Citrus Sinensis ID: 040690

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-----
PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVPA
ccHHHHHccccEEEccHHHHHHcHHHHHHHHHHcccEEEcccccHHHHHHHHcccccccccEEEEEEcccccHHcccccHHHHHccccccccccccccccccccHHHHHHHHHHccccccccEEEEEccccccHHcEEcccccEEEcccccccHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccc
HHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHccEEEEccHHHHHHHHcccccccccccEEEEEcccccHHHHccccHHHHccccccccccHHHHHHHHcHHHHHHHHHHHHHHcccHHHEEEEEcccccEEEEEEEccccEEEEEcccccHHHHHHHHHccccccccccccccccHHHcccEccEcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccccc
PTVAAIEAGKDIALANKEtmiaggpfilplahkhnikflpadsehSAVFQCIQGLPEGALWRIILTAsdwpvekmKEITVADAlkhpiwtlgkkitidsATLFNKGLEVIEAHYLfgagydnieivihPQSILHSMietqdssvigqlgwadmripllytmswperiycsevtwppldlaklgsltfmapdtakvpsvnlcyaagraggTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKhradlvsspsledilhydGWAREYTASLQlssgrnpvpa
PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRadlvsspsledILHYDGWAREYTAslqlssgrnpvpa
PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVPA
*********KDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTA*************
PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQ**********
PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASL***********
PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSS*******
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PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTASDWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVPA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query285 2.2.26 [Sep-21-2011]
Q9XFS9477 1-deoxy-D-xylulose 5-phos yes no 1.0 0.597 0.803 1e-137
Q8W250473 1-deoxy-D-xylulose 5-phos yes no 0.996 0.600 0.809 1e-137
Q9XES0470 1-deoxy-D-xylulose 5-phos N/A no 0.985 0.597 0.770 1e-130
Q3MDL2398 1-deoxy-D-xylulose 5-phos yes no 0.964 0.690 0.638 1e-105
B0CD21401 1-deoxy-D-xylulose 5-phos yes no 0.975 0.693 0.638 1e-104
Q8YP49399 1-deoxy-D-xylulose 5-phos yes no 0.964 0.689 0.631 1e-104
B7K5G6398 1-deoxy-D-xylulose 5-phos yes no 0.933 0.668 0.649 1e-104
B8HVK1387 1-deoxy-D-xylulose 5-phos yes no 0.933 0.687 0.638 1e-102
B2ITX3398 1-deoxy-D-xylulose 5-phos yes no 0.964 0.690 0.621 1e-102
B1WNP5398 1-deoxy-D-xylulose 5-phos yes no 0.933 0.668 0.675 2e-99
>sp|Q9XFS9|DXR_ARATH 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=DXR PE=2 SV=2 Back     alignment and function desciption
 Score =  488 bits (1257), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/290 (80%), Positives = 261/290 (90%), Gaps = 5/290 (1%)

Query: 1   PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
           PTVAAIEAGKDIALANKET+IAGGPF+LPLA+KHN+K LPADSEHSA+FQCIQGLPEGAL
Sbjct: 188 PTVAAIEAGKDIALANKETLIAGGPFVLPLANKHNVKILPADSEHSAIFQCIQGLPEGAL 247

Query: 61  WRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
            +IILTAS     DWPVEK+KE+ VADALKHP W +GKKIT+DSATLFNKGLEVIEAHYL
Sbjct: 248 RKIILTASGGAFRDWPVEKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYL 307

Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
           FGA YD+IEIVIHPQSI+HSMIETQDSSV+ QLGW DMR+P+LYTMSWP+R+ CSEVTWP
Sbjct: 308 FGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRLPILYTMSWPDRVPCSEVTWP 367

Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
            LDL KLGSLTF  PD  K PS++L YAAGRAGGTMTGVLSAANEKAVE+F++ KISYLD
Sbjct: 368 RLDLCKLGSLTFKKPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLD 427

Query: 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVPA 285
           IFKVVELTCDKHR +LV+SPSLE+I+HYD WAREY A++QLSSG  PV A
Sbjct: 428 IFKVVELTCDKHRNELVTSPSLEEIVHYDLWAREYAANVQLSSGARPVHA 477
Enzyme of the plastid non-mevalonate pathway for isoprenoid biosynthesis that catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP). Required for chloroplast development.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 6EC: 7
>sp|Q8W250|DXR_ORYSJ 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=DXR PE=2 SV=2 Back     alignment and function description
>sp|Q9XES0|DXR_MENPI 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic OS=Mentha piperita GN=DXR PE=2 SV=2 Back     alignment and function description
>sp|Q3MDL2|DXR_ANAVT 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=dxr PE=3 SV=1 Back     alignment and function description
>sp|B0CD21|DXR_ACAM1 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Acaryochloris marina (strain MBIC 11017) GN=dxr PE=3 SV=1 Back     alignment and function description
>sp|Q8YP49|DXR_NOSS1 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dxr PE=3 SV=1 Back     alignment and function description
>sp|B7K5G6|DXR_CYAP8 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 8801) GN=dxr PE=3 SV=1 Back     alignment and function description
>sp|B8HVK1|DXR_CYAP4 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=dxr PE=3 SV=1 Back     alignment and function description
>sp|B2ITX3|DXR_NOSP7 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dxr PE=3 SV=1 Back     alignment and function description
>sp|B1WNP5|DXR_CYAA5 1-deoxy-D-xylulose 5-phosphate reductoisomerase OS=Cyanothece sp. (strain ATCC 51142) GN=dxr PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
255540669 467 1-deoxy-D-xylulose 5-phosphate reductois 0.992 0.605 0.809 1e-137
357136090 473 PREDICTED: 1-deoxy-D-xylulose 5-phosphat 1.0 0.602 0.803 1e-136
224133538 471 predicted protein [Populus trichocarpa] 0.992 0.600 0.805 1e-136
224119346 471 predicted protein [Populus trichocarpa] 0.992 0.600 0.809 1e-136
189017040 426 putative chloroplast 1-deoxy-D-xylulose 0.992 0.664 0.809 1e-136
164604988 471 1-deoxy-D-xylulose-5-phosphate reductois 0.992 0.600 0.798 1e-136
374498905 472 1-deoxy-D-xylulose-5-phosphate reductois 0.992 0.599 0.805 1e-136
334188583 497 1-deoxy-D-xylulose 5-phosphate reductois 1.0 0.573 0.803 1e-136
399514684 473 1-deoxy-D-xylulose-5-phosphate reductois 0.992 0.598 0.809 1e-136
91241600 471 1-deoxy-D-xylulose 5-phosphate reductois 0.992 0.600 0.798 1e-136
>gi|255540669|ref|XP_002511399.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223550514|gb|EEF52001.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  493 bits (1268), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/288 (80%), Positives = 261/288 (90%), Gaps = 5/288 (1%)

Query: 1   PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
           PTVAAIEAGKDI LANKET+IAGGPF+LPLAHK+N+K LPADSEHSA+FQCIQGLPEGAL
Sbjct: 178 PTVAAIEAGKDICLANKETLIAGGPFVLPLAHKYNVKILPADSEHSAIFQCIQGLPEGAL 237

Query: 61  WRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
            RIILTAS     DWPVEK+K++ VADALKHP W +GKKIT+DSATLFNKGLEVIEAHYL
Sbjct: 238 RRIILTASGGAFRDWPVEKLKDVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEAHYL 297

Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
           FGA YDNIEIVIHPQSI+HSM+ET+DSSV+ QLGW DMRIP+LYTMSWP+RIYCSE+TWP
Sbjct: 298 FGADYDNIEIVIHPQSIIHSMVETEDSSVLAQLGWPDMRIPILYTMSWPDRIYCSEITWP 357

Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
            LDL KLGSLTF APD  K PS+ L YAAGRAGGTMTGVLSAANEKAVE+F++ +ISYLD
Sbjct: 358 RLDLCKLGSLTFKAPDNVKYPSMELAYAAGRAGGTMTGVLSAANEKAVEMFIDEQISYLD 417

Query: 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPV 283
           IFK+VELTCDKHRA+LV+SPSLE+I+HYD WAREY ASLQ SSG +PV
Sbjct: 418 IFKIVELTCDKHRAELVTSPSLEEIIHYDLWAREYAASLQPSSGLSPV 465

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357136090|ref|XP_003569639.1| PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|224133538|ref|XP_002321599.1| predicted protein [Populus trichocarpa] gi|222868595|gb|EEF05726.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224119346|ref|XP_002318048.1| predicted protein [Populus trichocarpa] gi|222858721|gb|EEE96268.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|189017040|gb|ACD70397.1| putative chloroplast 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|164604988|dbj|BAF98290.1| 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|374498905|gb|AEZ53171.1| 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Rosa rugosa] Back     alignment and taxonomy information
>gi|334188583|ref|NP_001190600.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Arabidopsis thaliana] gi|332010275|gb|AED97658.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|399514684|gb|AFP43697.1| 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Eriobotrya japonica] Back     alignment and taxonomy information
>gi|91241600|gb|ABD92702.1| 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis] gi|94421688|gb|ABF18928.1| putative 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Hevea brasiliensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query285
TIGR_CMR|BA_3959380 BA_3959 "1-deoxy-D-xylulose 5- 0.933 0.7 0.450 2.3e-62
TIGR_CMR|GSU_1915386 GSU_1915 "1-deoxy-D-xylulose 5 0.943 0.696 0.473 3e-62
TIGR_CMR|CHY_1778384 CHY_1778 "1-deoxy-D-xylulose 5 0.901 0.669 0.491 2.7e-59
TIGR_CMR|BA_3409385 BA_3409 "1-deoxy-D-xylulose 5- 0.943 0.698 0.451 3.5e-59
TIGR_CMR|DET_0371377 DET_0371 "1-deoxy-D-xylulose 5 0.943 0.713 0.451 1.1e-57
GENEDB_PFALCIPARUM|PF14_0641488 PF14_0641 "1-deoxy-D-xylulose 0.842 0.491 0.391 4.8e-56
UNIPROTKB|Q8IKG4488 DXR "1-deoxy-D-xylulose 5-phos 0.842 0.491 0.391 4.8e-56
TIGR_CMR|SPO_1667395 SPO_1667 "1-deoxy-D-xylulose 5 0.933 0.673 0.411 3.4e-54
TIGR_CMR|ECH_0557386 ECH_0557 "1-deoxy-D-xylulose 5 0.936 0.691 0.398 2.5e-49
TIGR_CMR|SO_1635396 SO_1635 "1-deoxy-D-xylulose 5- 0.943 0.679 0.415 2.5e-49
TIGR_CMR|BA_3959 BA_3959 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 124/275 (45%), Positives = 186/275 (67%)

Query:     1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
             PT+ AIEA K I +ANKET++  G  ++  A KHN+  LP DSEHSA+FQC+ G  E  +
Sbjct:   105 PTLRAIEAKKTIGIANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCLNGENEKRI 164

Query:    61 WRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
              R+I+TAS     D   +++  +TV DAL+HP W++G KITIDSAT+ NKGLEVIEAH+L
Sbjct:   165 SRLIITASGGSFRDKTRDELHHVTVEDALRHPNWSMGSKITIDSATMMNKGLEVIEAHWL 224

Query:   116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
             FG  Y+ I++V+H +SI+HSM+E +D SV+ QLG  DMR+P+ Y +++P+R+  S+    
Sbjct:   225 FGIPYEQIDVVLHKESIIHSMVEFEDRSVMAQLGSPDMRVPIQYALTYPDRLPLSDTK-- 282

Query:   176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
              L+L ++G+L F   +  +   +   Y AG+AGG+M  V++AANE AVE F+  +I +L 
Sbjct:   283 QLNLWEIGTLHFEKMNQERFRCLRFAYEAGKAGGSMPAVMNAANEVAVEAFLQKRIGFLT 342

Query:   236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREY 270
             +  ++E   + H  ++++ PSLE+IL  D   R +
Sbjct:   343 VEDLIEKAMNHH--NVIARPSLEEILEIDAATRRF 375
GO:0008299 "isoprenoid biosynthetic process" evidence=ISS
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=ISS
TIGR_CMR|GSU_1915 GSU_1915 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1778 CHY_1778 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3409 BA_3409 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0371 DET_0371 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF14_0641 PF14_0641 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IKG4 DXR "1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1667 SPO_1667 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0557 ECH_0557 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1635 SO_1635 "1-deoxy-D-xylulose 5-phosphate reductoisomerase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8DK30DXR_THEEB1, ., 1, ., 1, ., 2, 6, 70.64150.95080.6561yesno
Q46JT6DXR_PROMT1, ., 1, ., 1, ., 2, 6, 70.56640.93330.6456yesno
A5D2U3DXR_PELTS1, ., 1, ., 1, ., 2, 6, 70.53470.92280.6795yesno
Q7NID1DXR_GLOVI1, ., 1, ., 1, ., 2, 6, 70.57810.92980.6760yesno
Q319Z8DXR_PROM91, ., 1, ., 1, ., 2, 6, 70.55330.97890.6838yesno
Q7V6J8DXR_PROMM1, ., 1, ., 1, ., 2, 6, 70.54780.98940.6844yesno
Q3MDL2DXR_ANAVT1, ., 1, ., 1, ., 2, 6, 70.63850.96490.6909yesno
Q3AZ20DXR_SYNS91, ., 1, ., 1, ., 2, 6, 70.54150.98240.6714yesno
B7KAT5DXR_CYAP71, ., 1, ., 1, ., 2, 6, 70.64100.92980.6658yesno
Q31N26DXR_SYNE71, ., 1, ., 1, ., 2, 6, 70.60060.94730.6716yesno
B7K5G6DXR_CYAP81, ., 1, ., 1, ., 2, 6, 70.64960.93330.6683yesno
B0CD21DXR_ACAM11, ., 1, ., 1, ., 2, 6, 70.63880.97540.6932yesno
Q0IBN9DXR_SYNS31, ., 1, ., 1, ., 2, 6, 70.57340.93330.6394yesno
A2C3T8DXR_PROM11, ., 1, ., 1, ., 2, 6, 70.56640.93330.6456yesno
A2BXK2DXR_PROM51, ., 1, ., 1, ., 2, 6, 70.54350.93680.6528yesno
Q8YP49DXR_NOSS11, ., 1, ., 1, ., 2, 6, 70.63150.96490.6892yesno
Q2JM39DXR_SYNJB1, ., 1, ., 1, ., 2, 6, 70.60860.93330.6785yesno
C0ZF60DXR_BREBN1, ., 1, ., 1, ., 2, 6, 70.50180.92980.6937yesno
Q7V0W0DXR_PROMP1, ., 1, ., 1, ., 2, 6, 70.54000.93680.6608yesno
Q9XFS9DXR_ARATH1, ., 1, ., 1, ., 2, 6, 70.80341.00.5974yesno
Q7U8C3DXR_SYNPX1, ., 1, ., 1, ., 2, 6, 70.56140.98240.6845yesno
B2ITX3DXR_NOSP71, ., 1, ., 1, ., 2, 6, 70.62100.96490.6909yesno
Q7VB62DXR_PROMA1, ., 1, ., 1, ., 2, 6, 70.55030.97190.6723yesno
Q3AI71DXR_SYNSC1, ., 1, ., 1, ., 2, 6, 70.54810.98240.6746yesno
Q9RCT1DXR_SYNP61, ., 1, ., 1, ., 2, 6, 70.60060.94730.6716yesno
B8HVK1DXR_CYAP41, ., 1, ., 1, ., 2, 6, 70.63860.93330.6873yesno
A4J5Y5DXR_DESRM1, ., 1, ., 1, ., 2, 6, 70.50360.92630.6821yesno
Q3AUE4DXR_CHLCH1, ., 1, ., 1, ., 2, 6, 70.51820.92630.6910yesno
Q2JXQ9DXR_SYNJA1, ., 1, ., 1, ., 2, 6, 70.61310.92630.6734yesno
Q8W250DXR_ORYSJ1, ., 1, ., 1, ., 2, 6, 70.80960.99640.6004yesno
B1WNP5DXR_CYAA51, ., 1, ., 1, ., 2, 6, 70.67510.93330.6683yesno
B0JWW6DXR_MICAN1, ., 1, ., 1, ., 2, 6, 70.63880.97190.7102yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.921
4th Layer1.1.1.2670.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
BRADI2G00650.1
annotation not avaliable (473 aa)
(Brachypodium distachyon)
Predicted Functional Partners:
BRADI3G48080.2
annotation not avaliable (744 aa)
• ••  • 0.973
BRADI2G57260.1
annotation not avaliable (294 aa)
• •• •• 0.968
BRADI3G51750.1
annotation not avaliable (224 aa)
• •• •• 0.967
BRADI2G25550.1
annotation not avaliable (706 aa)
  •• •• 0.938
BRADI1G54890.1
annotation not avaliable (713 aa)
  •• •• 0.935
BRADI1G09710.1
annotation not avaliable (465 aa)
• •   • 0.931
BRADI2G55410.1
annotation not avaliable (215 aa)
•   • • 0.930
BRADI3G18310.1
annotation not avaliable (222 aa)
•     • 0.930
BRADI2G52610.1
annotation not avaliable (406 aa)
  ••  • 0.909
BRADI2G61710.1
annotation not avaliable (353 aa)
•  •  • 0.892

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
PLN02696454 PLN02696, PLN02696, 1-deoxy-D-xylulose-5-phosphate 0.0
PRK05447385 PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate 1e-151
COG0743385 COG0743, Dxr, 1-deoxy-D-xylulose 5-phosphate reduc 1e-136
PRK12464383 PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate 1e-119
TIGR00243389 TIGR00243, Dxr, 1-deoxy-D-xylulose 5-phosphate red 1e-118
pfam13288118 pfam13288, DXPR_C, DXP reductoisomerase C-terminal 2e-54
pfam0843684 pfam08436, DXP_redisom_C, 1-deoxy-D-xylulose 5-pho 5e-43
pfam02670129 pfam02670, DXP_reductoisom, 1-deoxy-D-xylulose 5-p 3e-09
>gnl|CDD|215374 PLN02696, PLN02696, 1-deoxy-D-xylulose-5-phosphate reductoisomerase Back     alignment and domain information 
 Score =  563 bits (1452), Expect = 0.0
 Identities = 224/290 (77%), Positives = 254/290 (87%), Gaps = 5/290 (1%)

Query: 1   PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
           PTVAAIEAGKDIALANKET+IAGGPF+LPLA KH +K LPADSEHSA+FQCIQGLPEG L
Sbjct: 165 PTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKILPADSEHSAIFQCIQGLPEGGL 224

Query: 61  WRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
            RIILTAS     DWPVEK+KE+ VADALKHP W++GKKIT+DSATL NKGLEVIEAHYL
Sbjct: 225 RRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLMNKGLEVIEAHYL 284

Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
           FGA YD+I+IVIHPQSI+HSM+ETQDSSV+ QLGW DMR+P+LYTMSWP+R+ CSE+TWP
Sbjct: 285 FGADYDDIDIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTMSWPDRVPCSEITWP 344

Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
            LDL KLGSLTF APD  K PS++L YAAGRAGGTMTGVLSAANEKAVE+F++ KI YLD
Sbjct: 345 RLDLCKLGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLD 404

Query: 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVPA 285
           IFKV+ELTC+ H+ +LV+SPSLEDILHYD WAREY A L  S G +PV A
Sbjct: 405 IFKVIELTCEAHKEELVTSPSLEDILHYDLWAREYAAELVESGGLSPVVA 454

Length = 454
>gnl|CDD|235472 PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional Back     alignment and domain information
>gnl|CDD|223814 COG0743, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|237107 PRK12464, PRK12464, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional Back     alignment and domain information
>gnl|CDD|161787 TIGR00243, Dxr, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Back     alignment and domain information
>gnl|CDD|222027 pfam13288, DXPR_C, DXP reductoisomerase C-terminal domain Back     alignment and domain information
>gnl|CDD|203943 pfam08436, DXP_redisom_C, 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal Back     alignment and domain information
>gnl|CDD|217176 pfam02670, DXP_reductoisom, 1-deoxy-D-xylulose 5-phosphate reductoisomerase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 285
PRK12464383 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P 100.0
COG0743385 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras 100.0
TIGR00243389 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomeras 100.0
PLN02696454 1-deoxy-D-xylulose-5-phosphate reductoisomerase 100.0
PRK05447385 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P 100.0
PF0843684 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate redu 100.0
PF13288121 DXPR_C: DXP reductoisomerase C-terminal domain; PD 100.0
PRK06349426 homoserine dehydrogenase; Provisional 90.41
PF03447117 NAD_binding_3: Homoserine dehydrogenase, NAD bindi 88.91
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.7e-127  Score=917.66  Aligned_cols=276  Identities=47%  Similarity=0.804  Sum_probs=264.1

Q ss_pred             ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhh
Q 040690            1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKM   75 (285)
Q Consensus         1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l   75 (285)
                      ||++|++.||+|||||||||||||+++++.++++|++|+|||||||||||||.|++.++|++||||||     ++|+++|
T Consensus       102 pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~~~~iiPVDSEHsAIfQ~L~~~~~~~v~kiiLTASGGpFr~~~~e~l  181 (383)
T PRK12464        102 PTIEALKAKKDIALANKETLVAAGHIVTDLAKQNGCRLIPVDSEHSAIFQCLNGENNKEIDKLIVTASGGAFRDKTREEM  181 (383)
T ss_pred             HHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHcCCeEEeechhHHHHHHHccCCCcccccEEEEECCCcccCCCCHHHH
Confidence            79999999999999999999999999999999999999999999999999999986678999999999     8999999


Q ss_pred             hcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCCcchH
Q 040690           76 KEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRI  155 (285)
Q Consensus        76 ~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~pDMr~  155 (285)
                      ++|||+|||+||||+||+||||||||||||||||||||||||+|+|||||||||||||||||+|.|||++||||.||||+
T Consensus       182 ~~vT~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~i~~d~I~vvIHPqSiVHsmVef~DGSv~aql~~pDMr~  261 (383)
T PRK12464        182 ATLTAKDALKHPNWLMGAKLTIDSATLMNKGFEVIEAHWLFDIPYEKIDVLIHKESIIHSLVEFIDGSVLAQLGAPDMRM  261 (383)
T ss_pred             hCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECCCCceeEEEEEcCccEEEEeCCCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHcCCCCCcc
Q 040690          156 PLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD  235 (285)
Q Consensus       156 PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVeaFL~gkI~F~d  235 (285)
                      ||+|||+||+|.+   ...++|||.++++|+|++||++|||||+|||+|+++||.+|+|||||||+||++||+|||+|+|
T Consensus       262 PI~yAL~yP~R~~---~~~~~ldl~~~~~L~F~~pD~~rfP~l~La~~a~~~gg~~p~vlNAANEvAV~aFL~~kI~F~d  338 (383)
T PRK12464        262 PIQYAFHYPTRLP---SSYEKLNLLEIGSLHFEKPDLEKFPCLQYAYEAGKIGGTTPAVLNAANEIANALFLKNRIAFFD  338 (383)
T ss_pred             HHHHHcCCccccC---CCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHhCCCceEEEEhhhHHHHHHHHcCCCCchh
Confidence            9999999999994   4689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 040690          236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSSGRNPVP  284 (285)
Q Consensus       236 I~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a~~~~~~~~~~~~~  284 (285)
                      |+++|+++|++++  ...++|||||+++|+|+|+++++++   +.-|.|
T Consensus       339 I~~ii~~~l~~~~--~~~~~sl~~i~~~d~~aR~~a~~~~---~~~~~~  382 (383)
T PRK12464        339 IEKTIYATLEAHH--NVKDPSLDDILEADAWARRYANQLL---IKKSAP  382 (383)
T ss_pred             HHHHHHHHHHhcc--ccCCCCHHHHHHHHHHHHHHHHHHH---hhCCCC
Confidence            9999999999996  3344599999999999999999976   444444

>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] Back     alignment and domain information
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase Back     alignment and domain information
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase Back     alignment and domain information
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional Back     alignment and domain information
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms [] Back     alignment and domain information
>PF13288 DXPR_C: DXP reductoisomerase C-terminal domain; PDB: 3A14_A 3A06_A 3IIE_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A 2JCX_A 2Y1G_A Back     alignment and domain information
>PRK06349 homoserine dehydrogenase; Provisional Back     alignment and domain information
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
1r0k_A388 Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate 6e-60
3au8_A488 Crystal Structure Of The Ternary Complex Of An Isom 6e-60
4gae_A426 Crystal Structure Of Plasmodium Dxr In Complex With 1e-59
3iie_A401 1-deoxy-d-xylulose 5-phosphate Reductoisomerase Fro 2e-51
1k5h_A398 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase Len 4e-51
2egh_A424 Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate 4e-51
1t1r_A398 Crystal Structure Of The Reductoisomerase Complexed 5e-51
1q0l_A406 Crystal Structure Of Dxr In Complex With Fosmidomyc 5e-51
3r0i_A410 Ispc In Complex With An N-Methyl-Substituted Hydrox 5e-51
3anl_A420 Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate 5e-51
2c82_A413 X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate R 2e-47
2jcv_A398 X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate R 2e-47
2jcx_A398 X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phos 2e-46
1jvs_A400 Crystal Structure Of 1-deoxy-d-xylulose 5-phosphate 2e-46
1q0h_A406 Crystal Structure Of Selenomethionine-Labelled Dxr 2e-46
3a06_A376 Crystal Structure Of Dxr From Thermooga Maritia, In 4e-38
>pdb|1R0K|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From Zymomonas Mobilis Length = 388 Back     alignment and structure 
Iteration: 1

 Score =  227 bits (579), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 118/281 (41%), Positives = 173/281 (61%), Gaps = 10/281 (3%)
Query: 2   TVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALW 61
           T+AAI  GK +ALANKE++++ G  ++    +H    LP DSEH+A+FQC        + 
Sbjct: 110 TLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVR 169
Query: 62  RIILTASDWPVE-----KMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLF 116
           RII+TAS  P       +M  +T   A++HP W++G KI+IDSAT+ NKGLE+IEA +LF
Sbjct: 170 RIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAFHLF 229
Query: 117 GAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWPP 176
               +  EI++HPQS++HSM+E  D S++ Q+G  DMR P+ +T++WP+R+   E     
Sbjct: 230 QIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRM---ETPAES 286
Query: 177 LDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLDI 236
           LD  KL  + F APD  + P++ L   + ++GG    V++AANE AV  F++ KI +LDI
Sbjct: 287 LDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDI 346
Query: 237 FKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLS 277
            K+VE T D +     +  SLED+   D  AR   A+L  S
Sbjct: 347 AKIVEKTLDHYTP--ATPSSLEDVFAIDNEARIQAAALMES 385
>pdb|3AU8|A Chain A, Crystal Structure Of The Ternary Complex Of An Isomerase Length = 488 Back     alignment and structure
>pdb|4GAE|A Chain A, Crystal Structure Of Plasmodium Dxr In Complex With A Pyridine- Containing Inhibitor Length = 426 Back     alignment and structure
>pdb|3IIE|A Chain A, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From Yersinia Pestis. Length = 401 Back     alignment and structure
>pdb|1K5H|A Chain A, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase Length = 398 Back     alignment and structure
>pdb|2EGH|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase Complexed With A Magnesium Ion, Nadph And Fosmidomycin Length = 424 Back     alignment and structure
>pdb|1T1R|A Chain A, Crystal Structure Of The Reductoisomerase Complexed With A Bisphosphonate Length = 398 Back     alignment and structure
>pdb|1Q0L|A Chain A, Crystal Structure Of Dxr In Complex With Fosmidomycin Length = 406 Back     alignment and structure
>pdb|3R0I|A Chain A, Ispc In Complex With An N-Methyl-Substituted Hydroxamic Acid Length = 410 Back     alignment and structure
>pdb|3ANL|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase (Dxr) Complexed With Pyridin-2-Ylmethylphosphonic Acid Length = 420 Back     alignment and structure
>pdb|2C82|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase, Dxr, Rv2870c, From Mycobacterium Tuberculosis Length = 413 Back     alignment and structure
>pdb|2JCV|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase, Dxr, Rv2870c, From Mycobacterium Tuberculosis, In Complex With Fosmidomycin And Nadph Length = 398 Back     alignment and structure
>pdb|2JCX|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase, Dxr, Rv2870c, From Mycobacterium Tuberculosis, In Complex With Fosmidomycin And Nadph Length = 398 Back     alignment and structure
>pdb|1JVS|A Chain A, Crystal Structure Of 1-deoxy-d-xylulose 5-phosphate Reductoisomerase; A Target Enzyme For Antimalarial Drugs Length = 400 Back     alignment and structure
>pdb|1Q0H|A Chain A, Crystal Structure Of Selenomethionine-Labelled Dxr In Complex With Fosmidomycin Length = 406 Back     alignment and structure
>pdb|3A06|A Chain A, Crystal Structure Of Dxr From Thermooga Maritia, In Complex Fosmidomycin And Nadph Length = 376 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query285
1r0k_A388 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N 1e-163
2y1e_A398 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o 1e-162
1q0q_A406 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o 1e-160
3au8_A488 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N 1e-158
3a06_A376 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M 1e-153
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* Length = 388 Back     alignment and structure
 Score =  457 bits (1178), Expect = e-163
 Identities = 115/279 (41%), Positives = 171/279 (61%), Gaps = 10/279 (3%)

Query: 1   PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGAL 60
            T+AAI  GK +ALANKE++++ G  ++    +H    LP DSEH+A+FQC        +
Sbjct: 109 ATLAAIRKGKTVALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYV 168

Query: 61  WRIILTAS-----DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYL 115
            RII+TAS        + +M  +T   A++HP W++G KI+IDSAT+ NKGLE+IEA +L
Sbjct: 169 RRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAFHL 228

Query: 116 FGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWADMRIPLLYTMSWPERIYCSEVTWP 175
           F    +  EI++HPQS++HSM+E  D S++ Q+G  DMR P+ +T++WP+R+        
Sbjct: 229 FQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRMETP---AE 285

Query: 176 PLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVELFVNGKISYLD 235
            LD  KL  + F APD  + P++ L   + ++GG    V++AANE AV  F++ KI +LD
Sbjct: 286 SLDFTKLRQMDFEAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLD 345

Query: 236 IFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASL 274
           I K+VE T D +     +  SLED+   D  AR   A+L
Sbjct: 346 IAKIVEKTLDHY--TPATPSSLEDVFAIDNEARIQAAAL 382
>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A Length = 398 Back     alignment and structure
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A Length = 406 Back     alignment and structure
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A* Length = 488 Back     alignment and structure
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* Length = 376 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
1q0q_A406 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o 100.0
2y1e_A398 1-deoxy-D-xylulose 5-phosphate reductoisomerase; o 100.0
3au8_A488 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N 100.0
3a06_A376 1-deoxy-D-xylulose 5-phosphate reductoisomerase; M 100.0
1r0k_A388 1-deoxy-D-xylulose 5-phosphate reductoisomerase; N 100.0
3do5_A327 HOM, homoserine dehydrogenase; NP_069768.1, putati 94.13
3ing_A325 Homoserine dehydrogenase; NP_394635.1, structural 94.11
3upl_A446 Oxidoreductase; rossmann fold, NADPH binding; 1.50 93.21
3mtj_A444 Homoserine dehydrogenase; rossmann-fold, PSI, MCSG 92.66
3c8m_A331 Homoserine dehydrogenase; structural genomics, APC 84.82
3oqb_A383 Oxidoreductase; structural genomics, protein struc 84.79
3i23_A349 Oxidoreductase, GFO/IDH/MOCA family; structural ge 83.4
3o9z_A312 Lipopolysaccaride biosynthesis protein WBPB; oxido 82.78
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A Back     alignment and structure
Probab=100.00  E-value=6e-129  Score=933.57  Aligned_cols=273  Identities=41%  Similarity=0.656  Sum_probs=263.5

Q ss_pred             ChHHHHHcCCceeeecccchhcccccchHHHhhcCCeEeeCCchhhHHHHHh----cCC------CCCccceEEEecc--
Q 040690            1 PTVAAIEAGKDIALANKETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCI----QGL------PEGALWRIILTAS--   68 (285)
Q Consensus         1 pt~~al~~gk~iaLANKEslV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L----~~~------~~~~v~~iilTAS--   68 (285)
                      ||++|+++||+|||||||||||||+++++.++++|++|+|||||||||||||    .|+      +..+|+|||||||  
T Consensus       117 PTlaAi~aGK~iaLANKEsLV~aG~lv~~~a~~~~~~ilPVDSEHsAIfQ~L~~~~~g~~~~~~~~~~~V~kiiLTASGG  196 (406)
T 1q0q_A          117 PTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTGSGG  196 (406)
T ss_dssp             HHHHHHHTTCEEEECCHHHHHHHTHHHHHHHHHHTCEEEECSHHHHHHHHTSCHHHHTTTTTSCTGGGTEEEEEEEECCC
T ss_pred             HHHHHHHCCCeEEEechHHHHhchHHHHHHHHHcCCeEEEecchHHHHHHHcccccCCccccccCCcccccEEEEECCCc
Confidence            7999999999999999999999999999999999999999999999999999    876      4456999999999  


Q ss_pred             ---CCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEE
Q 040690           69 ---DWPVEKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVI  145 (285)
Q Consensus        69 ---~~~~~~l~~vt~~~Al~HP~W~MG~KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~  145 (285)
                         ++|+++|++|||+|||+||||+||+||||||||||||||||||||||||+|+|+|||||||||||||||+|.|||++
T Consensus       197 PFR~~~~e~L~~vT~eqAl~HPnWsMG~KITIDSATmmNKGLEvIEA~~LF~~~~d~I~VvVHPQSiIHSmVef~DGSv~  276 (406)
T 1q0q_A          197 PFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVL  276 (406)
T ss_dssp             TTTTSCGGGGGGCCHHHHHCCSSCCCCHHHHHHHHHTHHHHHHHHHHHHHHTCCGGGEEEEECTTCCEEEEEEETTSCEE
T ss_pred             ccCCCCHHHHhCCCHHHHhcCCCccCCCeeeehHHhHHhhhHHHHHHHHHcCCCHHHeEEEECCCCceeEEEEEcCCcEE
Confidence               89999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCcchHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHH
Q 040690          146 GQLGWADMRIPLLYTMSWPERIYCSEVTWPPLDLAKLGSLTFMAPDTAKVPSVNLCYAAGRAGGTMTGVLSAANEKAVEL  225 (285)
Q Consensus       146 a~~~~pDMr~PI~~AL~~P~r~~~~~~~~~~ld~~~~~~L~F~~pD~~rFP~l~LA~~a~~~g~~~~~vlNAANEvAVea  225 (285)
                      ||||.||||+||+|||+||+|.+   ...++|||.++++|||++||++|||||+|||+|++.||++|+|||||||+||++
T Consensus       277 AQlg~PDMrlPIayAL~~P~R~~---~~~~~lDl~~~~~LtF~~pD~~rFP~L~LA~~a~~~Gg~~p~vlNAANEvAV~a  353 (406)
T 1q0q_A          277 AQLGEPDMRTPIAHTMAWPNRVN---SGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAA  353 (406)
T ss_dssp             EEECCSCTHHHHHHHHHTTSCCC---CSCCCCCTTTCCCBCCBCCCTTTCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCcHHHHHHHcCCccCCC---CCCCCCCCCcCCCcEEeCCChhhCcHHHHHHHHHhcCCCceEeeEHHHHHHHHH
Confidence            99999999999999999999994   578999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCccHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Q 040690          226 FVNGKISYLDIFKVVELTCDKHRADLVSSPSLEDILHYDGWAREYTASLQLSS  278 (285)
Q Consensus       226 FL~gkI~F~dI~~vV~~~Le~~~~~~~~~~sLedIl~iD~~aR~~a~~~~~~~  278 (285)
                      ||+|||+|+||+++|+++|+++.  ...+.|+|||+++|+|||++|++++..+
T Consensus       354 FL~~~I~F~dI~~ii~~~l~~~~--~~~~~sle~il~~D~~aR~~a~~~~~~~  404 (406)
T 1q0q_A          354 FLAQQIRFTDIAALNLSVLEKMD--MREPQCVDDVLSVDANAREVARKEVMRL  404 (406)
T ss_dssp             HHTTSSCTTHHHHHHHHHHHHCC--CCCCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCcchHHHHHHHHHHhcc--CCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999986  4456799999999999999999988665
>2y1e_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase, DOXP/MEP pathway; 1.65A {Mycobacterium tuberculosis} PDB: 2jcv_A* 2jcz_A* 2jd2_A 2jd1_A 2y1d_A* 2y1c_A 2y1f_A* 2y1g_A* 3ras_A* 4a03_A* 4aic_A* 2jcx_A* 2jcy_A 2jd0_A* 2c82_A Back     alignment and structure
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding; HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A* 3aua_A* Back     alignment and structure
>3a06_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; MEP pathway, isoprene biosynthesis, metal- NADP, oxidoreductase; HET: NDP; 2.00A {Thermotoga maritima} PDB: 3a14_A* Back     alignment and structure
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A* Back     alignment and structure
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} Back     alignment and structure
>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* Back     alignment and structure
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} Back     alignment and structure
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* Back     alignment and structure
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} Back     alignment and structure
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Back     alignment and structure
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 285
d1q0qa3149 d.81.1.3 (A:126-274) 1-deoxy-D-xylulose-5-phosphat 3e-44
d1r0ka3138 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphat 2e-40
d1q0qa198 a.69.3.1 (A:301-398) 1-deoxy-D-xylulose-5-phosphat 2e-29
d1r0ka195 a.69.3.1 (A:291-385) 1-deoxy-D-xylulose-5-phosphat 1e-28
d1r0ka2150 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-p 2e-08
d1q0qa2151 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-p 1e-07
d1t1ra326 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate 7e-05
>d1q0qa3 d.81.1.3 (A:126-274) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} Length = 149 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

 Score =  145 bits (366), Expect = 3e-44
 Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 15/148 (10%)

Query: 18  ETMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQG----------LPEGALWRIILTA 67
           E+++  G   +    +   + LP DSEH+A+FQ +            L +  +  I+LT 
Sbjct: 1   ESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSILLTG 60

Query: 68  SDWPV-----EKMKEITVADALKHPIWTLGKKITIDSATLFNKGLEVIEAHYLFGAGYDN 122
           S  P        +  +T   A +HP W++G+KI++DSAT+ NKGLE IEA +LF A    
Sbjct: 61  SGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNASASQ 120

Query: 123 IEIVIHPQSILHSMIETQDSSVIGQLGW 150
           +E++IHPQS++HSM+  QD SV+ QLG 
Sbjct: 121 MEVLIHPQSVIHSMVRYQDGSVLAQLGE 148
>d1r0ka3 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} Length = 138 Back     information, alignment and structure
>d1q0qa1 a.69.3.1 (A:301-398) 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 98 Back     information, alignment and structure
>d1r0ka1 a.69.3.1 (A:291-385) 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain {Zymomonas mobilis [TaxId: 542]} Length = 95 Back     information, alignment and structure
>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} Length = 150 Back     information, alignment and structure
>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} Length = 151 Back     information, alignment and structure
>d1t1ra3 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} Length = 26 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query285
d1r0ka3138 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z 100.0
d1q0qa3149 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E 100.0
d1q0qa198 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C 100.0
d1r0ka195 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C 99.98
d1t1ra326 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E 98.83
>d1r0ka3 d.81.1.3 (A:127-264) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
family: Dihydrodipicolinate reductase-like
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=100.00  E-value=1.5e-75  Score=490.87  Aligned_cols=133  Identities=42%  Similarity=0.747  Sum_probs=125.3

Q ss_pred             chhcccccchHHHhhcCCeEeeCCchhhHHHHHhcCCCCCccceEEEecc-----CCChhhhhcCCHHHHhcCCCCCCCc
Q 040690           19 TMIAGGPFILPLAHKHNIKFLPADSEHSAVFQCIQGLPEGALWRIILTAS-----DWPVEKMKEITVADALKHPIWTLGK   93 (285)
Q Consensus        19 slV~aG~li~~~~~~~~~~i~PvDSEHsAifQ~L~~~~~~~v~~iilTAS-----~~~~~~l~~vt~~~Al~HP~W~MG~   93 (285)
                      ||||||+++++.++++|++|+|||||||||||||.+.+.++|++|+||||     ++++++|++|||+|||+||||+||+
T Consensus         1 SlV~aG~li~~~~~k~~~~IiPIDSEH~AI~Q~L~~~~~~~I~kI~LTASGGPF~~~~~~~l~~vt~~~al~HP~W~MG~   80 (138)
T d1r0ka3           1 SLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPFRTTSLAEMATVTPERAVQHPNWSMGA   80 (138)
T ss_dssp             HHHTTHHHHHHHHHHHTCEEEECSHHHHHHHHHCCTTCGGGEEEEEEEECCCTTTTCCHHHHTTCCHHHHHC------CH
T ss_pred             CEEechHHHHHHHHHcCCeEEecCchHHHHHHHHhhcCcccccEEEEeccchhhhcchHHHhhcCCHHHHhcCCeeeccc
Confidence            79999999999999999999999999999999999999889999999999     8999999999999999999999999


Q ss_pred             ccccchhhhhhhhHHHHHHhhhhCCCCCceeEEEcCCcceeeeEEeecccEEEecCCC
Q 040690           94 KITIDSATLFNKGLEVIEAHYLFGAGYDNIEIVIHPQSILHSMIETQDSSVIGQLGWA  151 (285)
Q Consensus        94 KITIDSATm~NKglEvIEA~~LF~~~~~~I~vvIHpqSivHs~V~f~DGs~~a~~~~p  151 (285)
                      |||||||||||||||+||||||||+|+++|+|||||||||||||+|.|||++||||.|
T Consensus        81 KisIDSATmmNK~lEvIEA~~LF~~~~~~I~v~IHpqsiiHs~V~f~Dgs~~a~~~~P  138 (138)
T d1r0ka3          81 KISIDSATMMNKGLELIEAFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSP  138 (138)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHCCCGGGEEEEECTTCCEEEEEEETTSCEEEEECCS
T ss_pred             eeeccHHHHHHHHHhHHHHHHHHCcCHHHeEEEECCCceEEEEEEECCCcEEEeccCC
Confidence            9999999999999999999999999999999999999999999999999999999988
>d1q0qa3 d.81.1.3 (A:126-274) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q0qa1 a.69.3.1 (A:301-398) 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r0ka1 a.69.3.1 (A:291-385) 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1t1ra3 c.2.1.3 (A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure