+++|++++  .+|..|.|| || +|+..++.+++
T Consensus       136 a~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n--~~d~~g~t~~L~-~Aa~~~~~e~v  210 (284)
T PHA02791        136 VMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNKDLEML  210 (284)
T ss_pred             HHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC--cccCCCCChHHH-HHHHcCCHHHH
Confidence            9999999999999987653  23 358999999999999999999999999999  899999987 99 99999999999


Q ss_pred             HHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhcccC
Q 040660          162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLE  203 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  203 (487)
                      ++|+.+|++.+.++...       ..-...+.+..|.....+
T Consensus       211 ~lLl~~Ga~in~~~~~~-------~~l~~~e~~~~ll~~~~~  245 (284)
T PHA02791        211 QALFKYDINIYSVNLEN-------VLLDDAEIAKMIIEKHVE  245 (284)
T ss_pred             HHHHHCCCCCccCcccC-------ccCCCHHHHHHHHHhhhh
Confidence            99999999998888532       222444455555544433

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=1.2e-29  Score=252.84  Aligned_cols=177  Identities=26%  Similarity=0.217  Sum_probs=154.4

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      .|.+|-|+|||||.+++++++++|+++|+++|..+ .-|.||||||+++ |++.+|++|+++|||++++  |.+|.|+||
T Consensus        74 ~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~-G~~~vv~lLlqhGAdpt~~--D~~G~~~lH  150 (600)
T KOG0509|consen   74 PDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN-GHISVVDLLLQHGADPTLK--DKQGLTPLH  150 (600)
T ss_pred             CCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc-CcHHHHHHHHHcCCCCcee--cCCCCcHHH
Confidence            46788899999999999999999999999999888 6788999999999 9999999999999999998  899999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc-cCCCCHHHHHhhhcCCHHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE-LYGPGFLELLAPQLLSRKV  160 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~G~t~L~~~a~~~~~~~~  160 (487)
                      +|++.|+.-+|-+||.+|+|++.+|.+|+||||+|+.+|+...++.|++.|+.+.  ..| ..|.|||| +|...++.++
T Consensus       151 la~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~--~~d~~~g~TpLH-wa~~~gN~~~  227 (600)
T KOG0509|consen  151 LAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL--LTDDNHGNTPLH-WAVVGGNLTA  227 (600)
T ss_pred             HHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc--ccccccCCchHH-HHHhcCCcce
Confidence            9999999999999999999999999999999999999999888899999999888  666 88999999 8888888888


Q ss_pred             HHHhhcCCCCCCCCCCccchhcccc
Q 040660          161 WVAVLPTGSRNPTKPFKLELAIYPS  185 (487)
Q Consensus       161 ~~~Ll~~g~~~~~~~~~~~~~~~~~  185 (487)
                      +.+|++.|++.+..+.+++..+..+
T Consensus       228 v~Ll~~g~~~~d~~~~~g~tp~~LA  252 (600)
T KOG0509|consen  228 VKLLLEGGADLDKTNTNGKTPFDLA  252 (600)
T ss_pred             EehhhhcCCcccccccCCCCHHHHH
Confidence            8877788888877776666555544

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=5.8e-28  Score=248.59  Aligned_cols=205  Identities=19%  Similarity=0.271  Sum_probs=176.2

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCC-----------------
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK-----------------   66 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~-----------------   66 (487)
                      +++|.||||+|++.|+.++|++|++.|++++..+..|.||||+|+.. |+.+++++|+++|++                 
T Consensus        32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l  110 (434)
T PHA02874         32 VDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI-GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI  110 (434)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence            46789999999999999999999999999999999999999999999 999999999987754                 


Q ss_pred             ------ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccc
Q 040660           67 ------VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLR  140 (487)
Q Consensus        67 ------~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~  140 (487)
                            ++.+  |..|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..
T Consensus       111 l~~g~d~n~~--~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n--~~  186 (434)
T PHA02874        111 LDCGIDVNIK--DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN--VK  186 (434)
T ss_pred             HHCcCCCCCC--CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC--CC
Confidence                  4554  8899999999999999999999999999999999999999999999999999999999999998  89


Q ss_pred             ccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhcccCCCCCCCCCCce
Q 040660          141 ELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSV  214 (487)
Q Consensus       141 d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  214 (487)
                      +..|.|||| .|+..++.+++++|++.|++...++..+..+++.+...+.......+.+..++..+..+.+|++
T Consensus       187 ~~~g~tpL~-~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh  259 (434)
T PHA02874        187 DNNGESPLH-NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLH  259 (434)
T ss_pred             CCCCCCHHH-HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            999999999 8999999999999999999988777777777766665444333332333444444444444444

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.2e-28  Score=251.26  Aligned_cols=204  Identities=24%  Similarity=0.267  Sum_probs=173.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcH-------------------------------
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLY-------------------------------   54 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~-------------------------------   54 (487)
                      .+.||||+|++.|+.++|++|+++|+++|.+|..|.||||+||.. |+.                               
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~  114 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKE-PNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV  114 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-ccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence            577999999999999999999999999999999999999999976 432                               


Q ss_pred             ---------------------------------HHHHHHHHcCCCccccCCCCC-CCcHHHHHHHhCCHHHHHHHHHcCC
Q 040660           55 ---------------------------------DVAKTLIELGAKVDAYRPGRH-GGTPLHHAAKRGLERTVKLLLSYGA  100 (487)
Q Consensus        55 ---------------------------------~~v~~Ll~~ga~~~~~~~d~~-g~TpLh~Aa~~g~~~~v~~Ll~~ga  100 (487)
                                                       +++++|+++|++++..  |.. |.||||+|+..|+.+++++|+++|+
T Consensus       115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~--~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga  192 (477)
T PHA02878        115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMK--DRHKGNTALHYATENKDQRLTELLLSYGA  192 (477)
T ss_pred             HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCcc--CCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence                                             3777888889999987  777 9999999999999999999999999


Q ss_pred             CcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhh-hcCCHHHHHHhhcCCCCCCCCCC-cc
Q 040660          101 NALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAP-QLLSRKVWVAVLPTGSRNPTKPF-KL  178 (487)
Q Consensus       101 ~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~-~~~~~~~~~~Ll~~g~~~~~~~~-~~  178 (487)
                      +++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+ ..++.+++++|+++|++.+.++. .+
T Consensus       193 d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in--~~d~~g~TpLh-~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g  269 (477)
T PHA02878        193 NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD--ARDKCGNTPLH-ISVGYCKDYDILKLLLEHGVDVNAKSYILG  269 (477)
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHhcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            999999999999999999999999999999999999  99999999999 555 45789999999999999987764 46


Q ss_pred             chhccccccccchHHHHHHH--hcccCCCCCCCCCCceeee
Q 040660          179 ELAIYPSLLDARPRMVIALW--KANLEEPKFQHSDPSVTIV  217 (487)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~i~  217 (487)
                      ..+++.+.  .....+..|.  ++.++..+..+.+|+....
T Consensus       270 ~TpLh~A~--~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~  308 (477)
T PHA02878        270 LTALHSSI--KSERKLKLLLEYGADINSLNSYKLTPLSSAV  308 (477)
T ss_pred             CCHHHHHc--cCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            66666663  3344444443  4555566666777766544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.6e-27  Score=219.96  Aligned_cols=172  Identities=16%  Similarity=0.109  Sum_probs=152.1

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCC-CcHHHHHHHHHcCCCccccCCC-CCCCcHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNP-GLYDVAKTLIELGAKVDAYRPG-RHGGTPLH   81 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~-g~~~~v~~Ll~~ga~~~~~~~d-~~g~TpLh   81 (487)
                      .+.+.||||+|+..|+.++|+.|++.   ++..|..|.||||+|+... ++.+++++|+++|++++.+  + ..|.||||
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~--~~~~g~TpLh   92 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFK--TRDNNLSALH   92 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCcc--CCCCCCCHHH
Confidence            35678999999999999999999975   5678899999999999861 4899999999999999987  5 58999999


Q ss_pred             HHHHh---CCHHHHHHHHHcCCCcccccCCCCCHHHHHHH--cCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcC
Q 040660           82 HAAKR---GLERTVKLLLSYGANALVLNDDCQTPLEVARA--KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLL  156 (487)
Q Consensus        82 ~Aa~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~--~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~  156 (487)
                      +|+..   ++.+++++|+++|++++.+|..|.||||+|+.  .++.+++++|+++|++++  .+|..|.||||.++...+
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin--~~d~~g~t~Lh~~a~~~~  170 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL--NKDFDNNNILYSYILFHS  170 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccCCCCcHHHHHHHhcC
Confidence            98864   47999999999999999999999999999986  468999999999999999  999999999996567788


Q ss_pred             CHHHHHHhhcCCCCCCCCCCccchhc
Q 040660          157 SRKVWVAVLPTGSRNPTKPFKLELAI  182 (487)
Q Consensus       157 ~~~~~~~Ll~~g~~~~~~~~~~~~~~  182 (487)
                      +.+++++|+++|++.+.++..+..++
T Consensus       171 ~~~iv~~Ll~~Gadi~~~d~~g~tpl  196 (209)
T PHA02859        171 DKKIFDFLTSLGIDINETNKSGYNCY  196 (209)
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            99999999999999887775444333

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=2.6e-27  Score=242.48  Aligned_cols=191  Identities=20%  Similarity=0.168  Sum_probs=158.8

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      +.+|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|++.|++++.. .+..|.||||+|
T Consensus        32 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~-~~~~g~tpL~~A  109 (413)
T PHA02875         32 IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE-GDVKAVEELLDLGKFADDV-FYKDGMTPLHLA  109 (413)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC-CCHHHHHHHHHcCCccccc-ccCCCCCHHHHH
Confidence            34688888888888888888888888888888778888888888888 8888888888888766533 266799999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVA  163 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~  163 (487)
                      +..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++
T Consensus       110 ~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~TpL~-~A~~~g~~eiv~~  186 (413)
T PHA02875        110 TILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLI-IAMAKGDIAICKM  186 (413)
T ss_pred             HHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988  88999999999 8888899999999


Q ss_pred             hhcCCCCCCCCCCccc-hhccccccccchHHHHHHHh
Q 040660          164 VLPTGSRNPTKPFKLE-LAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       164 Ll~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~  199 (487)
                      |++.|++.+..+..+. ..++.+...+....+..|..
T Consensus       187 Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~  223 (413)
T PHA02875        187 LLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK  223 (413)
T ss_pred             HHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence            9999999877765554 33444666666666666654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=6.6e-27  Score=244.23  Aligned_cols=189  Identities=20%  Similarity=0.213  Sum_probs=137.0

Q ss_pred             CCCchHHHHHHH--HcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC--cHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660            4 QQSKEELLYQQV--NYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG--LYDVAKTLIELGAKVDAYRPGRHGGTP   79 (487)
Q Consensus         4 d~~g~t~L~~Aa--~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g--~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   79 (487)
                      |..|.||||+|+  ..|+.++|++|+++|++++..+..|.||||+|+.. |  +.+++++|+++|++++.+  |..|.||
T Consensus       103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~iv~~Ll~~g~din~~--d~~g~tp  179 (480)
T PHA03100        103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES-NKIDLKILKLLIDKGVDINAK--NRYGYTP  179 (480)
T ss_pred             CCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc-CCChHHHHHHHHHCCCCcccc--cCCCCCH
Confidence            456777777777  77777777777777777777777777777777777 6  677777777777777766  6677777


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCcccccCCC------CCHHHHHHHcCC--HHHHHHHHhCCCcccccccccCCCCHHHHH
Q 040660           80 LHHAAKRGLERTVKLLLSYGANALVLNDDC------QTPLEVARAKGF--TNVVRAIENHICIFSGWLRELYGPGFLELL  151 (487)
Q Consensus        80 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g------~TpL~~A~~~g~--~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~  151 (487)
                      ||+|+..|+.+++++|+++|++++..+..|      .||||+|+..|+  .++|++|+++|++++  .+|..|.|||| .
T Consensus       180 L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din--~~d~~g~TpL~-~  256 (480)
T PHA03100        180 LHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN--IKDVYGFTPLH-Y  256 (480)
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC--CCCCCCCCHHH-H
Confidence            777777777777777777777777777766      677777777777  777777777777777  77777777777 6


Q ss_pred             hhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          152 APQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       152 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                      |+..++.+++++|++.|++.+..+..+..++..+........+..|.
T Consensus       257 A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll  303 (480)
T PHA03100        257 AVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLL  303 (480)
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHH
Confidence            77777777777777777777777766666666666655555555544

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=1.5e-27  Score=238.02  Aligned_cols=205  Identities=27%  Similarity=0.279  Sum_probs=178.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660            8 EELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR   86 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~   86 (487)
                      ...++.|++.|+++.|+.|++. |.+++..|.+|.|+||||+.+ ++++++++||++|+++|... ..-+.||||||+++
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN-Nrl~v~r~li~~gadvn~~g-G~l~stPLHWAar~  122 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAIN-NRLDVARYLISHGADVNAIG-GVLGSTPLHWAARN  122 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc-CcHHHHHHHHHcCCCccccC-CCCCCCcchHHHHc
Confidence            4678899999999999999999 999999999999999999999 99999999999999999983 47899999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhc
Q 040660           87 GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLP  166 (487)
Q Consensus        87 g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~  166 (487)
                      |+..+|++|+++|||++++|.+|.|+||+|+..||.-+|-+|+.+|++++  .+|.+|+|||| +|+..+....+..|+.
T Consensus       123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d--~~D~~grTpLm-wAaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID--LRDNNGRTPLM-WAAYKGFALFVRRLLK  199 (600)
T ss_pred             CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC--CcCCCCCCHHH-HHHHhcccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999  99999999999 7888777777999999


Q ss_pred             CCCCCCCCC-CccchhccccccccchHHHHHHH--hcccCCCCCCCCCCceeee
Q 040660          167 TGSRNPTKP-FKLELAIYPSLLDARPRMVIALW--KANLEEPKFQHSDPSVTIV  217 (487)
Q Consensus       167 ~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~i~  217 (487)
                      .|+....++ ..+..++..+...+....+..+.  +...+..+..+++|..+..
T Consensus       200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~  253 (600)
T KOG0509|consen  200 FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQ  253 (600)
T ss_pred             hcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHH
Confidence            999887777 77778887777655555544222  3344455555666666543

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=1.1e-26  Score=237.96  Aligned_cols=181  Identities=17%  Similarity=0.105  Sum_probs=130.5

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC--cHHHHHHHHHcCCCccccCCCCCCCcHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG--LYDVAKTLIELGAKVDAYRPGRHGGTPL   80 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g--~~~~v~~Ll~~ga~~~~~~~d~~g~TpL   80 (487)
                      .|.+|+||||+|++.|+.++|++||++|+++|.+|..|.||||+|+.. +  ..+++++|+++|++++.. .|..|.|||
T Consensus        68 ~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~-~~~~~e~v~lLl~~Gadin~~-~d~~g~tpL  145 (446)
T PHA02946         68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT-DDEVIERINLLVQYGAKINNS-VDEEGCGPL  145 (446)
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc-CCchHHHHHHHHHcCCCcccc-cCCCCCcHH
Confidence            356677888888887888888888877777777777788888877765 3  367777777777777742 167777777


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC--CHHHHHHHHhCCCcccccccccCCCCHHHHHhhhc--C
Q 040660           81 HHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG--FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL--L  156 (487)
Q Consensus        81 h~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~--~  156 (487)
                      | |+..|+.+++++|++.|++++.+|..|+||||+|+..+  +.+++++|+++|++++  .+|..|.|||| +|+..  +
T Consensus       146 ~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin--~~d~~G~TpLH-~Aa~~~~~  221 (446)
T PHA02946        146 L-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS--KPDHDGNTPLH-IVCSKTVK  221 (446)
T ss_pred             H-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCCC
Confidence            6 55567777777777777777777777888887776644  4577778888887777  77777888888 55544  3


Q ss_pred             CHHHHHHhhcCCCCCCCCCCccchhccccccccc
Q 040660          157 SRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDAR  190 (487)
Q Consensus       157 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      +.+++++|+. |++.+.++..+..++..+.....
T Consensus       222 ~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        222 NVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             cHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCC
Confidence            6677777774 67777777667666666555444

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=241.32  Aligned_cols=158  Identities=22%  Similarity=0.221  Sum_probs=145.0

Q ss_pred             HHHHHHHcCCCCCccCCC-CChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q 040660           22 GIKALCRDGAGLEWIDKE-GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGA  100 (487)
Q Consensus        22 ~v~~Ll~~g~~~~~~d~~-G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga  100 (487)
                      ++++|+++|++++.+|.. |.||||+|+.. |+.+++++|+++|++++..  |..|.||||+|+..|+.+++++|++.|+
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~-~~~~iv~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~iv~~Ll~~ga  225 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATEN-KDQRLTELLLSYGANVNIP--DKTNNSPLHHAVKHYNKPIVHILLENGA  225 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhC-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence            667777889999999988 99999999999 9999999999999999998  9999999999999999999999999999


Q ss_pred             CcccccCCCCCHHHHHHHc-CCHHHHHHHHhCCCccccccccc-CCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCcc
Q 040660          101 NALVLNDDCQTPLEVARAK-GFTNVVRAIENHICIFSGWLREL-YGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKL  178 (487)
Q Consensus       101 ~~~~~d~~g~TpL~~A~~~-g~~~~v~~Ll~~ga~~~~~~~d~-~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  178 (487)
                      +++.+|..|+||||+|+.. ++.+++++|+++|++++  .++. .|.|||| .|  .++.+++++|+++|++.+..+..+
T Consensus       226 ~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn--~~~~~~g~TpLh-~A--~~~~~~v~~Ll~~gadin~~d~~g  300 (477)
T PHA02878        226 STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN--AKSYILGLTALH-SS--IKSERKLKLLLEYGADINSLNSYK  300 (477)
T ss_pred             CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC--ccCCCCCCCHHH-HH--ccCHHHHHHHHHCCCCCCCcCCCC
Confidence            9999999999999999976 78999999999999998  7775 8999999 66  567899999999999999988888


Q ss_pred             chhcccccc
Q 040660          179 ELAIYPSLL  187 (487)
Q Consensus       179 ~~~~~~~~~  187 (487)
                      ..++..+..
T Consensus       301 ~TpL~~A~~  309 (477)
T PHA02878        301 LTPLSSAVK  309 (477)
T ss_pred             CCHHHHHHH
Confidence            777776654

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.2e-26  Score=233.55  Aligned_cols=188  Identities=17%  Similarity=0.098  Sum_probs=175.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660            7 KEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR   86 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~   86 (487)
                      .+++||.|++.|+.+++++|+++|++++.++..|.||||+|+.. |+.+++++|+++|++++..  +..+.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~   78 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKF-RDSEAIKLLMKHGAIPDVK--YPDIESELHDAVEE   78 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccc--CCCcccHHHHHHHC
Confidence            57899999999999999999999999999999999999999999 9999999999999999987  78899999999999


Q ss_pred             CCHHHHHHHHHcCCCcc-cccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660           87 GLERTVKLLLSYGANAL-VLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL  165 (487)
Q Consensus        87 g~~~~v~~Ll~~ga~~~-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll  165 (487)
                      |+.+++++|++.|++++ ..+.+|+||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..++.+++++|+
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~~~~g~tpLh-~A~~~~~~~~v~~Ll  155 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD--IPNTDKFSPLH-LAVMMGDIKGIELLI  155 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence            99999999999998764 467789999999999999999999999999999  99999999999 899999999999999


Q ss_pred             cCCCCCCCCCCccchhccccccccchHHHHHHHhc
Q 040660          166 PTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA  200 (487)
Q Consensus       166 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (487)
                      .+|++.+.++..+..+++.+...+....+..|...
T Consensus       156 ~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~  190 (413)
T PHA02875        156 DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS  190 (413)
T ss_pred             hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            99999998888888888888888888877776643

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3e-26  Score=235.92  Aligned_cols=177  Identities=23%  Similarity=0.259  Sum_probs=162.5

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+
T Consensus       120 ~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~-~~~~iv~~Ll~~g~~~n~~--~~~g~tpL~~  196 (434)
T PHA02874        120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH-NFFDIIKLLLEKGAYANVK--DNNGESPLHN  196 (434)
T ss_pred             CCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCC--CCCCCCHHHH
Confidence            367899999999999999999999999999999999999999999999 9999999999999999988  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh-cCCHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ-LLSRKVW  161 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~-~~~~~~~  161 (487)
                      |+..|+.+++++|++.|++++.++..|+||||+|+..++ +++++|+ .|++++  .+|..|.|||| +|+. ....+++
T Consensus       197 A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in--~~d~~G~TpLh-~A~~~~~~~~iv  271 (434)
T PHA02874        197 AAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASIN--DQDIDGSTPLH-HAINPPCDIDII  271 (434)
T ss_pred             HHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCC--CcCCCCCCHHH-HHHhcCCcHHHH
Confidence            999999999999999999999999999999999999876 5666666 688888  89999999999 5555 4588999


Q ss_pred             HHhhcCCCCCCCCCCccchhcccccc
Q 040660          162 VAVLPTGSRNPTKPFKLELAIYPSLL  187 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~  187 (487)
                      ++|+.+|++.+.++..+..++..+.+
T Consensus       272 ~~Ll~~gad~n~~d~~g~TpL~~A~~  297 (434)
T PHA02874        272 DILLYHKADISIKDNKGENPIDTAFK  297 (434)
T ss_pred             HHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence            99999999999998888877777654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.94  E-value=1.6e-26  Score=244.45  Aligned_cols=175  Identities=17%  Similarity=0.158  Sum_probs=155.5

Q ss_pred             CCCchHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc--HHHHHHHHHcCCCccccCCCCCCCcH
Q 040660            4 QQSKEELLYQQVN--YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL--YDVAKTLIELGAKVDAYRPGRHGGTP   79 (487)
Q Consensus         4 d~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~--~~~v~~Ll~~ga~~~~~~~d~~g~Tp   79 (487)
                      |..|.||||+|+.  .++.++|++|+++|+++|.+|..|.||||+|+.. |+  .++|++||++|+++|.+  |..|+||
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~-g~~~~eIVklLLe~GADVN~k--D~~G~TP  250 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLIT-GNVCASVIKKIIELGGDMDMK--CVNGMSP  250 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCCCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            6679999999875  4689999999999999999999999999999999 74  58999999999999998  8999999


Q ss_pred             HHHH-------------------------------------HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH--cC
Q 040660           80 LHHA-------------------------------------AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA--KG  120 (487)
Q Consensus        80 Lh~A-------------------------------------a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~--~g  120 (487)
                      ||+|                                     ++.|+.+++++|++.|++++.+|..|+||||+|+.  .+
T Consensus       251 Lh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~  330 (764)
T PHA02716        251 IMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNI  330 (764)
T ss_pred             HHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCC
Confidence            9975                                     44578899999999999999999999999999864  56


Q ss_pred             CHHHHHHHHhCCCcccccccccCCCCHHHHHhh-------------hcCCHHHHHHhhcCCCCCCCCCCccchhcc
Q 040660          121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAP-------------QLLSRKVWVAVLPTGSRNPTKPFKLELAIY  183 (487)
Q Consensus       121 ~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~-------------~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  183 (487)
                      +.++|++|+++|++++  .+|..|.||||+++.             ..++.+++++|+++|++.+.++..+..+++
T Consensus       331 ~~eIVklLLe~GADIN--~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        331 STDIIKLLHEYGNDLN--EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             CchHHHHHHHcCCCCc--cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            8999999999999999  999999999994332             136789999999999999988877777775

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.3e-26  Score=240.16  Aligned_cols=208  Identities=22%  Similarity=0.199  Sum_probs=156.1

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHH-----HHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIA-----ACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT   78 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~-----A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   78 (487)
                      +..+.||||+|++.|+.++|++|+++|++++..+..|.||||+     |+.. ++.+++++|+++|++++..  |..|.|
T Consensus        32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~-~~~~iv~~Ll~~ga~i~~~--d~~g~t  108 (480)
T PHA03100         32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLT-DVKEIVKLLLEYGANVNAP--DNNGIT  108 (480)
T ss_pred             hcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhh-chHHHHHHHHHCCCCCCCC--CCCCCc
Confidence            4567788888888888888888888888888888888888888     8888 8888888888888888776  778888


Q ss_pred             HHHHHH--HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC--CHHHHHHHHhCCCcccccccccCCCCHHHHHhhh
Q 040660           79 PLHHAA--KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG--FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ  154 (487)
Q Consensus        79 pLh~Aa--~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~  154 (487)
                      |||+|+  ..|+.+++++|+++|++++..|..|.||||+|+..|  +.+++++|+++|++++  .+|..|.|||| +|..
T Consensus       109 pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din--~~d~~g~tpL~-~A~~  185 (480)
T PHA03100        109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN--AKNRYGYTPLH-IAVE  185 (480)
T ss_pred             hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc--cccCCCCCHHH-HHHH
Confidence            888888  888888888888888888888888888888888888  7888888888888877  77778888888 7777


Q ss_pred             cCCHHHHHHhhcCCCCCCCCCCcc------chhccccccccc--hHHHHHHHh--cccCCCCCCCCCCceeee
Q 040660          155 LLSRKVWVAVLPTGSRNPTKPFKL------ELAIYPSLLDAR--PRMVIALWK--ANLEEPKFQHSDPSVTIV  217 (487)
Q Consensus       155 ~~~~~~~~~Ll~~g~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~l~~--~~~~~~~~~~~~~~~~i~  217 (487)
                      .++.+++++|+++|++.+..+..+      ...+..+...+.  ...+..|..  ..++..+..+.+|++...
T Consensus       186 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~  258 (480)
T PHA03100        186 KGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAV  258 (480)
T ss_pred             hCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            778888888888888776665444      444444444444  445554443  344455556666665544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.94  E-value=4.3e-26  Score=210.43  Aligned_cols=146  Identities=17%  Similarity=0.116  Sum_probs=133.1

Q ss_pred             CCCCchHHHHHHHHcC--CHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCC--CcHHHHHHHHHcCCCccccCCCCCCC
Q 040660            3 LQQSKEELLYQQVNYG--NVEGIKALCRDGAGLEWID-KEGKTPLIAACMNP--GLYDVAKTLIELGAKVDAYRPGRHGG   77 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g--~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~~~~~~d~~g~   77 (487)
                      .++.|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+...  ++.+++++|+++|+++|.+  |..|.
T Consensus        47 ~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~--d~~G~  124 (209)
T PHA02859         47 CNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEE--DEDGK  124 (209)
T ss_pred             cCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc--CCCCC
Confidence            4778999999999854  8999999999999999997 48999999988641  4799999999999999998  99999


Q ss_pred             cHHHHHHH--hCCHHHHHHHHHcCCCcccccCCCCCHHHH-HHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhh
Q 040660           78 TPLHHAAK--RGLERTVKLLLSYGANALVLNDDCQTPLEV-ARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAP  153 (487)
Q Consensus        78 TpLh~Aa~--~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~-A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~  153 (487)
                      ||||+|+.  .++.+++++|++.|++++.+|.+|.||||. |+..++.+++++|+++|++++  .+|..|.|||+ +|.
T Consensus       125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~--~~d~~g~tpl~-la~  200 (209)
T PHA02859        125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN--ETNKSGYNCYD-LIK  200 (209)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHh
Confidence            99999986  468999999999999999999999999995 567889999999999999999  99999999999 554

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=6.7e-27  Score=224.06  Aligned_cols=158  Identities=26%  Similarity=0.288  Sum_probs=150.4

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      -+|.+||..|+..||+++|+.|+.+|+++|......-|||..||.. |++++|++|+++|+|+++.  |..|.|.||+||
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfD-G~leivKyLvE~gad~~Ia--nrhGhTcLmIa~  158 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFD-GHLEIVKYLVEHGADPEIA--NRHGHTCLMIAC  158 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhc-chhHHHHHHHHcCCCCccc--ccCCCeeEEeee
Confidence            3578999999999999999999999999998888888999999999 9999999999999999998  999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660           85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV  164 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L  164 (487)
                      ..|+.+++++|++.|+|+|.++..|+|+||.+++.|+++++++|+++|+.+   ..|.+|.|||. .|+..++.++++.|
T Consensus       159 ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i---~~d~~GmtPL~-~Aa~tG~~~iVe~L  234 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI---DVDGHGMTPLL-LAAVTGHTDIVERL  234 (615)
T ss_pred             ccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee---eecCCCCchHH-HHhhhcchHHHHHH
Confidence            999999999999999999999999999999999999999999999999988   58888999999 99999999999999


Q ss_pred             hcCCC
Q 040660          165 LPTGS  169 (487)
Q Consensus       165 l~~g~  169 (487)
                      ++...
T Consensus       235 ~~~~~  239 (615)
T KOG0508|consen  235 LQCET  239 (615)
T ss_pred             hcCCc
Confidence            97433

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=8.1e-27  Score=217.00  Aligned_cols=158  Identities=27%  Similarity=0.387  Sum_probs=145.9

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCChHHHHHHhC----CCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDG-AGLEWIDKEGKTPLIAACMN----PGLYDVAKTLIELGAKVDAYRPGRHGGT   78 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~d~~G~TpL~~A~~~----~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   78 (487)
                      |.+|+|+||||+.++++++|+.||+.| +++|.+|.-|+||+|+++..    ..+.++|..|.+.| |+|++ ....|.|
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaK-AsQ~gQT  342 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAK-ASQHGQT  342 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchh-hhhhcch
Confidence            789999999999999999999999997 78999999999999999865    25678999999995 88887 4788999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhC-CCcccccccccCCCCHHHHHhhhcCC
Q 040660           79 PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH-ICIFSGWLRELYGPGFLELLAPQLLS  157 (487)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~G~t~L~~~a~~~~~  157 (487)
                      +||+|+.+|+.++|+.||.+|+|+|++|.+|.|+||+|+++||.+||++||.. ++++.  +.|.+|.|+|. +|...++
T Consensus       343 ALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s--LtD~DgSTAl~-IAleagh  419 (452)
T KOG0514|consen  343 ALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS--LTDVDGSTALS-IALEAGH  419 (452)
T ss_pred             hhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce--eecCCCchhhh-hHHhcCc
Confidence            99999999999999999999999999999999999999999999999999966 57887  99999999999 9999999


Q ss_pred             HHHHHHhhc
Q 040660          158 RKVWVAVLP  166 (487)
Q Consensus       158 ~~~~~~Ll~  166 (487)
                      .||..+|..
T Consensus       420 ~eIa~mlYa  428 (452)
T KOG0514|consen  420 REIAVMLYA  428 (452)
T ss_pred             hHHHHHHHH
Confidence            999887754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.4e-26  Score=221.96  Aligned_cols=190  Identities=23%  Similarity=0.226  Sum_probs=164.6

Q ss_pred             CCCCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCcc--------CCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCC
Q 040660            2 GLQQSKEELLYQQVNYGNVEGIKALCRD-GAGLEWI--------DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP   72 (487)
Q Consensus         2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~--------d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~   72 (487)
                      +.+.+|.|||.+||++||.++|++|+++ ++++...        .-.|-+||-.|+.. ||+++|++|+++|+++|..  
T Consensus        37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaA-GHl~vVk~L~~~ga~VN~t--  113 (615)
T KOG0508|consen   37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAA-GHLEVVKLLLRRGASVNDT--  113 (615)
T ss_pred             ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhcc-CcHHHHHHHHHhcCccccc--
Confidence            5678899999999999999999999995 7776542        23678888887777 9999999999999999986  


Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHh
Q 040660           73 GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLA  152 (487)
Q Consensus        73 d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a  152 (487)
                      .....|||--||..|+.++|++|+++|+|+++.|..|.|.||+|+.+||.+|+++|++.|++++  .++..|+|+|| .+
T Consensus       114 T~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn--~ks~kGNTALH-~c  190 (615)
T KOG0508|consen  114 TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN--AKSYKGNTALH-DC  190 (615)
T ss_pred             cccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc--hhcccCchHHH-hh
Confidence            7788899999999999999999999999999999999999999999999999999999999999  99999999999 89


Q ss_pred             hhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          153 PQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       153 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                      +..++.+++++|+.+|+.+.... .+-..+..+...+....+..|.
T Consensus       191 aEsG~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  191 AESGSVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             hhcccHHHHHHHHhCCceeeecC-CCCchHHHHhhhcchHHHHHHh
Confidence            99999999999999999875444 3544444444444444444443

>PHA02946 ankyin-like protein; Provisional

Probab=99.94  E-value=1.6e-25  Score=229.44  Aligned_cols=206  Identities=14%  Similarity=0.120  Sum_probs=175.1

Q ss_pred             chHHHHHHH--HcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660            7 KEELLYQQV--NYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus         7 g~t~L~~Aa--~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      +.++||.++  ..++.++|++|+++|+++|.+|..|+||||+|+.. |+.+++++||++|++++.+  |..|.||||+|+
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~-g~~eiv~lLL~~GAdin~~--d~~g~TpLh~A~  113 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKI-NNNRIVAMLLTHGADPNAC--DKQHKTPLYYLS  113 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHH
Confidence            358999876  44578999999999999999999999999999999 9999999999999999998  999999999999


Q ss_pred             HhCC--HHHHHHHHHcCCCccc-ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh--cCCHH
Q 040660           85 KRGL--ERTVKLLLSYGANALV-LNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ--LLSRK  159 (487)
Q Consensus        85 ~~g~--~~~v~~Ll~~ga~~~~-~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~--~~~~~  159 (487)
                      ..++  .+++++|+++|++++. .|.+|.|||| |+..++.+++++|+++|++++  .+|..|.|||| .|..  ..+.+
T Consensus       114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~--~~d~~G~t~Lh-~A~~~~~~~~~  189 (446)
T PHA02946        114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR--IVDKFGKNHIH-RHLMSDNPKAS  189 (446)
T ss_pred             HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc--ccCCCCCCHHH-HHHHhcCCCHH
Confidence            8764  7999999999999995 6899999997 667799999999999999999  99999999999 4443  34578


Q ss_pred             HHHHhhcCCCCCCCCCCccchhcccccccc--chHHHHHHH-hcccCCCCCCCCCCceeeecC
Q 040660          160 VWVAVLPTGSRNPTKPFKLELAIYPSLLDA--RPRMVIALW-KANLEEPKFQHSDPSVTIVDN  219 (487)
Q Consensus       160 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~-~~~~~~~~~~~~~~~~~i~~~  219 (487)
                      ++++|+++|++.+.++..+..+++.+...+  ....+..|. ...++..+..+.+|+.+....
T Consensus       190 ~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~  252 (446)
T PHA02946        190 TISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKT  252 (446)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence            999999999999999988888888877643  334443333 556667777788887765543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.7e-25  Score=233.42  Aligned_cols=194  Identities=16%  Similarity=0.146  Sum_probs=167.2

Q ss_pred             CCCCchHHHHHHHHc-----CCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCC--CcHHHHHHHHHcCCCccccCCCCC
Q 040660            3 LQQSKEELLYQQVNY-----GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNP--GLYDVAKTLIELGAKVDAYRPGRH   75 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~-----g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~~~~~~d~~   75 (487)
                      .|..|.||||+|+..     ++.+++++|+++|+++|.+|..|.||||+|+..+  ++.+++++|+++|++++.+  |..
T Consensus        67 ~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~--d~~  144 (489)
T PHA02798         67 LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLL--DKD  144 (489)
T ss_pred             CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcccc--CCC
Confidence            467899999998864     6789999999999999999999999999999872  3789999999999999998  899


Q ss_pred             CCcHHHHHHHhCC---HHHHHHHHHcCCCccccc-CCCCCHHHHHHHc----CCHHHHHHHHhCCCcccc----------
Q 040660           76 GGTPLHHAAKRGL---ERTVKLLLSYGANALVLN-DDCQTPLEVARAK----GFTNVVRAIENHICIFSG----------  137 (487)
Q Consensus        76 g~TpLh~Aa~~g~---~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~----g~~~~v~~Ll~~ga~~~~----------  137 (487)
                      |.||||+|++.|+   .+++++|++.|++++..+ ..|.||||.++..    ++.+++++|+++|++++.          
T Consensus       145 g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~  224 (489)
T PHA02798        145 GFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFM  224 (489)
T ss_pred             CCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHH
Confidence            9999999999988   899999999999999885 5789999988764    478999999998876541          


Q ss_pred             ---------------------------cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccc
Q 040660          138 ---------------------------WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDAR  190 (487)
Q Consensus       138 ---------------------------~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                                                 ..+|..|.|||| .|+..++.+++++|++.|++.+..+..+..+++.+...+.
T Consensus       225 ~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~-~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~  303 (489)
T PHA02798        225 EYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLY-YSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES  303 (489)
T ss_pred             HHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHH-HHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc
Confidence                                       135678999999 8889999999999999999999999888888888887777


Q ss_pred             hHHHHHHHh
Q 040660          191 PRMVIALWK  199 (487)
Q Consensus       191 ~~~~~~l~~  199 (487)
                      ...+..+..
T Consensus       304 ~~iv~~lL~  312 (489)
T PHA02798        304 KFIFNSILN  312 (489)
T ss_pred             HHHHHHHHc
Confidence            777666543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.7e-25  Score=231.61  Aligned_cols=209  Identities=19%  Similarity=0.156  Sum_probs=164.9

Q ss_pred             CCCchHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC-cHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660            4 QQSKEELLYQQVNYG---NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG-LYDVAKTLIELGAKVDAYRPGRHGGTP   79 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g-~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   79 (487)
                      +..|.||||+|+..|   +.+++++|++.|+++|.+|..|.||||+|+.. | +.+++++|+++|++++.+  |..|.||
T Consensus        44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~-~~~~~iv~lLl~~ga~in~~--~~~g~tp  120 (471)
T PHA03095         44 GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN-ATTLDVIKLLIKAGADVNAK--DKVGRTP  120 (471)
T ss_pred             CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCcHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            667899999999988   99999999999999999999999999999999 7 699999999999999988  8899999


Q ss_pred             HHHHH--HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC--CHHHHHHHHhCCCcccccccccCCCCHHHHHhh-h
Q 040660           80 LHHAA--KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG--FTNVVRAIENHICIFSGWLRELYGPGFLELLAP-Q  154 (487)
Q Consensus        80 Lh~Aa--~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~-~  154 (487)
                      ||+|+  ..++.+++++|++.|++++.+|..|.||||+|+..+  +.+++++|+++|++++  ..|..|.||||.++. .
T Consensus       121 Lh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~--~~d~~g~t~Lh~~~~~~  198 (471)
T PHA03095        121 LHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY--AVDDRFRSLLHHHLQSF  198 (471)
T ss_pred             HHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHHC
Confidence            99999  556889999999999999999999999999988766  5788999999998887  668888888884332 2


Q ss_pred             cCCHHHHHHhhcCCCCCCCCCCccchhccccccccchH--HHHHH--HhcccCCCCCCCCCCceeee
Q 040660          155 LLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPR--MVIAL--WKANLEEPKFQHSDPSVTIV  217 (487)
Q Consensus       155 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l--~~~~~~~~~~~~~~~~~~i~  217 (487)
                      .+..++++.|+..|++.+.++..+..+++.+...+...  .+..+  .+..++..+..+.+|++...
T Consensus       199 ~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~  265 (471)
T PHA03095        199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAA  265 (471)
T ss_pred             CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            45677788888888877777766666666655433221  12112  24445555556666665544

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=2.3e-25  Score=221.24  Aligned_cols=166  Identities=15%  Similarity=0.047  Sum_probs=148.3

Q ss_pred             CCCchHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-C---CCCCC
Q 040660            4 QQSKEELLYQQVN--YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-P---GRHGG   77 (487)
Q Consensus         4 d~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-~---d~~g~   77 (487)
                      +++++|+||+++.  .|+.++|++|+++|++++..  ++.||||+|+.. ++.+++++|+++|++.+... .   +..|.
T Consensus       113 ~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~-~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~  189 (437)
T PHA02795        113 CNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK-KESSVVEFILNCGIPDENDVKLDLYKIIQY  189 (437)
T ss_pred             cccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc-CcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence            5678999999999  89999999999999999874  458999999999 99999999999998543220 0   13488


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcC-
Q 040660           78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLL-  156 (487)
Q Consensus        78 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~-  156 (487)
                      |++|.|+..++.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| .|+..+ 
T Consensus       190 t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh-~Aa~~g~  266 (437)
T PHA02795        190 TRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLD-VAVDRGS  266 (437)
T ss_pred             chhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999  99999999999 666655 


Q ss_pred             -------CHHHHHHhhcCCCCCCCCC
Q 040660          157 -------SRKVWVAVLPTGSRNPTKP  175 (487)
Q Consensus       157 -------~~~~~~~Ll~~g~~~~~~~  175 (487)
                             +.+++++|+.+|++.+...
T Consensus       267 ~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        267 VIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             cccccccHHHHHHHHHhCCCCCCchh
Confidence                   4799999999999876544

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.93  E-value=1.9e-25  Score=236.26  Aligned_cols=164  Identities=17%  Similarity=0.115  Sum_probs=146.4

Q ss_pred             CCCCchHHHHHHHHcCC--HHHHHHHHHcCCCCCccCCCCChHHHHHH--------------------------------
Q 040660            3 LQQSKEELLYQQVNYGN--VEGIKALCRDGAGLEWIDKEGKTPLIAAC--------------------------------   48 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~--~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~--------------------------------   48 (487)
                      .|..|.||||+|++.|+  .++|++||++|+++|.+|..|+||||+|+                                
T Consensus       208 kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~  287 (764)
T PHA02716        208 QNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHS  287 (764)
T ss_pred             CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHH
Confidence            36789999999999995  59999999999999999999999999753                                


Q ss_pred             -----hCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH--hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH---
Q 040660           49 -----MNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK--RGLERTVKLLLSYGANALVLNDDCQTPLEVARA---  118 (487)
Q Consensus        49 -----~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~--~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~---  118 (487)
                           .. |+.+++++|+++|++++.+  |..|+||||+|+.  .++.+++++|++.|++++.+|..|+||||+|+.   
T Consensus       288 ~i~AA~~-g~leiVklLLe~GAdIN~k--D~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~la  364 (764)
T PHA02716        288 YITLARN-IDISVVYSFLQPGVKLHYK--DSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLS  364 (764)
T ss_pred             HHHHHHc-CCHHHHHHHHhCCCceecc--CCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhh
Confidence                 44 7789999999999999998  9999999999875  468899999999999999999999999999875   


Q ss_pred             -----------cCCHHHHHHHHhCCCcccccccccCCCCHHHHH---hhhcCCHHHHHHhhcCCCCC
Q 040660          119 -----------KGFTNVVRAIENHICIFSGWLRELYGPGFLELL---APQLLSRKVWVAVLPTGSRN  171 (487)
Q Consensus       119 -----------~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~---a~~~~~~~~~~~Ll~~g~~~  171 (487)
                                 .++.++|++|+++|++++  .+|..|.||||.+   +...++.+++++|++.|+..
T Consensus       365 v~~~ld~~~~~~~~~eVVklLL~~GADIn--~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~  429 (764)
T PHA02716        365 VVNILDPETDNDIRLDVIQCLISLGADIT--AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLN  429 (764)
T ss_pred             hhccccccccccChHHHHHHHHHCCCCCC--CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchh
Confidence                       378999999999999999  9999999999932   33457799999999988754

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.93  E-value=1.3e-25  Score=228.27  Aligned_cols=177  Identities=25%  Similarity=0.239  Sum_probs=159.4

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCC---------------CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCc
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAG---------------LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV   67 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---------------~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~   67 (487)
                      .+++|.||||.|+..|+.+.++.+|+.|..               +|..|++|.|||||||+. |+.+.++.|+..|+++
T Consensus       221 ~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~-G~~~svd~Ll~~Ga~I  299 (929)
T KOG0510|consen  221 DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQ-GGPESVDNLLGFGASI  299 (929)
T ss_pred             ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHc-CChhHHHHHHHcCCcc
Confidence            467899999999999999999999998643               355789999999999999 9999999999999999


Q ss_pred             cccCCCCCCCcHHHHHHHhCCHHHHHHHHH-cC-CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-cccccCC
Q 040660           68 DAYRPGRHGGTPLHHAAKRGLERTVKLLLS-YG-ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSG-WLRELYG  144 (487)
Q Consensus        68 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~g-a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~d~~G  144 (487)
                      +.+  +.++.||||.||.+|++++|+-||+ .| ...+..|-.|.||||+|+..||..++++|+++|+++.. ...|.+|
T Consensus       300 ~~k--n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg  377 (929)
T KOG0510|consen  300 NSK--NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDG  377 (929)
T ss_pred             ccc--CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCC
Confidence            998  8999999999999999999999999 55 55788999999999999999999999999999999762 1349999


Q ss_pred             CCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhcc
Q 040660          145 PGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIY  183 (487)
Q Consensus       145 ~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~  183 (487)
                      .|||| .|+..++..++++|+.+|+++..++..+..++.
T Consensus       378 ~TaLH-~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  378 NTALH-LAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             chhhh-HHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence            99999 999999999999999999999877755555554

>PHA03095 ankyrin-like protein; Provisional

Probab=99.93  E-value=5.8e-25  Score=229.08  Aligned_cols=209  Identities=21%  Similarity=0.189  Sum_probs=151.8

Q ss_pred             CCCCchHHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCChHHHHHH--hCCCcHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660            3 LQQSKEELLYQQVNYG-NVEGIKALCRDGAGLEWIDKEGKTPLIAAC--MNPGLYDVAKTLIELGAKVDAYRPGRHGGTP   79 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~--~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   79 (487)
                      .|..|.||||+|+..| +.+++++|+++|++++.+|..|.||||+|+  .. ++.+++++|+++|++++..  |..|.||
T Consensus        79 ~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~-~~~~iv~~Ll~~gad~~~~--d~~g~tp  155 (471)
T PHA03095         79 PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFN-INPKVIRLLLRKGADVNAL--DLYGMTP  155 (471)
T ss_pred             CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCc-CCHHHHHHHHHcCCCCCcc--CCCCCCH
Confidence            3568999999999999 599999999999999999999999999999  44 6789999999999999887  8888888


Q ss_pred             HHHHHHhC--CHHHHHHHHHcCCCcccccCCCCCHHHHHHHc--CCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhc
Q 040660           80 LHHAAKRG--LERTVKLLLSYGANALVLNDDCQTPLEVARAK--GFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL  155 (487)
Q Consensus        80 Lh~Aa~~g--~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~  155 (487)
                      ||+|+..+  +.+++++|+++|++++..|..|+||||+|+..  ++.+++++|+++|++++  .+|..|.|||| +|+..
T Consensus       156 L~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~--~~d~~g~tpLh-~Aa~~  232 (471)
T PHA03095        156 LAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA--ATDMLGNTPLH-SMATG  232 (471)
T ss_pred             HHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhc
Confidence            88887765  56778888887777777777777777777653  56677777777777766  66666667776 44444


Q ss_pred             CCH--HHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH--hcccCCCCCCCCCCceeee
Q 040660          156 LSR--KVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW--KANLEEPKFQHSDPSVTIV  217 (487)
Q Consensus       156 ~~~--~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~i~  217 (487)
                      +..  .++..|+..|++.+.++..+..+++.+...+....+..|.  ++.+...+..+.+|+....
T Consensus       233 ~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~  298 (471)
T PHA03095        233 SSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMV  298 (471)
T ss_pred             CCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            432  4556666666666666666666666666655555555554  3344444555566655443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1e-24  Score=236.89  Aligned_cols=207  Identities=20%  Similarity=0.163  Sum_probs=166.8

Q ss_pred             CCCchHHHHHHHHcCCH-HHHHHHHHcCCCCCccCCCCChHHHHHHhCCC-cHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            4 QQSKEELLYQQVNYGNV-EGIKALCRDGAGLEWIDKEGKTPLIAACMNPG-LYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~-~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g-~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      |..|.||||+|+..|+. +++++|++.|++++.+|..|.||||+|+.. | ..+++++|+..|++++..  |..|.||||
T Consensus       270 d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~-g~~~~~v~~Ll~~gadin~~--d~~g~TpLh  346 (682)
T PHA02876        270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKN-GYDTENIRTLIMLGADVNAA--DRLYITPLH  346 (682)
T ss_pred             CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh-CCCHHHHHHHHHcCCCCCCc--ccCCCcHHH
Confidence            56788999999998886 588888999999999999999999999998 6 688999999999999887  888999999


Q ss_pred             HHHHh-CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHH
Q 040660           82 HAAKR-GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKV  160 (487)
Q Consensus        82 ~Aa~~-g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~  160 (487)
                      +|+.. ++.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++  ..+..|.||||+++...+...+
T Consensus       347 ~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~Lh~A~~~~~~~~~  424 (682)
T PHA02876        347 QASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTALHFALCGTNPYMS  424 (682)
T ss_pred             HHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchHHHHHHcCCHHHH
Confidence            99885 46788899999999999999999999999999999999999999999888  8888888999944444555677


Q ss_pred             HHHhhcCCCCCCCCCCccchhcccccccc-chHHHHHHH--hcccCCCCCCCCCCcee
Q 040660          161 WVAVLPTGSRNPTKPFKLELAIYPSLLDA-RPRMVIALW--KANLEEPKFQHSDPSVT  215 (487)
Q Consensus       161 ~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~~~~~~~~~~~~~~~~~  215 (487)
                      +++|+..|++.+.++..+..+++.+...+ ....+..|.  ++.++..+..+.+|+..
T Consensus       425 vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~  482 (682)
T PHA02876        425 VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLI  482 (682)
T ss_pred             HHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            88888999988888888888888777644 344444443  34444455555555543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.2e-24  Score=236.28  Aligned_cols=180  Identities=25%  Similarity=0.215  Sum_probs=165.0

Q ss_pred             CCCCchHHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            3 LQQSKEELLYQQVNYG-NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      .|..|+||||+|+..| +.++++.|+..|++++.+|..|.||||+|+..+++.+++++|++.|++++.+  |..|.||||
T Consensus       303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~--d~~G~TpLh  380 (682)
T PHA02876        303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNAR--DYCDKTPIH  380 (682)
T ss_pred             cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccC--CCCCCCHHH
Confidence            4678999999999999 6999999999999999999999999999999757899999999999999998  999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCC-HHHHHHHHhCCCcccccccccCCCCHHHHHhhhc-CCHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF-TNVVRAIENHICIFSGWLRELYGPGFLELLAPQL-LSRK  159 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~-~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~-~~~~  159 (487)
                      +|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|++++  .+|..|.|||| +|+.. ...+
T Consensus       381 ~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin--~~d~~G~TpLh-~Aa~~~~~~~  457 (682)
T PHA02876        381 YAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN--SKNKDLSTPLH-YACKKNCKLD  457 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC--cCCCCCChHHH-HHHHhCCcHH
Confidence            9999999999999999999999999999999999998666 578999999999999  99999999999 66554 4789


Q ss_pred             HHHHhhcCCCCCCCCCCccchhcccccc
Q 040660          160 VWVAVLPTGSRNPTKPFKLELAIYPSLL  187 (487)
Q Consensus       160 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~  187 (487)
                      ++++|++.|++.+..+..+.+.++.+..
T Consensus       458 iv~lLl~~Gad~n~~d~~g~tpl~~a~~  485 (682)
T PHA02876        458 VIEMLLDNGADVNAINIQNQYPLLIALE  485 (682)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            9999999999999888777777766554

>PHA02798 ankyrin-like protein; Provisional

Probab=99.92  E-value=9.7e-25  Score=227.82  Aligned_cols=165  Identities=18%  Similarity=0.166  Sum_probs=149.7

Q ss_pred             CCCCchHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc---HHHHHHHHHcCCCccccCCCCCC
Q 040660            3 LQQSKEELLYQQVNYG---NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL---YDVAKTLIELGAKVDAYRPGRHG   76 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~---~~~v~~Ll~~ga~~~~~~~d~~g   76 (487)
                      .|.+|+||||+|+..|   +.+++++|+++|++++.+|..|.||||+|+.. ++   .+++++|+++|++++..+ +..|
T Consensus       105 ~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~-~~~~~~~vv~~Ll~~gadin~~~-~~~~  182 (489)
T PHA02798        105 KNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQS-NHHIDIEIIKLLLEKGVDINTHN-NKEK  182 (489)
T ss_pred             CCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-CCcchHHHHHHHHHhCCCccccc-CcCC
Confidence            4678999999999886   78999999999999999999999999999999 77   999999999999999873 4679


Q ss_pred             CcHHHHHHHhC----CHHHHHHHHHcCCC---------------------------------------cccccCCCCCHH
Q 040660           77 GTPLHHAAKRG----LERTVKLLLSYGAN---------------------------------------ALVLNDDCQTPL  113 (487)
Q Consensus        77 ~TpLh~Aa~~g----~~~~v~~Ll~~ga~---------------------------------------~~~~d~~g~TpL  113 (487)
                      .||||.++..+    +.+++++|+++|++                                       +|.+|..|+|||
T Consensus       183 ~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL  262 (489)
T PHA02798        183 YDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPL  262 (489)
T ss_pred             CcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHH
Confidence            99999987653    78899998887764                                       455677899999


Q ss_pred             HHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCC
Q 040660          114 EVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNP  172 (487)
Q Consensus       114 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~  172 (487)
                      |+|+.+|+.+++++|+++|++++  .+|..|.|||| .|...++.++++.|++.+++.+
T Consensus       263 ~~A~~~~~~~~v~~LL~~GAdin--~~d~~G~TpL~-~A~~~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        263 YYSVSHNNRKIFEYLLQLGGDIN--IITELGNTCLF-TAFENESKFIFNSILNKKPNKN  318 (489)
T ss_pred             HHHHHcCcHHHHHHHHHcCCccc--ccCCCCCcHHH-HHHHcCcHHHHHHHHccCCCHH
Confidence            99999999999999999999999  99999999999 8999999999999999998874

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=7.3e-25  Score=222.74  Aligned_cols=125  Identities=26%  Similarity=0.236  Sum_probs=112.2

Q ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHh-CCC-cccccccccCCCCHHH
Q 040660           72 PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN-HIC-IFSGWLRELYGPGFLE  149 (487)
Q Consensus        72 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~ga-~~~~~~~d~~G~t~L~  149 (487)
                      .|.+|.||||+|++.|+.+.|..|+..|++++.+++++.||||.|+.+|+++.|+-|++ .+- ..+  ..|..|+||||
T Consensus       269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rlln--e~D~~g~tpLH  346 (929)
T KOG0510|consen  269 EDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLN--ESDLHGMTPLH  346 (929)
T ss_pred             ccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccc--cccccCCCchh
Confidence            48999999999999999999999999999999999999999999999999999999999 443 344  88999999999


Q ss_pred             HHhhhcCCHHHHHHhhcCCCCCC---CCCCccchhccccccccchHHHHHHHh
Q 040660          150 LLAPQLLSRKVWVAVLPTGSRNP---TKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       150 ~~a~~~~~~~~~~~Ll~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                       +|+..++.+++++|+..|+...   +.+..+.++++.+...+.+..+..|..
T Consensus       347 -laa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~  398 (929)
T KOG0510|consen  347 -LAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS  398 (929)
T ss_pred             -hhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH
Confidence             8889999999999999999876   457788888888888888888877763

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=5.1e-24  Score=234.64  Aligned_cols=163  Identities=15%  Similarity=0.148  Sum_probs=153.7

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      .++.++||.||..|+.++++.|++.|+++|..|..|.||||+|+.. |+.+++++|+++|+++|.+  |.+|.||||+|+
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadin~~--d~~G~TpL~~A~  599 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK-GYEDCVLVLLKHACNVHIR--DANGNTALWNAI  599 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCCc--CCCCCCHHHHHH
Confidence            3567999999999999999999999999999999999999999999 9999999999999999998  999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660           85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV  164 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L  164 (487)
                      ..|+.+++++|++.++..+  ...|.++||+|+.+|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|
T Consensus       600 ~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin--~~d~~G~TpLh-~A~~~g~~~iv~~L  674 (823)
T PLN03192        600 SAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD--SEDHQGATALQ-VAMAEDHVDMVRLL  674 (823)
T ss_pred             HhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCcHHHHHHH
Confidence            9999999999999887654  3467799999999999999999999999999  99999999999 89999999999999


Q ss_pred             hcCCCCCCCCC
Q 040660          165 LPTGSRNPTKP  175 (487)
Q Consensus       165 l~~g~~~~~~~  175 (487)
                      +.+|++.+..+
T Consensus       675 l~~GAdv~~~~  685 (823)
T PLN03192        675 IMNGADVDKAN  685 (823)
T ss_pred             HHcCCCCCCCC
Confidence            99999987666

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.91  E-value=9.4e-24  Score=220.68  Aligned_cols=191  Identities=16%  Similarity=0.150  Sum_probs=156.8

Q ss_pred             CchHHHHHHHH------cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCC--CcHHHHHHHHHcCCCc-cccCCCCCC
Q 040660            6 SKEELLYQQVN------YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNP--GLYDVAKTLIELGAKV-DAYRPGRHG   76 (487)
Q Consensus         6 ~g~t~L~~Aa~------~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~-~~~~~d~~g   76 (487)
                      .+.||||.|+.      .|+.++|++||++|+++|.+|..|.||||+|+...  ++.+++++|+++|+++ +.+  |..|
T Consensus        68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~--d~~g  145 (494)
T PHA02989         68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVK--NSRG  145 (494)
T ss_pred             CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCccccc--CCCC
Confidence            56889998875      47888999999999999999999999998876542  5688999999999998 676  8889


Q ss_pred             CcHHHHHHHh--CCHHHHHHHHHcCCCccc-ccCCCCCHHHHHHHcC----CHHHHHHHHhCCCcccc------------
Q 040660           77 GTPLHHAAKR--GLERTVKLLLSYGANALV-LNDDCQTPLEVARAKG----FTNVVRAIENHICIFSG------------  137 (487)
Q Consensus        77 ~TpLh~Aa~~--g~~~~v~~Ll~~ga~~~~-~d~~g~TpL~~A~~~g----~~~~v~~Ll~~ga~~~~------------  137 (487)
                      +||||+|+..  ++.++|++|+++|++++. .+..|.||||+|+..+    +.++|++|+++|++++.            
T Consensus       146 ~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~  225 (494)
T PHA02989        146 YNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESF  225 (494)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHH
Confidence            9999988764  578899999999999888 6788999999887654    78899999988887651            


Q ss_pred             ------------------------cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHH
Q 040660          138 ------------------------WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRM  193 (487)
Q Consensus       138 ------------------------~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~  193 (487)
                                              ..+|..|.|||| +|+..++.+++++|++.|++.+.++..+..++..+...+....
T Consensus       226 ~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~-~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~i  304 (494)
T PHA02989        226 LDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLL-ISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDM  304 (494)
T ss_pred             HHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHH-HHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence                                    134567999999 8888899999999999999999888888888888887777777


Q ss_pred             HHHHHh
Q 040660          194 VIALWK  199 (487)
Q Consensus       194 ~~~l~~  199 (487)
                      +..+..
T Consensus       305 v~~LL~  310 (494)
T PHA02989        305 LNRILQ  310 (494)
T ss_pred             HHHHHh
Confidence            665554

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.7e-23  Score=218.76  Aligned_cols=170  Identities=20%  Similarity=0.192  Sum_probs=144.4

Q ss_pred             CCchHHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCC-----CcHHHHHHHHHcCCCccccCCCCCCC
Q 040660            5 QSKEELLYQQVNY--GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNP-----GLYDVAKTLIELGAKVDAYRPGRHGG   77 (487)
Q Consensus         5 ~~g~t~L~~Aa~~--g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~-----g~~~~v~~Ll~~ga~~~~~~~d~~g~   77 (487)
                      .+|.|+||+++..  ++.++|++||++|+++|.++ .|.||||+|+...     ++.+++++|+++|+++|.+  |..|.
T Consensus        33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~--d~~g~  109 (494)
T PHA02989         33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLK--TFNGV  109 (494)
T ss_pred             cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCC--CCCCC
Confidence            3588888765544  47899999999999999886 5799999998751     3578999999999999998  89999


Q ss_pred             cHHHHHHHh---CCHHHHHHHHHcCCCc-ccccCCCCCHHHHHHHc--CCHHHHHHHHhCCCcccccc-cccCCCCHHHH
Q 040660           78 TPLHHAAKR---GLERTVKLLLSYGANA-LVLNDDCQTPLEVARAK--GFTNVVRAIENHICIFSGWL-RELYGPGFLEL  150 (487)
Q Consensus        78 TpLh~Aa~~---g~~~~v~~Ll~~ga~~-~~~d~~g~TpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~-~d~~G~t~L~~  150 (487)
                      ||||.|+..   |+.+++++|+++|+|+ +.+|..|+||||+|+..  ++.++|++|+++|++++  . .+..|.|||| 
T Consensus       110 tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~--~~~~~~g~tpL~-  186 (494)
T PHA02989        110 SPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLF--EKTSLYGLTPMN-  186 (494)
T ss_pred             cHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--ccccccCCChHH-
Confidence            999988765   6789999999999999 89999999999998764  68999999999999998  6 6789999999 


Q ss_pred             Hhhh----cCCHHHHHHhhcCCCCCCCCCCccch
Q 040660          151 LAPQ----LLSRKVWVAVLPTGSRNPTKPFKLEL  180 (487)
Q Consensus       151 ~a~~----~~~~~~~~~Ll~~g~~~~~~~~~~~~  180 (487)
                      .+..    .++.+++++|++.|++.+..+.....
T Consensus       187 ~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t  220 (494)
T PHA02989        187 IYLRNDIDVISIKVIKYLIKKGVNIETNNNGSES  220 (494)
T ss_pred             HHHhcccccccHHHHHHHHhCCCCccccCCcccc
Confidence            5543    35899999999999998877743333

>PHA02917 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.8e-23  Score=222.52  Aligned_cols=189  Identities=16%  Similarity=0.100  Sum_probs=148.1

Q ss_pred             CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHH----HHHHHHHcCCCccccCCCCC
Q 040660            3 LQQSKEELLYQQVNY---GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYD----VAKTLIELGAKVDAYRPGRH   75 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~----~v~~Ll~~ga~~~~~~~d~~   75 (487)
                      .|++|+||||+|++.   |+.++|++||+.|++++.+|..|.||||+|+.. |+.+    ++++|++.+...+..  +  
T Consensus        28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~-g~~~v~~~~~~~Ll~~~~~~n~~--~--  102 (661)
T PHA02917         28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS-RHVKVNKDIAMALLEATGYSNIN--D--  102 (661)
T ss_pred             cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-CChhHHHHHHHHHHhccCCCCCC--C--
Confidence            378899999998665   889999999999999999999999999999998 8744    557788775545543  3  


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHH--HcCCHHHHHHHHhCCCcccccccc---cCC------
Q 040660           76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVAR--AKGFTNVVRAIENHICIFSGWLRE---LYG------  144 (487)
Q Consensus        76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~--~~g~~~~v~~Ll~~ga~~~~~~~d---~~G------  144 (487)
                      ..+++|+|+..|+.++|++|+++|+|++.+|.+|+||||+|+  ..|+.++|++|+++|++++  .+|   ..|      
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn--~~d~~~~~g~~~~~~  180 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL--YEDEDDEYGYAYDDY  180 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc--ccccccccccccccc
Confidence            236778888888999999999999999999999999998543  5788999999999999887  443   233      


Q ss_pred             -----CCHHHHHhh----------hcCCHHHHHHhhcCCCCCCCCCCccchhccccccccch--HHHHHHH
Q 040660          145 -----PGFLELLAP----------QLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARP--RMVIALW  198 (487)
Q Consensus       145 -----~t~L~~~a~----------~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~  198 (487)
                           .||||+++.          ..++.+++++|+++|++++.++..+...++.+...+..  ..+..|.
T Consensus       181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li  251 (661)
T PHA02917        181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLM  251 (661)
T ss_pred             cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHH
Confidence                 599994332          14578899999999999888887777777777765543  4555443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=1.4e-23  Score=186.46  Aligned_cols=138  Identities=18%  Similarity=0.191  Sum_probs=119.2

Q ss_pred             CCCCchHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHH---HHHHHHHcCCCccccCCC-C
Q 040660            3 LQQSKEELLYQQVNYGNV----EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYD---VAKTLIELGAKVDAYRPG-R   74 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~---~v~~Ll~~ga~~~~~~~d-~   74 (487)
                      ++.++.+.||+|++.|+.    +++++|++.|++++.+|..|+||||+|+.. |+.+   ++++|+++|++++.+  | .
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~-g~~~~~~~i~~Ll~~Gadin~~--d~~   92 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWY-DRANAVMKIELLVNMGADINAR--ELG   92 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHh-CccCHHHHHHHHHHcCCCCCCC--CCC
Confidence            566778899999999998    566677788888998999999999999998 7654   478999999999987  6 5


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHH-cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCC
Q 040660           75 HGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGP  145 (487)
Q Consensus        75 ~g~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~  145 (487)
                      .|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..++.+++++|+++|++++  ..+..|.
T Consensus        93 ~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~  162 (166)
T PHA02743         93 TGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD--DPLSIGL  162 (166)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcccCCc
Confidence            89999999999999999999995 799999999999999999999999999999999999988  6665553

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=8.5e-24  Score=184.13  Aligned_cols=164  Identities=23%  Similarity=0.225  Sum_probs=90.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      |.+|+++++.++-.|+.+.+..+|.+|+..|..+..+.+|+++++.. .+++++..|.+.  .+|.-  |+.|.|||+||
T Consensus        93 ~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq-l~L~~~~~~~~n--~VN~~--De~GfTpLiWA  167 (296)
T KOG0502|consen   93 DPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ-LHLDVVDLLVNN--KVNAC--DEFGFTPLIWA  167 (296)
T ss_pred             CchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH-HHHHHHHHHhhc--cccCc--cccCchHhHHH
Confidence            44455666666655655555555555555555555555555555555 454444444433  23333  55555555555


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVA  163 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~  163 (487)
                      +..|++++|++||+.|+|+++..+...++|++|.+.|..++|++|+.++.++|  ..|-+|.|||- +|.+.++.++++.
T Consensus       168 aa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN--vyDwNGgTpLl-yAvrgnhvkcve~  244 (296)
T KOG0502|consen  168 AAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN--VYDWNGGTPLL-YAVRGNHVKCVES  244 (296)
T ss_pred             HhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc--eeccCCCceee-eeecCChHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555  55555555555 5555555555555


Q ss_pred             hhcCCCCCCCCC
Q 040660          164 VLPTGSRNPTKP  175 (487)
Q Consensus       164 Ll~~g~~~~~~~  175 (487)
                      |+..|++.+..+
T Consensus       245 Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  245 LLNSGADVTQED  256 (296)
T ss_pred             HHhcCCCccccc
Confidence            555555554433

>PHA02741 hypothetical protein; Provisional

Probab=99.89  E-value=5.6e-23  Score=183.45  Aligned_cols=128  Identities=23%  Similarity=0.291  Sum_probs=89.7

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCChHHHHHHhCCCc----HHHHHHHHHcCCCccccCCC
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCR------DGAGLEWIDKEGKTPLIAACMNPGL----YDVAKTLIELGAKVDAYRPG   73 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~------~g~~~~~~d~~G~TpL~~A~~~~g~----~~~v~~Ll~~ga~~~~~~~d   73 (487)
                      |+.|+|+||+|++.|+.++|+.|+.      .|++++.+|..|.||||+|+.. |+    .+++++|+.+|++++.+  +
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~-g~~~~~~~ii~~Ll~~gadin~~--~   94 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEK-HEAQLAAEIIDHLIELGADINAQ--E   94 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCC--C
Confidence            4567777777777777777776643      2466777777777777777777 66    46677777777777765  5


Q ss_pred             C-CCCcHHHHHHHhCCHHHHHHHHH-cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660           74 R-HGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI  134 (487)
Q Consensus        74 ~-~g~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  134 (487)
                      . .|+||||+|+..++.+++++|+. .|++++.+|.+|+||||+|+..++.+++++|+++++.
T Consensus        95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3 67777777777777777777776 4677777777777777777777777777777766544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.2e-22  Score=209.21  Aligned_cols=193  Identities=15%  Similarity=0.061  Sum_probs=159.7

Q ss_pred             CCCchHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC--cHHHHHHHHHcCCCc--cccCCCCCC
Q 040660            4 QQSKEELLYQQVNYG---NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG--LYDVAKTLIELGAKV--DAYRPGRHG   76 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g--~~~~v~~Ll~~ga~~--~~~~~d~~g   76 (487)
                      |++|+||||+|+..|   +.++|++||++|++++.+|..|+||||+|+.. +  +.|++++|++.|++.  +..  |..+
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~-~~~~~eIv~~Ll~~~~~~~~~~~--~~~~  114 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKR-KYVKSQIVHLLISSYSNASNELT--SNIN  114 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHc-CCCcHHHHHHHHhcCCCCCcccc--cccC
Confidence            578999999999997   59999999999999999999999999999997 5  799999999997654  655  7779


Q ss_pred             CcHHHHHHH--hCCHHHHHHHHH-cCCCcccccC-----CCCCHHHHHHHcCCHHHHHHHHhCCCccccc-----ccccC
Q 040660           77 GTPLHHAAK--RGLERTVKLLLS-YGANALVLND-----DCQTPLEVARAKGFTNVVRAIENHICIFSGW-----LRELY  143 (487)
Q Consensus        77 ~TpLh~Aa~--~g~~~~v~~Ll~-~ga~~~~~d~-----~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~-----~~d~~  143 (487)
                      .+|||.++.  .++.++|++|+. .++|++...+     .|.+|+++|+..++.++|++|+++|+++++.     ..+..
T Consensus       115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~  194 (672)
T PHA02730        115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD  194 (672)
T ss_pred             CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence            999999998  899999999997 6688876643     7899999999999999999999999999643     23433


Q ss_pred             CC-CHHHHH--h---hhcCCHHHHHHhhcCCCCCCCCCCccchhccc--cccccchHHHHHHHh
Q 040660          144 GP-GFLELL--A---PQLLSRKVWVAVLPTGSRNPTKPFKLELAIYP--SLLDARPRMVIALWK  199 (487)
Q Consensus       144 G~-t~L~~~--a---~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~  199 (487)
                      +- |.||+.  .   ...+..|++++|+++|++++.++..+..+++.  ........++..|..
T Consensus       195 ~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        195 RCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             ccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence            43 455511  1   46678999999999999999999999988864  222333666666655

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.4e-22  Score=191.35  Aligned_cols=154  Identities=23%  Similarity=0.227  Sum_probs=133.4

Q ss_pred             CCCch-HHHHHHHHcCCHHHHHHHHHcCCCCCccC----CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660            4 QQSKE-ELLYQQVNYGNVEGIKALCRDGAGLEWID----KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT   78 (487)
Q Consensus         4 d~~g~-t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d----~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   78 (487)
                      |+.|. ++||.|+..|+.+++++|+++|++++.++    ..|.||||+|+.. ++.+++++|+++|+++|.++ +..|.|
T Consensus        29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~-~~~eivklLL~~GADVN~~~-~~~g~T  106 (300)
T PHA02884         29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDC-DNDDAAKLLIRYGADVNRYA-EEAKIT  106 (300)
T ss_pred             CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcCccc-CCCCCC
Confidence            44444 67777788899999999999999999874    5899999999999 99999999999999999862 457999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCH
Q 040660           79 PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSR  158 (487)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~  158 (487)
                      |||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++.++...       ..+..+.+|++ +.   .+.
T Consensus       107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~---~n~  175 (300)
T PHA02884        107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN-------EISNFYKHPKK-IL---INF  175 (300)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC-------cccccccChhh-hh---ccH
Confidence            99999999999999999999999999999999999999999999988777532       23456778888 33   368


Q ss_pred             HHHHHhhcCCCC
Q 040660          159 KVWVAVLPTGSR  170 (487)
Q Consensus       159 ~~~~~Ll~~g~~  170 (487)
                      +++++|++++.-
T Consensus       176 ei~~~Lish~vl  187 (300)
T PHA02884        176 DILKILVSHFIL  187 (300)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988873

>PHA02795 ankyrin-like protein; Provisional

Probab=99.88  E-value=4.8e-22  Score=197.67  Aligned_cols=169  Identities=10%  Similarity=-0.092  Sum_probs=154.1

Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC------ccCCCCChHHHHHHh--CCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660           13 QQVNYGNVEGIKALCRDGAGLE------WIDKEGKTPLIAACM--NPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus        13 ~Aa~~g~~~~v~~Ll~~g~~~~------~~d~~G~TpL~~A~~--~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      +|+..+..|++++|+.+|++++      .++..++|+||+++.  . |+.++|++|+.+||+++..    ++.||||+|+
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~-n~~eiV~~LI~~GADIn~~----~~~t~lh~A~  157 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY-VEIDIVDFMVDHGAVIYKI----ECLNAYFRGI  157 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC-CCHHHHHHHHHCCCCCCCC----CCCCHHHHHH
Confidence            8999999999999999999998      788899999999999  7 9999999999999999974    4589999999


Q ss_pred             HhCCHHHHHHHHHcCCCcc-cc-----cCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCH
Q 040660           85 KRGLERTVKLLLSYGANAL-VL-----NDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSR  158 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~~~-~~-----d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~  158 (487)
                      ..|+.+++++|+++|++.. ..     +..+.|++|.|...++.+++++|+++|++++  .+|..|.|||| +|+..++.
T Consensus       158 ~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN--~kD~~G~TpLh-~Aa~~g~~  234 (437)
T PHA02795        158 CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN--QLDAGGRTLLY-RAIYAGYI  234 (437)
T ss_pred             HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--cCCCCCCCHHH-HHHHcCCH
Confidence            9999999999999998543 22     2358899999999999999999999999999  99999999999 89999999


Q ss_pred             HHHHHhhcCCCCCCCCCCccchhcccccccc
Q 040660          159 KVWVAVLPTGSRNPTKPFKLELAIYPSLLDA  189 (487)
Q Consensus       159 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      +++++|+++|++.+.++..+..+++.+...+
T Consensus       235 eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        235 DLVSWLLENGANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            9999999999999999988888888777644

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=2.7e-22  Score=178.23  Aligned_cols=142  Identities=16%  Similarity=0.168  Sum_probs=128.9

Q ss_pred             cCCCCCccCCCCChHHHHHHhCCCcH----HHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHH---HHHHHHcCCC
Q 040660           29 DGAGLEWIDKEGKTPLIAACMNPGLY----DVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERT---VKLLLSYGAN  101 (487)
Q Consensus        29 ~g~~~~~~d~~G~TpL~~A~~~~g~~----~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~---v~~Ll~~ga~  101 (487)
                      +|++++..+.++.++||+||.. |+.    +++++|++.|++++.+  |..|+||||+|+..|+.+.   +++|++.|++
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~-g~~~~l~~~~~~l~~~g~~~~~~--d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad   85 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRT-GNIYELMEVAPFISGDGHLLHRY--DHHGRQCTHMVAWYDRANAVMKIELLVNMGAD   85 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHc-CCHHHHHHHHHHHhhcchhhhcc--CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC
Confidence            4677888889999999999999 887    6677888999999987  8999999999999998654   8999999999


Q ss_pred             ccccc-CCCCCHHHHHHHcCCHHHHHHHHh-CCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCC
Q 040660          102 ALVLN-DDCQTPLEVARAKGFTNVVRAIEN-HICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPF  176 (487)
Q Consensus       102 ~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~  176 (487)
                      ++.+| ..|+||||+|+..|+.+++++|+. .|++++  .+|..|.|||| +|...++.+++++|+.+|++.+..+.
T Consensus        86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~tpL~-~A~~~~~~~iv~~Ll~~ga~~~~~~~  159 (166)
T PHA02743         86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG--AINYQHETAYH-IAYKMRDRRMMEILRANGAVCDDPLS  159 (166)
T ss_pred             CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCccc
Confidence            99998 589999999999999999999995 899999  89999999999 89999999999999999999877663

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.88  E-value=3.4e-22  Score=220.26  Aligned_cols=142  Identities=21%  Similarity=0.146  Sum_probs=134.2

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|++|+||||+|+..|+.+++++|+++|+++|.+|.+|.||||+|+.. |+.+++++|++.++..+    ...|.++||+
T Consensus       554 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~-g~~~iv~~L~~~~~~~~----~~~~~~~L~~  628 (823)
T PLN03192        554 GDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA-KHHKIFRILYHFASISD----PHAAGDLLCT  628 (823)
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh-CCHHHHHHHHhcCcccC----cccCchHHHH
Confidence            478899999999999999999999999999999999999999999999 99999999999887665    4568899999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCC-CCHHHHHh
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYG-PGFLELLA  152 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G-~t~L~~~a  152 (487)
                      |+..|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|+++|++++  ..|..| .||++ ++
T Consensus       629 Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~--~~~~~g~~t~~~-l~  696 (823)
T PLN03192        629 AAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD--KANTDDDFSPTE-LR  696 (823)
T ss_pred             HHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CCCCCCCCCHHH-HH
Confidence            999999999999999999999999999999999999999999999999999999  888888 89998 44

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.88  E-value=1.3e-22  Score=218.61  Aligned_cols=161  Identities=29%  Similarity=0.260  Sum_probs=122.7

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      +.|.|+||+|+..|+.+++..|++.++..+.....|.|+||.|... +...+++.++++|++++.+  +..|+||||+|+
T Consensus       472 ~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~-~~v~~~~~l~~~ga~v~~~--~~r~~TpLh~A~  548 (1143)
T KOG4177|consen  472 KQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE-DTVKVAKILLEHGANVDLR--TGRGYTPLHVAV  548 (1143)
T ss_pred             cccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhh-hhHHHHHHHhhcCCceehh--cccccchHHHHH
Confidence            3455555665555665555555555555555555555666666555 5666666666667777776  788888888888


Q ss_pred             HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660           85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV  164 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L  164 (487)
                      .+|+.++|++||++|+|++++++.|+||||.|+..|+.+|+++|+++|+++|  ..|.+|.|||+ .|...++.++++.|
T Consensus       549 ~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn--a~d~~g~TpL~-iA~~lg~~~~~k~l  625 (1143)
T KOG4177|consen  549 HYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN--AADLDGFTPLH-IAVRLGYLSVVKLL  625 (1143)
T ss_pred             hcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC--cccccCcchhH-HHHHhcccchhhHH
Confidence            8888888888888888888888888888888888888888888888888888  88888888888 88888888888888


Q ss_pred             hcCCCCC
Q 040660          165 LPTGSRN  171 (487)
Q Consensus       165 l~~g~~~  171 (487)
                      +..+...
T Consensus       626 ~~~~~~~  632 (1143)
T KOG4177|consen  626 KVVTATP  632 (1143)
T ss_pred             HhccCcc
Confidence            8888773

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.88  E-value=6.8e-23  Score=178.50  Aligned_cols=156  Identities=24%  Similarity=0.227  Sum_probs=142.8

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      --+++++++++...+++.+..|.+.  .+|..|..|+|||+||+.+ |++++|++||+.|+++++.  .+...++|++|+
T Consensus       127 ~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~-G~i~vV~fLL~~GAdp~~l--gk~resALsLAt  201 (296)
T KOG0502|consen  127 LMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK-GHIPVVQFLLNSGADPDAL--GKYRESALSLAT  201 (296)
T ss_pred             cccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc-CchHHHHHHHHcCCChhhh--hhhhhhhHhHHh
Confidence            3467999999999998888777654  6888999999999999999 9999999999999999998  899999999999


Q ss_pred             HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660           85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV  164 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L  164 (487)
                      ..|..++|++||.++.|+|..|-+|-|||-||++-+|.+||+.|++.|++++  ..+..|++++. .|...++. +++.+
T Consensus       202 ~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~~md-lAValGyr-~Vqqv  277 (296)
T KOG0502|consen  202 RGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYWIMD-LAVALGYR-IVQQV  277 (296)
T ss_pred             cCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCcHHH-HHHHhhhH-HHHHH
Confidence            9999999999999999999999999999999999999999999999999999  99999999999 88888877 66666


Q ss_pred             hcCCC
Q 040660          165 LPTGS  169 (487)
Q Consensus       165 l~~g~  169 (487)
                      ++.-+
T Consensus       278 ie~h~  282 (296)
T KOG0502|consen  278 IEKHA  282 (296)
T ss_pred             HHHHH
Confidence            64433

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.87  E-value=2.9e-22  Score=176.24  Aligned_cols=129  Identities=22%  Similarity=0.196  Sum_probs=104.7

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCC--C-----CCccCCCCChHHHHHHhCCCcH---HHHHHHHHcCCCccccCC
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGA--G-----LEWIDKEGKTPLIAACMNPGLY---DVAKTLIELGAKVDAYRP   72 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~--~-----~~~~d~~G~TpL~~A~~~~g~~---~~v~~Ll~~ga~~~~~~~   72 (487)
                      .|.+|.||||+|++.|+.  +.+++..+.  +     ++.+|..|.||||+|+.. |+.   +++++|++.|++++.+  
T Consensus        13 ~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~-~~~~~~e~v~~Ll~~gadin~~--   87 (154)
T PHA02736         13 PDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNP-DKADPQEKLKLLMEWGADINGK--   87 (154)
T ss_pred             cCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeeccc-CchhHHHHHHHHHHcCCCcccc--
Confidence            467899999999999984  233322221  1     335688899999999988 776   4688899999999987  


Q ss_pred             C-CCCCcHHHHHHHhCCHHHHHHHHH-cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660           73 G-RHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS  136 (487)
Q Consensus        73 d-~~g~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  136 (487)
                      | ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..|+.+++++|+++|++.+
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6 489999999999999999999997 489999999999999999999999999999999988754

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=3.2e-22  Score=215.64  Aligned_cols=180  Identities=24%  Similarity=0.221  Sum_probs=153.7

Q ss_pred             CCCchHHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            4 QQSKEELLYQQVNYG-NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      ++.|.|+||+|+..| ..++...+++.|+++|..-..|.||||+|+.. |+.++++.|++.++..+..  .+.|.|+||.
T Consensus       437 ~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~-Gh~~~~~llle~~~~~~~~--~~~~l~~lhl  513 (1143)
T KOG4177|consen  437 AKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQE-GHTEVVQLLLEGGANDNLD--AKKGLTPLHL  513 (1143)
T ss_pred             hhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhcc-CCchHHHHhhhcCCccCcc--chhccchhhh
Confidence            456778888888877 77777777777888887777888888888888 8888888888877666665  6678888888


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |...+...+++.++++|++++.++..|+||||.|+.+|+.++|++|+++|++++  .+++.|+|||| .|+..++.+|+.
T Consensus       514 a~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~--ak~~~G~TPLH-~Aa~~G~~~i~~  590 (1143)
T KOG4177|consen  514 AADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN--AKDKLGYTPLH-QAAQQGHNDIAE  590 (1143)
T ss_pred             hhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc--ccCCCCCChhh-HHHHcChHHHHH
Confidence            888888888888888899999999999999999999999999999999999999  99999999999 888899999999


Q ss_pred             HhhcCCCCCCCCCCccchhcccccccc
Q 040660          163 AVLPTGSRNPTKPFKLELAIYPSLLDA  189 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      +|+++|++++..+..+...+..+...+
T Consensus       591 LLlk~GA~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  591 LLLKHGASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             HHHHcCCCCCcccccCcchhHHHHHhc
Confidence            999999999999987777776666533

>PHA02917 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.4e-21  Score=207.99  Aligned_cols=161  Identities=16%  Similarity=0.025  Sum_probs=135.1

Q ss_pred             CCCCchHHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660            3 LQQSKEELLYQQVNYGNVE----GIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT   78 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   78 (487)
                      .+.+|.||||+|+..|+.+    +++.|++.+...+..+.  .+++|+|+.. ++.++|++|+++|+++|.+  |.+|+|
T Consensus        64 ~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~~a~~~-~~~e~vk~Ll~~Gadin~~--d~~g~T  138 (661)
T PHA02917         64 KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIFSYMKSKN-VDVDLIKVLVEHGFDLSVK--CENHRS  138 (661)
T ss_pred             cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chHHHHHhhc-CCHHHHHHHHHcCCCCCcc--CCCCcc
Confidence            3678999999999999854    56788887554555442  3777888888 9999999999999999998  999999


Q ss_pred             HHHHHH--HhCCHHHHHHHHHcCCCcccccC---CC-----------CCHHHHHHH-----------cCCHHHHHHHHhC
Q 040660           79 PLHHAA--KRGLERTVKLLLSYGANALVLND---DC-----------QTPLEVARA-----------KGFTNVVRAIENH  131 (487)
Q Consensus        79 pLh~Aa--~~g~~~~v~~Ll~~ga~~~~~d~---~g-----------~TpL~~A~~-----------~g~~~~v~~Ll~~  131 (487)
                      |||+|+  ..|+.++|++|+++|++++.+|.   .|           .||||+|+.           .++.++|++|+++
T Consensus       139 ~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~  218 (661)
T PHA02917        139 VIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH  218 (661)
T ss_pred             HHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC
Confidence            999654  57899999999999999987654   34           599999986           5689999999999


Q ss_pred             CCcccccccccCCCCHHHHHhhhcCCH--HHHHHhhcCCCCCC
Q 040660          132 ICIFSGWLRELYGPGFLELLAPQLLSR--KVWVAVLPTGSRNP  172 (487)
Q Consensus       132 ga~~~~~~~d~~G~t~L~~~a~~~~~~--~~~~~Ll~~g~~~~  172 (487)
                      |++++  .+|.+|.|||| +|...++.  +++++|+. |++..
T Consensus       219 Gadvn--~~d~~G~TpLh-~A~~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        219 GIKPS--SIDKNYCTALQ-YYIKSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             CCCcc--cCCCCCCcHHH-HHHHcCCCcHHHHHHHHh-CCccc
Confidence            99999  99999999999 77777764  79999975 77553

>PHA02741 hypothetical protein; Provisional

Probab=99.87  E-value=1.4e-21  Score=174.41  Aligned_cols=133  Identities=15%  Similarity=0.109  Sum_probs=120.9

Q ss_pred             CCccCCCCChHHHHHHhCCCcHHHHHHHHH------cCCCccccCCCCCCCcHHHHHHHhCC----HHHHHHHHHcCCCc
Q 040660           33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIE------LGAKVDAYRPGRHGGTPLHHAAKRGL----ERTVKLLLSYGANA  102 (487)
Q Consensus        33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~------~ga~~~~~~~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~ga~~  102 (487)
                      ++.+|..|.|+||+|+.. |+.+++++|+.      .|++++.+  |..|.||||+|+..|+    .+++++|++.|+++
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~-g~~~~v~~l~~~~~~~~~ga~in~~--d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi   90 (169)
T PHA02741         14 IAEKNSEGENFFHEAARC-GCFDIIARFTPFIRGDCHAAALNAT--DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI   90 (169)
T ss_pred             hhccccCCCCHHHHHHHc-CCHHHHHHHHHHhccchhhhhhhcc--CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence            345788999999999999 99999999864      36888887  8999999999999999    58999999999999


Q ss_pred             ccccC-CCCCHHHHHHHcCCHHHHHHHHh-CCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660          103 LVLND-DCQTPLEVARAKGFTNVVRAIEN-HICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN  171 (487)
Q Consensus       103 ~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~  171 (487)
                      +.+|. +|+||||+|+..++.+++++|+. .|++++  ..|..|.|||| .|...++.+++++|+..++..
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~tpL~-~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH--FCNADNKSPFE-LAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCCHHH-HHHHCCCHHHHHHHHHHHHHh
Confidence            99985 99999999999999999999997 599998  99999999999 899999999999999876553

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.86  E-value=4.1e-21  Score=161.49  Aligned_cols=143  Identities=23%  Similarity=0.260  Sum_probs=126.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660            8 EELLYQQVNYGNVEGIKALCRDGAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR   86 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~   86 (487)
                      ...+.+|+..+....|+.||+..++ +|.+|.+|+||||-|+.+ |+.+||+.|+..|++++.+  ...|+||||-||+.
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn-~h~div~~ll~~gAn~~a~--T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYN-GHLDIVHELLLSGANKEAK--TNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhc-CchHHHHHHHHccCCcccc--cccCccchhhhhcc
Confidence            3567899999999999999999776 899999999999999999 9999999999999999998  99999999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCH-HHHHHHH-hCCCcccccccccCCCCHHHHHhhhcC
Q 040660           87 GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT-NVVRAIE-NHICIFSGWLRELYGPGFLELLAPQLL  156 (487)
Q Consensus        87 g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~-~~v~~Ll-~~ga~~~~~~~d~~G~t~L~~~a~~~~  156 (487)
                      ++.+++.+||.+|+|||+..+..+||||+|+...+. ..+++|+ ..+....  .++..+.||++ +|.+.+
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg--~~nn~eeta~~-iARRT~  209 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG--LKNNLEETAFD-IARRTS  209 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh--hhcCccchHHH-HHHHhh
Confidence            999999999999999999999999999999987665 4555554 4445554  78889999999 776554

>PHA02730 ankyrin-like protein; Provisional

Probab=99.86  E-value=9.4e-21  Score=197.11  Aligned_cols=156  Identities=13%  Similarity=0.133  Sum_probs=135.7

Q ss_pred             HHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc----HHHHHHHHHcCC--CccccCCCCCCCcHH
Q 040660           10 LLYQQVNYG---NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL----YDVAKTLIELGA--KVDAYRPGRHGGTPL   80 (487)
Q Consensus        10 ~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~----~~~v~~Ll~~ga--~~~~~~~d~~g~TpL   80 (487)
                      .||.-...+   +.+++++||++|+++|.. ..|.||||+|+.. ++    .+++++||++|+  +++.+  |..|.|||
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~-nnn~i~~eIvelLIs~Ga~~dIN~k--d~~G~T~L  421 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVN-NNNIVDVNVVRFIVENNGHMAINHV--SNNGRLCM  421 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHH-cCCcchHHHHHHHHHcCCCcccccc--ccCCCchH
Confidence            666667756   589999999999999985 7999999999988 54    899999999998  58877  88999999


Q ss_pred             HH---HHHhC---------CHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccccc-CCCCH
Q 040660           81 HH---AAKRG---------LERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLREL-YGPGF  147 (487)
Q Consensus        81 h~---Aa~~g---------~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~G~t~  147 (487)
                      |.   |...+         ..+++++|+.+|+|++.+|..|+||||+|+..++.+++++|+++|++++  .+|. .|.||
T Consensus       422 h~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN--~~d~~~g~Ta  499 (672)
T PHA02730        422 YGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVN--TTSRSIINTA  499 (672)
T ss_pred             hHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCcCCcCH
Confidence            94   33232         2357999999999999999999999999999999999999999999999  8886 59999


Q ss_pred             HHHHhhh--cCCHHHHHHhhcCCCCCC
Q 040660          148 LELLAPQ--LLSRKVWVAVLPTGSRNP  172 (487)
Q Consensus       148 L~~~a~~--~~~~~~~~~Ll~~g~~~~  172 (487)
                      || .|+.  .++.+++++|+++|++..
T Consensus       500 L~-~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        500 IQ-KSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             HH-HHHHhhcCcHHHHHHHHHcCCCHH
Confidence            99 5554  478999999999999864

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=3.8e-21  Score=179.37  Aligned_cols=174  Identities=20%  Similarity=0.216  Sum_probs=147.8

Q ss_pred             CCHHHHHHHHHc----CC-----CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC-CCccccCCCCCCCcHHHHHHHh-
Q 040660           18 GNVEGIKALCRD----GA-----GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG-AKVDAYRPGRHGGTPLHHAAKR-   86 (487)
Q Consensus        18 g~~~~v~~Ll~~----g~-----~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~TpLh~Aa~~-   86 (487)
                      -+.+.|+..|..    ++     -+|+-|.+|+|+|||++.+ +++++|+.||..| +++|..  ++-|+||+|+|+.. 
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSH-aNF~VV~~LLDSgvC~VD~q--NrAGYtpiMLaALA~  313 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSH-ANFDVVSILLDSGVCDVDQQ--NRAGYTPVMLAALAK  313 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecc-cchHHHHHHhccCccccccc--ccccccHHHHHHHHh
Confidence            456777655432    22     2788999999999999999 9999999999998 899998  99999999999864 


Q ss_pred             ----CCHHHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660           87 ----GLERTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW  161 (487)
Q Consensus        87 ----g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~  161 (487)
                          .+.++|..|...| |||++- ..|+|+||+|+.+|+.++|+.||..|+++|  .+|.+|.|+|+ .|+..+++||+
T Consensus       314 lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN--iQDdDGSTALM-CA~EHGhkEiv  389 (452)
T KOG0514|consen  314 LKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVN--IQDDDGSTALM-CAAEHGHKEIV  389 (452)
T ss_pred             hcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc--cccCCccHHHh-hhhhhChHHHH
Confidence                3567899988776 777765 579999999999999999999999999999  99999999999 99999999999


Q ss_pred             HHhhcC-CCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          162 VAVLPT-GSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       162 ~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                      ++|+.. +.+....+..+..++..++..+....-..|+
T Consensus       390 klLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlY  427 (452)
T KOG0514|consen  390 KLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLY  427 (452)
T ss_pred             HHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHH
Confidence            998865 6677778888888888888866666555444

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=3.4e-21  Score=188.74  Aligned_cols=171  Identities=26%  Similarity=0.311  Sum_probs=130.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCH
Q 040660           10 LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLE   89 (487)
Q Consensus        10 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~   89 (487)
                      .+..|+..|+++-|+.||..|++++..+.+|.|+||-+|.. .+.+||++|+++|++||..  |..|+||||.|+..|+.
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id-~~~e~v~~l~e~ga~Vn~~--d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACID-DNLEMVKFLVENGANVNAQ--DNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhc-ccHHHHHHHHHhcCCcccc--ccccCCcchhhcccccH
Confidence            35566677777777777777777777777777777777777 7777777777777777776  77777777777777777


Q ss_pred             HHHHHHHHcCCC-----------------------------------------------------------cccccCCCC
Q 040660           90 RTVKLLLSYGAN-----------------------------------------------------------ALVLNDDCQ  110 (487)
Q Consensus        90 ~~v~~Ll~~ga~-----------------------------------------------------------~~~~d~~g~  110 (487)
                      .++++|+.+|++                                                           .++.+..|.
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~  199 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGA  199 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccc
Confidence            777777776443                                                           223344467


Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660          111 TPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL  186 (487)
Q Consensus       111 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  186 (487)
                      |.||.|+.+|..++.++|+++|.+++  .+|.+|+|||| +|+..+..+..++|+.+|++.+.....++..+-...
T Consensus       200 T~lHvAaa~Gy~e~~~lLl~ag~~~~--~~D~dgWtPlH-AAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  200 TALHVAAANGYTEVAALLLQAGYSVN--IKDYDGWTPLH-AAAHWGQEDACELLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhccCcc--cccccCCCccc-HHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence            88888888888888888888888888  88888888888 888888888888888888888777655555544433

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.84  E-value=6.3e-21  Score=192.96  Aligned_cols=169  Identities=26%  Similarity=0.200  Sum_probs=155.3

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      |.+|.|+||.|+.+|+.+++++|+++.+-++..|..|.+|||+|++. |+.+++++|+.++..+|+.  ...|.||||.|
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~-g~~e~vkmll~q~d~~na~--~~e~~tplhla  122 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWN-GNLEIVKMLLLQTDILNAV--NIENETPLHLA  122 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhc-CcchHHHHHHhcccCCCcc--cccCcCccchh
Confidence            66899999999999999999999999999999999999999999999 9999999999999999998  89999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc------ccccccCCCCHHHHHhhhcCC
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS------GWLRELYGPGFLELLAPQLLS  157 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~------~~~~d~~G~t~L~~~a~~~~~  157 (487)
                      ++.||.++|.+|+.+|+|+..+|+.+.|+|.+|++.|..++|++|+.....+.      ...++..+.++|| +|+.+++
T Consensus       123 aqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH-laakngh  201 (854)
T KOG0507|consen  123 AQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH-LAAKNGH  201 (854)
T ss_pred             hhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc-hhhhcch
Confidence            99999999999999999999999999999999999999999999997722111      1255677899999 9999999


Q ss_pred             HHHHHHhhcCCCCCCCCCC
Q 040660          158 RKVWVAVLPTGSRNPTKPF  176 (487)
Q Consensus       158 ~~~~~~Ll~~g~~~~~~~~  176 (487)
                      .++++.|+..|.+++....
T Consensus       202 ~~~~~~ll~ag~din~~t~  220 (854)
T KOG0507|consen  202 VECMQALLEAGFDINYTTE  220 (854)
T ss_pred             HHHHHHHHhcCCCcccccc
Confidence            9999999999999987764

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.84  E-value=9.9e-21  Score=185.52  Aligned_cols=145  Identities=29%  Similarity=0.317  Sum_probs=136.7

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----------
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-----------   71 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-----------   71 (487)
                      ...+|.|+||.++...+.++|++|+++|++||..|..|+||||.|+.- |+..++++||.+|+++...+           
T Consensus        69 ~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc-g~~~i~~~li~~gA~~~avNsdg~~P~dl~e  147 (527)
T KOG0505|consen   69 CNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC-GYLNIVEYLIQHGANLLAVNSDGNMPYDLAE  147 (527)
T ss_pred             cCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc-ccHHHHHHHHHhhhhhhhccCCCCCcccccc
Confidence            356899999999999999999999999999999999999999999999 99999999999998866552           


Q ss_pred             ----------------------------------------------CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccc
Q 040660           72 ----------------------------------------------PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVL  105 (487)
Q Consensus        72 ----------------------------------------------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~  105 (487)
                                                                    ++..|.|.||.|+..|..++.++|+++|.+++++
T Consensus       148 ~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~  227 (527)
T KOG0505|consen  148 DEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIK  227 (527)
T ss_pred             CcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccc
Confidence                                                          3555999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHH
Q 040660          106 NDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLEL  150 (487)
Q Consensus       106 d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~  150 (487)
                      |.+||||||.|+.+|+.+++++|+++|++++  .....|.|||.+
T Consensus       228 D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d--~~t~~g~~p~dv  270 (527)
T KOG0505|consen  228 DYDGWTPLHAAAHWGQEDACELLVEHGADMD--AKTKMGETPLDV  270 (527)
T ss_pred             cccCCCcccHHHHhhhHhHHHHHHHhhcccc--hhhhcCCCCccc
Confidence            9999999999999999999999999999999  999999999994

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=8.9e-21  Score=166.71  Aligned_cols=132  Identities=22%  Similarity=0.154  Sum_probs=112.9

Q ss_pred             CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC--C-----ccccCCCCCCCcHHHHHHHhCCH---HHHHHHHHcCCCc
Q 040660           33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA--K-----VDAYRPGRHGGTPLHHAAKRGLE---RTVKLLLSYGANA  102 (487)
Q Consensus        33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga--~-----~~~~~~d~~g~TpLh~Aa~~g~~---~~v~~Ll~~ga~~  102 (487)
                      .+.+|..|.||||+|+.. |+  ++.+|+..+.  +     ++.+  |..|.||||+|+..|+.   +++++|++.|+++
T Consensus        10 ~~~~d~~g~tpLh~A~~~-g~--~~~l~~~~~~~~~~~~~~~~~~--d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi   84 (154)
T PHA02736         10 ASEPDIEGENILHYLCRN-GG--VTDLLAFKNAISDENRYLVLEY--NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI   84 (154)
T ss_pred             HHhcCCCCCCHHHHHHHh-CC--HHHHHHHHHHhcchhHHHHHHh--cCCCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence            456788999999999999 87  3444443332  2     2233  88999999999999987   4689999999999


Q ss_pred             cccc-CCCCCHHHHHHHcCCHHHHHHHHh-CCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCC
Q 040660          103 LVLN-DDCQTPLEVARAKGFTNVVRAIEN-HICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNP  172 (487)
Q Consensus       103 ~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~  172 (487)
                      +.+| ..|+||||+|+..|+.+++++|+. .|++++  .+|..|.|||| +|...++.+++++|+..|++.+
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n--~~~~~g~tpL~-~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME--ILNYAFKTPYY-VACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc--cccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC
Confidence            9998 599999999999999999999998 499998  99999999999 8889999999999999998753

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.83  E-value=4.9e-21  Score=173.31  Aligned_cols=155  Identities=25%  Similarity=0.285  Sum_probs=134.5

Q ss_pred             HHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHH
Q 040660           15 VNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVK   93 (487)
Q Consensus        15 a~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~   93 (487)
                      |+.|+.--|++-|+. ..|+|.-|..|++||||||+. |+..+++.||..|+.+|..  +.-..||||+|+..||.++|+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaake-gh~aivemll~rgarvn~t--nmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKE-GHVAIVEMLLSRGARVNST--NMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhc-ccHHHHHHHHhcccccccc--cCCCCcchhhhhhcccHHHHH
Confidence            677777667766654 778999999999999999999 9999999999999999997  777889999999999999999


Q ss_pred             HHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCC
Q 040660           94 LLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPT  173 (487)
Q Consensus        94 ~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~  173 (487)
                      .||+..+|+|+.|..|+||||||+..|...+.+-|+..|+.++  ..+++|.|||. -|.-.-...+.++.-.+|...+.
T Consensus        85 kll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~--icnk~g~tpld-kakp~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen   85 KLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN--ICNKKGMTPLD-KAKPMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee--ecccCCCCchh-hhchHHHHHHHHHHHHhCCCCCc
Confidence            9999999999999999999999999999999999999999999  99999999999 55443344445555566776654


Q ss_pred             CC
Q 040660          174 KP  175 (487)
Q Consensus       174 ~~  175 (487)
                      .+
T Consensus       162 ip  163 (448)
T KOG0195|consen  162 IP  163 (448)
T ss_pred             cc
Confidence            44

>PHA02792 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.4e-19  Score=186.53  Aligned_cols=179  Identities=12%  Similarity=0.064  Sum_probs=149.8

Q ss_pred             CCCchHHHHHHHHcC-------CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC--cHHHHHHHHHcCC---------
Q 040660            4 QQSKEELLYQQVNYG-------NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG--LYDVAKTLIELGA---------   65 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g-------~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g--~~~~v~~Ll~~ga---------   65 (487)
                      |+.|.||||+|+..+       +.++++.||++|++++.+|..|.||||+|+.+ .  ..|++++|+..--         
T Consensus       172 ~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~-~~i~~ei~~~L~~~~~~~~~~~~~l  250 (631)
T PHA02792        172 DRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDK-CDIKREIFDALFDSNYSGNELMNIL  250 (631)
T ss_pred             CCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHc-ccchHHHHHHHHhccccccchHhHH
Confidence            566999999999999       89999999999999999999999999999998 6  5677777764210         


Q ss_pred             -------------Ccccc--C-----------------------------------------------------------
Q 040660           66 -------------KVDAY--R-----------------------------------------------------------   71 (487)
Q Consensus        66 -------------~~~~~--~-----------------------------------------------------------   71 (487)
                                   ++|..  +                                                           
T Consensus       251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~  330 (631)
T PHA02792        251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE  330 (631)
T ss_pred             HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence                         01100  0                                                           


Q ss_pred             -C---CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCC--CCHHHHHHHcCCH---HHHHHHHhCCCccccccccc
Q 040660           72 -P---GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDC--QTPLEVARAKGFT---NVVRAIENHICIFSGWLREL  142 (487)
Q Consensus        72 -~---d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g--~TpL~~A~~~g~~---~~v~~Ll~~ga~~~~~~~d~  142 (487)
                       .   ...+...+|.||..|+.++|++|+++|||++.+|.+|  .||||+|......   +++++|+++|++++  .+|.
T Consensus       331 Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN--~kD~  408 (631)
T PHA02792        331 GATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDIN--KIDK  408 (631)
T ss_pred             CCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccc--cccc
Confidence             0   1235677999999999999999999999999999875  6999998776654   46899999999999  9999


Q ss_pred             CCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660          143 YGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL  186 (487)
Q Consensus       143 ~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  186 (487)
                      .|.|||| .|+..++.+++++|+++|++.+.++..+..++..+.
T Consensus       409 ~G~TPLh-~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~  451 (631)
T PHA02792        409 HGRSILY-YCIESHSVSLVEWLIDNGADINITTKYGSTCIGICV  451 (631)
T ss_pred             cCcchHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            9999999 888999999999999999999988877777666554

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.2e-19  Score=173.81  Aligned_cols=132  Identities=17%  Similarity=0.164  Sum_probs=114.5

Q ss_pred             CCccCCCCChHH-HHHHhCCCcHHHHHHHHHcCCCccccCC--CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccc-cCC
Q 040660           33 LEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDAYRP--GRHGGTPLHHAAKRGLERTVKLLLSYGANALVL-NDD  108 (487)
Q Consensus        33 ~~~~d~~G~TpL-~~A~~~~g~~~~v~~Ll~~ga~~~~~~~--d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~-d~~  108 (487)
                      +..+|..|+|++ |.|+.. |+.+++++|+++|++++.++.  +..|.||||+|+..|+.+++++|+++|+|++.+ +..
T Consensus        25 ~~~~d~~~~~~lL~~A~~~-~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~  103 (300)
T PHA02884         25 IKKKNKICIANILYSSIKF-HYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEA  103 (300)
T ss_pred             hhccCcCCCCHHHHHHHHc-CCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCC
Confidence            445788888655 555555 999999999999999998632  468999999999999999999999999999986 468


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660          109 CQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG  168 (487)
Q Consensus       109 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g  168 (487)
                      |.||||+|+..++.+++++|+++|++++  .+|..|.|||| .|...++.+++.++...+
T Consensus       104 g~TpLh~Aa~~~~~eivklLL~~GAdin--~kd~~G~TpL~-~A~~~~~~~~~~~~~~~~  160 (300)
T PHA02884        104 KITPLYISVLHGCLKCLEILLSYGADIN--IQTNDMVTPIE-LALMICNNFLAFMICDNE  160 (300)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHhCChhHHHHhcCCc
Confidence            9999999999999999999999999999  99999999999 787778878776665433

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.81  E-value=1.6e-19  Score=197.90  Aligned_cols=141  Identities=23%  Similarity=0.276  Sum_probs=79.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCChHHH-HHHhCCCcHHHHHHHHHcCC-----------------
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRD--GAGLEWIDKEGKTPLI-AACMNPGLYDVAKTLIELGA-----------------   65 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~G~TpL~-~A~~~~g~~~~v~~Ll~~ga-----------------   65 (487)
                      .++..|+.|++.|+.+.|+.+++.  +.++|..|..|+|||| .|+.. ++.+++++|+++|+                 
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~-~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~   94 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIEN-ENLELTELLLNLSCRGAVGDTLLHAISLEYV   94 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhc-ChHHHHHHHHhCCCCCCcChHHHHHHHhccH
Confidence            345666666666666666666666  5666666666666666 44444 66666666666654                 


Q ss_pred             ---------------C------cccc--CCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc--------------CC
Q 040660           66 ---------------K------VDAY--RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN--------------DD  108 (487)
Q Consensus        66 ---------------~------~~~~--~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d--------------~~  108 (487)
                                     +      ++..  .....|.||||+|+..|+.++|++|+++|++++.++              ..
T Consensus        95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~  174 (743)
T TIGR00870        95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYH  174 (743)
T ss_pred             HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccc
Confidence                           0      0000  001235566666666666666666666555555432              13


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHH
Q 040660          109 CQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLE  149 (487)
Q Consensus       109 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~  149 (487)
                      |.||||+|+..|+.+++++|+++|++++  .+|..|+||||
T Consensus       175 g~tpL~~Aa~~~~~~iv~lLl~~gadin--~~d~~g~T~Lh  213 (743)
T TIGR00870       175 GESPLNAAACLGSPSIVALLSEDPADIL--TADSLGNTLLH  213 (743)
T ss_pred             cccHHHHHHHhCCHHHHHHHhcCCcchh--hHhhhhhHHHH
Confidence            5556666666666666666666665555  55555566665

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.80  E-value=1.1e-19  Score=184.03  Aligned_cols=174  Identities=21%  Similarity=0.108  Sum_probs=156.5

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      |..|.+|||+|++.|+.++|+.||.++..+|..+-+|.||||.|+++ ||.+++.+||.+|+|.-++  +..+.|+|-+|
T Consensus        79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh-gh~dvv~~Ll~~~adp~i~--nns~~t~ldlA  155 (854)
T KOG0507|consen   79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH-GHLEVVFYLLKKNADPFIR--NNSKETVLDLA  155 (854)
T ss_pred             hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh-cchHHHHHHHhcCCCcccc--CcccccHHHHH
Confidence            56789999999999999999999999988999999999999999999 9999999999999999998  99999999999


Q ss_pred             HHhCCHHHHHHHHHcCCC--------cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhc
Q 040660           84 AKRGLERTVKLLLSYGAN--------ALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL  155 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~--------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~  155 (487)
                      ++.|..++|+.|+.....        ...++-.+-+|||+|+++||.++++.|++.|.+++  ...+.| |+|| -|+..
T Consensus       156 ~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din--~~t~~g-talh-eaalc  231 (854)
T KOG0507|consen  156 SRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDIN--YTTEDG-TALH-EAALC  231 (854)
T ss_pred             HHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcc--cccccc-hhhh-hHhhc
Confidence            999999999999987322        22345577899999999999999999999999999  777777 9999 89999


Q ss_pred             CCHHHHHHhhcCCCCCCCCCCccchhccc
Q 040660          156 LSRKVWVAVLPTGSRNPTKPFKLELAIYP  184 (487)
Q Consensus       156 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~  184 (487)
                      +..+++.+|+..|.+...++.+..+++..
T Consensus       232 gk~evvr~ll~~gin~h~~n~~~qtaldi  260 (854)
T KOG0507|consen  232 GKAEVVRFLLEIGINTHIKNQHGQTALDI  260 (854)
T ss_pred             CcchhhhHHHhhccccccccccchHHHHH
Confidence            99999999999999988888666655443

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.79  E-value=1e-18  Score=191.57  Aligned_cols=145  Identities=15%  Similarity=0.082  Sum_probs=121.6

Q ss_pred             CCCChHHHHHHhCCCcHHHHHHHHHc--CCCccccCCCCCCCcHHH-HHHHhCCHHHHHHHHHcCCC-------------
Q 040660           38 KEGKTPLIAACMNPGLYDVAKTLIEL--GAKVDAYRPGRHGGTPLH-HAAKRGLERTVKLLLSYGAN-------------  101 (487)
Q Consensus        38 ~~G~TpL~~A~~~~g~~~~v~~Ll~~--ga~~~~~~~d~~g~TpLh-~Aa~~g~~~~v~~Ll~~ga~-------------  101 (487)
                      ..+...|+.|+.. |+.+.++.+++.  +.++|..  |..|.|||| .|+..++.+++++|++.|+.             
T Consensus        15 ~~~~~~~l~A~~~-g~~~~v~~lL~~~~~~~in~~--d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~   91 (743)
T TIGR00870        15 SDEEKAFLPAAER-GDLASVYRDLEEPKKLNINCP--DRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISL   91 (743)
T ss_pred             CHHHHHHHHHHHc-CCHHHHHHHhccccccCCCCc--CccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHh
Confidence            4567999999999 999999999999  8888887  899999999 88888899999999988730             


Q ss_pred             ---------------cc--------------cccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc-----------
Q 040660          102 ---------------AL--------------VLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE-----------  141 (487)
Q Consensus       102 ---------------~~--------------~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-----------  141 (487)
                                     ..              ..+..|.||||+|+.+|+.++|++|+++|++++  .++           
T Consensus        92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~--~~~~~~~~~~~~~~  169 (743)
T TIGR00870        92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP--ARACGDFFVKSQGV  169 (743)
T ss_pred             ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC--cCcCCchhhcCCCC
Confidence                           00              012358999999999999999999999999988  432           


Q ss_pred             ---cCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccc
Q 040660          142 ---LYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLD  188 (487)
Q Consensus       142 ---~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~  188 (487)
                         ..|.|||| .|+..++.+++++|+++|++.+.++..+...++.+...
T Consensus       170 ~~~~~g~tpL~-~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       170 DSFYHGESPLN-AAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVME  218 (743)
T ss_pred             CcccccccHHH-HHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhh
Confidence               36899999 88899999999999999999888887666666655543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=2.6e-19  Score=162.17  Aligned_cols=130  Identities=27%  Similarity=0.309  Sum_probs=118.1

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      |..|.+|||||++.|+..+|+.||..|+.+|..+....||||+|+.+ ||.++|+.||+..+|+|+.  +..|.||||||
T Consensus        31 ddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah-ghrdivqkll~~kadvnav--nehgntplhya  107 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH-GHRDIVQKLLSRKADVNAV--NEHGNTPLHYA  107 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc-ccHHHHHHHHHHhcccchh--hccCCCchhhh
Confidence            56688999999999999999999999999999999999999999999 9999999999999999998  99999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS  136 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  136 (487)
                      |-.|...+.+-|+.+|+.+++.|+.|.|||..|--.-..-+.++-.++|..++
T Consensus       108 cfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n  160 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN  160 (448)
T ss_pred             hhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999998754444445555556776665

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.78  E-value=1.4e-18  Score=137.66  Aligned_cols=89  Identities=38%  Similarity=0.507  Sum_probs=61.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHH
Q 040660           11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLER   90 (487)
Q Consensus        11 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~   90 (487)
                      ||+|++.|+.+++++|++.+.+++.    |.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAEN-GNLEIVKLLLENGADINSQ--DKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHT-TTHHHHHHHHHTTTCTT-B--STTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHc-CCHHHHHHHHHhccccccc--CCCCCCHHHHHHHcCCHH
Confidence            5777777777777777777666655    66777777777 7777777777777777766  677777777777777777


Q ss_pred             HHHHHHHcCCCccccc
Q 040660           91 TVKLLLSYGANALVLN  106 (487)
Q Consensus        91 ~v~~Ll~~ga~~~~~d  106 (487)
                      ++++|+++|++++.+|
T Consensus        74 ~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCCCCCcC
Confidence            7777777777776654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=1.8e-18  Score=145.62  Aligned_cols=140  Identities=24%  Similarity=0.077  Sum_probs=116.3

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHcCCC-ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC
Q 040660           42 TPLIAACMNPGLYDVAKTLIELGAK-VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG  120 (487)
Q Consensus        42 TpL~~A~~~~g~~~~v~~Ll~~ga~-~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g  120 (487)
                      --+.+|+.. +.+..|+.||+..++ +|.+  |.+|+||||-|+.+|+.+||+.|+..||+++++...||||||-|+...
T Consensus        65 rl~lwaae~-nrl~eV~~lL~e~an~vNtr--D~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn  141 (228)
T KOG0512|consen   65 RLLLWAAEK-NRLTEVQRLLSEKANHVNTR--DEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN  141 (228)
T ss_pred             HHHHHHHhh-ccHHHHHHHHHhcccccccc--ccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence            346789999 889999999988765 7777  999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcC-CCCCCCCCCccchhccccc
Q 040660          121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPT-GSRNPTKPFKLELAIYPSL  186 (487)
Q Consensus       121 ~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~  186 (487)
                      +.+++-+|+++|++++  .......||||+.|...+....+.+|+.. +.....+....++++..+-
T Consensus       142 N~~va~~LLqhgaDVn--A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR  206 (228)
T KOG0512|consen  142 NFEVAGRLLQHGADVN--AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR  206 (228)
T ss_pred             chhHHHHHHhccCccc--ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence            9999999999999999  88888999999555555666667776643 4444444444555554443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.76  E-value=3.4e-18  Score=175.56  Aligned_cols=160  Identities=23%  Similarity=0.190  Sum_probs=141.8

Q ss_pred             CCchHHHHHHHH---cCCHHHHHHHHHcCCC-CCc----cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----
Q 040660            5 QSKEELLYQQVN---YGNVEGIKALCRDGAG-LEW----IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-----   71 (487)
Q Consensus         5 ~~g~t~L~~Aa~---~g~~~~v~~Ll~~g~~-~~~----~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-----   71 (487)
                      ..|+|.||.|..   .++.++++.||+.-.. +|.    -...|.||||+|+.+ .+.++|++|++.|||++++.     
T Consensus       141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~-~~~~~V~lLl~~gADV~aRa~G~FF  219 (782)
T KOG3676|consen  141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVN-RDAELVRLLLAAGADVHARACGAFF  219 (782)
T ss_pred             chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHh-ccHHHHHHHHHcCCchhhHhhcccc
Confidence            469999999997   4667999999986332 111    235799999999999 99999999999999999883     


Q ss_pred             -C---------------CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc-
Q 040660           72 -P---------------GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI-  134 (487)
Q Consensus        72 -~---------------d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~-  134 (487)
                       +               -..|..||.+||..++.+++++|+++|||++++|.+|+|.||..+.+...++..+++++|++ 
T Consensus       220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~  299 (782)
T KOG3676|consen  220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA  299 (782)
T ss_pred             CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence             1               13488999999999999999999999999999999999999999999999999999999999 


Q ss_pred             -ccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660          135 -FSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG  168 (487)
Q Consensus       135 -~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g  168 (487)
                       ..  .+|+.|.|||. +|+..+..++.+.+++..
T Consensus       300 l~~--v~N~qgLTPLt-LAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  300 LEH--VRNNQGLTPLT-LAAKLGKKEMFQHILERR  331 (782)
T ss_pred             ccc--ccccCCCChHH-HHHHhhhHHHHHHHHHhh
Confidence             66  99999999999 999999999999999884

>PHA02792 ankyrin-like protein; Provisional

Probab=99.76  E-value=1.1e-17  Score=172.50  Aligned_cols=156  Identities=16%  Similarity=0.113  Sum_probs=132.4

Q ss_pred             HHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCC--CCcHHHHHH
Q 040660            9 ELLYQQVNYG--NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH--GGTPLHHAA   84 (487)
Q Consensus         9 t~L~~Aa~~g--~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~--g~TpLh~Aa   84 (487)
                      -.||.=.+.+  +.+++++|+++|++++ + ..+...++.|+.. |+.+++++|+++|++++.+  |.+  +.||||+|+
T Consensus       308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-r-~~~~n~~~~Aa~~-gn~eIVelLIs~GADIN~k--D~~g~~~TpLh~A~  382 (631)
T PHA02792        308 DLLSEYVSYHTVYINVIKCMIDEGATLY-R-FKHINKYFQKFDN-RDPKVVEYILKNGNVVVED--DDNIINIMPLFPTL  382 (631)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHCCCccc-c-CCcchHHHHHHHc-CCHHHHHHHHHcCCchhhh--cCCCCChhHHHHHH
Confidence            3566666666  7899999999999975 2 2356779999999 9999999999999999988  555  569999987


Q ss_pred             HhCCH---HHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh-------
Q 040660           85 KRGLE---RTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ-------  154 (487)
Q Consensus        85 ~~g~~---~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~-------  154 (487)
                      .....   +++++|+++|+|++.+|..|+||||+|+..++.+++++|+++|++++  .+|..|.|||+ .|..       
T Consensus       383 ~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN--~kD~~G~TpL~-~A~~~~~~~~~  459 (631)
T PHA02792        383 SIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN--ITTKYGSTCIG-ICVILAHACIP  459 (631)
T ss_pred             HhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHHHhcccH
Confidence            76654   46899999999999999999999999999999999999999999999  99999999999 5543       


Q ss_pred             ---cCCHHHHHHhhcCCCCCC
Q 040660          155 ---LLSRKVWVAVLPTGSRNP  172 (487)
Q Consensus       155 ---~~~~~~~~~Ll~~g~~~~  172 (487)
                         ....+++++|+++|.+..
T Consensus       460 ~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        460 EIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHHHHHHHHHhcCCChh
Confidence               223567999999997764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.76  E-value=1.7e-17  Score=139.41  Aligned_cols=124  Identities=36%  Similarity=0.519  Sum_probs=103.8

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|.+|.|+||+|+..|+.++++.|++++.+.+..+..|.||||+|+.. ++.+++++|++.|++++..  +..|.||+|+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~--~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEKGADVNAR--DKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCCCCHHHH
Confidence            456788888888888888888888888888778888888888888888 8888888888888877776  7788888888


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE  129 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  129 (487)
                      |+..++.+++++|+..+.+++..|..|.|||++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            88888888888888888888888888888888888888888888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=5.9e-18  Score=134.14  Aligned_cols=89  Identities=34%  Similarity=0.437  Sum_probs=81.4

Q ss_pred             HHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHH
Q 040660           44 LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN  123 (487)
Q Consensus        44 L~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~  123 (487)
                      ||+|++. |+++++++|++.+.+++.      |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.+
T Consensus         1 L~~A~~~-~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQN-GNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHT-TTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHc-CCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            7999999 999999999999877753      889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcccccccc
Q 040660          124 VVRAIENHICIFSGWLRE  141 (487)
Q Consensus       124 ~v~~Ll~~ga~~~~~~~d  141 (487)
                      ++++|+++|++++  .+|
T Consensus        74 ~~~~Ll~~g~~~~--~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVN--IRN   89 (89)
T ss_dssp             HHHHHHHTTT-TT--SS-
T ss_pred             HHHHHHHcCCCCC--CcC
Confidence            9999999999987  543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.73  E-value=1.1e-16  Score=134.46  Aligned_cols=125  Identities=38%  Similarity=0.449  Sum_probs=116.8

Q ss_pred             ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHH
Q 040660           35 WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLE  114 (487)
Q Consensus        35 ~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~  114 (487)
                      .+|..|.||||+|+.. ++.+++++|++.+.+.+..  +..|.||||+|+..+..+++++|++.|++++..+..|.||+|
T Consensus         2 ~~~~~g~t~l~~a~~~-~~~~~i~~li~~~~~~~~~--~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~   78 (126)
T cd00204           2 ARDEDGRTPLHLAASN-GHLEVVKLLLENGADVNAK--DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLH   78 (126)
T ss_pred             CcCcCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            4567899999999999 9999999999999998776  899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660          115 VARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL  165 (487)
Q Consensus       115 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll  165 (487)
                      +|+..++.+++++|++++.+++  ..+..|.|+++ .+...+..+++++|+
T Consensus        79 ~a~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~Ll  126 (126)
T cd00204          79 LAARNGNLDVVKLLLKHGADVN--ARDKDGRTPLH-LAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhcCCHHHHHHhC
Confidence            9999999999999999998888  88899999999 788888999988874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.72  E-value=8.1e-18  Score=175.26  Aligned_cols=166  Identities=30%  Similarity=0.320  Sum_probs=157.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK   85 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~   85 (487)
                      +-+|+|-.|+..||.|+|++|+..|++++.+|..|++||.+|+.. ||..+|+.|+++.++++.+. |+.+.|+|-+||.
T Consensus       756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaata-gh~tvV~~llk~ha~veaQs-drtkdt~lSlacs  833 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATA-GHITVVQDLLKAHADVEAQS-DRTKDTMLSLACS  833 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhccc-CchHHHHHHHhhhhhhhhhc-ccccCceEEEecC
Confidence            457899999999999999999999999999999999999999999 99999999999999999884 9999999999999


Q ss_pred             hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660           86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL  165 (487)
Q Consensus        86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll  165 (487)
                      .|..++|++||..|++-..++...+|||.+|..-|.+++|.+|+.+|..++.....+.|-.||+ +|..+++.+..+.|+
T Consensus       834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm-latmngh~~at~~ll  912 (2131)
T KOG4369|consen  834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM-LATMNGHQAATLSLL  912 (2131)
T ss_pred             CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh-hhhhccccHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998885566688999999 999999999999999


Q ss_pred             cCCCCCCCC
Q 040660          166 PTGSRNPTK  174 (487)
Q Consensus       166 ~~g~~~~~~  174 (487)
                      +.|.+++..
T Consensus       913 ~~gsdiNaq  921 (2131)
T KOG4369|consen  913 QPGSDINAQ  921 (2131)
T ss_pred             cccchhccc
Confidence            999997643

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.67  E-value=2e-16  Score=119.23  Aligned_cols=101  Identities=27%  Similarity=0.277  Sum_probs=67.9

Q ss_pred             HHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCH
Q 040660           43 PLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT  122 (487)
Q Consensus        43 pL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~  122 (487)
                      -++|++.+ |.++-|+..+..|-++|-   -..|++|||||+..|+.+++++|+..|++++.+|+.|-|||.-|+..||.
T Consensus         5 ~~~W~vkN-G~~DeVk~~v~~g~nVn~---~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    5 SVAWNVKN-GEIDEVKQSVNEGLNVNE---IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hHhhhhcc-CcHHHHHHHHHccccHHH---HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            35566666 666666666666666664   34667777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHhCCCcccccccccCCCCHHH
Q 040660          123 NVVRAIENHICIFSGWLRELYGPGFLE  149 (487)
Q Consensus       123 ~~v~~Ll~~ga~~~~~~~d~~G~t~L~  149 (487)
                      ++|++|+++|++-.  .+-.+|.+.+.
T Consensus        81 ~cVklLL~~GAdrt--~~~PdG~~~~e  105 (117)
T KOG4214|consen   81 DCVKLLLQNGADRT--IHAPDGTALIE  105 (117)
T ss_pred             HHHHHHHHcCcccc--eeCCCchhHHh
Confidence            77777777777655  55566665555

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=1.1e-15  Score=142.37  Aligned_cols=130  Identities=32%  Similarity=0.348  Sum_probs=91.1

Q ss_pred             CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC-----HHHHHHHHHcCC---Cccc
Q 040660           33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL-----ERTVKLLLSYGA---NALV  104 (487)
Q Consensus        33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~-----~~~v~~Ll~~ga---~~~~  104 (487)
                      ....+..+.+++|+++.. +..+++++|+..|++++.+  |..|.||||+|+..|+     .+++++|++.|+   +.+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          66 LAARDLDGRLPLHSAASK-GDDKIVKLLLASGADVNAK--DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             cccCCccccCHHHHHHHc-CcHHHHHHHHHcCCCcccc--cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            334555667777777777 6667777777777777665  6777777777777777     777777777777   4445


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660          105 LNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG  168 (487)
Q Consensus       105 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g  168 (487)
                      +|..|+||||+|+..|+.+++++|++.|++++  .++..|.|+++ .+...+..+++..++..+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALD-PAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchh-hhcccchHHHHHHHHhcC
Confidence            57777777777777777777777777777776  66777777777 677777777777777655

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.64  E-value=1.5e-15  Score=114.58  Aligned_cols=104  Identities=29%  Similarity=0.395  Sum_probs=95.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC
Q 040660            8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG   87 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g   87 (487)
                      +.-++|++++|.++-|+.....|.++|.. ..|++|||||+-. |+.+++++|+..|++++.+  |+.|-|||.-|+..|
T Consensus         3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~-GQl~ilefli~iGA~i~~k--DKygITPLLsAvwEG   78 (117)
T KOG4214|consen    3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADY-GQLSILEFLISIGANIQDK--DKYGITPLLSAVWEG   78 (117)
T ss_pred             chhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhc-chHHHHHHHHHhccccCCc--cccCCcHHHHHHHHh
Confidence            35678999999999999999999888755 3899999999999 9999999999999999987  999999999999999


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCCHHHH
Q 040660           88 LERTVKLLLSYGANALVLNDDCQTPLEV  115 (487)
Q Consensus        88 ~~~~v~~Ll~~ga~~~~~d~~g~TpL~~  115 (487)
                      |.++|++||..|+|-..+..+|.+.+..
T Consensus        79 H~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             hHHHHHHHHHcCcccceeCCCchhHHhh
Confidence            9999999999999988888889776654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.64  E-value=2.6e-16  Score=164.24  Aligned_cols=169  Identities=20%  Similarity=0.202  Sum_probs=135.3

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      |..|+|+|-+|+..|..++|++||..|++-..++-..+|||.+|... |.+++|++|+.+|+.+|.+-..+.|-.||++|
T Consensus       821 drtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sg-gy~~iI~~llS~GseInSrtgSklgisPLmla  899 (2131)
T KOG4369|consen  821 DRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSG-GYTKIIHALLSSGSEINSRTGSKLGISPLMLA  899 (2131)
T ss_pred             ccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCc-chHHHHHHHhhcccccccccccccCcchhhhh
Confidence            56677777777777777777777777777777777777888777777 77788888888887777765566777888888


Q ss_pred             HHhCCHHHHHHHHHcCCCcccc-cCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           84 AKRGLERTVKLLLSYGANALVL-NDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~-d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      ...||.+.++.||+.|-|+|+. ..+-+|+|-+|+..|..++|.+||.+.+++.  .+-+.|.|||+ -++..+..++-.
T Consensus       900 tmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anve--hRaktgltplm-e~AsgGyvdvg~  976 (2131)
T KOG4369|consen  900 TMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVE--HRAKTGLTPLM-EMASGGYVDVGN  976 (2131)
T ss_pred             hhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhh--hhcccCCcccc-hhhcCCccccch
Confidence            8888888888888888777763 3466788888888888888888888888887  88899999999 899999999999


Q ss_pred             HhhcCCCCCCCCCC
Q 040660          163 AVLPTGSRNPTKPF  176 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~  176 (487)
                      +|+..|++.+..+.
T Consensus       977 ~li~~gad~nasPv  990 (2131)
T KOG4369|consen  977 LLIAAGADTNASPV  990 (2131)
T ss_pred             hhhhcccccccCCC
Confidence            99999999876553

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.63  E-value=1.2e-15  Score=157.09  Aligned_cols=127  Identities=24%  Similarity=0.249  Sum_probs=118.4

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCcc---------C--------------CCCChHHHHHHhCCCcHHHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWI---------D--------------KEGKTPLIAACMNPGLYDVAKT   59 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~---------d--------------~~G~TpL~~A~~~~g~~~~v~~   59 (487)
                      -...|.|+||+|+.+.+.++|++||+.|||++.+         |              ..|..||.+||.. ++.|++++
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~-nq~eivrl  258 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT-NQPEIVRL  258 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHc-CCHHHHHH
Confidence            3567999999999999999999999999998763         1              2478999999999 99999999


Q ss_pred             HHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC--cccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660           60 LIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN--ALVLNDDCQTPLEVARAKGFTNVVRAIENHI  132 (487)
Q Consensus        60 Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~--~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  132 (487)
                      |+++|||++++  |.+|+|.||..+..-..++..++|++|++  ...+|+.|.|||.+|++.|+.++.+.+++..
T Consensus       259 Ll~~gAd~~aq--DS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  259 LLAHGADPNAQ--DSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR  331 (782)
T ss_pred             HHhcCCCCCcc--ccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence            99999999998  99999999999999889999999999999  8899999999999999999999999999983

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.63  E-value=2.3e-15  Score=136.65  Aligned_cols=124  Identities=28%  Similarity=0.328  Sum_probs=116.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660            7 KEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR   86 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~   86 (487)
                      -..+|..++-+|+.+.+..||+---.+|.+|..|+++|..|+.+ |+.+++++||++|+|+|.. .+..++||||+||..
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAayk-Gnl~~v~lll~~gaDvN~~-qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYK-GNLTLVELLLELGADVNDK-QHGTLYTPLMFAALS   89 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhc-CcHHHHHHHHHhCCCcCcc-cccccccHHHHHHHc
Confidence            45889999999999999999998666999999999999999999 9999999999999999986 588899999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660           87 GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI  132 (487)
Q Consensus        87 g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  132 (487)
                      |+.++.++|++.|+.+...|.-|+|+-.+|+.-||.++|..+-++-
T Consensus        90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~  135 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI  135 (396)
T ss_pred             CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence            9999999999999999999999999999999999999999886553

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=2.4e-14  Score=133.26  Aligned_cols=126  Identities=33%  Similarity=0.373  Sum_probs=119.1

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc-----HHHHHHHHHcCC---CccccCCCCC
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL-----YDVAKTLIELGA---KVDAYRPGRH   75 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~-----~~~v~~Ll~~ga---~~~~~~~d~~   75 (487)
                      +..+.+++|+++..++.+++++|+..|++++.+|..|.||||+|+.. ++     .+++++||+.|+   ..+.+  |..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~ll~~g~~~~~~~~~--~~~  146 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN-GNPPEGNIEVAKLLLEAGADLDVNNLR--DED  146 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhc-CCcccchHHHHHHHHHcCCCCCCcccc--CCC
Confidence            34578999999999999999999999999999999999999999999 98     999999999999   55554  999


Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660           76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI  132 (487)
Q Consensus        76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  132 (487)
                      |.||||+|+..|+.+++++|++.|++++.++..|.|+|++|+..++.++++.|++.+
T Consensus       147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=3e-14  Score=153.04  Aligned_cols=106  Identities=33%  Similarity=0.435  Sum_probs=98.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660            9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL   88 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~   88 (487)
                      ..||.|+..|+.+.|+.|++.|+++|.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|+..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~-g~~eiv~~LL~~Gadvn~~--d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLL--DKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCc
Confidence            458899999999999999999999999999999999999999 9999999999999999998  9999999999999999


Q ss_pred             HHHHHHHHHc-------CCCcccccCCCCCHHHHHH
Q 040660           89 ERTVKLLLSY-------GANALVLNDDCQTPLEVAR  117 (487)
Q Consensus        89 ~~~v~~Ll~~-------ga~~~~~d~~g~TpL~~A~  117 (487)
                      .+++++|+++       |++++..+..|.+++..+.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999998       8888888888888877554

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.54  E-value=2.9e-14  Score=153.18  Aligned_cols=103  Identities=30%  Similarity=0.399  Sum_probs=96.2

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCC
Q 040660           42 TPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF  121 (487)
Q Consensus        42 TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~  121 (487)
                      +.||.|+.. |+.+++++|++.|+++|.+  |..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+
T Consensus        84 ~~L~~aa~~-G~~~~vk~LL~~Gadin~~--d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAAS-GDAVGARILLTGGADPNCR--DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence            358899999 9999999999999999998  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC-------CCcccccccccCCCCHHH
Q 040660          122 TNVVRAIENH-------ICIFSGWLRELYGPGFLE  149 (487)
Q Consensus       122 ~~~v~~Ll~~-------ga~~~~~~~d~~G~t~L~  149 (487)
                      .+++++|+++       |++.+  ..+..|.+++.
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~--~~~~~g~~~~~  193 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAK--PDSFTGKPPSL  193 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCC--ccccCCCCccc
Confidence            9999999999       78777  77777777766

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.52  E-value=8.3e-16  Score=102.21  Aligned_cols=53  Identities=40%  Similarity=0.901  Sum_probs=49.5

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccceeEeee
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~~~~y~  486 (487)
                      .+|.||+|.+.+.|++.|||+++|++|..++++. ...||+||++|..+||.|.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~   61 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR   61 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence            5899999999999999999999999999998874 6689999999999999985

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=4e-14  Score=138.20  Aligned_cols=115  Identities=19%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             HHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 040660           47 ACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR  126 (487)
Q Consensus        47 A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~  126 (487)
                      |+.. |.+|+|+..+..--|+..-  +..|-|+||-|+..||.+||+|||+.|+++|+.|.+||||||+|+..+++.+++
T Consensus       557 aaLe-GEldlVq~~i~ev~DpSqp--NdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck  633 (752)
T KOG0515|consen  557 AALE-GELDLVQRIIYEVTDPSQP--NDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK  633 (752)
T ss_pred             hhhc-chHHHHHHHHHhhcCCCCC--CccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence            5555 6667776666655555543  666777777777777777777777777777777777777777777777777777


Q ss_pred             HHHhCCCcccccccccCCCCHHHHHh--hhcCCHHHHHHhhc
Q 040660          127 AIENHICIFSGWLRELYGPGFLELLA--PQLLSRKVWVAVLP  166 (487)
Q Consensus       127 ~Ll~~ga~~~~~~~d~~G~t~L~~~a--~~~~~~~~~~~Ll~  166 (487)
                      .|++.|+-+.. ..=.++.|+.. -+  ...++..+.++|..
T Consensus       634 qLVe~GaavfA-sTlSDmeTa~e-KCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  634 QLVESGAAVFA-STLSDMETAAE-KCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHhccceEEe-eecccccchhh-hcchhhhhHHHHHHHHHH
Confidence            77777765541 22244556665 23  23445556666653

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.49  E-value=2.9e-14  Score=101.86  Aligned_cols=55  Identities=47%  Similarity=0.664  Sum_probs=24.2

Q ss_pred             HHHcC-CCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHH
Q 040660           60 LIELG-AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA  116 (487)
Q Consensus        60 Ll~~g-a~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A  116 (487)
                      ||++| ++++.+  |..|.||||+|+..|+.++|++|++.|+|++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~--d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQ--DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT-----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCc--CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45555 666665  66777777777777777777777777777777777777777765

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.4e-13  Score=134.47  Aligned_cols=118  Identities=28%  Similarity=0.360  Sum_probs=106.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660            9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL   88 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~   88 (487)
                      -.|.-|+..|.+++|+..+..=-|+...|..|.|+||-|+.. ||.+||+|||+.|+|+|..  |.+||||||.||..++
T Consensus       552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa-ghyeIVkFLi~~ganVNa~--DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICA-GHYEIVKFLIEFGANVNAA--DSDGWTPLHCAASCNN  628 (752)
T ss_pred             HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc-chhHHHHHHHhcCCcccCc--cCCCCchhhhhhhcCc
Confidence            456779999999999999998888999999999999999999 9999999999999999998  9999999999999999


Q ss_pred             HHHHHHHHHcCCCccccc-CCCCCHHHHHH--HcCCHHHHHHHH
Q 040660           89 ERTVKLLLSYGANALVLN-DDCQTPLEVAR--AKGFTNVVRAIE  129 (487)
Q Consensus        89 ~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~--~~g~~~~v~~Ll  129 (487)
                      +.+++.|++.|+-|.+.. .++.|+..-+-  +.|..+|.+||.
T Consensus       629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence            999999999999887744 67889877654  467889999995

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.46  E-value=1.6e-13  Score=97.39  Aligned_cols=54  Identities=41%  Similarity=0.569  Sum_probs=32.2

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 040660           76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE  129 (487)
Q Consensus        76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  129 (487)
                      |+|+||+|++.|+.+++++|++.|+|++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666666666666666666666666664

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.43  E-value=1.2e-13  Score=98.72  Aligned_cols=55  Identities=40%  Similarity=0.519  Sum_probs=33.4

Q ss_pred             HHHcC-CCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660           26 LCRDG-AGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus        26 Ll~~g-~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      ||++| ++++.+|..|+||||+||.. |+.+++++|++.|++++.+  |..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~-g~~~~v~~Ll~~g~d~~~~--d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARY-GHSEVVRLLLQNGADPNAK--DKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHH-T-HHHHHHHHHCT--TT-----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHc-CcHHHHHHHHHCcCCCCCC--cCCCCCHHHhC
Confidence            67887 89999999999999999999 9999999999999999998  99999999997

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.43  E-value=8.4e-13  Score=120.20  Aligned_cols=122  Identities=24%  Similarity=0.210  Sum_probs=111.2

Q ss_pred             CChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccc-ccCCCCCHHHHHHH
Q 040660           40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALV-LNDDCQTPLEVARA  118 (487)
Q Consensus        40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~-~d~~g~TpL~~A~~  118 (487)
                      -..+|.-++-+ |..+-...||.---++|.+  |..|+++|..|+..|+.++|++||+.|+|+|. ++..++||||+|+.
T Consensus        12 ~~~~Lle~i~K-ndt~~a~~LLs~vr~vn~~--D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDK-NDTEAALALLSTVRQVNQR--DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHcc-CcHHHHHHHHHHhhhhhcc--CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            35789999988 9999999999886778888  99999999999999999999999999999987 56789999999999


Q ss_pred             cCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcC
Q 040660          119 KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPT  167 (487)
Q Consensus       119 ~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~  167 (487)
                      .|+.++.++|++.|+...  ..|.-|+|+-. .|+..|+.+++.++-.+
T Consensus        89 SGn~dvcrllldaGa~~~--~vNsvgrTAaq-mAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMY--LVNSVGRTAAQ-MAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCccc--cccchhhhHHH-HHHHhcchHHHHHHhcc
Confidence            999999999999999998  99999999999 89999999998877543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.42  E-value=2.8e-13  Score=96.14  Aligned_cols=54  Identities=46%  Similarity=0.645  Sum_probs=25.3

Q ss_pred             CChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHH
Q 040660           40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL   96 (487)
Q Consensus        40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll   96 (487)
                      |.||||+|+.. |+.+++++|+++|.+++.+  |.+|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~-g~~~~~~~Ll~~~~din~~--d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARS-GNLEIVKLLLEHGADINAQ--DEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHT-T-HHHHHHHHHTTSGTT-B---TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHh-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHccCHHHHHHHC
Confidence            44555555555 5555555555555555554  455555555555555555555543

...

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.31  E-value=1.1e-12  Score=91.18  Aligned_cols=48  Identities=35%  Similarity=0.917  Sum_probs=42.2

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccce
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV  481 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  481 (487)
                      ..|.||++.+.+++++||||.++|..|+.++......||+||++|+++
T Consensus         3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV   50 (50)
T ss_dssp             SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred             CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence            589999999999999999999559999999988888999999999864

...

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.9e-12  Score=117.64  Aligned_cols=51  Identities=39%  Similarity=0.998  Sum_probs=48.8

Q ss_pred             ccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeeeC
Q 040660          433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV  487 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~v  487 (487)
                      ..+|.||||.+++.+|++|||++.|+.|.++|.    .||+||+.|.+++|||.|
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRqyi~rvvrif~~  350 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQYIVRVVRIFRV  350 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhccccc----cCchHHHHHHHHHhhhcC
Confidence            579999999999999999999999999999998    499999999999999986

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.2e-11  Score=116.94  Aligned_cols=56  Identities=29%  Similarity=0.858  Sum_probs=51.6

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      ++..+|+||+...++.+++||+|+++|..|++.+.-+...||+||++|...+.||.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~  343 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV  343 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence            44579999999999999999999999999999999777889999999999998874

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=4.5e-11  Score=106.41  Aligned_cols=56  Identities=36%  Similarity=0.785  Sum_probs=48.8

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc---CCcccccccccc--ceeEeee
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK---KWGCPVCRANIS--QVIRLYA  486 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~--~~~~~y~  486 (487)
                      .....+|.||+|..+++|++.|||.| |+.|+.+|...   +..||+|+..|+  +++.||-
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            34558999999999999999999999 99999999865   346999999986  6899984

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=1.5e-10  Score=106.18  Aligned_cols=50  Identities=38%  Similarity=0.900  Sum_probs=45.4

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEe
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRL  484 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~  484 (487)
                      ..|.+|+|...++..+||||.| |+.|+..|...+..||+||..+.  +++-+
T Consensus       240 ~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~pskvi~L  291 (293)
T KOG0317|consen  240 RKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPSKVICL  291 (293)
T ss_pred             CceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCcceeee
Confidence            6899999999999999999999 99999999999889999999986  44443

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.01  E-value=4.1e-10  Score=98.74  Aligned_cols=54  Identities=30%  Similarity=0.784  Sum_probs=46.0

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhcc----------------CCcccccccccc--ceeEee
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK----------------KWGCPVCRANIS--QVIRLY  485 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~----------------~~~CP~Cr~~i~--~~~~~y  485 (487)
                      .+..+|.||++...++++++|||.| |+.|+..|...                ...||+||..|.  .+++||
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            4457999999999999999999999 99999998531                347999999997  477777

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.95  E-value=2.7e-09  Score=104.12  Aligned_cols=98  Identities=29%  Similarity=0.434  Sum_probs=87.1

Q ss_pred             CccCCCCChH------HHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccC
Q 040660           34 EWIDKEGKTP------LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLND  107 (487)
Q Consensus        34 ~~~d~~G~Tp------L~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~  107 (487)
                      -.+|.+|-|.      ||-.++. |+.++.-.||..|+++|..++ ..|.||||.|++.|+..-+++|+-+|||+++.|.
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt-~nlet~LRll~lGA~~N~~hp-ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~  198 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRT-GNLETCLRLLSLGAQANFFHP-EKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS  198 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhc-ccHHHHHHHHHcccccCCCCc-ccCCchhHHHHhccchhhhhHHhhccCCCCCCCC
Confidence            3466666654      7888888 999999999999999999863 5799999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCC
Q 040660          108 DCQTPLEVARAKGFTNVVRAIENHIC  133 (487)
Q Consensus       108 ~g~TpL~~A~~~g~~~~v~~Ll~~ga  133 (487)
                      +|.||+.+|...||-++.+.|++...
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e~~y  224 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVEIQY  224 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHHHHH
Confidence            99999999999999999999886543

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=3.6e-10  Score=96.12  Aligned_cols=52  Identities=38%  Similarity=0.880  Sum_probs=45.2

Q ss_pred             ccccccccccCCceE--EcCCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660          433 TSSCVICLDAPVEGA--CVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY  485 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~--~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y  485 (487)
                      ...|+|||+....-+  -..|||.| |..|++.......+||+||+.|+  ++++||
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~  186 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY  186 (187)
T ss_pred             ccCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence            378999999775554  47999999 99999999988889999999886  688888

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.94  E-value=9.2e-10  Score=106.85  Aligned_cols=97  Identities=22%  Similarity=0.244  Sum_probs=87.5

Q ss_pred             cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHH-cCCCcccccCCCCCHHH
Q 040660           36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLE  114 (487)
Q Consensus        36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpL~  114 (487)
                      ++.++.-.++||+.. |.+..++.+.-.|.|++.+  |.+.+|+||+||..|+.+++++||+ .+.+++.+|.+|+|||.
T Consensus       502 ~~~~~~i~~~~aa~~-GD~~alrRf~l~g~D~~~~--DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlD  578 (622)
T KOG0506|consen  502 RENDTVINVMYAAKN-GDLSALRRFALQGMDLETK--DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLD  578 (622)
T ss_pred             ccccchhhhhhhhhc-CCHHHHHHHHHhccccccc--ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcch
Confidence            345677889999999 9999999999999999998  9999999999999999999999997 47899999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCcc
Q 040660          115 VARAKGFTNVVRAIENHICIF  135 (487)
Q Consensus       115 ~A~~~g~~~~v~~Ll~~ga~~  135 (487)
                      -|...+|.+++++|.+.....
T Consensus       579 dA~~F~h~~v~k~L~~~~~~y  599 (622)
T KOG0506|consen  579 DAKHFKHKEVVKLLEEAQYPY  599 (622)
T ss_pred             HhHhcCcHHHHHHHHHHhccc
Confidence            999999999999998776543

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.92  E-value=8.9e-10  Score=113.41  Aligned_cols=75  Identities=21%  Similarity=0.231  Sum_probs=56.3

Q ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccC-CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHH
Q 040660           73 GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLND-DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLE  149 (487)
Q Consensus        73 d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~  149 (487)
                      |..|+|+||+|+..|..+++++||++|+|++.+|. .|+||||-|+.+|+++++-+|+.+|+.+.  .+|+.|..||+
T Consensus        49 D~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~--i~Dkeglsplq  124 (1267)
T KOG0783|consen   49 DRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR--IKDKEGLSPLQ  124 (1267)
T ss_pred             HhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceE--EecccCCCHHH
Confidence            67777777777777777777777777777777774 57777777777777777777777777776  77777777777

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.86  E-value=9.7e-09  Score=101.69  Aligned_cols=119  Identities=21%  Similarity=0.255  Sum_probs=94.2

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCC--ccccCCCCCCCcHHHHHHHhCC
Q 040660           11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK--VDAYRPGRHGGTPLHHAAKRGL   88 (487)
Q Consensus        11 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~--~~~~~~d~~g~TpLh~Aa~~g~   88 (487)
                      |..|+..+++-.+..+-..|.++-.++.+-.+.||||+.. |+-++|++||.+|..  ++..  |..|.|+||-|+..++
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~t-g~~eivkyildh~p~elld~~--de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKT-GNGEIVKYILDHGPSELLDMA--DETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhc-CChHHHHHHHhcCCHHHHHHH--hhhhhHHHHHHHHhcc
Confidence            4566777776666666666778777888888888888888 888888888888754  4444  7788888888888888


Q ss_pred             HHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660           89 ERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI  132 (487)
Q Consensus        89 ~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  132 (487)
                      ..+.++|++.|+.+-..|..|.||-.-|-..|..++..||..+.
T Consensus       947 r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             hHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            88888888888888888888888888888888888888887553

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.85  E-value=1.6e-09  Score=70.80  Aligned_cols=38  Identities=42%  Similarity=1.001  Sum_probs=33.5

Q ss_pred             cccccccCCce-EEcCCCCccchHhhHHHHhccCCccccc
Q 040660          436 CVICLDAPVEG-ACVPCGHMAGCMSCLNEVKAKKWGCPVC  474 (487)
Q Consensus       436 C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CP~C  474 (487)
                      |+||++...++ ++++|||.| |+.|+.++...+.+||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence            89999999999 689999999 999999998888899998

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=8.1e-10  Score=104.73  Aligned_cols=53  Identities=40%  Similarity=0.911  Sum_probs=48.4

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      ......|+||.+.+.+.+++||||+++|..|.+.+..    ||+||+.|...+++|+
T Consensus       302 ~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~----CPvCR~rI~~~~k~y~  354 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQ----CPVCRQRIRLVRKRYR  354 (355)
T ss_pred             cCCCCceEEecCCccceeeecCCcEEEchHHHhhCCC----CchhHHHHHHHHHHhc
Confidence            4455799999999999999999999999999998875    9999999999999986

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.83  E-value=2.7e-09  Score=97.99  Aligned_cols=51  Identities=33%  Similarity=0.809  Sum_probs=43.7

Q ss_pred             cccccccccCCc--------eEEcCCCCccchHhhHHHHhccCCccccccccccceeEee
Q 040660          434 SSCVICLDAPVE--------GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY  485 (487)
Q Consensus       434 ~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y  485 (487)
                      .+|+||++...+        +++.+|||.| |..|+.+|...+..||+||..+..+++..
T Consensus       175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~r  233 (238)
T PHA02929        175 KECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKSR  233 (238)
T ss_pred             CCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeeee
Confidence            589999997543        3567899999 99999999988889999999999887654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.82  E-value=2.4e-09  Score=110.28  Aligned_cols=95  Identities=23%  Similarity=0.255  Sum_probs=83.3

Q ss_pred             HHHHHHHc-CCC-CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 040660           22 GIKALCRD-GAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG   99 (487)
Q Consensus        22 ~v~~Ll~~-g~~-~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g   99 (487)
                      -++-++.+ +.+ .|++|..|+|+||+++.. +..+++++||.+|++++.+| -..|+||||-|..+|+++++-+||.+|
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~-~k~~~l~wLlqhGidv~vqD-~ESG~taLHRaiyyG~idca~lLL~~g  109 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSE-NKNSFLRWLLQHGIDVFVQD-EESGYTALHRAIYYGNIDCASLLLSKG  109 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeecc-chhHHHHHHHhcCceeeecc-ccccchHhhHhhhhchHHHHHHHHhcC
Confidence            34444443 333 688999999999999999 99999999999999999985 467999999999999999999999999


Q ss_pred             CCcccccCCCCCHHHHHHH
Q 040660          100 ANALVLNDDCQTPLEVARA  118 (487)
Q Consensus       100 a~~~~~d~~g~TpL~~A~~  118 (487)
                      +.+.++|++|..||..-.+
T Consensus       110 ~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  110 RSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             CceEEecccCCCHHHHHhh
Confidence            9999999999999997765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.82  E-value=1.5e-08  Score=98.94  Aligned_cols=88  Identities=28%  Similarity=0.317  Sum_probs=81.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660            8 EELLYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR   86 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~   86 (487)
                      ..-||..++.|+.+..-.||..|+++|+.+ ..|.||||.|++. |+..-+++|+-+|+|++..  |.+|+||+.||-..
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~-Gq~~Q~ElL~vYGAD~~a~--d~~GmtP~~~AR~~  210 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKA-GQILQAELLAVYGADPGAQ--DSSGMTPVDYARQG  210 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhc-cchhhhhHHhhccCCCCCC--CCCCCcHHHHHHhc
Confidence            356999999999999999999999999988 4799999999999 9999999999999999998  99999999999999


Q ss_pred             CCHHHHHHHHHc
Q 040660           87 GLERTVKLLLSY   98 (487)
Q Consensus        87 g~~~~v~~Ll~~   98 (487)
                      ||-++.+-|++.
T Consensus       211 gH~~laeRl~e~  222 (669)
T KOG0818|consen  211 GHHELAERLVEI  222 (669)
T ss_pred             CchHHHHHHHHH
Confidence            999988887763

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.81  E-value=4.9e-09  Score=101.94  Aligned_cols=92  Identities=25%  Similarity=0.314  Sum_probs=85.2

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHc-CCCccccCCCCCCCcHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-GAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpLh~   82 (487)
                      +.++-..+++|++.|++..++.+.-.|.|++.+|.+.+|+||.|+.. |+++++++||+. +.+++.+  |.+|+|||--
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE-G~v~v~kfl~~~~kv~~~~k--DRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE-GHVEVVKFLLNACKVDPDPK--DRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc-CceeHHHHHHHHHcCCCChh--hccCCCcchH
Confidence            34566789999999999999999999999999999999999999999 999999999976 6788887  9999999999


Q ss_pred             HHHhCCHHHHHHHHHc
Q 040660           83 AAKRGLERTVKLLLSY   98 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~   98 (487)
                      |...+|.+++++|-+.
T Consensus       580 A~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhcCcHHHHHHHHHH
Confidence            9999999999999875

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.81  E-value=1.2e-08  Score=101.56  Aligned_cols=92  Identities=25%  Similarity=0.308  Sum_probs=67.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHcCCC--ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCC
Q 040660           44 LIAACMNPGLYDVAKTLIELGAK--VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF  121 (487)
Q Consensus        44 L~~A~~~~g~~~~v~~Ll~~ga~--~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~  121 (487)
                      |.-|+.. ..+..+-+||.+|..  +|....+.+|+|+||+||+.|++.+.++|+-+|+|+.++|.+|+|+|.||...|.
T Consensus       628 Ll~A~~~-~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAA-EDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHH-HHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            4445555 666777777777743  3333346667888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhCCCccc
Q 040660          122 TNVVRAIENHICIFS  136 (487)
Q Consensus       122 ~~~v~~Ll~~ga~~~  136 (487)
                      -+|+.+|+.+|+-..
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            888888888886543

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.79  E-value=2.1e-09  Score=72.41  Aligned_cols=40  Identities=40%  Similarity=0.885  Sum_probs=35.0

Q ss_pred             ccccccccC---CceEEcCCCCccchHhhHHHHhccCCcccccc
Q 040660          435 SCVICLDAP---VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCR  475 (487)
Q Consensus       435 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr  475 (487)
                      +|.||++..   ..++.++|||.| |..|+..|.+.+..||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence            699999876   467778999999 9999999999888999997

...

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.78  E-value=4.3e-09  Score=69.57  Aligned_cols=38  Identities=42%  Similarity=1.037  Sum_probs=30.6

Q ss_pred             cccccccCCceEEcCCCCccchHhhHHHHhccC----Cccccc
Q 040660          436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK----WGCPVC  474 (487)
Q Consensus       436 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CP~C  474 (487)
                      |+||++.+.+++.++|||.| |..|+.+++...    ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999 999999998763    259987

>PF13606 Ank_3: Ankyrin repeat

Probab=98.74  E-value=1.3e-08  Score=62.06  Aligned_cols=28  Identities=50%  Similarity=0.619  Sum_probs=12.9

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCcc
Q 040660           76 GGTPLHHAAKRGLERTVKLLLSYGANAL  103 (487)
Q Consensus        76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~  103 (487)
                      |+||||+|++.|+.++|++||++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4444444444444444444444444443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.73  E-value=1.7e-08  Score=63.35  Aligned_cols=31  Identities=52%  Similarity=0.680  Sum_probs=17.4

Q ss_pred             CCcHHHHHHHhCCHHHHHHHHHcCCCccccc
Q 040660           76 GGTPLHHAAKRGLERTVKLLLSYGANALVLN  106 (487)
Q Consensus        76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d  106 (487)
                      |.||||+|+..|+.+++++||++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5555555555555555555555555555544

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.69  E-value=6.7e-08  Score=95.86  Aligned_cols=119  Identities=18%  Similarity=0.095  Sum_probs=101.5

Q ss_pred             HHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC--cccccCCCCCHHHHHHHcCC
Q 040660           44 LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN--ALVLNDDCQTPLEVARAKGF  121 (487)
Q Consensus        44 L~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~--~~~~d~~g~TpL~~A~~~g~  121 (487)
                      |..|+.. +.+--++.+-..|.++-.+  +.+..+-||||++.|+.++|++||++|..  +++.|..|.|+||-|+..++
T Consensus       870 il~av~~-~D~~klqE~h~~gg~ll~~--~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLS-SDLMKLQETHLNGGSLLIQ--GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHh-ccHHHHHHHHhcCCceEee--CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence            3445555 5444444455678888887  88899999999999999999999999964  67788999999999999999


Q ss_pred             HHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660          122 TNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG  168 (487)
Q Consensus       122 ~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g  168 (487)
                      ..+..+|++.|+.+.  ..|..|.||-. -|.+.+..++..+|-.+.
T Consensus       947 r~vc~~lvdagasl~--ktd~kg~tp~e-raqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  947 RAVCQLLVDAGASLR--KTDSKGKTPQE-RAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             hHHHHHHHhcchhhe--ecccCCCChHH-HHHhcCCchHHHHHhhhh
Confidence            999999999999998  89999999999 899999999999887543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.66  E-value=6e-08  Score=96.56  Aligned_cols=90  Identities=28%  Similarity=0.351  Sum_probs=80.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCC--C--ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660            9 ELLYQQVNYGNVEGIKALCRDGAGL--E--WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~g~~~--~--~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      .-|.-|+...++..+.+||.+|...  |  .-+.+|.|+||+||.. |++.+.++||-+|+|+.++  |.+|+|+|.||-
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~-gnVvl~QLLiWyg~dv~~r--da~g~t~l~yar  702 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARK-GNVVLAQLLIWYGVDVMAR--DAHGRTALFYAR  702 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhh-cchhHHHHHHHhCccceec--ccCCchhhhhHh
Confidence            3467788889999999999998653  2  2345789999999999 9999999999999999998  999999999999


Q ss_pred             HhCCHHHHHHHHHcCCC
Q 040660           85 KRGLERTVKLLLSYGAN  101 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~  101 (487)
                      +.|..+++..||.+|+-
T Consensus       703 ~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  703 QAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hcccHHHHHHHHHcCCC
Confidence            99999999999999864

>PF13606 Ank_3: Ankyrin repeat

Probab=98.65  E-value=3.1e-08  Score=60.39  Aligned_cols=28  Identities=46%  Similarity=0.680  Sum_probs=17.5

Q ss_pred             CChHHHHHHhCCCcHHHHHHHHHcCCCcc
Q 040660           40 GKTPLIAACMNPGLYDVAKTLIELGAKVD   68 (487)
Q Consensus        40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~   68 (487)
                      |+||||+||.. |+.+++++||++|+|+|
T Consensus         2 G~T~Lh~A~~~-g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASN-GNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHh-CCHHHHHHHHHcCCCCC
Confidence            56666666666 66666666666666654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.62  E-value=9.2e-08  Score=94.84  Aligned_cols=85  Identities=26%  Similarity=0.322  Sum_probs=52.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC
Q 040660           10 LLYQQVNYGNVEGIKALCRD--GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG   87 (487)
Q Consensus        10 ~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g   87 (487)
                      +||+++...+.+-...++..  +..++.+|..|.||||+|+.. |+.+.++.|+.+|+++..+  ++.|+++||-|+..|
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~L-g~~~~a~~Ll~a~Adv~~k--N~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRL-GHVEAARILLSAGADVSIK--NNEGWSPLHEAVSTG   99 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHh-cCHHHHHHHHhcCCCcccc--ccccccHHHHHHHcC
Confidence            36666666555544443322  334566666666666666666 6666666666666666665  666666666666666


Q ss_pred             CHHHHHHHHH
Q 040660           88 LERTVKLLLS   97 (487)
Q Consensus        88 ~~~~v~~Ll~   97 (487)
                      +.+++..+|.
T Consensus       100 ~~q~i~~vlr  109 (560)
T KOG0522|consen  100 NEQIITEVLR  109 (560)
T ss_pred             CHHHHHHHHH
Confidence            6666655554

>PHA02926 zinc finger-like protein; Provisional

Probab=98.58  E-value=2.4e-08  Score=88.37  Aligned_cols=50  Identities=26%  Similarity=0.724  Sum_probs=39.7

Q ss_pred             cccccccccccCC---------ceEEcCCCCccchHhhHHHHhccC------Ccccccccccccee
Q 040660          432 ATSSCVICLDAPV---------EGACVPCGHMAGCMSCLNEVKAKK------WGCPVCRANISQVI  482 (487)
Q Consensus       432 ~~~~C~iC~~~~~---------~~~~~pCgH~~~C~~C~~~~~~~~------~~CP~Cr~~i~~~~  482 (487)
                      .+.+|.||+|...         -.++.+|+|.| |..|+..|...+      ..||+||..+..++
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~  233 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNIT  233 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence            3468999998742         25667999999 999999998742      35999999988654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.58  E-value=7.9e-08  Score=60.29  Aligned_cols=31  Identities=39%  Similarity=0.591  Sum_probs=19.7

Q ss_pred             CCChHHHHHHhCCCcHHHHHHHHHcCCCcccc
Q 040660           39 EGKTPLIAACMNPGLYDVAKTLIELGAKVDAY   70 (487)
Q Consensus        39 ~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~   70 (487)
                      +|+||||+|+.. |+.+++++||++|++++.+
T Consensus         1 dG~TpLh~A~~~-~~~~~v~~Ll~~ga~~~~~   31 (33)
T PF00023_consen    1 DGNTPLHYAAQR-GHPDIVKLLLKHGADINAR   31 (33)
T ss_dssp             TSBBHHHHHHHT-TCHHHHHHHHHTTSCTTCB
T ss_pred             CcccHHHHHHHH-HHHHHHHHHHHCcCCCCCC
Confidence            356666666666 6666666666666666654

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.56  E-value=2.5e-07  Score=96.97  Aligned_cols=121  Identities=18%  Similarity=0.107  Sum_probs=100.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDG----AGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g----~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      .+...+..|+++|+.-.|+..++..    .++|.+|.-|+++|++|+.+ .+.|++++|++++..+         ..+|-
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~n-enle~~eLLl~~~~~~---------gdALL   93 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDN-ENLELQELLLDTSSEE---------GDALL   93 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccc-ccHHHHHHHhcCcccc---------chHHH
Confidence            3455677899999999999999863    45788999999999999999 9999999999986544         34899


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcc----------cccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660           82 HAAKRGLERTVKLLLSYGANAL----------VLNDDCQTPLEVARAKGFTNVVRAIENHICIFS  136 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~----------~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  136 (487)
                      +|+..|..++|++|+.+-....          ..-..+-|||++||..++.||+++|+++|+.+.
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            9999999999999998643321          122356799999999999999999999999876

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.55  E-value=5e-08  Score=65.53  Aligned_cols=41  Identities=37%  Similarity=0.937  Sum_probs=35.0

Q ss_pred             ccccccccC---CceEEcCCCCccchHhhHHHHhccCCccccccc
Q 040660          435 SCVICLDAP---VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRA  476 (487)
Q Consensus       435 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~  476 (487)
                      .|.||++.+   ..+.+++|||.| |..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence            489999887   467789999999 99999999855568999985

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.55  E-value=1.7e-07  Score=93.01  Aligned_cols=87  Identities=28%  Similarity=0.394  Sum_probs=72.8

Q ss_pred             hHHHHHHhCCCcHHH-HHHHHHc-CCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHc
Q 040660           42 TPLIAACMNPGLYDV-AKTLIEL-GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAK  119 (487)
Q Consensus        42 TpL~~A~~~~g~~~~-v~~Ll~~-ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~  119 (487)
                      -|||+++.. ...+- .+.|+.. ...++.+  |..|.||||+|+..|+.+.++.|+..|+++..+|++||+|||.|+..
T Consensus        22 ~~lh~~~~~-~~~~sl~~el~~~~~~~id~~--D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVT-TDSDSLEQELLAKVSLVIDRR--DPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhc-cchhhHHHHHhhhhhceeccc--cCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHc
Confidence            459999988 55544 4444333 4556666  89999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhC
Q 040660          120 GFTNVVRAIENH  131 (487)
Q Consensus       120 g~~~~v~~Ll~~  131 (487)
                      |+.+++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            999888777755

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.51  E-value=7e-08  Score=63.89  Aligned_cols=38  Identities=37%  Similarity=0.932  Sum_probs=34.5

Q ss_pred             cccccccCCceE-EcCCCCccchHhhHHHHhc--cCCccccc
Q 040660          436 CVICLDAPVEGA-CVPCGHMAGCMSCLNEVKA--KKWGCPVC  474 (487)
Q Consensus       436 C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~--~~~~CP~C  474 (487)
                      |.||++...+++ +++|||.| |..|+.++..  ....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence            889999999999 89999999 9999999987  35589998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.44  E-value=1.2e-07  Score=63.89  Aligned_cols=43  Identities=42%  Similarity=0.970  Sum_probs=35.6

Q ss_pred             ccccccccCCceEEc-CCCCccchHhhHHHHhcc-CCccccccccc
Q 040660          435 SCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAK-KWGCPVCRANI  478 (487)
Q Consensus       435 ~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i  478 (487)
                      .|.||++.....+.+ +|||.| |..|+..+... ...||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998555555 599999 99999999876 66899999754

>smart00504 Ubox Modified RING finger domain

Probab=98.43  E-value=1.7e-07  Score=68.60  Aligned_cols=50  Identities=16%  Similarity=0.193  Sum_probs=43.9

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEe
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRL  484 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~  484 (487)
                      ..|+||.+...+++.++|||.| |..|+..+......||+|+.++.  .++++
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~   53 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLTHEDLIPN   53 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence            4699999999999999999999 99999999887778999999984  34444

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=8.9e-08  Score=87.01  Aligned_cols=46  Identities=43%  Similarity=1.071  Sum_probs=40.1

Q ss_pred             ccccccccccCCceEEcCCCCccchHhhHHH-HhccCC-cccccccccc
Q 040660          433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKW-GCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~~~~~-~CP~Cr~~i~  479 (487)
                      .+.|.||++.+..++.++|||.| |+.|+-. |..++. .||+||+.+.
T Consensus       215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~  262 (271)
T COG5574         215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVY  262 (271)
T ss_pred             ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhcc
Confidence            37899999999999999999999 9999999 555544 4999999774

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.40  E-value=1.4e-07  Score=93.15  Aligned_cols=50  Identities=28%  Similarity=0.588  Sum_probs=44.4

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      .+....|.||++.+.++++++|||.| |..|+..+......||+||..+..
T Consensus        23 Le~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        23 LDTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence            34557999999999999999999999 999999998877789999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.33  E-value=6.1e-07  Score=96.64  Aligned_cols=100  Identities=23%  Similarity=0.170  Sum_probs=70.1

Q ss_pred             HcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc
Q 040660           62 ELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE  141 (487)
Q Consensus        62 ~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d  141 (487)
                      ..++++|....-..|.|+||.|+..|..-++++|++.|+++|..|..|+||||.+...|+...+.+|+++|++.+  ..+
T Consensus       642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~--a~~  719 (785)
T KOG0521|consen  642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN--AFD  719 (785)
T ss_pred             cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc--ccC
Confidence            344444443224557778888888888888888888888888888888888888888888888888888888777  777


Q ss_pred             cCCCCHHHHHhhhcCCHHHHHHh
Q 040660          142 LYGPGFLELLAPQLLSRKVWVAV  164 (487)
Q Consensus       142 ~~G~t~L~~~a~~~~~~~~~~~L  164 (487)
                      ..|.++|+ +|....+.+++-++
T Consensus       720 ~~~~~~l~-~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  720 PDGKLPLD-IAMEAANADIVLLL  741 (785)
T ss_pred             ccCcchhh-HHhhhccccHHHHH
Confidence            77888887 55433555544443

>smart00184 RING Ring finger

Probab=98.32  E-value=4.3e-07  Score=59.01  Aligned_cols=38  Identities=37%  Similarity=0.974  Sum_probs=33.9

Q ss_pred             cccccccCCceEEcCCCCccchHhhHHHHhc-cCCccccc
Q 040660          436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKA-KKWGCPVC  474 (487)
Q Consensus       436 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~C  474 (487)
                      |.||++.....+.++|||.| |..|+..+.. ....||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence            78999999999999999999 9999999876 45579987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.31  E-value=3.3e-07  Score=60.51  Aligned_cols=30  Identities=37%  Similarity=0.934  Sum_probs=21.2

Q ss_pred             cccccccCCc----eEEcCCCCccchHhhHHHHhcc
Q 040660          436 CVICLDAPVE----GACVPCGHMAGCMSCLNEVKAK  467 (487)
Q Consensus       436 C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~  467 (487)
                      |+||++ +.+    ++.++|||.| |..|+++|...
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l~~~   34 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKLSKK   34 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EE-EHHHHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHHHhc
Confidence            899999 777    8999999999 99999999874

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.29  E-value=1.8e-06  Score=74.76  Aligned_cols=68  Identities=24%  Similarity=0.231  Sum_probs=46.7

Q ss_pred             CCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660           65 AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG-ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI  134 (487)
Q Consensus        65 a~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  134 (487)
                      .++|.+  |..|+|+||.|+..|..+.+.+|+.+| +++...|..|.+++.+|-+.|+.++|..|.+.-.+
T Consensus         3 ~~in~r--D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    3 GNINAR--DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCccch--hhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            456665  667777777777777777777777777 66677777777777777777777777777666444

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.28  E-value=8.1e-07  Score=95.72  Aligned_cols=98  Identities=30%  Similarity=0.410  Sum_probs=86.4

Q ss_pred             cCCCCCccC--CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc
Q 040660           29 DGAGLEWID--KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN  106 (487)
Q Consensus        29 ~g~~~~~~d--~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d  106 (487)
                      +++++|+.+  ..|.|+||.|+.. |..-++++|++.|+++|.+  |..|+||||.+...|+...+.+|+++|++.++.+
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~-~~~~~~e~ll~~ga~vn~~--d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~  719 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGT-GDSGAVELLLQNGADVNAL--DSKGRTPLHHATASGHTSIACLLLKRGADPNAFD  719 (785)
T ss_pred             chhhhccchhhhcccchhhhhhcc-chHHHHHHHHhcCCcchhh--hccCCCcchhhhhhcccchhhhhccccccccccC
Confidence            455555533  4689999999999 9999999999999999998  9999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHH
Q 040660          107 DDCQTPLEVARAKGFTNVVRAIE  129 (487)
Q Consensus       107 ~~g~TpL~~A~~~g~~~~v~~Ll  129 (487)
                      .+|.++|++|....+.+++-+|.
T Consensus       720 ~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  720 PDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             ccCcchhhHHhhhccccHHHHHh
Confidence            99999999998877777766554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.28  E-value=7e-07  Score=95.58  Aligned_cols=122  Identities=26%  Similarity=0.260  Sum_probs=66.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHH-HcCCCccccCCCCCCCcHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      .|++.||+++..++.-+++.+++. |......|.+|.-.+|+++.  ++++.+-+|+ -.|..++++  |..|+||||||
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~--lg~ewA~ll~~~~~~ai~i~--D~~G~tpL~wA  648 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA--LGYEWAFLPISADGVAIDIR--DRNGWTPLHWA  648 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh--cCCceeEEEEeecccccccc--cCCCCcccchH
Confidence            355666666666666666666654 44444555555555665333  3344444333 345555555  66666666666


Q ss_pred             HHhCCHHHHHHHHHcCCCccc------ccCCCCCHHHHHHHcCCHHHHHHHHhC
Q 040660           84 AKRGLERTVKLLLSYGANALV------LNDDCQTPLEVARAKGFTNVVRAIENH  131 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~------~d~~g~TpL~~A~~~g~~~~v~~Ll~~  131 (487)
                      +.+|+..++..|++.|++...      ..-.|.|+-.+|..+|+..+.-+|-+.
T Consensus       649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            666666666666655543322      222455666666666666655555443

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=4.4e-07  Score=90.11  Aligned_cols=53  Identities=28%  Similarity=0.773  Sum_probs=44.6

Q ss_pred             ccccccccccCCceEEcCCCCccchHhhHHHHhccC-----Cccccccccccc--eeEeee
Q 040660          433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK-----WGCPVCRANISQ--VIRLYA  486 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----~~CP~Cr~~i~~--~~~~y~  486 (487)
                      ...|+||++.+.-++.+.|||.| |..|+-+.+...     ..||+||..|.-  +..+|.
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~  245 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI  245 (513)
T ss_pred             CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence            46899999999999999999999 999999976643     379999999975  655553

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.22  E-value=4.3e-06  Score=79.71  Aligned_cols=75  Identities=27%  Similarity=0.326  Sum_probs=53.7

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660            8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR   86 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~   86 (487)
                      .--|..|++.|+++.|+.|++.|.++|.+|.....||.+|+.- ||.++|++|+++||-..--  ..+|... ||++.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLc-GHe~vvklLLenGAiC~rd--tf~G~RC-~YgaLn  111 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLC-GHEDVVKLLLENGAICSRD--TFDGDRC-HYGALN  111 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHc-CcHHHHHHHHHcCCccccc--ccCcchh-hhhhhh
Confidence            3457788888888888888888888888888888888888888 8888888888888754431  3344443 555554

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.22  E-value=2.9e-06  Score=73.58  Aligned_cols=74  Identities=22%  Similarity=0.170  Sum_probs=64.8

Q ss_pred             CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC-CCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc
Q 040660           30 GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG-AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN  106 (487)
Q Consensus        30 g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d  106 (487)
                      +.++|.+|..|+|+||.|+.. |..+.+.+|+.+| +.+...  |..|.+++.+|-+.|+.++|+.|.+...+-...+
T Consensus         2 e~~in~rD~fgWTalmcaa~e-g~~eavsyllgrg~a~vgv~--d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAME-GSNEAVSYLLGRGVAFVGVT--DESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             CCCccchhhhcchHHHHHhhh-cchhHHHHHhccCccccccc--ccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            467899999999999999999 9999999999999 888887  9999999999999999999999998755443333

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.21  E-value=4.6e-07  Score=82.85  Aligned_cols=49  Identities=29%  Similarity=0.558  Sum_probs=44.5

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      +.-..|-||-+....++.++|||.| |..|+++.....+.||+||.+...
T Consensus        23 Ds~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          23 DSMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             hhHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHHh
Confidence            4447899999999999999999999 999999999988999999988753

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.19  E-value=4.6e-07  Score=84.64  Aligned_cols=49  Identities=27%  Similarity=0.618  Sum_probs=45.0

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      +....|-||+|-+..++++||+|.| |..|++......+.||.|+.+++.
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence            4457899999999999999999999 999999999999999999998863

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.12  E-value=8.6e-06  Score=85.70  Aligned_cols=126  Identities=21%  Similarity=0.161  Sum_probs=101.5

Q ss_pred             CCCChHHHHHHhCCCcHHHHHHHHHcCC----CccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHH
Q 040660           38 KEGKTPLIAACMNPGLYDVAKTLIELGA----KVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPL  113 (487)
Q Consensus        38 ~~G~TpL~~A~~~~g~~~~v~~Ll~~ga----~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL  113 (487)
                      ..+.--...|+.. |+.-.|+..++...    ++|.+  |.-|+++|++|..+.+.+++++|++++.+.       ..+|
T Consensus        23 ~~~e~~fL~a~E~-gd~~~V~k~l~~~~~~~lninc~--d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdAL   92 (822)
T KOG3609|consen   23 NEGEKGFLLAHEN-GDVPLVAKALEYKAVSKLNINCR--DPLGRLALHIAIDNENLELQELLLDTSSEE-------GDAL   92 (822)
T ss_pred             chhhHHHHHHHHc-CChHHHHHHHHhccccccchhcc--ChHhhhceecccccccHHHHHHHhcCcccc-------chHH
Confidence            3445557789999 99999988887543    45555  999999999999999999999999987654       4589


Q ss_pred             HHHHHcCCHHHHHHHHhCCCccccc--------ccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCC
Q 040660          114 EVARAKGFTNVVRAIENHICIFSGW--------LRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTK  174 (487)
Q Consensus       114 ~~A~~~g~~~~v~~Ll~~ga~~~~~--------~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~  174 (487)
                      .+|+..|.+++|++|+.+-....+.        ..=..+.|||. +|+..++.||+++|+.+|+.+...
T Consensus        93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli-LAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM-LAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH-HHHHhcchHHHHHHHHcCCCCCCC
Confidence            9999999999999999886543210        11135789999 999999999999999999987543

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.10  E-value=1.1e-05  Score=76.91  Aligned_cols=85  Identities=29%  Similarity=0.298  Sum_probs=68.5

Q ss_pred             ChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC
Q 040660           41 KTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG  120 (487)
Q Consensus        41 ~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g  120 (487)
                      +--|.+||+. |..+.|+.|++.|.++|.+  |.....||.+|+..||.++|++||+.||-...-.-+|... |+++.+.
T Consensus        37 f~elceacR~-GD~d~v~~LVetgvnVN~v--D~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd  112 (516)
T KOG0511|consen   37 FGELCEACRA-GDVDRVRYLVETGVNVNAV--DRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND  112 (516)
T ss_pred             hHHHHHHhhc-ccHHHHHHHHHhCCCcchh--hcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH
Confidence            4558899999 9999999999999999998  9999999999999999999999999998665444566655 4444433


Q ss_pred             CHHHHHHHHhC
Q 040660          121 FTNVVRAIENH  131 (487)
Q Consensus       121 ~~~~v~~Ll~~  131 (487)
                        .|-++|+.+
T Consensus       113 --~IR~mllsy  121 (516)
T KOG0511|consen  113 --RIRRMLLSY  121 (516)
T ss_pred             --HHHHHHHHH
Confidence              344455544

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.10  E-value=2.6e-06  Score=63.97  Aligned_cols=40  Identities=30%  Similarity=0.798  Sum_probs=33.0

Q ss_pred             ccccccccC-------------CceEEcCCCCccchHhhHHHHhccCCcccccc
Q 040660          435 SCVICLDAP-------------VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCR  475 (487)
Q Consensus       435 ~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr  475 (487)
                      .|.||++..             ...+..+|||.| ...|+.+|......||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence            599999876             333456999999 9999999998888999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.08  E-value=4.8e-06  Score=89.36  Aligned_cols=130  Identities=14%  Similarity=-0.037  Sum_probs=103.1

Q ss_pred             CCccCCCCChHHHHHHhCCCcHHHHHHHHHc-CCCccccCCCCCCCcHHHHHHHhCCHHHHHHHH-HcCCCcccccCCCC
Q 040660           33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL-SYGANALVLNDDCQ  110 (487)
Q Consensus        33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll-~~ga~~~~~d~~g~  110 (487)
                      .......|+|.||+++.. +..-.++.+++- |......  |.+|...+|+ |..++.+++-+|+ -.|..++.+|..||
T Consensus       567 ~~~~~~r~~lllhL~a~~-lyawLie~~~e~~~~~~~el--d~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~  642 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAEL-LYAWLIEKVIEWAGSGDLEL--DRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGW  642 (975)
T ss_pred             cccCCCcchHHHHHHHHH-hHHHHHHHHhcccccCchhh--cccCCChhhH-hhhcCCceeEEEEeecccccccccCCCC
Confidence            344556799999999999 998899999886 6555555  7888889999 5556666655555 46788999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCccc----ccccccCCCCHHHHHhhhcCCHHHHHHhhcC
Q 040660          111 TPLEVARAKGFTNVVRAIENHICIFS----GWLRELYGPGFLELLAPQLLSRKVWVAVLPT  167 (487)
Q Consensus       111 TpL~~A~~~g~~~~v~~Ll~~ga~~~----~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~  167 (487)
                      ||||||+.+|+..++..|+..|++..    .....-.|.|+-. ++...++..+..+|-+.
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~-la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAAD-LARANGHKGIAGYLSEK  702 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhh-hhhcccccchHHHHhhh
Confidence            99999999999999999998887643    1133356889998 88888888888887655

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=1.6e-06  Score=90.54  Aligned_cols=52  Identities=25%  Similarity=0.626  Sum_probs=45.3

Q ss_pred             ccccccccccCCceEEcCCCCccchHhhHHHHhc-cCCcccccccccc--ceeEee
Q 040660          433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRANIS--QVIRLY  485 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~--~~~~~y  485 (487)
                      -..|++|.+++.++++..|||.| |+.|+..... +..+||.|...|.  .+.+||
T Consensus       643 ~LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~  697 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH  697 (698)
T ss_pred             ceeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence            36899999999999999999999 9999998644 3458999999995  688887

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.95  E-value=7.6e-06  Score=61.54  Aligned_cols=48  Identities=19%  Similarity=0.189  Sum_probs=39.1

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ  480 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  480 (487)
                      +...|+||.+...++|.+||||.| +..|+.+|... ...||+|++++..
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             cccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            347899999999999999999999 99999999988 6789999999874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=4.6e-06  Score=79.06  Aligned_cols=46  Identities=30%  Similarity=0.875  Sum_probs=38.7

Q ss_pred             cccccccccccC-------------CceEEcCCCCccchHhhHHHHhccCCccccccccc
Q 040660          432 ATSSCVICLDAP-------------VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI  478 (487)
Q Consensus       432 ~~~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i  478 (487)
                      +++.|.||||..             ..+.-+||||.+ ...|++.|..+...||+||.++
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence            346899999972             223568999999 9999999999888999999995

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.92  E-value=4.5e-06  Score=77.10  Aligned_cols=48  Identities=29%  Similarity=0.642  Sum_probs=39.3

Q ss_pred             CcccccccccccC---CceEEcCCCCccchHhhHHHHhc-cCCcccccccccc
Q 040660          431 DATSSCVICLDAP---VEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~  479 (487)
                      +...+|.|||+.+   ...+.+||.|.| ...|+.+|.. -+.+||+||.+|-
T Consensus       321 ~~GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         321 DKGVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             CCCceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence            3447999999865   335678999999 9999999987 4668999999874

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=4.7e-06  Score=77.19  Aligned_cols=47  Identities=28%  Similarity=0.580  Sum_probs=41.0

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccce
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQV  481 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~  481 (487)
                      .+|.||+....-++.++|+|.| |+.|++..-.. +..|++||.+|..-
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcc
Confidence            5899999999999999999999 99999986554 44699999999864

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=4.7e-06  Score=75.63  Aligned_cols=48  Identities=25%  Similarity=0.630  Sum_probs=42.9

Q ss_pred             ccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       435 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      .|..|.++...++++||.|.++|..|...+.    .||+|+.++...+.+|.
T Consensus       160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~----~CPiC~~~~~s~~~v~~  207 (207)
T KOG1100|consen  160 SCRKCGEREATVLLLPCRHLCLCGICDESLR----ICPICRSPKTSSVEVNF  207 (207)
T ss_pred             cceecCcCCceEEeecccceEecccccccCc----cCCCCcChhhceeeccC
Confidence            3999999999999999999999999988744    49999999998888773

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.80  E-value=8e-06  Score=78.07  Aligned_cols=47  Identities=34%  Similarity=0.805  Sum_probs=42.4

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhcc--CCccccccccccce
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANISQV  481 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~~~  481 (487)
                      ..|.||-|..+++...||||.. |..|+..|...  ...||.||-.|...
T Consensus       370 eLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  370 ELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccc
Confidence            6899999999999999999999 99999999854  34799999999864

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=1.5e-05  Score=76.86  Aligned_cols=46  Identities=30%  Similarity=0.798  Sum_probs=38.5

Q ss_pred             cccccccccCCce---EEcCCCCccchHhhHHHHhccCC-ccccccccccc
Q 040660          434 SSCVICLDAPVEG---ACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANISQ  480 (487)
Q Consensus       434 ~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~  480 (487)
                      ..|.||+|.+...   ..+||.|.| ...|+..|..+.+ .||+|++.|.+
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCC
Confidence            5899999977543   358999999 9999999998865 59999998754

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=1.8e-05  Score=74.65  Aligned_cols=49  Identities=24%  Similarity=0.723  Sum_probs=43.5

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccce
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV  481 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  481 (487)
                      ++..|+||+..+.+++|.||+|.- |+.|+.+..-+.+.|=.|+..|..+
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~~  469 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVIDV  469 (489)
T ss_pred             ccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeeeh
Confidence            457999999999999999999999 9999999877777899998887643

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=2.3e-05  Score=77.44  Aligned_cols=46  Identities=37%  Similarity=0.807  Sum_probs=39.6

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRA  476 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~  476 (487)
                      ..+...|.||++.+..++++||||.| |..|+..++...-.||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence            34557999999999999999999999 99999998863337999994

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=3.3e-05  Score=76.65  Aligned_cols=49  Identities=29%  Similarity=0.786  Sum_probs=44.7

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      ..+.+|+||+.....++.+||||.| |..|+.+...++..||.||.++.+
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence            4558999999999999999999999 999999988888899999998875

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.41  E-value=2.8e-05  Score=55.03  Aligned_cols=44  Identities=34%  Similarity=0.788  Sum_probs=24.0

Q ss_pred             ccccccccccCCceEE-cCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          433 TSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      ...|.+|.+....+|. ..|.|.| |..|+..-..  ..||+|+.+..
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~--~~CPvC~~Paw   51 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIG--SECPVCHTPAW   51 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B--TTTGGGGTT--TB-SSS--B-S
T ss_pred             hcCCcHHHHHhcCCceeccCccHH-HHHHhHHhcC--CCCCCcCChHH
Confidence            3689999999999985 6999999 9999977433  25999998873

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=5.8e-05  Score=79.67  Aligned_cols=46  Identities=33%  Similarity=0.770  Sum_probs=41.0

Q ss_pred             cccccccccccCCc-----eEEcCCCCccchHhhHHHHhccCCccccccccc
Q 040660          432 ATSSCVICLDAPVE-----GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI  478 (487)
Q Consensus       432 ~~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i  478 (487)
                      ....|.||+|....     +..+||||.| |..|++.|.++...||.||..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence            34689999998888     6889999999 9999999999888999999944

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.36  E-value=0.00016  Score=54.83  Aligned_cols=46  Identities=26%  Similarity=0.431  Sum_probs=33.9

Q ss_pred             ccccccccccCC-------------ceEEcCCCCccchHhhHHHHhcc---CCcccccccccc
Q 040660          433 TSSCVICLDAPV-------------EGACVPCGHMAGCMSCLNEVKAK---KWGCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~~~~-------------~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~  479 (487)
                      +..|.||+..+.             ..+.-.|+|.| ...|+.+|...   +..||+||++..
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence            346777765432             33445899999 99999999875   458999999764

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.33  E-value=0.00017  Score=67.91  Aligned_cols=52  Identities=33%  Similarity=0.828  Sum_probs=42.7

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc--CCcccccccccccee
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANISQVI  482 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~~~~  482 (487)
                      .++...|.||-+...-...+||+|.. |--|+-++...  .+.||+||..-..++
T Consensus        58 DEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~  111 (493)
T COG5236          58 DEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVV  111 (493)
T ss_pred             ccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEE
Confidence            44557999999998888889999999 99999987543  558999998876553

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.00011  Score=71.36  Aligned_cols=51  Identities=29%  Similarity=0.690  Sum_probs=41.8

Q ss_pred             CcccccccccccCCceE-----E---cCCCCccchHhhHHHHh--cc-----CCcccccccccccee
Q 040660          431 DATSSCVICLDAPVEGA-----C---VPCGHMAGCMSCLNEVK--AK-----KWGCPVCRANISQVI  482 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~-----~---~pCgH~~~C~~C~~~~~--~~-----~~~CP~Cr~~i~~~~  482 (487)
                      ..+.+|.||++.....+     +   .+|-|.| |..|+..|.  .+     .+.||.||.....++
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~  224 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN  224 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence            34579999999887776     5   6799999 999999998  44     458999999887654

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.27  E-value=9.6e-05  Score=50.61  Aligned_cols=43  Identities=33%  Similarity=0.890  Sum_probs=36.3

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      ..|..|.......+++||||.+ |..|-.....  ..||+|.++|.
T Consensus         8 ~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rY--ngCPfC~~~~~   50 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERY--NGCPFCGTPFE   50 (55)
T ss_pred             eeEEEcccccccccccccccee-eccccChhhc--cCCCCCCCccc
Confidence            5799999998888999999999 9999666543  36999999886

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.21  E-value=0.00018  Score=62.46  Aligned_cols=51  Identities=24%  Similarity=0.373  Sum_probs=43.9

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI  482 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~  482 (487)
                      .-...|.||..-...++...|||.| |..|+.+-.+....|-+|.+.....+
T Consensus       194 ~IPF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G~f  244 (259)
T COG5152         194 KIPFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYGRF  244 (259)
T ss_pred             CCceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhccce
Confidence            3457999999999999999999999 99999887777778999988765543

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=8.2e-05  Score=70.65  Aligned_cols=50  Identities=26%  Similarity=0.591  Sum_probs=40.2

Q ss_pred             CcccccccccccCCceEEc-CCCCccchHhhHHHHhcc-CCccccccccccce
Q 040660          431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAK-KWGCPVCRANISQV  481 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~  481 (487)
                      .....|.||++.......+ -|+|+| |+.|+..-.+. ...||.||+.....
T Consensus        41 ~~~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhhhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence            3457999999988766654 799999 99999886554 55899999987643

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.94  E-value=0.0016  Score=64.83  Aligned_cols=65  Identities=23%  Similarity=0.168  Sum_probs=52.9

Q ss_pred             cHHHHHHHHHcCCCccccC----CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHH
Q 040660           53 LYDVAKTLIELGAKVDAYR----PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVAR  117 (487)
Q Consensus        53 ~~~~v~~Ll~~ga~~~~~~----~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~  117 (487)
                      -.+.+++|.+++.+.|...    .+..-.|+||||+..|..++|.+||+.|+|+..+|..|+||.+++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3567888888887765431    2455678999999999999999999999999999999999998877

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00034  Score=65.01  Aligned_cols=49  Identities=24%  Similarity=0.457  Sum_probs=43.8

Q ss_pred             ccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660          433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI  482 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~  482 (487)
                      ...|-||..-+.++|...|||.| |..|+..-.++...|.+|.+.+..++
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~~  289 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGSF  289 (313)
T ss_pred             CccccccccccccchhhcCCcee-ehhhhccccccCCcceeccccccccc
Confidence            36799999999999999999999 99999887777778999999887654

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.87  E-value=0.00073  Score=62.12  Aligned_cols=46  Identities=26%  Similarity=0.858  Sum_probs=37.7

Q ss_pred             ccccccccccCCceEEc-CCCCccchHhhHHHHhc--cCCcccccccccc
Q 040660          433 TSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKA--KKWGCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~  479 (487)
                      ..+|++|-+.+..+... +|||.+ |+.|+..-..  .+-.||.|...+.
T Consensus       239 ~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  239 DTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             CceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCc
Confidence            36899999999999876 699999 9999887543  2347999988776

>smart00248 ANK ankyrin repeats

Probab=96.80  E-value=0.0022  Score=37.38  Aligned_cols=23  Identities=57%  Similarity=0.700  Sum_probs=9.4

Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcC
Q 040660           77 GTPLHHAAKRGLERTVKLLLSYG   99 (487)
Q Consensus        77 ~TpLh~Aa~~g~~~~v~~Ll~~g   99 (487)
                      .|+||+|+..++.+++++|++.|
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcC
Confidence            34444444444444444444433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=96.62  E-value=0.0011  Score=63.17  Aligned_cols=30  Identities=30%  Similarity=0.832  Sum_probs=25.6

Q ss_pred             CCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660          450 PCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ  480 (487)
Q Consensus       450 pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  480 (487)
                      +|||.| |..|+.+++.. ...||.|+..+..
T Consensus        25 ~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570        25 VCGHTL-CESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCcc-cHHHHHHHhcCCCCCCCCCCCccch
Confidence            799999 99999998755 4479999998864

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00248 ANK ankyrin repeats

Probab=96.58  E-value=0.0039  Score=36.28  Aligned_cols=27  Identities=44%  Similarity=0.697  Sum_probs=14.1

Q ss_pred             CChHHHHHHhCCCcHHHHHHHHHcCCCc
Q 040660           40 GKTPLIAACMNPGLYDVAKTLIELGAKV   67 (487)
Q Consensus        40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~   67 (487)
                      |.|+||+|+.. ++.++++.|++.+.++
T Consensus         2 ~~~~l~~~~~~-~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAEN-GNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHc-CCHHHHHHHHHcCCCC
Confidence            44555555555 5555555555554433

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.49  E-value=0.0011  Score=65.67  Aligned_cols=48  Identities=31%  Similarity=0.638  Sum_probs=37.4

Q ss_pred             CcccccccccccC-----------------CceEEcCCCCccchHhhHHHHhccC-Ccccccccccc
Q 040660          431 DATSSCVICLDAP-----------------VEGACVPCGHMAGCMSCLNEVKAKK-WGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~-----------------~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~  479 (487)
                      .....|+|||...                 ++-.+.||.|.| ...|+.+|.... -.||+||.++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCC
Confidence            3447899999622                 234557999999 999999999854 48999999874

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.32  E-value=0.0075  Score=60.19  Aligned_cols=71  Identities=21%  Similarity=0.190  Sum_probs=57.4

Q ss_pred             HHHHHHHHHcCCCCCc------cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHH
Q 040660           20 VEGIKALCRDGAGLEW------IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVK   93 (487)
Q Consensus        20 ~~~v~~Ll~~g~~~~~------~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~   93 (487)
                      ...|++|.+++.+.|.      .+..--|+||||+.. |..++|.+||+.|+|+.++  |..|.||..++.   +.++-.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~q-g~~k~v~~~Leeg~Dp~~k--d~~Grtpy~ls~---nkdVk~  477 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQ-GARKCVKYFLEEGCDPSTK--DGAGRTPYSLSA---NKDVKS  477 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhc-chHHHHHHHHHhcCCchhc--ccCCCCcccccc---cHHHHH
Confidence            6778888888776543      344456999999999 9999999999999999998  999999999987   455544


Q ss_pred             HHH
Q 040660           94 LLL   96 (487)
Q Consensus        94 ~Ll   96 (487)
                      .++
T Consensus       478 ~F~  480 (591)
T KOG2505|consen  478 IFI  480 (591)
T ss_pred             HHH
Confidence            444

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=96.18  E-value=0.0024  Score=61.30  Aligned_cols=45  Identities=33%  Similarity=0.848  Sum_probs=38.0

Q ss_pred             cccccccccccCCceEEcCC--CCccchHhhHHHHhccCCccccccccccce
Q 040660          432 ATSSCVICLDAPVEGACVPC--GHMAGCMSCLNEVKAKKWGCPVCRANISQV  481 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  481 (487)
                      +-.+|+||++....+++ .|  ||.. |..|-.++..   +||.||.+|..+
T Consensus        47 ~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~---~CP~Cr~~~g~~   93 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSN---KCPTCRLPIGNI   93 (299)
T ss_pred             hhccCchhhccCcccce-ecCCCcEe-hhhhhhhhcc---cCCccccccccH
Confidence            44789999999988876 56  7999 9999987766   799999999854

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.05  E-value=0.0024  Score=64.40  Aligned_cols=50  Identities=34%  Similarity=0.758  Sum_probs=44.2

Q ss_pred             CcccccccccccCCceEE-cCCCCccchHhhHHHHhccCCccccccccccce
Q 040660          431 DATSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV  481 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  481 (487)
                      ++...|.+|+....+++. +.|||.| |..|+..+.+....||.|+..+...
T Consensus        19 ~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~   69 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQA   69 (391)
T ss_pred             cccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchh
Confidence            455789999999999998 4999999 9999999998888999999887654

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.99  E-value=0.0045  Score=41.59  Aligned_cols=42  Identities=24%  Similarity=0.670  Sum_probs=20.4

Q ss_pred             cccccccC--CceEEc--CCCCccchHhhHHHHhc-cCCccccccccc
Q 040660          436 CVICLDAP--VEGACV--PCGHMAGCMSCLNEVKA-KKWGCPVCRANI  478 (487)
Q Consensus       436 C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i  478 (487)
                      |++|.+..  .+..+.  +||+.+ |..|-.++.. ....||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence            55666544  222333  678888 9999999986 477999999874

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=95.94  E-value=0.0019  Score=67.35  Aligned_cols=50  Identities=24%  Similarity=0.423  Sum_probs=40.8

Q ss_pred             cccccccccCCceEE---cCCCCccchHhhHHHHhccCCccccccccccceeEe
Q 040660          434 SSCVICLDAPVEGAC---VPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRL  484 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~  484 (487)
                      ..|.+|+....+...   .+|+|.| |..|+..|.+....||+||..+.+++.+
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V~  176 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKVL  176 (1134)
T ss_pred             hhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeeee
Confidence            579999876544433   5999999 9999999998877899999999877644

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=95.86  E-value=0.0079  Score=51.01  Aligned_cols=51  Identities=29%  Similarity=0.842  Sum_probs=36.8

Q ss_pred             cccccccccCCceEEcCCC-Cccch-----------HhhHHHHhcc-------------------------------CCc
Q 040660          434 SSCVICLDAPVEGACVPCG-HMAGC-----------MSCLNEVKAK-------------------------------KWG  470 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCg-H~~~C-----------~~C~~~~~~~-------------------------------~~~  470 (487)
                      ..|+||||.|-++|+|-|- |.-.|           ..|+.+.++.                               +..
T Consensus         3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~   82 (162)
T PF07800_consen    3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPELA   82 (162)
T ss_pred             ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccccc
Confidence            4799999999999998765 33323           4577766431                               225


Q ss_pred             cccccccccceeEe
Q 040660          471 CPVCRANISQVIRL  484 (487)
Q Consensus       471 CP~Cr~~i~~~~~~  484 (487)
                      ||+||..|...+.+
T Consensus        83 CPLCRG~V~GWtvv   96 (162)
T PF07800_consen   83 CPLCRGEVKGWTVV   96 (162)
T ss_pred             CccccCceeceEEc
Confidence            99999999877654

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=95.81  E-value=0.0049  Score=58.20  Aligned_cols=48  Identities=27%  Similarity=0.711  Sum_probs=36.1

Q ss_pred             CcccccccccccC----CceEEcCCCCccchHhhHHHHhcc-CCcccccccccc
Q 040660          431 DATSSCVICLDAP----VEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~  479 (487)
                      +++..|+.|++..    .+..--|||..+ |..|...++.. .+.||.||+..+
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhcc
Confidence            4445699999854    222224788888 99999998775 668999999875

>PF04641 Rtf2: Rtf2 RING-finger

Probab=95.73  E-value=0.011  Score=56.38  Aligned_cols=52  Identities=27%  Similarity=0.443  Sum_probs=40.4

Q ss_pred             CcccccccccccC----CceEEcCCCCccchHhhHHHHhccCCccccccccccc--eeEe
Q 040660          431 DATSSCVICLDAP----VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ--VIRL  484 (487)
Q Consensus       431 ~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~--~~~~  484 (487)
                      .....|+|+....    .-+++.||||.| +..++..+. ....||+|-.++..  +|.|
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k-~~~~Cp~c~~~f~~~DiI~L  168 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELK-KSKKCPVCGKPFTEEDIIPL  168 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhc-ccccccccCCccccCCEEEe
Confidence            4558999998655    344456999999 999999996 45579999999873  5554

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.0065  Score=55.73  Aligned_cols=46  Identities=22%  Similarity=0.475  Sum_probs=35.9

Q ss_pred             ccccccccccCCc----------eEEcCCCCccchHhhHHHHhcc--CCcccccccccc
Q 040660          433 TSSCVICLDAPVE----------GACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~~~~~----------~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~  479 (487)
                      ...|.||-...-.          ..-+.|+|.| ...|++-|..-  +..||.|++.|+
T Consensus       224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             cchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhh
Confidence            3589999765432          3347999999 99999999764  457999998875

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.47  E-value=0.068  Score=48.26  Aligned_cols=115  Identities=16%  Similarity=0.070  Sum_probs=80.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC----CCccccCCCCCCCcHHHHHHH
Q 040660           10 LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG----AKVDAYRPGRHGGTPLHHAAK   85 (487)
Q Consensus        10 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g----a~~~~~~~d~~g~TpLh~Aa~   85 (487)
                      .|--|+..-+++.+..++...-       +-.++|-++..+ +..+++-+|+..-    .|+-.   -..+..-+-|+..
T Consensus       156 sledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~-~K~dva~~lls~f~ft~~dv~~---~~~~~ydieY~LS  224 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGN-AKEDVALYLLSKFNFTKQDVAS---MEKELYDIEYLLS  224 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcc-cHHHHHHHHHhhcceecchhhh---cCcchhhHHHHHh
Confidence            3556777777777666654321       235788888887 8888888888651    22222   1224445566554


Q ss_pred             h--CCHHHHHHHHHcC-CCccc---ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Q 040660           86 R--GLERTVKLLLSYG-ANALV---LNDDCQTPLEVARAKGFTNVVRAIENHICIF  135 (487)
Q Consensus        86 ~--g~~~~v~~Ll~~g-a~~~~---~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~  135 (487)
                      .  .+..+++.+|++| +++|.   +-+.|.|.|.-|..+++.+++.+|+++||-.
T Consensus       225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            3  3567899999999 67765   4568999999999999999999999999853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.46  E-value=0.0099  Score=53.81  Aligned_cols=48  Identities=19%  Similarity=0.341  Sum_probs=40.9

Q ss_pred             cccccccccccCCce----EEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          432 ATSSCVICLDAPVEG----ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      ....|+||.+...+.    ++-||||.+ |++|.+++......||+|-.+...
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd  271 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD  271 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence            458999999977654    346999999 999999999888899999998863

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.40  E-value=0.013  Score=40.04  Aligned_cols=40  Identities=25%  Similarity=0.618  Sum_probs=31.4

Q ss_pred             ccccccc--cCCceEEcCCC-----CccchHhhHHHHhccC--Ccccccc
Q 040660          435 SCVICLD--APVEGACVPCG-----HMAGCMSCLNEVKAKK--WGCPVCR  475 (487)
Q Consensus       435 ~C~iC~~--~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CP~Cr  475 (487)
                      .|.||++  ...++...||.     |.+ -..|+.+|...+  ..||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence            3889996  55677778996     556 999999998654  3799995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.40  E-value=0.12  Score=46.74  Aligned_cols=116  Identities=15%  Similarity=0.048  Sum_probs=72.0

Q ss_pred             HHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc----CCCCCHHHHHHH-
Q 040660           44 LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN----DDCQTPLEVARA-  118 (487)
Q Consensus        44 L~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d----~~g~TpL~~A~~-  118 (487)
                      |--|+.. .+++-+.-++...         ..-.++|-+|...+..+++-+|+..- +....|    ..+.--+.++.. 
T Consensus       157 ledAV~A-sN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  157 LEDAVKA-SNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSE  225 (284)
T ss_pred             HHHHHhh-cCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhh
Confidence            4456666 6666666665432         23446788888777788888887631 111111    112223444443 


Q ss_pred             -cCCHHHHHHHHhCC-Cccccc-ccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660          119 -KGFTNVVRAIENHI-CIFSGW-LRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN  171 (487)
Q Consensus       119 -~g~~~~v~~Ll~~g-a~~~~~-~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~  171 (487)
                       .....++++.+++| ++++.. .+-..|.|.|. -|...++.|++.+|+.+|+..
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD-NA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD-NAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHH-hHHhcCcHHHHHHHHHcCccc
Confidence             23567888888888 444432 33367888888 888888888888888888854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.24  E-value=0.014  Score=38.50  Aligned_cols=47  Identities=23%  Similarity=0.549  Sum_probs=27.2

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI  482 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~  482 (487)
                      .-|.-|+-....-  +.|.--+.|..|+..|...+..||+|..++...+
T Consensus         3 ~nCKsCWf~~k~L--i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki   49 (50)
T PF03854_consen    3 YNCKSCWFANKGL--IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI   49 (50)
T ss_dssp             ----SS-S--SSE--EE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred             ccChhhhhcCCCe--eeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence            4688898776654  5688444599999999999889999999876544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=0.011  Score=56.07  Aligned_cols=52  Identities=23%  Similarity=0.519  Sum_probs=41.7

Q ss_pred             ccccccccccCCceEEc-CCCCccchHhhHHHHhccCCccccccccc--cceeEee
Q 040660          433 TSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANI--SQVIRLY  485 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i--~~~~~~y  485 (487)
                      ...|+||+....++..+ --|..| |+.|+-....+.+.||+-..++  +..+|+|
T Consensus       300 ~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~  354 (357)
T KOG0826|consen  300 REVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF  354 (357)
T ss_pred             cccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence            35899999988777654 459988 9999999888888999976665  4677776

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.11  E-value=0.013  Score=57.92  Aligned_cols=42  Identities=31%  Similarity=0.668  Sum_probs=33.2

Q ss_pred             cccccccccCCceE----EcCCCCccchHhhHHHHhccCCccccccccc
Q 040660          434 SSCVICLDAPVEGA----CVPCGHMAGCMSCLNEVKAKKWGCPVCRANI  478 (487)
Q Consensus       434 ~~C~iC~~~~~~~~----~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i  478 (487)
                      ..|+||+|+.-.-+    -+.|.|.| --.|+.+|+..  .||+||-.-
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsf-h~~cl~~w~~~--scpvcR~~q  221 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSF-HCSCLMKWWDS--SCPVCRYCQ  221 (493)
T ss_pred             CCcchhHhhcCccccceeeeeccccc-chHHHhhcccC--cChhhhhhc
Confidence            47999999874433    36999999 88899999875  599998543

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=95.06  E-value=0.012  Score=48.13  Aligned_cols=46  Identities=26%  Similarity=0.615  Sum_probs=39.2

Q ss_pred             cccccccccCCceEEc----CCCCccchHhhHHHHhcc---CCccccccccccc
Q 040660          434 SSCVICLDAPVEGACV----PCGHMAGCMSCLNEVKAK---KWGCPVCRANISQ  480 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~~  480 (487)
                      .+|.||.|...+.-|+    =||-.. |..|-..+|+.   .+.||+|+..+..
T Consensus        81 YeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   81 YECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             eeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCcccccccc
Confidence            7999999998888886    599888 99998887764   6689999998864

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.99  E-value=0.0056  Score=58.18  Aligned_cols=53  Identities=23%  Similarity=0.503  Sum_probs=44.3

Q ss_pred             ccccccccccCCceEE-cCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          433 TSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      ...|.+|..-..++.. .-|-|.| |..|+.+.......||.|...|.+...+.+
T Consensus        15 ~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~pl~n   68 (331)
T KOG2660|consen   15 HITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHPLLN   68 (331)
T ss_pred             ceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCcccccc
Confidence            3689999998888775 4799999 999999988777899999999988765443

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.95  E-value=0.18  Score=46.88  Aligned_cols=30  Identities=27%  Similarity=0.678  Sum_probs=27.2

Q ss_pred             cccccccccCCceEEcCCC----CccchHhhHHHH
Q 040660          434 SSCVICLDAPVEGACVPCG----HMAGCMSCLNEV  464 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~  464 (487)
                      ..|.+|.|+..+..|+.|-    |.| |+.|.+.-
T Consensus       269 LcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSRes  302 (352)
T KOG3579|consen  269 LCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRES  302 (352)
T ss_pred             eeehhhhhhhccCceeecCCCcccce-ecccCHHH
Confidence            5899999999999999995    999 99998774

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=94.81  E-value=0.024  Score=53.09  Aligned_cols=45  Identities=27%  Similarity=0.747  Sum_probs=30.5

Q ss_pred             ccccccccccCCceE--EcCCCCccchHhhHHHHhccCCccccccccccce
Q 040660          433 TSSCVICLDAPVEGA--CVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV  481 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~--~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  481 (487)
                      ..-|.-| |.+....  ++||.|.| |.+|+..-..  +.||.|-..|.++
T Consensus        90 VHfCd~C-d~PI~IYGRmIPCkHvF-Cl~CAr~~~d--K~Cp~C~d~VqrI  136 (389)
T KOG2932|consen   90 VHFCDRC-DFPIAIYGRMIPCKHVF-CLECARSDSD--KICPLCDDRVQRI  136 (389)
T ss_pred             eEeeccc-CCcceeeecccccchhh-hhhhhhcCcc--ccCcCcccHHHHH
Confidence            3456666 4433322  47999999 9999877542  3699998777544

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=94.78  E-value=0.013  Score=62.87  Aligned_cols=44  Identities=32%  Similarity=0.690  Sum_probs=38.0

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhcc--CCcccccccccc
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANIS  479 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~  479 (487)
                      ..|.+|++ ...++.++|||.+ |.+|.......  ...||+||..+.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHH
Confidence            68999999 8888899999999 99999987654  336999998875

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.74  E-value=0.011  Score=59.11  Aligned_cols=48  Identities=27%  Similarity=0.636  Sum_probs=39.2

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhc-----cCCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA-----KKWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-----~~~~CP~Cr~~i~  479 (487)
                      .+..+|.+|-|...+.+...|.|.| |..|+.....     ....||.|.....
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~Ls  586 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGLS  586 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCcccccccc
Confidence            4457999999999999999999999 9999977543     2347999987653

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=94.09  E-value=0.044  Score=38.70  Aligned_cols=40  Identities=23%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             ccccccccccCCceEE-cCCCCccchHhhHHHHhcc--CCcccc
Q 040660          433 TSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAK--KWGCPV  473 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~--~~~CP~  473 (487)
                      ...|+|.+..+.++|. ..|||.| ..+.+..+...  ...||+
T Consensus        11 ~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence            3689999999999987 5999999 99999998843  447998

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.80  E-value=0.028  Score=60.28  Aligned_cols=49  Identities=27%  Similarity=0.642  Sum_probs=36.8

Q ss_pred             CcccccccccccC-------CceEEcCCCCccchHhhHHHHhcc--CCccccccccccc
Q 040660          431 DATSSCVICLDAP-------VEGACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~-------~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~~  480 (487)
                      +...+|.||+...       ..-.+-.|.|-| ...|+-+|-..  +..||+||..|+.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCcccccccc
Confidence            3457999999632       233345799999 99999999876  3479999988763

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.76  E-value=0.23  Score=43.59  Aligned_cols=138  Identities=20%  Similarity=0.114  Sum_probs=88.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660            9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL   88 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~   88 (487)
                      =.|..|+..+.+.+++.+-+...+-   -...++..-.||+. .+.|+|+|+-   -++...    +-.+-+-.|....+
T Consensus        48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~-qkydiV~WI~---qnL~i~----~~~~iFdIA~~~kD  116 (192)
T PF03158_consen   48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEE-QKYDIVKWIG---QNLHIY----NPEDIFDIAFAKKD  116 (192)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHH-ccccHHHHHh---hccCCC----Cchhhhhhhhhccc
Confidence            3567788999999988876653221   13456778899999 8899999993   333332    22345666777766


Q ss_pred             HHHH----HHHHHcCCCcccccC--CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           89 ERTV----KLLLSYGANALVLND--DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        89 ~~~v----~~Ll~~ga~~~~~d~--~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      .++.    .+++++...-.-.|.  --..-|.+|+..|-...|.-.+++|.+++  .      ++|. .|+..++.+++.
T Consensus       117 lsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~--~------~vls-~Av~ynhRkIL~  187 (192)
T PF03158_consen  117 LSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--I------IVLS-QAVKYNHRKILD  187 (192)
T ss_pred             hhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--H------HHHH-HHHHhhHHHHHH
Confidence            6542    223333211100000  01134678888888888888888888876  2      6777 788888888888


Q ss_pred             Hhhc
Q 040660          163 AVLP  166 (487)
Q Consensus       163 ~Ll~  166 (487)
                      +++.
T Consensus       188 yfi~  191 (192)
T PF03158_consen  188 YFIR  191 (192)
T ss_pred             Hhhc
Confidence            7764

These proteins may be involved in promoting survival of infected macrophages [].

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.67  E-value=0.02  Score=42.49  Aligned_cols=45  Identities=31%  Similarity=0.634  Sum_probs=22.1

Q ss_pred             cccccccccCC------ceEEc--CCCCccchHhhHHHHhcc-----------CCcccccccccc
Q 040660          434 SSCVICLDAPV------EGACV--PCGHMAGCMSCLNEVKAK-----------KWGCPVCRANIS  479 (487)
Q Consensus       434 ~~C~iC~~~~~------~~~~~--pCgH~~~C~~C~~~~~~~-----------~~~CP~Cr~~i~  479 (487)
                      .+|.||++..-      +.+.-  .|++.| ...|+..|...           .+.||.|+.+|.
T Consensus         3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            57999997543      12222  788888 99999999542           125999999885

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=93.66  E-value=0.058  Score=39.91  Aligned_cols=29  Identities=24%  Similarity=0.378  Sum_probs=26.5

Q ss_pred             CCCCccchHhhHHHHhccCCcccccccccc
Q 040660          450 PCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       450 pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      -|.|.| -.-|+.+|...+..||+||+...
T Consensus        53 ~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          53 VCNHAF-HDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             ecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence            699999 99999999998889999998754

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.63  E-value=0.036  Score=54.23  Aligned_cols=31  Identities=32%  Similarity=0.850  Sum_probs=26.0

Q ss_pred             ccccccccccCCc---eEEcCCCCccchHhhHHHH
Q 040660          433 TSSCVICLDAPVE---GACVPCGHMAGCMSCLNEV  464 (487)
Q Consensus       433 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~  464 (487)
                      ...|.||++...-   ..++||+|.| |..|+...
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY  217 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDY  217 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHH-HHHHHHHH
Confidence            4789999997754   5678999999 99998874

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=92.70  E-value=0.082  Score=43.92  Aligned_cols=34  Identities=29%  Similarity=0.542  Sum_probs=27.5

Q ss_pred             ccccccccccCCc---eEEcCCC------CccchHhhHHHHhcc
Q 040660          433 TSSCVICLDAPVE---GACVPCG------HMAGCMSCLNEVKAK  467 (487)
Q Consensus       433 ~~~C~iC~~~~~~---~~~~pCg------H~~~C~~C~~~~~~~  467 (487)
                      ..+|.||+++..+   ++.++||      |+| |..|.++|.+.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw~~~   68 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRWRRE   68 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHHHhh
Confidence            3689999998766   5567898      777 99999999543

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=91.87  E-value=0.16  Score=47.97  Aligned_cols=52  Identities=6%  Similarity=-0.127  Sum_probs=42.5

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEe
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRL  484 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~  484 (487)
                      ....+|.+|-+.....+..+|+|+..|.+|+.  ..-.+.||+|..-+...++|
T Consensus       341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             hhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeec
Confidence            45579999999999999999999999999998  33456899997765555555

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=91.81  E-value=0.09  Score=58.88  Aligned_cols=50  Identities=28%  Similarity=0.874  Sum_probs=38.3

Q ss_pred             CcccccccccccC---CceEEcCCCCccchHhhHHHHhccCC----------ccccccccccce
Q 040660          431 DATSSCVICLDAP---VEGACVPCGHMAGCMSCLNEVKAKKW----------GCPVCRANISQV  481 (487)
Q Consensus       431 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~----------~CP~Cr~~i~~~  481 (487)
                      +.+..|+||+...   ...+.+-|+|+| ...|.+++..+++          .||+|..+|..+
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence            3346899999644   344568999999 9999999876543          499999998743

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=91.69  E-value=0.059  Score=48.66  Aligned_cols=46  Identities=24%  Similarity=0.609  Sum_probs=33.7

Q ss_pred             cccccccccc-cC--CceEEc--C-CCCccchHhhHHHHhccCC-ccc--cccccc
Q 040660          432 ATSSCVICLD-AP--VEGACV--P-CGHMAGCMSCLNEVKAKKW-GCP--VCRANI  478 (487)
Q Consensus       432 ~~~~C~iC~~-~~--~~~~~~--p-CgH~~~C~~C~~~~~~~~~-~CP--~Cr~~i  478 (487)
                      ....|+||.. +.  .+..++  | |-|.. |..|..++....+ .||  .|.+-.
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~kIL   63 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGKIL   63 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHHHH
Confidence            3468999984 22  344443  6 99999 9999999987755 799  886543

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.01  E-value=0.24  Score=48.84  Aligned_cols=28  Identities=39%  Similarity=0.905  Sum_probs=20.2

Q ss_pred             CCCccchHhhHHHHhc-------------cCCcccccccccc
Q 040660          451 CGHMAGCMSCLNEVKA-------------KKWGCPVCRANIS  479 (487)
Q Consensus       451 CgH~~~C~~C~~~~~~-------------~~~~CP~Cr~~i~  479 (487)
                      |+-+. |.+|+-+|..             .+..||.||+.++
T Consensus       311 CRPmW-C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMW-CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchH-HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            33444 9999998832             2447999999876

They are purported to be transmembrane protein-precursors but their function is unknown.

>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ]

Probab=90.95  E-value=0.067  Score=52.33  Aligned_cols=53  Identities=25%  Similarity=0.570  Sum_probs=0.0

Q ss_pred             ccccccccc-------------------cCCceEEcCCCCccchHhhHHHHhcc---------CCccccccccccc---e
Q 040660          433 TSSCVICLD-------------------APVEGACVPCGHMAGCMSCLNEVKAK---------KWGCPVCRANISQ---V  481 (487)
Q Consensus       433 ~~~C~iC~~-------------------~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~~---~  481 (487)
                      ..+|++|+.                   .+.+.+|.||||++ =...++-|.+-         ...||.|-.++..   +
T Consensus       328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~  406 (416)
T PF04710_consen  328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY  406 (416)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence            579999985                   23455678999997 77777777542         2369999999973   6


Q ss_pred             eEeee
Q 040660          482 IRLYA  486 (487)
Q Consensus       482 ~~~y~  486 (487)
                      +|+++
T Consensus       407 vrLiF  411 (416)
T PF04710_consen  407 VRLIF  411 (416)
T ss_dssp             -----
T ss_pred             eEEEE
Confidence            77765

; PDB: 3EGB_B 3EGA_A.

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.61  E-value=0.13  Score=48.06  Aligned_cols=42  Identities=24%  Similarity=0.604  Sum_probs=34.8

Q ss_pred             cccccccccCCceEEc-CCCCccchHhhHHHHhc-cCCccccccc
Q 040660          434 SSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKA-KKWGCPVCRA  476 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~-~~~~CP~Cr~  476 (487)
                      ..|+.|....++++-+ -|+|.| |.+|+...+. ...+||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence            6899999988888877 578999 9999997544 3458999976

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.23  E-value=0.85  Score=34.34  Aligned_cols=48  Identities=23%  Similarity=0.113  Sum_probs=31.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHc
Q 040660            8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL   63 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~   63 (487)
                      ...|..|+..|+.|+++.+++.+ .++      ...|..|+.. .+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~-H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKS-HNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHH-hhHHHHHHHHHh
Confidence            34567777777777777777654 221      3457777777 777777777765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]

Probab=88.59  E-value=0.54  Score=44.47  Aligned_cols=47  Identities=23%  Similarity=0.576  Sum_probs=30.9

Q ss_pred             ccccccccccc-------------------CCceEEcCCCCccchHhhHHHHhcc---------CCcccccccccc
Q 040660          432 ATSSCVICLDA-------------------PVEGACVPCGHMAGCMSCLNEVKAK---------KWGCPVCRANIS  479 (487)
Q Consensus       432 ~~~~C~iC~~~-------------------~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~  479 (487)
                      .+.+|++|+..                   +.+-.|-||||++ -..=..-|.+-         ...||+|-..+.
T Consensus       340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~-sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~  414 (429)
T KOG3842|consen  340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC-SEKTVKYWSQIPLPHGTHAFHAACPFCATQLA  414 (429)
T ss_pred             ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc-chhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence            45799999863                   2334457999985 44444445431         336999988875

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=88.55  E-value=0.24  Score=38.65  Aligned_cols=27  Identities=19%  Similarity=0.471  Sum_probs=25.0

Q ss_pred             CCCCccchHhhHHHHhccCCcccccccc
Q 040660          450 PCGHMAGCMSCLNEVKAKKWGCPVCRAN  477 (487)
Q Consensus       450 pCgH~~~C~~C~~~~~~~~~~CP~Cr~~  477 (487)
                      -|.|.| -+-|+.+|.+.+..||+|.+.
T Consensus        80 ~CNHaF-H~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAF-HFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             ecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence            799999 999999999999999999775

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.68  E-value=0.39  Score=47.15  Aligned_cols=53  Identities=21%  Similarity=0.452  Sum_probs=38.5

Q ss_pred             cccccccccc---CCceEEcCCCCccchHhhHHHHhccC---Ccccccccccc--ceeEeee
Q 040660          433 TSSCVICLDA---PVEGACVPCGHMAGCMSCLNEVKAKK---WGCPVCRANIS--QVIRLYA  486 (487)
Q Consensus       433 ~~~C~iC~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~--~~~~~y~  486 (487)
                      ...|+|=.+.   .-.|+.+.|||.. |..-+.++.+..   -+||+|-....  ...+||+
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F  394 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF  394 (394)
T ss_pred             eeecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence            3688884431   2346678999999 999999998763   38999976653  5667764

>PHA02862 5L protein; Provisional

Probab=86.50  E-value=0.67  Score=38.83  Aligned_cols=45  Identities=24%  Similarity=0.441  Sum_probs=34.4

Q ss_pred             cccccccccCCceEEcCCCC----ccchHhhHHHHhcc--CCcccccccccc
Q 040660          434 SSCVICLDAPVEGACVPCGH----MAGCMSCLNEVKAK--KWGCPVCRANIS  479 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH----~~~C~~C~~~~~~~--~~~CP~Cr~~i~  479 (487)
                      ..|-||++...+. .-||..    .++..+|+.+|...  +..|++|+.+..
T Consensus         3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            4799999986554 478885    34589999999865  337999998764

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=86.44  E-value=1.2  Score=33.57  Aligned_cols=46  Identities=15%  Similarity=0.054  Sum_probs=22.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhC
Q 040660           79 PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH  131 (487)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  131 (487)
                      -|.+|+..|+.|+++.+++.+ .++      ...|..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            345555555555555555432 111      2345555555555555555543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=86.30  E-value=0.69  Score=39.58  Aligned_cols=47  Identities=21%  Similarity=0.379  Sum_probs=34.8

Q ss_pred             cccccccccccCCceEEcCCCCc----cchHhhHHHHhccC--Ccccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHM----AGCMSCLNEVKAKK--WGCPVCRANIS  479 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~~~~~--~~CP~Cr~~i~  479 (487)
                      .+..|-||++.... ...||...    ++..+|+++|...+  ..|++|+.+..
T Consensus         7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            34689999988653 34688752    34889999998763  37999998774

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=84.72  E-value=0.31  Score=35.81  Aligned_cols=29  Identities=24%  Similarity=0.512  Sum_probs=23.7

Q ss_pred             CCCCccchHhhHHHHhcc---CCcccccccccc
Q 040660          450 PCGHMAGCMSCLNEVKAK---KWGCPVCRANIS  479 (487)
Q Consensus       450 pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~  479 (487)
                      -|.|.| -.-|+.+|...   ...||+||+...
T Consensus        50 ~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   50 YCLHAF-HAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             HHHHHH-HHHHHHHHhcCccccccCCcchheeE
Confidence            699999 99999998754   347999998653

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=84.00  E-value=0.41  Score=38.68  Aligned_cols=31  Identities=26%  Similarity=0.745  Sum_probs=24.1

Q ss_pred             cccccccccccCCceEE--cCCCCccchHhhHHH
Q 040660          432 ATSSCVICLDAPVEGAC--VPCGHMAGCMSCLNE  463 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~--~pCgH~~~C~~C~~~  463 (487)
                      +...|.+|.....+.+|  .||||.+ .+.|+.+
T Consensus        77 ~~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~r  109 (109)
T PF10367_consen   77 ESTKCSVCGKPLGNSVFVVFPCGHVV-HYSCIKR  109 (109)
T ss_pred             CCCCccCcCCcCCCceEEEeCCCeEE-ecccccC
Confidence            34579999988766554  5999999 9999753

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=83.43  E-value=0.38  Score=46.87  Aligned_cols=46  Identities=28%  Similarity=0.658  Sum_probs=35.0

Q ss_pred             cccccccccc----CCceEEcCCCCccchHhhHHHHhccC--Ccccccccccc
Q 040660          433 TSSCVICLDA----PVEGACVPCGHMAGCMSCLNEVKAKK--WGCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~  479 (487)
                      ..-|..|-+.    +.+---+||.|.| ...|+..+..++  ..||-||+-+.
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS  416 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS  416 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence            3579999874    3444458999999 999999987653  37999996554

>PHA03096 p28-like protein; Provisional

Probab=83.24  E-value=0.68  Score=44.37  Aligned_cols=44  Identities=18%  Similarity=0.202  Sum_probs=31.0

Q ss_pred             cccccccccCCc--------eEEcCCCCccchHhhHHHHhcc------CCccccccccc
Q 040660          434 SSCVICLDAPVE--------GACVPCGHMAGCMSCLNEVKAK------KWGCPVCRANI  478 (487)
Q Consensus       434 ~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i  478 (487)
                      ..|.||++....        ..+-.|-|.| |..|+..|...      .+.||.|+..+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHHhhhhcccCccccchhhHH
Confidence            479999986532        3345899999 99999998764      22466665544

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=83.19  E-value=0.29  Score=46.26  Aligned_cols=49  Identities=12%  Similarity=0.188  Sum_probs=40.0

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhcc-CCcccccccccccee
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQVI  482 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~~  482 (487)
                      ..|.+|++.......++|+|.++|..|+...+.+ ...|++|...+.+..
T Consensus       137 i~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~  186 (394)
T KOG2113|consen  137 IKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAG  186 (394)
T ss_pred             cchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhh
Confidence            6899999999999999999999999998887554 335999976655443

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.11  E-value=0.95  Score=44.03  Aligned_cols=33  Identities=27%  Similarity=0.737  Sum_probs=26.8

Q ss_pred             ceEEcCCCCccchHhhHHHHhccC-Cccccccccc
Q 040660          445 EGACVPCGHMAGCMSCLNEVKAKK-WGCPVCRANI  478 (487)
Q Consensus       445 ~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i  478 (487)
                      .+..+.|||.+ |..|+..+.... ..||.||.+.
T Consensus        21 ~p~~l~c~h~~-c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen   21 IPRVLKCGHTI-CQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CCcccccCcee-hHhHHHHHhcCceeeccCCCCcc
Confidence            34446699999 999999998764 3799999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	487
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-15
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-13
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-12
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-12
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-08
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		4e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		4e-08
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		7e-08
3so8_A	162	Crystal Structure Of Ankra Length = 162		8e-08
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-08
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-08
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-07
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-07
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-07
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-07
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		9e-07
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-06
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		7e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		7e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		8e-06
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		9e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		1e-05
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-05
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		1e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		2e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		3e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		7e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		9e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-04
1uoh_A	226	Human Gankyrin Length = 226		1e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-04
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		8e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-04
3eb5_A	74	Structure Of The Ciap2 Ring Domain Length = 74		3e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-04
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-04
3t6p_A	345	Iap Antagonist-Induced Conformational Change In Cia		5e-04
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		5e-04
4ayc_B	138	Rnf8 Ring Domain Structure Length = 138		5e-04
4ayc_A	138	Rnf8 Ring Domain Structure Length = 138		6e-04
4epo_C	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		9e-04

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G+ E +K L   GA +   D +G+TPL  A  N G  +V K LI  GA V+A 
Sbjct: 41  LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK 99
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
                G TPLHHAA+ G +  VKLL+S GA+    + D +TPL++AR  G   VV+ +E 
Sbjct: 100 DSD--GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Query: 131 HICIFSGWL 139
                 GWL
Sbjct: 158 Q----GGWL 162

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G+ E +K L   GA +   D +G+TPL  A    G  ++ K LI  GA V+A 
Sbjct: 41  LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-KEGHKEIVKLLISKGADVNAK 99
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
                G TPLH+AAK G +  VKLL+S GA+    + D +TPL++AR  G   +V+ +E 
Sbjct: 100 DS--DGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 131 HICIFSGWL 139
                 GWL
Sbjct: 158 Q----GGWL 162

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G+ E +K L   GA     D +GKTPL  A  N G  +V K L+  GA  +A 
Sbjct: 41  LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN-GHKEVVKLLLSQGADPNAK 99
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
                G TPLH AA+ G +  VKLLLS GA+    + D +TPL++AR  G   VV+ +E 
Sbjct: 100 DS--DGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Query: 131 HICIFSGWLR 140
                 GWL 
Sbjct: 158 Q----GGWLE 163

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G+ E +K L   GA     D +G+TPL  A  N G  ++ K L+  GA  +A 
Sbjct: 41  LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN-GHKEIVKLLLSKGADPNAK 99
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
                G TPLH+AA+ G +  VKLLLS GA+    + D +TPL++AR  G   +V+ +E 
Sbjct: 100 DS--DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 131 HICIFSGWL 139
                 GWL
Sbjct: 158 Q----GGWL 162

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 18  GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
           G++E +K L   GA +   DK G+TPL  A  N G  +V K L+E GA V+A    ++G 
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNGR 69
Query: 78  TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
           TPLH AA+ G    VKLLL  GA+    + + +TPL +A   G   VV+ +
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 18  GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
           G++E +K L   GA +   DK G+TPL  A  N G  +V K L+E GA V+A    ++G 
Sbjct: 13  GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNGR 69
Query: 78  TPLHHAAKRGLERTVKLLLSYGA 100
           TPLH AA+ G    VKLLL  GA
Sbjct: 70  TPLHLAARNGHLEVVKLLLEAGA 92

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 32  GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERT 91
           G  W  K+G TPL  A  N G  +  K L+  GA V+A    + G TPLH AAK G    
Sbjct: 1   GHMWGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEI 57
Query: 92  VKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
           VKLLL+ GA+    + D  TP  +A+  G   +V+ ++
Sbjct: 58  VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   DK+G TPL  A    G  ++ + L++ GA V+A 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA- 63
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
              + G TPLH AA+ G    V++LL  GA+    + D  TPL +A  +G   +V  +
Sbjct: 64  -KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   DK+G TPL  A    G  ++ + L++ GA V+A 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA- 63
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
              + G TPLH AA+ G    V++LL  GA+    + D  TPL +A  +G   +V  +
Sbjct: 64  -KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           L+  VN    E ++ L   GA ++ +D K G++PLI A  N  L  + + L++ GA V+A
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMVQLLLQHGANVNA 178
Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                 G + LH A+ RGL   V+ L+  GA++ + N    TPL VAR++   +++R
Sbjct: 179 QMYS--GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G +  ++ L ++GA  + + K  ++ L  AC + G  D+ K L++ G  V+ Y    +G
Sbjct: 44  HGQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNG 100
Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132
           GTPL +A      + VK+LL  GA+  +  D     +++A A G+ +V + IE+H+
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 156

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G +  ++ L ++GA  + + K  ++ L  AC + G  D+ K L++ G  V+ Y    +G
Sbjct: 62  HGQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNG 118
Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132
           GTPL +A      + VK+LL  GA+  +  D     +++A A G+ +V + IE+H+
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 174

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+    Y  V  ++ L + GA +   DK G  PL  AC + G Y+VA+ L++ GA V+  
Sbjct: 46  LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVA 104
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNV 124
              +   TPLH AA +G     KLLL +GA+    N D  TPL++ +  G T++
Sbjct: 105 DLWKF--TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDI 155

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G +  ++ L ++GA  + + K  ++ L  AC + G  D+ K L++ G  V+ Y    +G
Sbjct: 46  HGQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNG 102
Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132
           GTPL +A      + VK+LL  GA+  +  D     +++A A G+ +V + IE+H+
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+    Y  V  ++ L + GA +   DK G  PL  AC + G Y+VA+ L++ GA V+  
Sbjct: 50  LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVA 108
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNV 124
              +   TPLH AA +G     KLLL +GA+    N D  TPL++ +  G T++
Sbjct: 109 DLWKF--TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDI 159

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+    Y  V  ++ L + GA +   DK G  PL  AC + G Y+VA+ L++ GA V+  
Sbjct: 48  LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVA 106
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVAR 117
              +   TPLH AA +G     KLLL +GA+    N D  TPL++ +
Sbjct: 107 DLWKF--TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +  +D  G TPL  A ++ G  ++ + L++ GA VDA 
Sbjct: 18  LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVS-GHLEIVEVLLKHGADVDA- 75
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
               +G TPLH AA  G    V++LL YGA+    +    TPL +A  +G   +V  +
Sbjct: 76  -ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G +E ++ L   GA    + KE ++ L  A    G  D+   L+E    ++ Y    +G
Sbjct: 46  FGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYD--WNG 102
Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
           GTPL +A +    + V+ LL+ GA+     D   TP+++A A G+  V + IENHI 
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   D +G TPL  A  N G  ++ + L++ GA V+A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASN-GHLEIVEVLLKNGADVNA- 75
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
                G TPLH AA  G    V++LL +GA+    ++D  TPL +A   G   +V  +  
Sbjct: 76  -SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 131 H 131
           H
Sbjct: 135 H 135

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   DK+G TPL  A    G  ++ + L++ GA V+A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA- 75
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
              + G TPLH AA+ G    V++LL  GA+    + D  TPL +A  +G   +V  +
Sbjct: 76  -KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   D  G TPL  A    G  ++ + L++ GA VDA 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAY-SGHLEIVEVLLKHGADVDA- 75
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
                G TPLH AA  G    V++LL  GA+   ++ D  TPL +A   G+  +V  +  
Sbjct: 76  -SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 131 H 131
           H
Sbjct: 135 H 135

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G +E ++ L   GA    + KE ++ L  A    G  D+   L+E    ++ Y    +G
Sbjct: 46  FGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYD--WNG 102
Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
           GTPL +A      + V+ LL+ GA+     D   TP+++A A G+  V + IENHI 
Sbjct: 103 GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+   ++G++E ++ L ++GA +   D  G TPL  A    G  ++ + L++ GA V+A 
Sbjct: 51  LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAA-RRGHLEIVEVLLKNGADVNAS 109
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
               HG TPLH AAKRG    V++LL  GA+    +   +T  +++   G
Sbjct: 110 DS--HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 18  GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
           G+ E +  L   GA + + + +G T L  AC++  + D+ K L+E GA ++  +P   G 
Sbjct: 51  GDTEEVLRLLERGADINYANVDGLTALHQACIDDNV-DMVKFLVENGANIN--QPDNEGW 107
Query: 78  TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115
            PLH AA  G     + L+S GA+   +N +  TPL++
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   D  G TPL  A    G  ++ + L++ GA V+A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAA-RVGHLEIVEVLLKNGADVNAL 76
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
                G TPLH AAKRG    V++LL YGA+    +    TPL +A   G   +V  +
Sbjct: 77  DFS--GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   D  G TPL  A  N G  ++ + L++ GA V+A 
Sbjct: 10  LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAAN-GQLEIVEVLLKNGADVNAS 68
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
                G TPLH AA  G    V++LL +GA+    +    TPL +A   G   +V  +  
Sbjct: 69  DSA--GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 131 H 131
           H
Sbjct: 127 H 127

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
           L +    G  + ++ L  +GA     D  G+TPL +AA +  G  ++ + L+  GA V+A
Sbjct: 6   LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAV--GHLEIVEVLLRNGADVNA 63
Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
                +G TPLH AA  G    V++LL YGA+    +    TPL +A   G   +V  + 
Sbjct: 64  V--DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 130 NH 131
            H
Sbjct: 122 KH 123

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 18  GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
           G  + ++ L  +GA +   D  G TPL    +N G  ++ + L++  A V+A    + G 
Sbjct: 25  GQDDEVRILMANGADVNANDWFGITPL-HLVVNNGHLEIIEVLLKYAADVNA--SDKSGW 81
Query: 78  TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
           TPLH AA RG    V++LL YGA+   ++    TPL +A   G   +V  +
Sbjct: 82  TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 8   EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
           E LL+     G++  ++ L ++G+     D  G TPL  AC N G   V + L++  A V
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC-NHGHLKVVELLLQHKALV 69
Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN 106
           +    G    +PLH AAK G    VKLLLSYGA+   +N
Sbjct: 70  NT--TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
           L+  V++ N++ +K L   G         G TPL IAA  N    +VA++L++ G   +A
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ--VEVARSLLQYGGSANA 240
Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
                 G TPLH AA+ G    V LLLS  AN  + N    TPL +   +G   V   + 
Sbjct: 241 --ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 130 NHICIFSGWLRELYGP 145
            H  +     R  Y P
Sbjct: 299 KHGVMVDATTRMGYTP 314

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+    YG++E ++ L + GA +  ID  G TPL  A +  G  ++ + L++ GA V+A 
Sbjct: 51  LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAAL-IGHLEIVEVLLKHGADVNAV 109
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
                G TPLH AA  G    V++LL +GA+
Sbjct: 110 DTW--GDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   D  G TPL  A    G  ++ + L++ GA V+A+
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAA-KTGHLEIVEVLLKYGADVNAW 76
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
               +G TPLH AA  G    V++LL +GA+    + +  TPL +A   G   +V  +
Sbjct: 77  D--NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+    +G++E ++ L ++GA +   D  G TPL  A  + G  ++ + L++ GA V+A 
Sbjct: 51  LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAA-HFGHLEIVEVLLKNGADVNAK 109
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
               +G TPLH AA RG    V++LL YGA+    +   +T  +++   G
Sbjct: 110 DD--NGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNG 157

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+    YG++E ++ L + GA +  ID  G TPL  A +  G  ++ + L++ GA V+A 
Sbjct: 51  LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAAL-IGHLEIVEVLLKHGADVNAV 109
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
                G TPLH AA  G    V++LL +GA+
Sbjct: 110 DTW--GDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L++    G++  +K L + GA +  +  +  TPL  AC++ G +D    L++ GA V   
Sbjct: 40  LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASV--- 95
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           +P     +P+H AA+RG    V  L++YG N         TPL +A
Sbjct: 96  QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 141

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
           L +    G  + ++ L  +GA +   D +G TPL +AA +  G  ++ + L++ GA V+A
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWI--GHPEIVEVLLKHGADVNA 75
Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
                 G TPLH AA  G    V++LL YGA+    +    TPL +A  +G   +V  + 
Sbjct: 76  RDTD--GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Query: 130 NH 131
            H
Sbjct: 134 KH 135

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   D  GKTPL  A +  G  ++ + L++ GA V+A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAI-KGHLEIVEVLLKHGADVNA- 75
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
              + G TPLH AA  G    V++LL  GA+    +    TPL +A   G   +V  +
Sbjct: 76  -ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L++    G++  +K L + GA +  +  +  TPL  AC++ G +D    L++ GA V   
Sbjct: 96  LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASV--- 151
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           +P     +P+H AA+RG    V  L++YG N         TPL +A
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 197

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+    Y  V  ++ L + GA +   DK G  PL  AC + G Y+V + L++ GA V+A 
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVTELLLKHGACVNAM 120
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
              +   TPLH AA +       LLLS+GA+  ++N   ++ +++A
Sbjct: 121 DLWQF--TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 20/151 (13%)
Query: 4   QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL 63
            Q+K   L+     G+V+    L + GA ++   ++ +TPL+ A  N  L +  K LI+ 
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL-EAVKYLIKA 66
Query: 64  GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQ-TPL--------- 113
           GA VD       G T LH AAK+G    V+ LLS G   +   DD   TP+         
Sbjct: 67  GALVDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 114 ---EVARAKGFTNVVRAIENHICI----FSG 137
              ++  +KG    +R  E +IC+    FSG
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSG 155

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
           L +    G  + ++ L  +GA +  +D++G TPL +AA +  G  ++ + L++ GA V+A
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQL--GHLEIVEVLLKYGADVNA 75
Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
                 G TPLH AA RG    V++LL +GA+
Sbjct: 76  --EDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
           L+   + G  E +KAL   GA +  +++ G TPL  AA  N   +++A  L+E GA  DA
Sbjct: 77  LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR--HEIAVMLLEGGANPDA 134
Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
                +  T +H AA +G  + V +LL Y A+  + + +  TPL +A
Sbjct: 135 --KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
           L+   + G  E +KAL   GA +  +++ G TPL  AA  N   +++A  L+E GA  DA
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR--HEIAVMLLEGGANPDA 134
Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
                +  T +H AA +G  + V +LL Y A+  + + +  TPL +A
Sbjct: 135 --KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+    +G++E ++ L ++GA +   D  G TPL  A  + G  +V + L++ GA V+A 
Sbjct: 51  LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAA-DRGHLEVVEVLLKNGADVNAN 109
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
               +G TPLH AA  G    V++LL +GA+    +   +T  +++   G
Sbjct: 110 D--HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 33  LEWIDKEGKTPLIAACMNPGLYDVA--KTLIELGAKVDAYRPGR------HGGTPLHHAA 84
           +E +D+ G T L     N G   VA  K L+E GAKVD     R       G T LH+AA
Sbjct: 228 IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 85  KRGLERTVKLLL-SYGANALVLNDDCQTPLEVARAKGFTNVV 125
           +      VK L+   G+N    ++D +TP+ +A  +G   VV
Sbjct: 288 QVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
           L+   + G  E +KAL   GA +  +++ G TPL  AA  N   +++A  L+E GA  DA
Sbjct: 77  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR--HEIAVMLLEGGANPDA 134
Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
                +  T +H AA +G  + + +LL Y A+  + + +  TPL +A
Sbjct: 135 --KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
           L+   + G  E +KAL   GA +  +++ G TPL  AA  N   +++A  L+E GA  DA
Sbjct: 78  LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR--HEIAVMLLEGGANPDA 135
Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
                +  T +H AA +G  + + +LL Y A+  + + +  TPL +A
Sbjct: 136 --KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +  +D  G TPL  A    G  ++ + L++ GA V+A 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKR-GHLEIVEVLLKHGADVNA- 75
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
                G TPLH AA  G    V++LL YGA+
Sbjct: 76  -SDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 52  GLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT 111
           G  D  + L+  GA V+A      G TPLH AAKRG    V++LL +GA+    +   +T
Sbjct: 25  GQDDEVRILMANGADVNAMDDA--GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
Query: 112 PLEVARAKGFTNVVRAI 128
           PL +A   G   +V  +
Sbjct: 83  PLHLAATVGHLEIVEVL 99

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G+ + +K L    A     D  G TPLI AC + G +++   L++ GA ++A 
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC-SGGHHELVALLLQHGASINA- 180
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
                G T LH A        V+LLL +GA+  VLN   +T ++ A
Sbjct: 181 -SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   DK G TPL  A MN  L ++ + L++ GA V+A 
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHL-EIVEVLLKNGADVNAI 76
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
                G TPLH  A  G    V++LL +GA+
Sbjct: 77  DA--IGETPLHLVAMYGHLEIVEVLLKHGAD 105

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 18  GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
           G++E ++ L ++GA +  +D  G TPL  A +  G  ++ + L++ GA V+A     H  
Sbjct: 58  GHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL-FGHLEIVEVLLKNGADVNANDMEGH-- 114
Query: 78  TPLHHAAKRGLERTVKLLLSYGAN 101
           TPLH AA  G    V++LL  GA+
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGAD 138

>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain Length = 74

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
           +C +C+D  V    +PCGH+  C  C   ++     CP+CR+ I   +R +
Sbjct: 26  TCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRK----CPICRSTIKGTVRTF 72

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 40  GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
           GK  L AA    G  D  + L+  GA V+A    R G TPLH AA       V++LL +G
Sbjct: 15  GKKLLEAA--RAGQDDEVRILMANGADVNA--NDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           A+    ++D  TPL +A   G   +V  +  H
Sbjct: 71  ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +  +D  G TPL  A    G  ++ + L++ GA V+A 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKR-GHLEIVEVLLKHGADVNA- 75
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
                G TPLH AA  G    V++LL YGA+
Sbjct: 76  -SDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105

>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
           +C +C+D  V    +PCGH+  C  C   ++     CP+CR  I   +R +
Sbjct: 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSLRK----CPICRGIIKGTVRTF 343

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +  +D  G TPL  A    G  ++ + L++ GA V+A 
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKR-GHLEIVEVLLKHGADVNAR 76
Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
                G TPLH AA  G    V++LL YGA+
Sbjct: 77  --DIWGRTPLHLAATVGHLEIVEVLLEYGAD 105

>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 409 VDVSSPSIEQLPCSKSKVKGDKDATSS-----------CVICLDAPVEGACVPCGHMAGC 457
           +   +  +EQ    K K++  K+   S           C+IC +  +E   + C H + C
Sbjct: 18  IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH-SFC 76
Query: 458 MSCLNEVKAKKWGCPVCRANI 478
             C+NE   +K  CP+CR +I
Sbjct: 77  SYCINEWMKRKIECPICRKDI 97

>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure Length = 138

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 409 VDVSSPSIEQLPCSKSKVKGDKDATSS-----------CVICLDAPVEGACVPCGHMAGC 457
           +   +  +EQ    K K++  K+   S           C+IC +  +E   + C H + C
Sbjct: 18  IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH-SFC 76
Query: 458 MSCLNEVKAKKWGCPVCRANI 478
             C+NE   +K  CP+CR +I
Sbjct: 77  SYCINEWMKRKIECPICRKDI 97

>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 409 VDVSSPSIEQLPCSKSKVKGDKDATSS-----------CVICLDAPVEGACVPCGHMAGC 457
           +   +  +EQ    K K++  K+   S           C+IC +  +E   + C H + C
Sbjct: 29  IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH-SFC 87
Query: 458 MSCLNEVKAKKWGCPVCRANI 478
             C+NE   +K  CP+CR +I
Sbjct: 88  SYCINEWMKRKIECPICRKDI 108

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	487
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-20
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-23
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	8e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-23
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	8e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-22
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-17
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-22
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-10
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-22
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-21
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-18
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-15
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-18
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-08
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-20
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-19
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	7e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-18
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	9e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-19
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-18
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-16
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	1e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-17
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-06
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	5e-17
2rfa_A	232	Transient receptor potential cation channel subfa	7e-16
2rfa_A	232	Transient receptor potential cation channel subfa	5e-14
2rfa_A	232	Transient receptor potential cation channel subfa	2e-13
2rfa_A	232	Transient receptor potential cation channel subfa	8e-13
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	2e-15
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	3e-15
2etb_A	256	Transient receptor potential cation channel subfam	8e-15
2etb_A	256	Transient receptor potential cation channel subfam	7e-14
2etb_A	256	Transient receptor potential cation channel subfam	4e-12
2etb_A	256	Transient receptor potential cation channel subfam	1e-11
2etb_A	256	Transient receptor potential cation channel subfam	8e-06
2pnn_A	273	Transient receptor potential cation channel subfa	2e-14
2pnn_A	273	Transient receptor potential cation channel subfa	3e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-14
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-11
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
2ea5_A	68	Cell growth regulator with ring finger domain prot	5e-14
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	8e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-08
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	6e-08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	7e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-07
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	4e-07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	6e-07
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	3e-06
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-06
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-06
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	5e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	6e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	8e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	9e-05
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	3e-04
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	5e-04
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	5e-04
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	6e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	6e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	8e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	8e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	8e-04

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  101 bits (254), Expect = 8e-26
 Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 3/115 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G++  ++ L ++G+     D  G TPL  AC + G   V + L++  A V+    G   
Sbjct: 20  KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNT--TGYQN 76

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
            +PLH AAK G    VKLLLSYGA+   +N     P++    +   +++   E +
Sbjct: 77  DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 76.3 bits (189), Expect = 6e-17
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
           +  G+T L  A +  G     + L++ G+  +       G TPLH A   G  + V+LLL
Sbjct: 7   NHRGETLLHIASIK-GDIPSVEYLLQNGSDPNV--KDHAGWTPLHEACNHGHLKVVELLL 63

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            + A          +PL  A   G  ++V+
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVK 93

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 74.0 bits (183), Expect = 4e-16
 Identities = 18/86 (20%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 16  NYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
           N+G+++ ++ L +  A +     +  +PL  A  N G  D+ K L+  GA  +A      
Sbjct: 52  NHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKN-GHVDIVKLLLSYGASRNA--VNIF 108

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGAN 101
           G  P+ +     ++  + L     ++
Sbjct: 109 GLRPVDYTDDESMKSLLLLPEKNESS 134

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 97.5 bits (244), Expect = 5e-24
 Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 3/115 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G +E ++ L   GA    + KE ++ L  A    G  D+   L+E    ++ Y    +G
Sbjct: 46  FGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIY--DWNG 102

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           GTPL +A +    + V+ LL+ GA+     D   TP+++A A G+  V + IENH
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 29/111 (26%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWI-DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
            G ++ +K   R G  L    D+ G TPLI A    G  +  + L+E GA        + 
Sbjct: 12  QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHI--LAKE 68

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
             + L  A+  G    V LLL    +  + + +  TPL  A        V 
Sbjct: 69  RESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVE 119

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 85.2 bits (212), Expect = 1e-19
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 3/96 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G  + +  L      +   D  G TPL+ A          + L+  GA +        G
Sbjct: 79  GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRG-NHVKCVEALLARGADLTT--EADSG 135

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTP 112
            TP+  A   G  +  +++ ++       N     P
Sbjct: 136 YTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 74.4 bits (184), Expect = 8e-16
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 4/88 (4%)

Query: 40  GKTPLIAACMNPGLYDVAKTLIELGA-KVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSY 98
               +       G  D  K  +  G   V+   P   G TPL  A+  G   TV+ LL +
Sbjct: 2   DSLSIHQLAAQ-GELDQLKEHLRKGDNLVNK--PDERGFTPLIWASAFGEIETVRFLLEW 58

Query: 99  GANALVLNDDCQTPLEVARAKGFTNVVR 126
           GA+  +L  + ++ L +A   G+T++V 
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVG 86

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 51.6 bits (125), Expect = 5e-08
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L   V   +V+ ++AL   GA L      G TP+  A    G   V + +     K+   
Sbjct: 106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVAL-GYRKVQQVIENHILKLFQ- 163

Query: 71  RPGRHGGTP 79
                   P
Sbjct: 164 -SNLVPADP 171

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 95.9 bits (240), Expect = 2e-23
 Identities = 35/115 (30%), Positives = 62/115 (53%), Gaps = 3/115 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G +  ++ L ++GA  + + K  ++ L  AC   G  D+ K L++ G  V+ Y    +G
Sbjct: 46  HGQIAVVEFLLQNGADPQLLGKGRESALSLACSK-GYTDIVKMLLDCGVDVNEY--DWNG 102

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           GTPL +A      + VK+LL  GA+  +  D     +++A A G+ +V + IE+H
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 90.5 bits (226), Expect = 1e-21
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G +  +         +   D+EG TPL+ A  + G   V + L++ GA       G+  
Sbjct: 13  QGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQL--LGKGR 69

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            + L  A  +G    VK+LL  G +    + +  TPL  A        V+
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVK 119

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 80.9 bits (201), Expect = 4e-18
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 3/92 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G  + +K L   G  +   D  G TPL+ A          K L+E GA          G
Sbjct: 79  KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHG-NHVKCVKMLLESGADPTI--ETDSG 135

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDD 108
              +  A   G     +++ S+    L    +
Sbjct: 136 YNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 3/87 (3%)

Query: 40  GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
               +       G      T IE    ++       G TPL  AA  G    V+ LL  G
Sbjct: 3   NSLSVHQLAAQ-GEMLYLATRIEQENVINH--TDEEGFTPLMWAAAHGQIAVVEFLLQNG 59

Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVR 126
           A+  +L    ++ L +A +KG+T++V+
Sbjct: 60  ADPQLLGKGRESALSLACSKGYTDIVK 86

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 56.2 bits (137), Expect = 1e-09
 Identities = 11/52 (21%), Positives = 18/52 (34%)

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                +H  A +G    +   +         +++  TPL  A A G   VV 
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVE 53

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.2 bits (116), Expect = 8e-07
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           L   V+  +V+ +K L   GA        G   +  A    G   V + +     K+  
Sbjct: 106 LLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVAL-GYRSVQQVIESHLLKLLQ 163

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  100 bits (251), Expect = 5e-23
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G+V     L + G  ++   + G TPL  A    G   + K L++  A V+A    + G
Sbjct: 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHY-GNIKLVKFLLQHQADVNA--KTKLG 344

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            +PLH AA++G    V LLL  GA+   ++ D  TPL +A+  G+ +V  
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 98.3 bits (246), Expect = 2e-22
 Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           YG V   + L    A      K G TPL  A  +    D+ K L+  G    +  P  +G
Sbjct: 156 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHH-NNLDIVKLLLPRGGSPHS--PAWNG 212

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            TPLH AAK+      + LL YG +A   +    TPL +A  +G   +V 
Sbjct: 213 YTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.9 bits (245), Expect = 3e-22
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 3/116 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+  V++ N++ +K L   G         G TPL  A       +VA++L++ G   +A 
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLLQYGGSANA- 240

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                G TPLH AA+ G    V LLLS  AN  + N    TPL +   +G   V  
Sbjct: 241 -ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVAD 295

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.6 bits (239), Expect = 2e-21
 Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 3/116 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G+ E  K L ++ A +    K+ +TPL  A    G  ++ K L+E  A  +  
Sbjct: 51  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI-GHTNMVKLLLENNANPNL- 108

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                G TPLH AA+ G   TV  LL   A+   +     TPL VA   G   V  
Sbjct: 109 -ATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G++  +K L + GA     + + +TPL  A    G  +VAK L++  AKV+A    +  
Sbjct: 24  MGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDD 80

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            TPLH AA+ G    VKLLL   AN  +      TPL +A  +G    V 
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVL 130

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.2 bits (230), Expect = 2e-20
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G+   +K L  + A        G TPL  A    G  +    L+E  A        + G
Sbjct: 90  IGHTNMVKLLLENNANPNLATTAGHTPLHIAARE-GHVETVLALLEKEASQAC--MTKKG 146

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            TPLH AAK G  R  +LLL   A+      +  TPL VA      ++V+
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 196

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.5 bits (223), Expect = 2e-19
 Identities = 28/110 (25%), Positives = 43/110 (39%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
              VE  ++L + G        +G TPL  A    G  ++   L+   A  +     + G
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE-GHAEMVALLLSKQANGNL--GNKSG 278

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            TPLH  A+ G      +L+ +G           TPL VA   G   +V+
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVK 328

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 88.3 bits (220), Expect = 4e-19
 Identities = 32/97 (32%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 30  GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLE 89
           G       + G TPL  A    G   + K L++ GA  +         TPLH AA+ G  
Sbjct: 4   GISGGGGGESGLTPLHVASFM-GHLPIVKNLLQRGASPNV--SNVKVETPLHMAARAGHT 60

Query: 90  RTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
              K LL   A       D QTPL  A   G TN+V+
Sbjct: 61  EVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 97

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.5 bits (197), Expect = 4e-16
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
            +YGN++ +K L +  A +    K G +PL  A    G  D+   L++ GA  +      
Sbjct: 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ-GHTDIVTLLLKNGASPNE--VSS 375

Query: 75  HGGTPLHHAAKRGLERTVKLL---LSYGANALVLNDDCQTPLEVAR 117
            G TPL  A + G      +L       +  LV +    +  E   
Sbjct: 376 DGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 11/92 (11%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV-DA 69
           L+Q    G+ + +  L ++GA    +  +G TPL  A    G   V   L  +  +    
Sbjct: 348 LHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRL-GYISVTDVLKVVTDETSFV 406

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
               +H  +            TV  +L    +
Sbjct: 407 LVSDKHRMSFPE---------TVDEILDVSED 429

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 92.5 bits (231), Expect = 8e-23
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G+++ +K     G  +    + G+ PL  A    G  ++ + L+  GA ++A  P +H 
Sbjct: 17  NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINA--PDKHH 73

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            TPL  A   G    VKLLLS GA+  V   D  T  E    +    +++
Sbjct: 74  ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 74.7 bits (185), Expect = 2e-16
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 36  IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
           +        + A  N G  D  K  +  G  V+       G  PLH+AA  G    ++ L
Sbjct: 3   LGSMCDKEFMWALKN-GDLDEVKDYVAKGEDVNR--TLEGGRKPLHYAADCGQLEILEFL 59

Query: 96  LSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           L  GA+    +    TPL  A  +G  + V+
Sbjct: 60  LLKGADINAPDKHHITPLLSAVYEGHVSCVK 90

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 95.6 bits (239), Expect = 1e-22
 Identities = 27/115 (23%), Positives = 49/115 (42%), Gaps = 1/115 (0%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G+   +  L   G  ++ +D+ G TPL+ A       D  + L+     V+      H 
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHK 177

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
            T LH A   G    + LLL  GAN    N   ++ L++A+ +    ++  ++  
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 93.7 bits (234), Expect = 6e-22
 Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 2/110 (1%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           YG  E  + L   G  +   DKE  T L  A +N    D+ K  I  GA VD    G   
Sbjct: 19  YGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYISKGAIVDQ-LGGDLN 76

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            TPLH A ++G    V  L+ YGA+  +++ +  + + +A   G T++V 
Sbjct: 77  STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA 126

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.1 bits (204), Expect = 6e-18
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 4/92 (4%)

Query: 36  IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
           ID      ++ A    G+Y+  + L+E G  V    P +   T LH AA       VK  
Sbjct: 5   IDDYSTWDIVKATQY-GIYERCRELVEAGYDVRQ--PDKENVTLLHWAAINNRIDLVKYY 61

Query: 96  LSYGANALVLNDDC-QTPLEVARAKGFTNVVR 126
           +S GA    L  D   TPL  A  +G  ++V 
Sbjct: 62  ISKGAIVDQLGGDLNSTPLHWATRQGHLSMVV 93

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 81.7 bits (203), Expect = 8e-18
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 5/112 (4%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKE-GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
              ++ +K     GA ++ +  +   TPL  A    G   +   L++ GA          
Sbjct: 52  NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADPSL--IDGE 108

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT-NVVR 126
           G + +H AA+ G    V  L++ G +  +++ +  TPL  A  +  + +  R
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.8 bits (172), Expect = 1e-13
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 30  GAGLEWIDK-EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL 88
              +   DK    T L  A +  G   V   L+E GA VDA      G + L  A +R  
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLA-GNTTVISLLLEAGANVDA--QNIKGESALDLAKQRKN 222

Query: 89  ERTVKLLLSYGAN 101
              +  L      
Sbjct: 223 VWMINHLQEARQA 235

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
            GN   I  L   GA ++  + +G++ L  A        +   L E       
Sbjct: 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQR-KNVWMINHLQEARQAKGY 238

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 94.6 bits (236), Expect = 2e-22
 Identities = 29/122 (23%), Positives = 57/122 (46%), Gaps = 4/122 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGAKVDA 69
           L++    GN+  ++    +  G+  +DK G T L  AC   G  D+ + L  +   +++ 
Sbjct: 77  LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GHKDIVEMLFTQPNIELNQ 135

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
               + G T LH AA +G    V+LLL+ GA   + N + +   ++A      ++++  +
Sbjct: 136 --QNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ 193

Query: 130 NH 131
             
Sbjct: 194 GT 195

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.9 bits (203), Expect = 5e-18
 Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 4/111 (3%)

Query: 11  LYQQVNYGNVEGIKAL-CRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           LY   + G+ + ++ L  +    L   +K G T L AA    G  D+ + L+  GA+ D 
Sbjct: 110 LYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK-GYADIVQLLLAKGARTDL 168

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
                        A        +K      A   + N +     E +  + 
Sbjct: 169 --RNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 69.6 bits (171), Expect = 8e-14
 Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 8/115 (6%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           +++ +          L  +   + +I     T               +T +     V   
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK------GRTGLIPSNYVAE- 68

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
                   PLH AAKRG    ++  L        L+    T L  A   G  ++V
Sbjct: 69  -QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIV 122

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 12/67 (17%), Positives = 21/67 (31%)

Query: 72  PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           P + G   +  A      RT   L     + + + D   T      +KG T ++ +    
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 67

Query: 132 ICIFSGW 138
               S  
Sbjct: 68  EQAESID 74

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.1 bits (136), Expect = 3e-09
 Identities = 12/90 (13%), Positives = 21/90 (23%), Gaps = 8/90 (8%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
            K G+  +  A            L      +          T       +G     +  L
Sbjct: 9   VKPGQVKVFRALYT-FEPRTPDELYIEEGDIIY--ITDMSDTNWWKGTSKG-----RTGL 60

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                     +    PL  A  +G  + +R
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLR 90

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 96.1 bits (240), Expect = 2e-22
 Identities = 25/112 (22%), Positives = 39/112 (34%), Gaps = 6/112 (5%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
           +N    + +K+           D  G +    A  +     +  TL+  GA  +      
Sbjct: 7   INTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIAD-NNVRLVCTLLNAGALKNLL---- 60

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
               PLH AA     + VK+LL  G +    +D   T L  A   G    V+
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 84.5 bits (210), Expect = 2e-18
 Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 6/113 (5%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
           +   NV  +  L   GA       E + PL  A        + K L+  G          
Sbjct: 39  IADNNVRLVCTLLNAGALKN--LLENEFPLHQAATL-EDTKIVKILLFSGLDDSQ--FDD 93

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVL-NDDCQTPLEVARAKGFTNVVR 126
            G T L++A   G  +TVKL +      +       +T    A      ++V 
Sbjct: 94  KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.0 bits (193), Expect = 3e-16
 Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 6/118 (5%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEG-KTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           LY  V+ GN++ +K   +    L +  K G KT    A M      +    +        
Sbjct: 99  LYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVML-NDVSIVSYFLSEIPSTFD 157

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTP-LEVARAKGFTNVVR 126
                   + +H   K G    + LLL Y  +    N     P +++A       +++
Sbjct: 158 ---LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ 212

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.5 bits (158), Expect = 1e-11
 Identities = 11/110 (10%), Positives = 30/110 (27%), Gaps = 13/110 (11%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLI-AACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
            G+V+ +  L          +     P I  A  N    ++ + L +    +        
Sbjct: 171 NGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDN-KDIEMLQALFKYDINIY------- 222

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
             +              K+++         +D     L++ +      ++
Sbjct: 223 --SANLENVLLDDAEIAKMIIEKHVE--YKSDSYTKDLDIVKNNKLDEII 268

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.5 bits (145), Expect = 5e-10
 Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 10/88 (11%)

Query: 40  GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
           G                +K L    +  D ++   HG +  ++A      R V  LL+ G
Sbjct: 1   GMDLSRINTWK------SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG 54

Query: 100 ANALVLND-DCQTPLEVARAKGFTNVVR 126
           A     N  + + PL  A     T +V+
Sbjct: 55  AL---KNLLENEFPLHQAATLEDTKIVK 79

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 90.9 bits (227), Expect = 3e-22
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G++E +K L   GA +   DK G+TPL  A  N G  +V K L+E GA V+A    ++G
Sbjct: 12  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNG 68

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            TPLH AA+ G    VKLLL  GA+    + + +TPL +A   G   VV+
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 118

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.9 bits (196), Expect = 5e-18
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G++E +K L   GA +   DK G+TPL  A  N G  +V K L+E GA V+A    ++G
Sbjct: 45  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNG 101

Query: 77  GTPLHHAAKRGLERTVKLLLSYGA 100
            TPLH AA+ G    VKLLL  GA
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 75.8 bits (188), Expect = 6e-17
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 40  GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
           G+TPL  A  N G  +V K L+E GA V+A    ++G TPLH AA+ G    VKLLL  G
Sbjct: 2   GRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVR 126
           A+    + + +TPL +A   G   VV+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVK 85

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 52.7 bits (128), Expect = 9e-09
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           +G TPLH AA+ G    VKLLL  GA+    + + +TPL +A   G   VV+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 95.6 bits (239), Expect = 3e-22
 Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G+VE + +L   G  ++       TPL  AC N       K L+E GA V+    G+  
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN-QQRACVKKLLESGADVNQ---GKGQ 222

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
            +PLH   +   E    LL+ +GA+    N + + P+E+   +     +
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 93.3 bits (233), Expect = 2e-21
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G++  +K L + GA +  +  +  TPL  AC++ G +D    L++ GA V         
Sbjct: 102 GGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQP---ESDL 157

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            +P+H AA+RG    V  L++YG N         TPL +A        V+
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVK 207

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 90.2 bits (225), Expect = 2e-20
 Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 8/112 (7%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G+   ++ L   G  +  I  +  +PL  AC+  G     K L++ GA+V+        
Sbjct: 69  HGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNG--VTADW 125

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLN--DDCQTPLEVARAKGFTNVVR 126
            TPL +A   G    V LLL +GA+   +    D  +P+  A  +G    V 
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGAS---VQPESDLASPIHEAARRGHVECVN 174

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 80.6 bits (200), Expect = 4e-17
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 32  GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERT 91
            L        +P+  A ++ G     + LI  G  V+         +PLH A   G    
Sbjct: 51  PLMGDAVSDWSPMHEAAIH-GHQLSLRNLISQGWAVNI--ITADHVSPLHEACLGGHLSC 107

Query: 92  VKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           VK+LL +GA    +  D  TPL  A   G  + V 
Sbjct: 108 VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVN 142

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 69.4 bits (171), Expect = 2e-13
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           LY          +K L   GA +    K   +PL A        ++A  L++ GA   A 
Sbjct: 194 LYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRT-ASEELACLLMDFGADTQA- 250

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
                G  P+              L   GA+
Sbjct: 251 -KNAEGKRPVELVPPESPL-AQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 55.6 bits (135), Expect = 8e-09
 Identities = 16/109 (14%), Positives = 33/109 (30%), Gaps = 30/109 (27%)

Query: 47  ACMNPGLYDVAKTLIELGAKV---DAYRPGRHGGTPLHHAAKRGLE-------------R 90
              +   +  +  L+  G+ +   D  + G  G  P       G+               
Sbjct: 2   GSSH-HHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 91  T-------------VKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           +             ++ L+S G    ++  D  +PL  A   G  + V+
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVK 109

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 92.2 bits (230), Expect = 6e-22
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
            +      + + +  L  +   ++ +D+ G+T L+      G     + L E GA +D  
Sbjct: 48  WWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDH- 104

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           R  R G T LH AA       V+ L+  GA+  V ++   T LE+AR    T    
Sbjct: 105 RDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 160

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 78.7 bits (195), Expect = 3e-17
 Identities = 29/125 (23%), Positives = 42/125 (33%), Gaps = 15/125 (12%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
              +   G+           A    +  E +TP   A            L+E    VDA 
Sbjct: 18  YLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARK-ADEQALSQLLE-DRDVDA- 71

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN----DDCQTPLEVARAKGFTNVVR 126
               +G T L   A  G ++ V+LL   GA+   L+        T L +A       VV 
Sbjct: 72  -VDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVE 127

Query: 127 A-IEN 130
           A +E 
Sbjct: 128 ALVEL 132

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 17  YGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
            G+ + ++ L   GA L+  D + G T L  A       +V + L+ELGA ++       
Sbjct: 86  LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY-VRPEVVEALVELGADIEV--EDER 142

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGAN 101
           G T L  A +          + +G  
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 68.7 bits (169), Expect = 7e-14
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
             EG    +    + G          + A V +        TP   AA++  E+ +  LL
Sbjct: 11  AGEGAMEYLIEWKD-GHSPSWVPSSYIAADVVSE-----YETPWWTAARKADEQALSQLL 64

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
               +   ++++ +T L      G    VR
Sbjct: 65  E-DRDVDAVDENGRTALLFVAGLGSDKCVR 93

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 93.8 bits (234), Expect = 6e-22
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
             + + +  L  +   ++ +D+ G+T L+      G     + L E GA +D  R  R G
Sbjct: 55  KADEQALSQLL-EDRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDH-RDMRGG 111

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            T LH AA       V+ L+  GA+  V ++   T LE+AR    T    
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKG 161

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 29/125 (23%), Positives = 42/125 (33%), Gaps = 15/125 (12%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
              +   G+           A    +  E +TP   A            L+E    VDA 
Sbjct: 19  YLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARK-ADEQALSQLLE-DRDVDA- 72

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN----DDCQTPLEVARAKGFTNVVR 126
               +G T L   A  G ++ V+LL   GA+   L+        T L +A       VV 
Sbjct: 73  -VDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHMAAGYVRPEVVE 128

Query: 127 A-IEN 130
           A +E 
Sbjct: 129 ALVEL 133

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 7/114 (6%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKE-GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
            G+ + ++ L   GA L+  D   G T L  A       +V + L+ELGA ++       
Sbjct: 87  LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY-VRPEVVEALVELGADIEV--EDER 143

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
           G T L  A +          + +G     +  +    +   +   +  V   +E
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRR---IGLEKVINVLEGQVFEYAEVDEIVE 194

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 23/124 (18%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVD-------- 68
           Y   E ++AL   GA +E  D+ G T L  A             ++ G ++         
Sbjct: 121 YVRPEVVEALVELGADIEVEDERGLTALELAREI-LKTTPKGNPMQFGRRIGLEKVINVL 179

Query: 69  -AYRPGR-----------HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
                              G    +    +       +   + A    +  D +  LE A
Sbjct: 180 EGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE--DVAKDYEDGLEYA 237

Query: 117 RAKG 120
            A+ 
Sbjct: 238 VAES 241

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 7/90 (7%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
             EG    +    + G          + A V +        TP   AA++  E+ +  LL
Sbjct: 12  AGEGAMEYLIEWKD-GHSPSWVPSSYIAADVVS-----EYETPWWTAARKADEQALSQLL 65

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
               +   ++++ +T L      G    VR
Sbjct: 66  E-DRDVDAVDENGRTALLFVAGLGSDKCVR 94

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 10/62 (16%), Positives = 17/62 (27%), Gaps = 3/62 (4%)

Query: 65  AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNV 124
            K+   R    G        K G   +        A+   +  + +TP   A  K     
Sbjct: 4   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARKADEQA 60

Query: 125 VR 126
           + 
Sbjct: 61  LS 62

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 91.0 bits (227), Expect = 6e-22
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G VE ++AL   GA     +  G+ P+    M  G   VA+ L+  GA+ +        
Sbjct: 22  RGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM--GSARVAELLLLHGAEPNC--ADPAT 77

Query: 77  GT-PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            T P+H AA+ G   T+ +L   GA   V +   + P+++A   G  +V R
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 83.3 bits (207), Expect = 4e-19
 Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 9/110 (8%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKT-PLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
            G+    + L   GA     D    T P+  A    G  D    L   GA++D       
Sbjct: 54  MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE-GFLDTLVVLHRAGARLDV--RDAW 110

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
           G  P+  A + G     + L +                 +  A+G +++ 
Sbjct: 111 GRLPVDLAEELGHRDVARYLRAAAGGT-----RGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 74.8 bits (185), Expect = 3e-16
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
            +     L  A    G  +  + L+E GA  +A  P  +G  P+            +LLL
Sbjct: 9   MEPSADWLATAAAR-GRVEEVRALLEAGANPNA--PNSYGRRPIQVMMMGSAR-VAELLL 64

Query: 97  SYGANALVLNDDCQT-PLEVARAKGFTNVVRA 127
            +GA     +    T P+  A  +GF + +  
Sbjct: 65  LHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 56.3 bits (137), Expect = 8e-10
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 61  IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
           +E  A              L  AA RG    V+ LL  GAN    N   + P++V    G
Sbjct: 1   MEPAAGSSM----EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMG 55

Query: 121 FTNVVR 126
              V  
Sbjct: 56  SARVAE 61

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 89.2 bits (222), Expect = 8e-22
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 6/113 (5%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           + +      L   G+    +  +    L+ A    G  D  + L+  GA V A    ++G
Sbjct: 4   HHHHHHSSGLVPRGSH---MGSDLGKKLLEAARA-GQDDEVRILMANGADVAA--KDKNG 57

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
            TPLH AA+ G    VKLLL  GA+    +   +T  +++   G  ++   ++
Sbjct: 58  STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 8/44 (18%), Positives = 14/44 (31%), Gaps = 3/44 (6%)

Query: 83  AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            +          L+  G++   +  D    L  A   G  + VR
Sbjct: 1   GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVR 41

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 90.5 bits (226), Expect = 1e-21
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 4/116 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G+      L + GA     D  G +P+  A    G  D  K L+E GA V+   P   G
Sbjct: 45  FGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNV--PDGTG 101

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132
             P+H A + G    V  L +  ++    +    TPLE+A  +G  ++V  ++ H+
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGHM 156

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.9 bits (219), Expect = 9e-21
 Identities = 31/111 (27%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 17  YGNVEGIKALC-RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
            G+V+ ++ L  R+    + +++ GKT L       G   +A  L++ GA  +       
Sbjct: 12  RGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF--GSTAIALELLKQGASPNV--QDTS 67

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           G +P+H AA+ G   T+K+L+ +GA+  V +     P+ +A  +G T VV 
Sbjct: 68  GTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.7 bits (159), Expect = 9e-13
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 40  GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
               L  A     + +V + L       DA    R G T L              LL  G
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDA--LNRFGKTALQVMMFGSTA-IALELLKQG 58

Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVR 126
           A+  V +    +P+  A   GF + ++
Sbjct: 59  ASPNVQDTSGTSPVHDAARTGFLDTLK 85

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 91.0 bits (227), Expect = 1e-21
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G    ++ L   GA +  +++   TPL  A  + G  D+ + L++  A ++A     HG
Sbjct: 49  EGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINA--VNEHG 105

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
             PLH+A   G ++  + L++ GA   + N   + P++ A+A     +    E  
Sbjct: 106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 9/106 (8%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           +G+ + ++ L +  A +  +++ G  PL  AC   G   VA+ L+  GA V      ++G
Sbjct: 82  HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFW-GQDQVAEDLVANGALVSI--CNKYG 138

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT 122
             P+  A     E   +     G N   LN   + P +    KG T
Sbjct: 139 EMPVDKAKAPLRELLRERAEKMGQN---LN---RIPYKDTFWKGTT 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 74.4 bits (184), Expect = 7e-16
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 4/91 (4%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGA-KVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
             E    +   C   G     +  ++     ++      HG +PLH A + G    V++L
Sbjct: 2   SPEFMDDIFTQCRE-GNAVAVRLWLDNTENDLNQ--GDDHGFSPLHWACREGRSAVVEML 58

Query: 96  LSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           +  GA   V+N    TPL +A + G  ++V+
Sbjct: 59  IMRGARINVMNRGDDTPLHLAASHGHRDIVQ 89

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 89.4 bits (223), Expect = 1e-21
 Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G VE ++ L   GA    +++ G+ P+    M  G   VA+ L+  GA+ +        
Sbjct: 22  RGQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNC--ADPAT 77

Query: 77  GT-PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            T P+H AA+ G   T+ +L   GA   V +   + P+++A  +G  ++ R
Sbjct: 78  LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 80.9 bits (201), Expect = 2e-18
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 5/98 (5%)

Query: 30  GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLE 89
             G+  +       L  A    G  +  + L+E GA  +A    R G  P+        +
Sbjct: 2   SPGIHMLGGSSDAGLATAAAR-GQVETVRQLLEAGADPNA--LNRFGRRPIQVMMMGSAQ 58

Query: 90  RTVKLLLSYGANALVLNDDCQT-PLEVARAKGFTNVVR 126
              +LLL +GA     +    T P+  A  +GF + + 
Sbjct: 59  -VAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLV 95

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 76.7 bits (190), Expect = 5e-17
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKT-PLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
            G+ +  + L   GA     D    T P+  A    G  D    L   GA++D       
Sbjct: 54  MGSAQVAELLLLHGAEPNCADPATLTRPVHDAARE-GFLDTLVVLHRAGARLDV--CDAW 110

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGAN 101
           G  P+  A ++G     + L +   +
Sbjct: 111 GRLPVDLAEEQGHRDIARYLHAATGD 136

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 92.5 bits (231), Expect = 1e-21
 Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           Y +V+ +K L   G+ +   D E    L  A  + G  D+A+ L+     + A     HG
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS-GCVDIAEILLAAKCDLHA--VNIHG 177

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            +PLH AA+      V L LS  ++  + N + +TPL+ A          
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSAL 227

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 85.2 bits (212), Expect = 5e-19
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK-VDA 69
           L +     ++E +K L + GA ++  D EG T L  A    G Y+V + L+  G   V+ 
Sbjct: 48  LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNC 106

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                 G TP+  A +      VKLLLS G++  + +++    L  A   G  ++  
Sbjct: 107 --QDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAE 161

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 84.4 bits (210), Expect = 8e-19
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 8/113 (7%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G+V+    L + GA ++   ++ +TPL+ A  N    +  K LI+ GA VD       G
Sbjct: 21  AGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKAGALVDP--KDAEG 77

Query: 77  GTPLHHAAKRGLERTVKLLLSYGA---NALVLNDDCQTPLEVARAKGFTNVVR 126
            T LH AAK+G    V+ LLS G    N    +D   TP+  A      ++V+
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNC--QDDGGWTPMIWATEYKHVDLVK 128

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.1 bits (204), Expect = 5e-18
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
            +  ++PL AA    G  D+   L++ GA +D         TPL  AA+      VK L+
Sbjct: 8   HQNKRSPLHAAAEA-GHVDICHMLVQAGANIDT--CSEDQRTPLMEAAENNHLEAVKYLI 64

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
             GA     + +  T L +A  KG   VV+
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQ 94

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 76.3 bits (189), Expect = 6e-16
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 3/86 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G V+  + L      L  ++  G +PL  A      YD     +   + V      + G
Sbjct: 154 SGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE-NRYDCVVLFLSRDSDVTL--KNKEG 210

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANA 102
            TPL  A+      +   +     ++
Sbjct: 211 ETPLQCASLNSQVWSALQMSKALQDS 236

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 88.2 bits (220), Expect = 8e-21
 Identities = 40/109 (36%), Positives = 56/109 (51%), Gaps = 4/109 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           Y  V  ++ L + GA +   DK G  PL  AC   G Y+VA+ L++ GA V+        
Sbjct: 52  YNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNV--ADLWK 108

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
            TPLH AA +G     KLLL +GA+    N D  TPL++    G T++ 
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV-KDGDTDIQ 156

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 71.7 bits (177), Expect = 5e-15
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 36  IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
            + E    L+ A    G  +  K L  + + V+         TPLH AA       V+ L
Sbjct: 4   GNSEADRQLLEAAKA-GDVETVKKLCTVQS-VNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

Query: 96  LSYGANALVLNDDCQTPLEVARAKGFTNVV 125
           L +GA+    +     PL  A + G   V 
Sbjct: 62  LQHGADVHAKDKGGLVPLHNACSYGHYEVA 91

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.0 bits (170), Expect = 5e-14
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 4/86 (4%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
            +YG+ E  + L + GA +   D    TPL  A    G Y++ K L++ GA        R
Sbjct: 83  CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAK-GKYEICKLLLQHGADPTK--KNR 139

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGA 100
            G TPL        +    LL    A
Sbjct: 140 DGNTPLDLVKDGDTD-IQDLLRGDAA 164

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 89.8 bits (224), Expect = 1e-20
 Identities = 38/113 (33%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 15  VNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPG 73
           VN    E ++ L   GA ++ +D K G++PLI A  N     + + L++ GA V+A    
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN-NSLSMVQLLLQHGANVNA--QM 180

Query: 74  RHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
             G + LH A+ RGL   V+ L+  GA++ + N    TPL VAR++   +++R
Sbjct: 181 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.4 bits (210), Expect = 9e-19
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 11/118 (9%)

Query: 17  YGNVEGIKALCRD----GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP 72
            GN+  +  L       G  L+  +   +TPL  A +   L  V + L+  GA   A   
Sbjct: 19  QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMA--L 75

Query: 73  GRHGGTPLHHAAKRGLERTVKLLLSYGANALVL----NDDCQTPLEVARAKGFTNVVR 126
            RHG T  H A +      ++ LL   A   +     N D  T L VA        V+
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 83.3 bits (207), Expect = 3e-18
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 7/94 (7%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIEL----GAKVDAYRPGRHGGTPLHHAAKRGLERTV 92
           D++G TPL  A +  G       L+ L    G ++D Y       TPLH A    L   V
Sbjct: 6   DEDGDTPLHIAVVQ-GNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVV 62

Query: 93  KLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           +LL++ GA+ + L+   QT   +A        +R
Sbjct: 63  RLLVTAGASPMALDRHGQTAAHLACEHRSPTCLR 96

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 80.6 bits (200), Expect = 2e-17
 Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
           V   ++  ++ L + GA +      G + L +A    GL  + +TL+  GA         
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR-GLLPLVRTLVRSGADSSL--KNC 214

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGAN 101
           H  TPL  A  R +   ++   +  A+
Sbjct: 215 HNDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 78.6 bits (195), Expect = 8e-17
 Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK--VDAYRP 72
           V       ++ L   GA    +D+ G+T    AC +       + L++  A   +D    
Sbjct: 54  VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEAR 112

Query: 73  GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN----DDCQTPLEVARAKGFTNVVR 126
              G T LH A     + TV+LLL  GA+   ++       ++PL  A      ++V+
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIKSGRSPLIHAVENNSLSMVQ 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 91.4 bits (228), Expect = 2e-20
 Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
             Y  V  ++ L + GA +   DK G  PL  AC   G Y+V + L++ GA V+A     
Sbjct: 66  AGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY-GHYEVTELLLKHGACVNA--MDL 122

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
              TPLH AA +       LLLS+GA+  ++N   ++ +++A        +
Sbjct: 123 WQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 90.2 bits (225), Expect = 5e-20
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 3/100 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
               +  + L R GA +   +K+  TPL  A       DV + L + GAK++A      G
Sbjct: 224 PKRKQVAELLLRKGANVNEKNKDFMTPLHVAAER-AHNDVMEVLHKHGAKMNA--LDSLG 280

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
            T LH AA  G  +T +LLLSYG++  +++    T  ++ 
Sbjct: 281 QTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.0 bits (214), Expect = 2e-18
 Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 17  YGNVEGI-KALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
            GN E +   L          D    TPL  A        + + L++ GA V A    + 
Sbjct: 34  SGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY-NRVRIVQLLLQHGADVHA--KDKG 90

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           G  PLH+A   G     +LLL +GA    ++    TPL  A +K    V  
Sbjct: 91  GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCS 141

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 83.7 bits (208), Expect = 8e-18
 Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 4/112 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN--PGLYDVAKTLIELGAKVDAYRPGR 74
             ++  +K             +  +T L  A  +  P    VA+ L+  GA V+     +
Sbjct: 188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE--KNK 245

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
              TPLH AA+R     +++L  +GA    L+   QT L  A   G     R
Sbjct: 246 DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCR 297

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.3 bits (194), Expect = 5e-16
 Identities = 27/111 (24%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 16  NYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
            +G       L    A      +  K  L+ A  +     +   L  L     A      
Sbjct: 2   EFGKS--ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA--SDGR 57

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
             TPLH AA     R V+LLL +GA+    +     PL  A + G   V  
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE 108

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.8 bits (172), Expect = 3e-13
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
             + + ++ L + GA +  +D  G+T L  A +  G     + L+  G+          G
Sbjct: 257 RAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA-GHLQTCRLLLSYGSDPSI--ISLQG 313

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLND-DCQTPLEVARAKG 120
            T      +      V+ +LS       +   D    L  A   G
Sbjct: 314 FTAAQMGNE-----AVQQILSESTP---MRTSDVDYRLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 22/119 (18%), Positives = 35/119 (29%), Gaps = 15/119 (12%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L++  +   VE    L   GA    ++  GK+ +  A     L +      +        
Sbjct: 128 LHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP-ELRERLTYEFK-------- 178

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
                 G  L  AA+      VK  L+            +T L  A A       +  E
Sbjct: 179 ------GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAE 231

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 10/77 (12%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L++    G+++  + L   G+    I  +G T            +  + ++     +   
Sbjct: 284 LHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN------EAVQQILSESTPMRT- 336

Query: 71  RPGRHGGTPLHHAAKRG 87
                    L  A+K G
Sbjct: 337 ---SDVDYRLLEASKAG 350

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 2/117 (1%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
                      E           LE  + +G TPL  A ++    ++ + L + GA ++ 
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIH-KDAEMVRLLRDAGADLNK 186

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                 G TPLH A +      ++LLL  GA+        +TPL  A  +    + R
Sbjct: 187 -PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 88.4 bits (220), Expect = 9e-20
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 4/110 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKE-GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
           + + E ++ L   GA L   +   G+TPL  A        V + L++ GA   A      
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA-QAASVLELLLKAGADPTA--RMYG 224

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
           G TPL  A  R      +LL ++GA       D  +P   + +   ++  
Sbjct: 225 GRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNR 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 83.7 bits (208), Expect = 3e-18
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 33  LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK---VDAYRPGRHGGTPLHHAAKRGLE 89
             ++ ++G T L  A ++         L+   A    +D       G T LH AA  G  
Sbjct: 2   FGYVTEDGDTALHLAVIH-QHEPFLDFLLGFSAGHEYLDL--QNDLGQTALHLAAILGEA 58

Query: 90  RTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            TV+ L + GA  LV      T L +A          
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCAC 95

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 17  YGNVEGIKALCRDGAGLEWI---DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPG 73
           + +   +  L    AG E++   +  G+T L  A +  G     + L   GA V      
Sbjct: 19  HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLV--AE 75

Query: 74  RHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAK 119
           R G T LH A +        +LL    +      D           
Sbjct: 76  RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.7 bits (169), Expect = 4e-13
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 3/83 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
                 ++ L + GA        G+TPL +A +      +A+ L   GA       G   
Sbjct: 202 AQAASVLELLLKAGADPTARMYGGRTPLGSALLR-PNPILARLLRAHGAPEPE--DGGDK 258

Query: 77  GTPLHHAAKRGLERTVKLLLSYG 99
            +P   +              Y 
Sbjct: 259 LSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 20/124 (16%), Positives = 33/124 (26%), Gaps = 16/124 (12%)

Query: 17  YGNVEGIKALCRDGA-------------GLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL 63
                    L +                  +        P           +      + 
Sbjct: 88  VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDW 147

Query: 64  GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDC-QTPLEVARAKGFT 122
             +++A      G TPLH A        V+LL   GA+       C +TPL +A      
Sbjct: 148 RLQLEA--ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAA 205

Query: 123 NVVR 126
           +V+ 
Sbjct: 206 SVLE 209

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 86.7 bits (216), Expect = 2e-20
 Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           YG+    + L R G   +   K  +TPL  A    G  ++ + L++ GA V+A       
Sbjct: 44  YGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GHANIVEVLLKHGADVNA--KDMLK 100

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            T LH A +   +  V+LL+ YGA+    +  C+T  +++   G  ++  
Sbjct: 101 MTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 79.0 bits (196), Expect = 1e-17
 Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 4/116 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA     D  G +PL  A    G +   + L+  G   DA 
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDA- 62

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
              +   TPLH AA  G    V++LL +GA+    +    T L  A       VV 
Sbjct: 63  -RTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 72.0 bits (178), Expect = 3e-15
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 39  EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSY 98
           +    L+ A    G  D  + L+  GA          G +PLH AA+ G   T ++LL  
Sbjct: 1   DLGKKLLEAARA-GQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 99  GANALVLNDDCQTPLEVARAKGFTNVV 125
           G +        +TPL +A ++G  N+V
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIV 83

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 61.6 bits (151), Expect = 1e-11
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+   + G+   ++ L + GA +   D    T L  A  +    +V + LI+ GA V   
Sbjct: 71  LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGADVHT- 128

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLL 95
              +   T    +   G E   ++L
Sbjct: 129 -QSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 48.9 bits (118), Expect = 3e-07
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDC--QTPLEVARAKGFTNVVR 126
            G  L  AA+ G +  V++L++ GA       D    +PL +A   G  +   
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAP---FTTDWLGTSPLHLAAQYGHFSTTE 51

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 87.0 bits (217), Expect = 2e-20
 Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 3/110 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G++E ++ L ++GA +  +D  G TPL  A +  G  ++ + L++ GA V+A      G
Sbjct: 57  NGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF-GHLEIVEVLLKNGADVNAN--DMEG 113

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            TPLH AA  G    V++LL  GA+    +   +T  +++   G  ++  
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAE 163

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 86.6 bits (216), Expect = 3e-20
 Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 3/116 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L +    G  + ++ L  +GA +   D  G TPL  A  N G  ++ + L++ GA V+A 
Sbjct: 18  LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNA- 75

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                G TPL  AA  G    V++LL  GA+    + +  TPL +A   G   +V 
Sbjct: 76  -VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVE 130

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.4 bits (179), Expect = 3e-15
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
             +    L+ A    G  D  + L+  GA V+A      G TPLH AA  G    V++LL
Sbjct: 11  GSDLGKKLLEAARA-GRDDEVRILMANGADVNA--EDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
             GA+   ++    TPL +A   G   +V 
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVE 97

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 67.8 bits (167), Expect = 1e-13
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L     +G++E ++ L ++GA +   D EG TPL  A M  G  ++ + L++ GA V+A 
Sbjct: 84  LRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMF-GHLEIVEVLLKNGADVNA- 141

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSY 98
              + G T    +   G E   ++L   
Sbjct: 142 -QDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.6 bits (125), Expect = 5e-08
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 64  GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN 123
           G+    +  G   G  L  AA+ G +  V++L++ GA+    +    TPL +A   G   
Sbjct: 3   GSHHHHHH-GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLE 61

Query: 124 VVR 126
           +V 
Sbjct: 62  IVE 64

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 87.1 bits (217), Expect = 5e-20
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 4/118 (3%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           LL         +  + L      ++ +D EG TPL  A  N    ++AK LI+ GA ++ 
Sbjct: 9   LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDRGADINL 67

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANAL-VLNDDCQTPLEVARAKGFTNVVR 126
                   +P  +A  +G    +  +L +    L   N      L  A  KG  + V+
Sbjct: 68  --QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 81.3 bits (202), Expect = 4e-18
 Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 10/117 (8%)

Query: 17  YGNVEGIKALCRDGAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELG-AKVDAYRPGR 74
            G  E +  + +     L   ++ G   LI A    G  D  K L+E G   +D      
Sbjct: 82  QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK-GHIDNVKLLLEDGREDIDF--QND 138

Query: 75  HGGTPLHHAA-----KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            G T L  A       +  +  VKLL+  GA+  + ++  +T ++ A  KG+T + +
Sbjct: 139 FGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISK 195

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 80.6 bits (200), Expect = 9e-18
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
             E    L AA        V + L +   +VD       G TPL+ A         K L+
Sbjct: 3   TYEVGALLEAANQR-DTKKVKEILQDTTYQVDE--VDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
             GA+  + N    +P   A A+G T ++ 
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILA 89

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 76.3 bits (189), Expect = 3e-16
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
             ++E  KAL   GA +   +    +P + A    G  ++   +++     D  +  R+G
Sbjct: 49  NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHAT-PDLNKHNRYG 106

Query: 77  GTPLHHAAKRGLERTVKLLLSYG-ANALVLNDDCQTPLEVA 116
           G  L  AA++G    VKLLL  G  +    ND   T L  A
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA 147

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 69.4 bits (171), Expect = 7e-14
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 17  YGNVEGIKALCRDG-AGLEWIDKEGKTPLIAACM----NPGLYDVAKTLIELGAKVDAYR 71
            G+++ +K L  DG   +++ +  G T LI A      N    D+ K L+E GA      
Sbjct: 116 KGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI-- 173

Query: 72  PGRHGGTPLHHAAKRGLERTVKLLLSY 98
               G T + +A ++G     K+L  Y
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQY 200

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 89.1 bits (222), Expect = 5e-20
 Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 3/111 (2%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
            + G+ E +  L   GA + + + +G T L  AC++    D+ K L+E GA ++   P  
Sbjct: 48  CSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQ--PDN 104

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
            G  PLH AA  G     + L+S GA+   +N +  TPL++A  +    ++
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELL 155

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 85.2 bits (212), Expect = 1e-18
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 3/109 (2%)

Query: 8   EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
           E    ++      +  + L           K G T L  A    G  +V K LI+    V
Sbjct: 167 EAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK-GYTEVLKLLIQARYDV 225

Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           +       G TPLH AA  G E   ++L+    +   +N   QT  +VA
Sbjct: 226 NI--KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVA 272

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 24/110 (21%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G+   ++         +    +G   L A     G  +    L+E GA ++       G
Sbjct: 18  IGSETDLEPPVVKRKKTKVKFDDGAVFLAACSS--GDTEEVLRLLERGADINY--ANVDG 73

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            T LH A        VK L+  GAN    +++   PL  A + G+ ++  
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAE 123

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 77.5 bits (192), Expect = 5e-16
 Identities = 31/136 (22%), Positives = 45/136 (33%), Gaps = 28/136 (20%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN-------------------------- 50
            G ++  + L   GA +  ++ EG TPL  A                             
Sbjct: 116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEER 175

Query: 51  PGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQ 110
             L D  + L             + GGT LH AA +G    +KLL+    +  + + D  
Sbjct: 176 IMLRDARQWLNSGHINDVR--HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW 233

Query: 111 TPLEVARAKGFTNVVR 126
           TPL  A   G     R
Sbjct: 234 TPLHAAAHWGKEEACR 249

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 75.6 bits (187), Expect = 2e-15
 Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 9/121 (7%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+Q     NV+ +K L  +GA +   D EG  PL AA    G  D+A+ LI  GA V A 
Sbjct: 77  LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGA- 134

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
                G TPL  A +  +E  ++  ++          D +   +        +  + + +
Sbjct: 135 -VNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRDARQWLNS 187

Query: 131 H 131
            
Sbjct: 188 G 188

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 68.7 bits (169), Expect = 5e-13
 Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 4/90 (4%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
           D + K          G     +  +    K          G     A   G    V  LL
Sbjct: 5   DAKQKRNEQLKRWI-GSETDLEPPVVKRKKTKV---KFDDGAVFLAACSSGDTEEVLRLL 60

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
             GA+    N D  T L  A      ++V+
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVK 90

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.0 bits (162), Expect = 3e-12
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G  E +K L +    +   D +G TPL AA    G  +  + L+E    ++A    + G
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW-GKEEACRILVENLCDMEA--VNKVG 265

Query: 77  GTPLHHAAKRGLERTVKLLLSYGAN 101
            T    A +  L    +L       
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNLL 290

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 84.4 bits (210), Expect = 6e-20
 Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 3/97 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G+ E +K L   GA +    K+G TPL  A  N G  ++ K L+  GA V+A    + G
Sbjct: 19  NGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNA--RSKDG 75

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPL 113
            TP H A K G    VKLL + GA+    +       
Sbjct: 76  NTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 81.3 bits (202), Expect = 7e-19
 Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 32  GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERT 91
           G  W  K+G TPL  A  N G  +  K L+  GA V+A    + G TPLH AAK G    
Sbjct: 1   GHMWGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNA--RSKDGNTPLHLAAKNGHAEI 57

Query: 92  VKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           VKLLL+ GA+    + D  TP  +A+  G   +V+
Sbjct: 58  VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVK 92

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 57.4 bits (140), Expect = 2e-10
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G+ E +K L   GA +    K+G TP   A  N G +++ K L   GA V+A       
Sbjct: 52  NGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKN-GHHEIVKLLDAKGADVNA--RSWGS 108

Query: 77  GTPLHH 82
               HH
Sbjct: 109 SHHHHH 114

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 85.5 bits (213), Expect = 7e-20
 Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            GN E  + L   GA  +  D+ G   +  A    G  D  +TL+E  A V+       G
Sbjct: 47  LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNI--EDNEG 103

Query: 77  GTPLHHAAKRGLERTVKLLLSYGA---NALVLNDDCQTPLEVARAKGFTNVV 125
             PLH AAK G  R V+ L+ + A        N    T  ++AR  G   VV
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGH--RNHKGDTACDLARLYGRNEVV 153

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 82.0 bits (204), Expect = 1e-18
 Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G++E + +L ++   +   +  G+T L    +  G  ++A+ L+  GA  D     R G
Sbjct: 15  RGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL--GNPEIARRLLLRGANPDL--KDRTG 70

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
              +H AA+ G   T++ LL + A+  + +++   PL +A  +G   VV 
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVE 120

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 70.9 bits (175), Expect = 8e-15
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 36  IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
           + +     L +A    G  +   +L++    V+A      G T L        E   + L
Sbjct: 1   MAEPWGNELASAAAR-GDLEQLTSLLQNNVNVNA--QNGFGRTALQVMKLGNPE-IARRL 56

Query: 96  LSYGANALVLNDDCQTPLEVARAKGFTNVV 125
           L  GAN  + +      +  A   GF + +
Sbjct: 57  LLRGANPDLKDRTGFAVIHDAARAGFLDTL 86

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 69.7 bits (172), Expect = 2e-14
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK-VDAYRPGRH 75
            G ++ ++ L    A +   D EG  PL  A    G   V + L++  A  V        
Sbjct: 80  AGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGH--RNHK 136

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGA 100
           G T    A   G    V L+ + GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            G  L  AA RG    +  LL    N    N   +T L+V    G   + R
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVM-KLGNPEIAR 54

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 85.1 bits (212), Expect = 2e-19
 Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 3/111 (2%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
           V    +   + L   G+ +   D  GKTPL+ + +  G  +++  L+E GA V+      
Sbjct: 76  VKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIF-GYSEMSYFLLEHGANVND--RNL 132

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
            G TPL  A+K G    VK LL  GA+    +    T    AR  G   V+
Sbjct: 133 EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 79.7 bits (198), Expect = 1e-17
 Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
              +      + +  L        + D   +TPL+ ACM  G+ +    L+E   K++  
Sbjct: 12  EKIKDEKSINQNLDFL------RNYRDSYNRTPLMVACML-GMENAIDKLVENFDKLED- 63

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
                G T L  A K       + LLS G+N    +   +TPL  +   G++ + 
Sbjct: 64  -KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 69.0 bits (170), Expect = 8e-14
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
           + +G  E    L   GA +   + EG+TPLI A    G  ++ K L+ELGA + A     
Sbjct: 109 IIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY-GRSEIVKKLLELGADISAR--DL 165

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGA 100
            G T    A   G +  +K+      
Sbjct: 166 TGLTAEASARIFGRQEVIKIFTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.1 bits (147), Expect = 8e-11
 Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 9/91 (9%)

Query: 36  IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
           +DK G+           +      L              +  TPL  A   G+E  +  L
Sbjct: 4   MDKNGEIVEKIKDEK-SINQNLDFLRNYRDS--------YNRTPLMVACMLGMENAIDKL 54

Query: 96  LSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           +         + +  T L  A       +  
Sbjct: 55  VENFDKLEDKDIEGSTALIWAVKNNRLGIAE 85

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 86.8 bits (216), Expect = 2e-19
 Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 4/116 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
                 ++ L    A +  +D  GK+ L  A       D A  L++ GA  D        
Sbjct: 134 LAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDM--QNNRE 190

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRA-IENH 131
            TPL  AA+ G   T K+LL + AN  + +   + P ++A+ +   ++VR     H
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 83.3 bits (207), Expect = 3e-18
 Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           L+  V+       + L R+ A  L+    +G TPLI A     +  + + LI   A V+A
Sbjct: 94  LHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNA 152

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                 G + LH AA         +LL  GAN  + N+  +TPL +A  +G     +
Sbjct: 153 --VDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAK 207

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.6 bits (200), Expect = 3e-17
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK-VDAYRPGRH 75
           Y   +  K L    A     D  G+TPL AA        V + LI   A  +DA      
Sbjct: 67  YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDA--RMHD 123

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           G TPL  AA+  +E  ++ L++  A+   ++D  ++ L  A A    +   
Sbjct: 124 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 174

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 76.4 bits (189), Expect = 7e-16
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
               NV+    L ++GA  +  +   +TPL  A    G Y+ AK L++  A  D      
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDI--TDH 221

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGAN 101
               P   A +R     V+LL     +
Sbjct: 222 MDRLPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 75.2 bits (186), Expect = 2e-15
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 13/102 (12%)

Query: 37  DKEGKTPLIAACMNPGLY------------DVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84
             +G TPL+ A  + G               V    I  GA +      R G T LH AA
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQT-DRTGETALHLAA 65

Query: 85  KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           +       K LL   A+A + ++  +TPL  A +     V +
Sbjct: 66  RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 82.8 bits (206), Expect = 3e-19
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 3/112 (2%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
              G  + ++ L  +GA +   D+ G TPL  A  + G  ++ + L++ GA V+A     
Sbjct: 22  ARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNA--VDA 78

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            G TPLH AA  G     ++LL +GA+    +   +T  +++   G  ++  
Sbjct: 79  IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAE 130

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.4 bits (166), Expect = 9e-14
 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           LY    +G++E ++ L ++GA +  +D  G TPL  A    G  ++A+ L++ GA V+A 
Sbjct: 51  LYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI-GHLEIAEVLLKHGADVNA- 108

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSY 98
              + G T    +   G E   ++L   
Sbjct: 109 -QDKFGKTAFDISIGNGNEDLAEILQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 49.7 bits (120), Expect = 1e-07
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 64  GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN 123
           G+    +  G   G  L  AA+ G +  V++L++ GA+    ++   TPL +A A G   
Sbjct: 3   GSHHHHHH-GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLE 61

Query: 124 VV 125
           +V
Sbjct: 62  IV 63

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.0 bits (211), Expect = 6e-19
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 2/111 (1%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+  V  G+ E +K L + G  +   D +G TPL  A        V K L+E GA V A 
Sbjct: 74  LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASC-NNVQVCKFLVESGAAVFAM 132

Query: 71  -RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
                          + G  +  + L        ++N      L     + 
Sbjct: 133 TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQN 183

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 79.2 bits (196), Expect = 6e-17
 Identities = 17/90 (18%), Positives = 30/90 (33%), Gaps = 4/90 (4%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
           +  G+  L        L       I  G +V            L  ++  G    V+ ++
Sbjct: 2   EITGQVSLPPGKRT-NLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRII 57

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
               +  + ND+  T L  A   G T +V+
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVK 87

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 77.3 bits (191), Expect = 2e-16
 Identities = 26/126 (20%), Positives = 46/126 (36%), Gaps = 5/126 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L         +        G  ++  +      L+ + +  G +D+ + +I         
Sbjct: 9   LPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLE-GEFDLVQRIIYEVDDPSL- 65

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRA-IE 129
            P   G T LH+A   G    VK L+ +G N    + D  TPL  A +     V +  +E
Sbjct: 66  -PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124

Query: 130 NHICIF 135
           +   +F
Sbjct: 125 SGAAVF 130

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 72  PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           P   G   L    +  L +T    +++G      N      L  +  +G  ++V+
Sbjct: 1   PEITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQ 54

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 84.4 bits (210), Expect = 8e-19
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
                   ++ L    A +  +D  GK+ L  A       D A  L++ GA  D      
Sbjct: 100 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDM--QNN 156

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
              TPL  AA+ G   T K+LL + AN  + +   + P ++A+ +   ++VR
Sbjct: 157 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVR 208

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 80.1 bits (199), Expect = 2e-17
 Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 4/111 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK-VDAYRPGRH 75
           Y   +  K L    A     D  G+TPL AA        V + LI   A  +DA      
Sbjct: 35  YSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDA--RMHD 91

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           G TPL  AA+  +E  ++ L++  A+   ++D  ++ L  A A    +   
Sbjct: 92  GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.1 bits (191), Expect = 2e-16
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
           D+ G+T L  A       D AK L+E  A  +       G TPLH A     +   ++L+
Sbjct: 22  DRTGETALHLAARY-SRSDAAKRLLEASADANI--QDNMGRTPLHAAVSADAQGVFQILI 78

Query: 97  SYGA---NALVLNDDCQTPLEVARAKGFTNVV 125
              A   +A     D  TPL +A       ++
Sbjct: 79  RNRATDLDA--RMHDGTTPLILAARLAVEGML 108

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 76.7 bits (190), Expect = 3e-16
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 3/85 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
             NV+    L ++GA  +  +   +TPL  A    G Y+ AK L++  A  D        
Sbjct: 135 VNNVDAAVVLLKNGANKDMQNNREETPLFLAARE-GSYETAKVLLDHFANRDI--TDHMD 191

Query: 77  GTPLHHAAKRGLERTVKLLLSYGAN 101
             P   A +R     V+LL  Y   
Sbjct: 192 RLPRDIAQERMHHDIVRLLDEYNLV 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.7 bits (151), Expect = 5e-11
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 55  DVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLE 114
            V    I  GA +      R G T LH AA+       K LL   A+A + ++  +TPL 
Sbjct: 5   AVISDFIYQGASLHNQT-DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLH 63

Query: 115 VARAKGFTNVVR 126
            A +     V +
Sbjct: 64  AAVSADAQGVFQ 75

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 84.2 bits (209), Expect = 8e-19
 Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 6/125 (4%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           LL      G +E ++   ++       ++EG T L  A      Y +   LI  GA V++
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNS 82

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLND-DCQTPLEVARA--KGFTNVVR 126
             P  HG TPLH AA          L+ +GA        D  T  E      +G+ +   
Sbjct: 83  --PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140

Query: 127 AIENH 131
            + + 
Sbjct: 141 YLADV 145

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 76.5 bits (189), Expect = 4e-16
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 23  IKALCRDGAGLEWIDKE---GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTP 79
           ++++ R         +        L+ A +  G  +V +  ++         P   G T 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALT-GELEVVQQAVKEMNDPSQ--PNEEGITA 57

Query: 80  LHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           LH+A        V  L++ GAN    +    TPL  A +   T +  
Sbjct: 58  LHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICM 104

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.8 bits (182), Expect = 4e-15
 Identities = 16/111 (14%), Positives = 28/111 (25%), Gaps = 5/111 (4%)

Query: 17  YGNVEGIKALCRDGAGLEWID-KEGKTPL-IAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
             +     AL + GA +      +G T          G  D A  L ++   +       
Sbjct: 97  CNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGL--MNS 154

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
                L   +    +  +          L  +   +T    A   G    V
Sbjct: 155 GAVYALWDYSAEFGD-ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 84.5 bits (210), Expect = 8e-19
 Identities = 27/116 (23%), Positives = 48/116 (41%), Gaps = 8/116 (6%)

Query: 17  YGNVEGIKALCRDGA------GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
            G +  +  L +          L+  +  G T L  A ++ G   + + L+ LGA V+A 
Sbjct: 88  QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH-GYLGIVELLVSLGADVNA- 145

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           +   +G T LH A        V LLL  GA+   +     +P ++   +  T + +
Sbjct: 146 QEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQ 201

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 84.5 bits (210), Expect = 9e-19
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 9/113 (7%)

Query: 20  VEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTP 79
           +E I+ +  D A L + +   +TPL  A +     ++A+ L+  G   +       G TP
Sbjct: 25  MEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPEL--RDFRGNTP 81

Query: 80  LHHAAKRGLERTVKLLLSYGANALVL------NDDCQTPLEVARAKGFTNVVR 126
           LH A ++G   +V +L        +       N +  T L +A   G+  +V 
Sbjct: 82  LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.3 bits (199), Expect = 3e-17
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 4/112 (3%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDK-EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPG 73
             +G +  ++ L   GA +   +   G+T L  A       D+   L++ GA V+     
Sbjct: 125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL-QNPDLVSLLLKCGADVNR--VT 181

Query: 74  RHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
             G +P      R   R  + L       L +  + +          FT   
Sbjct: 182 YQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 79.9 bits (198), Expect = 3e-17
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 5/94 (5%)

Query: 36  IDKEGKTPLIAACMN---PGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTV 92
           + ++G + L  A ++       +V + +    A ++         TPLH A         
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ--NNLQQTPLHLAVITNQPEIA 61

Query: 93  KLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           + LL  G +  + +    TPL +A  +G    V 
Sbjct: 62  EALLGAGCDPELRDFRGNTPLHLACEQGCLASVG 95

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 73.7 bits (182), Expect = 4e-15
 Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 12/120 (10%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR--- 71
           V     E  +AL   G   E  D  G TPL  AC   G       L +       +    
Sbjct: 53  VITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILK 111

Query: 72  -PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN----DDCQTPLEVARAKGFTNVVR 126
               +G T LH A+  G    V+LL+S GA+   +N     + +T L +A      ++V 
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQEPCNGRTALHLAVDLQNPDLVS 168

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 85.2 bits (212), Expect = 1e-18
 Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 13/122 (10%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
           V     + ++ L R GA      K G TP + A +  G   + K  +  GA V+      
Sbjct: 47  VQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVNE--CDF 103

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGAN----------ALVLNDDCQTPLEVARAKGFTNV 124
           +G T    AA  G  + +K L   GAN             L     T L  A  KG   V
Sbjct: 104 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 163

Query: 125 VR 126
           ++
Sbjct: 164 LK 165

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 83.7 bits (208), Expect = 3e-18
 Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKE-GKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           L + V   +V+ ++ L   GA + + ++E G TPL  A       D+ + L+  GA    
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVL 67

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
               ++G TP   AA  G  + +KL LS GA+    +    T    A   G    ++
Sbjct: 68  --RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.1 bits (204), Expect = 1e-17
 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 10/121 (8%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA------- 69
            G+V+ +K     GA +   D  G T  + A +  G     K L + GA V+        
Sbjct: 82  AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKED 140

Query: 70  -YRPGRHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRA 127
             R  + G T L  AA++G    +K+LL   GA+    ++  +  L  A      + V A
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 128 I 128
           I
Sbjct: 201 I 201

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
             E    LI A  N    D+ + L+E GA V+  +    G TPLH+A +   E  V+LLL
Sbjct: 2   AVEDNHLLIKAVQN-EDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            +GA+ ++   +  TP  +A   G   +++
Sbjct: 60  RHGADPVLRKKNGATPFLLAAIAGSVKLLK 89

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.8 bits (198), Expect = 7e-17
 Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 17  YGNVEGIKAL-CRDGAGLEWIDKEGKTPLIAACMN---PGLYDVAKTLIELGAKVDAYRP 72
            G+VE +K L    GA +   D  G+  LI A ++     +  +   L++ GA V+    
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV--R 215

Query: 73  GRHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVR 126
           G  G TPL  A ++     V+ LL          + D +T L +A       +  
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 9/115 (7%)

Query: 23  IKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGAKVDAYRPGRHGGTPLH 81
           +    +     E + K G T L+ A    G  +V K L+ E+GA V+A      G   L 
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNA--CDNMGRNALI 187

Query: 82  HAAKRG----LERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRA-IENH 131
           HA        +E    LLL +GA+  V  +  +TPL +A  K    +V+  +E  
Sbjct: 188 HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE 242

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 6e-14
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 30  GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIE-LGAKVDAYRPGRHGGTPLHHAAKRGL 88
           GA +    + GKTPLI A        + + L+E    +++       G T L  A +  L
Sbjct: 209 GADVNVRGERGKTPLILAVEK-KHLGLVQRLLEQEHIEIND--TDSDGKTALLLAVELKL 265

Query: 89  ERTVKLLLSYGAN 101
           ++  +LL   GA+
Sbjct: 266 KKIAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.4 bits (119), Expect = 1e-06
 Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 15  VNYGNVEGIKAL-CRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           V   ++  ++ L  ++   +   D +GKT L+ A     L  +A+ L + GA  D 
Sbjct: 227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL-KLKKIAELLCKRGASTDC 281

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 83.0 bits (205), Expect = 2e-18
 Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 3/122 (2%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           +     +    E  + +  D +     D++ +T L  AC   G  ++ + L++LG  V+ 
Sbjct: 10  ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVND 68

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
                 G +PLH AA  G +  VK LL  GA+   +N +  TPL  A +K    +   + 
Sbjct: 69  --KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126

Query: 130 NH 131
             
Sbjct: 127 EG 128

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 75.3 bits (185), Expect = 1e-15
 Identities = 35/121 (28%), Positives = 57/121 (47%), Gaps = 3/121 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+   + G+ E ++ L + G  +   D  G +PL  A    G  ++ K L+  GA V+A 
Sbjct: 44  LHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GXDEIVKALLVKGAHVNA- 101

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
              ++G TPLH+AA +       +LL  GAN    +    T +  A AKG   +V  +  
Sbjct: 102 -VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 131 H 131
           +
Sbjct: 161 Y 161

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 3/92 (3%)

Query: 40  GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
                  A     L ++ + ++   +        +   T LH A   G    V+ LL  G
Sbjct: 7   NIMICNLAYSG-KLDELKERILADKSLATR--TDQDSRTALHWACSAGHTEIVEFLLQLG 63

Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
                 +D   +PL +A + G   +V+A+   
Sbjct: 64  VPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+   + G  E +KAL   GA +  +++ G TPL  A      +++A  L+E GA  DA 
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDA- 134

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
               +  T +H AA +G  + V +LL Y A+  + + +  TPL +A  +      + +  
Sbjct: 135 -KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193

Query: 131 H 131
            
Sbjct: 194 Q 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 5/116 (4%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+   +    E    L   GA  +  D    T +  A    G   +   L+   A  +  
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK-GNLKMVHILLFYKASTNI- 167

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                G TPLH A         K L++ GA+  + N + +TPL+V  AKG   ++ 
Sbjct: 168 -QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV--AKGGLGLIL 220

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.3 bits (141), Expect = 6e-10
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           +++    GN++ +  L    A     D EG TPL  AC      + AK L+  GA +   
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDE-ERVEEAKFLVTQGASIYI- 200

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
              +   TPL  A   G    +   L+ G  
Sbjct: 201 -ENKEEKTPLQVAK--GGLGLILKRLAEGEE 228

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.9 bits (196), Expect = 2e-18
 Identities = 37/87 (42%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 40  GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
           G+TPL  A  N G  +V K L+E GA V+A    ++G TPLH AA+ G    VKLLL  G
Sbjct: 2   GRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVR 126
           A+    + + +TPL +A   G   VV+
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVK 85

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.6 bits (195), Expect = 3e-18
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 3/84 (3%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G++E +K L   GA +   DK G+TPL  A  N G  +V K L+E GA V+A    ++G
Sbjct: 12  NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNG 68

Query: 77  GTPLHHAAKRGLERTVKLLLSYGA 100
            TPLH AA+ G    VKLLL  GA
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.5 bits (130), Expect = 2e-09
 Identities = 22/52 (42%), Positives = 30/52 (57%)

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           +G TPLH AA+ G    VKLLL  GA+    + + +TPL +A   G   VV+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVK 52

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.9 bits (211), Expect = 3e-18
 Identities = 24/114 (21%), Positives = 34/114 (29%), Gaps = 11/114 (9%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
            G  + ++ L   G      ++ G T L  AC   G  D AK L  +G          HG
Sbjct: 30  KGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF-GCVDTAKYLASVGEVHSL----WHG 84

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
             P+H A        V  L+             Q P  +        V     +
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEIGSH 132

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.5 bits (210), Expect = 4e-18
 Identities = 22/133 (16%), Positives = 44/133 (33%), Gaps = 21/133 (15%)

Query: 17  YGNVEGIKAL-----CRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR 71
           + N E +  +      +    L++ +K+G + L  A +     DVA   +E+G  V+   
Sbjct: 183 FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI-NWEDVAMRFVEMGIDVNM-- 239

Query: 72  PGRHGGTPLHHAAKRGLERTVKLLLS-------------YGANALVLNDDCQTPLEVARA 118
                  PL+ + +  +    K LL               G   L         +  A  
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299

Query: 119 KGFTNVVRAIENH 131
                V++ ++  
Sbjct: 300 PSKQEVLQLLQEK 312

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 84.5 bits (210), Expect = 5e-18
 Identities = 21/116 (18%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 16  NYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-----GAKVDAY 70
               +E IK L + GA     DK  +TPL+ A       +    +++        ++D  
Sbjct: 149 GPEYLEMIKILVQLGASPTAKDKADETPLMRAMEF-RNREALDLMMDTVPSKSSLRLDY- 206

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
              + G + LH A     E      +  G +  + +++   PL ++       + +
Sbjct: 207 -ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTK 261

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 27/91 (29%), Positives = 34/91 (37%), Gaps = 7/91 (7%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
           D E    +  A    G  D  + LIE G         R G T LH A K G   T K L 
Sbjct: 17  DDENMEKIHVAARK-GQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVDTAKYLA 73

Query: 97  SYGANALVLND-DCQTPLEVARAKGFTNVVR 126
           S G      +    Q P+ +A     T++V 
Sbjct: 74  SVGEVH---SLWHGQKPIHLAVMANKTDLVV 101

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 82.2 bits (204), Expect = 3e-17
 Identities = 16/121 (13%), Positives = 30/121 (24%), Gaps = 12/121 (9%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
               +        G  +   D E   PL  +     +  + K L++            H 
Sbjct: 221 INWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRA-AMVLLTKELLQKTDVFLIQACPYHN 279

Query: 77  G-----------TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
           G             +  AA    +  ++LL       +   +         + K    V 
Sbjct: 280 GTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVK 339

Query: 126 R 126
           R
Sbjct: 340 R 340

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.0 bits (193), Expect = 6e-16
 Identities = 21/122 (17%), Positives = 37/122 (30%), Gaps = 14/122 (11%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
                     E  +       G      +G+T L     + P   ++ K L++LGA   A
Sbjct: 115 ESLLNECDEREVNEI------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSY-----GANALVLNDDCQTPLEVARAKGFTNV 124
               +   TPL  A +      + L++              N    + L  A    + +V
Sbjct: 169 --KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226

Query: 125 VR 126
             
Sbjct: 227 AM 228

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.1 bits (188), Expect = 3e-15
 Identities = 12/99 (12%), Positives = 25/99 (25%), Gaps = 3/99 (3%)

Query: 19  NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT 78
                     +G  +          + AA       +V + L E   +V        G  
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADP-SKQEVLQLLQEKLDEVVR--SLNTGAG 325

Query: 79  PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVAR 117
                 K+      ++ L+  A     +        V++
Sbjct: 326 GAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 13/62 (20%), Positives = 26/62 (41%)

Query: 65  AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNV 124
            K++  +        +H AA++G    V+ L+  G +  + N    T L +A   G  + 
Sbjct: 9   PKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDT 68

Query: 125 VR 126
            +
Sbjct: 69  AK 70

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 85.0 bits (210), Expect = 3e-18
 Identities = 20/120 (16%), Positives = 35/120 (29%), Gaps = 6/120 (5%)

Query: 16  NYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
               ++ +  L      ++ I  E       A  N G   V   L EL            
Sbjct: 104 CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAE 162

Query: 76  GGTPLHHAAKRG-LERTVKLLLSYGAN---ALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
                  AA+ G L   +  L         A++  ++       A  +G  NV+  + + 
Sbjct: 163 NYHAFRLAAENGHLH-VLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 56.1 bits (135), Expect = 1e-08
 Identities = 20/124 (16%), Positives = 32/124 (25%), Gaps = 17/124 (13%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN--PGLYDVAKTLIEL-----GAKV 67
               N +G+  L            +G   L          L D  + L+ +      A  
Sbjct: 258 FKLSNPDGVFDLVTKSEC-----LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT 312

Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRA 127
                       L  A + G +    LLLS  +   VL         +    G  ++   
Sbjct: 313 AT--IPGDANELLRLALRLGNQGACALLLSIPS---VLALTKANNYYINETGGRLDLRAV 367

Query: 128 IENH 131
              H
Sbjct: 368 ALEH 371

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 11/98 (11%), Positives = 27/98 (27%), Gaps = 11/98 (11%)

Query: 9   ELLYQQVNYGNVEGIKALC-----RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL 63
             L ++ +   ++ I+ L      +  A    I  +    L  A    G       L+ +
Sbjct: 283 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL-GNQGACALLLSI 341

Query: 64  GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
            + +             +     G      + L +  +
Sbjct: 342 PSVLAL-----TKANNYYINETGGRLDLRAVALEHHHH 374

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 7e-06
 Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 15/119 (12%)

Query: 17  YGNVEGIKALCRDGAGLEW--IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
            G++  +  LC          I  E       A +  G ++V   L++    +       
Sbjct: 173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY----- 227

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
                  H  + G +     +  +      ++D      +++   G  ++V   E    
Sbjct: 228 ----AEIHEFEYGEKYVNPFIARHVNRLKEMHDA----FKLSNPDGVFDLVTKSECLQG 278

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.7 bits (203), Expect = 6e-18
 Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 15  VNYGNVEGIKAL--CRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP 72
            + GN+E +K+L        L  I  +G T L  A      ++V++ LIE GA V     
Sbjct: 80  CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGK-KWFEVSQFLIENGASVRI--K 136

Query: 73  GRHGGTPLHHAAKRGLERTVKLLLSYGANAL-VLNDDCQTPLEVARAKGFTNVVRA-IEN 130
            +    PLH AA  G  + ++LL   G +A+   +    TPL  A A+G  +     +E 
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

Query: 131 H 131
           +
Sbjct: 197 Y 197

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.3 bits (202), Expect = 9e-18
 Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 4/115 (3%)

Query: 15  VNYGNVEGIKALCRDGA---GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR 71
           V++   E    L          ++ D  G TP   AC   G  +V K+L +   K D  +
Sbjct: 44  VSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNK 102

Query: 72  PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
               G T LH A  +      + L+  GA+  + +   Q PL  A + G   ++ 
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIE 157

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.8 bits (198), Expect = 3e-17
 Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 8/124 (6%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG-AKVDA 69
           L+  V     E  + L  +GA +   DK  + PL  A    G   + + L  LG + V+ 
Sbjct: 111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASV-GSLKLIELLCGLGKSAVNW 169

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
               + G TPL HA   G      LL+  YGA   ++++      +VA  +    V +  
Sbjct: 170 --QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFF 224

Query: 129 ENHI 132
            N++
Sbjct: 225 LNNV 228

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.3 bits (194), Expect = 9e-17
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 40  GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
              PL  ACM    + V + L    + +      + G  PLH +           LLS  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 100 AN---ALVLNDDCQTPLEVARAKGFTNVVR 126
            N       +D   TP  +A + G   VV+
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 76.7 bits (190), Expect = 3e-16
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 17  YGNVEGI-KALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY-RPGR 74
                 + + L    + L   D++G+ PL  +      +++   L+     V+    P  
Sbjct: 12  ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDD 70

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALV--LNDDCQTPLEVARAKGFTNVVR 126
            G TP H A   G    VK L        +  + +   T L +A  K +  V +
Sbjct: 71  SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 429 DKDATSSCVICLDAPVEGACV--PCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
            ++    C +C   P +G  +    GH+  C  C   +K     CP+C+  I  VI+++
Sbjct: 3   CQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 78.9 bits (195), Expect = 2e-17
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 18  GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN-----PGLYDVAKTLIELGAKVDAYRP 72
              +    L   GA ++   KEG T              G  ++ K  +E GA + A   
Sbjct: 53  ARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA--L 110

Query: 73  GRHGGTPLHHAAKRGLERTVK-------LLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
            +     +            +       +    G   L+ +    T LE  +       +
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170

Query: 126 RAIENH 131
           + +E++
Sbjct: 171 KMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 25/141 (17%), Positives = 40/141 (28%), Gaps = 12/141 (8%)

Query: 5   QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN---PGLYDVAKTLI 61
            S+   +      G  E    L   G   +         L     N      Y ++  LI
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLI 62

Query: 62  ELGAKVDAYRPGRHGGTPLHHAAKRG------LERTVKLLLSYGANALVLNDDCQTPLEV 115
             GA + +    + G T      + G           K+ L  GA+   L    +  +  
Sbjct: 63  NKGADIKS--RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFK 120

Query: 116 ARAKGFTNVVRAIENHICIFS 136
                F +    I  +  IFS
Sbjct: 121 NIFNYFVDENEMIPLYKLIFS 141

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.9 bits (169), Expect = 8e-14
 Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 10/91 (10%)

Query: 18  GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKT-------LIELGAKVDAY 70
           G  E  K     GA +  + K  K  +     N    D  +          + G ++   
Sbjct: 92  GTTELCKIFLEKGADITALYKPYKIVVFKNIFN-YFVDENEMIPLYKLIFSQSGLQLLI- 149

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
              + G T L    +      +K++  Y   
Sbjct: 150 -KDKWGLTALEFVKRCQKPIALKMMEDYIKK 179

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 26  LCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
             + G  L   DK G T L             K + +   K + 
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRC-QKPIALKMMEDYIKKYNL 182

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 27/111 (24%), Positives = 44/111 (39%), Gaps = 4/111 (3%)

Query: 22  GIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGAKVDAYRPGRHGGTPL 80
           G K      A  +    +G+T L  A        + K L+ E G+  D       G TP+
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQV-SNMPIVKYLVGEKGSNKDK--QDEDGKTPI 317

Query: 81  HHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
             AA+ G    V  L+  GA+   ++    T  ++A+A    N+V   +  
Sbjct: 318 MLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.0 bits (198), Expect = 2e-16
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 6/118 (5%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
                V   K     GA +  +D +  TPL+ A +      +   L++ GA    Y   +
Sbjct: 141 SEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGADPTIY--NK 197

Query: 75  HGGTPLHHAAKRGLERTVKLLLS---YGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
              + LH AA       +  +L+      +   L+ +  T L +       + V + +
Sbjct: 198 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 10/117 (8%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN-------PGLYDVAKTLIELGAKVDA 69
            G+    + + R+   +    +  +T L     N         +   AK  I  GA V+A
Sbjct: 103 AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA 161

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
                   TPL  A      R V  L+  GA+  + N   ++ L  A A     ++ 
Sbjct: 162 --MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMV 216

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 17  YGNVEGIKAL-CRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
             N+  +K L    G+  +  D++GKTP++ A    G  +V   LI+ GA V+A      
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE-GRIEVVMYLIQQGASVEA--VDAT 345

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGAN 101
             T    A        V +       
Sbjct: 346 DHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.8 bits (187), Expect = 4e-15
 Identities = 23/125 (18%), Positives = 39/125 (31%), Gaps = 17/125 (13%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIE---LGAKVDAYR 71
           V       +  L + GA     +K  ++ L  A  N   + +   ++    L   ++   
Sbjct: 174 VLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEE-- 230

Query: 72  PGRHGGTPLHHAAKRG---LERTVKLLLSYGANALVL--------NDDCQTPLEVARAKG 120
             R+G T L   A         + KLL+  GA                 +T L  A    
Sbjct: 231 LDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVS 290

Query: 121 FTNVV 125
              +V
Sbjct: 291 NMPIV 295

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.8 bits (182), Expect = 2e-14
 Identities = 20/123 (16%), Positives = 33/123 (26%), Gaps = 13/123 (10%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
             Q    GN         +       + E    L         Y + + +      +   
Sbjct: 65  NPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGS--YAITEPITRESVNIID- 121

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVL--------NDDCQTPLEVARAKGFT 122
              RH  T LH  A        + L+ + A   +         + D  TPL +A      
Sbjct: 122 --PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 179

Query: 123 NVV 125
            +V
Sbjct: 180 RLV 182

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.1 bits (162), Expect = 6e-12
 Identities = 12/100 (12%), Positives = 20/100 (20%), Gaps = 9/100 (9%)

Query: 36  IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
           +      P      N G   +               P       LH  A        + +
Sbjct: 57  LQHYSLYPNPQGYGN-GNDFLGDFNHTNLQIPTE--PEPESPIKLHTEAAGSYA-ITEPI 112

Query: 96  LSYGANALVLNDDC--QTPLEVARAKGFTNVVRAIENHIC 133
                N   + D    +T L    +         +  H  
Sbjct: 113 TRESVN---IIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 149

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 9/95 (9%), Positives = 20/95 (21%), Gaps = 13/95 (13%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
               +  L+ A  + G     +  ++            +   P       G +       
Sbjct: 34  ITSSQHSLLEASYD-GYIKRQRNELQ-----------HYSLYPNPQGYGNGNDFLGDFNH 81

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           +          +    L    A G   +   I   
Sbjct: 82  TNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRE 115

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVD 68
            G +E +  L + GA +E +D    T    A  N   +++         + +
Sbjct: 323 EGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN-NHHNIVDIFDRCRPERE 373

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 74.5 bits (183), Expect = 5e-17
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 429 DKDATSSCVICLDAPVEGACVP--CGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
             +A   CVIC   P  G  V    GH+  C +C  ++K +   CPVCR  I  ++  Y
Sbjct: 4   PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 75.7 bits (187), Expect = 7e-16
 Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 17/132 (12%)

Query: 15  VNYGNVEGIKALCRDGAGLEWI-----DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
             Y N+E    L      L +        EG+T L  A +N    ++ + L+  GA V A
Sbjct: 45  ALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN-QNVNLVRALLARGASVSA 103

Query: 70  -----------YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA 118
                      +    +G  PL  AA  G E  V+LL+ +GA+    +    T L +   
Sbjct: 104 RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163

Query: 119 KGFTNVVRAIEN 130
           +        + N
Sbjct: 164 QPNKTFACQMYN 175

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 70.3 bits (173), Expect = 5e-14
 Identities = 28/129 (21%), Positives = 44/129 (34%), Gaps = 18/129 (13%)

Query: 15  VNYGNVEGI-KALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP- 72
               +V+ + K L  +G  +      G+T L  A +     + A  L+E   ++      
Sbjct: 11  AKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAPELVFEPMT 69

Query: 73  --GRHGGTPLHHAAKRGLERTVKLLLSYGAN-------------ALVLNDDCQTPLEVAR 117
                G T LH A        V+ LL+ GA+                L    + PL  A 
Sbjct: 70  SELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129

Query: 118 AKGFTNVVR 126
             G   +VR
Sbjct: 130 CVGSEEIVR 138

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.8 bits (169), Expect = 2e-13
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 7/92 (7%)

Query: 40  GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
            ++PL+ A     +  ++K L   G +V     G  G T LH AA         +L+   
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQ--RGAMGETALHIAALYDNLEAAMVLMEAA 60

Query: 100 ANALVLNDDC-----QTPLEVARAKGFTNVVR 126
              +           QT L +A      N+VR
Sbjct: 61  PELVFEPMTSELYEGQTALHIAVINQNVNLVR 92

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.9 bits (164), Expect = 8e-13
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 7/94 (7%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL---YDVAKTLIELGAKVDA-- 69
              G+ E ++ L   GA +   D  G T L    + P       +   L+          
Sbjct: 129 ACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188

Query: 70  --YRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
               P   G TP   A   G     + L+    +
Sbjct: 189 LELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 70.2 bits (172), Expect = 2e-15
 Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 5/74 (6%)

Query: 412 SSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGC 471
           SS S+++   ++ +++  ++    C IC+D  +    VPCGH+  C  C   V      C
Sbjct: 5   SSGSLQKEISTEEQLRRLQEEKL-CKICMDRNIAIVFVPCGHLVTCKQCAEAVDK----C 59

Query: 472 PVCRANISQVIRLY 485
           P+C   I+   +++
Sbjct: 60  PMCYTVITFKQKIF 73

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 69.4 bits (170), Expect = 3e-15
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
           C++C +  +     PCGH   C SC  ++++    CPVCR+ +  V  +Y
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVY 66

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 73.3 bits (180), Expect = 8e-15
 Identities = 30/150 (20%), Positives = 51/150 (34%), Gaps = 32/150 (21%)

Query: 9   ELLYQQVNYGNVEGIKAL----CRDGAGLEWI----DKEGKTPLIAACMNP--GLYDVAK 58
           + L+  V+ G  E +  L      +   L          GKT L+ A +N   G+     
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 59  TLIELGAKVDAYRPG---------RHGGTPLHHAAKRGLERTVKLLLSYGAN-------- 101
            L+++       +P            G + LH A ++   + VKLL+  GA+        
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

Query: 102 -----ALVLNDDCQTPLEVARAKGFTNVVR 126
                        + PL +A      +VV 
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDVVT 153

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 70.6 bits (173), Expect = 7e-14
 Identities = 26/142 (18%), Positives = 43/142 (30%), Gaps = 31/142 (21%)

Query: 17  YGNVEGIKALCRDGA-------------GLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL 63
             +++ +K L  +GA                     G+ PL  A      +DV   L+E 
Sbjct: 100 KRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT-KQWDVVTYLLEN 158

Query: 64  G---AKVDA--------------YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN 106
               A ++A                      + L      GL +    L        + N
Sbjct: 159 PHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISN 218

Query: 107 DDCQTPLEVARAKGFTNVVRAI 128
               TPL++A  +G   + R I
Sbjct: 219 HQGLTPLKLAAKEGKIEIFRHI 240

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 23/126 (18%), Positives = 29/126 (23%), Gaps = 26/126 (20%)

Query: 16  NYGNVEGIKALCRDGAGLEWI-----------DKEGKTPLIAACMNPGLYDVAKTLIELG 64
             G    I  L +                     +G + L  A          K L+E G
Sbjct: 55  QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENG 113

Query: 65  AKVDA-----------YRPGRHGGTPLHHAAKRGLERTVKLLLSYG---ANALVLNDDCQ 110
           A V                   G  PL  AA       V  LL      A+    +    
Sbjct: 114 ADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGN 173

Query: 111 TPLEVA 116
           T L   
Sbjct: 174 TVLHAL 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
           +    + L+    + GL  +   L       +       G TPL  AAK G     + +L
Sbjct: 185 NSPENSALVIHMYD-GLLQMGARLCPTVQLEEI--SNHQGLTPLKLAAKEGKIEIFRHIL 241

Query: 97  SYGAN 101
               +
Sbjct: 242 QREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L   +  G ++    LC      E  + +G TPL  A    G  ++ + +++        
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE-GKIEIFRHILQREFSGA-- 248

Query: 71  RPGRHGGTPLHHAA 84
                     HH  
Sbjct: 249 -------AAHHHHH 255

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.1 bits (177), Expect = 2e-14
 Identities = 32/149 (21%), Positives = 54/149 (36%), Gaps = 33/149 (22%)

Query: 11  LYQQVNYGNVEGIKAL-------CRDGAGLEWIDKE-GKTPLIAACMN--PGLYDVAKTL 60
           ++  V   N + +++L        +     E+ D E GKT L+ A +N   G  D    L
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 61  IELGAKVDAYRPG---------RHGGTPLHHAAKRGLERTVKLLLSYGAN---------- 101
           +++  K D+ +             G T LH A +R     V LL+  GA+          
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF 136

Query: 102 ----ALVLNDDCQTPLEVARAKGFTNVVR 126
                       + PL +A       +V+
Sbjct: 137 KKTKGRPGFYFGELPLSLAACTNQLAIVK 165

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 69.0 bits (169), Expect = 3e-13
 Identities = 26/138 (18%), Positives = 36/138 (26%), Gaps = 27/138 (19%)

Query: 16  NYGNVEGIKALCRDGAGLEWI-----------DKEGKTPLIAACMNPGLYDVAKTLIELG 64
           + G  + I  L       + +             +G+T L  A        +   L+E G
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RNMTLVTLLVENG 124

Query: 65  AKVDA------------YRPGRHGGTPLHHAAKRGLERTVKLLLSYG---ANALVLNDDC 109
           A V A                  G  PL  AA       VK LL      A+    +   
Sbjct: 125 ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVG 184

Query: 110 QTPLEVARAKGFTNVVRA 127
            T L          V   
Sbjct: 185 NTVLHALVEVADNTVDNT 202

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 20/122 (16%), Positives = 31/122 (25%), Gaps = 27/122 (22%)

Query: 17  YGNVEGIKALCRDG---AGLEWIDKEGKTPLIAAC---------------MNPGLYDVAK 58
              +  +K L ++    A +   D  G T L A                 M   +  +  
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217

Query: 59  TLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA 118
            L       +     R G TPL  AA  G    +  +L    +              A  
Sbjct: 218 KLHPTLKLEEI--TNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAAH 268

Query: 119 KG 120
             
Sbjct: 269 HH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 24/143 (16%), Positives = 37/143 (25%), Gaps = 32/143 (22%)

Query: 17  YGNVEGIKALCRDGA--------------GLEWIDKEGKTPLIAACMNPGLYDVAKTLIE 62
             N+  +  L  +GA                      G+ PL  A        + K L++
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT-NQLAIVKFLLQ 169

Query: 63  LGA-KVDAYRPGRHGGTPLHHAAKRG----------------LERTVKLLLSYGANALVL 105
                 D       G T LH   +                  +      L        + 
Sbjct: 170 NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEIT 229

Query: 106 NDDCQTPLEVARAKGFTNVVRAI 128
           N    TPL +A + G   V+  I
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYI 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 71.7 bits (176), Expect = 3e-14
 Identities = 32/152 (21%), Positives = 53/152 (34%), Gaps = 33/152 (21%)

Query: 8   EELLYQQVNYGNVEGIKALC----RDGAGLEWIDKE----GKTPLIAACMN--PGLYDVA 57
             +L+  V+ G+ +G++ L          L   +      GKT L  A +N   G  D  
Sbjct: 6   RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65

Query: 58  KTLIELGAKVDAYRPG---------RHGGTPLHHAAKRGLERTVKLLLSYGAN------- 101
             L+++  K    R             G T LH A +R  +  V+LL+  GA+       
Sbjct: 66  PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125

Query: 102 -------ALVLNDDCQTPLEVARAKGFTNVVR 126
                          + PL +A      ++V 
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVH 157

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 62.9 bits (153), Expect = 3e-11
 Identities = 22/105 (20%), Positives = 29/105 (27%), Gaps = 16/105 (15%)

Query: 31  AGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA------------YRPGRHGGT 78
           +    +   G+T L  A          + L+E GA V A                  G  
Sbjct: 84  SPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGEL 142

Query: 79  PLHHAAKRGLERTVKLLLSYG---ANALVLNDDCQTPLEVARAKG 120
           PL  AA       V  L   G   A+    +    T L    A  
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIA 187

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.1 bits (138), Expect = 2e-09
 Identities = 32/153 (20%), Positives = 48/153 (31%), Gaps = 35/153 (22%)

Query: 15  VNYGNVEGIKALCRDGA--------------GLEWIDKEGKTPL-IAACMNPGLYDVAKT 59
           +       ++ L   GA                      G+ PL +AAC N     +   
Sbjct: 101 IERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN--QPHIVHY 158

Query: 60  LIELGA-KVDAYRPGRHGGTPLHHAA---------KRGLERTVKLLLSYGAN-------A 102
           L E G  + D  R    G T LH             + + +   LLL   A         
Sbjct: 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLE 218

Query: 103 LVLNDDCQTPLEVARAKGFTNVVRA-IENHICI 134
            +LN+D  +PL +A   G   + +  I   I  
Sbjct: 219 ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 9   ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVD 68
           + + +  +   ++  K L  D      ++ +G +PL+ A    G   + + +I       
Sbjct: 195 KFVTKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKT-GKIGIFQHIIRREIADA 252

Query: 69  AYRPGRHGGTPLHH 82
           A           HH
Sbjct: 253 AAH------HHHHH 260

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 66.0 bits (161), Expect = 5e-14
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 424 SKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIR 483
           S V+  ++ +  CV+C +  V    +PC H   C  C+   +     CP+CR  + +   
Sbjct: 6   SGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQ----CPMCRQFVQESFA 61

Query: 484 LY 485
           L 
Sbjct: 62  LS 63

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 65.4 bits (157), Expect = 1e-11
 Identities = 27/178 (15%), Positives = 51/178 (28%), Gaps = 4/178 (2%)

Query: 308 ETPICDPQPSSGATAASTSWNNSGQGASAAPSPSKASSSQWVMHEARLSGHSSQQTQIQN 367
           E           +   S    N                +    +      H   + + Q 
Sbjct: 170 EEEKEKQAEEMASDDLSLIRKNRMALFQQLTCVLPILDNLLKANVINKQEHDIIKQKTQI 229

Query: 368 NNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSIDVGPVDVSSPSIEQLPCSKSKVK 427
                       +    +A    + + E     Y ++ V       P+ +    S  +  
Sbjct: 230 PLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQL 289

Query: 428 GDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
                  +C +C+D  V    +PCGH+  C  C   ++     CP+CR  I   +R +
Sbjct: 290 RRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRK----CPICRGIIKGTVRTF 343

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 10/136 (7%)

Query: 6   SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDK------EGKTPLIAACM--NPGLYDVA 57
           +K   L + V   ++ G+     DG  L             +T L  A    +     + 
Sbjct: 129 AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 188

Query: 58  KTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVAR 117
             L++    +D       G T LH+         +KLLL   A+  + N+  +TPL++A+
Sbjct: 189 DFLVQNSGNLDKQTG--KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246

Query: 118 AKGFTNVVRAIENHIC 133
                +    +   + 
Sbjct: 247 RLKHEHCEELLTQALS 262

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 3/94 (3%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           L  + V+  ++  +  L ++   L+    +G T L   C+     +  K L+   A ++ 
Sbjct: 175 LAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLT-DNAECLKLLLRGKASIEI 233

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANAL 103
                 G TPL  A +   E   +LL    +   
Sbjct: 234 --ANESGETPLDIAKRLKHEHCEELLTQALSGRF 265

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.1 bits (153), Expect = 4e-11
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 2/114 (1%)

Query: 4   QQSKEELLYQQVNYGNV-EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIE 62
           Q+ K E   Q++ +  + E   +L  D +                  +  L +V      
Sbjct: 59  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118

Query: 63  LGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
               ++      HG TPLH          VK L+ +G+N L  ++  ++ L  A
Sbjct: 119 TQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.0 bits (145), Expect = 4e-10
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL---IELGAKVDAYR 71
             Y     +  + +            K              + + L     +   ++A  
Sbjct: 221 AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA-- 278

Query: 72  PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
              +G T L+ AA+ G    V  LL YGA+  + N     P++  
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.3 bits (143), Expect = 8e-10
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 17/130 (13%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYD---VAKTLIELGAKVDAYRPG 73
             N+E +K L + G+   + D  G++ L+ A  +   YD       L  L   +      
Sbjct: 141 IANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL--ED 198

Query: 74  RHGGTPLHHAA------------KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF 121
               T LHH              K  L+  +  ++      +    + +      +    
Sbjct: 199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258

Query: 122 TNVVRAIENH 131
            + +    + 
Sbjct: 259 KDSILENLDL 268

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
                +E +         L   D  G T L  A    G   +   L++ GA        +
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL-GNISIVDALLDYGADPFI--ANK 314

Query: 75  HGGTPLHHAA 84
            G  P+   A
Sbjct: 315 SGLRPVDFGA 324

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 61.2 bits (148), Expect = 1e-10
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 10/128 (7%)

Query: 6   SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKE------GKTPLIAACM--NPGLYDVA 57
            + + L+  +   ++  +     +G                +  L  A    N     + 
Sbjct: 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 209

Query: 58  KTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVAR 117
             +I+ G  +DA      G T LH+AA       +KLLL   A    +N+  +T L++AR
Sbjct: 210 DFIIQNGGHLDAKAA--DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267

Query: 118 AKGFTNVV 125
            K      
Sbjct: 268 KKHHKECE 275

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 43.8 bits (103), Expect = 7e-05
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 3/99 (3%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           L  +  N  ++  +  + ++G  L+    +G T L  A +     D  K L++  A V  
Sbjct: 196 LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALY-NQPDCLKLLLKGRALVGT 254

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDD 108
                 G T L  A K+  +   +LL    A        
Sbjct: 255 --VNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLH 291

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 56.3 bits (135), Expect = 8e-09
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 382 TIPSAPPVTDEITE---DGPVQYPSIDVGPVDVSS----PSIEQLPCSKSKVKGDKDATS 434
           TIP   P+   + +   +G   +P       D++        + +  ++ + +   +  S
Sbjct: 271 TIPHNKPLFQALIDGFREGFYLFPDGRNQNPDLTGLCEPTPQDHIKVTQEQYELYCEMGS 330

Query: 435 S---CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWG-CPVCRANIS--QVIRLY 485
           +   C IC +   +    PCGH+  C SCL   +  +   CP CR  I   + I + 
Sbjct: 331 TFQLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD 386

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.3 bits (135), Expect = 9e-09
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
            ++  TPLI A     L      L++ GA V+       G  PLHHA   G      L L
Sbjct: 232 GQDNATPLIQATAANSLLACE-FLLQNGANVNQADS--AGRGPLHHATILGHTGLACLFL 288

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVR 126
             GA+    + + + PL +A      ++V 
Sbjct: 289 KRGADLGARDSEGRDPLTIAMETANADIVT 318

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 54.1 bits (130), Expect = 5e-08
 Identities = 26/134 (19%), Positives = 47/134 (35%), Gaps = 10/134 (7%)

Query: 5   QSKEELLYQQVNYGNVEGIKALCRDGAGLEW------IDKEGKTPLIAACMNPGLYDVAK 58
             + + L+  +   ++  +     +G                +  L  A        +  
Sbjct: 130 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 189

Query: 59  T--LIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
              +I+ G  +DA      G T LH+AA       +KLLL   A    +N+  +T L++A
Sbjct: 190 VDFIIQNGGHLDA--KAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

Query: 117 RAKGFTNVVRAIEN 130
           R K        +E 
Sbjct: 248 RKKHHKECEELLEQ 261

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 48.7 bits (116), Expect = 6e-08
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 429 DKDATSSCVICLD-------APVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS-- 479
               T SC IC+D                CGH+  C  CL +       CP CR  I+  
Sbjct: 6   RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHK 64

Query: 480 QVIRLY 485
           +   +Y
Sbjct: 65  RYHPIY 70

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 48.3 bits (115), Expect = 7e-08
 Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)

Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479
            C ICL   V    +PC H+  C  C+         C +CR  I 
Sbjct: 17  ECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIP 60

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 429 DKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481
           +++    C IC  A        C H   C SC  E       C +C      +
Sbjct: 11  EEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI 62

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 48.9 bits (116), Expect = 3e-07
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV 487
            C+IC +  +E   + C H   C  C+NE   +K  CP+CR +I        +
Sbjct: 66  QCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKTYSLVL 117

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 435 SCVICLDAPVEGACV-------PCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY 485
           SC IC+D   E            CGH+  C  CL +       CP CR  I+  +   +Y
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 63

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 45.9 bits (109), Expect = 6e-07
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIR 483
                C ICL+ P   +   PC H   C  C+     +   CP+C+  +  V+ 
Sbjct: 3   TVAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKWGCPVCRANISQVIRLYA 486
            C IC++  VE   +PC H   C  C    V+     CP CR  +S   R + 
Sbjct: 17  QCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSSWTRYHT 68

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 422 SKSKVKGDKDATSSCVICLDAPVEGACV-------PCGHMAGCMSCLNEVKAKKWGCPVC 474
             S        T SC IC+D   E            CGH+  C  CL +       CP C
Sbjct: 4   GSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTC 62

Query: 475 RANISQ 480
           R  I+ 
Sbjct: 63  RKKINH 68

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 422 SKSKVKGDKDATSSCVICLDAPVEGACVP-CGHMAGCMSCLNE-VKAKKWGCPVCRANIS 479
              +          C IC++   +    P C  +  C SC+   +  ++  CP CRA + 
Sbjct: 11  MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQ 69

Query: 480 Q 480
            
Sbjct: 70  L 70

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 46.1 bits (108), Expect = 4e-06
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 23/53 (43%)

Query: 251 DKQQLQAFCNACKGIPQVNPAFLHNPQSHAVQATAPTPAEDLELAMAINASIQ 303
           +KQ L+    + K         L+   S      AP        A+AI A+++
Sbjct: 18  EKQALKKLQASLK---------LYADDS------AP--------ALAIKATME 47

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 18/78 (23%)

Query: 412 SSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACV---PCGHM--AGCMSCLNEVKA 466
           SS S  QLP  +      +   + CV+C+        +   PC H   A C+        
Sbjct: 2   SSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVD------- 54

Query: 467 KKW-----GCPVCRANIS 479
            KW      CP+CRA+  
Sbjct: 55  -KWLKANRTCPICRADSG 71

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEV-KAKKWGCPVCRANISQ 480
            C+ C +         C H   C  CL+   +A+ + CP CR ++ +
Sbjct: 54  QCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 44.6 bits (105), Expect = 8e-06
 Identities = 28/128 (21%), Positives = 44/128 (34%), Gaps = 11/128 (8%)

Query: 359 SSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDEITEDGPVQYPSI--DVGPVDVSSPSI 416
           SS      ++ +    +   S     S      E  +  P Q   I  D     +    +
Sbjct: 3   SSHHHHHHSSGLVPRGSPSASKVYKASDSAEAIEAFQLTPQQQHLIREDCQNQKLWDEVL 62

Query: 417 EQLPCSKSKVKGDKDATSSCVICLD---APVEGACVPCGHMAGCMSCLNEV-KAKKWGCP 472
             L    + +K  +  +  CV C +    PV      C H   C  CL    KA+ + CP
Sbjct: 63  SHLVEGPNFLKKLEQ-SFMCVCCQELVYQPVT---TECFHNV-CKDCLQRSFKAQVFSCP 117

Query: 473 VCRANISQ 480
            CR ++ Q
Sbjct: 118 ACRHDLGQ 125

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKWGCPVCRANISQ 480
           C  C           CGH   C SC+   + +    C  C+ +I +
Sbjct: 18  CEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 2e-05
 Identities = 66/478 (13%), Positives = 130/478 (27%), Gaps = 166/478 (34%)

Query: 3   LQQSKEELLYQ------QVNYG-NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYD 55
           L   +EE++ +      ++NY   +  IK   R             T +     +  LY+
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--------PSMMTRMYIEQRDR-LYN 121

Query: 56  VAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLE--RTVKLLLSYGA-----NALVLNDD 108
             +      AK +  R         +   ++ L   R  K +L  G        + L   
Sbjct: 122 DNQVF----AKYNVSRL------QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL--- 168

Query: 109 CQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG 168
                +V  +     V   ++  I              F             W+ +    
Sbjct: 169 -----DVCLSYK---VQCKMDFKI--------------F-------------WLNL---K 190

Query: 169 SRNPTKPFKLELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSVTIVDNSTIPRGRRR 228
           + N  +          ++L+    M+  L    ++      SD S  I       +   R
Sbjct: 191 NCNSPE----------TVLE----MLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 229 RRRCRTQIIRQTRIK---LAAANESDKQQLQAFCNACKGI-----PQVNPAFLHNPQSHA 280
           R      +++    +   L   N  + +   AF  +CK +      QV         +H 
Sbjct: 236 R------LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 281 VQATAP---TPAEDLEL-AMAINASIQTAIAETPICDPQPSSGATAASTSWNNSGQGASA 336
                    TP E   L    ++   Q    + P    +  +                  
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQ----DLP---REVLTT----------------- 325

Query: 337 APSPSKASSSQWVMHEARLSGHSSQQTQIQNNNMPATKTMIH-SLDTIPSAPPVTDEITE 395
             +P + S     +    +    +     ++ N     T+I  SL+ +        E  +
Sbjct: 326 --NPRRLS-----IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-----AEYRK 373

Query: 396 DGPVQYPSIDVGPVDVSSPS-----------------IEQLPCSKSKVKGD-KDATSS 435
                +  + V P     P+                 +       S V+   K++T S
Sbjct: 374 ----MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 39.8 bits (93), Expect = 9e-05
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 15/68 (22%)

Query: 421 CSKSKVKGDKDATSSCVICLDAPVEGACV---PCGHMAGCMSCLNEVKAKKW-----GCP 472
            S  KVK + +    C +CL+       +   PC H      CL      KW      CP
Sbjct: 4   GSSGKVK-ELNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCL-----IKWLEVRKVCP 56

Query: 473 VCRANISQ 480
           +C   + Q
Sbjct: 57  LCNMPVLQ 64

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKWGCPVCRANIS 479
            C ICL A  E    PCGH   C +C+ + ++     CPV    + 
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILL 64

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 39.4 bits (92), Expect = 3e-04
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 6/49 (12%)

Query: 435 SCVICLD---APVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480
            C IC +     +      C H   C  C+ +  + K  CP C   +++
Sbjct: 24  RCGICFEYFNIAM--IIPQCSH-NYCSLCIRKFLSYKTQCPTCCVTVTE 69

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWG---CPVCRANISQ 480
            C ICLD   +   + CGH   C+ C+ ++     G   CP+C+ ++ +
Sbjct: 22  ICPICLDILQKPVTIDCGH-NFCLKCITQIGETSCGFFKCPLCKTSVRK 69

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481
           C IC+D       +PC H + C  C+++   +   CP+CR  ++  
Sbjct: 18  CCICMD-GRADLILPCAH-SFCQKCIDKWSDRHRNCPICRLQMTGA 61

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 18/67 (26%)

Query: 423 KSKVKGDKDATSSCVICLDAPVEGACV---PCGHM--AGCMSCLNEVKAKKW-----GCP 472
             +   ++D    C ICL    EG  V   PC H+    C+         +W      CP
Sbjct: 4   DGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCV--------DQWLITNKKCP 55

Query: 473 VCRANIS 479
           +CR +I 
Sbjct: 56  ICRVDIE 62

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 22/84 (26%), Positives = 26/84 (30%), Gaps = 19/84 (22%)

Query: 406 VGPVDVSSPSIEQLPCSK-SKVKGDKDATSSCVICLDAPVEGACV---PCGHM--AGCMS 459
           V     S  SI+ LP    ++  G       C IC    V+G      PC H     C  
Sbjct: 12  VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPC-- 69

Query: 460 CLNEVKAKKW-----GCPVCRANI 478
                    W      CPVCR   
Sbjct: 70  ------VSIWLQKSGTCPVCRCMF 87

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 7/48 (14%)

Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWG------CPVCRA 476
           +C ICL+   E     C H + C +C+               CPVCR 
Sbjct: 21  TCPICLELLKEPVSADCNH-SFCRACITLNYESNRNTDGKGNCPVCRV 67

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 436 CVICLD---APVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480
           CV+C            + C H   C +C+         CP+C   + +
Sbjct: 18  CVLCGGYFIDAT--TIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 10/52 (19%)

Query: 435 SCVICLD---APVEGACVPCGHMAGCMSCLNEVKAKKWG---CPVCRANISQ 480
            C ICL+    PV      C H   C  C+ ++  +K G   CP+C+ +I++
Sbjct: 23  ECPICLELIKEPVS---TKCDH-IFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.3 bits (91), Expect = 8e-04
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKWGCPVCRANISQ 480
            C ICL A  E    PCGH   C +C+ + ++     CPV    + +
Sbjct: 20  ECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	487
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.98
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.98
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.98
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.98
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.98
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.97
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.96
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.96
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.84
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.84
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.48
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.47
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.42
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.25
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.2
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.19
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.16
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.16
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.16
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.13
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.12
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.12
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.1
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.09
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.08
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.05
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.05
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.05
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.03
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.03
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.01
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.0
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.99
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.98
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.98
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.97
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.97
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.96
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.95
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.95
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.94
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.91
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.9
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.89
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.87
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.86
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.86
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.84
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.84
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.81
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.81
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.8
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.79
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.79
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.77
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.77
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.74
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.74
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.73
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.69
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.69
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.68
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.68
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.64
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.56
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.51
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.46
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.43
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.43
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.42
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.27
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.16
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.12
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.11
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.95
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.69
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.66
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.37
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.21
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	96.53
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	93.62
3nw0_A	238	Non-structural maintenance of chromosomes element	92.43
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.59

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.6e-35  Score=262.09  Aligned_cols=159  Identities=33%  Similarity=0.426  Sum_probs=150.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660            9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL   88 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~   88 (487)
                      +.|+.||+.|+.++|+.||++|+++|.+|..|+||||+|+.. ++.+++++|++.|++++.+  |..|+||||+|+..|+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~-~~~~~~~~ll~~gad~~~~--d~~g~TpLh~A~~~g~   82 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDGRTPLHHAAENGH   82 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhhh--ccCCCCHHHHHHHcCC
Confidence            579999999999999999999999999999999999999999 9999999999999999998  9999999999999999


Q ss_pred             HHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660           89 ERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG  168 (487)
Q Consensus        89 ~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g  168 (487)
                      .++|++|+++|++++.+|.+|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|...++.+++++|+++|
T Consensus        83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~G  159 (169)
T 4gpm_A           83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLD-LAREHGNEEVVKLLEKQG  159 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999  99999999999 999999999999999999


Q ss_pred             CCCCC
Q 040660          169 SRNPT  173 (487)
Q Consensus       169 ~~~~~  173 (487)
                      ++++.
T Consensus       160 A~ie~  164 (169)
T 4gpm_A          160 GWLEH  164 (169)
T ss_dssp             -----
T ss_pred             CCcCC
Confidence            99754

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.5e-32  Score=264.04  Aligned_cols=210  Identities=22%  Similarity=0.173  Sum_probs=182.5

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAG---LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTP   79 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   79 (487)
                      .|++|+||||+|++.|+.++|++|+++|++   ++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~tp   81 (282)
T 1oy3_D            5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGHTA   81 (282)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSCCH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence            588999999999999999999999999988   888999999999999999 9999999999999999998  8999999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCC-----------------------------------------------cccccCCCCCH
Q 040660           80 LHHAAKRGLERTVKLLLSYGAN-----------------------------------------------ALVLNDDCQTP  112 (487)
Q Consensus        80 Lh~Aa~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~d~~g~Tp  112 (487)
                      ||+|+..|+.+++++|+++|++                                               ++.+|..|+||
T Consensus        82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~  161 (282)
T 1oy3_D           82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (282)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence            9999999999999999998755                                               77889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCccccccccc-CCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccch
Q 040660          113 LEVARAKGFTNVVRAIENHICIFSGWLREL-YGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARP  191 (487)
Q Consensus       113 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                      ||+|+..|+.++|++|+++|++++  ..+. .|.|||| +|+..++.+++++|+.+|++.+.++..+..+++.+...+..
T Consensus       162 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~  238 (282)
T 1oy3_D          162 LHVAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP  238 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHH-HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCc
Confidence            999999999999999999999998  7774 5999999 89999999999999999999999998899999999888888


Q ss_pred             HHHHHHH--hcccCCCCCCCCCCceeeec
Q 040660          192 RMVIALW--KANLEEPKFQHSDPSVTIVD  218 (487)
Q Consensus       192 ~~~~~l~--~~~~~~~~~~~~~~~~~i~~  218 (487)
                      ..+..|.  ++.+...+..+.+|+.....
T Consensus       239 ~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~  267 (282)
T 1oy3_D          239 ILARLLRAHGAPEPEDGGDKLSPCSSSGS  267 (282)
T ss_dssp             HHHHHHHHTTCCCCCCC------------
T ss_pred             HHHHHHHHcCCCcCcCCCcccccccccCC
Confidence            8888776  45566666677777765553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.1e-32  Score=257.13  Aligned_cols=190  Identities=21%  Similarity=0.119  Sum_probs=180.5

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC-CccccCCCCCCCcHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA-KVDAYRPGRHGGTPLH   81 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga-~~~~~~~d~~g~TpLh   81 (487)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.|+ +++..  |..|.||||
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~  129 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPLI  129 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCC--CTTCCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccc--CCCCCcHHH
Confidence            378899999999999999999999999999999999999999999999 99999999999997 88887  899999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW  161 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~  161 (487)
                      +|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~-~A~~~~~~~~v  206 (253)
T 1yyh_A          130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETA  206 (253)
T ss_dssp             HHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHH
T ss_pred             HHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999 89999999999


Q ss_pred             HHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                      ++|+++|++.+.++..+..++..+...+....+..+.
T Consensus       207 ~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~  243 (253)
T 1yyh_A          207 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD  243 (253)
T ss_dssp             HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999988888888888888777777554

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.98  E-value=2.2e-31  Score=247.17  Aligned_cols=192  Identities=21%  Similarity=0.125  Sum_probs=181.4

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC-CccccCCCCCCCcHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA-KVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga-~~~~~~~d~~g~TpLh~   82 (487)
                      |.+|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.++ +++..  +..|.||||+
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~~   98 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPLIL   98 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHBTTSCTTCC--CTTCCCHHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CCCCCcHHHH
Confidence            68899999999999999999999999999999999999999999999 99999999999987 88887  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++++
T Consensus        99 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  175 (223)
T 2f8y_A           99 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETAK  175 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHTCHHHHH
T ss_pred             HHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHH-HHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999  99999999999 899999999999


Q ss_pred             HhhcCCCCCCCCCCccchhccccccccchHHHHHHHhcc
Q 040660          163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKAN  201 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  201 (487)
                      +|+++|++.+..+..+..++..+...+....+..|....
T Consensus       176 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g  214 (223)
T 2f8y_A          176 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN  214 (223)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence            999999999988888888888888888888887766533

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.98  E-value=2e-31  Score=248.91  Aligned_cols=187  Identities=22%  Similarity=0.168  Sum_probs=162.4

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        36 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~  112 (231)
T 3aji_A           36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GXDEIVKALLVKGAHVNAV--NQNGCTPLHY  112 (231)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc-CHHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence            467888999999999999999999999999998899999999999999 8899999999999998887  8889999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|...++.++++
T Consensus       113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  189 (231)
T 3aji_A          113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLH-LACDEERVEEAK  189 (231)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHH-HHHHCCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999888  88889999999 888888999999


Q ss_pred             HhhcCCCCCCCCCCccchhccccccccchHHHH
Q 040660          163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVI  195 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      +|+++|++.+.++..+..+++.+........+.
T Consensus       190 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~  222 (231)
T 3aji_A          190 FLVTQGASIYIENKEEKTPLQVAKGGLGLILKR  222 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHH
Confidence            999999988888777777777766544444443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.98  E-value=3e-31  Score=256.55  Aligned_cols=205  Identities=20%  Similarity=0.192  Sum_probs=183.8

Q ss_pred             CCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            2 GLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      +.|.+|+||||+|+..|+.++|++|++.|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||
T Consensus        54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~t~L~  130 (285)
T 3d9h_A           54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWHTPLF  130 (285)
T ss_dssp             SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHT-TCHHHHHHHHHTTCCSSCC--CTTCCCHHH
T ss_pred             CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCC--CCCCCCHHH
Confidence            4578899999999999999999999999999999999999999999999 9999999999999999998  999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW  161 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~  161 (487)
                      +|+..|+.+++++|++.|++++..+ +|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v  206 (285)
T 3d9h_A          131 NACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRACV  206 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHHHH
T ss_pred             HHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcHHHH
Confidence            9999999999999999999998654 59999999999999999999999999999  99999999999 99999999999


Q ss_pred             HHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc--ccCCCCCCCCCCce
Q 040660          162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA--NLEEPKFQHSDPSV  214 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~  214 (487)
                      ++|++.|++.+. +..+..+++.+...+....+..|...  .++..+..+.+++.
T Consensus       207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~  260 (285)
T 3d9h_A          207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE  260 (285)
T ss_dssp             HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            999999999875 55778888888888888888777643  33334444444444

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.98  E-value=3e-31  Score=235.87  Aligned_cols=159  Identities=23%  Similarity=0.303  Sum_probs=152.4

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      ...+.++|++|++.|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+|
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A   87 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAV--DHAGMTPLRLA   87 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence            34678999999999999999999999999999999999999999999 9999999999999999998  89999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVA  163 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~  163 (487)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|...++.+++++
T Consensus        88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~  164 (169)
T 2y1l_E           88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFD-ISIDNGNEDLAEI  164 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999  99999999999 8999999999999


Q ss_pred             hhcCC
Q 040660          164 VLPTG  168 (487)
Q Consensus       164 Ll~~g  168 (487)
                      |++.|
T Consensus       165 L~~~G  169 (169)
T 2y1l_E          165 LQKLN  169 (169)
T ss_dssp             HHTC-
T ss_pred             HHHcC
Confidence            99876

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=3.1e-31  Score=248.53  Aligned_cols=191  Identities=23%  Similarity=0.227  Sum_probs=182.0

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|++|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. |+.+++++|++.|++++.+  +..|.||||+
T Consensus         7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~   83 (237)
T 3b7b_A            7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKAGALVDPK--DAEGSTCLHL   83 (237)
T ss_dssp             SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCCCCC--CTTSCCHHHH
T ss_pred             ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHh-CCHHHHHHHHhCCCCCCCC--CCCCCcHHHH
Confidence            467899999999999999999999999999999999999999999999 9999999999999999988  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcC-CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660           83 AAKRGLERTVKLLLSYG-ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW  161 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~  161 (487)
                      |+..|+.+++++|++.| .+++..|..|+||||+|+..|+.+++++|+++|++++  .++..|.|||| .|...++.+++
T Consensus        84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~~  160 (237)
T 3b7b_A           84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLH-WAAFSGCVDIA  160 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHCCCHHHH
Confidence            99999999999999999 8999999999999999999999999999999999999  99999999999 89999999999


Q ss_pred             HHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660          162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                      ++|++.|++.+..+..+..+++.+...+....+..|..
T Consensus       161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  198 (237)
T 3b7b_A          161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS  198 (237)
T ss_dssp             HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence            99999999999988888888888888888888887764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.97  E-value=1.8e-31  Score=256.43  Aligned_cols=178  Identities=21%  Similarity=0.138  Sum_probs=158.8

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCC----------------
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK----------------   66 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~----------------   66 (487)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++                
T Consensus        41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~  119 (282)
T 1oy3_D           41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDC  119 (282)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC-----------
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhccccc
Confidence            467899999999999999999999999999999999999999999999 999999999998865                


Q ss_pred             -------------------------------ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCC-CCCHHH
Q 040660           67 -------------------------------VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDD-CQTPLE  114 (487)
Q Consensus        67 -------------------------------~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~-g~TpL~  114 (487)
                                                     ++.+  |..|.||||+|+..|+.++|++|+++|++++..+.. |+||||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~  197 (282)
T 1oy3_D          120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE--NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH  197 (282)
T ss_dssp             ------------------------CCCGGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred             CcchhcchhhhccccccchhhhhhhhhhhhcCCCc--CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence                                           5555  889999999999999999999999999999999864 999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660          115 VARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL  186 (487)
Q Consensus       115 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  186 (487)
                      +|+..|+.++|++|+++|++++  .+|..|.|||| +|...++.+++++|+++|++.+.++..+...+..+.
T Consensus       198 ~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~  266 (282)
T 1oy3_D          198 LAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG  266 (282)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCc--ccccCCCCHHH-HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence            9999999999999999999999  99999999999 999999999999999999999888866665555443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=1.1e-31  Score=243.81  Aligned_cols=160  Identities=26%  Similarity=0.217  Sum_probs=155.3

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+
T Consensus        31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~  107 (192)
T 2rfm_A           31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKGSNVNTK--DFSGKTPLMW  107 (192)
T ss_dssp             CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcHHHH
Confidence            478899999999999999999999999999999999999999999999 9999999999999999998  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|...++.++++
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~v~  184 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEA-SARIFGRQEVIK  184 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999999  99999999999 999999999999


Q ss_pred             HhhcCC
Q 040660          163 AVLPTG  168 (487)
Q Consensus       163 ~Ll~~g  168 (487)
                      +|++.|
T Consensus       185 ~Ll~~~  190 (192)
T 2rfm_A          185 IFTEVR  190 (192)
T ss_dssp             HHHHHH
T ss_pred             HHHhcc
Confidence            998754

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=8.2e-31  Score=246.04  Aligned_cols=206  Identities=21%  Similarity=0.187  Sum_probs=184.5

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCR----DGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT   78 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   78 (487)
                      .|++|+|+||+|++.|+.++|++|++    .|.+++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.|
T Consensus         5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t   81 (241)
T 1k1a_A            5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHGQT   81 (241)
T ss_dssp             --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCCCC
Confidence            58899999999999999999999997    7899999999999999999999 9999999999999999998  899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCC----CcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc-cCCCCHHHHHhh
Q 040660           79 PLHHAAKRGLERTVKLLLSYGA----NALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE-LYGPGFLELLAP  153 (487)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~ga----~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~G~t~L~~~a~  153 (487)
                      |||+|+..|+.+++++|++.++    +++..|..|+||||+|+..|+.+++++|+++|++++  ..+ ..|.|||| +|+
T Consensus        82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~-~A~  158 (241)
T 1k1a_A           82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLI-HAV  158 (241)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHH-HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHH-HHH
Confidence            9999999999999999999987    889999999999999999999999999999999998  777 88999999 899


Q ss_pred             hcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc--ccCCCCCCCCCCce
Q 040660          154 QLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA--NLEEPKFQHSDPSV  214 (487)
Q Consensus       154 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~  214 (487)
                      ..++.+++++|+++|++.+..+..+..+++.+...+....+..|...  .++..+..+.+|+.
T Consensus       159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  221 (241)
T 1k1a_A          159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM  221 (241)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            99999999999999999999888888888888888888888777643  33333344444444

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=4.3e-31  Score=246.93  Aligned_cols=188  Identities=18%  Similarity=0.136  Sum_probs=172.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCc-----cccCCCCCCCcH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV-----DAYRPGRHGGTP   79 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~-----~~~~~d~~g~Tp   79 (487)
                      .|+||||+|++.|+.++|+.|++. |++++.+|..|+||||+|+.. |+.+++++|++.|+++     +..  |..|.||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~~g~t~   78 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAPELVFEPMTSE--LYEGQTA   78 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGCCCCST--TTTTCCH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCchhcccccccc--CCCCcCH
Confidence            489999999999999999999998 999999999999999999999 9999999999999987     444  7899999


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCcccccC-------------CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCC
Q 040660           80 LHHAAKRGLERTVKLLLSYGANALVLND-------------DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPG  146 (487)
Q Consensus        80 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~d~-------------~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t  146 (487)
                      ||+|+..|+.+++++|+++|++++..+.             .|+||||+|+..|+.++|++|+++|++++  .+|..|.|
T Consensus        79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t  156 (232)
T 2rfa_A           79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNT  156 (232)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCC
T ss_pred             HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCC
Confidence            9999999999999999999999998876             79999999999999999999999999999  99999999


Q ss_pred             HHHHHhhhcCCHHHH----HHhhcCCCCC------CCCCCccchhccccccccchHHHHHHHh
Q 040660          147 FLELLAPQLLSRKVW----VAVLPTGSRN------PTKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       147 ~L~~~a~~~~~~~~~----~~Ll~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                      ||| +|+..++.+++    ++|+..|++.      +.++..+..+++.+...+....+..|..
T Consensus       157 ~L~-~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~  218 (232)
T 2rfa_A          157 VLH-ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ  218 (232)
T ss_dssp             HHH-HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHH-HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999 89999999888    9999999987      3666677788888887777777776654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=1.1e-31  Score=254.73  Aligned_cols=206  Identities=20%  Similarity=0.180  Sum_probs=155.9

Q ss_pred             CCCCchHHHHHHHHcC-------------CHHHHHHHHHcCCCCCc-cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCcc
Q 040660            3 LQQSKEELLYQQVNYG-------------NVEGIKALCRDGAGLEW-IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVD   68 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g-------------~~~~v~~Ll~~g~~~~~-~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~   68 (487)
                      .|++|+||||+|+..|             +.+++++|++.|++++. .|..|.||||+|+.. |+.+++++|+++|++++
T Consensus         6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~   84 (253)
T 1yyh_A            6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY-SRSDAAKRLLEASADAN   84 (253)
T ss_dssp             ----------------------------------------------CCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCC
Confidence            4788999999999987             89999999999999865 589999999999999 99999999999999999


Q ss_pred             ccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCC-CcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCH
Q 040660           69 AYRPGRHGGTPLHHAAKRGLERTVKLLLSYGA-NALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGF  147 (487)
Q Consensus        69 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~  147 (487)
                      .+  |..|.||||+|+..|+.+++++|++.|+ +++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.||
T Consensus        85 ~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t~  160 (253)
T 1yyh_A           85 IQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKSA  160 (253)
T ss_dssp             CC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCTTSCBH
T ss_pred             CC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCCCCCCH
Confidence            98  9999999999999999999999999997 899999999999999999999999999999999999  999999999


Q ss_pred             HHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc--ccCCCCCCCCCCce
Q 040660          148 LELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA--NLEEPKFQHSDPSV  214 (487)
Q Consensus       148 L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~  214 (487)
                      || +|+..++.+++++|+++|++.+.++..+..+++.+...+....+..|...  .++..+..+.+|+.
T Consensus       161 L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  228 (253)
T 1yyh_A          161 LH-WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD  228 (253)
T ss_dssp             HH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence            99 89999999999999999999999998889999988888888888777643  33333334444443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=3.3e-31  Score=233.38  Aligned_cols=159  Identities=23%  Similarity=0.302  Sum_probs=150.4

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      +...|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.  |+.+++++|+++|++++.+  |..|.||||+|+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~   78 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL--GNPEIARRLLLRGANPDLK--DRTGFAVIHDAA   78 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS--SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc--CcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH
Confidence            467899999999999999999999999999999999999999877  8899999999999999998  999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc-ccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660           85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI-FSGWLRELYGPGFLELLAPQLLSRKVWVA  163 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~d~~G~t~L~~~a~~~~~~~~~~~  163 (487)
                      ..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|++ ++  .+|..|.|||| +|...++.+++++
T Consensus        79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~  155 (162)
T 1ihb_A           79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSL  155 (162)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999998 57  89999999999 9999999999999


Q ss_pred             hhcCCCC
Q 040660          164 VLPTGSR  170 (487)
Q Consensus       164 Ll~~g~~  170 (487)
                      |+++|++
T Consensus       156 Ll~~GAd  162 (162)
T 1ihb_A          156 MQANGAG  162 (162)
T ss_dssp             HHHTC--
T ss_pred             HHHhCCC
Confidence            9999985

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=3.7e-31  Score=234.55  Aligned_cols=160  Identities=21%  Similarity=0.198  Sum_probs=154.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK   85 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~   85 (487)
                      +|.|+||+|+..|+.++|++|++.|.+++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+|+.
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLL--GKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHH
Confidence            578999999999999999999999999999999999999999999 9999999999999999998  8999999999999


Q ss_pred             hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660           86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL  165 (487)
Q Consensus        86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll  165 (487)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|...++.+++++|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMD-LAVALGYRSVQQVIE  155 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999  99999999999 999999999999999


Q ss_pred             cCCCCC
Q 040660          166 PTGSRN  171 (487)
Q Consensus       166 ~~g~~~  171 (487)
                      +++.+.
T Consensus       156 ~~~~~~  161 (167)
T 3v31_A          156 SHLLKL  161 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=1e-30  Score=245.44  Aligned_cols=188  Identities=19%  Similarity=0.175  Sum_probs=175.6

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC----CccccCCCCCCCc
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA----KVDAYRPGRHGGT   78 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga----~~~~~~~d~~g~T   78 (487)
                      .|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|++.++    +++..  |..|.|
T Consensus        42 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~--~~~g~t  118 (241)
T 1k1a_A           42 YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEAR--NYDGLT  118 (241)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCC--CTTSCC
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccccc--CcCCCc
Confidence            467799999999999999999999999999999999999999999999 99999999999987    77777  899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCC
Q 040660           79 PLHHAAKRGLERTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLS  157 (487)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~  157 (487)
                      |||+|+..|+.+++++|++.|++++..+ ..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++
T Consensus       119 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~  195 (241)
T 1k1a_A          119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALH-SASGRGL  195 (241)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCC
Confidence            9999999999999999999999999999 899999999999999999999999999999  99999999999 8999999


Q ss_pred             HHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHH
Q 040660          158 RKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIA  196 (487)
Q Consensus       158 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (487)
                      .+++++|+++|++.+.++..+..+++.+...+....+..
T Consensus       196 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~  234 (241)
T 1k1a_A          196 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG  234 (241)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred             HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence            999999999999999888888888888876655555543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=2.4e-30  Score=251.22  Aligned_cols=183  Identities=23%  Similarity=0.267  Sum_probs=160.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      ++.+|.|+||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~  112 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHA  112 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcHHHH
Confidence            355789999999999999999999999999999999999999999999 9999999999999999998  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccC-------------------------------------------------------
Q 040660           83 AAKRGLERTVKLLLSYGANALVLND-------------------------------------------------------  107 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~-------------------------------------------------------  107 (487)
                      |+..|+.++|++|+++|++++..|.                                                       
T Consensus       113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  192 (299)
T 1s70_B          113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (299)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence            9999999999999999999887664                                                       


Q ss_pred             -----CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhc
Q 040660          108 -----DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAI  182 (487)
Q Consensus       108 -----~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  182 (487)
                           .|.||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..++
T Consensus       193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l  269 (299)
T 1s70_B          193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAF  269 (299)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence                 45677778888888888888888888887  78888888888 78888888888888888888877777777777


Q ss_pred             cccccccch
Q 040660          183 YPSLLDARP  191 (487)
Q Consensus       183 ~~~~~~~~~  191 (487)
                      ..+......
T Consensus       270 ~~A~~~~~~  278 (299)
T 1s70_B          270 DVADEDILG  278 (299)
T ss_dssp             TSCCSGGGH
T ss_pred             HHHHHHHHH
Confidence            776554333

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.7e-31  Score=253.57  Aligned_cols=181  Identities=21%  Similarity=0.181  Sum_probs=148.9

Q ss_pred             CCCCchHHHHHHHHcCCH-HHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            3 LQQSKEELLYQQVNYGNV-EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~-~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      .|..|.|+||+|+..++. .++++|++.|+++|.+|.+|+||||+|+.. |+.+++++|++.|++++.+  +..|.||||
T Consensus        48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~~a~~~~~--~~~g~t~l~  124 (269)
T 4b93_B           48 ADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALH-GRADLIPLLLKHGANAGAR--NADQAVPLH  124 (269)
T ss_dssp             ---------------------------CCCCTTCCCTTSCCHHHHHHHT-TCTTHHHHHHHTTCCTTCC--CTTCCCHHH
T ss_pred             cCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHhcCCCcCcc--CCCCCCccc
Confidence            356788999999988876 478999999999999999999999999999 9999999999999999998  899999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW  161 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~  161 (487)
                      +|+..++.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++  .++..|.|||| +|+..++.+++
T Consensus       125 ~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh-~A~~~g~~~~v  201 (269)
T 4b93_B          125 LACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALH-EAVIEKHVFVV  201 (269)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHHHH
T ss_pred             cccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHH-HHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999 99999999999


Q ss_pred             HHhhcCCCCCCCCCCccchhcccccccc
Q 040660          162 VAVLPTGSRNPTKPFKLELAIYPSLLDA  189 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      ++|+++|++.+.++..+.+++..+.+.+
T Consensus       202 ~~Ll~~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          202 ELLLLHGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence            9999999999999988888888776543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=1.8e-30  Score=241.72  Aligned_cols=206  Identities=17%  Similarity=0.110  Sum_probs=172.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-CCCCCCcHHHHHH
Q 040660            7 KEELLYQQVNYGNVEGIKALCRDGAGLE-WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-PGRHGGTPLHHAA   84 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-~d~~g~TpLh~Aa   84 (487)
                      |+||||+|++.|+.++|+.|++.+.++. .+|..|.||||+|+.. |+.+++++|++.|++++... .|..|.||||+|+
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~   80 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC   80 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence            6789999999999999999999987754 4888999999999999 99999999999994444332 3788999999999


Q ss_pred             HhCCHHHHHHHHHcC--CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           85 KRGLERTVKLLLSYG--ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~g--a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      ..|+.+++++|+++|  ++++..|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.++++
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  157 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIE  157 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHH
Confidence            999999999999998  8888899999999999999999999999999999988  88999999999 888899999999


Q ss_pred             HhhcCC-CCCCCCCCccchhccccccccchHHHHHHH---hcccCCCCCCCCCCceee
Q 040660          163 AVLPTG-SRNPTKPFKLELAIYPSLLDARPRMVIALW---KANLEEPKFQHSDPSVTI  216 (487)
Q Consensus       163 ~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~i  216 (487)
                      +|++.| ++.+.++..+..+++.+...+....+..|.   +..++..+..+.+++.+.
T Consensus       158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A  215 (228)
T 2dzn_A          158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA  215 (228)
T ss_dssp             HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred             HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence            999999 888888888888888888877777777776   334444444455555433

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=1.9e-30  Score=241.66  Aligned_cols=181  Identities=20%  Similarity=0.122  Sum_probs=169.3

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcC--CCCCc-cCCCCChHHHHHHhCCCcHHHHHHHHHcC--CCccccCCCCCCC
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDG--AGLEW-IDKEGKTPLIAACMNPGLYDVAKTLIELG--AKVDAYRPGRHGG   77 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~-~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g--a~~~~~~~d~~g~   77 (487)
                      .|..|.||||+|+..|+.+++++|+++|  .+++. .|..|.||||+|+.. |+.+++++|+++|  ++++..  |..|.
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~--~~~g~  108 (228)
T 2dzn_A           32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKI--TNQGV  108 (228)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH-CCHHHHHHHHSSSSCCCTTCC--CTTCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccccC--CcCCC
Confidence            5788999999999999999999999999  55555 788999999999999 9999999999999  788877  89999


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC-CcccccccccCCCCHHHHHhhhcC
Q 040660           78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI-CIFSGWLRELYGPGFLELLAPQLL  156 (487)
Q Consensus        78 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~G~t~L~~~a~~~~  156 (487)
                      ||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++| ++++  .+|..|.|||| +|...+
T Consensus       109 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~-~A~~~~  185 (228)
T 2dzn_A          109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAEG  185 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHTT
T ss_pred             CHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHH-HHHHcC
Confidence            9999999999999999999999999999999999999999999999999999999 9998  99999999999 999999


Q ss_pred             CHHHHHHhh-cCCCCCCCCCCccchhcccccccc
Q 040660          157 SRKVWVAVL-PTGSRNPTKPFKLELAIYPSLLDA  189 (487)
Q Consensus       157 ~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~~~~  189 (487)
                      +.+++++|+ ..|++.+..+..+..++..+....
T Consensus       186 ~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~  219 (228)
T 2dzn_A          186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ  219 (228)
T ss_dssp             CHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred             CHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence            999999999 899999998888888887776543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=8.4e-31  Score=231.76  Aligned_cols=159  Identities=25%  Similarity=0.254  Sum_probs=149.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      +++|.|+||+|++.|+.++|+.|++. +.+++..+..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~   81 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY-NRVSVVEYLLQHGADVHAK--DKGGLVPLHN   81 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCcc--CCCCCCHHHH
Confidence            67899999999999999999999985 677888899999999999999 9999999999999999998  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|.. ++.++++
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~a~~-~~~~i~~  157 (165)
T 3twr_A           82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLD-LVKD-GDTDIQD  157 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGG-GSCT-TCHHHHH
T ss_pred             HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhH-hHhc-CChHHHH
Confidence            999999999999999999999999999999999999999999999999999999  99999999999 7666 8899999


Q ss_pred             HhhcCCC
Q 040660          163 AVLPTGS  169 (487)
Q Consensus       163 ~Ll~~g~  169 (487)
                      +|+.+|+
T Consensus       158 ~L~~~gA  164 (165)
T 3twr_A          158 LLRGDAA  164 (165)
T ss_dssp             HHHTC--
T ss_pred             HHhhccc
Confidence            9999886

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.97  E-value=2.6e-30  Score=242.29  Aligned_cols=190  Identities=22%  Similarity=0.239  Sum_probs=178.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC-CCccccCCCCCCCcHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG-AKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~TpLh   81 (487)
                      .+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+.. |+.+++++|++.| .+++..  |..|.||||
T Consensus        40 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~g~t~L~  116 (237)
T 3b7b_A           40 CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNCQ--DDGGWTPMI  116 (237)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT-TCHHHHHHHHTTTCCCTTCC--CTTSCCHHH
T ss_pred             cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCCCCCHHH
Confidence            467899999999999999999999999999999999999999999999 9999999999998 888887  899999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW  161 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~  161 (487)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  ..|..|.|||| +|...++.+++
T Consensus       117 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v  193 (237)
T 3b7b_A          117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLH-IAARENRYDCV  193 (237)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHhHH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999 89999999999


Q ss_pred             HHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                      ++|+++|++.+.++..+..+++.+...+....++.+.
T Consensus       194 ~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          194 VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999888888888888766665544443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=6.3e-31  Score=263.05  Aligned_cols=192  Identities=19%  Similarity=0.205  Sum_probs=126.6

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----------
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-----------   71 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-----------   71 (487)
                      .|.+|.|+||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..+           
T Consensus        16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~   94 (364)
T 3ljn_A           16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF-GCVDTAKYLASVGEVHSLWHGQKPIHLAVMA   94 (364)
T ss_dssp             CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-CCHHHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCccccCCCCHHHHHHHc
Confidence            477899999999999999999999999999999999999999999999 99999999999998766410           


Q ss_pred             ---------------------------------------CCCCCCcHHHHHHHhC--CHHHHHHHHHcCCCcccccCCCC
Q 040660           72 ---------------------------------------PGRHGGTPLHHAAKRG--LERTVKLLLSYGANALVLNDDCQ  110 (487)
Q Consensus        72 ---------------------------------------~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~d~~g~  110 (487)
                                                             .|..|.||||+|+..|  +.++|++|+++|++++.+|..|+
T Consensus        95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~  174 (364)
T 3ljn_A           95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE  174 (364)
T ss_dssp             TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence                                                   1334555555555555  55555555555555555555555


Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCc-----ccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhcccc
Q 040660          111 TPLEVARAKGFTNVVRAIENHICI-----FSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPS  185 (487)
Q Consensus       111 TpL~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~  185 (487)
                      ||||+|+..|+.++|++|+++|++     ++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..+++.+
T Consensus       175 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A  251 (364)
T 3ljn_A          175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLD--YANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS  251 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhccccccccccc--ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            555555555555555555555554     44  45555555555 45555555555555555555555554555555555


Q ss_pred             ccccchHHHHHHH
Q 040660          186 LLDARPRMVIALW  198 (487)
Q Consensus       186 ~~~~~~~~~~~l~  198 (487)
                      ...+....+..|.
T Consensus       252 ~~~g~~~~v~~Ll  264 (364)
T 3ljn_A          252 VRAAMVLLTKELL  264 (364)
T ss_dssp             HHTCCHHHHHHHH
T ss_pred             HHhChHHHHHHHH
Confidence            4444444444443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=2.6e-31  Score=249.23  Aligned_cols=192  Identities=19%  Similarity=0.176  Sum_probs=169.3

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGA----GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT   78 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~----~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T   78 (487)
                      .|++|+||||+|+..|+.+++++|++.+.    +++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.|
T Consensus         4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t   80 (236)
T 1ikn_D            4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRGNT   80 (236)
T ss_dssp             ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTCCC
T ss_pred             CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCC
Confidence            57889999999999999999999988754    6899999999999999999 9999999999999999987  889999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCC------cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccccc-CCCCHHHHH
Q 040660           79 PLHHAAKRGLERTVKLLLSYGAN------ALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLREL-YGPGFLELL  151 (487)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~ga~------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~G~t~L~~~  151 (487)
                      |||+|+..|+.+++++|++.|++      ++..|..|+||||+|+..|+.++|++|+++|++++  .++. .|.|||| +
T Consensus        81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~  157 (236)
T 1ikn_D           81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALH-L  157 (236)
T ss_dssp             HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-H
T ss_pred             HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCCHHH-H
Confidence            99999999999999999999876      57788899999999999999999999999999998  8887 8999999 8


Q ss_pred             hhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc
Q 040660          152 APQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA  200 (487)
Q Consensus       152 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (487)
                      |+..++.+++++|+++|++.+..+..+..+++.+...+....+..|...
T Consensus       158 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  206 (236)
T 1ikn_D          158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  206 (236)
T ss_dssp             HHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHc
Confidence            8899999999999999999998888888888888888888888877643

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.1e-30  Score=234.45  Aligned_cols=166  Identities=25%  Similarity=0.322  Sum_probs=156.5

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      .++.++||.|+..|+.++|++|++. +.+++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A   79 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-GRSAVVEMLIMRGARINVM--NRGDDTPLHLA   79 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence            4678999999999999999999998 678999999999999999999 9999999999999999998  89999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVA  163 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~  163 (487)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||+ +|...++.+++++
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~~~~  156 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVD-KAKAPLRELLRER  156 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGG-GSCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHH-HHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999  99999999999 9999999999999


Q ss_pred             hhcCCCCCCCCCC
Q 040660          164 VLPTGSRNPTKPF  176 (487)
Q Consensus       164 Ll~~g~~~~~~~~  176 (487)
                      |+..|++.+..+.
T Consensus       157 L~~~g~~~~~~~~  169 (179)
T 3f6q_A          157 AEKMGQNLNRIPY  169 (179)
T ss_dssp             HHHTTCCCSCBCC
T ss_pred             HHHhhcCcccCCc
Confidence            9999999876663

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5.3e-31  Score=234.69  Aligned_cols=163  Identities=23%  Similarity=0.195  Sum_probs=154.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660            7 KEELLYQQVNYGNVEGIKALCRDGAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK   85 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~   85 (487)
                      +.|+||+|+..|+.++++.|++.+.+ ++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   78 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHIL--AKERESALSLAST   78 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHH
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCchhh--cccCCCHHHHHHH
Confidence            46899999999999999999999877 899999999999999999 9999999999999999998  8999999999999


Q ss_pred             hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660           86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL  165 (487)
Q Consensus        86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll  165 (487)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|...++.+++++|+
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~  155 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMD-LAVALGYRKVQQVIE  155 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHhCcHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999  99999999999 999999999999999


Q ss_pred             cCCCCCCCCC
Q 040660          166 PTGSRNPTKP  175 (487)
Q Consensus       166 ~~g~~~~~~~  175 (487)
                      ++|++....+
T Consensus       156 ~~~~~~~~~~  165 (172)
T 3v30_A          156 NHILKLFQSN  165 (172)
T ss_dssp             HHHHHHSCC-
T ss_pred             HHHHHHhccc
Confidence            9988765444

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=2.9e-30  Score=225.46  Aligned_cols=152  Identities=21%  Similarity=0.237  Sum_probs=146.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK   85 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~   85 (487)
                      +..|+||+|++.|+.++|++|+++|++++ .|..|.||||+|+.. |+.+++++|++.|++++.+  |..|.||||+|+.
T Consensus         1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   76 (153)
T 1awc_B            1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAAS   76 (153)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHH
T ss_pred             CccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHH
Confidence            45799999999999999999999999887 588999999999999 9999999999999999998  8999999999999


Q ss_pred             hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660           86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV  164 (487)
Q Consensus        86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L  164 (487)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|...++.+++++|
T Consensus        77 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~~L  152 (153)
T 1awc_B           77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999  99999999999 99999999999987

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=5.1e-30  Score=247.89  Aligned_cols=186  Identities=20%  Similarity=0.237  Sum_probs=172.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.|++++.   +..|.||||+
T Consensus        88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~  163 (285)
T 3d9h_A           88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQP---ESDLASPIHE  163 (285)
T ss_dssp             ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSSC---SCTTSCHHHH
T ss_pred             cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCCCC---CCCCCCHHHH
Confidence            367899999999999999999999999999999999999999999999 999999999999999986   4569999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++  . +..|.|||| +|+..++.++++
T Consensus       164 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~-~~~g~t~L~-~A~~~~~~~~v~  239 (285)
T 3d9h_A          164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q-GKGQDSPLH-AVVRTASEELAC  239 (285)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--C-CBTTBCHHH-HHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--C-CCCCCCHHH-HHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999997  3 889999999 999999999999


Q ss_pred             HhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                      +|+++|++.+.++..+..++..+...  ...+..|.
T Consensus       240 ~Ll~~gad~~~~d~~g~t~l~~A~~~--~~~~~~Ll  273 (285)
T 3d9h_A          240 LLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFL  273 (285)
T ss_dssp             HHHHTTCCTTCCCTTSCCGGGGSCTT--SHHHHHHH
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHhcCc--cHHHHHHH
Confidence            99999999999998888888887743  34444444

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=3.6e-30  Score=234.97  Aligned_cols=189  Identities=19%  Similarity=0.184  Sum_probs=172.5

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGA-GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      +..+.|+||+|+..|+.+.|+.|+..+. +++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~   78 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDRGADINLQ--NSISDSPYLY   78 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence            4678899999999999999999999865 8999999999999999999 9999999999999999998  8999999999


Q ss_pred             HHHhCCHHHHHHHH-HcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC-CcccccccccCCCCHHHHHhhhcCC---
Q 040660           83 AAKRGLERTVKLLL-SYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI-CIFSGWLRELYGPGFLELLAPQLLS---  157 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll-~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~G~t~L~~~a~~~~~---  157 (487)
                      |+..|+.+++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++  .+|..|.|||| +|...+.   
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~-~A~~~~~~~~  155 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALI-EAVGLREGNQ  155 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHH-HHHHSSCCSH
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHH-HHHHhccchh
Confidence            99999999999999 566799999999999999999999999999999999 8888  99999999999 7777776   


Q ss_pred             --HHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          158 --RKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       158 --~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                        .+++++|+++|++.+.++..+..++..+...+....+..|.
T Consensus       156 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll  198 (201)
T 3hra_A          156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA  198 (201)
T ss_dssp             HHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence              89999999999999999888888888888877777777654

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=5.4e-30  Score=233.81  Aligned_cols=160  Identities=21%  Similarity=0.210  Sum_probs=153.7

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHH-HcCCCccccCCCCCCCcHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g~TpLh   81 (487)
                      .|.+|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+ ..+++++..  |..|.||||
T Consensus        35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~g~t~L~  111 (201)
T 3hra_A           35 VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKH--NRYGGNALI  111 (201)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCC--CTTSCCSHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhccCcccccc--cCCCCcHHH
Confidence            467899999999999999999999999999999999999999999999 9999999999 566789987  899999999


Q ss_pred             HHHHhCCHHHHHHHHHcC-CCcccccCCCCCHHHHHHHcCC-----HHHHHHHHhCCCcccccccccCCCCHHHHHhhhc
Q 040660           82 HAAKRGLERTVKLLLSYG-ANALVLNDDCQTPLEVARAKGF-----TNVVRAIENHICIFSGWLRELYGPGFLELLAPQL  155 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~  155 (487)
                      +|+..|+.+++++|++.| ++++.+|..|+||||+|+..+.     .+++++|+++|++++  .+|..|.|||| +|...
T Consensus       112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~  188 (201)
T 3hra_A          112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRTAMD-YANQK  188 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHc
Confidence            999999999999999999 9999999999999999999998     999999999999999  99999999999 99999


Q ss_pred             CCHHHHHHhhcCC
Q 040660          156 LSRKVWVAVLPTG  168 (487)
Q Consensus       156 ~~~~~~~~Ll~~g  168 (487)
                      ++.+++++|+++|
T Consensus       189 ~~~~~~~~Ll~~G  201 (201)
T 3hra_A          189 GYTEISKILAQYN  201 (201)
T ss_dssp             TCHHHHHHHHTCC
T ss_pred             CCHhHHHHHHhcC
Confidence            9999999999886

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.1e-30  Score=244.86  Aligned_cols=164  Identities=23%  Similarity=0.157  Sum_probs=156.0

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCC------ccccCCCCCC
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK------VDAYRPGRHG   76 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~------~~~~~~d~~g   76 (487)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.|++      ++..  +..|
T Consensus        41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~--~~~g  117 (236)
T 1ikn_D           41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKAT--NYNG  117 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCC--CTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhHHHHhhcc--CCCC
Confidence            467799999999999999999999999999999999999999999999 999999999999976      4454  8899


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCcccccC-CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhc
Q 040660           77 GTPLHHAAKRGLERTVKLLLSYGANALVLND-DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL  155 (487)
Q Consensus        77 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~  155 (487)
                      .||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|...
T Consensus       118 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~  194 (236)
T 1ikn_D          118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-LTWGR  194 (236)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-GCTTS
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH-HHHcc
Confidence            9999999999999999999999999999998 99999999999999999999999999999  99999999999 99999


Q ss_pred             CCHHHHHHhhcCCCCCC
Q 040660          156 LSRKVWVAVLPTGSRNP  172 (487)
Q Consensus       156 ~~~~~~~~Ll~~g~~~~  172 (487)
                      ++.+++++|+++|++..
T Consensus       195 ~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          195 PSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             SCHHHHHHHHTTSCGGG
T ss_pred             CchHHHHHHHHcchhhh
Confidence            99999999999999753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=3.9e-30  Score=228.63  Aligned_cols=131  Identities=37%  Similarity=0.512  Sum_probs=123.9

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.. |+.+++++|+++|+++|.+  |.+|+||||+
T Consensus        33 ~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gadvn~~--d~~G~TpLh~  109 (169)
T 4gpm_A           33 SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDGRTPLHH  109 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHH
Confidence            478899999999999999999999999999999999999999999999 9999999999999999998  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS  136 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  136 (487)
                      |+..|+.++|++|+++|++++.+|.+|+||||+|+.+|+.++|++|+++|++++
T Consensus       110 A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          110 AAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            999999999999999999999999999999999999999999999999999986

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.2e-30  Score=247.08  Aligned_cols=209  Identities=22%  Similarity=0.170  Sum_probs=161.3

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCC--------CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCC
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAG--------LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR   74 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--------~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~   74 (487)
                      -|+.+.++|+.||+.|+.++|++||+.|++        ++..|..|.||||+|+..++...++++|++.|+++|.+  |.
T Consensus         7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~--d~   84 (269)
T 4b93_B            7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT--SQ   84 (269)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC--CT
T ss_pred             cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc--CC
Confidence            366788999999999999999999998875        56678889999999998833346899999999999998  99


Q ss_pred             CCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh
Q 040660           75 HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ  154 (487)
Q Consensus        75 ~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~  154 (487)
                      +|+||||+|+..|+.++|++|++.|++++.++.+|.||||+|+..++.+++++|+++|++++  .+|..|.|||| +|+.
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~-~A~~  161 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLI-YACS  161 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HHHH
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999  99999999999 8999


Q ss_pred             cCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh--cccCCCCCCCCCCceee
Q 040660          155 LLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK--ANLEEPKFQHSDPSVTI  216 (487)
Q Consensus       155 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~i  216 (487)
                      .++.+++++|+++|++++..+..+..+++.+...+....+..|..  +.++..+..+.+|+.+.
T Consensus       162 ~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  225 (269)
T 4b93_B          162 GGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA  225 (269)
T ss_dssp             TTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred             CCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            999999999999999999999899999999988888888887764  34555555666666544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.6e-29  Score=250.50  Aligned_cols=192  Identities=24%  Similarity=0.232  Sum_probs=171.9

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+
T Consensus        54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~--~~~g~t~L~~  130 (351)
T 3utm_A           54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY-GHYEVTELLLKHGACVNAM--DLWQFTPLHE  130 (351)
T ss_dssp             SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHH
Confidence            467789999999999999999999999999999999999999999999 9999999999999999987  8899999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCccccc------------------------------------------------------CC
Q 040660           83 AAKRGLERTVKLLLSYGANALVLN------------------------------------------------------DD  108 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d------------------------------------------------------~~  108 (487)
                      |+..|+.+++++|+++|++++..+                                                      ..
T Consensus       131 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  210 (351)
T 3utm_A          131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS  210 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCC
Confidence            999999999999999999887654                                                      45


Q ss_pred             CCCHHHHHHHc---CCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhcccc
Q 040660          109 CQTPLEVARAK---GFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPS  185 (487)
Q Consensus       109 g~TpL~~A~~~---g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~  185 (487)
                      |.||||+|+..   +..+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..+++.+
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A  287 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLH-VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA  287 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            67889999988   45789999999999998  89999999999 89999999999999999999998888888888888


Q ss_pred             ccccchHHHHHHHhc
Q 040660          186 LLDARPRMVIALWKA  200 (487)
Q Consensus       186 ~~~~~~~~~~~l~~~  200 (487)
                      ...+....+..|...
T Consensus       288 ~~~~~~~~v~~Ll~~  302 (351)
T 3utm_A          288 ALAGHLQTCRLLLSY  302 (351)
T ss_dssp             HHHTCHHHHHHHHHT
T ss_pred             HHcCcHHHHHHHHHc
Confidence            888888888777643

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.97  E-value=1.3e-29  Score=235.13  Aligned_cols=164  Identities=21%  Similarity=0.194  Sum_probs=158.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGA-GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      .|..|.||||+|+..|+.+++++|++++. +++.++..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||
T Consensus        54 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~  130 (223)
T 2f8y_A           54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAV--DDLGKSALH  130 (223)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTTSCBHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh-CcHHHHHHHHHcCCCCcCc--CCCCCcHHH
Confidence            46789999999999999999999999987 8999999999999999999 9999999999999999998  899999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW  161 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~  161 (487)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .+|..|.|||+ +|...++.+++
T Consensus       131 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~  207 (223)
T 2f8y_A          131 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRD-IAQERMHHDIV  207 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHH-HHHHhcchHHH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999 99999999999


Q ss_pred             HHhhcCCCCCC
Q 040660          162 VAVLPTGSRNP  172 (487)
Q Consensus       162 ~~Ll~~g~~~~  172 (487)
                      ++|+++|+...
T Consensus       208 ~~L~~~g~~~~  218 (223)
T 2f8y_A          208 RLLDEYNLVRS  218 (223)
T ss_dssp             HHHHHTTCSSC
T ss_pred             HHHHHcCCCcc
Confidence            99999999753

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.97  E-value=1.4e-29  Score=236.37  Aligned_cols=191  Identities=19%  Similarity=0.193  Sum_probs=178.2

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      +..+.++||+|++.|+.+.++.|++.+.. ++.+|..|.||||+|+.. |+.+++++|++.|++++.+  |..|.||||+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~   79 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHI   79 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHc-CcHHHHHHHHHhCCCCCCc--CCCCCCHHHH
Confidence            34578999999999999999999988644 778899999999999999 9999999999999999998  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++  .+|..|.|||| .|+..++.++++
T Consensus        80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~  156 (231)
T 3aji_A           80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMH-RAAAKGNLKMVH  156 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHH
T ss_pred             HHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999999  99999999999 899999999999


Q ss_pred             HhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc
Q 040660          163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA  200 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (487)
                      +|+..|++.+.++..+..+++.+...+....+..|...
T Consensus       157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  194 (231)
T 3aji_A          157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ  194 (231)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            99999999999888888888888888888888777643

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1.6e-29  Score=221.25  Aligned_cols=153  Identities=25%  Similarity=0.307  Sum_probs=147.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660            7 KEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK   85 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~   85 (487)
                      +.|+||+|+..|+.++++.|++. +.+++.+|..|.||||+ +.. |+.+++++|+++|++++.+  |..|.||||+|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~   77 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMF-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAAR   77 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHc-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHH
Confidence            67999999999999999999999 45899999999999999 888 9999999999999999998  8999999999999


Q ss_pred             hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660           86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL  165 (487)
Q Consensus        86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll  165 (487)
                      .|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++  .+|..|.|||| +|...++.+++++|+
T Consensus        78 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~-~A~~~~~~~~v~~Ll  153 (156)
T 1bd8_A           78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLE-LALQRGAQDLVDILQ  153 (156)
T ss_dssp             TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHH-HHHHSCCHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999 8988  99999999999 999999999999998


Q ss_pred             cC
Q 040660          166 PT  167 (487)
Q Consensus       166 ~~  167 (487)
                      ++
T Consensus       154 ~~  155 (156)
T 1bd8_A          154 GH  155 (156)
T ss_dssp             TT
T ss_pred             hh
Confidence            64

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=1.9e-30  Score=250.87  Aligned_cols=189  Identities=17%  Similarity=0.096  Sum_probs=170.3

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|.+|.||||+|+..|+.++|++|+++|++++.+|  |.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~t~L~~  101 (285)
T 3kea_A           27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQF--DDKGNTALYY  101 (285)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTS-SSCHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCcHHHH
Confidence            47889999999999999999999999999998874  89999999999 9999999999999999997  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCC-CCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDC-QTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW  161 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g-~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~  161 (487)
                      |+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|+++|++..  .. ..|.|||| +|+..++.+++
T Consensus       102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~-~~g~t~L~-~A~~~g~~~~v  177 (285)
T 3kea_A          102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DL-AILLSCIH-ITIKNGHVDMM  177 (285)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CC-STHHHHHH-HHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cc-cCCccHHH-HHHHcChHHHH
Confidence            999999999999999999999999999 799999999999999999999998763  11 38899999 89999999999


Q ss_pred             HHhhcCCCCCCCCCCccchh-ccccccccchHHHHHHHhc
Q 040660          162 VAVLPTGSRNPTKPFKLELA-IYPSLLDARPRMVIALWKA  200 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~  200 (487)
                      ++|+++|++.+.++..+... ++.+...+....+..|...
T Consensus       178 ~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~  217 (285)
T 3kea_A          178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY  217 (285)
T ss_dssp             HHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred             HHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence            99999999998888777775 7777777777777766543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=2e-29  Score=258.33  Aligned_cols=208  Identities=24%  Similarity=0.201  Sum_probs=180.4

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .+.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.|++++.+  |..|.||||+
T Consensus        10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~   86 (437)
T 1n11_A           10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDDQTPLHC   86 (437)
T ss_dssp             -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCC--CCCCCCHHHH
Confidence            467899999999999999999999999999999999999999999999 9999999999999999988  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.++|++|+++|++++..|..|+||||+|+..|+.++|++|++++++.+  ..+..|.|||| +|+..++.++++
T Consensus        87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~  163 (437)
T 1n11_A           87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLH-VAAKYGKVRVAE  163 (437)
T ss_dssp             HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHH-HHHHcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999988  88899999999 899999999999


Q ss_pred             HhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc--ccCCCCCCCCCCceee
Q 040660          163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA--NLEEPKFQHSDPSVTI  216 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~i  216 (487)
                      +|+++|++.+..+..+...++.+...+....+..|...  ....+...+.+++...
T Consensus       164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  219 (437)
T 1n11_A          164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA  219 (437)
T ss_dssp             HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHH
T ss_pred             HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence            99999999888887777788888777777777766543  3333444455554433

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=3.3e-29  Score=240.58  Aligned_cols=206  Identities=22%  Similarity=0.200  Sum_probs=139.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWI-DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      +|+|+||+|++.|+.++|++|++.|++++.. +..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+|+
T Consensus         4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~   80 (285)
T 1wdy_A            4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLR--KKNGATPFLLAA   80 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHH
Confidence            4677777777777777777777777777766 56677777777777 7777777777777777766  677777777777


Q ss_pred             HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccc----------ccCCCCHHHHHhhh
Q 040660           85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLR----------ELYGPGFLELLAPQ  154 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------d~~G~t~L~~~a~~  154 (487)
                      ..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++  ..          +..|.|||| .|..
T Consensus        81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~~~~~~~~~g~t~L~-~A~~  157 (285)
T 1wdy_A           81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALM-DAAE  157 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCCCCHHHHHTTCCCCCHHH-HHHH
T ss_pred             HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc--cccccHHHHHhhccCCCcHHH-HHHH
Confidence            7777777777777777777777777777777777777777777777777766  44          566777777 6667


Q ss_pred             cCCHHHHHHhhcC-CCCCCCCCCccchhccccccccc----hHHHHHHH--hcccCCCCCCCCCCceeee
Q 040660          155 LLSRKVWVAVLPT-GSRNPTKPFKLELAIYPSLLDAR----PRMVIALW--KANLEEPKFQHSDPSVTIV  217 (487)
Q Consensus       155 ~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~--~~~~~~~~~~~~~~~~~i~  217 (487)
                      .++.+++++|++. |.+.+..+..+...++.+.....    ...+..|.  +..++..+..+.+++....
T Consensus       158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~  227 (285)
T 1wdy_A          158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV  227 (285)
T ss_dssp             HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            7777777777765 77666666555555555554333    33333333  2334444455556655444

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=2e-30  Score=246.33  Aligned_cols=163  Identities=18%  Similarity=0.073  Sum_probs=152.5

Q ss_pred             CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCCcc-----------CCCCChHHHHHHhCCCcHHHHHHHHHcCCCcc
Q 040660            3 LQQSKEELLYQQVNY---GNVEGIKALCRDGAGLEWI-----------DKEGKTPLIAACMNPGLYDVAKTLIELGAKVD   68 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~-----------d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~   68 (487)
                      .|..|+||||+|+..   |+.++|++|++.|++++..           |..|.||||+|+.. |+.+++++|+++|++++
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~  117 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENGADVH  117 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCTT
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc-CCHHHHHHHHHcCCCCC
Confidence            478899999999999   9999999999998877633           47899999999999 99999999999999999


Q ss_pred             ccCCCCC-------------CCcHHHHHHHhCCHHHHHHHHH---cCCCcccccCCCCCHHHHHHH--cCCHH-------
Q 040660           69 AYRPGRH-------------GGTPLHHAAKRGLERTVKLLLS---YGANALVLNDDCQTPLEVARA--KGFTN-------  123 (487)
Q Consensus        69 ~~~~d~~-------------g~TpLh~Aa~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpL~~A~~--~g~~~-------  123 (487)
                      .+  |..             |.||||+|+..|+.+++++|++   .|++++.+|.+|+||||+|+.  .++.+       
T Consensus       118 ~~--~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~  195 (256)
T 2etb_A          118 LR--ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH  195 (256)
T ss_dssp             CC--CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             cc--cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence            98  665             9999999999999999999999   999999999999999999999  88988       


Q ss_pred             HHHHHHhCCCcc-------cccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660          124 VVRAIENHICIF-------SGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN  171 (487)
Q Consensus       124 ~v~~Ll~~ga~~-------~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~  171 (487)
                      +|++|+++|+++       +  .+|..|.|||| +|+..++.+++++|+++|...
T Consensus       196 iv~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~  247 (256)
T 2etb_A          196 MYDGLLQMGARLCPTVQLEE--ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSG  247 (256)
T ss_dssp             HHHHHHHHHHHHSTTCCGGG--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCccccccccc--ccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCC
Confidence            999999999999       7  89999999999 999999999999999988764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.96  E-value=7.6e-30  Score=245.49  Aligned_cols=161  Identities=20%  Similarity=0.228  Sum_probs=153.5

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHH-----hCCCcHHHHHHHHHcCCCccccCCCCCC
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGA-GLEWIDKEGKTPLIAAC-----MNPGLYDVAKTLIELGAKVDAYRPGRHG   76 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpL~~A~-----~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   76 (487)
                      .|.+|+||||+|+..|+.++|++|++.|+ +++.+|..|.||||+|+     .. ++.+++++|++.|.+++..  |..|
T Consensus       107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~--~~~g  183 (276)
T 4hbd_A          107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKA--SQAG  183 (276)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCC--TTTC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCcccc--CCCC
Confidence            47889999999999999999999999998 99999999999999999     55 8899999999999988887  8899


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHh-CCCcccccccccCCCCHHHHHhhhc
Q 040660           77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN-HICIFSGWLRELYGPGFLELLAPQL  155 (487)
Q Consensus        77 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~  155 (487)
                      .||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..|+.++|++|++ +|++++  .+|..|.|||| +|...
T Consensus       184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~-~A~~~  260 (276)
T 4hbd_A          184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALM-VALDA  260 (276)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHH-HHHHc
Confidence            999999999999999999999999999999999999999999999999999999 899999  99999999999 99999


Q ss_pred             CCHHHHHHhhcCCC
Q 040660          156 LSRKVWVAVLPTGS  169 (487)
Q Consensus       156 ~~~~~~~~Ll~~g~  169 (487)
                      ++.+++++|++++.
T Consensus       261 g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          261 GQSEIASMLYSRMN  274 (276)
T ss_dssp             TCHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHhccC
Confidence            99999999997653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=1.2e-29  Score=254.80  Aligned_cols=191  Identities=16%  Similarity=0.094  Sum_probs=178.9

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC---CCccccCCCCCCCcH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG---AKVDAYRPGRHGGTP   79 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g---a~~~~~~~d~~g~Tp   79 (487)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++++   ++++..  |..|.||
T Consensus       162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~--d~~g~t~  238 (373)
T 2fo1_E          162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEEL--DRNGMTA  238 (373)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCC--CTTSCCH
T ss_pred             CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhc--CCCCCCH
Confidence            467899999999999999999999999999999999999999999999 9999999999998   799987  9999999


Q ss_pred             HHHHHHhC---CHHHHHHHHHcCCCccc--------ccCCCCCHHHHHHHcCCHHHHHHHHhCC-CcccccccccCCCCH
Q 040660           80 LHHAAKRG---LERTVKLLLSYGANALV--------LNDDCQTPLEVARAKGFTNVVRAIENHI-CIFSGWLRELYGPGF  147 (487)
Q Consensus        80 Lh~Aa~~g---~~~~v~~Ll~~ga~~~~--------~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~G~t~  147 (487)
                      ||+|+..|   +.+++++|++.|++++.        .|..|+||||+|+..|+.++|++|++++ ++++  .+|..|.||
T Consensus       239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n--~~d~~g~Tp  316 (373)
T 2fo1_E          239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTP  316 (373)
T ss_dssp             HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCH
T ss_pred             HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc--CcCCCCCCH
Confidence            99999998   89999999999999886        6779999999999999999999999886 9998  999999999


Q ss_pred             HHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660          148 LELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       148 L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                      || +|+..++.+++++|+++|++.+.++..+..++..+...+....+..|..
T Consensus       317 L~-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~  367 (373)
T 2fo1_E          317 IM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR  367 (373)
T ss_dssp             HH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HH-HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99 8999999999999999999999999888888888888888887776654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=5.9e-29  Score=238.77  Aligned_cols=190  Identities=21%  Similarity=0.191  Sum_probs=179.5

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+|
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A  112 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVNEC--DFYGFTAFMEA  112 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTTCCBHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CcccCCHHHHH
Confidence            66789999999999999999999999999999999999999999999 9999999999999999998  99999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccc----------cCCCCCHHHHHHHcCCHHHHHHHHhC-CCcccccccccCCCCHHHHHh
Q 040660           84 AKRGLERTVKLLLSYGANALVL----------NDDCQTPLEVARAKGFTNVVRAIENH-ICIFSGWLRELYGPGFLELLA  152 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~----------d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~G~t~L~~~a  152 (487)
                      +..|+.+++++|++.|++++..          +..|.||||+|+..|+.+++++|+++ |++++  ..|..|.|||| .|
T Consensus       113 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~-~a  189 (285)
T 1wdy_A          113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALI-HA  189 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHH-HH
T ss_pred             HHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCCCHHH-HH
Confidence            9999999999999999999987          78899999999999999999999998 99999  99999999999 77


Q ss_pred             hhcCC----HHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660          153 PQLLS----RKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       153 ~~~~~----~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                      ...+.    .+++++|+++|++.+.++..+..+++.+...+....+..|..
T Consensus       190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            77777    899999999999999988888889998888888888887765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=6.6e-30  Score=242.71  Aligned_cols=191  Identities=18%  Similarity=0.171  Sum_probs=169.7

Q ss_pred             CchHHHHHHHHcCCHH----HHHHHHHcCCCCCc----cCCCCChHHHHHHhC--CCcHHHHHHHHHcCCCcccc-----
Q 040660            6 SKEELLYQQVNYGNVE----GIKALCRDGAGLEW----IDKEGKTPLIAACMN--PGLYDVAKTLIELGAKVDAY-----   70 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~----~v~~Ll~~g~~~~~----~d~~G~TpL~~A~~~--~g~~~~v~~Ll~~ga~~~~~-----   70 (487)
                      .|+|+||+|++.|+.+    ++++|++.|++++.    +|..|.||||+|+..  .|+.+++++|++.|++++..     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            3899999999999997    66777779999998    899999999999975  37789999999999887633     


Q ss_pred             ----CCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCC-------------CCCHHHHHHHcCCHHHHHHHHh---
Q 040660           71 ----RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDD-------------CQTPLEVARAKGFTNVVRAIEN---  130 (487)
Q Consensus        71 ----~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~-------------g~TpL~~A~~~g~~~~v~~Ll~---  130 (487)
                          +.|..|.||||+|+..|+.+++++|+++|++++.+|..             |+||||+|+..|+.++|++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                12578999999999999999999999999999999986             9999999999999999999999   


Q ss_pred             CCCcccccccccCCCCHHHHHhhh--cCCHH-------HHHHhhcCCCCC-------CCCCCccchhccccccccchHHH
Q 040660          131 HICIFSGWLRELYGPGFLELLAPQ--LLSRK-------VWVAVLPTGSRN-------PTKPFKLELAIYPSLLDARPRMV  194 (487)
Q Consensus       131 ~ga~~~~~~~d~~G~t~L~~~a~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~  194 (487)
                      +|++++  .+|..|.|||| +|+.  .++.+       ++++|+++|++.       +.++..+..+++.+...+....+
T Consensus       161 ~ga~~n--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          161 QPASLE--ATDSLGNTVLH-ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             CCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cCCCcC--ccCCCCCCHHH-HHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence            999999  99999999999 6766  77887       999999999998       77888888888888887777777


Q ss_pred             HHHHh
Q 040660          195 IALWK  199 (487)
Q Consensus       195 ~~l~~  199 (487)
                      ..|..
T Consensus       238 ~~Ll~  242 (256)
T 2etb_A          238 RHILQ  242 (256)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            76653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=5.1e-30  Score=245.97  Aligned_cols=164  Identities=21%  Similarity=0.098  Sum_probs=150.8

Q ss_pred             CCCchHHHHHHHHc---CCHHHHHHHHHcCCCC-------Cc----cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccc
Q 040660            4 QQSKEELLYQQVNY---GNVEGIKALCRDGAGL-------EW----IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA   69 (487)
Q Consensus         4 d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~-------~~----~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~   69 (487)
                      |..|+||||+|+..   |+.++|++|+++|+++       +.    +|..|.||||+|+.. |+.+++++|+++|++++.
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcCc
Confidence            67899999999987   9999999999998652       22    567899999999999 999999999999999999


Q ss_pred             cCCCC--------------CCCcHHHHHHHhCCHHHHHHHHH---cCCCcccccCCCCCHHHHHHHcCC---------HH
Q 040660           70 YRPGR--------------HGGTPLHHAAKRGLERTVKLLLS---YGANALVLNDDCQTPLEVARAKGF---------TN  123 (487)
Q Consensus        70 ~~~d~--------------~g~TpLh~Aa~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpL~~A~~~g~---------~~  123 (487)
                      +  +.              .|.||||+|+..|+.++|++|++   .|++++.+|.+|+||||+|+..|+         .+
T Consensus       130 ~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~  207 (273)
T 2pnn_A          130 A--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS  207 (273)
T ss_dssp             C--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             c--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHH
Confidence            8  55              79999999999999999999999   999999999999999999999998         89


Q ss_pred             HHHHHHhCCCcccc-----cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660          124 VVRAIENHICIFSG-----WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN  171 (487)
Q Consensus       124 ~v~~Ll~~ga~~~~-----~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~  171 (487)
                      ++++|+++|++++.     ..+|..|.|||| +|+..++.+++++|+++|+..
T Consensus       208 ~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~d  259 (273)
T 2pnn_A          208 MYNEILILGAKLHPTLKLEEITNRKGLTPLA-LAASSGKIGVLAYILQREIHE  259 (273)
T ss_dssp             HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTC-
T ss_pred             HHHHHHHhhhhcccccccccccCCCCCCHHH-HHHHhChHHHHHHHHHCCCCC
Confidence            99999999999862     258999999999 999999999999999999953

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=6.4e-30  Score=243.26  Aligned_cols=164  Identities=18%  Similarity=0.093  Sum_probs=150.6

Q ss_pred             CCCchHHHHHHH---HcCCHHHHHHHHHcCCC-----------CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccc
Q 040660            4 QQSKEELLYQQV---NYGNVEGIKALCRDGAG-----------LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA   69 (487)
Q Consensus         4 d~~g~t~L~~Aa---~~g~~~~v~~Ll~~g~~-----------~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~   69 (487)
                      |..|+||||+|+   +.|+.++|++|++.|++           ++..|..|.||||+|+.. |+.+++++|+++|++++.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT-TCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc-CCHHHHHHHHhCCCCcCc
Confidence            477999999999   77999999999998744           445566899999999999 999999999999999999


Q ss_pred             cCCC--------------CCCCcHHHHHHHhCCHHHHHHHHH---cCCCcccccCCCCCHHHHHHHcCC---------HH
Q 040660           70 YRPG--------------RHGGTPLHHAAKRGLERTVKLLLS---YGANALVLNDDCQTPLEVARAKGF---------TN  123 (487)
Q Consensus        70 ~~~d--------------~~g~TpLh~Aa~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpL~~A~~~g~---------~~  123 (487)
                      +  +              ..|.||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+..++         .+
T Consensus       122 ~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~  199 (260)
T 3jxi_A          122 Q--ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK  199 (260)
T ss_dssp             C--CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHH
T ss_pred             c--ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHH
Confidence            7  6              689999999999999999999999   999999999999999999999888         79


Q ss_pred             HHHHHHhCCCcccc-----cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660          124 VVRAIENHICIFSG-----WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN  171 (487)
Q Consensus       124 ~v~~Ll~~ga~~~~-----~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~  171 (487)
                      ++++|+++|++++.     ..+|..|.|||| +|+..++.+++++|+++|...
T Consensus       200 ~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~  251 (260)
T 3jxi_A          200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAAKTGKIGIFQHIIRREIAD  251 (260)
T ss_dssp             HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCcccccccchhhcccCCCCCHHH-HHHHcCCHHHHHHHHHhCCCc
Confidence            99999999999831     279999999999 999999999999999998865

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=8.3e-29  Score=253.75  Aligned_cols=176  Identities=20%  Similarity=0.163  Sum_probs=87.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK   85 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~   85 (487)
                      +|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. |+.+++++|+++|++++..  |..|.||||+|+.
T Consensus       211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~  287 (437)
T 1n11_A          211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE-GHAEMVALLLSKQANGNLG--NKSGLTPLHLVAQ  287 (437)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC-CCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHH
Confidence            344444444444444444444444444444444444555555444 4445555555544444444  4445555555555


Q ss_pred             hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660           86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL  165 (487)
Q Consensus        86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll  165 (487)
                      .|+.+++++|+++|++++.+|..|+||||+|+.+|+.++|++|+++|++++  .+|..|.|||| +|+..++.+++++|+
T Consensus       288 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~L~-~A~~~g~~~iv~~Ll  364 (437)
T 1n11_A          288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN--AKTKLGYSPLH-QAAQQGHTDIVTLLL  364 (437)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC--CCCCCCCCHHH-HHHHCChHHHHHHHH
Confidence            555555555555555555555555555555555555555555555555544  44555555555 444445555555555


Q ss_pred             cCCCCCCCCCCccchhcccccc
Q 040660          166 PTGSRNPTKPFKLELAIYPSLL  187 (487)
Q Consensus       166 ~~g~~~~~~~~~~~~~~~~~~~  187 (487)
                      ++|++.+..+..+..++..+..
T Consensus       365 ~~ga~~~~~~~~g~t~l~~A~~  386 (437)
T 1n11_A          365 KNGASPNEVSSDGTTPLAIAKR  386 (437)
T ss_dssp             HTTCCSCCCCSSSCCHHHHHHH
T ss_pred             HCcCCCCCCCCCCCCHHHHHHH
Confidence            5555544444444444444333

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=8.7e-29  Score=245.12  Aligned_cols=180  Identities=23%  Similarity=0.204  Sum_probs=166.5

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----------
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-----------   71 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-----------   71 (487)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..+           
T Consensus        87 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~  165 (351)
T 3utm_A           87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK-NRVEVCSLLLSHGADPTLVNCHGKSAVDMAP  165 (351)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCS
T ss_pred             cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCccccCCCCcchHHHh
Confidence            467899999999999999999999999999999999999999999999 99999999999999987641           


Q ss_pred             -----------------------------------------CCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCcccccC
Q 040660           72 -----------------------------------------PGRHGGTPLHHAAKR---GLERTVKLLLSYGANALVLND  107 (487)
Q Consensus        72 -----------------------------------------~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~d~  107 (487)
                                                               .+..|.||||+|+..   +..+++++|++.|++++.+|.
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~  245 (351)
T 3utm_A          166 TPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK  245 (351)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT
T ss_pred             hhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC
Confidence                                                     135678999999999   558999999999999999999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660          108 DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL  186 (487)
Q Consensus       108 ~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  186 (487)
                      .|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..++..+.
T Consensus       246 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n--~~d~~g~t~L~-~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~  321 (351)
T 3utm_A          246 DFMTPLHVAAERAHNDVMEVLHKHGAKMN--ALDSLGQTALH-RAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN  321 (351)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence            99999999999999999999999999999  99999999999 899999999999999999999888877777666553

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=6e-30  Score=257.01  Aligned_cols=191  Identities=16%  Similarity=0.142  Sum_probs=176.0

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHH--------HcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCC
Q 040660            5 QSKEELLYQQVNYGNVEGIKALC--------RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG   76 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll--------~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   76 (487)
                      ..|+||||+|+..|+.++|++|+        +.|+++|.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|
T Consensus       123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~~~~~--~~~g  199 (373)
T 2fo1_E          123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGADPTIY--NKSE  199 (373)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTC
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHc-ChHHHHHHHHHCCCCCccc--CCCC
Confidence            68999999999999998887776        78999999999999999999999 9999999999999999998  8999


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcC---CCcccccCCCCCHHHHHHHcC---CHHHHHHHHhCCCcccc------cccccCC
Q 040660           77 GTPLHHAAKRGLERTVKLLLSYG---ANALVLNDDCQTPLEVARAKG---FTNVVRAIENHICIFSG------WLRELYG  144 (487)
Q Consensus        77 ~TpLh~Aa~~g~~~~v~~Ll~~g---a~~~~~d~~g~TpL~~A~~~g---~~~~v~~Ll~~ga~~~~------~~~d~~G  144 (487)
                      .||||+|+..|+.+++++|++.+   ++++..|..|+||||+|+..+   +.+++++|+++|++++.      ...|..|
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g  279 (373)
T 2fo1_E          200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  279 (373)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccC
Confidence            99999999999999999999988   899999999999999999998   89999999999999872      1256789


Q ss_pred             CCHHHHHhhhcCCHHHHHHhhcCC-CCCCCCCCccchhccccccccchHHHHHHHh
Q 040660          145 PGFLELLAPQLLSRKVWVAVLPTG-SRNPTKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       145 ~t~L~~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                      .|||| +|+..++.+++++|+..+ ++.+..+..+..+++.+...+....+..|..
T Consensus       280 ~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~  334 (373)
T 2fo1_E          280 RTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ  334 (373)
T ss_dssp             CCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCHHH-HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999 899999999999999876 8999888888899998888888888887764

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=9.9e-30  Score=243.96  Aligned_cols=202  Identities=19%  Similarity=0.221  Sum_probs=171.2

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHH----cCCCCC----ccCCCCChHHHHHHhC--CCcHHHHHHHHHcCCCc-----
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCR----DGAGLE----WIDKEGKTPLIAACMN--PGLYDVAKTLIELGAKV-----   67 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~----~~d~~G~TpL~~A~~~--~g~~~~v~~Ll~~ga~~-----   67 (487)
                      .|..|+|+||+|++.|+.++|+.|++    .+++++    ..|..|+||||+|+..  .|+.+++++|+++|+++     
T Consensus         9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~   88 (273)
T 2pnn_A            9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ   88 (273)
T ss_dssp             --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred             CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence            57889999999999999999998887    466665    4588999999999963  38899999999998653     


Q ss_pred             --cc--cCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccC--------------CCCCHHHHHHHcCCHHHHHHHH
Q 040660           68 --DA--YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLND--------------DCQTPLEVARAKGFTNVVRAIE  129 (487)
Q Consensus        68 --~~--~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~--------------~g~TpL~~A~~~g~~~~v~~Ll  129 (487)
                        +.  .+.|..|.||||+|+..|+.++|++|+++|++++.++.              .|+||||+|+..|+.++|++|+
T Consensus        89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  168 (273)
T 2pnn_A           89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL  168 (273)
T ss_dssp             HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred             HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence              22  22367899999999999999999999999999999997              7999999999999999999999


Q ss_pred             h---CCCcccccccccCCCCHHHHHhhhcCC---------HHHHHHhhcCCCCCC-------CCCCccchhccccccccc
Q 040660          130 N---HICIFSGWLRELYGPGFLELLAPQLLS---------RKVWVAVLPTGSRNP-------TKPFKLELAIYPSLLDAR  190 (487)
Q Consensus       130 ~---~ga~~~~~~~d~~G~t~L~~~a~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~~~~~~~~~~~~~~  190 (487)
                      +   +|++++  .+|..|.|||| +|+..++         .+++++|+.+|++.+       .++..+..+++.+...+.
T Consensus       169 ~~~~~gad~~--~~d~~g~tpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~  245 (273)
T 2pnn_A          169 QNSWQPADIS--ARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK  245 (273)
T ss_dssp             HCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             hcccCCCCce--eeCCCCCcHHH-HHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence            9   999999  99999999999 7777666         799999999999886       367788888888888888


Q ss_pred             hHHHHHHHhcccCCCCC
Q 040660          191 PRMVIALWKANLEEPKF  207 (487)
Q Consensus       191 ~~~~~~l~~~~~~~~~~  207 (487)
                      ...+..|......+|..
T Consensus       246 ~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          246 IGVLAYILQREIHEPEC  262 (273)
T ss_dssp             HHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHCCCCCchh
Confidence            88888877665544443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=1.4e-28  Score=243.39  Aligned_cols=190  Identities=20%  Similarity=0.174  Sum_probs=147.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-------------
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDK-EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-------------   71 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-------------   71 (487)
                      +|+|+||.||+.|++++|++||++|+++|.++. .|+||||+|+.. |+.++|++||++|++++.++             
T Consensus        24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            478999999999999999999999999999876 599999999999 99999999999998876541             


Q ss_pred             ------------------CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccc----------cCCCCCHHHHHHHcCCHH
Q 040660           72 ------------------PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVL----------NDDCQTPLEVARAKGFTN  123 (487)
Q Consensus        72 ------------------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~----------d~~g~TpL~~A~~~g~~~  123 (487)
                                        .|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                              2567778888888888888888888888776643          345778888888888888


Q ss_pred             HHHHHHh-CCCcccccccccCCCCHHHHHhhhcC---CHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          124 VVRAIEN-HICIFSGWLRELYGPGFLELLAPQLL---SRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       124 ~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~~---~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                      +|++|++ .|++++  .+|..|.|+|+.++....   ..+++++|+++|++.+.++..+...++.....+....+..|.
T Consensus       183 ~v~~LL~~~gad~n--~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll  259 (337)
T 4g8k_A          183 VLKILLDEMGADVN--ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL  259 (337)
T ss_dssp             HHHHHHHHSCCCTT--CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhccCCCcC--ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence            8888874 577777  777888888873332222   245677788888887777766777777666666666666554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.96  E-value=2.7e-28  Score=228.18  Aligned_cols=195  Identities=23%  Similarity=0.206  Sum_probs=176.8

Q ss_pred             CCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            2 GLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      .+|..|.|+||+|++.|+.+++++|++.|++++.+|..|.||||+|+.. |+.+++++|++.|++++... +..|.||||
T Consensus         4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~-~~~~~t~L~   81 (240)
T 3eu9_A            4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYISKGAIVDQLG-GDLNSTPLH   81 (240)
T ss_dssp             CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCB-TTTTBCHHH
T ss_pred             ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHh-CCHHHHHHHHHcCCcchhhc-CCcCCChhH
Confidence            4688999999999999999999999999999999999999999999999 99999999999999998762 566999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW  161 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~  161 (487)
                      +|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++  .++..|.||||+++......+++
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~  159 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLMWAAYRTHSVDPT  159 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHCCSSTTH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHHHHHHhCChHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  99999999999444456668999


Q ss_pred             HHhhcCCCCCCCCCC-ccchhccccccccchHHHHHHHhc
Q 040660          162 VAVLPTGSRNPTKPF-KLELAIYPSLLDARPRMVIALWKA  200 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~  200 (487)
                      ++|+..|.+.+..+. .+..+++.+...+....+..|...
T Consensus       160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  199 (240)
T 3eu9_A          160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA  199 (240)
T ss_dssp             HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            999999999887775 667777777777777777776643

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.96  E-value=4.3e-29  Score=249.70  Aligned_cols=160  Identities=17%  Similarity=0.082  Sum_probs=141.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHc----CCCCCc-----------------cCCCCChHHHHHHhCCC--cHHHHHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRD----GAGLEW-----------------IDKEGKTPLIAACMNPG--LYDVAKTLIE   62 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~----g~~~~~-----------------~d~~G~TpL~~A~~~~g--~~~~v~~Ll~   62 (487)
                      +|.||||+|+..|+.++|++|+++    |++++.                 +|..|.||||+|+.. |  +.+++++|++
T Consensus        83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~~~v~~Ll~  161 (364)
T 3ljn_A           83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL-GPEYLEMIKILVQ  161 (364)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS-CGGGHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc-CCchHHHHHHHHH
Confidence            444555555555555555555554    444444                 788999999999999 9  9999999999


Q ss_pred             cCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC-----cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc
Q 040660           63 LGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN-----ALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSG  137 (487)
Q Consensus        63 ~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~-----~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~  137 (487)
                      +|++++.+  |..|.||||+|+..|+.++|++|+++|++     ++.+|..|+||||+|+..|+.++|++|+++|++++ 
T Consensus       162 ~ga~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~-  238 (364)
T 3ljn_A          162 LGASPTAK--DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-  238 (364)
T ss_dssp             HTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT-
T ss_pred             cCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence            99999998  99999999999999999999999999999     99999999999999999999999999999999999 


Q ss_pred             cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660          138 WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN  171 (487)
Q Consensus       138 ~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~  171 (487)
                       .+|..|.|||| +|+..++.+++++|+++|++.
T Consensus       239 -~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          239 -MEDNEHTVPLY-LSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             -CCCTTSCCHHH-HHHHTCCHHHHHHHHHHSCHH
T ss_pred             -CCCCCCCCHHH-HHHHhChHHHHHHHHHcCCch
Confidence             99999999999 999999999999999998875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=1.1e-29  Score=239.09  Aligned_cols=164  Identities=14%  Similarity=0.062  Sum_probs=123.8

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA   84 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa   84 (487)
                      ..|.||||.|++.|+.++++.||++|++++.. ..|.||||+|+.. |+.+++++|++.|++++.+  |..|.||||+|+
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~   78 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNAV   78 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHHH
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHH
Confidence            46999999999999999999999999999864 7899999999999 9999999999999999998  999999999999


Q ss_pred             HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCC-CHHHHHh--hhcCCHHHH
Q 040660           85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGP-GFLELLA--PQLLSRKVW  161 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~-t~L~~~a--~~~~~~~~~  161 (487)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++  .++..|. |||| +|  ...++.+++
T Consensus        79 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~-~a~~~~~g~~~~~  155 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQCS  155 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCHH
T ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHH-HHHHhhhccHHHH
Confidence            9999999999999999999999999999999999999999999999999999  8888777 9999 77  678899999


Q ss_pred             HHhhcCCCCCCCCC
Q 040660          162 VAVLPTGSRNPTKP  175 (487)
Q Consensus       162 ~~Ll~~g~~~~~~~  175 (487)
                      ++|+..|++.+..+
T Consensus       156 ~~Ll~~~a~~~~~~  169 (239)
T 1ycs_B          156 QFLYGVQEKMGIMN  169 (239)
T ss_dssp             HHHHHHHHHTTTTG
T ss_pred             HHHHHhhhcccccc
Confidence            99999999886654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=3.2e-29  Score=242.29  Aligned_cols=181  Identities=15%  Similarity=0.099  Sum_probs=164.2

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCC-CcHHHHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG-GTPLHHA   83 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g-~TpLh~A   83 (487)
                      .+|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..| .||||+|
T Consensus        60 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~~t~L~~A  136 (285)
T 3kea_A           60 LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHA  136 (285)
T ss_dssp             CTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGC--SSSGGGSHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCcc--CCCCCCCHHHHH
Confidence            3689999999999999999999999999999999999999999999 9999999999999999998  8889 7999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCH-HHHHhhhcCCHHHHH
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGF-LELLAPQLLSRKVWV  162 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~-L~~~a~~~~~~~~~~  162 (487)
                      +..|+.+++++|+++|+++... ..|+||||+|+..|+.++|++|+++|++++  .+|..|.|| || +|...++.++++
T Consensus       137 ~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~-~A~~~~~~~~v~  212 (285)
T 3kea_A          137 VMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNKDIEMLQ  212 (285)
T ss_dssp             HHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHH-HHHHHTCHHHHH
T ss_pred             HHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHH-HHHHcCCHHHHH
Confidence            9999999999999999886322 289999999999999999999999999999  999999998 99 899999999999


Q ss_pred             HhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660          163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                      +|+++|++.+..+.       .+...+...++..|..
T Consensus       213 ~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~  242 (285)
T 3kea_A          213 ALFKYDINIYSANL-------ENVLLDDAEIAKMIIE  242 (285)
T ss_dssp             HHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHH
T ss_pred             HHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHH
Confidence            99999999987772       2333556666666653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=3.2e-29  Score=219.69  Aligned_cols=141  Identities=23%  Similarity=0.233  Sum_probs=121.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc-HHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT-PLH   81 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T-pLh   81 (487)
                      .++.|.|+||+|++.|+.++|++|+++|++++.+|..|+||||+|+ . |+.+++++|+++|++++.+  |..|.| |||
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~--d~~g~ttpL~   83 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRPVH   83 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c-CCHHHHHHHHHcCCCCCCc--CCCCCcHHHH
Confidence            3678999999999999999999999999999999999999999985 7 9999999999999999998  999999 999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLE  149 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~  149 (487)
                      +|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++  .++..|.|+.+
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~~~  149 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--GSNHARIDAAE  149 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC--ccCcCcCcccc
Confidence            9999999999999999999999999999999999999999999999999999999  99999999987

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=4.6e-29  Score=237.33  Aligned_cols=193  Identities=18%  Similarity=0.176  Sum_probs=166.4

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHH----HcCCCCCccC----CCCChHHHHHH---hCCCcHHHHHHHHHcCCC-----
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALC----RDGAGLEWID----KEGKTPLIAAC---MNPGLYDVAKTLIELGAK-----   66 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d----~~G~TpL~~A~---~~~g~~~~v~~Ll~~ga~-----   66 (487)
                      ++..++|+||.|++.|+.+.|+.|+    +.|++++..+    ..|.||||+|+   .. |+.+++++|++.|++     
T Consensus         1 ~~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            1 MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchH
Confidence            3677999999999999999655555    4899998776    67999999999   67 999999999998854     


Q ss_pred             ----ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc--------------CCCCCHHHHHHHcCCHHHHHHH
Q 040660           67 ----VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN--------------DDCQTPLEVARAKGFTNVVRAI  128 (487)
Q Consensus        67 ----~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~TpL~~A~~~g~~~~v~~L  128 (487)
                          .+....|..|+||||+|+..|+.++|++|+++|++++.+|              ..|+||||+|+..|+.++|++|
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                2222226689999999999999999999999999999998              6899999999999999999999


Q ss_pred             Hh---CCCcccccccccCCCCHHHHHhhhcCC---------HHHHHHhhcCCCCC-------CCCCCccchhcccccccc
Q 040660          129 EN---HICIFSGWLRELYGPGFLELLAPQLLS---------RKVWVAVLPTGSRN-------PTKPFKLELAIYPSLLDA  189 (487)
Q Consensus       129 l~---~ga~~~~~~~d~~G~t~L~~~a~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~~~~~~~~~~~~~  189 (487)
                      ++   +|++++  .+|..|.|||| +|+..++         .+++++|+.+|++.       +..+..+..+++.+...+
T Consensus       160 l~~~~~ga~~~--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g  236 (260)
T 3jxi_A          160 TENGHKQADLR--RQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG  236 (260)
T ss_dssp             HHCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             HhccccCCCCc--ccCCCCCcHHH-HHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence            99   999999  99999999999 7766555         69999999999987       567778888888888877


Q ss_pred             chHHHHHHHh
Q 040660          190 RPRMVIALWK  199 (487)
Q Consensus       190 ~~~~~~~l~~  199 (487)
                      ....+..|..
T Consensus       237 ~~~~v~~Ll~  246 (260)
T 3jxi_A          237 KIGIFQHIIR  246 (260)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            7777776654

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=6.3e-28  Score=225.71  Aligned_cols=192  Identities=20%  Similarity=0.169  Sum_probs=177.3

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      .+..|.|+||+|+..|+.++|++|+++|++++..+ ..|.||||+|+.. |+.+++++|++.|++++..  |..|.||||
T Consensus        38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~  114 (240)
T 3eu9_A           38 PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADPSLI--DGEGCSCIH  114 (240)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHH
T ss_pred             CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHH
Confidence            46789999999999999999999999999987655 4599999999999 9999999999999999988  899999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCC-HHHHHHHHhCCCccccccccc-CCCCHHHHHhhhcCCHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF-TNVVRAIENHICIFSGWLREL-YGPGFLELLAPQLLSRK  159 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~-~~~v~~Ll~~ga~~~~~~~d~-~G~t~L~~~a~~~~~~~  159 (487)
                      +|+..|+.+++++|+++|++++.+|..|.||||+|+..++ .+++++|+++|++++  ..+. .|.|||| +|+..++.+
T Consensus       115 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~--~~~~~~g~t~L~-~A~~~~~~~  191 (240)
T 3eu9_A          115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALH-WAVLAGNTT  191 (240)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT--CCCTTTCCCHHH-HHHHHTCHH
T ss_pred             HHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc--hhhccCCCcHHH-HHHHcCCHH
Confidence            9999999999999999999999999999999999997776 899999999999998  7786 8999999 999999999


Q ss_pred             HHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc
Q 040660          160 VWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA  200 (487)
Q Consensus       160 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  200 (487)
                      ++++|+++|++.+..+..+..++..+...+...++..|...
T Consensus       192 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~  232 (240)
T 3eu9_A          192 VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA  232 (240)
T ss_dssp             HHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence            99999999999998888888888888888888888876643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=8.2e-28  Score=233.32  Aligned_cols=159  Identities=28%  Similarity=0.331  Sum_probs=143.6

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----------
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-----------   71 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-----------   71 (487)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..+           
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~  147 (299)
T 1s70_B           69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNSEGDTPLDIAE  147 (299)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            467899999999999999999999999999999999999999999999 99999999999999987652           


Q ss_pred             -----------------------------------------------CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccc
Q 040660           72 -----------------------------------------------PGRHGGTPLHHAAKRGLERTVKLLLSYGANALV  104 (487)
Q Consensus        72 -----------------------------------------------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~  104 (487)
                                                                     .+..|.||||+|+..|+.+++++|++.|++++.
T Consensus       148 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~  227 (299)
T 1s70_B          148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI  227 (299)
T ss_dssp             SHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             hcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC
Confidence                                                           124688999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhc
Q 040660          105 LNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLP  166 (487)
Q Consensus       105 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~  166 (487)
                      +|..|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|... ..+.+..|+.
T Consensus       228 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~t~l~-~A~~~-~~~~l~~l~~  285 (299)
T 1s70_B          228 KDYDGWTPLHAAAHWGKEEACRILVENLCDME--AVNKVGQTAFD-VADED-ILGYLEELQK  285 (299)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTTT-SCCSG-GGHHHHHHHH
T ss_pred             cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHH-HHHHHHHHHH
Confidence            99999999999999999999999999999999  99999999999 77553 3444444443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=5.2e-29  Score=232.84  Aligned_cols=175  Identities=19%  Similarity=0.132  Sum_probs=148.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .+.++.|+||+|+..|+.++|++|++.|++++.+|..|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+
T Consensus        17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~n~~--d~~g~tpLh~   93 (229)
T 2vge_A           17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSP--DSHGWTPLHC   93 (229)
T ss_dssp             TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred             cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHH
Confidence            356788999999999999999999999999999999999999999999 9999999999999999988  8899999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCccccc-CCCCCHHHHH--HHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLN-DDCQTPLEVA--RAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRK  159 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A--~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~  159 (487)
                      |+..|+.+++++|++.|++++.++ .+|+||||+|  +..|+.+++++|+++|++++  .+|..|.|+++ .+....   
T Consensus        94 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~~l~-~~~~~~---  167 (229)
T 2vge_A           94 AASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG--LMNSGAVYALW-DYSAEF---  167 (229)
T ss_dssp             HHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT--TSGGGEEEESS-CBCCSS---
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc--cccCCchHHHH-HHhhcc---
Confidence            999999999999999999999986 5999999999  99999999999999999998  88888989988 333332   


Q ss_pred             HHHHhhcCCCC--CCCCCCccchhccccc
Q 040660          160 VWVAVLPTGSR--NPTKPFKLELAIYPSL  186 (487)
Q Consensus       160 ~~~~Ll~~g~~--~~~~~~~~~~~~~~~~  186 (487)
                      ..++|+..|++  .+.++..+..+++.+.
T Consensus       168 ~~~~ll~~ga~~~~~~~d~~G~TpL~~A~  196 (229)
T 2vge_A          168 GDELSFREGESVTVLRRDGPEETDWWWAA  196 (229)
T ss_dssp             TTBCCBCTTCEEEEEESSCTTCSSEEEEE
T ss_pred             ccccCccccccccccccCCCcccHHHHHH
Confidence            23567777776  3444444444444444

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=3.6e-28  Score=207.87  Aligned_cols=127  Identities=24%  Similarity=0.324  Sum_probs=79.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCC-CCcHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH-GGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~-g~TpLh~   82 (487)
                      |..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+.  |+.+++++|+++|++++.+  |.. |.||||+
T Consensus         9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~   84 (136)
T 1d9s_A            9 GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNCA--DPATLTRPVHD   84 (136)
T ss_dssp             CCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT--SCHHHHHHHHHHTCCSSCC--BTTTTBCHHHH
T ss_pred             CCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc--CCHHHHHHHHHCCCCCCCc--CCCCCCCHHHH
Confidence            4556666666666666666666666666666666666666666665  5566666666666666655  555 6666666


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI  134 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  134 (487)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            6666666666666666666666666666666666666666666666666553

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=8.1e-28  Score=213.99  Aligned_cols=140  Identities=28%  Similarity=0.368  Sum_probs=129.6

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~  108 (172)
T 3v30_A           32 PDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIY--DWNGGTPLLY  108 (172)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence            467899999999999999999999999999999999999999999999 9999999999999999998  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGF  147 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~  147 (487)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++.  ..+..|.||
T Consensus       109 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~--~~~~~~~~p  171 (172)
T 3v30_A          109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF--QSNLVPADP  171 (172)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS--CC-------
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh--cccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999988  788888776

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=5.1e-27  Score=232.09  Aligned_cols=186  Identities=25%  Similarity=0.280  Sum_probs=163.3

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCcc----------CCCCChHHHHHHhCCCcHHHHHHHHH-cCCCccccC
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWI----------DKEGKTPLIAACMNPGLYDVAKTLIE-LGAKVDAYR   71 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~----------d~~G~TpL~~A~~~~g~~~~v~~Ll~-~ga~~~~~~   71 (487)
                      .|..|.||||+|+..|+.+++++|+++|++++..          +..|.||||+|+.. |+.++|++||+ .|++++.+ 
T Consensus       121 ~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~-g~~~~v~~LL~~~gad~n~~-  198 (337)
T 4g8k_A          121 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNAC-  198 (337)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH-TCHHHHHHHHHHSCCCTTCC-
T ss_pred             hccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC-CCHHHHHHHHhccCCCcCcc-
Confidence            4678999999999999999999999999988754          45689999999999 99999999995 59999998 


Q ss_pred             CCCCCCcHHHHHHHhCC----HHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhC-CCcccccccccCCCC
Q 040660           72 PGRHGGTPLHHAAKRGL----ERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH-ICIFSGWLRELYGPG  146 (487)
Q Consensus        72 ~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~G~t  146 (487)
                       |..|.|+||+++..+.    ..++++|+++|++++.+|..|+||||+|+..|+.++|++|+++ |++++  .+|..|.|
T Consensus       199 -d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn--~~d~~G~T  275 (337)
T 4g8k_A          199 -DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--DTDSDGKT  275 (337)
T ss_dssp             -CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT--CBCTTSCB
T ss_pred             -CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc--CcCCCCCC
Confidence             9999999999887654    4688999999999999999999999999999999999999985 78998  99999999


Q ss_pred             HHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660          147 FLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       147 ~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                      ||| +|+..++.+++++|+++|++++.++     .++.+...+...++..|..
T Consensus       276 pL~-~A~~~g~~~iv~~Ll~~GAd~n~~~-----~L~~A~~~~~~~iv~~Ll~  322 (337)
T 4g8k_A          276 ALL-LAVELKLKKIAELLCKRGASTDCGD-----LVMTARRNYDHSLVKVLLS  322 (337)
T ss_dssp             HHH-HHHHTTCHHHHHHHHTTSCSSTTCC-----HHHHHHHTTCHHHHHHHHH
T ss_pred             HHH-HHHHcCCHHHHHHHHHCCCCCCCCC-----HHHHHHHcCCHHHHHHHHH
Confidence            999 8999999999999999999987665     4455555666667766654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=2.5e-27  Score=202.55  Aligned_cols=126  Identities=25%  Similarity=0.337  Sum_probs=120.5

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      ...+.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAV--DAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHH
Confidence            45688999999999999999999999999999999999999999999 9999999999999999998  89999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI  132 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  132 (487)
                      +..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999876

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=7.3e-28  Score=237.41  Aligned_cols=170  Identities=16%  Similarity=0.106  Sum_probs=122.3

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc---HHHHHHHHHcC-CCccccCCCCCCCc
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL---YDVAKTLIELG-AKVDAYRPGRHGGT   78 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~---~~~v~~Ll~~g-a~~~~~~~d~~g~T   78 (487)
                      .|..|+||||+|+..|+.++|++||++|++++.+|..|+||||+|+.. |+   .++++.|++.+ ++++.+  |..|+|
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~--d~~g~t  203 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYPCLILE--DSMNRT  203 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEE--CTTCCC
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh-cccccHHHHHHHHHhhhccccCC--CCCCCC
Confidence            356777777777777777777777777777777777777777777777 66   56666666665 567766  777777


Q ss_pred             HHHHHHH----hCCHHHHHHHHHc--------------------CCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660           79 PLHHAAK----RGLERTVKLLLSY--------------------GANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI  134 (487)
Q Consensus        79 pLh~Aa~----~g~~~~v~~Ll~~--------------------ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  134 (487)
                      |||+|+.    .|+.+++++|++.                    |++++.+|..|+||||+|+.      +++|+++  +
T Consensus       204 pLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~  275 (327)
T 1sw6_A          204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M  275 (327)
T ss_dssp             HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T
T ss_pred             HHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C
Confidence            7777777    7777777777765                    67777777777777777764      6777776  4


Q ss_pred             ccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660          135 FSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL  186 (487)
Q Consensus       135 ~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  186 (487)
                      ++  .+|..|+|||| +|+..++.+++++|+++|++.+.++..+..+++.+.
T Consensus       276 ~n--~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          276 LN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             TT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             CC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            55  88999999999 899999999999999999999888877777766554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=1.5e-27  Score=203.90  Aligned_cols=134  Identities=19%  Similarity=0.294  Sum_probs=129.6

Q ss_pred             CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCC-
Q 040660           30 GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDD-  108 (487)
Q Consensus        30 g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~-  108 (487)
                      +++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+. |+.+++++|+++|++++.+|.. 
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~   77 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAAR-GQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT   77 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred             CCCccCCCCCCccHHHHHHHc-CCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence            578999999999999999999 9999999999999999998  8999999999999 9999999999999999999999 


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCC
Q 040660          109 CQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSR  170 (487)
Q Consensus       109 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~  170 (487)
                      |+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|...++.+++++|+++|++
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVD-LAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHH-HHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999  99999999999 89999999999999998875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=2.6e-28  Score=220.38  Aligned_cols=156  Identities=15%  Similarity=0.091  Sum_probs=141.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCCCcH----HHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            7 KEELLYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLY----DVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~g~~----~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      +.++|+.|++.|+.+.++.++..+.  +.++ ..|+||||+|+.. |+.    +++++||++|+++|.+  |..|+||||
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~-~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpLh   80 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRN-NNDEARYKISMFLINKGADIKSR--TKEGTTLFF   80 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTC-SCHHHHHHHHHHHHHTTCCSSCC--CTTCCCTHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHc-CCcchHHHHHHHHHHCCCCCCCC--CCCCCcHHH
Confidence            4578999999999999999998864  4556 7899999999999 764    5999999999999998  999999999


Q ss_pred             HHHHhCC------HHHHHHHHHcCCCcccccCCCC-CHHHHHHHcC-----CHHHHHHHHh-CCCcccccccccCCCCHH
Q 040660           82 HAAKRGL------ERTVKLLLSYGANALVLNDDCQ-TPLEVARAKG-----FTNVVRAIEN-HICIFSGWLRELYGPGFL  148 (487)
Q Consensus        82 ~Aa~~g~------~~~v~~Ll~~ga~~~~~d~~g~-TpL~~A~~~g-----~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L  148 (487)
                      +|+..|+      .+++++|+++|++++.+|..|+ ||||+|+..+     +.+++++|++ +|++++  .+|..|.|||
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~TpL  158 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTAL  158 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCHH
Confidence            9999997      6889999999999999999999 9999999954     4579999999 999999  9999999999


Q ss_pred             HHHhhhcCCHHHHHHhhcCCCC
Q 040660          149 ELLAPQLLSRKVWVAVLPTGSR  170 (487)
Q Consensus       149 ~~~a~~~~~~~~~~~Ll~~g~~  170 (487)
                      | +|...++.+++++|......
T Consensus       159 ~-~A~~~~~~~~v~~L~~~~~~  179 (186)
T 3t8k_A          159 E-FVKRCQKPIALKMMEDYIKK  179 (186)
T ss_dssp             H-HHHTTTCHHHHHHHHHHHHH
T ss_pred             H-HHHHcCCHHHHHHHHHHHHH
Confidence            9 99999999999999866543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=8.4e-27  Score=195.61  Aligned_cols=126  Identities=37%  Similarity=0.490  Sum_probs=122.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK   85 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~   85 (487)
                      +|+|+||+|++.|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.|++++.+  |..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCcHHHHHHH
Confidence            589999999999999999999999999999999999999999999 9999999999999999988  8999999999999


Q ss_pred             hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660           86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI  134 (487)
Q Consensus        86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  134 (487)
                      .|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999985

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=1.1e-27  Score=230.45  Aligned_cols=187  Identities=18%  Similarity=0.156  Sum_probs=173.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC-CccccCCCCCCCcHHHHH
Q 040660            7 KEELLYQQVNYGNVEGIKALCRDGAG--LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA-KVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga-~~~~~~~d~~g~TpLh~A   83 (487)
                      ..+++|.|+..|+.+.++.|++.+.+  +|.+|..|+||||+|+.. |+.+++++|++.|+ +++..  |..|.||||+|
T Consensus        76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~~g~tpL~~a  152 (276)
T 4hbd_A           76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH-ANFPVVQQLLDSGVCKVDKQ--NRAGYSPIMLT  152 (276)
T ss_dssp             HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTSCCCTTCC--CTTSCCHHHHG
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC-CCHHHHHHHHHCCCCcCCCC--CCCCCCHHHHH
Confidence            45677889999999999999988766  899999999999999999 99999999999998 99988  99999999999


Q ss_pred             H-----HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCH
Q 040660           84 A-----KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSR  158 (487)
Q Consensus        84 a-----~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~  158 (487)
                      +     ..++.+++++|++.|++++..|..|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+..++.
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh-~A~~~g~~  229 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALM-CACEHGHK  229 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCH
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHCCCH
Confidence            9     6789999999999999999999999999999999999999999999999999  99999999999 89999999


Q ss_pred             HHHHHhhc-CCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660          159 KVWVAVLP-TGSRNPTKPFKLELAIYPSLLDARPRMVIALWK  199 (487)
Q Consensus       159 ~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  199 (487)
                      +++++|+. .|++.+.++..+..++..+...+....+..|..
T Consensus       230 ~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~  271 (276)
T 4hbd_A          230 EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS  271 (276)
T ss_dssp             HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999 899999999888889888888777777776653

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.94  E-value=2e-26  Score=202.72  Aligned_cols=128  Identities=28%  Similarity=0.285  Sum_probs=122.4

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|+||||+|+. |+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        34 ~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~  109 (162)
T 1ihb_A           34 QNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIE--DNEGNLPLHL  109 (162)
T ss_dssp             CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHH
Confidence            46789999999999 999999999999999999999999999999999 9999999999999999998  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCC-cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660           83 AAKRGLERTVKLLLSYGAN-ALVLNDDCQTPLEVARAKGFTNVVRAIENHICI  134 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  134 (487)
                      |+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       110 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999998 699999999999999999999999999999985

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=5.1e-26  Score=201.92  Aligned_cols=127  Identities=27%  Similarity=0.357  Sum_probs=122.9

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~  119 (169)
T 2y1l_E           43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF-GHLEIVEVLLKNGADVNAN--DMEGHTPLHL  119 (169)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence            467899999999999999999999999999999999999999999999 9999999999999999998  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI  132 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  132 (487)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus       120 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999876

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=3.3e-26  Score=207.43  Aligned_cols=161  Identities=22%  Similarity=0.204  Sum_probs=150.4

Q ss_pred             CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCC
Q 040660           32 GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT  111 (487)
Q Consensus        32 ~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~T  111 (487)
                      .+|.+|..|.||||+|+.. |+.+++++|++.|++++.+  |..|.||||+|+..|+.+++++|++.|++++.+|..|+|
T Consensus        27 ~~n~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t  103 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACML-GMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT  103 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHH-TCGGGHHHHHHHHCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred             HHhCcCCCCCCHHHHHHHc-CCHHHHHHHHHhccccccc--cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence            3577899999999999999 9999999999999999988  899999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccch
Q 040660          112 PLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARP  191 (487)
Q Consensus       112 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~  191 (487)
                      |||+|+..|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+.++..+..++..+...+..
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  180 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ  180 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH
Confidence            9999999999999999999999999  99999999999 89999999999999999999998888888888887777777


Q ss_pred             HHHHHHH
Q 040660          192 RMVIALW  198 (487)
Q Consensus       192 ~~~~~l~  198 (487)
                      ..+..|.
T Consensus       181 ~~v~~Ll  187 (192)
T 2rfm_A          181 EVIKIFT  187 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766554

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=2.3e-26  Score=206.14  Aligned_cols=136  Identities=21%  Similarity=0.229  Sum_probs=130.2

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~  111 (179)
T 3f6q_A           35 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAV--NEHGNVPLHY  111 (179)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHH
Confidence            467899999999999999999999999999999999999999999999 9999999999999999998  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccC
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELY  143 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~  143 (487)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++  ..+..
T Consensus       112 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~--~~~~~  170 (179)
T 3f6q_A          112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN--RIPYK  170 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS--CBCCC
T ss_pred             HHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc--cCCcc
Confidence            999999999999999999999999999999999999999999999999999988  44433

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.93  E-value=3.9e-26  Score=201.64  Aligned_cols=127  Identities=32%  Similarity=0.450  Sum_probs=120.8

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~  114 (165)
T 3twr_A           38 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNVA--DLWKFTPLHE  114 (165)
T ss_dssp             TTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred             cccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc-CcHHHHHHHHhCCCCCCCc--CCCCCCHHHH
Confidence            456788999999999999999999999999999999999999999999 9999999999999999998  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC  133 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  133 (487)
                      |+..|+.+++++|+++|++++.+|.+|+||||+|+. |+.+++++|+++|+
T Consensus       115 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            999999999999999999999999999999999876 99999999999986

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=8.6e-26  Score=196.97  Aligned_cols=123  Identities=24%  Similarity=0.366  Sum_probs=119.8

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~  106 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAK--DMLKMTALHW  106 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence            467799999999999999999999999999999999999999999999 9999999999999999998  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI  128 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~L  128 (487)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       107 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999999999999999999999999999999999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=2.2e-26  Score=215.04  Aligned_cols=191  Identities=13%  Similarity=0.014  Sum_probs=150.1

Q ss_pred             HHHHHHcCCCCCccC---CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 040660           23 IKALCRDGAGLEWID---KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG   99 (487)
Q Consensus        23 v~~Ll~~g~~~~~~d---~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g   99 (487)
                      |+.||++|++++..+   ..|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.+++++|++.|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALT-GELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHH-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHc-CCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            578899998876554   4677899999999 9999999999999999998  999999999999999999999999999


Q ss_pred             CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc-cCCCCHHHHHh--hhcCCHHHHHHhhcCCCCCCCCCC
Q 040660          100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE-LYGPGFLELLA--PQLLSRKVWVAVLPTGSRNPTKPF  176 (487)
Q Consensus       100 a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~G~t~L~~~a--~~~~~~~~~~~Ll~~g~~~~~~~~  176 (487)
                      ++++.+|..|+||||+|+..|+.++|++|+++|++++  .++ ..|.|||| +|  ...++.+++++|++.|++.+..+.
T Consensus        78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~-~A~a~~~~~~~~v~~Ll~~ga~~~~~~~  154 (229)
T 2vge_A           78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATAFE-KCDPYREGYADCATYLADVEQSMGLMNS  154 (229)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCSSTTCCTGG-GCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHhcChHHHHHHHHHcCCCcccccC
Confidence            9999999999999999999999999999999999998  776 69999999 88  899999999999999999988876


Q ss_pred             ccchhccccccccchHHHHHHHhcc--cCCCCCCCCCCceeeecCC
Q 040660          177 KLELAIYPSLLDARPRMVIALWKAN--LEEPKFQHSDPSVTIVDNS  220 (487)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~i~~~~  220 (487)
                      .+..+++........+.++ .....  +...+..+.+++.......
T Consensus       155 ~~~~~l~~~~~~~~~~~ll-~~ga~~~~~~~d~~G~TpL~~A~~~g  199 (229)
T 2vge_A          155 GAVYALWDYSAEFGDELSF-REGESVTVLRRDGPEETDWWWAALHG  199 (229)
T ss_dssp             GEEEESSCBCCSSTTBCCB-CTTCEEEEEESSCTTCSSEEEEEETT
T ss_pred             CchHHHHHHhhccccccCc-cccccccccccCCCcccHHHHHHHcC
Confidence            6655555433222211111 11222  4445566777777666444

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=2.4e-26  Score=216.14  Aligned_cols=148  Identities=20%  Similarity=0.205  Sum_probs=133.7

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      +..|.|+||+|+..|+.++|++||+.|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~tpL~~A  110 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCA  110 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence            45689999999999999999999999999999999999999999999 9999999999999999998  99999999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCC-CHHHHH--HHcCCHHHHHHHHhCCCccccccc---------ccCCCCHHHHH
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQ-TPLEVA--RAKGFTNVVRAIENHICIFSGWLR---------ELYGPGFLELL  151 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpL~~A--~~~g~~~~v~~Ll~~ga~~~~~~~---------d~~G~t~L~~~  151 (487)
                      +..|+.+++++|+++|++++.+|..|. ||||+|  +..|+.+++++|+++|++++  ..         +..+.++++ +
T Consensus       111 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~--~~~~~~~~al~d~~~~~~~e-L  187 (239)
T 1ycs_B          111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGVIYALWDYEPQNDDE-L  187 (239)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT--TTGGGEEEESSCBCCSSTTB-C
T ss_pred             HHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc--ccccceEEEEeccCCCCCCc-c
Confidence            999999999999999999999998887 999999  88999999999999999877  44         556777777 5


Q ss_pred             hhhcCC
Q 040660          152 APQLLS  157 (487)
Q Consensus       152 a~~~~~  157 (487)
                      +...+.
T Consensus       188 a~~~G~  193 (239)
T 1ycs_B          188 PMKEGD  193 (239)
T ss_dssp             CBCSSC
T ss_pred             cccCCC
Confidence            544443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=5.6e-26  Score=194.28  Aligned_cols=132  Identities=20%  Similarity=0.248  Sum_probs=89.7

Q ss_pred             CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCC
Q 040660           30 GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDC  109 (487)
Q Consensus        30 g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g  109 (487)
                      |+|+ .+|..|.||||+|+.. |+.+++++|++.|++++.+  |..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g   76 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIK-GDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN   76 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred             CCCC-CcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence            4555 5667777777777777 7777777777777777766  6677777777777777777777777777777777777


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660          110 QTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG  168 (487)
Q Consensus       110 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g  168 (487)
                      +||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|...+..+++.+|...+
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           77 DSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVD-YTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GCCCHHHHHHHSCC----
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhhccHHHHHhhccccc
Confidence            777777777777777777777777776  67777777777 666666666666555443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1.8e-26  Score=197.32  Aligned_cols=128  Identities=30%  Similarity=0.404  Sum_probs=119.6

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|.+|+|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~   82 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTT--GYQNDSPLHD   82 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CGGGCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCcccCc--CCCCCCHHHH
Confidence            478899999999999999999999999999999999999999999999 9999999999999999998  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC  133 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga  133 (487)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|.+.+.
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999999999999999999999999999999988877654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.93  E-value=2.7e-25  Score=194.18  Aligned_cols=124  Identities=27%  Similarity=0.397  Sum_probs=120.3

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        32 ~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~  107 (156)
T 1bd8_A           32 LNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVP--DGTGALPIHL  107 (156)
T ss_dssp             CCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred             cCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCcHHHH
Confidence            46789999999 999999999999999999999999999999999999 9999999999999999998  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhC
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH  131 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~  131 (487)
                      |+..|+.+++++|++. ++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus       108 A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          108 AVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999 99999999999999999999999999999975

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=5.5e-25  Score=194.60  Aligned_cols=154  Identities=19%  Similarity=0.133  Sum_probs=144.5

Q ss_pred             CCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH
Q 040660           39 EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA  118 (487)
Q Consensus        39 ~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~  118 (487)
                      .|.||||+|+.. |+.+++++|++.|++++.+  |..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+.
T Consensus         2 ~~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   78 (167)
T 3v31_A            2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS   78 (167)
T ss_dssp             TTCCCHHHHHHT-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCcchHHHHHHC-CCHHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            588999999999 9999999999999999988  8999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          119 KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       119 ~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                      .|+.+++++|+++|++++  .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..++..+...+....+..|.
T Consensus        79 ~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~  155 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVDVN--EYDWNGGTPLL-YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE  155 (167)
T ss_dssp             HTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            999999999999999999  99999999999 899999999999999999999888888888888887777777766554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=1.4e-25  Score=188.11  Aligned_cols=113  Identities=27%  Similarity=0.350  Sum_probs=100.0

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      ++..|+|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|+||||+
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~tpL~~   79 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLS   79 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHH
Confidence            456788999999999999999999999999999999999999999999 9999999999999999987  8899999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA  118 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~  118 (487)
                      |+..|+.+++++|+++|++++.+|.+|+||||+|..
T Consensus        80 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           80 AVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            999999999999999999999999999999999843

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=3.6e-25  Score=189.10  Aligned_cols=127  Identities=21%  Similarity=0.229  Sum_probs=120.4

Q ss_pred             cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHH
Q 040660           36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV  115 (487)
Q Consensus        36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~  115 (487)
                      ....|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+
T Consensus        10 ~~~~~~t~l~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~   86 (136)
T 2jab_A           10 HGSDLGKKLLEAARA-GQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL   86 (136)
T ss_dssp             --CHHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             ccccccHHHHHHHHh-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence            345688999999999 9999999999999999998  8999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660          116 ARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG  168 (487)
Q Consensus       116 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g  168 (487)
                      |+..|+.+++++|+++|++++  .+|..|.|||| +|...++.+++++|++.|
T Consensus        87 A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           87 AAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFD-ISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHC-
T ss_pred             HHHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999  99999999999 899999999999999876

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=9.4e-26  Score=197.53  Aligned_cols=140  Identities=21%  Similarity=0.218  Sum_probs=120.9

Q ss_pred             CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCC-
Q 040660           33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT-  111 (487)
Q Consensus        33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~T-  111 (487)
                      .+..+..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|+ .|+.+++++|+++|++++.+|..|+| 
T Consensus         5 ~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~tt   80 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTR   80 (156)
T ss_dssp             -----CCSTTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCC
T ss_pred             ccCCCccchHHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            345678899999999999 9999999999999999998  899999999986 99999999999999999999999999 


Q ss_pred             HHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccc
Q 040660          112 PLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLE  179 (487)
Q Consensus       112 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~  179 (487)
                      |||+|+..|+.++|++|+++|++++  .+|..|.|||| +|...++.+++++|+++|++.+.++..+.
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  145 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRAAAGGTRGSNHARI  145 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSSCC-----------
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHhCHHHHHHHHHHcCCCCCccCcCcC
Confidence            9999999999999999999999999  99999999999 89999999999999999999877664433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=1.4e-25  Score=202.00  Aligned_cols=140  Identities=22%  Similarity=0.209  Sum_probs=129.5

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCC-CCCCcHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPG-RHGGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~TpLh~   82 (487)
                      +.+|+||||+|++.|+.++++.|++ |++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  | ..|+||||+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~--~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHR--DMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCCHHHH
Confidence            4578999999999999999999999 999999999999999999999 9999999999999999988  6 889999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.+++++|+++|++++.+|.+|+||||+|+..++                   ...+.++|+ +++..+..++++
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-------------------~~~~~~~l~-~a~~~~~~~i~~  176 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-------------------TTPKGNPMQ-FGRRIGLEKVIN  176 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH-------------------TCCCCSHHH-HHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc-------------------CcccccHHH-HHHHcCHHHHHH
Confidence            999999999999999999999999999999999987432                   234679999 899999999999


Q ss_pred             HhhcC
Q 040660          163 AVLPT  167 (487)
Q Consensus       163 ~Ll~~  167 (487)
                      +|.++
T Consensus       177 ~L~~~  181 (183)
T 3deo_A          177 VLEGQ  181 (183)
T ss_dssp             HHHTC
T ss_pred             HHHHh
Confidence            99764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=5.8e-26  Score=210.85  Aligned_cols=135  Identities=23%  Similarity=0.341  Sum_probs=110.3

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHc-CCCccccCCCCCCCcHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-GAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpLh~   82 (487)
                      +.+|.|+||+|+..|+.++|++|++.|++++.+|..|.||||+|+.. |+.+++++|++. |++++.+  |..|.||||+
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~g~~~~~~--d~~g~tpL~~  146 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GHKDIVEMLFTQPNIELNQQ--NKLGDTALHA  146 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHTTSTTCCCCCC--CTTSCCHHHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHcCCCCCcccc--CCCCCCHHHH
Confidence            45678999999999999999999999999999999999999999999 999999999998 8999987  8899999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccC
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELY  143 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~  143 (487)
                      |+..|+.+++++|+++|++++.+|.+|+||||+|+..++.++++.|+++++...  ..+..
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~--~~~~~  205 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT--LSNAE  205 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh--ccchh
Confidence            999999999999999999999999999999999999999999999999988876  55543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.92  E-value=9.7e-25  Score=182.92  Aligned_cols=126  Identities=35%  Similarity=0.450  Sum_probs=122.3

Q ss_pred             CCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH
Q 040660           39 EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA  118 (487)
Q Consensus        39 ~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~  118 (487)
                      +|+||||+|+.. |+.+++++|+++|++++..  |..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus         1 ~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            589999999999 9999999999999999988  8999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCC
Q 040660          119 KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSR  170 (487)
Q Consensus       119 ~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~  170 (487)
                      .|+.+++++|+++|++++  .+|..|.|||+ +|...++.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHTCC
T ss_pred             cChHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999  99999999999 89999999999999999875

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=2.6e-26  Score=207.24  Aligned_cols=129  Identities=21%  Similarity=0.205  Sum_probs=119.5

Q ss_pred             CCchHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc------HHHHHHHHHcCCCccccCCCC
Q 040660            5 QSKEELLYQQVNYGNV----EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL------YDVAKTLIELGAKVDAYRPGR   74 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~------~~~v~~Ll~~ga~~~~~~~d~   74 (487)
                      ..|+||||+|+..|+.    +++++||++|+++|.+|..|+||||+|+.. ++      .+++++||++|+++|.+  |.
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~~~~~~~~~~iv~~Ll~~Gadin~~--d~  112 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-GGNDITGTTELCKIFLEKGADITAL--YK  112 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSSSC--BG
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCcchhhHHHHHHHHHHCCCCCCcc--CC
Confidence            5699999999999985    599999999999999999999999999998 65      68999999999999998  99


Q ss_pred             CCC-cHHHHHHHhC-----CHHHHHHHHH-cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660           75 HGG-TPLHHAAKRG-----LERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS  136 (487)
Q Consensus        75 ~g~-TpLh~Aa~~g-----~~~~v~~Ll~-~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~  136 (487)
                      .|. ||||+|+..+     +.+++++|++ +|+|++.+|..|+||||+|+..|+.++|++|+++..+.+
T Consensus       113 ~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~  181 (186)
T 3t8k_A          113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN  181 (186)
T ss_dssp             GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred             CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999 9999999944     4679999999 999999999999999999999999999999998876665

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.92  E-value=1.7e-25  Score=220.46  Aligned_cols=194  Identities=14%  Similarity=-0.018  Sum_probs=154.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC
Q 040660            9 ELLYQQVNYGNVEGIKALCRDGAGLEW-IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG   87 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g   87 (487)
                      +.+|+|+..+..+++++|++.|+++|. +|..|+||||+|+.. |+.++|++||++|++++.+  |..|+||||+|+..|
T Consensus        99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g  175 (327)
T 1sw6_A           99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSV  175 (327)
T ss_dssp             -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSS
T ss_pred             chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhc
Confidence            345788888889999999999999999 899999999999999 9999999999999999998  999999999999999


Q ss_pred             C---HHHHHHHHHcC-CCcccccCCCCCHHHHHHH----cCCHHHHHHHHhC--------------------CCcccccc
Q 040660           88 L---ERTVKLLLSYG-ANALVLNDDCQTPLEVARA----KGFTNVVRAIENH--------------------ICIFSGWL  139 (487)
Q Consensus        88 ~---~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~~  139 (487)
                      +   .++++.|++.+ ++++.+|..|+||||+|+.    .|+.+++++|++.                    |++++  .
T Consensus       176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~--~  253 (327)
T 1sw6_A          176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN--D  253 (327)
T ss_dssp             HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred             ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc--c
Confidence            8   78888899887 7899999999999999999    9999999999988                    78888  8


Q ss_pred             cccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh--cccCCCCCCCCCCceee
Q 040660          140 RELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK--ANLEEPKFQHSDPSVTI  216 (487)
Q Consensus       140 ~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~i  216 (487)
                      ++..|.|||| .|..      +++|+.+  +.+.++..+..+++.+...+....+..|..  +.++..+..+.+|+.+.
T Consensus       254 ~~~~g~t~L~-~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  323 (327)
T 1sw6_A          254 KNGERKDSIL-ENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  323 (327)
T ss_dssp             ------CHHH-HHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             ccccCCChhH-HHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            9999999999 5553      7888887  466677788888888888888888877764  44555556666666543

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=4.7e-25  Score=207.99  Aligned_cols=143  Identities=22%  Similarity=0.225  Sum_probs=132.0

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCC-CCCCcHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPG-RHGGTPLHH   82 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~TpLh~   82 (487)
                      +.+|.||||+|++.|+.++|+.||+ |+++|.+|..|.||||+|+.. |+.+++++|+++|++++.+  | ..|.||||+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~~g~t~L~~  117 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHR--DMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CSSSCCCHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCcC--CCCCCCCHHHH
Confidence            3478999999999999999999999 999999999999999999999 9999999999999999988  6 889999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.++|++|+++|++++.+|..|+||||+|+..                   .....+.|||+ +|+..++.++++
T Consensus       118 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-------------------~~~~~~~~~l~-~a~~~g~~~iv~  177 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-------------------LKTTPKGNPMQ-FGRRIGLEKVIN  177 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-------------------HTTCCCSSHHH-HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-------------------HhccCCCCHHH-HHHHcChHHHHH
Confidence            9999999999999999999999999999999999852                   23356789999 899999999999


Q ss_pred             HhhcCCCC
Q 040660          163 AVLPTGSR  170 (487)
Q Consensus       163 ~Ll~~g~~  170 (487)
                      +|+..+.+
T Consensus       178 ~L~~~~~~  185 (244)
T 3ui2_A          178 VLEGQVFE  185 (244)
T ss_dssp             HHHHHHEE
T ss_pred             HHHHhccc
Confidence            99976544

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=211.72  Aligned_cols=140  Identities=19%  Similarity=0.158  Sum_probs=125.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCChHHHHHHhCC--CcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660            7 KEELLYQQVNYGNVEGIKALCRDGAGLEW------IDKEGKTPLIAACMNP--GLYDVAKTLIELGAKVDAYRPGRHGGT   78 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~------~d~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~~~~~~d~~g~T   78 (487)
                      ..++|+.|+..|+.+.|+.|++.|++++.      .|..|.||||+|+..+  |+.+++++||++|+++|.+  |..|.|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~--d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--AADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC--CTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC--CCCCCC
Confidence            45889999999999999999999999998      6899999999999852  7899999999999999998  899999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCC
Q 040660           79 PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLS  157 (487)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~  157 (487)
                      |||+|+..|+.++|++||++|++++.+|.+|+||||+|+..|+.+++++|+++|++        .|.|||| +|+..++
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh-~A~~~g~  298 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLH-VDYSWVI  298 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhH-HHHhcCC
Confidence            99999999999999999999999999999999999999999999999999998875        4789999 6766554

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.90  E-value=5.6e-24  Score=178.28  Aligned_cols=111  Identities=23%  Similarity=0.220  Sum_probs=105.0

Q ss_pred             CCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHH
Q 040660           37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA  116 (487)
Q Consensus        37 d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A  116 (487)
                      +..|.||||+|+.. |+.+++++|++.|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus         4 ~~~~~~~l~~A~~~-~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHc-CCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            56789999999999 9999999999999999998  89999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhh
Q 040660          117 RAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAP  153 (487)
Q Consensus       117 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~  153 (487)
                      +..|+.++|++|+++|++++  .+|..|.|||| +|.
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~  114 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKT--VKGPDGLTAFE-ATD  114 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HCC
T ss_pred             HHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HhC
Confidence            99999999999999999999  99999999999 663

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=1e-23  Score=210.06  Aligned_cols=144  Identities=21%  Similarity=0.302  Sum_probs=120.7

Q ss_pred             CchHHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            6 SKEELLYQQVNY-GNVEGIKALCRDGAGLEWID--KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         6 ~g~t~L~~Aa~~-g~~~~v~~Ll~~g~~~~~~d--~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .+.|+||+|+.. |+.++|++||++|+++|..+  ..|.||||+|+.. |+.+++++||++|+++|.+  |..|.||||+
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~Gadvn~~--d~~G~TpLh~  274 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA-NSLLACEFLLQNGANVNQA--DSAGRGPLHH  274 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence            456899999999 99999999999999999998  8999999999999 9999999999999999998  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc-ccccccCCCCHHHHHhh
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS-GWLRELYGPGFLELLAP  153 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~d~~G~t~L~~~a~  153 (487)
                      |+..|+.+++++||++|++++.+|.+|+||||+|+..|+.++|++|+..+.... ....+..+.|+|+ ++.
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~-i~~  345 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD-IFR  345 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred             HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH-HHH
Confidence            999999999999999999999999999999999999999999999998874422 1145567788888 443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=8.9e-26  Score=225.65  Aligned_cols=157  Identities=15%  Similarity=0.069  Sum_probs=134.2

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCc---cccCCCCCCC
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGL---EWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV---DAYRPGRHGG   77 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~---~~~~~d~~g~   77 (487)
                      +.+++||||+|++.|+.++|++|+++|+..   +..+..|.||||+|+.. |+.++|++|+++|+++   +..  +.+ .
T Consensus        89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~--~~~-~  164 (376)
T 2aja_A           89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQ--AEN-Y  164 (376)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHS--HHH-H
T ss_pred             CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc-CCHHHHHHHHhCCCCccccccC--CCC-C
Confidence            345789999999999999999999998732   24456788999999999 9999999999999862   332  222 9


Q ss_pred             cHHHHHHHhCCHHHHHHHHHcCCCccc--ccCCCCCHHHHHH-HcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh
Q 040660           78 TPLHHAAKRGLERTVKLLLSYGANALV--LNDDCQTPLEVAR-AKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ  154 (487)
Q Consensus        78 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~--~d~~g~TpL~~A~-~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~  154 (487)
                      ||||+|+..|+.++|++|+++|++++.  .|..|+||||+|+ .+|+.++|++|+++|++         |.|||| .|+.
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---------~~taL~-~Aa~  234 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---------LAYAEI-HEFE  234 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---------HHHHHH-CTTT
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---------cchHHH-HHHH
Confidence            999999999999999999999999988  8999999999999 99999999999998743         679999 9999


Q ss_pred             cCCHHHHHHhhcCCCCCCCC
Q 040660          155 LLSRKVWVAVLPTGSRNPTK  174 (487)
Q Consensus       155 ~~~~~~~~~Ll~~g~~~~~~  174 (487)
                      .++.+++++|+++|++.+..
T Consensus       235 ~g~~evv~lL~~~ga~~~~~  254 (376)
T 2aja_A          235 YGEKYVNPFIARHVNRLKEM  254 (376)
T ss_dssp             TTTTTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhcCcccccc
Confidence            99999999999998876443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=4.3e-24  Score=198.20  Aligned_cols=134  Identities=17%  Similarity=0.167  Sum_probs=117.0

Q ss_pred             cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCcccccCCCCCHHH
Q 040660           36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSY-GANALVLNDDCQTPLE  114 (487)
Q Consensus        36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpL~  114 (487)
                      .+..|.||||+|+.. |+.+++++|++.|++++.+  |..|.||||+|+..|+.++|++|++. |++++.+|..|+||||
T Consensus        69 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           69 QAESIDNPLHEAAKR-GNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HEEEESCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             ccccccccccccccc-CcHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            456789999999999 9999999999999999988  89999999999999999999999999 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCC
Q 040660          115 VARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKP  175 (487)
Q Consensus       115 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~  175 (487)
                      +|+..|+.++|++|+++|++++  .+|..|.|||| +|...+..++++.|+..|+.....+
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFD-MATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHH-HCCSHHHHHHHC-------------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHH-HhcchhHHHHHHHHhccchhhhccc
Confidence            9999999999999999999999  99999999999 8999999999999999999875443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.89  E-value=1.4e-22  Score=194.85  Aligned_cols=125  Identities=20%  Similarity=0.226  Sum_probs=89.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCC------CccCCCCChHHHHHHhCC--CcHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660            8 EELLYQQVNYGNVEGIKALCRDGAGL------EWIDKEGKTPLIAACMNP--GLYDVAKTLIELGAKVDAYRPGRHGGTP   79 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~------~~~d~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   79 (487)
                      .++|+.|+..|+.+.++.+++.|+++      +..|..|.||||+|+..+  |+.+++++|+++|+++|.+  |..|.||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~--d~~g~Tp  208 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc--CCCCCCH
Confidence            35677777777777777777777763      333666777777777763  4667777777777777766  6777777


Q ss_pred             HHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660           80 LHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI  134 (487)
Q Consensus        80 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  134 (487)
                      ||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..|+.++|++|+++|++
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  263 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  263 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7777777777777777777777777777777777777777777777777777664

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=5.3e-25  Score=198.12  Aligned_cols=137  Identities=24%  Similarity=0.193  Sum_probs=118.4

Q ss_pred             HHHcCCHHHHHHHHHcCCC--CC---------ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660           14 QVNYGNVEGIKALCRDGAG--LE---------WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus        14 Aa~~g~~~~v~~Ll~~g~~--~~---------~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      |++.|..+.+++|++.+..  ..         ..+..|.||||+|+.. |+.+++++|++ |++++.+  |..|+||||+
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~   82 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLF   82 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHT-TCHHHHHHHTT-TSCTTCC--CTTSCCHHHH
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHc-CCHHHHHHHHh-cCCCCCc--CCCCCCHHHH
Confidence            3455566666666654322  11         1356899999999999 99999999999 9999998  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCC
Q 040660           83 AAKRGLERTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLS  157 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~  157 (487)
                      |+..|+.+++++|+++|++++.+| .+|+||||+|+..|+.+++++|+++|++++  .+|..|.|||| +|...++
T Consensus        83 A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~  155 (183)
T 3deo_A           83 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILK  155 (183)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHH-HHHHhcc
Confidence            999999999999999999999998 899999999999999999999999999999  99999999999 6655433

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=2.7e-22  Score=159.25  Aligned_cols=91  Identities=41%  Similarity=0.574  Sum_probs=59.4

Q ss_pred             CChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHc
Q 040660           40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAK  119 (487)
Q Consensus        40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~  119 (487)
                      |+||||+|+.. |+.+++++|++.|++++.+  |..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..
T Consensus         2 g~t~L~~A~~~-~~~~~v~~Ll~~g~~~n~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            2 GRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             -CCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            56666666666 6666666666666666665  66666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHhCCC
Q 040660          120 GFTNVVRAIENHIC  133 (487)
Q Consensus       120 g~~~~v~~Ll~~ga  133 (487)
                      |+.+++++|+++|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            66666666666665

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=3.7e-22  Score=158.44  Aligned_cols=93  Identities=42%  Similarity=0.552  Sum_probs=89.1

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK   85 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~   85 (487)
                      +|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHH
Confidence            589999999999999999999999999999999999999999999 9999999999999999998  9999999999999


Q ss_pred             hCCHHHHHHHHHcCCC
Q 040660           86 RGLERTVKLLLSYGAN  101 (487)
Q Consensus        86 ~g~~~~v~~Ll~~ga~  101 (487)
                      .|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999999975

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=2.6e-21  Score=185.93  Aligned_cols=167  Identities=13%  Similarity=-0.034  Sum_probs=141.9

Q ss_pred             CCCCCchHHHHHHHHcCCHHHHHHHHHcCC-----CCCc--------------------------cCCCCChHHHHHHhC
Q 040660            2 GLQQSKEELLYQQVNYGNVEGIKALCRDGA-----GLEW--------------------------IDKEGKTPLIAACMN   50 (487)
Q Consensus         2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-----~~~~--------------------------~d~~G~TpL~~A~~~   50 (487)
                      .+|.-+.+.|+++...|+..+.+++...-.     .++.                          .+....++|+.|+..
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~  140 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT  140 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence            478888999999999999776665542211     0000                          011134789999999


Q ss_pred             CCcHHHHHHHHHcCCCcccc----CCCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHH
Q 040660           51 PGLYDVAKTLIELGAKVDAY----RPGRHGGTPLHHAAKR---GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN  123 (487)
Q Consensus        51 ~g~~~~v~~Ll~~ga~~~~~----~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~  123 (487)
                       |+.+.++.|++.|++++..    ..|..|.||||+|+..   |+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus       141 -~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~  219 (278)
T 1dcq_A          141 -RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE  219 (278)
T ss_dssp             -TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             -cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHH
Confidence             9999999999999995522    2378899999999999   8999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCC
Q 040660          124 VVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNP  172 (487)
Q Consensus       124 ~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~  172 (487)
                      +|++|+++|++++  .+|..|.|||| +|...++.+++++|+++|++..
T Consensus       220 ~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          220 CLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHcCCCCC--CccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC
Confidence            9999999999999  99999999999 8999999999999999999753

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=2e-22  Score=166.57  Aligned_cols=107  Identities=35%  Similarity=0.471  Sum_probs=63.5

Q ss_pred             cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHH
Q 040660           36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV  115 (487)
Q Consensus        36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~  115 (487)
                      +|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus         5 ~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CSCSSCCHHHHHHHH-TCHHHHHHHTTTTCCSSCC--CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred             cCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            455566666666666 5666666666666665555  5556666666666666666666666666666666666666666


Q ss_pred             HHHcCCHHHHHHHHhCCCcccccccccCCCCH
Q 040660          116 ARAKGFTNVVRAIENHICIFSGWLRELYGPGF  147 (487)
Q Consensus       116 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~  147 (487)
                      |+..|+.+++++|+++|++++  .++..|.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGADVN--ARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSSSHH--HHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCCCCC--cCCcccccc
Confidence            666666666666666666655  555555554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=3.2e-22  Score=165.32  Aligned_cols=109  Identities=31%  Similarity=0.367  Sum_probs=103.1

Q ss_pred             CCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            2 GLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      -.|++|+|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNAR--SKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTCC--CTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCCHHH
Confidence            4688999999999999999999999999999999999999999999999 9999999999999999998  899999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCcccccCCCCCHH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPL  113 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL  113 (487)
                      +|+..|+.+++++|+++|++++.++..|.||-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999999873

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=7.3e-21  Score=184.85  Aligned_cols=127  Identities=13%  Similarity=0.029  Sum_probs=120.3

Q ss_pred             CChHHHHHHhCCCcHHHHHHHHHcCCCccc------cCCCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCcccccCCCC
Q 040660           40 GKTPLIAACMNPGLYDVAKTLIELGAKVDA------YRPGRHGGTPLHHAAKR---GLERTVKLLLSYGANALVLNDDCQ  110 (487)
Q Consensus        40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~------~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~d~~g~  110 (487)
                      +.++|+.|+.. |+.+.++.|++.|++++.      .  |..|.||||+|+..   |+.+++++|+++|++++.+|.+|+
T Consensus       151 ~~~~L~~A~~~-g~~~~v~~ll~~g~d~~~~~~~~~~--~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICN-RDLLSVLEAFANGQDFGQPLPGPDA--QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSCEECSSS--CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             hHHHHhhhhhc-cCHHHHHHHHhcCCcccccCCCccc--CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            34679999999 999999999999999987      4  88999999999997   899999999999999999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCC
Q 040660          111 TPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNP  172 (487)
Q Consensus       111 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~  172 (487)
                      ||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|...++.+++++|+.+|++..
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~~~~~iv~~Ll~~ga~~g  286 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAGTF  286 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhcCCCC
Confidence            99999999999999999999999999  99999999999 8999999999999999998754

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=2.7e-21  Score=182.14  Aligned_cols=134  Identities=24%  Similarity=0.173  Sum_probs=114.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCH
Q 040660           10 LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLE   89 (487)
Q Consensus        10 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~   89 (487)
                      ++++++..|+.+.+..+...+.+   .+..|.||||+|+.. |+.+++++|++ |++++.+  |..|.||||+|+..|+.
T Consensus        18 ~~l~~~~~g~~~~~~~~~~~~~~---~~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~g~~   90 (244)
T 3ui2_A           18 EYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSD   90 (244)
T ss_dssp             EEEEEESSCCCCEEEEGGGSCHH---HHHHHHHHHHHHHTT-TCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHHHTCH
T ss_pred             HHHHHHHcCCCcccccccccccc---cccCCCCHHHHHHHc-CCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHHCCCH
Confidence            33334444444444333333222   346799999999999 99999999999 9999998  89999999999999999


Q ss_pred             HHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhh
Q 040660           90 RTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAP  153 (487)
Q Consensus        90 ~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~  153 (487)
                      ++|++|+++|++++.+| ..|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|.
T Consensus        91 ~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~-~A~  152 (244)
T 3ui2_A           91 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAR  152 (244)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHH
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHH-HHH
Confidence            99999999999999998 889999999999999999999999999999  99999999999 554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.84  E-value=5.5e-21  Score=190.28  Aligned_cols=132  Identities=20%  Similarity=0.160  Sum_probs=121.3

Q ss_pred             cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHH
Q 040660           36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV  115 (487)
Q Consensus        36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~  115 (487)
                      .+..+.|+||+|+...|+++++++||++|++++..+.+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~  274 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH  274 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            34456789999998768999999999999999998333899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCC
Q 040660          116 ARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSR  170 (487)
Q Consensus       116 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~  170 (487)
                      |+..|+.++|++|+++|++++  .+|..|.|||| +|...++.+++++|+..+..
T Consensus       275 A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~-~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          275 ATILGHTGLACLFLKRGADLG--ARDSEGRDPLT-IAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence            999999999999999999999  99999999999 99999999999999987754

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.84  E-value=5.2e-22  Score=198.35  Aligned_cols=171  Identities=12%  Similarity=0.005  Sum_probs=136.7

Q ss_pred             hHHHHHHHH-cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCcccc-CCCCCCCcHHHHHHH
Q 040660            8 EELLYQQVN-YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY-RPGRHGGTPLHHAAK   85 (487)
Q Consensus         8 ~t~L~~Aa~-~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~-~~d~~g~TpLh~Aa~   85 (487)
                      .+.|++|.. .++.+++++|+++|.+.       .||||+|+.. |+.+++++|++.|+..... ..+..|.||||+|+.
T Consensus        66 ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~-G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           66 LLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAIT-GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHH-CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHc-CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence            457788776 57889999999887654       4999999999 9999999999999832111 115568899999999


Q ss_pred             hCCHHHHHHHHHcCCC---cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccc--cccCCCCHHHHHhh-hcCCHH
Q 040660           86 RGLERTVKLLLSYGAN---ALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWL--RELYGPGFLELLAP-QLLSRK  159 (487)
Q Consensus        86 ~g~~~~v~~Ll~~ga~---~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~--~d~~G~t~L~~~a~-~~~~~~  159 (487)
                      .|+.++|++|+++|++   .+..+.+ +||||+|+..|+.++|++|+++|++++  .  .|..|.|||| +|+ ..++.+
T Consensus       138 ~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~--~~~~d~~g~TpL~-~Aa~~~G~~e  213 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFR-WAAVGRGHHN  213 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHH-HHHSTTCCHH
T ss_pred             cCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc--hhccCCCCCCHHH-HHHHHCCCHH
Confidence            9999999999999986   2333333 999999999999999999999999987  6  8889999999 888 999999


Q ss_pred             HHHHhhcCCCCCCCCCCccchhccccccccchHHHHHH
Q 040660          160 VWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIAL  197 (487)
Q Consensus       160 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  197 (487)
                      ++++|++.|+.       +..++..+...+....+..|
T Consensus       214 iv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL  244 (376)
T 2aja_A          214 VINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFI  244 (376)
T ss_dssp             HHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHH
T ss_pred             HHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHH
Confidence            99999998753       45556666555555555444

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.79  E-value=4.9e-19  Score=145.08  Aligned_cols=91  Identities=29%  Similarity=0.414  Sum_probs=61.3

Q ss_pred             ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHH
Q 040660           35 WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLE  114 (487)
Q Consensus        35 ~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~  114 (487)
                      ..|.+|.|+||+|+.. |+.+++++|++.|++++.+  |..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus        19 ~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~i~~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARA-GQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             ---CCHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccCCccchHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            3456666777777766 6667777777777666665  666777777777777777777777777777667777777777


Q ss_pred             HHHHcCCHHHHHHH
Q 040660          115 VARAKGFTNVVRAI  128 (487)
Q Consensus       115 ~A~~~g~~~~v~~L  128 (487)
                      +|+..|+.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            77777777776665

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=4.4e-19  Score=145.35  Aligned_cols=90  Identities=30%  Similarity=0.434  Sum_probs=81.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|.+|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~tpl~~   96 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQ--DKFGKTAFDI   96 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccCCCcHHHH
Confidence            578899999999999999999999999999999999999999999999 9999999999999999987  8899999999


Q ss_pred             HHHhCCHHHHHHH
Q 040660           83 AAKRGLERTVKLL   95 (487)
Q Consensus        83 Aa~~g~~~~v~~L   95 (487)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999886

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.48  E-value=1.2e-14  Score=105.79  Aligned_cols=55  Identities=36%  Similarity=0.848  Sum_probs=50.5

Q ss_pred             cccccccccccCCceEEc--CCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          432 ATSSCVICLDAPVEGACV--PCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      +..+|+||++.+.+++++  ||||.++|..|+.+|+.....||+||++|.+++++|.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   63 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF   63 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence            446899999999999988  9999966999999999877789999999999999995

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.47  E-value=1.6e-14  Score=104.68  Aligned_cols=55  Identities=27%  Similarity=0.782  Sum_probs=49.9

Q ss_pred             cccccccccccCCceEEc--CCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          432 ATSSCVICLDAPVEGACV--PCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      ...+|.||++.+.+++++  ||||.++|..|+.+++.....||+||++|..++++|.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence            346899999999999887  9999966999999999777789999999999999996

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=7.3e-14  Score=102.72  Aligned_cols=53  Identities=26%  Similarity=0.743  Sum_probs=47.0

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      .++...|.||++.+.+++++||||..+|..|+..+.    .||+||++|..+++||.
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG   64 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence            344578999999999999999999955999999764    59999999999999984

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.25  E-value=1.5e-12  Score=98.83  Aligned_cols=51  Identities=31%  Similarity=0.922  Sum_probs=46.3

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      +...|.||++.+.+++++||||.++|..|+..++    .||+||++|..++++|.
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~   67 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYL   67 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBC
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEe
Confidence            3468999999999999999999955999999886    59999999999999985

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=92.24  Aligned_cols=49  Identities=29%  Similarity=0.695  Sum_probs=44.2

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      .+...|.||++.+.+++.++|||.| |..|+.+|......||+||+.|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence            3446899999999999999999999 999999998877899999999863

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.19  E-value=4.5e-12  Score=95.10  Aligned_cols=52  Identities=31%  Similarity=0.782  Sum_probs=46.3

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      .+...|.||++.+.+++++||||..+|..|+.+|.    .||+||++|.+++++|.
T Consensus        22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~   73 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKILM   73 (74)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS----BCTTTCCBCSEEEECBC
T ss_pred             ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc----cCCCcCcCccCcEEEee
Confidence            34578999999999999999999933999999984    69999999999999984

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=4.4e-12  Score=95.49  Aligned_cols=50  Identities=32%  Similarity=0.852  Sum_probs=45.3

Q ss_pred             cccccccccccCCceEEcCCCCc-cchHhhHHHHhccCCccccccccccceeEeee
Q 040660          432 ATSSCVICLDAPVEGACVPCGHM-AGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~-~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      +...|+||++.+.+++++||||. | |..|+.++.    .||+||++|...+++|.
T Consensus        24 ~~~~C~IC~~~~~~~~~~pCgH~~~-C~~C~~~~~----~CP~Cr~~i~~~~~i~~   74 (75)
T 2ecg_A           24 EEKLCKICMDRNIAIVFVPCGHLVT-CKQCAEAVD----KCPMCYTVITFKQKIFM   74 (75)
T ss_dssp             HHHSCSSSCSSCCCBCCSSSCCCCB-CHHHHHHCS----BCTTTCCBCCCCCBCCC
T ss_pred             CCCCCCcCCCCCCCEEEecCCCHHH-HHHHhhCCC----CCccCCceecCcEEEec
Confidence            45689999999999999999999 6 999998764    59999999999999984

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=2.7e-11  Score=92.73  Aligned_cols=51  Identities=24%  Similarity=0.457  Sum_probs=45.4

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccce
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV  481 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  481 (487)
                      .+....|.||++.+.+++.++|||.| |..|+.+|......||+||+.+...
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~   62 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI   62 (81)
T ss_dssp             CCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred             CCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCcccccc
Confidence            34557899999999999999999999 9999999988778999999998643

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.4e-11  Score=91.54  Aligned_cols=54  Identities=24%  Similarity=0.747  Sum_probs=47.2

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      .+...|.||++.+.+ +.+||||.| |..|+.+|......||+||+.+.....+|.
T Consensus        13 ~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   66 (70)
T 2ecn_A           13 TDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESSG   66 (70)
T ss_dssp             CCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred             CCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence            445789999999999 889999999 999999998878899999999987766653

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=3.4e-11  Score=89.87  Aligned_cols=51  Identities=24%  Similarity=0.482  Sum_probs=45.2

Q ss_pred             CCcccccccccccCCceEEc-CCCCccchHhhHHHHhccCCccccccccccce
Q 040660          430 KDATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANISQV  481 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~  481 (487)
                      .++...|.||++.+.+++.+ +|||.| |..|+.+|......||+||+.+...
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A           12 LTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             cCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence            45567999999999999887 999999 9999999987777899999998754

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.12  E-value=1.3e-11  Score=91.91  Aligned_cols=54  Identities=35%  Similarity=0.775  Sum_probs=46.7

Q ss_pred             CcccccccccccCCce-------EEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660          431 DATSSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY  485 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y  485 (487)
                      ++...|.||++...++       +.++|||.| |..|+.+|......||+||+.+.  .++++|
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence            3446899999988776       889999999 99999999888889999999997  566776

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=2.7e-11  Score=89.64  Aligned_cols=49  Identities=37%  Similarity=0.808  Sum_probs=43.0

Q ss_pred             CcccccccccccCCce-------EEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          431 DATSSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      .+...|.||++.+.++       +.++|||.| |..|+..|......||+||+.|..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence            4457899999988776       889999999 999999998877899999998864

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=1e-10  Score=87.49  Aligned_cols=50  Identities=26%  Similarity=0.789  Sum_probs=43.4

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhc---cCCccccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA---KKWGCPVCRANISQ  480 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~Cr~~i~~  480 (487)
                      ..+...|.||++.+.+++.++|||.| |..|+..|..   ....||+||+.+..
T Consensus        17 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             CccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            34557999999999999999999999 9999999986   34589999999863

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.09  E-value=3e-11  Score=87.94  Aligned_cols=52  Identities=35%  Similarity=0.777  Sum_probs=45.9

Q ss_pred             cccccccccCCce-------EEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEeee
Q 040660          434 SSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLYA  486 (487)
Q Consensus       434 ~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y~  486 (487)
                      ..|.||++...++       +.++|||.| |..|+.+|...+..||+||+.+.  .++++|.
T Consensus         4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l   64 (64)
T 2xeu_A            4 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIYI   64 (64)
T ss_dssp             CBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred             CCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence            5899999988765       788999999 99999999888889999999997  6788773

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.08  E-value=7.5e-11  Score=88.48  Aligned_cols=50  Identities=26%  Similarity=0.662  Sum_probs=43.6

Q ss_pred             CCCcccccccccccCCceEEcC-CCCccchHhhHHHHhccC--Ccccccccccc
Q 040660          429 DKDATSSCVICLDAPVEGACVP-CGHMAGCMSCLNEVKAKK--WGCPVCRANIS  479 (487)
Q Consensus       429 ~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~  479 (487)
                      +..+...|.||++.+.+++.++ |||.| |..|+.+|....  ..||+||+.+.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             cCCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            3455689999999999999999 99999 999999998754  58999999764

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.07  E-value=4.5e-11  Score=88.16  Aligned_cols=52  Identities=27%  Similarity=0.733  Sum_probs=45.7

Q ss_pred             ccccccccccCCce-EEcCCCCccchHhhHHHHhccCCccccccccccceeEee
Q 040660          433 TSSCVICLDAPVEG-ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY  485 (487)
Q Consensus       433 ~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y  485 (487)
                      ...|.||++...++ +.++|||.| |..|+.+|...+..||+||+.+..+++.+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred             CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence            35899999999885 789999999 99999999887789999999998776554

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1e-10  Score=85.60  Aligned_cols=49  Identities=22%  Similarity=0.529  Sum_probs=43.1

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhc-cCCccccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~  480 (487)
                      .+...|.||++...+++.++|||.| |..|+.+|.. ....||+||+.+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            4457999999999999999999999 9999999984 45589999999864

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.05  E-value=6e-11  Score=100.66  Aligned_cols=49  Identities=33%  Similarity=0.787  Sum_probs=44.6

Q ss_pred             ccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660          433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI  482 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~  482 (487)
                      ...|+||++.+.+++.+||||.| |..|+..|...+..||+||++|....
T Consensus        53 ~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~  101 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT  101 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred             cCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence            45799999999999999999999 99999999988889999999997543

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=8.7e-11  Score=88.42  Aligned_cols=49  Identities=24%  Similarity=0.636  Sum_probs=41.8

Q ss_pred             CcccccccccccCCce---EEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          431 DATSSCVICLDAPVEG---ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      .+...|.||++.+...   +.+||||.| |..|+.+|...+..||+||+.+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence            3456899999877655   778999999 999999998888899999998864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.04  E-value=1.5e-10  Score=85.57  Aligned_cols=51  Identities=27%  Similarity=0.675  Sum_probs=43.1

Q ss_pred             CcccccccccccC---CceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660          431 DATSSCVICLDAP---VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI  482 (487)
Q Consensus       431 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~  482 (487)
                      +....|.||++..   ..++.++|||.| |..|+..|......||+||..|...+
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcC
Confidence            4456899998866   456789999999 99999999888889999999987644

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.03  E-value=2.6e-10  Score=88.07  Aligned_cols=49  Identities=31%  Similarity=0.661  Sum_probs=43.5

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc------CCcccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK------KWGCPVCRANIS  479 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~  479 (487)
                      ..+...|.||++.+.+++.++|||.| |..|+..|...      ...||+||+.+.
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CCTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             CccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            34457899999999999999999999 99999998776      568999999986

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.03  E-value=1.3e-10  Score=88.28  Aligned_cols=50  Identities=24%  Similarity=0.543  Sum_probs=41.6

Q ss_pred             CCcccccccccccCCc---eEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          430 KDATSSCVICLDAPVE---GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      ..+...|.||++.+..   ...++|||.| |..|+.+|......||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence            3445789999887643   3567999999 999999999888899999999874

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-10  Score=87.39  Aligned_cols=54  Identities=24%  Similarity=0.522  Sum_probs=43.7

Q ss_pred             CCcccccccccccCCce---EEcCCCCccchHhhHHHHhccCCccccccccccceeEe
Q 040660          430 KDATSSCVICLDAPVEG---ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRL  484 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~  484 (487)
                      .+....|.||++.+...   +.++|||.| |..|+.+|......||+||++|..+.++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   68 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQL   68 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCccccccccc
Confidence            34456899999987543   445999999 9999999998888999999999876543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=2.9e-10  Score=88.46  Aligned_cols=49  Identities=29%  Similarity=0.680  Sum_probs=42.7

Q ss_pred             CCcccccccccccCCc----eEEcCCCCccchHhhHHHHhccC---Ccccccccccc
Q 040660          430 KDATSSCVICLDAPVE----GACVPCGHMAGCMSCLNEVKAKK---WGCPVCRANIS  479 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~  479 (487)
                      ..+...|.||++.+.+    ++.++|||.| |..|+.+|....   ..||+||+.+.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            3455789999999988    9999999999 999999998764   68999999875

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.99  E-value=1.8e-10  Score=81.01  Aligned_cols=46  Identities=33%  Similarity=0.832  Sum_probs=40.7

Q ss_pred             ccccccccccCCc----eEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          433 TSSCVICLDAPVE----GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      ...|.||++...+    ++.++|||.| |..|+.+|......||+||+.|.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence            3589999998755    7889999999 99999999887789999999875

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=2.2e-10  Score=88.38  Aligned_cols=49  Identities=33%  Similarity=0.772  Sum_probs=43.3

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc------CCcccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK------KWGCPVCRANIS  479 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~  479 (487)
                      ..+...|.||++.+.+++.++|||.| |..|+..|...      ...||+||+.+.
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             ccCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            34457899999999999999999999 99999998765      568999999987

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.98  E-value=2.3e-10  Score=80.41  Aligned_cols=47  Identities=26%  Similarity=0.676  Sum_probs=40.8

Q ss_pred             cccccccccccCCc---eEEcC-CCCccchHhhHHHHhccCCcccccccccc
Q 040660          432 ATSSCVICLDAPVE---GACVP-CGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       432 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      +..+|.||++...+   ++.++ |||.| |..|+.+|...+..||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence            34689999998877   67777 99999 99999999988889999998763

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.97  E-value=1.3e-10  Score=88.50  Aligned_cols=49  Identities=33%  Similarity=0.754  Sum_probs=43.1

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc-------CCcccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-------KWGCPVCRANIS  479 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CP~Cr~~i~  479 (487)
                      ..+...|.||++.+.+++.++|||.| |..|+.+|...       ...||+||+.+.
T Consensus         9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            34557899999999999999999999 99999998775       458999999985

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.97  E-value=3.4e-10  Score=85.86  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=43.6

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~  479 (487)
                      .+...|+||++...+++.++|||.| |..|+.+|... ...||+||+++.
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             cccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCC
Confidence            4457899999999999999999999 99999999876 668999999986

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.96  E-value=3.2e-10  Score=88.70  Aligned_cols=49  Identities=29%  Similarity=0.585  Sum_probs=42.6

Q ss_pred             CcccccccccccCCc---eEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660          431 DATSSCVICLDAPVE---GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      ++...|.||++.+..   ++.+||||.| |..|+..|...+..||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence            344689999988776   7778999999 999999999888899999998864

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=8e-10  Score=79.99  Aligned_cols=44  Identities=30%  Similarity=0.832  Sum_probs=38.6

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhc---cCCccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA---KKWGCPVC  474 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~C  474 (487)
                      ..+...|.||++.+.+++.++|||.| |..|+.+|..   ....||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence            34557899999999999999999999 9999999987   34579998

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.95  E-value=3.4e-10  Score=85.27  Aligned_cols=54  Identities=22%  Similarity=0.635  Sum_probs=41.9

Q ss_pred             CcccccccccccC--CceEEcC--CCCccchHhhHHHHhcc-CCccccccccccceeEee
Q 040660          431 DATSSCVICLDAP--VEGACVP--CGHMAGCMSCLNEVKAK-KWGCPVCRANISQVIRLY  485 (487)
Q Consensus       431 ~~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~~~~y  485 (487)
                      ++...|+||++..  .+.+++|  |||.| |..|+.+++.. ...||+||+++.....+|
T Consensus         9 ~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~   67 (78)
T 1e4u_A            9 EDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY   67 (78)
T ss_dssp             CCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred             ccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence            4457899999976  3456666  99999 99999998754 458999999997644333

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.94  E-value=4.9e-10  Score=87.91  Aligned_cols=49  Identities=27%  Similarity=0.680  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCceEEcC-CCCccchHhhHHHHhccC--Ccccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVP-CGHMAGCMSCLNEVKAKK--WGCPVCRANIS  479 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~  479 (487)
                      ..+...|+||++.+.+++.++ |||.| |..|+..|....  ..||+||+.+.
T Consensus        10 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            445679999999999999999 99999 999999997543  48999999973

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.91  E-value=4.1e-10  Score=89.71  Aligned_cols=48  Identities=25%  Similarity=0.699  Sum_probs=43.5

Q ss_pred             CcccccccccccCCceEE-cCCCCccchHhhHHHHhccC-Ccccccccccc
Q 040660          431 DATSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAKK-WGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~  479 (487)
                      .+...|.||++.+.+++. ++|||.| |..|+.+|.... ..||+||.++.
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence            345789999999999999 9999999 999999998876 58999999985

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.90  E-value=1e-09  Score=77.96  Aligned_cols=44  Identities=32%  Similarity=0.836  Sum_probs=37.9

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhc---cCCccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA---KKWGCPVC  474 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~C  474 (487)
                      ..+...|.||++...+++.++|||.| |..|+.+|..   ....||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence            34457899999999999999999999 9999999943   45589998

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.89  E-value=6.9e-10  Score=80.88  Aligned_cols=46  Identities=24%  Similarity=0.583  Sum_probs=37.9

Q ss_pred             ccccccccc-cCCce----EEcCCCCccchHhhHHHHhcc-CCcccccccccc
Q 040660          433 TSSCVICLD-APVEG----ACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~  479 (487)
                      +..|+||++ ...++    +.++|||.| |..|+.+|..+ ...||+||+++.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~   54 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCccc
Confidence            358999999 55555    568999999 99999999554 457999999996

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.87  E-value=2.1e-10  Score=80.77  Aligned_cols=45  Identities=27%  Similarity=0.589  Sum_probs=39.0

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      .+...|.||++.+.+++.+||||.| |..|+..+   ...||+||+.+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcc-cHHHHccC---CCCCCcCCcEee
Confidence            4457899999999999999999999 99998774   337999999886

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.86  E-value=8.9e-10  Score=87.68  Aligned_cols=49  Identities=24%  Similarity=0.601  Sum_probs=44.1

Q ss_pred             CcccccccccccCCceEEc-CCCCccchHhhHHHHhccCCccccccccccc
Q 040660          431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      .+...|.||++...+++.+ +|||.| |..|+..|...+..||+||..+..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           20 DDLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence            3457899999999999988 999999 999999999887899999999873

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.86  E-value=9.2e-10  Score=91.51  Aligned_cols=48  Identities=25%  Similarity=0.667  Sum_probs=42.6

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhccCC-ccccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANISQ  480 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~  480 (487)
                      +...|+||++.+.+++.++|||.| |..|+..|..... .||+||+.+..
T Consensus        51 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence            446899999999999999999999 9999999987543 89999999965

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.84  E-value=1.5e-09  Score=87.89  Aligned_cols=49  Identities=20%  Similarity=0.600  Sum_probs=44.4

Q ss_pred             CcccccccccccCCceEEc-CCCCccchHhhHHHHhccCCccccccccccc
Q 040660          431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~  480 (487)
                      .+...|.||++.+.+++.+ +|||.| |..|+..|......||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence            4457899999999999997 999999 999999999887899999999874

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.84  E-value=2.5e-09  Score=82.18  Aligned_cols=48  Identities=10%  Similarity=-0.025  Sum_probs=44.2

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      .+...|+||++...++|.++|||.| |..|+..|+.....||+||+++.
T Consensus        12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~   59 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLT   59 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCC
Confidence            4558999999999999999999999 99999999987779999999886

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.81  E-value=5.4e-09  Score=82.50  Aligned_cols=48  Identities=10%  Similarity=-0.028  Sum_probs=44.3

Q ss_pred             CcccccccccccCCceEEcCCC-CccchHhhHHHHhccCCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCG-HMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      .+...|+||++...++|.++|| |.| |..|+.+|+.....||+||+++.
T Consensus        20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~   68 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLT   68 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCC
T ss_pred             cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCC
Confidence            4568999999999999999999 999 99999999987778999999986

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.81  E-value=9.7e-10  Score=90.09  Aligned_cols=49  Identities=33%  Similarity=0.805  Sum_probs=43.3

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  480 (487)
                      .+...|.||++...+++.++|||.| |..|+.+|... ...||+||+.+..
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence            4457899999999999999999999 99999999866 5589999998863

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.80  E-value=2e-09  Score=105.07  Aligned_cols=50  Identities=34%  Similarity=0.822  Sum_probs=45.2

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhc-cCCccccccccccceeEe
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRANISQVIRL  484 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~~~~~  484 (487)
                      ..|+||++...+++.+||||.| |..|+..|.. ....||+||+++.....+
T Consensus       333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i  383 (389)
T 2y1n_A          333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI  383 (389)
T ss_dssp             SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred             CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence            6899999999999999999999 9999999987 567899999999876554

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.79  E-value=1.9e-09  Score=92.44  Aligned_cols=48  Identities=27%  Similarity=0.645  Sum_probs=43.0

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhccCC-ccccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANISQ  480 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~  480 (487)
                      +...|.||++.+.+++.++|||.| |..|+..|..... .||+||..+..
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence            446899999999999999999999 9999999987644 79999999874

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.79  E-value=1e-08  Score=81.17  Aligned_cols=48  Identities=10%  Similarity=0.000  Sum_probs=44.4

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      .+...|+||++...++|.++|||.| |..|+.+|+.....||+||.++.
T Consensus        27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~   74 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLT   74 (100)
T ss_dssp             STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCC
T ss_pred             cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCC
Confidence            4568999999999999999999999 99999999987779999999986

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.77  E-value=1.4e-09  Score=105.82  Aligned_cols=51  Identities=31%  Similarity=0.911  Sum_probs=45.6

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA  486 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~  486 (487)
                      +...|+||++.+.+++++||||.++|..|+..+.    .||+||.+|..++++|.
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~  344 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFL  344 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC-
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeec
Confidence            4478999999999999999999944999999884    59999999999999984

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.77  E-value=4e-09  Score=86.73  Aligned_cols=50  Identities=30%  Similarity=0.589  Sum_probs=44.0

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCC-ccccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANISQ  480 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~  480 (487)
                      ..+...|+||++...+++.++|||.| |..|+..|..... .||+||.++..
T Consensus        15 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            34557999999999999999999999 9999999987644 89999999874

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.74  E-value=3.1e-09  Score=93.00  Aligned_cols=48  Identities=27%  Similarity=0.615  Sum_probs=43.0

Q ss_pred             CcccccccccccCCceEEc-CCCCccchHhhHHHHhcc-CCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAK-KWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~  479 (487)
                      .+...|+||++.+.+++.+ +|||.| |..|+..|... ...||+||..+.
T Consensus        52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence            4457999999999999987 999999 99999999886 668999999985

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.74  E-value=4.4e-09  Score=86.01  Aligned_cols=46  Identities=22%  Similarity=0.624  Sum_probs=38.2

Q ss_pred             cccccccccCCceE------------------EcCCCCccchHhhHHHHh-----ccCCccccccccccc
Q 040660          434 SSCVICLDAPVEGA------------------CVPCGHMAGCMSCLNEVK-----AKKWGCPVCRANISQ  480 (487)
Q Consensus       434 ~~C~iC~~~~~~~~------------------~~pCgH~~~C~~C~~~~~-----~~~~~CP~Cr~~i~~  480 (487)
                      ..|.||++.+..+.                  +++|||.| |..|+..|.     .....||+||+.+..
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            58999999875533                  78999999 999999998     345589999998853

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.73  E-value=2.4e-09  Score=87.32  Aligned_cols=47  Identities=30%  Similarity=0.745  Sum_probs=41.8

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhccC---Ccccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK---WGCPVCRANIS  479 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~  479 (487)
                      +...|.||++.+.+++.++|||.| |..|+..|....   ..||+||..+.
T Consensus        20 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            346899999999999999999999 999999998754   37999999886

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.69  E-value=5e-09  Score=88.71  Aligned_cols=48  Identities=23%  Similarity=0.463  Sum_probs=42.5

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCC-ccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANI  478 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i  478 (487)
                      .++...|+||++.+.+++.++|||.| |..|+.+|..... .||+||.++
T Consensus        28 l~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CCcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence            34567999999999999999999999 9999999987554 899999975

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=8.1e-09  Score=78.64  Aligned_cols=45  Identities=20%  Similarity=0.514  Sum_probs=37.6

Q ss_pred             cccccccccCCc--------------eEEc-CCCCccchHhhHHHHhccCCcccccccccc
Q 040660          434 SSCVICLDAPVE--------------GACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       434 ~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      ..|.||++...+              .+.+ +|||.| |..|+.+|...+..||+||+++.
T Consensus        16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcc
Confidence            468888887755              3444 599999 99999999988889999999875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.68  E-value=6.9e-09  Score=87.23  Aligned_cols=52  Identities=37%  Similarity=0.798  Sum_probs=45.1

Q ss_pred             ccccccccccCCce-------EEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660          433 TSSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY  485 (487)
Q Consensus       433 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y  485 (487)
                      ...|.||++...++       +.++|||.| |..|+.+|...+..||+||+.+.  .+.++|
T Consensus         7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~   67 (133)
T 4ap4_A            7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY   67 (133)
T ss_dssp             SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTTTCEEECB
T ss_pred             CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCccccccccc
Confidence            46899999998887       889999999 99999999988889999999997  344444

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.68  E-value=6.8e-09  Score=85.13  Aligned_cols=48  Identities=25%  Similarity=0.496  Sum_probs=43.3

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ  480 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  480 (487)
                      +...|+||++.+.+++.++|||.| |..|+.+|... ...||+||.++..
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            457899999999999999999999 99999999876 5689999999863

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.64  E-value=9.4e-09  Score=86.40  Aligned_cols=53  Identities=36%  Similarity=0.786  Sum_probs=46.5

Q ss_pred             cccccccccccCCce-------EEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660          432 ATSSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY  485 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y  485 (487)
                      +...|.||++...++       +.++|||.| |..|+.+|......||+||..+.  +++++|
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence            346899999988765       888999999 99999999988889999999996  578887

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.56  E-value=9.9e-09  Score=84.23  Aligned_cols=46  Identities=28%  Similarity=0.739  Sum_probs=41.3

Q ss_pred             CcccccccccccCCceEEc-CCCCccchHhhHHHHhccCCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      .+...|+||++.+.+++.+ +|||.| |..|+..|..  ..||+||..+.
T Consensus        20 ~~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           20 EKLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hhCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc--CCCcCCCCcCc
Confidence            3457899999999999999 999999 9999999976  57999999985

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.51  E-value=5.8e-08  Score=77.55  Aligned_cols=46  Identities=20%  Similarity=0.438  Sum_probs=38.8

Q ss_pred             ccccccccccCCce------------------EEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          433 TSSCVICLDAPVEG------------------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      ...|.||++.+...                  +.++|+|.| +..|+..|...+..||+||+.+.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence            35799999876543                  557999999 99999999988889999999864

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.46  E-value=7.2e-08  Score=91.94  Aligned_cols=47  Identities=17%  Similarity=0.078  Sum_probs=42.1

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhccCC-cccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANIS  479 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~  479 (487)
                      ....|+||++...++|.+||||.| |..|+.+|+.... .||+||.++.
T Consensus       207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCc
Confidence            347899999999999999999999 9999999987644 4999999986

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.43  E-value=8.5e-08  Score=84.22  Aligned_cols=50  Identities=30%  Similarity=0.610  Sum_probs=43.9

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhccC-Cccccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK-WGCPVCRANISQ  480 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~  480 (487)
                      .++...|+||++.+.+++.++|||.| |..|+.+|.... ..||+||..+..
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence            45568999999999999999999999 999999997653 489999999864

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.43  E-value=7.9e-08  Score=75.35  Aligned_cols=45  Identities=18%  Similarity=0.328  Sum_probs=39.3

Q ss_pred             cccccccccccCCceEEcC-CCCccchHhhHHHHhccC------Ccccc--cccc
Q 040660          432 ATSSCVICLDAPVEGACVP-CGHMAGCMSCLNEVKAKK------WGCPV--CRAN  477 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~------~~CP~--Cr~~  477 (487)
                      +...|+||++.+.++|.++ |||.| |..|+..|+...      ..||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            4478999999999999996 99999 999999998653      48999  9855

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.42  E-value=1.3e-07  Score=82.61  Aligned_cols=49  Identities=18%  Similarity=0.101  Sum_probs=43.2

Q ss_pred             CcccccccccccCCceEEcCCCCccchHhhHHHHhccC-Cccccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK-WGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~  480 (487)
                      .+...|+||++...++|.+||||.| |..|+..|+... ..||+||.++..
T Consensus       104 p~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          104 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            4558999999999999999999999 999999998763 369999998863

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.27  E-value=1.1e-07  Score=76.88  Aligned_cols=45  Identities=20%  Similarity=0.448  Sum_probs=0.0

Q ss_pred             cccccccccCCce------------------EEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          434 SSCVICLDAPVEG------------------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       434 ~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      ..|.||++.+.+.                  +.++|+|.| |..|+.+|...+..||+||+++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence            5899999887542                  235999999 99999999988889999999853

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=8.1e-07  Score=66.95  Aligned_cols=48  Identities=21%  Similarity=0.487  Sum_probs=38.8

Q ss_pred             cccccccccccC--CceEEcCCC-----CccchHhhHHHHhccC--Cccccccccccc
Q 040660          432 ATSSCVICLDAP--VEGACVPCG-----HMAGCMSCLNEVKAKK--WGCPVCRANISQ  480 (487)
Q Consensus       432 ~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CP~Cr~~i~~  480 (487)
                      +...|.||++..  .+.+++||.     |.| ...|+.+|...+  ..||+||..+.-
T Consensus        14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            346899999755  456678996     999 999999998764  489999998863

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.12  E-value=1.1e-06  Score=62.52  Aligned_cols=51  Identities=14%  Similarity=0.178  Sum_probs=45.0

Q ss_pred             cccccccccCCceEEc-CCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660          434 SSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY  485 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y  485 (487)
                      ..|+||++...++|.. +|||.| |..|+.+|......||++++++.  .+++++
T Consensus         4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence            5899999999999999 999999 99999999877678999999985  455554

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.11  E-value=1.4e-06  Score=79.80  Aligned_cols=47  Identities=17%  Similarity=0.281  Sum_probs=41.1

Q ss_pred             cccccccccccCCceEEc-CCCCccchHhhHHHHhccC--Ccccc--cccccc
Q 040660          432 ATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKK--WGCPV--CRANIS  479 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~CP~--Cr~~i~  479 (487)
                      ....|+||++.+.++|.. .|||.| |..|+.+++...  ..||+  ||+.+.
T Consensus       180 ~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          180 IELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             CCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             eeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            347899999999999974 999999 999999998753  47999  999875

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.95  E-value=2.8e-06  Score=66.42  Aligned_cols=44  Identities=25%  Similarity=0.606  Sum_probs=34.9

Q ss_pred             ccccccccccCCceEEc---CCCCccchHhhHHHHhcc--------CCcccc--cccc
Q 040660          433 TSSCVICLDAPVEGACV---PCGHMAGCMSCLNEVKAK--------KWGCPV--CRAN  477 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~---pCgH~~~C~~C~~~~~~~--------~~~CP~--Cr~~  477 (487)
                      ...|.||++.......+   +|||.| |..|+...+..        ...||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            46899999987665443   799999 99999887542        237999  9988

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.69  E-value=5.8e-05  Score=55.48  Aligned_cols=49  Identities=27%  Similarity=0.634  Sum_probs=39.7

Q ss_pred             CcccccccccccCCceE-EcCCCCccchHhhHHHHhccC--Cccccccccccc
Q 040660          431 DATSSCVICLDAPVEGA-CVPCGHMAGCMSCLNEVKAKK--WGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~~  480 (487)
                      +...+|.||++...... +..|+|.| -..|+.+|.+.+  ..||+||.....
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            44478999999876444 34899999 999999998776  689999998753

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.66  E-value=4.1e-05  Score=58.58  Aligned_cols=49  Identities=24%  Similarity=0.514  Sum_probs=35.9

Q ss_pred             ccccccccCCc-eEEcCCCCccchHhhHHHHhcc-CCccccccccccceeEe
Q 040660          435 SCVICLDAPVE-GACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQVIRL  484 (487)
Q Consensus       435 ~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~~~~  484 (487)
                      -|.+|--.... ...+||.|.| |+.|+..+..+ .+.||.|+.+|..+-++
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~   53 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC   53 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred             ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence            46677433222 2357999999 99999998644 56899999999877553

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.37  E-value=9.5e-05  Score=52.10  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=37.4

Q ss_pred             CcccccccccccCCceEEcCCCC-----ccchHhhHHHHhcc--CCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCGH-----MAGCMSCLNEVKAK--KWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCgH-----~~~C~~C~~~~~~~--~~~CP~Cr~~i~  479 (487)
                      ++...|.||++...+..+.||.+     .| -..|+.+|...  +..||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~-H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhhh-HHHHHHHHHHhCCCCccCCCCCeee
Confidence            34468999998776666789764     45 99999999764  458999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.21  E-value=7.4e-05  Score=70.73  Aligned_cols=49  Identities=27%  Similarity=0.594  Sum_probs=37.6

Q ss_pred             CcccccccccccCCc------eEE--cCCCCccchHhhHHHHhccC-----------Cccccccccccc
Q 040660          431 DATSSCVICLDAPVE------GAC--VPCGHMAGCMSCLNEVKAKK-----------WGCPVCRANISQ  480 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~------~~~--~pCgH~~~C~~C~~~~~~~~-----------~~CP~Cr~~i~~  480 (487)
                      +...+|.||++...+      .++  .+|||.| ...|+.+|.+..           +.||+||++|..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            445789999986654      122  3799999 999999997641           469999999863

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=93.62  E-value=0.043  Score=39.64  Aligned_cols=32  Identities=28%  Similarity=0.627  Sum_probs=27.9

Q ss_pred             ccccccccccCCceEEcCCC----CccchHhhHHHHh
Q 040660          433 TSSCVICLDAPVEGACVPCG----HMAGCMSCLNEVK  465 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~  465 (487)
                      ...|.+|.++..+.-|+.|-    |.| |+.|.+...
T Consensus        15 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sI   50 (93)
T 2cs3_A           15 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESI   50 (93)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHH
T ss_pred             eeEeecchhhhccCceeeCCCccCCee-eccccHHHH
Confidence            36899999999999999885    999 999988753

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=92.43  E-value=0.099  Score=47.70  Aligned_cols=46  Identities=22%  Similarity=0.546  Sum_probs=36.6

Q ss_pred             ccccccccccCCceEEc-CCCCccchHhhHHHHhccC--Ccccccccccc
Q 040660          433 TSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKK--WGCPVCRANIS  479 (487)
Q Consensus       433 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~  479 (487)
                      ...|.||.+.......- .|+|.| ...|+.++.+..  ..||.|+....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            36899999977655543 499999 999999997653  48999998765

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.59  E-value=0.074  Score=41.41  Aligned_cols=30  Identities=23%  Similarity=0.544  Sum_probs=24.7

Q ss_pred             ccccccccc-CCceEE--cCCCCccchHhhHHHH
Q 040660          434 SSCVICLDA-PVEGAC--VPCGHMAGCMSCLNEV  464 (487)
Q Consensus       434 ~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~~  464 (487)
                      ..|.||.+. +..++.  +.|+|.| |..|+..+
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~~   36 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKAT   36 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHHH
T ss_pred             CCCcCCCCCCCCCceEECCcCChHH-hHHHCHHH
Confidence            579999974 455555  8999999 99999983

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	487
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-12
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.004
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-05
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	4e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-09
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.003
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-08
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	8e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-07
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	4e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	8e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	4e-06
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	8e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-05
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	9e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	5e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 1e-15
 Identities = 31/104 (29%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 42  TPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
           TPL  A    G   + K L++ GA  +         TPLH AA+ G     K LL   A 
Sbjct: 2   TPLHVASFM-GHLPIVKNLLQRGASPNV--SNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 102 ALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGP 145
                 D QTPL  A   G TN+V+ +  +    +      + P
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 2e-15
 Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G++  +K L + GA     + + +TPL  A    G  +VAK L++  AKV+A 
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNA- 61

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
              +   TPLH AA+ G    VKLLL   AN  +      TPL +A
Sbjct: 62  -KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 106

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (184), Expect = 2e-15
 Identities = 39/150 (26%), Positives = 57/150 (38%), Gaps = 32/150 (21%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G+ E +  L    A     +K G TPL       G   VA  LI+ G  VDA 
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVMVDAT 293

Query: 71  RPG-------------------------------RHGGTPLHHAAKRGLERTVKLLLSYG 99
                                             + G +PLH AA++G    V LLL  G
Sbjct: 294 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 353

Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
           A+   ++ D  TPL +A+  G+ +V   ++
Sbjct: 354 ASPNEVSSDGTTPLAIAKRLGYISVTDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 36/152 (23%), Positives = 55/152 (36%), Gaps = 32/152 (21%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G+ E  K L ++ A +    K+ +TPL  A    G  ++ K L+E  A  +  
Sbjct: 37  LHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI-GHTNMVKLLLENNANPNLA 95

Query: 71  RP-------------------------------GRHGGTPLHHAAKRGLERTVKLLLSYG 99
                                             + G TPLH AAK G  R  +LLL   
Sbjct: 96  TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD 155

Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           A+      +  TPL VA      ++V+ +   
Sbjct: 156 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 187

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 2e-10
 Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 3/88 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+   +YGN++ +K L +  A +    K G +PL  A    G  D+   L++ GA  +  
Sbjct: 301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ-GHTDIVTLLLKNGASPNE- 358

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSY 98
                G TPL  A + G      +L   
Sbjct: 359 -VSSDGTTPLAIAKRLGYISVTDVLKVV 385

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 3e-10
 Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 3/112 (2%)

Query: 27  CRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86
               A    + K+G TPL  A    G   VA+ L+E  A  +A   G++G TPLH A   
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHPNA--AGKNGLTPLHVAVHH 175

Query: 87  GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGW 138
                VKLLL  G +      +  TPL +A  +    V R++  +    +  
Sbjct: 176 NNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAE 227

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 1e-08
 Identities = 30/125 (24%), Positives = 47/125 (37%), Gaps = 3/125 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+       VE  ++L + G        +G TPL  A    G  ++   L+   A  +  
Sbjct: 202 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE-GHAEMVALLLSKQANGNL- 259

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
              + G TPLH  A+ G      +L+ +G           TPL VA   G   +V+ +  
Sbjct: 260 -GNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 318

Query: 131 HICIF 135
           H    
Sbjct: 319 HQADV 323

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 5e-08
 Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 3/135 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+  V++ N++ +K L   G         G TPL          +VA++L++      A 
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI-AAKQNQVEVARSLLQ--YGGSAN 225

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
                G TPLH AA+ G    V LLLS  AN  + N    TPL +   +G   V   +  
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 131 HICIFSGWLRELYGP 145
           H  +     R  Y P
Sbjct: 286 HGVMVDATTRMGYTP 300

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 68.8 bits (167), Expect = 2e-13
 Identities = 18/114 (15%), Positives = 31/114 (27%), Gaps = 4/114 (3%)

Query: 16  NYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
               ++ +  L      ++ I  E       A  N G   V   L EL            
Sbjct: 102 CSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAE 160

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANA---LVLNDDCQTPLEVARAKGFTNVVR 126
                  AA+ G    +  L          ++  ++       A  +G  NV+ 
Sbjct: 161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVIN 214

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 57.2 bits (137), Expect = 1e-09
 Identities = 15/144 (10%), Positives = 30/144 (20%), Gaps = 14/144 (9%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN--PGLYDVAKTLIELGAKV 67
           L Y   N    +         +       + +     A +       D    L+     V
Sbjct: 67  LYYAHYNRNAKQLW-------SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIV 119

Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQ--TPL-EVARAKGFTNV 124
                          AA+ G    +  L       ++     +        A       +
Sbjct: 120 KV--IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL 177

Query: 125 VRAIENHICIFSGWLRELYGPGFL 148
            R  E      +  ++      F 
Sbjct: 178 NRLCELAPTEATAMIQAENYYAFR 201

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 54.1 bits (129), Expect = 1e-08
 Identities = 17/115 (14%), Positives = 28/115 (24%), Gaps = 18/115 (15%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
           YG       + R         KE       +  + G++D+                G + 
Sbjct: 233 YGEKYVNPFIARHVNR----LKEMHDAFKLSNPD-GVFDLVTK--------SECLQGFYM 279

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLND-----DCQTPLEVARAKGFTNVVR 126
              L       L   ++ LLS      +        D    L +A   G      
Sbjct: 280 LRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 18/121 (14%), Positives = 26/121 (21%), Gaps = 11/121 (9%)

Query: 17  YGNVEGIKALCRDGAGLEWIDKE--GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74
            G++  +  LC           +         A  N  L+ +   L EL           
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVL-NRLCELAPTEATAMIQA 194

Query: 75  HGG-TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
                    A  RG    +  LL                       G   V   I  H+ 
Sbjct: 195 ENYYAFRWAAVGRGHHNVINFLLDCP-------VMLAYAEIHEFEYGEKYVNPFIARHVN 247

Query: 134 I 134
            
Sbjct: 248 R 248

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.1 bits (116), Expect = 5e-07
 Identities = 12/66 (18%), Positives = 17/66 (25%), Gaps = 4/66 (6%)

Query: 37  DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPG---RHGGTPLHHAAKRGLERTVK 93
                  LI       L D  + L+ +                   L  A + G +    
Sbjct: 276 GFYMLRNLIRRNDE-VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

Query: 94  LLLSYG 99
           LLLS  
Sbjct: 335 LLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.2 bits (111), Expect = 2e-06
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 13/106 (12%)

Query: 33  LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV---------DAYRPGRHGGTPLHHA 83
           L  +  +    +        +  V + L    A           DA++ G         A
Sbjct: 39  LMTLSYKEAIHIFLPGTK-NMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVA 97

Query: 84  AKRG---LERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           A  G      T+ LLL+      V+  +      +A   G  +V+ 
Sbjct: 98  AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLN 143

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 66.7 bits (161), Expect = 6e-13
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 27  CRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86
               A  +    +G+T L  A     +  V   + E G+     +    G TP+  AA+ 
Sbjct: 174 YDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK--DKQDEDGKTPIMLAAQE 231

Query: 87  GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
           G    V  L+  GA+   ++    T  ++A+A    N+V   +
Sbjct: 232 GRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.5 bits (145), Expect = 8e-11
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 11  LYQQVNYGNVEGIKALC-RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           L+      N+  +K L    G+  +  D++GKTP++ A    G  +V   LI+ GA V+A
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE-GRIEVVMYLIQQGASVEA 249

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSY 98
                   T    A        V +    
Sbjct: 250 --VDATDHTARQLAQANNHHNIVDIFDRC 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 49.3 bits (116), Expect = 3e-07
 Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 41  KTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSY-- 98
           ++P+       G Y + + +      +      RH  T LH  A        + L+ +  
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI---IDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 99  ------GANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGW 138
                 GA+   ++ D  TPL +A       +V  +       + +
Sbjct: 58  KECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY 103

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 3e-12
 Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 7/126 (5%)

Query: 11  LYQQVNYGNVEGIKALC-RDGAGLEWIDKEGKTPLIA---ACMNPGLYDVAKTLIELGAK 66
           L      G+VE +K L    GA +   D  G+  LI    +  +  +  +   L++ GA 
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 67  VDAYRPGRHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVV 125
           V+    G  G TPL  A ++     V+ LL          + D +T L +A       + 
Sbjct: 212 VNV--RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269

Query: 126 RAIENH 131
             +   
Sbjct: 270 ELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 5e-12
 Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 4/91 (4%)

Query: 12  YQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-GAKVDAY 70
               +         L   GA +    + GKTPLI A        + + L+E    +++  
Sbjct: 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK-KHLGLVQRLLEQEHIEIND- 248

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
                G T L  A +  L++  +LL   GA+
Sbjct: 249 -TDSDGKTALLLAVELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-08
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 39  EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSY 98
           E    LI A  N    D+ + L+E GA V+  +    G TPLH+A +   E  V+LLL +
Sbjct: 4   EDNHLLIKAVQN-EDVDLVQQLLEGGANVNF-QEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 99  GANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGW 138
           GA+ ++   +  TP  +A   G   +++   +     +  
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNEC 101

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 4e-08
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 34  EWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGAKVDA--YRPGRHGGTPLHHAAKRGLER 90
           E + K G T L+ A    G  +V K L+ E+GA V+A            L  +    +E 
Sbjct: 142 ERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEA 200

Query: 91  TVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
              LLL +GA+  V  +  +TPL +A  K    +V+ +   
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ 241

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 5e-07
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)

Query: 11  LYQQVNYGNVEGIKALC-RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           L   V   ++  ++ L  ++   +   D +GKT L+ A     L  +A+ L + GA  D 
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL-KLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 4/132 (3%)

Query: 8   EELLYQQVNYGNVEGIKALCRDGAGLEWIDKE-GKTPLIAACMNPGLYDVAKTLIELGAK 66
             LL + V   +V+ ++ L   GA + + ++E G TPL  A       D+ +  + L   
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVE--LLLRHG 62

Query: 67  VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
            D     ++G TP   AA  G  + +KL LS GA+    +    T    A   G    ++
Sbjct: 63  ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122

Query: 127 AIENHICIFSGW 138
            +       +  
Sbjct: 123 FLYKRGANVNLR 134

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 8/126 (6%)

Query: 15  VNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL-------IELGAKV 67
              G+V+ +K     GA +   D  G T  + A +   +  +           +    K 
Sbjct: 80  AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139

Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVR 126
           D  R  + G T L  AA++G    +K+LL   GA+    ++  +  L  A      + V 
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199

Query: 127 AIENHI 132
           AI + +
Sbjct: 200 AITHLL 205

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.4 bits (155), Expect = 4e-12
 Identities = 29/107 (27%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 26  LCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85
           L           K G T L  A    G  +V K LI+    V+       G TPLH AA 
Sbjct: 185 LNSGHINDVRHAKSGGTALHVAAAK-GYTEVLKLLIQARYDVNIKD--YDGWTPLHAAAH 241

Query: 86  RGLERTVKLLLSYGANALVLNDDCQTPLEVARAK--GFTNVVRAIEN 130
            G E   ++L+    +   +N   QT  +VA     G+   ++  +N
Sbjct: 242 WGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+     G  E +K L +    +   D +G TPL AA    G  +  + L+E    ++A 
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW-GKEEACRILVENLCDMEA- 260

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN 106
              + G T    A     E  +  L        +L+
Sbjct: 261 -VNKVGQTAFDVAD----EDILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 16/71 (22%), Positives = 24/71 (33%)

Query: 75  HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI 134
             G     A   G    V  LL  GA+    N D  T L  A      ++V+ +  +   
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGAN 98

Query: 135 FSGWLRELYGP 145
            +    E + P
Sbjct: 99  INQPDNEGWIP 109

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.2 bits (100), Expect = 3e-05
 Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG 87
          +  +     +AAC + G  +    L+E GA ++       G T LH A    
Sbjct: 36 VKFDDGAVFLAACSS-GDTEEVLRLLERGADINY--ANVDGLTALHQACIDD 84

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
           R  + GGT LH AA +G    +KLL+    +  + + D  TPL  A   G     R +  
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 131 H 131
           +
Sbjct: 254 N 254

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 1e-11
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 4/118 (3%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           L+   +    E    L   GA  +  D    T +  A    G   +   L+   A  +  
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK-GNLKMIHILLYYKASTNI- 164

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
                G TPLH A         KLL+S GA+  + N + +TPL+VA   G   +++ +
Sbjct: 165 -QDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRM 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 3e-09
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 35/157 (22%)

Query: 10  LLYQQVNYGNVEGIK-ALCRDGAGLEWIDKEGKTPLIAACMN------------------ 50
           ++      G +E +K ++  D +     D++ +T L  AC                    
Sbjct: 6   MVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 65

Query: 51  --------------PGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
                          G  ++ K L+  GA+V+A    ++G TPLH+AA +       +LL
Sbjct: 66  KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA--VNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 97  SYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
             GAN    +    T +  A AKG   ++  +  +  
Sbjct: 124 EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA 160

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 3e-07
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
           +++    GN++ I  L    A     D EG TPL  AC      + AK L+  GA +   
Sbjct: 140 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDE-ERVEEAKLLVSQGASIYI- 197

Query: 71  RPGRHGGTPLHHAAKRGLERTVKLLL 96
              +   TPL  A   GL   +K ++
Sbjct: 198 -ENKEEKTPLQVAKG-GLGLILKRMV 221

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.8 bits (146), Expect = 7e-11
 Identities = 15/93 (16%), Positives = 31/93 (33%)

Query: 24  KALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83
             + +    ++    E ++             +    ++            +G T L+ A
Sbjct: 207 WIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIA 266

Query: 84  AKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
           A+ G    V  LL YGA+  + N     P++  
Sbjct: 267 ARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.8 bits (138), Expect = 7e-10
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 2/137 (1%)

Query: 4   QQSKEELLYQQVNYGNV-EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIE 62
           Q+ K E   Q++ +  + E   +L  D +                  +  L +V      
Sbjct: 35  QKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 94

Query: 63  LGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT 122
               ++      HG TPLH          VK L+ +G+N L  ++  ++ L  A      
Sbjct: 95  TQLNLNI-PVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 153

Query: 123 NVVRAIENHICIFSGWL 139
                 E  +      L
Sbjct: 154 YDSGTFEALLDYLYPCL 170

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.6 bits (122), Expect = 8e-08
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 20  VEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTP 79
           +E +         L   D  G T L  A    G   +   L++ GA        + G  P
Sbjct: 239 LENLDLKWIIANMLNAQDSNGDTCLNIAARL-GNISIVDALLDYGADPFI--ANKSGLRP 295

Query: 80  LHHAA 84
           +   A
Sbjct: 296 VDFGA 300

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (141), Expect = 2e-10
 Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 2/112 (1%)

Query: 33  LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY-RPGRHGGTPLHHAAKRGLERT 91
             ++ ++G T L  A ++         L+   A  +        G T LH AA  G   T
Sbjct: 2   FGYVTEDGDTALHLAVIH-QHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 92  VKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELY 143
           V+ L + GA  LV      T L +A           +            + Y
Sbjct: 61  VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 48  CMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGA 100
            +      V + L++ GA   A      G TPL  A  R      +LL ++GA
Sbjct: 199 AVEAQAASVLELLLKAGADPTA--RMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 5e-07
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 12  YQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVD 68
           +  V       ++ L + GA        G+TPL +A +      +A+ L   GA   
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLR-PNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 6e-06
 Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 2/122 (1%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
                      E           LE  + +G TPL  A ++     V    +        
Sbjct: 128 AAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRL--LRDAGADLN 185

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
                 G TPLH A +      ++LLL  GA+        +TPL  A  +    + R + 
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

Query: 130 NH 131
            H
Sbjct: 246 AH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 4e-05
 Identities = 21/139 (15%), Positives = 41/139 (29%), Gaps = 6/139 (4%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWI---DKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
           L+  V + +   +  L    AG E++   +  G+T L  A +     + +       A  
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL---GEASTVEKLYAAGA 69

Query: 68  DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRA 127
                 R G T LH A +        +LL    +      D             ++   A
Sbjct: 70  GVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA 129

Query: 128 IENHICIFSGWLRELYGPG 146
           +++     +          
Sbjct: 130 VDSQPNPENEEEPRDEDWR 148

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 4e-09
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
           C IC +   +    PCGH+       +  +++  GCP CR  I     + 
Sbjct: 26  CKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIV 75

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 8e-09
 Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 26  LCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85
           L R         K G++PLI A  N     + + L++ G   +       G + LH A+ 
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNS-LSMVQLLLQHG--ANVNAQMYSGSSALHSASG 186

Query: 86  RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
           RGL   V+ L+  GA++ + N    TPL VAR++   +++R
Sbjct: 187 RGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 76  GGTPLHHAAKRGLERTVKLLLSY----GANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           G TPLH A  +G    V  L++     G    + N+  QTPL +A      +VVR +   
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA 62

Query: 132 ICIFSGW 138
                  
Sbjct: 63  GASPMAL 69

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 33/131 (25%), Positives = 51/131 (38%), Gaps = 7/131 (5%)

Query: 39  EGKTPLIAACMNPGLYDVAKTLIEL----GAKVDAYRPGRHGGTPLHHAAKRGLERTVKL 94
           +G TPL  A +  G       L+ L    G ++D Y       TPLH A    L   V+L
Sbjct: 2   DGDTPLHIAVVQ-GNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRL 58

Query: 95  LLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ 154
           L++ GA+ + L+   QT   +A        +RA+ +     +  L      G   L    
Sbjct: 59  LVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV 118

Query: 155 LLSRKVWVAVL 165
               +  V +L
Sbjct: 119 NTECQETVQLL 129

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 8e-04
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAK 58
           L+     G +  ++ L R GA     +    TPL+ A     + D+ +
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSR-RVIDILR 227

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 52.9 bits (125), Expect = 1e-08
 Identities = 26/106 (24%), Positives = 40/106 (37%), Gaps = 3/106 (2%)

Query: 24  KALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83
           + L    A +   D  GKT L  A        V   L+      +         TPL  A
Sbjct: 107 EDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMH---HANRDAQDDKDETPLFLA 163

Query: 84  AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
           A+ G     K LL   AN  + +   + P +VA  +   ++VR ++
Sbjct: 164 AREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 41.7 bits (96), Expect = 7e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 56 VAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
          V   L+  GA+++A    + G T LH AA+       K L
Sbjct: 4  VISDLLAQGAELNA-TMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 11  LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
           L+     G+ E  KAL  + A  E  D   + P   A      +D+ + L
Sbjct: 160 LFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASER-LHHDIVRLL 208

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 436 CVICLDAPVEGA-CVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIR 483
           C ICL+ P   +  +PC H   C  C+     +   CP+C+  +  V+ 
Sbjct: 8   CPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH 55

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 8e-08
 Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)

Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479
           C  C         +PC H   C  CL     +   CP+C+A   
Sbjct: 9   CQQCQAEAKCPKLLPCLHTL-CSGCLEASGMQ---CPICQAPWP 48

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.0 bits (113), Expect = 2e-07
 Identities = 20/145 (13%), Positives = 37/145 (25%), Gaps = 39/145 (26%)

Query: 6   SKEELLYQQVNYGNVEGIKALCRDGAGL------EWIDKEGKTPLIAACMNP--GLYDVA 57
           +K   L + V   ++ G+     DG  L          +  +T L  A  +       + 
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 58  KTLIELGAKVDAYRPG-------------------------------RHGGTPLHHAAKR 86
             L++    +D                                      G TPL  A + 
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 124

Query: 87  GLERTVKLLLSYGANALVLNDDCQT 111
             E   +LL    +     +   + 
Sbjct: 125 KHEHCEELLTQALSGRFNSHVHVEY 149

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 409 VDVSSPSIEQLPCSKSKVKGDKDATSSCVICLDAPVEGACVPCGHM--AGCMSCLNEVKA 466
           +D+S+  +E++      V         C ICL+   E     C H+    CM  L   K 
Sbjct: 1   MDLSALRVEEV----QNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK 56

Query: 467 KKWGCPVCRANISQ 480
               CP+C+ +I++
Sbjct: 57  GPSQCPLCKNDITK 70

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 8e-07
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 4/95 (4%)

Query: 17  YGNVEGIKALCRDGAGL-EWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH 75
           +G +  ++ L   GA +       G+T L  A        V+  L       D  R    
Sbjct: 121 HGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---CGADVNRVTYQ 177

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQ 110
           G +P      R   R  + L       L +  + +
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 24/62 (38%)

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
            +   +G T LH A        V LLL  GA+   +     +P ++   +  T + + + 
Sbjct: 139 AQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 198

Query: 130 NH 131
             
Sbjct: 199 QL 200

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 76  GGTPLHHAAKRG----LERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
           G + LH A            ++ +    A     N+  QTPL +A       +  A+   
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 132 ICIFSGW 138
            C     
Sbjct: 62  GCDPELR 68

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 5/48 (10%)

Query: 39 EGKTPLIAACMN---PGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83
          +G + L  A ++       +V + +    A ++         TPLH A
Sbjct: 1  DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF--QNNLQQTPLHLA 46

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 9e-07
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 12  YQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR 71
           +  V     E  + L  +GA +   DK  + PL  A     L  +        + V    
Sbjct: 110 HLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV--NW 167

Query: 72  PGRHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
             + G TPL HA   G      LL+  YGA   ++++      +VA  +    V +   N
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 224

Query: 131 H 131
           +
Sbjct: 225 N 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 3e-06
 Identities = 18/93 (19%), Positives = 27/93 (29%), Gaps = 5/93 (5%)

Query: 10  LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
           L                    + + W DK+G TPL  A            + + GA+ D 
Sbjct: 142 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 201

Query: 70  YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANA 102
                 G      A     E+  K  L+   +A
Sbjct: 202 --VDNKGAKAEDVALN---EQVKKFFLNNVVDA 229

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 78  TPLHHAAKRGLERTVKLLL-SYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS 136
            PLH A        V+ LL S  +  L  + D + PL  + +     +   + + +   +
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 137 GW 138
             
Sbjct: 62  LD 63

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.4 bits (90), Expect = 4e-04
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 42 TPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
           PL  ACM    + V + L    + +      + G  PLH +           LLS  
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQ--KDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.6 bits (100), Expect = 4e-06
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKWGCPVCRANIS 479
           SC IC     +     C H+  C  C+   +K     CP CR    
Sbjct: 25  SCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCF 69

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 8e-05
 Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 435 SCVICLDAPVEGACV----PCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480
            C +C++             CG+             +   CP CR    +
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 9e-05
 Identities = 10/55 (18%), Positives = 15/55 (27%), Gaps = 1/55 (1%)

Query: 48  CMNPGLYDVAKTLIELGAKVDAY-RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
             +     V K L+E GA V A                + G  +  + L      
Sbjct: 74  AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK 128

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 37.9 bits (88), Expect = 9e-05
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 5/47 (10%)

Query: 436 CVICLDAPVEGA----CVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478
           C +CL    +G        CGH      C++        CP+CR  +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV 53

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (92), Expect = 1e-04
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 76  GGTPLHHAAKRGLERTVKLLLSYGAN 101
            G  L  AA+ G +  V++L++ GA 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAP 27

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 8/44 (18%), Positives = 11/44 (25%)

Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479
           C I    P      P        S L +        P+    +S
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS 46

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 27  CRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86
              GA +   D  G  P+  A        V+       A+ D +R    G TPL  A +R
Sbjct: 88  VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA----AESDLHRRDARGLTPLELALQR 143

Query: 87  GLERTVKLLLS 97
           G +  V +L  
Sbjct: 144 GAQDLVDILQG 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 5e-04
 Identities = 10/34 (29%), Positives = 12/34 (35%)

Query: 77  GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQ 110
           G  L  AA RG    +  LL    N    N   +
Sbjct: 2   GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 7/26 (26%), Positives = 9/26 (34%)

Query: 74  RHGGTPLHHAAKRGLERTVKLLLSYG 99
             G T    A   G    V L+ + G
Sbjct: 131 HKGDTACDLARLYGRNEVVSLMQANG 156

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 11/53 (20%), Positives = 16/53 (30%), Gaps = 7/53 (13%)

Query: 434 SSCVICLDAPVEGACV-----PCGHMAGCMSCLNE-VKAKKWGCPVCRANISQ 480
             C  C         +      CGH   C SC++         CP C   + +
Sbjct: 4   QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	487
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.96
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.94
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.91
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.83
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.83
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.17
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.06
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.03
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.0
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.98
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.92
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.88
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.86
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.81
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.79
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.61
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.6
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.59
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.55
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.32
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.41
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	92.07

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.8e-31  Score=249.45  Aligned_cols=193  Identities=22%  Similarity=0.178  Sum_probs=171.7

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAG---LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTP   79 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   79 (487)
                      ++++|+||||+||+.|+.++|++||++|++   ++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |.+|.||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~i~~~--d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhh-ccccccccccccccccccc--ccccchh
Confidence            689999999999999999999999999988   667788999999999999 9999999999999999998  8999999


Q ss_pred             HHHHHHhCCHHHHHHHHHc-----------------------------------------------CCCcccccCCCCCH
Q 040660           80 LHHAAKRGLERTVKLLLSY-----------------------------------------------GANALVLNDDCQTP  112 (487)
Q Consensus        80 Lh~Aa~~g~~~~v~~Ll~~-----------------------------------------------ga~~~~~d~~g~Tp  112 (487)
                      ||+|+..|+.+++++|++.                                               +.+++.+|.+|+||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            9999999999999998753                                               23455678889999


Q ss_pred             HHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchH
Q 040660          113 LEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPR  192 (487)
Q Consensus       113 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                      ||+|+.+++.++|++|++++++.+ ..++..|.|||| +|+..++.+++++|+++|++++.++..+..+++.+...+...
T Consensus       162 Lh~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~TpL~-~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             ccccccccccccccchhccccccc-cccccccccccc-ccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            999999999999999999998877 135678999999 888999999999999999999999888888888888888888


Q ss_pred             HHHHHHhc
Q 040660          193 MVIALWKA  200 (487)
Q Consensus       193 ~~~~l~~~  200 (487)
                      .+..|...
T Consensus       240 i~~~Ll~~  247 (255)
T d1oy3d_         240 LARLLRAH  247 (255)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            88776643

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-29  Score=231.53  Aligned_cols=186  Identities=22%  Similarity=0.191  Sum_probs=171.6

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|++|+||||+|+..|+.+++++|+..+.+....+..+.+++++++.. ++.+++++|+++|++++.+  |..|.||||+
T Consensus        33 ~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~Ll~~~~d~~~~--d~~g~tpL~~  109 (223)
T d1uoha_          33 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GRDEIVKALLGKGAQVNAV--NQNGCTPLHY  109 (223)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred             cCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc-cccchhHHHhccCceeEee--CCCCCchhhH
Confidence            588999999999999999999999999999888899999999999999 9999999999999999988  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++++.+++  .+|..|.|||| .|+..++.++++
T Consensus       110 A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~--~~d~~g~TpL~-~Aa~~g~~~~v~  186 (223)
T d1uoha_         110 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN--IQDTEGNTPLH-LACDEERVEEAK  186 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee--eccCCCCceec-cccccCcHHHHH
Confidence            999999999999999999999999999999999999999999999999999999  99999999999 899999999999


Q ss_pred             HhhcCCCCCCCCCCccchhccccccccchHHHH
Q 040660          163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVI  195 (487)
Q Consensus       163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (487)
                      +|++.|++.+.++..+..+++.+. .+....+.
T Consensus       187 ~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~  218 (223)
T d1uoha_         187 LLVSQGASIYIENKEEKTPLQVAK-GGLGLILK  218 (223)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHH
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHh
Confidence            999999999988877777777663 34444443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.5e-29  Score=234.24  Aligned_cols=164  Identities=21%  Similarity=0.140  Sum_probs=149.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCcccc-------------
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY-------------   70 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~-------------   70 (487)
                      |..|+||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+.. ++.+++++|++.+...+..             
T Consensus        42 ~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  120 (255)
T d1oy3d_          42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCT  120 (255)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC------------
T ss_pred             CCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhcc-CchHHHHHHHhhccchhcccchhhhhHHhhhc
Confidence            56799999999999999999999999999999999999999999999 9999999997654321110             


Q ss_pred             --------------------------------CCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccc-ccCCCCCHHHHHH
Q 040660           71 --------------------------------RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALV-LNDDCQTPLEVAR  117 (487)
Q Consensus        71 --------------------------------~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~-~d~~g~TpL~~A~  117 (487)
                                                      .+|..|.||||+|+..|+.+++++|++.+++.+. .+..|.||||+|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~  200 (255)
T d1oy3d_         121 PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV  200 (255)
T ss_dssp             -----------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             ccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccc
Confidence                                            1488899999999999999999999999999876 4678999999999


Q ss_pred             HcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660          118 AKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN  171 (487)
Q Consensus       118 ~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~  171 (487)
                      ..|+.++|++|+++|++++  .+|..|.|||| +|...++.+++++|+++|++.
T Consensus       201 ~~~~~~~v~~Ll~~gadin--~~d~~g~t~L~-~A~~~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         201 EAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPE  251 (255)
T ss_dssp             HTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCC
T ss_pred             cccHHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCCHHHHHHHHHcCCCC
Confidence            9999999999999999999  99999999999 899999999999999999974

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-28  Score=212.08  Aligned_cols=153  Identities=24%  Similarity=0.304  Sum_probs=147.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660            9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL   88 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~   88 (487)
                      ++||+||..|+.++|+.|+++|++++.+|.+|+||||+|+ . |+.+++++|+++|++++.+  +..|.++|+.++..++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~-~~~ei~~~Ll~~~a~~~~~--~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-L-GNPEIARRLLLRGANPDLK--DRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-S-SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-c-ccccccccccccccccccc--cccCcccccccccccc
Confidence            8999999999999999999999999999999999999885 6 8999999999999999998  8999999999999999


Q ss_pred             HHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCC-cccccccccCCCCHHHHHhhhcCCHHHHHHhhcC
Q 040660           89 ERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC-IFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPT  167 (487)
Q Consensus        89 ~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga-~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~  167 (487)
                      .++++.|++.+.+++..|..|.+|||+|+..++.+++++|+++++ +++  .+|..|.|||| +|+..++.+++++|+++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~--~~d~~g~TpL~-~A~~~~~~~iv~~Ll~~  155 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSLMQAN  155 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999997 666  89999999999 99999999999999988


Q ss_pred             C
Q 040660          168 G  168 (487)
Q Consensus       168 g  168 (487)
                      |
T Consensus       156 G  156 (156)
T d1ihba_         156 G  156 (156)
T ss_dssp             C
T ss_pred             C
Confidence            7

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.7e-28  Score=222.10  Aligned_cols=157  Identities=22%  Similarity=0.223  Sum_probs=150.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .++.+.+++++++..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+  |..|.||||+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~-~~~e~~~~Ll~~g~d~~~~--~~~~~t~L~~  142 (223)
T d1uoha_          66 KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK-NRHEIAVMLLEGGANPDAK--DHYEATAMHR  142 (223)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             ccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCccchh
Confidence            356778999999999999999999999999999999999999999999 9999999999999999998  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV  162 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~  162 (487)
                      |+..++.+++++|+..+.+++.+|.+|+||||+|+..|+.++|++|+++|++++  .+|.+|+|||| +|. .++.++++
T Consensus       143 a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~--~~d~~g~tpl~-~A~-~~~~~i~~  218 (223)
T d1uoha_         143 AAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY--IENKEEKTPLQ-VAK-GGLGLILK  218 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HCC-TTHHHHHH
T ss_pred             hhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHH-CCCHHHHh
Confidence            999999999999999999999999999999999999999999999999999999  99999999999 774 68999999


Q ss_pred             Hhhc
Q 040660          163 AVLP  166 (487)
Q Consensus       163 ~Ll~  166 (487)
                      +|++
T Consensus       219 ~Ll~  222 (223)
T d1uoha_         219 RMVE  222 (223)
T ss_dssp             HHHC
T ss_pred             cccC
Confidence            9985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=2.1e-27  Score=227.16  Aligned_cols=180  Identities=23%  Similarity=0.266  Sum_probs=164.1

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      ++.++.|+||+||+.|+.++|++||++|+++|.+|.+|.||||+|+.. |+.+++++|+++|++.+..  +..+.||||+
T Consensus        36 ~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~-g~~eiv~~Ll~~~~~~~~~--~~~~~~~L~~  112 (291)
T d1s70b_          36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHA  112 (291)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhc-CCceeeeeecccccccccc--cccccccccc
Confidence            455678999999999999999999999999999999999999999999 9999999999999999887  8899999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCccc----------------------------------------------------------
Q 040660           83 AAKRGLERTVKLLLSYGANALV----------------------------------------------------------  104 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~----------------------------------------------------------  104 (487)
                      ++..|+.++++.|+++|+..+.                                                          
T Consensus       113 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (291)
T d1s70b_         113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND  192 (291)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             cccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccccccc
Confidence            9999999999999988765433                                                          


Q ss_pred             --ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhc
Q 040660          105 --LNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAI  182 (487)
Q Consensus       105 --~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~  182 (487)
                        .+..|.||||+|+..|+.+++++|+++|++++  .++..|.|||| +|+..++.+++++|+++|++++.++..+..++
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din--~~~~~g~TpL~-~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL  269 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAF  269 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccceeccc--ccccCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence              34466788999999999999999999999998  89999999999 89999999999999999999999988888888


Q ss_pred             cccccc
Q 040660          183 YPSLLD  188 (487)
Q Consensus       183 ~~~~~~  188 (487)
                      ..+.++
T Consensus       270 ~~A~e~  275 (291)
T d1s70b_         270 DVADED  275 (291)
T ss_dssp             TSCCSG
T ss_pred             HHHHHH
Confidence            877654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=7.5e-28  Score=208.94  Aligned_cols=151  Identities=25%  Similarity=0.294  Sum_probs=142.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC
Q 040660            9 ELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG   87 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g   87 (487)
                      +.|+.||..|+.++|+.||+. +++++.+|..|+||||+|+ . |+.+++++|++.+.+++..  +..|.+||++++..+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~-~~~~~v~~Ll~~~~~~~~~--~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-F-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-T-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-c-ccccccccccccccccccc--ccccccccccccccc
Confidence            449999999999999999986 7899999999999999986 4 6789999999999999998  889999999999999


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcC
Q 040660           88 LERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPT  167 (487)
Q Consensus        88 ~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~  167 (487)
                      +.+++++++++|++++.+|.+|+||||+|+..|+.+++++|+ .|++++  .+|..|+|||| +|...++.+++++|+++
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH--RRDARGLTPLE-LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT--CCCTTSCCHHH-HHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-cccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhh
Confidence            999999999999999999999999999999999999999888 688998  99999999999 99999999999999875

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=4.6e-28  Score=229.76  Aligned_cols=189  Identities=17%  Similarity=0.108  Sum_probs=157.4

Q ss_pred             CCchHHHHHHHHcCCHHHHHHH--------HHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCC
Q 040660            5 QSKEELLYQQVNYGNVEGIKAL--------CRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG   76 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~L--------l~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g   76 (487)
                      ++|+||||+||..|+.++|+.|        ++.|+++|.+|.+|+||||+|+.. |+.+++++|+++|++++.+  |.+|
T Consensus        31 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~-g~~~iv~~Ll~~Gad~n~~--~~~g  107 (277)
T d2fo1e1          31 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGADPTIY--NKSE  107 (277)
T ss_dssp             SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTC
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccc-ccccccccccccccccccc--cccc
Confidence            5699999999999999988776        567999999999999999999999 9999999999999999998  8889


Q ss_pred             CcHHHHHHHhCCHHHHHHHHHcC-----------------------------------------------CCcccccCCC
Q 040660           77 GTPLHHAAKRGLERTVKLLLSYG-----------------------------------------------ANALVLNDDC  109 (487)
Q Consensus        77 ~TpLh~Aa~~g~~~~v~~Ll~~g-----------------------------------------------a~~~~~d~~g  109 (487)
                      .||||+|+..++.+++++++..+                                               ...+..+..|
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            99999999999888877775431                                               1122345567


Q ss_pred             CCHHHHHHHcCCHHHHHHHH-hCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccc
Q 040660          110 QTPLEVARAKGFTNVVRAIE-NHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLD  188 (487)
Q Consensus       110 ~TpL~~A~~~g~~~~v~~Ll-~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~  188 (487)
                      +|+||+++..++.+++++++ ..+.+.+  .+|..|.|||| +|+..++.+++++|+++|++++.++..+..+++.+.+.
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~  264 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTPIM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN  264 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHT
T ss_pred             CCcccccccccccccccccccccccccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHc
Confidence            88888888888888887644 5666766  78888888888 78888888888888888888888888888888888887


Q ss_pred             cchHHHHHHHh
Q 040660          189 ARPRMVIALWK  199 (487)
Q Consensus       189 ~~~~~~~~l~~  199 (487)
                      +....+..|.+
T Consensus       265 ~~~~iv~lL~~  275 (277)
T d2fo1e1         265 NHHNIVDIFDR  275 (277)
T ss_dssp             TCHHHHHHHHT
T ss_pred             CCHHHHHHHHH
Confidence            77777776654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.9e-27  Score=203.30  Aligned_cols=151  Identities=21%  Similarity=0.237  Sum_probs=144.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660            7 KEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR   86 (487)
Q Consensus         7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~   86 (487)
                      ..||||.||+.|+.++|++||++|++++ .|..|+||||+|+.. ++.++++.++.........  +..+.+++++++..
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   77 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAASE   77 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHH
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccc-ccccccccccccccccccc--cccccccccccccc
Confidence            4599999999999999999999999987 699999999999999 9999999999998877766  78899999999999


Q ss_pred             CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660           87 GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV  164 (487)
Q Consensus        87 g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L  164 (487)
                      .+.+++++|+..|++++.+|.+|+||||+|+..|+.++|++|+++|++++  .+|.+|.|||| +|+..++.+++++|
T Consensus        78 ~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~--~~d~~g~Tpl~-~A~~~g~~eiv~lL  152 (153)
T d1awcb_          78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             ccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCc--ccCCCCCCHHH-HHHHcCCHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999  99999999999 99999999999977

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-27  Score=218.52  Aligned_cols=193  Identities=20%  Similarity=0.187  Sum_probs=166.7

Q ss_pred             CchHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660            6 SKEELLYQQVNYGNV----EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      +|+||||+|+..|+.    +++++++..|+++|.+|.+|+||||+|+.. |+.+++++|+++|++++.+  |..|.||||
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~-~~~~iv~~L~~~g~d~~~~--d~~g~t~l~   77 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRGNTPLH   77 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTCCCHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccc-ccccccccccccccccccc--ccccccccc
Confidence            699999999999996    455566678999999999999999999999 9999999999999999998  999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCc------ccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhc
Q 040660           82 HAAKRGLERTVKLLLSYGANA------LVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL  155 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~------~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~  155 (487)
                      +++..|+.++++.|+..+.+.      ......|.||||+|+..++.+++++|+..|+.++ ...+.+|.|||| .|+..
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~-~~~~~~G~T~L~-~A~~~  155 (221)
T d1iknd_          78 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALH-LAVDL  155 (221)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHH-HHHHT
T ss_pred             cccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccc-cccccCCCCccc-ccccc
Confidence            999999999999999986542      3345578999999999999999999999999887 134467999999 99999


Q ss_pred             CCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhcccC
Q 040660          156 LSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLE  203 (487)
Q Consensus       156 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  203 (487)
                      ++.+++++|+++|++.+.++..+..++..+...+...++..+.....+
T Consensus       156 g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         156 QNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999999998999999999988888888877665433

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.5e-27  Score=221.51  Aligned_cols=166  Identities=25%  Similarity=0.292  Sum_probs=141.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-------------
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-------------   71 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-------------   71 (487)
                      +++|+||+|++.|+.++|++||++|+++|.++ ..|+||||+|+.. |+.+++++|++.+.+.+...             
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~-~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHc-CCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            46899999999999999999999999999876 4799999999999 99999999999887654331             


Q ss_pred             -------------------------------------------------------------CCCCCCcHHHHHHHhCCHH
Q 040660           72 -------------------------------------------------------------PGRHGGTPLHHAAKRGLER   90 (487)
Q Consensus        72 -------------------------------------------------------------~d~~g~TpLh~Aa~~g~~~   90 (487)
                                                                                   .+..|.||||+|++.|+.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                                                                         3566999999999999877


Q ss_pred             HHHHHHH--------------------------------------cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHh-C
Q 040660           91 TVKLLLS--------------------------------------YGANALVLNDDCQTPLEVARAKGFTNVVRAIEN-H  131 (487)
Q Consensus        91 ~v~~Ll~--------------------------------------~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~  131 (487)
                      ++++|++                                      +|++++.+|..|.||||+|+..|+.++|++|++ .
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            7777664                                      355666777888999999999999999998887 4


Q ss_pred             CCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCC
Q 040660          132 ICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKP  175 (487)
Q Consensus       132 ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~  175 (487)
                      |++++  .+|.+|.|||| +|+..++.+++++|+++|++++.++
T Consensus       243 g~din--~~d~~G~TpL~-~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         243 HIEIN--DTDSDGKTALL-LAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCCc--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCccc
Confidence            78888  88888999999 8888889999999999999887776

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.3e-27  Score=214.95  Aligned_cols=180  Identities=21%  Similarity=0.215  Sum_probs=152.4

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHH
Q 040660            5 QSKEELLYQQVNYGNVEGIKALCR----DGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPL   80 (487)
Q Consensus         5 ~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL   80 (487)
                      ++|+||||+||..|+.++|+.|++    .|+++|.+|..|+||||+|+.. |+.+++++|+++|++++..  +..|.+++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~-~~~~iv~~Ll~~ga~~~~~--~~~~~~~~   77 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHGQTAA   77 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcc-ccccccccccccccccccc--cccccccc
Confidence            479999999999999999998875    7999999999999999999999 9999999999999999987  77788888


Q ss_pred             HHHHHhCCHHHHHHHHHc-------------------------------------CCCc-ccccCCCCCHHHHHHHcCCH
Q 040660           81 HHAAKRGLERTVKLLLSY-------------------------------------GANA-LVLNDDCQTPLEVARAKGFT  122 (487)
Q Consensus        81 h~Aa~~g~~~~v~~Ll~~-------------------------------------ga~~-~~~d~~g~TpL~~A~~~g~~  122 (487)
                      +.|...++.++++.+...                                     ..+. ...+..|.++|+.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            888887777776666543                                     1121 12345688999999999999


Q ss_pred             HHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccc
Q 040660          123 NVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDAR  190 (487)
Q Consensus       123 ~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~  190 (487)
                      .+++.++++|...+  .+|..|.|||| +|+..++.+++++|+++|++++.++..+..+++.+.+.+.
T Consensus       158 ~~~~~~~~~~~~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~  222 (228)
T d1k1aa_         158 SMVQLLLQHGANVN--AQMYSGSSALH-SASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV  222 (228)
T ss_dssp             HHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHH
T ss_pred             hhhhhhhhhccccc--cccccCcchHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCC
Confidence            99999999998888  88889999999 8888889999999999999988888888888887775443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.8e-26  Score=212.66  Aligned_cols=176  Identities=18%  Similarity=0.059  Sum_probs=135.8

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC---------------
Q 040660            8 EELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR---------------   71 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~---------------   71 (487)
                      ++|||+||+.|+.++|+.||+. +.+++.+|.+|+||||+|+.. |+.+++++||++|++++..+               
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHc-CCccccchhhhhhcccccccccccccccccccccc
Confidence            4789999999999999888875 577888899999999999999 89999999999988877542               


Q ss_pred             ---------------------CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 040660           72 ---------------------PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN  130 (487)
Q Consensus        72 ---------------------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~  130 (487)
                                           .+..+.|+|++++..++.+++++|++.|.+.+.+|..|+||||+|+..|+.+++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence                                 23445566666666666777777777777777777888888888888888888888887


Q ss_pred             CC-CcccccccccCCCCHHHHHhhhcCCHHHHHHhhc-CCCCCCCCCCccchhcccccc
Q 040660          131 HI-CIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLP-TGSRNPTKPFKLELAIYPSLL  187 (487)
Q Consensus       131 ~g-a~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~  187 (487)
                      ++ .+++  .+|..|.|||| +|+..++.+++++|++ .|++.+.++..+..++..+..
T Consensus       160 ~~~~~in--~~d~~g~TpLh-~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         160 LGKSAVN--WQDKQGWTPLF-HALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             TTCCCSC--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC
T ss_pred             ccccccc--ccccccCCchh-hhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh
Confidence            76 4556  77778888888 7777888888888875 477777777666666666553

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-27  Score=196.59  Aligned_cols=121  Identities=26%  Similarity=0.327  Sum_probs=113.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCC-cHHHHHH
Q 040660            6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG-TPLHHAA   84 (487)
Q Consensus         6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~-TpLh~Aa   84 (487)
                      .+.++||+|++.|+.++|++||++|+++|.+|..|.||||+|+ . |+.+++++|+++|++++.+  |..|. ||||+|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~-g~~~~v~~Ll~~ga~~~~~--~~~~~~~~L~~A~   77 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRPVHDAA   77 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-c-ccccccccccccccccccc--ccccccccccccc
Confidence            4568999999999999999999999999999999999999764 6 8999999999999999998  67665 6999999


Q ss_pred             HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 040660           85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN  130 (487)
Q Consensus        85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~  130 (487)
                      +.|+.+++++|+++|++++.+|.+|+||||+|+.+|+.++|++|+.
T Consensus        78 ~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          78 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999974

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=4.4e-26  Score=206.94  Aligned_cols=157  Identities=24%  Similarity=0.274  Sum_probs=144.5

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhC--------------------------------
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMN--------------------------------   50 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~--------------------------------   50 (487)
                      .|++|+||||+||+.|+.++|++|++.|++++.++..+.++++.++..                                
T Consensus        19 ~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (209)
T d1ot8a_          19 MDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAA   98 (209)
T ss_dssp             HHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            367899999999999999999999999999999999999999988765                                


Q ss_pred             -CCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 040660           51 -PGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE  129 (487)
Q Consensus        51 -~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  129 (487)
                       .....+.+.|+..+++++..  +..|.||||+++..|..++++.|++.+.+++..|.+|.||||+|+.+|+.++|++|+
T Consensus        99 ~~~~~~~~~~L~~~~~~~~~~--~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll  176 (209)
T d1ot8a_          99 RLAIEGMVEDLITADADINAA--DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL  176 (209)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCB--CTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             cccchhhhhhhhhhccccccc--CCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHH
Confidence             13345677778888888887  899999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660          130 NHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV  164 (487)
Q Consensus       130 ~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L  164 (487)
                      ++|++++  .+|..|.|||| +|+..++.+++++|
T Consensus       177 ~~gad~n--~~d~~g~Tpl~-~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         177 DNFANRE--ITDHMDRLPRD-VASERLHHDIVRLL  208 (209)
T ss_dssp             HTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred             HCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHhhc
Confidence            9999999  99999999999 99999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.7e-26  Score=210.74  Aligned_cols=164  Identities=21%  Similarity=0.133  Sum_probs=150.2

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCcccc----CCCCCCCc
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY----RPGRHGGT   78 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~----~~d~~g~T   78 (487)
                      .|++|+||||+|+..|+.+++++|+++|++++.+|..|.||||+++.. ++.++++.|+..+......    .....|.|
T Consensus        35 ~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t  113 (221)
T d1iknd_          35 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKATNYNGHT  113 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCC
T ss_pred             CCCCCCcccccccccccccccccccccccccccccccccccccccccc-ccccccchhhhhcccccccccccccccccch
Confidence            377899999999999999999999999999999999999999999999 9999999999987543222    12566899


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCC
Q 040660           79 PLHHAAKRGLERTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLS  157 (487)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~  157 (487)
                      |||+|+..|+.+++++|+..|++++..+ .+|+||||+|+..|+.++|++|+++|++++  .+|..|+|||| +|...++
T Consensus       114 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~--~~~~~G~tpl~-~A~~~~~  190 (221)
T d1iknd_         114 CLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-LTWGRPS  190 (221)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-GCTTSSC
T ss_pred             hhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccc--ccCCCCCCHHH-HHHHCCC
Confidence            9999999999999999999999988765 579999999999999999999999999999  99999999999 8999999


Q ss_pred             HHHHHHhhcCCCC
Q 040660          158 RKVWVAVLPTGSR  170 (487)
Q Consensus       158 ~~~~~~Ll~~g~~  170 (487)
                      .+++++|++.+.+
T Consensus       191 ~~~~~~l~~~~~~  203 (221)
T d1iknd_         191 TRIQQQLGQLTLE  203 (221)
T ss_dssp             HHHHHHHHTTSCG
T ss_pred             HHHHHHHHHcCCc
Confidence            9999999988765

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=7.5e-26  Score=208.42  Aligned_cols=159  Identities=24%  Similarity=0.227  Sum_probs=139.7

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCc---cCCCCChHHHHHH-------------------------------
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEW---IDKEGKTPLIAAC-------------------------------   48 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~---~d~~G~TpL~~A~-------------------------------   48 (487)
                      .|.+|+||||+|+..|+.++|++||++|++++.   .+..|.+++|+++                               
T Consensus        30 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  109 (229)
T d1ixva_          30 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL  109 (229)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            578999999999999999999999999998764   3445556666554                               


Q ss_pred             ----hCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCcccccCCCCCHHHHHHHcCCHH
Q 040660           49 ----MNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG-ANALVLNDDCQTPLEVARAKGFTN  123 (487)
Q Consensus        49 ----~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~~g~~~  123 (487)
                          .. ++.+++++|+..|.+.+..  |..|+||||+|+..|+.+++++|++.+ .+++.+|.+|+||||+|+.+|+.+
T Consensus       110 ~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~  186 (229)
T d1ixva_         110 HLAVGK-KWFEVSQFLIENGASVRIK--DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD  186 (229)
T ss_dssp             HHHHHT-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred             cccccc-chhhhhhhhhhhccccccc--CCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHH
Confidence                44 6778888888888888877  899999999999999999999999987 688999999999999999999999


Q ss_pred             HHHHHHh-CCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCC
Q 040660          124 VVRAIEN-HICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSR  170 (487)
Q Consensus       124 ~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~  170 (487)
                      +|++|++ +|++++  .+|..|+|||| +|.   +.+++++|+++|++
T Consensus       187 ~v~~Ll~~~gad~~--~~d~~g~t~l~-~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         187 AAVLLVEKYGAEYD--LVDNKGAKAED-VAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HHHHHHHHHCCCSC--CCCTTSCCTGG-GCS---CHHHHHHHHHHCCC
T ss_pred             HHHHHHHhcCCCCC--CcCCCCCCHHH-HHh---hHHHHHHHHHcCCC
Confidence            9999996 599999  99999999999 665   46899999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2.8e-27  Score=195.17  Aligned_cols=106  Identities=29%  Similarity=0.384  Sum_probs=77.5

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC
Q 040660            8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG   87 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g   87 (487)
                      +|||++|++.|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+  |..|+||||+|+..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~-~~~~~~~~ll~~g~din~~--d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHH-STTTHHHHHHHSSCTTTCC--SSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccc-cccccccccccccceeeec--ccccccchhhhhhcC
Confidence            4677777777777777777777777777777777777777777 7777777777777777766  667777777777777


Q ss_pred             CHHHHHHHHHcCCCcccccCCCCCHHHHH
Q 040660           88 LERTVKLLLSYGANALVLNDDCQTPLEVA  116 (487)
Q Consensus        88 ~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A  116 (487)
                      +.+++++|+++|+|++.+|.+|+||||+|
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            77777777777777777777777777766

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.9e-26  Score=190.99  Aligned_cols=121  Identities=25%  Similarity=0.324  Sum_probs=108.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660            9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL   88 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~   88 (487)
                      ++||.|+..|+.++|++|+++|+++|.+|.+|+||||+|+.. |+.+++++|+++|++++..  |.+|+||||+|+..|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~-~~~~~~~~ll~~g~~~~~~--d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccc-ccccccccccccccccccc--cccCcccccccchhhH
Confidence            689999999999999999999999999999999999999999 9999999999999999987  8999999999999999


Q ss_pred             HHHHHHHHHcCCCcccccC-CCCCHHHHH--HHcCCHHHHHHHHhCC
Q 040660           89 ERTVKLLLSYGANALVLND-DCQTPLEVA--RAKGFTNVVRAIENHI  132 (487)
Q Consensus        89 ~~~v~~Ll~~ga~~~~~d~-~g~TpL~~A--~~~g~~~~v~~Ll~~g  132 (487)
                      .++|++|+++|++++..+. +|+|+++++  ...|+.++|++|++.+
T Consensus        80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            9999999999999998764 588887765  5678899999998654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=217.92  Aligned_cols=185  Identities=25%  Similarity=0.226  Sum_probs=165.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC
Q 040660            8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG   87 (487)
Q Consensus         8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g   87 (487)
                      .||||+||..|+.++|++||++|+++|.+|..|.||||+|+.. |+.+++++||++|++++.+  |.+|.||||+|+..|
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~gadi~~~--~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDDQTPLHCAARIG   77 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTSCCHHHHHHHHT
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHHHcC
Confidence            3899999999999999999999999999999999999999999 9999999999999999998  999999999999999


Q ss_pred             CHHHHHHHHHcCC---------------------------------CcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660           88 LERTVKLLLSYGA---------------------------------NALVLNDDCQTPLEVARAKGFTNVVRAIENHICI  134 (487)
Q Consensus        88 ~~~~v~~Ll~~ga---------------------------------~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  134 (487)
                      +.+++++|+..+.                                 ..+..+.++.++|+.|+..++.+++++|+++|++
T Consensus        78 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~  157 (408)
T d1n11a_          78 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH  157 (408)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999987543                                 3345677899999999999999999999999999


Q ss_pred             ccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660          135 FSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW  198 (487)
Q Consensus       135 ~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (487)
                      ++  ..+..|.+||| .|...++.+++++|+.+|++.+..+..+...++.............+.
T Consensus       158 ~~--~~~~~~~~~L~-~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~  218 (408)
T d1n11a_         158 PN--AAGKNGLTPLH-VAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL  218 (408)
T ss_dssp             TT--CCCSSCCCHHH-HHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             CC--cCCCcCchHHH-HHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhh
Confidence            98  89999999999 899999999999999999998877766666666665555555555443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=2.4e-25  Score=212.72  Aligned_cols=156  Identities=29%  Similarity=0.357  Sum_probs=142.9

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----------
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-----------   71 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-----------   71 (487)
                      .|++|.||||+|+..|+.++|++|+++|.+.+..+..+.|||++++.. ++.++++.|+++|+..+..+           
T Consensus        69 ~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~  147 (291)
T d1s70b_          69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNSEGDTPLDIAE  147 (291)
T ss_dssp             BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             cCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc-cccchhhcccccCcccccccccCcccccccc
Confidence            478899999999999999999999999999999999999999999999 99999999999987765442           


Q ss_pred             -----------------------------------------------CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccc
Q 040660           72 -----------------------------------------------PGRHGGTPLHHAAKRGLERTVKLLLSYGANALV  104 (487)
Q Consensus        72 -----------------------------------------------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~  104 (487)
                                                                     .+..|.||||+|+..|+.+++++|++.|++++.
T Consensus       148 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~  227 (291)
T d1s70b_         148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI  227 (291)
T ss_dssp             SHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             ccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccc
Confidence                                                           467899999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhc
Q 040660          105 LNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLP  166 (487)
Q Consensus       105 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~  166 (487)
                      +|.+|+||||+|+..|+.++|++|+++|++++  .+|..|.|||| +|+.    +++++|.+
T Consensus       228 ~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~--~~d~~G~TaL~-~A~e----~~~~~L~~  282 (291)
T d1s70b_         228 KDYDGWTPLHAAAHWGKEEACRILVENLCDME--AVNKVGQTAFD-VADE----DILGYLEE  282 (291)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTTT-SCCS----GGGHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHH----HHHHHHHH
Confidence            99999999999999999999999999999999  99999999999 6753    56666654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=7.1e-26  Score=214.47  Aligned_cols=206  Identities=19%  Similarity=0.146  Sum_probs=164.7

Q ss_pred             hHHHHHHHH-cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHH--------HHcCCCccccCCCCCCCc
Q 040660            8 EELLYQQVN-YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL--------IELGAKVDAYRPGRHGGT   78 (487)
Q Consensus         8 ~t~L~~Aa~-~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~L--------l~~ga~~~~~~~d~~g~T   78 (487)
                      +||||+++. .|..++++.|.+.++++.. +.+|+||||+||.. |+.++|++|        ++.|+|+|.+  |.+|+|
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~-g~~~~v~~Ll~~~~~~~l~~Gadvn~~--d~~G~T   76 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASN-SSAEKSEDLIVHEAKECIAAGADVNAM--DCDENT   76 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCT-TCCSCCTTHHHHHHHHHHHTCCCTTCC--CTTSCC
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHc-CCHHHHHHHHhcchhHHHHcCCCcccc--CCCCCe
Confidence            468886664 4777777777777766532 24699999999999 999988776        5679999998  999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc---cc-------------------
Q 040660           79 PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI---FS-------------------  136 (487)
Q Consensus        79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~---~~-------------------  136 (487)
                      |||+|+..|+.++|++|+++|+|++.+|.+|.|||++|...++.++++++...+..   ++                   
T Consensus        77 pLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (277)
T d2fo1e1          77 PLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGR  156 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCST
T ss_pred             eeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999988744210   00                   


Q ss_pred             -----------------------ccccccCCCCHHHHHhhhcCCHHHHHH-hhcCCCCCCCCCCccchhccccccccchH
Q 040660          137 -----------------------GWLRELYGPGFLELLAPQLLSRKVWVA-VLPTGSRNPTKPFKLELAIYPSLLDARPR  192 (487)
Q Consensus       137 -----------------------~~~~d~~G~t~L~~~a~~~~~~~~~~~-Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~  192 (487)
                                             ....+..|.|+|| .+...++.+++.+ +...+.+...++..+...++.+...+...
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~-~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~  235 (277)
T d2fo1e1         157 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE  235 (277)
T ss_dssp             THHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cccccccccccccccccccccccccccccCCCCccc-cccccccccccccccccccccccccCCCCCCHHHHHHHcCCHH
Confidence                                   0134457899999 7888888888876 55678888878878888888888888888


Q ss_pred             HHHHHH--hcccCCCCCCCCCCceeeec
Q 040660          193 MVIALW--KANLEEPKFQHSDPSVTIVD  218 (487)
Q Consensus       193 ~~~~l~--~~~~~~~~~~~~~~~~~i~~  218 (487)
                      .+..|.  +++++..+..+.+++.+...
T Consensus       236 iv~~Ll~~gadin~~d~~G~T~L~~A~~  263 (277)
T d2fo1e1         236 VVMYLIQQGASVEAVDATDHTARQLAQA  263 (277)
T ss_dssp             HHHHHHHTTCCSSCCCSSSCCHHHHHHH
T ss_pred             HHHHHHHCcCCCCCcCCCCCCHHHHHHH
Confidence            888776  44566667777777776554

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.1e-24  Score=215.84  Aligned_cols=155  Identities=28%  Similarity=0.226  Sum_probs=135.5

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA   83 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A   83 (487)
                      +..|.|+||+|+..++.++++.++..+..++..|..|.|||++|+.. ++.+++++|+++|++++..  +..+.||||++
T Consensus       228 ~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~-~~~~i~~~Ll~~g~~~~~~--~~~~~t~L~~~  304 (408)
T d1n11a_         228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLIKHGVMVDAT--TRMGYTPLHVA  304 (408)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CSSCCCHHHHH
T ss_pred             CCCCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhc-CcHHHHHHHHHCCCccccc--cccccccchhh
Confidence            45678888999988999988888888888888888888999999988 8889999999888888887  77888999999


Q ss_pred             HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660           84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVA  163 (487)
Q Consensus        84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~  163 (487)
                      +..++.+++++|++.|++++.+|.+|+||||+|+++|+.++|++|+++|++++  .+|.+|.|||| +|...++.+++++
T Consensus       305 ~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n--~~d~~G~t~L~-~A~~~~~~~iv~~  381 (408)
T d1n11a_         305 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN--EVSSDGTTPLA-IAKRLGYISVTDV  381 (408)
T ss_dssp             HHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCSSSCCHHH-HHHHTTCHHHHHH
T ss_pred             cccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHH
Confidence            99998889999999999988888889999999999999999999999999888  88888999998 8888888888765


Q ss_pred             h
Q 040660          164 V  164 (487)
Q Consensus       164 L  164 (487)
                      |
T Consensus       382 L  382 (408)
T d1n11a_         382 L  382 (408)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.2e-25  Score=185.35  Aligned_cols=106  Identities=25%  Similarity=0.251  Sum_probs=103.1

Q ss_pred             ChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC
Q 040660           41 KTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG  120 (487)
Q Consensus        41 ~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g  120 (487)
                      .|||+||++. |+.++|++|+++|++++.+  |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|
T Consensus         3 ~tpL~~A~~~-g~~~~v~~Ll~~g~d~n~~--~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~   79 (118)
T d1myoa_           3 DKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG   79 (118)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHTTTCCCCCC--SSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTT
T ss_pred             ChHHHHHHHC-CCHHHHHHHHHhhhccccc--cccccccccccccccccccccccccccceeeecccccccchhhhhhcC
Confidence            3899999999 9999999999999999998  899999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCCCcccccccccCCCCHHHHHh
Q 040660          121 FTNVVRAIENHICIFSGWLRELYGPGFLELLA  152 (487)
Q Consensus       121 ~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a  152 (487)
                      +.++|++|+++|++++  .+|..|.|||| +|
T Consensus        80 ~~~~v~~Ll~~Gad~~--~~d~~G~t~l~-~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKT--VKGPDGLTALE-AT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSS--SSSSSTCCCCC-TC
T ss_pred             chhhhhhhhcccccce--eeCCCCCCHHH-HH
Confidence            9999999999999999  99999999999 66

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=1.8e-24  Score=208.28  Aligned_cols=142  Identities=15%  Similarity=0.087  Sum_probs=117.7

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcH-------HHHHHHHHcCCCccccCCCCC
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLY-------DVAKTLIELGAKVDAYRPGRH   75 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~-------~~v~~Ll~~ga~~~~~~~d~~   75 (487)
                      +|++|+||||+||..|+.++|++||++|++++.+|..|+||||+||.. ++.       +++++|.   ..++.+  |..
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~~~~~~~~ll~~l~---~~~~~~--d~~  176 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLY---PCLILE--DSM  176 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHG---GGGGEE--CTT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhc-ccchhhhhHHHHHHHHh---hhhhhc--ccc
Confidence            588999999999999999999999999999999999999999999987 542       3444443   345665  889


Q ss_pred             CCcHHHHHHHhCC----HH--------HHHHHHHcCC-------------------------------------Cccccc
Q 040660           76 GGTPLHHAAKRGL----ER--------TVKLLLSYGA-------------------------------------NALVLN  106 (487)
Q Consensus        76 g~TpLh~Aa~~g~----~~--------~v~~Ll~~ga-------------------------------------~~~~~d  106 (487)
                      |+||||+++..+.    ..        ++.+++..+.                                     .+|.+|
T Consensus       177 g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D  256 (301)
T d1sw6a_         177 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQD  256 (301)
T ss_dssp             CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCC
T ss_pred             cCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCC
Confidence            9999999987554    22        3334444332                                     267889


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhh
Q 040660          107 DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAP  153 (487)
Q Consensus       107 ~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~  153 (487)
                      .+|+||||+|+++|+.++|++|+++|++++  .+|..|.|||+ +|+
T Consensus       257 ~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~--~~n~~G~Tpl~-~A~  300 (301)
T d1sw6a_         257 SNGDTCLNIAARLGNISIVDALLDYGADPF--IANKSGLRPVD-FGA  300 (301)
T ss_dssp             TTSCCHHHHHHHHCCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HcC
Confidence            999999999999999999999999999999  99999999999 553

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=3.5e-26  Score=224.67  Aligned_cols=191  Identities=15%  Similarity=0.070  Sum_probs=148.6

Q ss_pred             CCCchHHHHHHHHcCCHHHHHH---HHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKA---LCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPL   80 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~---Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL   80 (487)
                      +..|.|+||+|+++|+.++++.   |++.|+++|.+|.+|+||||+||.. |+.++|++|++.|++++..+.+.+|.|||
T Consensus        87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~-G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          87 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             cCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCccccccccCCCChh
Confidence            4578999999999999877765   7889999999999999999999999 99999999999999998873345699999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCc---ccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccccc---------------
Q 040660           81 HHAAKRGLERTVKLLLSYGANA---LVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLREL---------------  142 (487)
Q Consensus        81 h~Aa~~g~~~~v~~Ll~~ga~~---~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~---------------  142 (487)
                      |+|+..|+.++|++|++.|++.   +..+.+|.||||.|+.+||.++|++|+++|++++  ..+.               
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~~~  243 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA--YAEIHEFEYGEKYVNPFIA  243 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH--HHHHCTTTTTTTTHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc--hHHHHHHHcCcHhhhHHHH
Confidence            9999999999999999999765   3445667888999999999999999999987654  1110               


Q ss_pred             ----------------------------------CCCCHHHHHhhhcCCHHHHHHhhcCCCCCC-----CCCCccchhcc
Q 040660          143 ----------------------------------YGPGFLELLAPQLLSRKVWVAVLPTGSRNP-----TKPFKLELAIY  183 (487)
Q Consensus       143 ----------------------------------~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~-----~~~~~~~~~~~  183 (487)
                                                        .+.++|+ .+...+..+++++|+..+....     ..+..++.++.
T Consensus       244 ~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~-~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh  322 (346)
T d2ajaa1         244 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLI-RRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR  322 (346)
T ss_dssp             HHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHH-HHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred             HhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHH-HHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH
Confidence                                              1124555 5566677888999998776432     22234567777


Q ss_pred             ccccccchHHHHHHH
Q 040660          184 PSLLDARPRMVIALW  198 (487)
Q Consensus       184 ~~~~~~~~~~~~~l~  198 (487)
                      .+.+.+....+..|.
T Consensus       323 lA~~~Gn~e~v~lLL  337 (346)
T d2ajaa1         323 LALRLGNQGACALLL  337 (346)
T ss_dssp             HHHHHTCTTHHHHHT
T ss_pred             HHHHcCcHHHHHHHh
Confidence            777777776666554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=7.3e-24  Score=182.58  Aligned_cols=124  Identities=20%  Similarity=0.242  Sum_probs=114.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCCcc------CCCCChHHHHHHhC--CCcHHHHHHHHHcCCCccccCCCCCCCcHH
Q 040660            9 ELLYQQVNYGNVEGIKALCRDGAGLEWI------DKEGKTPLIAACMN--PGLYDVAKTLIELGAKVDAYRPGRHGGTPL   80 (487)
Q Consensus         9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~------d~~G~TpL~~A~~~--~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpL   80 (487)
                      ..|+.|++.+++..+..++..|++++..      +..|+||||+|+..  .++.+++++|+++|++++.+  |..|+|||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~--d~~g~TpL   85 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTAL   85 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhh--hhhhcccc
Confidence            4567889999999999999999887654      67899999999974  26789999999999999998  99999999


Q ss_pred             HHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660           81 HHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI  134 (487)
Q Consensus        81 h~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~  134 (487)
                      |+|+..|+.+++++|+++|++++.+|.+|+||||+|+++|+.+++++|++.++.
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999999999999998765

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.5e-24  Score=180.52  Aligned_cols=120  Identities=23%  Similarity=0.293  Sum_probs=113.8

Q ss_pred             CChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCC-CHHHHHHH
Q 040660           40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQ-TPLEVARA  118 (487)
Q Consensus        40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpL~~A~~  118 (487)
                      +.++||+|+.. |+++++++|+++|+++|.+  |..|.||||+|+ .|+.+++++|+++|++++.+|..|. ||||+|+.
T Consensus         3 ~~~~L~~Aa~~-G~~~~v~~Ll~~gad~n~~--~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHC-CCHHHHHHHHHcCCccccc--cccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            56899999999 9999999999999999998  999999999775 7999999999999999999998876 69999999


Q ss_pred             cCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhc
Q 040660          119 KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLP  166 (487)
Q Consensus       119 ~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~  166 (487)
                      .|+.++|++|+++|++++  .+|..|.|||| +|...++.+++++|+.
T Consensus        79 ~g~~~~v~~Ll~~ga~~~--~~d~~G~T~l~-~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccc--cccCCCCCHHH-HHHHcCCHHHHHHHHh
Confidence            999999999999999999  99999999999 8999999999999985

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=9.3e-24  Score=182.74  Aligned_cols=125  Identities=26%  Similarity=0.378  Sum_probs=118.9

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|+||||+|+. |+.+++++||+++.+++..+..|.+||++++.. ++.+++++++++|++++.+  |..|.||||+
T Consensus        32 ~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l~~~~~~n~~--~~~~~t~L~~  107 (156)
T d1bd8a_          32 LNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVP--DGTGALPIHL  107 (156)
T ss_dssp             CCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred             cCCCCCcccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccccc--cCCCCeeecc
Confidence            47889999999875 899999999999999999999999999999999 9999999999999999998  8999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI  132 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  132 (487)
                      |+..|+.+++++|+ .|++++.+|.+|+||||+|+.+|+.+++++|++|.
T Consensus       108 A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h~  156 (156)
T d1bd8a_         108 AVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGHM  156 (156)
T ss_dssp             HHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTTC
T ss_pred             cccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhhC
Confidence            99999999999887 78999999999999999999999999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.5e-24  Score=177.50  Aligned_cols=122  Identities=17%  Similarity=0.125  Sum_probs=111.7

Q ss_pred             hHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCC
Q 040660           42 TPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF  121 (487)
Q Consensus        42 TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~  121 (487)
                      +.||.|+.. |+.++|++|+++|+|+|.+  |.+|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+.+|+
T Consensus         3 ~lL~~A~~~-G~~~~v~~Ll~~g~d~n~~--d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~   79 (130)
T d1ycsb1           3 ALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNN   79 (130)
T ss_dssp             HHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             HHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccccccccccccccccccccccccccccccccccccCcccccccchhhH
Confidence            689999999 9999999999999999998  9999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCcccccccc-cCCCCHHHHH-hhhcCCHHHHHHhhcCC
Q 040660          122 TNVVRAIENHICIFSGWLRE-LYGPGFLELL-APQLLSRKVWVAVLPTG  168 (487)
Q Consensus       122 ~~~v~~Ll~~ga~~~~~~~d-~~G~t~L~~~-a~~~~~~~~~~~Ll~~g  168 (487)
                      .++|++|+++|++++  ..+ ..|.|+++++ +...++.+++++|+..+
T Consensus        80 ~~~v~~Ll~~ga~v~--~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          80 VQVCKFLVESGAAVF--AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHHTTCCTT--CCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcc--cccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999998  666 4588998732 35667899999998643

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1e-23  Score=191.07  Aligned_cols=171  Identities=25%  Similarity=0.170  Sum_probs=153.4

Q ss_pred             HHHHHHHHHcCCCCCc-cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC----------
Q 040660           20 VEGIKALCRDGAGLEW-IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL----------   88 (487)
Q Consensus        20 ~~~v~~Ll~~g~~~~~-~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~----------   88 (487)
                      .|+|++||++|+++|. .|.+|.||||+||.. |+.+++++|+..|++++.+  +..+.++++.++..++          
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~-g~~e~v~~Ll~~g~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARF-ARADAAKRLLDAGADANSQ--DNTGRTPLHAAVAADAMGVFQILLRN   78 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHc-CCHHHHHHHHhhccccccc--cccccccccccccccccccccccccc
Confidence            5899999999999997 589999999999999 9999999999999999987  7777888877776654          


Q ss_pred             ------------------------HHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCC
Q 040660           89 ------------------------ERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYG  144 (487)
Q Consensus        89 ------------------------~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G  144 (487)
                                              ....++|+..+++++.++..|+|||++++.++..++++.|++++.+++  ..|..|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~--~~d~~g  156 (209)
T d1ot8a_          79 RATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD--AQDDKD  156 (209)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTC
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccc--cccccc
Confidence                                    445677778899999999999999999999999999999999999998  999999


Q ss_pred             CCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHH
Q 040660          145 PGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIA  196 (487)
Q Consensus       145 ~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (487)
                      .|||| .|+..++.+++++|+++|++.+.++..+..+++.+.+.+....+..
T Consensus       157 ~TpL~-~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~l  207 (209)
T d1ot8a_         157 ETPLF-LAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRL  207 (209)
T ss_dssp             CCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             ccccc-hhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhh
Confidence            99999 8888999999999999999998888888888888887777766653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.5e-22  Score=173.25  Aligned_cols=126  Identities=29%  Similarity=0.315  Sum_probs=120.8

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|+.|.||||+|+ .|+.+++++|+++|++++.++..|.++|++++.. ++.++++.|++.+.+++..  |..|.++||+
T Consensus        30 ~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~~~~~l~~  105 (156)
T d1ihba_          30 QNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIE--DNEGNLPLHL  105 (156)
T ss_dssp             CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred             cCCcccccccccc-cccccccccccccccccccccccCcccccccccc-ccccccccccccccccccc--cccccccccc
Confidence            4788999999886 7999999999999999999999999999999999 9999999999999999987  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCC-CcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660           83 AAKRGLERTVKLLLSYGA-NALVLNDDCQTPLEVARAKGFTNVVRAIENHI  132 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga-~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  132 (487)
                      |+..++.+++++|+++++ +++.+|.+|+||||+|+.+++.++|++|+++|
T Consensus       106 a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         106 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999986 88999999999999999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.4e-22  Score=188.82  Aligned_cols=135  Identities=23%  Similarity=0.286  Sum_probs=123.5

Q ss_pred             CCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhC---CCcHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660            4 QQSKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMN---PGLYDVAKTLIELGAKVDAYRPGRHGGTP   79 (487)
Q Consensus         4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~---~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp   79 (487)
                      +..|.||||+|++.|+.+++++|+++ |++++..+..|.++++.+...   .+..+++++|+++|++++.+  |..|.||
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~--~~~g~t~  222 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR--GERGKTP  222 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC--CTTSCCH
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCcc--CCCCCCc
Confidence            45789999999999999999999986 899999999999988876554   24567999999999999987  8999999


Q ss_pred             HHHHHHhCCHHHHHHHHH-cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccccc
Q 040660           80 LHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLREL  142 (487)
Q Consensus        80 Lh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~  142 (487)
                      ||+|++.|+.++|++||+ .|++++.+|.+|.||||+|+++|+.++|++|+++||+++  .+|.
T Consensus       223 L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n--~~d~  284 (285)
T d1wdya_         223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD--CGDL  284 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC--CSSC
T ss_pred             cchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--cccC
Confidence            999999999999999998 489999999999999999999999999999999999998  7663

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.5e-21  Score=167.73  Aligned_cols=123  Identities=24%  Similarity=0.366  Sum_probs=118.0

Q ss_pred             CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660            3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH   82 (487)
Q Consensus         3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~   82 (487)
                      .|..|+||||+|+..++.++++.++.........+..+.+++++++.. .+.+++++|+.+|++.+.+  |.+|+||||+
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~g~T~L~~  106 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAK--DMLKMTALHW  106 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHH
T ss_pred             cccCCCcccccccccccccccccccccccccccccccccccccccccc-ccceeeecccccCCccccc--cccCchHHHh
Confidence            478899999999999999999999999888888888999999999999 9999999999999999988  9999999999


Q ss_pred             HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 040660           83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI  128 (487)
Q Consensus        83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~L  128 (487)
                      |+..|+.++|++|++.|+|++.+|.+|.||||+|+.+|+.++|++|
T Consensus       107 A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            9999999999999999999999999999999999999999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.6e-21  Score=171.79  Aligned_cols=176  Identities=22%  Similarity=0.219  Sum_probs=149.6

Q ss_pred             CCChHHHHHHhCCCcHHHHHHHHH----cCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHH
Q 040660           39 EGKTPLIAACMNPGLYDVAKTLIE----LGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLE  114 (487)
Q Consensus        39 ~G~TpL~~A~~~~g~~~~v~~Ll~----~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~  114 (487)
                      +|+||||+||.. |+.++++.|++    .|+++|.+  |..|+||||+|+..|+.+++++|+++|++++..+..|.++++
T Consensus         2 dG~TpLh~A~~~-g~~~~v~~Ll~~~~~~g~~in~~--d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           2 DGDTPLHIAVVQ-GNLPAVHRLVNLFQQGGRELDIY--NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH   78 (228)
T ss_dssp             TTCCHHHHHHHT-TCHHHHHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCcc--CCCCCccceehhcccccccccccccccccccccccccccccc
Confidence            699999999999 99999998874    79999998  999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCCCccc------------------------------------ccccccCCCCHHHHHhhhcCCH
Q 040660          115 VARAKGFTNVVRAIENHICIFS------------------------------------GWLRELYGPGFLELLAPQLLSR  158 (487)
Q Consensus       115 ~A~~~g~~~~v~~Ll~~ga~~~------------------------------------~~~~d~~G~t~L~~~a~~~~~~  158 (487)
                      .|...++.++++.+........                                    ....+..|.++|+ .+...+..
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~a~~~~~~  157 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLI-HAVENNSL  157 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHH-HHHHTTCH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHH-HHHHhhhh
Confidence            9999999888887764422110                                    0133457899999 88999999


Q ss_pred             HHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh--cccCCCCCCCCCCceeeec
Q 040660          159 KVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK--ANLEEPKFQHSDPSVTIVD  218 (487)
Q Consensus       159 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~i~~  218 (487)
                      .+++.++..|.....++..+...++.+...+....+..|..  +.++..+..+.+|+.+...
T Consensus       158 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred             hhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            99999999999998888888888888888888888877764  4566777888888876553

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=8.7e-21  Score=163.05  Aligned_cols=125  Identities=14%  Similarity=0.025  Sum_probs=112.8

Q ss_pred             HHHHHHhCCCcHHHHHHHHHcCCCcccc----CCCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCcccccCCCCCHHHH
Q 040660           43 PLIAACMNPGLYDVAKTLIELGAKVDAY----RPGRHGGTPLHHAAKR---GLERTVKLLLSYGANALVLNDDCQTPLEV  115 (487)
Q Consensus        43 pL~~A~~~~g~~~~v~~Ll~~ga~~~~~----~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~  115 (487)
                      .|+.|++. +++..+..++..|++++..    ..+..|+||||+|++.   |+.++|++|+++|++++.+|.+|+||||+
T Consensus         9 ~L~~Av~~-~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           9 SLCEAVKT-RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHT-TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHh-CCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            45677888 8999999999999887654    1267799999999985   67899999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660          116 ARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN  171 (487)
Q Consensus       116 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~  171 (487)
                      |+..|+.++|++|+++|++++  .+|..|.|||| +|...++.+++++|++.++..
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccCcccc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHhCCCC
Confidence            999999999999999999999  99999999999 899999999999999887664

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.83  E-value=3.2e-23  Score=203.32  Aligned_cols=153  Identities=12%  Similarity=0.015  Sum_probs=123.3

Q ss_pred             HcCCHHHHHHHHHcCCC-----------CCccCCCCChHHHHHHhCCCcHHHHHH---HHHcCCCccccCCCCCCCcHHH
Q 040660           16 NYGNVEGIKALCRDGAG-----------LEWIDKEGKTPLIAACMNPGLYDVAKT---LIELGAKVDAYRPGRHGGTPLH   81 (487)
Q Consensus        16 ~~g~~~~v~~Ll~~g~~-----------~~~~d~~G~TpL~~A~~~~g~~~~v~~---Ll~~ga~~~~~~~d~~g~TpLh   81 (487)
                      ..+..++++.|...+++           ++.++..|.||||+||+. |+.+++++   |++.|+++|.+  |.+|+||||
T Consensus        55 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~-g~~~~~~~~~~L~~~~~~in~~--~~~g~taL~  131 (346)
T d2ajaa1          55 TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAIT-GCSSALDTLCLLLTSDEIVKVI--QAENYQAFR  131 (346)
T ss_dssp             SSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHH-CCHHHHHHHTTC--CCSSCC----CHHHHHHHH
T ss_pred             hccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHh-CCHHHHHHHHHHHhCCCccccc--CCCCCCHHH
Confidence            34445566666554332           245677899999999999 99877665   78999999998  999999999


Q ss_pred             HHHHhCCHHHHHHHHHcCCCccccc--CCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-cccccCCCCHHHHHhhhcCCH
Q 040660           82 HAAKRGLERTVKLLLSYGANALVLN--DDCQTPLEVARAKGFTNVVRAIENHICIFSG-WLRELYGPGFLELLAPQLLSR  158 (487)
Q Consensus        82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d--~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~d~~G~t~L~~~a~~~~~~  158 (487)
                      +||+.|+.++|++|++.|++++..+  .+|+||||+|+.+||.++|++|+++|++... ...+..|.|+++ +|...++.
T Consensus       132 ~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~-~A~~~g~~  210 (346)
T d2ajaa1         132 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRW-AAVGRGHH  210 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHH-HHSTTCCH
T ss_pred             HHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhh-HHhhcCHH
Confidence            9999999999999999999998876  4699999999999999999999999987531 134456667777 89999999


Q ss_pred             HHHHHhhcCCCCCC
Q 040660          159 KVWVAVLPTGSRNP  172 (487)
Q Consensus       159 ~~~~~Ll~~g~~~~  172 (487)
                      +++++|++.|++..
T Consensus       211 ~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         211 NVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHTTSHHHHH
T ss_pred             HHHHHHHhCCCCcc
Confidence            99999999988653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=5.2e-21  Score=183.75  Aligned_cols=148  Identities=16%  Similarity=0.064  Sum_probs=119.4

Q ss_pred             cCCCCCcc-CCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCH-------HHHHHHHHcCC
Q 040660           29 DGAGLEWI-DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLE-------RTVKLLLSYGA  100 (487)
Q Consensus        29 ~g~~~~~~-d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~-------~~v~~Ll~~ga  100 (487)
                      .+.++|.. |..|+||||+||.. |+.++|++||++|++++.+  |..|+||||+|+..++.       +++++|.   .
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~-g~~~~v~~Ll~~gad~~~~--d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~  168 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSVNNYDSGTFEALLDYLY---P  168 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---G
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcC--CcccccHHHHhhhcccchhhhhHHHHHHHHh---h
Confidence            46788865 99999999999999 9999999999999999998  99999999999987752       3444443   3


Q ss_pred             CcccccCCCCCHHHHHHHcCC----HH--------HHHHHHhCCCc----------------------------------
Q 040660          101 NALVLNDDCQTPLEVARAKGF----TN--------VVRAIENHICI----------------------------------  134 (487)
Q Consensus       101 ~~~~~d~~g~TpL~~A~~~g~----~~--------~v~~Ll~~ga~----------------------------------  134 (487)
                      +++.+|..|+||||+++..+.    ..        ++.+|+..+..                                  
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH
Confidence            567789999999999886543    22        33444444332                                  


Q ss_pred             ---ccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhcccc
Q 040660          135 ---FSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPS  185 (487)
Q Consensus       135 ---~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~  185 (487)
                         ++  .+|..|+|||| +|+..++.+++++|++.|++++..+..+...+.++
T Consensus       249 ~~~in--~~D~~G~TpLh-~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A  299 (301)
T d1sw6a_         249 ANMLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFG  299 (301)
T ss_dssp             HHTTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred             hcCcc--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHc
Confidence               34  67899999999 99999999999999999999998887777666554

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.1e-12  Score=95.05  Aligned_cols=50  Identities=34%  Similarity=0.814  Sum_probs=44.2

Q ss_pred             cccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccceeEe
Q 040660          434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQVIRL  484 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~~~~  484 (487)
                      ..|.||++...+++++||||.| |..|+.+|... ...||+||..|.....|
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEE-CHHHHHHHHHTTCCSCTTTCCCCCCCCCS
T ss_pred             CCCccCCCcCCCeEEeCCCCee-eHHHHHHHHHHCcCcCCCCCcCccCCcee
Confidence            4799999999999999999999 99999999864 55799999999876544

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.17  E-value=4.1e-12  Score=91.58  Aligned_cols=49  Identities=29%  Similarity=0.787  Sum_probs=42.9

Q ss_pred             cccccccccCCce-EEcCCCCccchHhhHHHHhccCCccccccccccceeE
Q 040660          434 SSCVICLDAPVEG-ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIR  483 (487)
Q Consensus       434 ~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~  483 (487)
                      .+|+||++.+.+. +.+||||.| |..|+.+|...+..||+||++|..++.
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~F-c~~Ci~~w~~~~~~CP~CR~~i~~~~~   55 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCccCCcCccCCcEEeCCCCcC-cHHHHHHHHHhCCcCCCCCcchHhhcc
Confidence            5799999998765 458999999 999999999888899999999987654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.9e-12  Score=85.98  Aligned_cols=44  Identities=27%  Similarity=0.636  Sum_probs=38.5

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      +..+|.||++.+.+++.+||||.| |..|+.++   +..||+||++|.
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~f-C~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred             CCCCCcccCcccCCCEEecCCCHH-hHHHHHcC---CCcCcCCCCccc
Confidence            346899999999999999999999 99998765   347999999986

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=4.5e-11  Score=89.49  Aligned_cols=48  Identities=25%  Similarity=0.498  Sum_probs=42.2

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhc-cCCccccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRANISQ  480 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~  480 (487)
                      +...|+||++.+.+++.++|||.| |..|+.+|.+ +...||+||.++..
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCcCCccCCcchhcceecCCCChh-hHHHHHHHHhhCCCcCcccCCCCCh
Confidence            446899999999999999999999 9999999875 45589999998863

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.00  E-value=7.5e-11  Score=80.56  Aligned_cols=46  Identities=24%  Similarity=0.637  Sum_probs=38.3

Q ss_pred             cccccccccccCCc---eEEc-CCCCccchHhhHHHHhccCCccccccccc
Q 040660          432 ATSSCVICLDAPVE---GACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANI  478 (487)
Q Consensus       432 ~~~~C~iC~~~~~~---~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i  478 (487)
                      +..+|+||++....   +..+ +|||.| |..|+.+|...+..||+||+.|
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~F-h~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcc-cHHHHHHHHHhCCcCCCCCCEe
Confidence            33579999998753   3344 699999 9999999999888999999976

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=7.6e-11  Score=81.10  Aligned_cols=49  Identities=16%  Similarity=0.257  Sum_probs=43.6

Q ss_pred             ccccccccCCceEEcC-CCCccchHhhHHHHhccCCcccccccccc--ceeEe
Q 040660          435 SCVICLDAPVEGACVP-CGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRL  484 (487)
Q Consensus       435 ~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~  484 (487)
                      .|.||++...+++.++ |||.| |++|+.+|..++..||+||+++.  +++++
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~f-c~~cI~~~l~~~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred             CCccCCchHHhcCccCCCCCcc-cHHHHHHHHhhccCCCccCCcCCHHhceeC
Confidence            5999999999999885 99999 99999999988889999999986  45554

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.9e-10  Score=80.75  Aligned_cols=46  Identities=24%  Similarity=0.629  Sum_probs=36.9

Q ss_pred             cccccccccC-----CceEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660          434 SSCVICLDAP-----VEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ  480 (487)
Q Consensus       434 ~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  480 (487)
                      ..|+||++..     ...++.+|||.| |..|+.+|..+ ...||+||++|..
T Consensus         4 ~~CpIC~~~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           4 QGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCcCCceeecCCceEEEeCccChHh-hHHHHHHHhCcCcCCCCCCCcCccc
Confidence            5899999752     223567999999 99999999754 4579999999864

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.7e-10  Score=76.88  Aligned_cols=45  Identities=22%  Similarity=0.600  Sum_probs=36.4

Q ss_pred             ccccccccCCc----eEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660          435 SCVICLDAPVE----GACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ  480 (487)
Q Consensus       435 ~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  480 (487)
                      +|+||++....    ...++|||.| |..|+.+|... +..||+||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~-c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCC-CHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCcc-chHHHHHHHhhcCCCCCccCCcCCC
Confidence            79999986532    3345899999 99999999875 5579999998853

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=2.2e-10  Score=89.78  Aligned_cols=47  Identities=30%  Similarity=0.745  Sum_probs=41.3

Q ss_pred             cccccccccccCCceEEcCCCCccchHhhHHHHhccC---Ccccccccccc
Q 040660          432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK---WGCPVCRANIS  479 (487)
Q Consensus       432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~  479 (487)
                      +...|+||++.+.+++.++|||.| |..|+.+|....   ..||+||.++.
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             cCcCCCccCchhCCeEEcCCCCch-hhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            346899999999999999999999 999999987553   37999999885

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1e-09  Score=81.59  Aligned_cols=50  Identities=18%  Similarity=0.098  Sum_probs=43.7

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ  480 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  480 (487)
                      ..+...|+||++...++|.++|||.| |..|+.++... +..||+||.++..
T Consensus         4 iP~~l~CpIc~~l~~dPv~~~cGhtf-c~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCccccCcCcCchhhhhcccCCcCee-cHHHHHHHHhcCCccCCCccccccc
Confidence            34567999999999999999999999 99999998764 4579999999863

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.79  E-value=1.6e-09  Score=80.08  Aligned_cols=50  Identities=16%  Similarity=0.195  Sum_probs=43.8

Q ss_pred             CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ  480 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~  480 (487)
                      ..+...|+||++...++|.++|||.| |..|+.+|... ...||.|+.++..
T Consensus         5 iP~~l~CpIc~~~m~dPV~~~cgh~f-c~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCccCCCcCcCchhhCceEccCCCcc-hHHHHHHHHHHCCCCCCcccccCCc
Confidence            34557999999999999999999999 99999999875 4579999999863

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.8e-08  Score=76.43  Aligned_cols=49  Identities=10%  Similarity=-0.012  Sum_probs=43.9

Q ss_pred             CCcccccccccccCCceEEcCCCC-ccchHhhHHHHhccCCcccccccccc
Q 040660          430 KDATSSCVICLDAPVEGACVPCGH-MAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       430 ~~~~~~C~iC~~~~~~~~~~pCgH-~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      ..+.+.|+||.+...++|.++||| .| |..|+.+|...+..||+||+++.
T Consensus        19 ~P~~f~CPI~~~lm~dPV~~~~~~~ty-~r~~I~~~l~~~~~~P~~~~~l~   68 (98)
T d1wgma_          19 ACDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLT   68 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCC
T ss_pred             CcHHhCCcCchhHHHHHHhcccccchh-hHHHHHHHHHhcCCccccccccc
Confidence            345689999999999999999886 56 99999999988889999999986

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=2.6e-09  Score=82.50  Aligned_cols=46  Identities=28%  Similarity=0.765  Sum_probs=39.4

Q ss_pred             CcccccccccccCCceEEc-CCCCccchHhhHHHHhccCCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      .+...|.||++.+.+++.+ +|||.| |..|+.+|...  .||+||.++.
T Consensus        20 ~~~l~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~~--~CP~Cr~~~~   66 (97)
T d1jm7b_          20 EKLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIGT--GCPVCYTPAW   66 (97)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTTT--BCSSSCCBCS
T ss_pred             hhcCCCccCCchhhcCceeCCCCCch-hHHHHHHHHhc--cccccCCcCc
Confidence            3446899999999999865 899999 99999998753  5999998875

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.3e-08  Score=76.81  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=30.0

Q ss_pred             eEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660          446 GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS  479 (487)
Q Consensus       446 ~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~  479 (487)
                      ++.++|||.| |..|+.+|...+..||+||++..
T Consensus        52 ~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEEccccCcc-cHHHHHHHHHHCCcCCCCCCccc
Confidence            5667999999 99999999999889999999875

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=1.4e-08  Score=80.92  Aligned_cols=45  Identities=24%  Similarity=0.669  Sum_probs=36.0

Q ss_pred             cccccccccCCc------------------eEEcCCCCccchHhhHHHHhccC-----Ccccccccccc
Q 040660          434 SSCVICLDAPVE------------------GACVPCGHMAGCMSCLNEVKAKK-----WGCPVCRANIS  479 (487)
Q Consensus       434 ~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~-----~~CP~Cr~~i~  479 (487)
                      ..|.||++....                  ..+++|||.| |..|+..|....     ..||+||..+.
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~F-H~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChh-hHHHHHHHHHhcCcCCCCccccccchhc
Confidence            479999986532                  3568999999 999999998642     36999998774

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.32  E-value=1.2e-07  Score=65.65  Aligned_cols=48  Identities=21%  Similarity=0.444  Sum_probs=38.9

Q ss_pred             CcccccccccccCCceEEcCCC-----CccchHhhHHHHhcc--CCcccccccccc
Q 040660          431 DATSSCVICLDAPVEGACVPCG-----HMAGCMSCLNEVKAK--KWGCPVCRANIS  479 (487)
Q Consensus       431 ~~~~~C~iC~~~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CP~Cr~~i~  479 (487)
                      ++...|.||++...+....||+     |.| |..|+.+|...  +..||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~-H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEE-cHHHHHHHHhhCCCCCCcccCCeee
Confidence            3446899999988777777775     998 99999999753  458999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=4e-05  Score=57.89  Aligned_cols=41  Identities=24%  Similarity=0.582  Sum_probs=30.7

Q ss_pred             cccccccccCC--c-eEEcCCCCccchHhhHHHHhcc--------CCcccccc
Q 040660          434 SSCVICLDAPV--E-GACVPCGHMAGCMSCLNEVKAK--------KWGCPVCR  475 (487)
Q Consensus       434 ~~C~iC~~~~~--~-~~~~pCgH~~~C~~C~~~~~~~--------~~~CP~Cr  475 (487)
                      .+|.||++...  + +.+.+|||.| |..|+..+...        ...||.|+
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~f-C~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CcCccCCCcccCCceEEECCCCCEe-CCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            58999998763  2 4556899999 99999986532        12699864

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.07  E-value=0.024  Score=38.08  Aligned_cols=31  Identities=29%  Similarity=0.646  Sum_probs=27.4

Q ss_pred             cccccccccCCceEEcCCC----CccchHhhHHHHh
Q 040660          434 SSCVICLDAPVEGACVPCG----HMAGCMSCLNEVK  465 (487)
Q Consensus       434 ~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~  465 (487)
                      ..|.+|.|+..+.-|+.|-    |.| |+.|.+...
T Consensus         9 l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~si   43 (80)
T d2cs3a1           9 LCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESI   43 (80)
T ss_dssp             CCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHH
T ss_pred             eeeeeehhhhcCCceEeCCCCcCCce-eccccHHHH
Confidence            5899999999999999884    999 999988753