Citrus Sinensis ID: 040683

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
SPAASTASQCRSKEKNSLPEVSGTLKGKTESAISVTKTLVYAVFCIAVSFSPFKVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRSIER
Secondary Structure (PSIPRED)
ccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHcccccccEEEEcEEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
spaastasqcrskeknslpevsgtlkgktesaISVTKTLVYAVFCIAvsfspfkvpAIAATVASEVkldnkgreieTEVVFKEKDHEYADYTRRLLETVSNLLKIVEEvrggngdvKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIEslkgekvgAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRSIER
Flexible Loop (DISEMBL)
spaastasqcrskeknslpevsgtlkgktesaiSVTKTLVYAVFCIAVSFSPFKVPAIAATVasevkldnkgreietevvfkekdheyaDYTRRLLETVSNLLKIVeevrggngdvkraKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMvqteieslkgekvgaeELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMsigvrelcfierECEELVkrfsremrrrsier
Low Complexity Region (SEG)
SPAASTASQCRSKEKNSLPEVSGTLKGKTESAISVTKTLVYAVFCIAVSFSPFKVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDvkraklalkavkmrkEELQDEIMSGMYTelrelrlekeklvkrvGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRSIER
Disordered region (IsUnstruct)
*******************************AISVTKTLVYAVFCIAVSFSPFKVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKM******DEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVK*************
Disordered Region (DISOPRED)
****************************TESAISVTKTLVYAVFCIAVSFSPFKVPAIAATVASEVKLDNK*****************ADYTRRLLETVSNLLK**********************************************************IDEV**************************MEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFS**********
Disordered Region (DISEMBL)
*****************************ESAISVTKTLVYAVFCIAVSFSPFKVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSR*********
Disordered Region (DISPRO)
****************************TESAISVTKTLVYAVFCIAVSFSPFKVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRR****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SPAASTASQCRSKEKNSLPEVSGTLKGKTESAISVTKTLVYAVFCIAVSFSPFKVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDxxxxxxxxxxxxxxxxxxxxxIMSGMYTExxxxxxxxxxxxxxxxxxxxxVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRSIER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
255561987	1312	metalloprotease m41 ftsh, putative [Rici	0.972	0.185	0.515	4e-52
6721152	1293	unknown protein [Arabidopsis thaliana]	0.880	0.170	0.526	2e-49
240255277	1320	FtsH extracellular protease family [Arab	0.880	0.167	0.526	2e-49
297833118	1294	predicted protein [Arabidopsis lyrata su	0.912	0.176	0.497	2e-48
225451340	1320	PREDICTED: uncharacterized protein LOC10	0.840	0.159	0.486	5e-47
449449669	1328	PREDICTED: uncharacterized protein LOC10	0.836	0.158	0.463	2e-44
356533650	1246	PREDICTED: uncharacterized protein LOC10	0.856	0.172	0.455	1e-41
356574890	1274	PREDICTED: uncharacterized protein LOC10	0.972	0.191	0.432	5e-40
387965702	1044	cell division protein ftsH7 [Beta vulgar	0.852	0.204	0.379	3e-32
357441419	1221	Cell division protease ftsH-like protein	0.844	0.173	0.354	2e-27

>gi|255561987|ref|XP_002522002.1| metalloprotease m41 ftsh, putative [Ricinus communis] gi|223538806|gb|EEF40406.1| metalloprotease m41 ftsh, putative [Ricinus communis]

 Score =  210 bits (535), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/258 (51%), Positives = 175/258 (67%), Gaps = 14/258 (5%)

Query: 7   ASQC-RSKEKNSLPE-----VSGTLKGKTESAIS-VTKTLVYAVFCIAVSF-SPFKVPAI 58
           AS+C ++K++ SL +      +G L    ES I  +T+ +VYA+FCIA+ F S    PA 
Sbjct: 54  ASKCHKTKQEPSLHQKKLSFSTGYLTRHEESVIQCITRPIVYALFCIAIGFCSVGSFPAY 113

Query: 59  AAT---VASEV-KLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNG 114
           AA    VASEV +L  K +E +       K HEY+DY+R LL  VS LLK +EE R  NG
Sbjct: 114 AAVAEQVASEVIELKKKEKEKKLNEEKYSKGHEYSDYSRNLLAEVSVLLKCIEETRRRNG 173

Query: 115 DVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIE 174
           D +   LALKAVK +KE LQ +I+ G+Y+E+REL+ EKE L KR  KI+DE L  + E E
Sbjct: 174 DSEEVDLALKAVKAKKEGLQGQILEGLYSEVRELKKEKESLEKRADKILDEGLKARREYE 233

Query: 175 SL--KGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERE 232
           +L    EK   EEL + +G +E EY  +WE+VGEI+D +LRRET+AMS+G+RELCFIERE
Sbjct: 234 TLGINAEKGRMEELEERMGVIEEEYSGVWEKVGEIEDAILRRETMAMSVGIRELCFIERE 293

Query: 233 CEELVKRFSREMRRRSIE 250
           CEELVKRF++EMRR+S E
Sbjct: 294 CEELVKRFNQEMRRKSKE 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6721152|gb|AAF26780.1|AC016829_4 unknown protein [Arabidopsis thaliana]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/228 (52%), Positives = 157/228 (68%), Gaps = 7/228 (3%)

Query: 30  ESAIS-VTKTLVYAVFCIAVSFSP---FKVPAIAATVASEV-KLDNKGREIETEVVFKEK 84
           ES I  VTK LVYA+FCIA+  SP   F+ PA+A    S+V     K R  E EVV K  
Sbjct: 104 ESVIQFVTKPLVYALFCIAIGLSPIRSFQAPALAVPFVSDVIWKKKKERVREKEVVLKAV 163

Query: 85  DHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTE 144
           DHE++DYTRRLLETVS LLK +E VR  NG+V     AL AVK+ KE+LQ EIMSG+Y +
Sbjct: 164 DHEFSDYTRRLLETVSVLLKTIEIVRKENGEVAEVGAALDAVKVEKEKLQKEIMSGLYRD 223

Query: 145 LRELRLEKEKLVKRVGKIIDEVLMVQTEIESL--KGEKVGAEELLDMIGTMEREYDELWE 202
           +R LR E++ L+KR  KI+DE L ++ + E L  KG +   E+L + +  ME EY+++WE
Sbjct: 224 MRRLRKERDLLMKRADKIVDEALSLKKQSEKLLRKGAREKMEKLEESVDIMESEYNKIWE 283

Query: 203 RVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRSIE 250
           R+ EIDD +L++ET  +S GVREL FIEREC ELVK F+RE+ ++S E
Sbjct: 284 RIDEIDDIILKKETTTLSFGVRELIFIERECVELVKSFNRELNQKSFE 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255277|ref|NP_187084.6| FtsH extracellular protease family [Arabidopsis thaliana] gi|332640547|gb|AEE74068.1| FtsH extracellular protease family [Arabidopsis thaliana]

 Score =  201 bits (512), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/228 (52%), Positives = 157/228 (68%), Gaps = 7/228 (3%)

Query: 30  ESAIS-VTKTLVYAVFCIAVSFSP---FKVPAIAATVASEV-KLDNKGREIETEVVFKEK 84
           ES I  VTK LVYA+FCIA+  SP   F+ PA+A    S+V     K R  E EVV K  
Sbjct: 104 ESVIQFVTKPLVYALFCIAIGLSPIRSFQAPALAVPFVSDVIWKKKKERVREKEVVLKAV 163

Query: 85  DHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTE 144
           DHE++DYTRRLLETVS LLK +E VR  NG+V     AL AVK+ KE+LQ EIMSG+Y +
Sbjct: 164 DHEFSDYTRRLLETVSVLLKTIEIVRKENGEVAEVGAALDAVKVEKEKLQKEIMSGLYRD 223

Query: 145 LRELRLEKEKLVKRVGKIIDEVLMVQTEIESL--KGEKVGAEELLDMIGTMEREYDELWE 202
           +R LR E++ L+KR  KI+DE L ++ + E L  KG +   E+L + +  ME EY+++WE
Sbjct: 224 MRRLRKERDLLMKRADKIVDEALSLKKQSEKLLRKGAREKMEKLEESVDIMESEYNKIWE 283

Query: 203 RVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRSIE 250
           R+ EIDD +L++ET  +S GVREL FIEREC ELVK F+RE+ ++S E
Sbjct: 284 RIDEIDDIILKKETTTLSFGVRELIFIERECVELVKSFNRELNQKSFE 331

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833118|ref|XP_002884441.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330281|gb|EFH60700.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  198 bits (503), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 118/237 (49%), Positives = 156/237 (65%), Gaps = 8/237 (3%)

Query: 22  SGTLKGKT-ESAIS-VTKTLVYAVFCIAVSFSP---FKVPAIAATVASEV-KLDNKGREI 75
           S     KT ES I  V+K LVY +FCIA+ FSP   F+ PA+A    S+V     K    
Sbjct: 96  SSVYNAKTRESVIQFVSKPLVYVLFCIAIGFSPIHSFQAPALAVPFVSDVIWKKKKETLK 155

Query: 76  ETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQD 135
           E EVV K  DHE++DYTRRLLETVS LLK +++VR  NGDV     AL  VK+ KE+LQ 
Sbjct: 156 EKEVVLKAVDHEFSDYTRRLLETVSVLLKTIDKVRKENGDVAEVGTALDTVKVEKEKLQK 215

Query: 136 EIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESL--KGEKVGAEELLDMIGTM 193
           EIM+G+Y ++R LR E++ L+KR   I+DE L ++ E E L  KG +   E+L + +  M
Sbjct: 216 EIMTGLYRDMRRLRKERDVLMKRADGIVDEALRLKKESEKLLRKGAREKVEKLEESVDIM 275

Query: 194 EREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRSIE 250
           E EY+++WER+ EI D +L++ET  +S GVREL FIEREC ELVK F+RE  ++S E
Sbjct: 276 ETEYNKIWERIDEIVDIILKKETTTLSFGVRELIFIERECVELVKSFNRETNQKSSE 332

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451340|ref|XP_002274609.1| PREDICTED: uncharacterized protein LOC100248755 [Vitis vinifera] gi|298204855|emb|CBI34162.3| unnamed protein product [Vitis vinifera]

 Score =  193 bits (491), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 109/224 (48%), Positives = 153/224 (68%), Gaps = 13/224 (5%)

Query: 35  VTKTLVYAVFCIAVSFSP---FKVPAIAATVASEVKLDNK--GREIETEVVFKEKDHEYA 89
           + + +V+AVFCIAV F P   F+VPAIAA VAS+V    K  G+ +E     K KDH+Y+
Sbjct: 103 IARPIVFAVFCIAVGFFPTGRFQVPAIAAPVASDVMWKKKESGKVLEETKELKSKDHKYS 162

Query: 90  DYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELR 149
           D TR LLE VS LL+ +EEVR G  D+K+ +  L+ VK++KEELQ+EIM+ +Y ELREL+
Sbjct: 163 DCTRSLLEVVSGLLRSIEEVRSGKADMKKVEAVLREVKLKKEELQEEIMNELYAELRELK 222

Query: 150 LEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVG-----AEELLDMIGTMER---EYDELW 201
            EK+ L  R  +I+D V+  + E + L G+  G      E++  +  +M R   EY ++W
Sbjct: 223 REKDGLSDRSEEIVDMVVKAKREHDRLLGKASGDGKKIKEQIARLEESMSRLDEEYAKIW 282

Query: 202 ERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMR 245
           ER+GEI+D++LRR+T+AMSIG+REL FI RE E+LV  F REM+
Sbjct: 283 ERIGEIEDRILRRDTMAMSIGIRELSFITRESEQLVASFRREMK 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449669|ref|XP_004142587.1| PREDICTED: uncharacterized protein LOC101207174 [Cucumis sativus]

 Score =  185 bits (469), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/231 (46%), Positives = 154/231 (66%), Gaps = 21/231 (9%)

Query: 35  VTKTLVYAVFCIAVSFSPF---KVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADY 91
           + K +VY +FCIAV F PF   K PAIAA V ++   D K  E   EV    + HEY+++
Sbjct: 108 IAKPVVYTLFCIAVGFVPFRTVKAPAIAAQVVADRVFDKKAYE---EVESNLRGHEYSEF 164

Query: 92  TRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLE 151
           TR+LLE VS +   +EE R GN  V++ ++ALK VK+ K +LQ+ I++ ++T+LR+L+ E
Sbjct: 165 TRQLLEAVSYVSMSIEEARKGNCSVEQVEMALKTVKLYKVKLQEGILNYLHTQLRDLKRE 224

Query: 152 KEKLVKRVGKIIDEVLMVQTEIESLKGEKVG-----AEELLD---------MIGTMEREY 197
           K  L +R+  +++EV+  + E E L  EK+G     ++E +D         ++  +E EY
Sbjct: 225 KVGLERRLEGVVNEVVEAKWEYERLV-EKMGSSRKESKERMDRERMARLEQIMRMLEVEY 283

Query: 198 DELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRS 248
           +E+WERVGEI D + RRETVA+S GVRELCFIEREC++LVKRF+REMR R 
Sbjct: 284 NEIWERVGEIGDIIFRRETVALSFGVRELCFIERECDQLVKRFTREMRARG 334

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356533650|ref|XP_003535374.1| PREDICTED: uncharacterized protein LOC100794385 [Glycine max]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 102/224 (45%), Positives = 138/224 (61%), Gaps = 9/224 (4%)

Query: 35  VTKTLVYAVFCIAVSFSPFKVPAIAATVASEVKLDNKGREIETEVVFKEKDHEYADYTRR 94
           +TK LV A+FC AV FS            +         +  TE   + K H+Y+D T R
Sbjct: 30  ITKKLVRALFCFAVGFSALGAFHAPPPAFAIAAPWTYWAKRGTEEKERAKSHQYSDCTDR 89

Query: 95  LLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEK 154
           LLETVS LLK V+EVR GNGDV  A+ AL+AVK +KEE++ EI   +Y  L+ LR E++ 
Sbjct: 90  LLETVSFLLKTVDEVRNGNGDVSEAEAALEAVKSKKEEMRKEINGRLYPALKRLRRERKA 149

Query: 155 LVKRVGKIIDEVLMVQTEIESLKGEKVGAE---------ELLDMIGTMEREYDELWERVG 205
           L KR G+I+ E+L    E + LK +    E         EL + +G ME EY+ +WERVG
Sbjct: 150 LWKRSGEIVGEILNAMAEYDKLKAKVAANEKENENARMKELEESVGVMEDEYNGVWERVG 209

Query: 206 EIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRSI 249
           EI+D++ R ETVA+S GVRE+ FIERECE+LV+RF RE++ +  
Sbjct: 210 EIEDRISREETVALSYGVREINFIERECEQLVERFKREVKNKDF 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574890|ref|XP_003555576.1| PREDICTED: uncharacterized protein LOC100817872 [Glycine max]

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 113/261 (43%), Positives = 155/261 (59%), Gaps = 17/261 (6%)

Query: 2   PAASTASQCRSKEKNSLPEVSGTLKGKTESAIS---VTKTLVYAVFCIAVSFSP---FKV 55
           P  +  S  R   +  L     T   K+  + +   + K LV A+FC AV FS    F+ 
Sbjct: 25  PNRTFISNPRRTPRTPLSLAPITFAAKSTPSPNDDVLFKRLVRALFCFAVGFSALGAFRA 84

Query: 56  PAIAATVASEVKLDNKGREIETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGD 115
           P  A  +A+      K R  E E   + K H+Y+D T RLLETVS LLK V+EVR GNG+
Sbjct: 85  PPPAFAIAAPWTYWGK-RGAEKE---RAKSHQYSDCTDRLLETVSFLLKTVDEVREGNGE 140

Query: 116 VKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIES 175
           V   + AL++VK +KEEL+ EI   +Y  L+ LR E++ L KR G+I+ E+L    E E 
Sbjct: 141 VNEVEAALESVKSKKEELRKEINGRLYPALKRLRRERKALWKRSGEIVGEILKATAEYEK 200

Query: 176 LKGEKVGAE-------ELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCF 228
           LK +  G E       EL + +G ME EY+ +WERVGEI+D++ R ETVA+S GVRE+ F
Sbjct: 201 LKVKVAGNEKENARMKELEESVGVMEDEYNGVWERVGEIEDRISREETVALSYGVREINF 260

Query: 229 IERECEELVKRFSREMRRRSI 249
           IERECE+LV+RF RE++ +  
Sbjct: 261 IERECEQLVERFKREIKNKDF 281

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|387965702|gb|AFK13831.1| cell division protein ftsH7 [Beta vulgaris subsp. vulgaris]

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/232 (37%), Positives = 145/232 (62%), Gaps = 18/232 (7%)

Query: 35  VTKTLVYAVFCIAVSFSPF---KVPAIAATVASEVKLDNKGREIETE-VVFKEKDHEYAD 90
           ++K++ + +F I +   P    + PAIA  V S++    KG+ ++ E  +    +HEY+ 
Sbjct: 99  ISKSIAFTLFLIVIGICPIGGNQPPAIALPVISDLLWRRKGKIVKEEPTLVSWSEHEYSG 158

Query: 91  YTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRL 150
           +T+RLLE+VS +LK+++EVR G   +K  ++ALK VK++K E+Q EIMS ++ E+R+   
Sbjct: 159 HTQRLLESVSGVLKVMKEVRDGESGIKDLEVALKEVKLKKYEIQSEIMSRLFAEVRKFGK 218

Query: 151 EKEKLVKRVGKIIDEVLMVQTEIESL-------KGEKVGAEELLDMIGTM-------ERE 196
           +KEKL++R  K++  VL  + E + L       +G+    E + + IG +       E+E
Sbjct: 219 KKEKLIERADKVLIAVLNAKREQDKLLISLRDTRGDDPEDENVRERIGRLVERLDNGEKE 278

Query: 197 YDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRS 248
           Y+EL E++ EI+++  R ET+  SIGVREL FIE+ECE LV+RF  E+R  +
Sbjct: 279 YNELQEKLEEIEEQKSRMETMVFSIGVRELSFIEKECELLVQRFILEIRHNA 330

Source: Beta vulgaris subsp. vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357441419|ref|XP_003590987.1| Cell division protease ftsH-like protein [Medicago truncatula] gi|355480035|gb|AES61238.1| Cell division protease ftsH-like protein [Medicago truncatula]

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/234 (35%), Positives = 142/234 (60%), Gaps = 22/234 (9%)

Query: 31  SAISVTKTLVY-AVFCIAV---SFSPFKV-PAIAATVASEVKLDNKGREIETEVVFKEKD 85
           S   +TK L+  A+FC AV   +F  F++ PA A      V+  +K +E        +  
Sbjct: 65  SQCCLTKQLILRALFCFAVGVSTFGTFQIAPAFALPTIPWVQFLSKNKE-------NKNQ 117

Query: 86  HEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTEL 145
           HEY+D T+++L+TV +LL+ +EEVR GNGD +  K AL+ VK++K E++ EI+  M+  L
Sbjct: 118 HEYSDCTQKVLDTVPSLLRTIEEVRKGNGDFEDVKRALEFVKLKKYEMEKEILERMHPVL 177

Query: 146 RELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEE---------LLDM-IGTMER 195
            +L+ E   L  + G+I  ++  V  E   L G ++  ++         +LD  +  +E+
Sbjct: 178 MDLKEELRLLQIKEGEISWQMAEVNREHRKLMGWEMDMKDNVVNEVEKKVLDKRMVELEK 237

Query: 196 EYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMRRRSI 249
           +++E+  ++ E++D + R+ETVA+S GV E+CFI+RECE LV+RF +E++++ I
Sbjct: 238 KWNEILVKIDEMEDVISRKETVALSYGVLEICFIQRECENLVERFKQEIKQKKI 291

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2103055	1320	emb2458 "embryo defective 2458	0.944	0.179	0.453	1.8e-43

TAIR|locus:2103055 emb2458 "embryo defective 2458" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 1.8e-43, P = 1.8e-43
 Identities = 111/245 (45%), Positives = 143/245 (58%)

Query:    14 EKNSLPEVSGTLKGKT-ESAIS-VTKTLVYAVFCIAVSFSP---FKVPAIAATVASEVKL 68
             E N L   S     KT ES I  VTK LVYA+FCIA+  SP   F+ PA+A    S+V  
Sbjct:    87 EGNELVLSSEYNSAKTRESVIQFVTKPLVYALFCIAIGLSPIRSFQAPALAVPFVSDVIW 146

Query:    69 DNKGREI-ETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDXXXXXXXXXXXX 127
               K   + E EVV K  DHE++DYTRRLLETVS LLK +E VR  NG+            
Sbjct:   147 KKKKERVREKEVVLKAVDHEFSDYTRRLLETVSVLLKTIEIVRKENGEVAEVGAALDAVK 206

Query:   128 XXXEELQDEIMSGMYTXXXXXXXXXXXXXXXXGKIIDEVLMVQTEIESL--KGEKVGAEE 185
                E+LQ EIMSG+Y                  KI+DE L ++ + E L  KG +   E+
Sbjct:   207 VEKEKLQKEIMSGLYRDMRRLRKERDLLMKRADKIVDEALSLKKQSEKLLRKGAREKMEK 266

Query:   186 LLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSREMR 245
             L + +  ME EY+++WER+ EIDD +L++ET  +S GVREL FIEREC ELVK F+RE+ 
Sbjct:   267 LEESVDIMESEYNKIWERIDEIDDIILKKETTTLSFGVRELIFIERECVELVKSFNRELN 326

Query:   246 RRSIE 250
             ++S E
Sbjct:   327 QKSFE 331


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.131   0.353    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      251       220   0.00094  112 3  11 23  0.43    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  589 (63 KB)
  Total size of DFA:  154 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.66u 0.26s 18.92t   Elapsed:  00:00:01
  Total cpu time:  18.66u 0.26s 18.92t   Elapsed:  00:00:01
  Start:  Sat May 11 07:18:24 2013   End:  Sat May 11 07:18:25 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0016887 "ATPase activity" evidence=ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	emb2458	emb2458 (embryo defective 2458); ATP binding / ATPase/ metalloendopeptidase/ nucleoside-triphosphatase/ nucleotide binding; embryo defective 2458 (emb2458); FUNCTIONS IN- nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN- embryonic development ending in seed dormancy; LOCATED IN- chloroplast, chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- ATPase, AAA+ type, core (InterPro-IPR003593), ATPase, AAA-type, core (InterPro-IPR003959), Peptida [...] (1320 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	EMB1865	EMB1865 (embryo defective 1865); RNA binding; embryo defective 1865 (EMB1865); FUNCTIONS IN- RN [...] (848 aa)				•			•		0.878
	EMB2750	EMB2750 (embryo defective 2750); embryo defective 2750 (EMB2750); INVOLVED IN- embryonic develo [...] (486 aa)							•		0.825
	emb2394	emb2394 (embryo defective 2394); structural constituent of ribosome; embryo defective 2394 (emb [...] (223 aa)				•			•		0.794
	HPA1	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1); histidinol-phosphate transaminase; Encodes hist [...] (417 aa)				•			•		0.757
	EMB25	EMB25 (EMBRYO DEFECTIVE 25); ATP-dependent helicase/ RNA helicase; Allelic to ISE2(increased si [...] (1171 aa)				•			•		0.754
	EMB2453	EMB2453 (embryo defective 2453); embryo defective 2453 (EMB2453); INVOLVED IN- embryonic develo [...] (563 aa)				•			•		0.745
	emb2279	emb2279 (embryo defective 2279); embryo defective 2279 (emb2279); INVOLVED IN- embryonic develo [...] (1006 aa)				•			•		0.731
	CHLD	CHLD; ATP binding / magnesium chelatase/ nucleoside-triphosphatase/ nucleotide binding; CHLD; F [...] (760 aa)				•			•		0.672
	PTAC12	PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12); Present in transcriptionally active plastid chromo [...] (527 aa)				•					0.669
	AT5G18570	GTP1/OBG family protein; GTP1/OBG family protein; FUNCTIONS IN- GTP binding, nucleotide binding [...] (681 aa)				•					0.667

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PHA02562	562	46 endonuclease subunit; Provisional	95.43
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.05
PF05816	333	TelA: Toxic anion resistance protein (TelA); Inter	91.53
PF08580	683	KAR9: Yeast cortical protein KAR9; InterPro: IPR01	91.3
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	90.74
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	89.69
PRK02224	880	chromosome segregation protein; Provisional	89.61
PRK02224	880	chromosome segregation protein; Provisional	89.42
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	89.04
PF10186	302	Atg14: UV radiation resistance protein and autopha	88.85
PF02403	108	Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal dom	86.55
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	86.08
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	85.8
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	85.7
PRK11637	428	AmiB activator; Provisional	85.59
KOG0979	1072	consensus Structural maintenance of chromosome pro	84.75
PRK04863	1486	mukB cell division protein MukB; Provisional	83.91
PRK04778	569	septation ring formation regulator EzrA; Provision	83.56
PRK01156	895	chromosome segregation protein; Provisional	80.6

>PHA02562 46 endonuclease subunit; Provisional

Probab=95.43  E-value=0.73  Score=42.90  Aligned_cols=97  Identities=16%  Similarity=0.275  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhh---
Q 040683          142 YTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVA---  218 (251)
Q Consensus       142 y~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~a---  218 (251)
                      ...+.+++.+...+.......+...-.++.+.++|-   ....++++.+..++.+|+++-..+.+++....+++.+.   
T Consensus       336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~---~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~~~~i~~~~  412 (562)
T PHA02562        336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ---AEFVDNAEELAKLQDELDKIVKTKSELVKEKYHRGIVTDLL  412 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444444445555555532   22455788899999999999999999998888887643   


Q ss_pred             hhhhhhhhhHhHHHHHHHHHHHHHHHHh
Q 040683          219 MSIGVRELCFIERECEELVKRFSREMRR  246 (251)
Q Consensus       219 mSiGVrEL~FIeREce~LV~rF~~Emr~  246 (251)
                      -..|++  .+|.   ...+..|+..|.+
T Consensus       413 ~~~g~~--~~i~---~~~l~~~n~~~~~  435 (562)
T PHA02562        413 KDSGIK--ASII---KKYIPYFNKQINH  435 (562)
T ss_pred             HhhhHH--HHHH---HHHHHHHHHHHHH
Confidence            356887  5565   4577888888765

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.05  E-value=1.1  Score=40.70  Aligned_cols=97  Identities=20%  Similarity=0.370  Sum_probs=57.6

Q ss_pred             CChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHH
Q 040683          114 GDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDM  189 (251)
Q Consensus       114 gd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~  189 (251)
                      .+..+...++-+.....+.++.++ +++=.+++++++.++.++..-+.     .+-.+|++.|-+.    .+.+..|++.
T Consensus        38 ~e~e~~~~~~~~~~~e~e~le~qv-~~~e~ei~~~r~r~~~~e~kl~~-----v~~~~e~~aL~~E~~~ak~r~~~le~e  111 (239)
T COG1579          38 AELEALNKALEALEIELEDLENQV-SQLESEIQEIRERIKRAEEKLSA-----VKDERELRALNIEIQIAKERINSLEDE  111 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555666666666665 45666677777666655554433     3334666665554    5556666666


Q ss_pred             HHhhHHHHHHHHHHhhhhhhHhhhhhh
Q 040683          190 IGTMEREYDELWERVGEIDDKMLRRET  216 (251)
Q Consensus       190 m~~~E~Eyneiweki~EIeD~ilRrET  216 (251)
                      |..+..++.++-..+...-+.+.+.|+
T Consensus       112 l~~l~~~~~~l~~~i~~l~~~~~~~e~  138 (239)
T COG1579         112 LAELMEEIEKLEKEIEDLKERLERLEK  138 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666665554

>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins

Probab=91.53  E-value=3.6  Score=37.66  Aligned_cols=58  Identities=22%  Similarity=0.419  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhhHHHHhhhhh-hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhh
Q 040683          159 VGKIIDEVLMVQTEIESLKGE-KVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRET  216 (251)
Q Consensus       159 a~kI~d~~l~~krE~ekLlg~-~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET  216 (251)
                      .+++...-=+++.++|++.+. ..|...|.+....++..|+..|+-+.+++..|.--+.
T Consensus        86 ~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~  144 (333)
T PF05816_consen   86 LERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGEL  144 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555667777777777 6677889999999999999999999999888765443

TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].

>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []

Probab=91.30  E-value=5.5  Score=40.72  Aligned_cols=126  Identities=20%  Similarity=0.290  Sum_probs=96.4

Q ss_pred             HHHHHHHHHhhhchHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHH
Q 040683          117 KRAKLALKAVKMRKEELQDEIMSGMYTE-LRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIG  191 (251)
Q Consensus       117 k~v~~ALk~VKlkKeelQ~EIms~ly~e-lr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~  191 (251)
                      .=+.+.|+++-++-++-|.-- +..|+. ..+|....+.|+++-.+...++-.+|+|.=. -.|    +-=+.++..+++
T Consensus       209 ~PLraSLdfLP~Ri~~F~~ra-~~~fp~a~e~L~~r~~~L~~k~~~L~~e~~~LK~ELie-dRW~~vFr~l~~q~~~m~e  286 (683)
T PF08580_consen  209 QPLRASLDFLPMRIEEFQSRA-ESIFPSACEELEDRYERLEKKWKKLEKEAESLKKELIE-DRWNIVFRNLGRQAQKMCE  286 (683)
T ss_pred             chHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHH
Confidence            346788999999999988776 445554 4567777888888888888888888888644 345    555888999999


Q ss_pred             hhHHHHHHHHHHhhh---------hhhHhhhhhhhhhhhh-----hhhhhHhHHHHHHHHHHHHHHHHhh
Q 040683          192 TMEREYDELWERVGE---------IDDKMLRRETVAMSIG-----VRELCFIERECEELVKRFSREMRRR  247 (251)
Q Consensus       192 ~~E~Eyneiweki~E---------IeD~ilRrET~amSiG-----VrEL~FIeREce~LV~rF~~Emr~~  247 (251)
                      .+|+...++.+.++-         |-++|--+|.....+|     -|+++-|+..   +..||+.+|.++
T Consensus       287 sver~~~kl~~~~~~~~~~~~~~~l~~~i~s~~~k~~~~~~~I~ka~~~sIi~~g---v~~r~n~~L~~r  353 (683)
T PF08580_consen  287 SVERSLSKLQEAIDSGIHLDNPSKLSKQIESKEKKKSHYFPAIYKARVLSIIDKG---VADRLNADLAQR  353 (683)
T ss_pred             HHHHHHHHhhccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHhhhhh---HHHHhhHHHHHH
Confidence            999999999999765         7778888886666555     3566666665   788999888765

KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=90.74  E-value=10  Score=32.86  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHhc
Q 040683           86 HEYADYTRRLLETVSNLLKIVEEVRG  111 (251)
Q Consensus        86 HEYSd~TrrLLetVs~lLk~ieeVR~  111 (251)
                      .-|+|-|++-|+.+..|=.-|.+.|+
T Consensus        16 ~YYndIT~~NL~lIksLKeei~emkk   41 (201)
T PF13851_consen   16 NYYNDITLNNLELIKSLKEEIAEMKK   41 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999888888775

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=89.69  E-value=3.2  Score=34.06  Aligned_cols=25  Identities=16%  Similarity=0.368  Sum_probs=11.9

Q ss_pred             HHHHHHhhHHHHHHHHHHhhhhhhH
Q 040683          186 LLDMIGTMEREYDELWERVGEIDDK  210 (251)
Q Consensus       186 L~e~m~~~E~Eyneiweki~EIeD~  210 (251)
                      +...+..+...|+.+.+.+.+.++.
T Consensus       163 ~~~~~~~~~~~~~~l~~~~~~~~~l  187 (191)
T PF04156_consen  163 LRSQLERLQENLQQLEEKIQELQEL  187 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444445555555555444443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK02224 chromosome segregation protein; Provisional

Probab=89.61  E-value=19  Score=35.94  Aligned_cols=29  Identities=34%  Similarity=0.573  Sum_probs=12.1

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683          183 AEELLDMIGTMEREYDELWERVGEIDDKM  211 (251)
Q Consensus       183 ~~~L~e~m~~~E~Eyneiweki~EIeD~i  211 (251)
                      +..+.+++..+++.++.+-.+|.++++.+
T Consensus       260 ~~~l~~~i~~~e~~~~~l~~~i~~~~~~~  288 (880)
T PRK02224        260 IEDLRETIAETEREREELAEEVRDLRERL  288 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444444444433

>PRK02224 chromosome segregation protein; Provisional

Probab=89.42  E-value=25  Score=35.20  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=31.5

Q ss_pred             hHHHHHHHHHhhhchHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 040683          116 VKRAKLALKAVKMRKEELQDEIMSGMYTELR-------ELRLEKEKLVKRVGKIIDEVLMVQTEIESL  176 (251)
Q Consensus       116 ~k~v~~ALk~VKlkKeelQ~EIms~ly~elr-------~lkkeke~L~~Ra~kI~d~~l~~krE~ekL  176 (251)
                      +.++...+..+.-++..++ + +..++.++.       +|+.+++.|..+-+++-...-..+.+++.|
T Consensus       574 ~~~~~~~~~~l~~~~~~le-~-~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l  639 (880)
T PRK02224        574 VAELNSKLAELKERIESLE-R-IRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL  639 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555 2 444555444       444444455555555666666666666665

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=89.04  E-value=24  Score=38.51  Aligned_cols=119  Identities=20%  Similarity=0.351  Sum_probs=65.1

Q ss_pred             hHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhhh----hhhhHHHHHHH
Q 040683          116 VKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEV-LMVQTEIESLKGE----KVGAEELLDMI  190 (251)
Q Consensus       116 ~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~-l~~krE~ekLlg~----~~~~~~L~e~m  190 (251)
                      ++.+...++.++.+..+++.+|= .--..+++++++.+.|.+....+=-+. =.++.+.+..=.+    ..-++.|++-+
T Consensus       339 i~~~r~~~~~~~re~~~~~~~~~-~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~  417 (1074)
T KOG0250|consen  339 IEEARKDLDDLRREVNDLKEEIR-EIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQI  417 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444431 223345555555555555444332222 1111111111111    33377788888


Q ss_pred             HhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHH
Q 040683          191 GTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEEL  236 (251)
Q Consensus       191 ~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~L  236 (251)
                      ..|..++|.+.+++-+++....-.+++-.++- +-+.|+..+...|
T Consensus       418 ~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~-k~i~~~~~~l~~l  462 (1074)
T KOG0250|consen  418 NSLREELNEVKEKAKEEEEEKEHIEGEILQLR-KKIENISEELKDL  462 (1074)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            88889999999998888887766666555543 4567777777666

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=88.85  E-value=7.3  Score=32.99  Aligned_cols=61  Identities=23%  Similarity=0.340  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHhhhchHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Q 040683          116 VKRAKLALKAVKMRKEELQDEIMSGMY-------TELRELRLEKEKLVKRVGKIIDEVLMVQTEIESL  176 (251)
Q Consensus       116 ~k~v~~ALk~VKlkKeelQ~EIms~ly-------~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekL  176 (251)
                      +-+....|..++...+.++.+|-.-|-       .....++.+...+..|...+-..+-..+++.+..
T Consensus        22 L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~   89 (302)
T PF10186_consen   22 LLELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQK   89 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566777778888888888887777654       4667778888888888888887777777777764

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6

Probab=86.55  E-value=4.3  Score=30.84  Aligned_cols=65  Identities=29%  Similarity=0.357  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH---HHhhhhh----hhhhHHHHHHHHhhHHHHHHHHHHh
Q 040683          140 GMYTELRELRLEKEKLVKRVGKIIDEVLMVQTE---IESLKGE----KVGAEELLDMIGTMEREYDELWERV  204 (251)
Q Consensus       140 ~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE---~ekLlg~----~~~~~~L~e~m~~~E~Eyneiweki  204 (251)
                      .||.+.|.+..+.+.|..+--.+..++-.+++.   .+.|+-.    ++.+..|++.+..++.+++.++-.|
T Consensus        33 ~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i  104 (108)
T PF02403_consen   33 ELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI  104 (108)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            467788888888888888877777777666653   3333332    4446666666666666666665444

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=86.08  E-value=39  Score=35.92  Aligned_cols=97  Identities=23%  Similarity=0.312  Sum_probs=63.7

Q ss_pred             HHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh-----------hhhhHHHHHHHHh
Q 040683          124 KAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE-----------KVGAEELLDMIGT  192 (251)
Q Consensus       124 k~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~-----------~~~~~~L~e~m~~  192 (251)
                      .++.......+... +++..++..+..+.+.+..+.+.+-..+-....+.+.+.+.           .+.+..+.+....
T Consensus       810 ~~~~~~~~~~~~~~-~~~~~ei~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~~~~~~~~  888 (1163)
T COG1196         810 DALERELESLEQRR-ERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE  888 (1163)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444 56778888888888888877777777777777666666655           2335566666666


Q ss_pred             hHHHHHHHHHHhhhhhhHhhhhhhhhhhh
Q 040683          193 MEREYDELWERVGEIDDKMLRRETVAMSI  221 (251)
Q Consensus       193 ~E~Eyneiweki~EIeD~ilRrET~amSi  221 (251)
                      +++++.++-..+.++...+.+-.+....+
T Consensus       889 l~~~l~~~~~~~~~~~~~~~~~~~~~~~l  917 (1163)
T COG1196         889 LEEELRELESELAELKEEIEKLRERLEEL  917 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67777777777777777777777766655

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=85.80  E-value=30  Score=34.10  Aligned_cols=64  Identities=22%  Similarity=0.376  Sum_probs=48.1

Q ss_pred             hHHHHHHHHhhHHHHHHHHHHhhhhhhHhhh--hhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHh
Q 040683          183 AEELLDMIGTMEREYDELWERVGEIDDKMLR--RETVAMSIGVRELCFIERECEELVKRFSREMRR  246 (251)
Q Consensus       183 ~~~L~e~m~~~E~Eyneiweki~EIeD~ilR--rET~amSiGVrEL~FIeREce~LV~rF~~Emr~  246 (251)
                      ...+.+++.....-|+.|.+.+.++.+.+..  .+-..|+=.+..|+-=|.+..+-+..|.+.|+.
T Consensus       360 ~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~  425 (560)
T PF06160_consen  360 YEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE  425 (560)
T ss_pred             HHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555577777777777777654  456788889999999999999999999998864

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=85.70  E-value=10  Score=31.19  Aligned_cols=53  Identities=26%  Similarity=0.384  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhh
Q 040683          155 LVKRVGKIIDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEI  207 (251)
Q Consensus       155 L~~Ra~kI~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EI  207 (251)
                      |...=+..-.+++++-.+.+.+-.....+..|...+..++..|+-+.+-+||=
T Consensus        42 l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK   94 (120)
T PF12325_consen   42 LEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEK   94 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            33333344444555555555544444556666666666666666666666553

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK11637 AmiB activator; Provisional

Probab=85.59  E-value=30  Score=32.36  Aligned_cols=14  Identities=14%  Similarity=0.434  Sum_probs=7.6

Q ss_pred             eehhhHHH-HHHHHh
Q 040683           34 SVTKTLVY-AVFCIA   47 (251)
Q Consensus        34 citk~iv~-AlFcia   47 (251)
                      +-.+|++. +|+|.+
T Consensus        18 ~~~~~~~~~~ll~~~   32 (428)
T PRK11637         18 FAIRPILYASVLSAG   32 (428)
T ss_pred             hhhhhHHHHHHHHHH
Confidence            44577766 444433

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=84.75  E-value=15  Score=40.01  Aligned_cols=146  Identities=17%  Similarity=0.198  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHHHHHHhcCC----CChHHHHHHHHHhhhchHHHHHHH------HHhHHHHHHHHHHHHHHHHHHHHHH
Q 040683           93 RRLLETVSNLLKIVEEVRGGN----GDVKRAKLALKAVKMRKEELQDEI------MSGMYTELRELRLEKEKLVKRVGKI  162 (251)
Q Consensus        93 rrLLetVs~lLk~ieeVR~gn----gd~k~v~~ALk~VKlkKeelQ~EI------ms~ly~elr~lkkeke~L~~Ra~kI  162 (251)
                      |.|.+.+-.+...++++++..    .+++.+..-+++-..+--+.++.+      |..++..++.|++.-++.+.|+.+-
T Consensus       265 r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~  344 (1072)
T KOG0979|consen  265 RKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKA  344 (1072)
T ss_pred             HHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666777777622    233444444555555444444443      4577888888888888888888888


Q ss_pred             HHHHHHhhHHHHhhhhhhhhhHHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhhhhhhhhhhhhhhHhHHHHHHHHHHHHH
Q 040683          163 IDEVLMVQTEIESLKGEKVGAEELLDMIGTMEREYDELWERVGEIDDKMLRRETVAMSIGVRELCFIERECEELVKRFSR  242 (251)
Q Consensus       163 ~d~~l~~krE~ekLlg~~~~~~~L~e~m~~~E~Eyneiweki~EIeD~ilRrET~amSiGVrEL~FIeREce~LV~rF~~  242 (251)
                      .-+.+.++.|..+.-+-..+-+++.+-+......|++....-.+++|...-+.+-     -+.+-=+.|+    .+.|+.
T Consensus       345 ~k~i~~~q~el~~~~~~e~~~~~~~ei~~~~~~~~~~~~~~~~~~id~~~~~~~~-----~~~l~~~kr~----~~~~~~  415 (1072)
T KOG0979|consen  345 KKMILDAQAELQETEDPENPVEEDQEIMKEVLQKKSSKLRDSRQEIDAEQLKSQK-----LRDLENKKRK----LKQNSD  415 (1072)
T ss_pred             HHHHHHHHhhhhhcCCccccchhHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH-----HHHHHHHHHH----HHHHhh
Confidence            8888888888888777788899998889999999999999988888887665442     2233333333    356777


Q ss_pred             HHHhh
Q 040683          243 EMRRR  247 (251)
Q Consensus       243 Emr~~  247 (251)
                      .|||+
T Consensus       416 ~~~~k  420 (1072)
T KOG0979|consen  416 LNRQK  420 (1072)
T ss_pred             hhhhh
Confidence            88876

>PRK04863 mukB cell division protein MukB; Provisional

Probab=83.91  E-value=61  Score=36.32  Aligned_cols=26  Identities=15%  Similarity=0.483  Sum_probs=18.1

Q ss_pred             hhhhhh----HhHHHHHHHHHHHHHHHHhh
Q 040683          222 GVRELC----FIERECEELVKRFSREMRRR  247 (251)
Q Consensus       222 GVrEL~----FIeREce~LV~rF~~Emr~~  247 (251)
                      +++++|    |=..|.+.....|...+...
T Consensus       425 ~~~~~~~~~~~SdEeLe~~LenF~aklee~  454 (1486)
T PRK04863        425 RAKQLCGLPDLTADNAEDWLEEFQAKEQEA  454 (1486)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            666776    44567888888888776543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=83.56  E-value=42  Score=32.91  Aligned_cols=50  Identities=26%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             HHHHHHHHhhhhhhHhh--hhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHH
Q 040683          196 EYDELWERVGEIDDKML--RRETVAMSIGVRELCFIERECEELVKRFSREMR  245 (251)
Q Consensus       196 Eyneiweki~EIeD~il--RrET~amSiGVrEL~FIeREce~LV~rF~~Emr  245 (251)
                      .|+.+.+.+.++.+.+.  ..+-..+.=.+..|.=-|.++.+-++.|...++
T Consensus       377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~  428 (569)
T PRK04778        377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH  428 (569)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555444432  233455555667777788888888888877665

>PRK01156 chromosome segregation protein; Provisional

Probab=80.60  E-value=69  Score=32.46  Aligned_cols=73  Identities=12%  Similarity=0.163  Sum_probs=34.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh--------hhhhHHHHHHHHhhHHHHHHHHHHhhhhhhH
Q 040683          139 SGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE--------KVGAEELLDMIGTMEREYDELWERVGEIDDK  210 (251)
Q Consensus       139 s~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~--------~~~~~~L~e~m~~~E~Eyneiweki~EIeD~  210 (251)
                      ..++.++..|.++++.+.++-.++-.+.-+++.++..++..        ...++++.+.++.+.++-.++-.+++++...
T Consensus       359 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~i~~l~~~i~~l~~~  438 (895)
T PRK01156        359 EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALREN  438 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555556666666555555555544444443332111        1223444444455555555555555555444


Q ss_pred             h
Q 040683          211 M  211 (251)
Q Consensus       211 i  211 (251)
                      +
T Consensus       439 ~  439 (895)
T PRK01156        439 L  439 (895)
T ss_pred             H
Confidence            3

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	9e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 9e-09
 Identities = 42/279 (15%), Positives = 95/279 (34%), Gaps = 75/279 (26%)

Query: 27  GKTESAISV------TKTLVYAVFCIAVS--FSPFKVPAIAATVASEVKLDNKGREIETE 78
           GKT  A+ V         + + +F + +    SP  V  +   +  ++  +   R  +  
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS-DHS 220

Query: 79  VVFKEKDHEYADYTRRLLETVS--NLLKIVEEVRGGNGDVKRAKLALKA--------VKM 128
              K + H      RRLL++    N L ++        +V+ AK    A        +  
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLL-------NVQNAKA-WNAFNLSCKILLTT 272

Query: 129 RKEELQDEIMSGMYTELR----ELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGAE 184
           R +++ D + +   T +      + L  +++   + K +D         + L  E +   
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD------CRPQDLPREVLTTN 326

Query: 185 EL-LDMIGTMEREYDELWERVGEID-DKMLRRETVAMSIGV------REL---CFI---- 229
              L +I    R+    W+    ++ DK+     +  S+ V      R++     +    
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKL--TTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 230 ----------------ERECEELVKRFSREMRRRS-IER 251
                           + +   +V     ++ + S +E+
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVN----KLHKYSLVEK 419

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 30/201 (14%)

Query: 76  ETEVVFKEKDHEYADYTRRLLETVSNLLKIVEEVRGGNGDVKRAKLALKAVKMRKEELQD 135
           E + +   KD      T RL  T+  L K  E V+    +V R         ++ E+ Q 
Sbjct: 50  EIDHIIMSKDAVSG--TLRLFWTL--LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105

Query: 136 EIMSGMYTELRELRL--EKEKLVKRVGKIIDEVLMVQTEIESLK-------------GEK 180
            +M+ MY E R+ RL  + +   K     +   L ++  +  L+             G+ 
Sbjct: 106 SMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164

Query: 181 VGAEELLDMIGTMEREYDEL-WERVGEIDD---------KMLRRETVAMSIGVRELCFIE 230
             A ++        +   ++ W  +   +          K+L +     +        I+
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 231 RECEELVKRFSREMRRRSIER 251
                +     R ++ +  E 
Sbjct: 225 LRIHSIQAELRRLLKSKPYEN 245

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 43.8 bits (102), Expect = 9e-06
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 24/51 (47%)

Query: 14 EKNSLPEVSGTLKGKTESAISVTKTLVYAVFCIAVSFSPFKVPAIA--ATV 62
          EK +L ++  +LK             +YA             PA+A  AT+
Sbjct: 18 EKQALKKLQASLK-------------LYA---------DDSAPALAIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	89.46
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	84.63
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	83.59

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=89.46  E-value=8.7  Score=32.32  Aligned_cols=106  Identities=16%  Similarity=0.158  Sum_probs=49.9

Q ss_pred             HHHHHHHHhhhchHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhh----hhhhHHHHHHHHh
Q 040683          118 RAKLALKAVKMRKEELQDEIMSG-MYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGE----KVGAEELLDMIGT  192 (251)
Q Consensus       118 ~v~~ALk~VKlkKeelQ~EIms~-ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~----~~~~~~L~e~m~~  192 (251)
                      +.+.-+..++.+-...++..++. =..|+..|.+|.+.+..|-...=++.+.+..+.+.+-..    ...++.+...+..
T Consensus        64 ~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~  143 (256)
T 3na7_A           64 KNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALE  143 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444442 345666666666666666666666666555555543222    2223333333333


Q ss_pred             hHHHHHHHHHHh-hhhhhHhhhhhhhhhhhhh
Q 040683          193 MEREYDELWERV-GEIDDKMLRRETVAMSIGV  223 (251)
Q Consensus       193 ~E~Eyneiweki-~EIeD~ilRrET~amSiGV  223 (251)
                      ...+++.....+ .+++....+|+.++-+|.-
T Consensus       144 ~~~~~~~~~~e~~~e~~~l~~~r~~l~~~i~~  175 (256)
T 3na7_A          144 LESLVENEVKNIKETQQIIFKKKEDLVEKTEP  175 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            333333333333 2233333456655555543

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=84.63  E-value=9.8  Score=29.52  Aligned_cols=90  Identities=22%  Similarity=0.334  Sum_probs=47.0

Q ss_pred             HHHHHHhcCCCChHHHHHHHHHhhhchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhh
Q 040683          104 KIVEEVRGGNGDVKRAKLALKAVKMRKEELQDEIMSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQTEIESLKGEKVGA  183 (251)
Q Consensus       104 k~ieeVR~gngd~k~v~~ALk~VKlkKeelQ~EIms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~krE~ekLlg~~~~~  183 (251)
                      ++.++++.-+-.++.++..|......+.+|+.. +..|-.+.-+|.                 ..++.|.+.|.-..+..
T Consensus        10 ~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~-~~~l~~Ek~~L~-----------------~qL~~E~~~l~e~EE~~   71 (129)
T 2fxo_A           10 EREKEMASMKEEFTRLKEALEKSEARRKELEEK-MVSLLQEKNDLQ-----------------LQVQAEQDNLADAEERC   71 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-----------------HHHHHHHHHHHhHHHHH
Confidence            455666666666777777776666666655544 222222222222                 22233444444444455


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhhhhHh
Q 040683          184 EELLDMIGTMEREYDELWERVGEIDDKM  211 (251)
Q Consensus       184 ~~L~e~m~~~E~Eyneiweki~EIeD~i  211 (251)
                      ++|-.+-..||..+.++-+++++.||+.
T Consensus        72 ~~L~~~k~eLe~~l~el~~rleeeee~~   99 (129)
T 2fxo_A           72 DQLIKNKIQLEAKVKEMNKRLEDEEEMN   99 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555556666666666666655543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=83.59  E-value=22  Score=36.42  Aligned_cols=32  Identities=9%  Similarity=0.210  Sum_probs=27.7

Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhhhhhHhhhhh
Q 040683          184 EELLDMIGTMEREYDELWERVGEIDDKMLRRE  215 (251)
Q Consensus       184 ~~L~e~m~~~E~Eyneiweki~EIeD~ilRrE  215 (251)
                      ++|++.+..|+++=..+-..+++++..+...+
T Consensus      1019 ~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A         1019 HETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999997777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1seta1	110	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	80.55

>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Seryl-tRNA synthetase (SerRS)
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=80.55  E-value=3  Score=29.30  Aligned_cols=33  Identities=12%  Similarity=0.212  Sum_probs=21.8

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040683          138 MSGMYTELRELRLEKEKLVKRVGKIIDEVLMVQ  170 (251)
Q Consensus       138 ms~ly~elr~lkkeke~L~~Ra~kI~d~~l~~k  170 (251)
                      +-.||.+.|++..+.+.|..+--.+..++-+++
T Consensus        30 i~~ld~~rr~l~~~~e~l~~~rN~~sk~i~k~~   62 (110)
T d1seta1          30 LLALDREVQELKKRLQEVQTERNQVAKRVPKAP   62 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            345677777777777777777666665554443