Citrus Sinensis ID: 040693
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | 2.2.26 [Sep-21-2011] | |||||||
| P77931 | 639 | Polyvinylalcohol dehydrog | N/A | no | 0.895 | 0.535 | 0.286 | 3e-34 | |
| Q588Z1 | 654 | Polyvinylalcohol dehydrog | N/A | no | 0.897 | 0.524 | 0.300 | 4e-33 | |
| Q8GR64 | 690 | Quinohemoprotein alcohol | yes | no | 0.489 | 0.271 | 0.233 | 3e-05 | |
| Q46444 | 708 | Quinohemoprotein ethanol | yes | no | 0.486 | 0.262 | 0.235 | 0.0001 |
| >sp|P77931|PVADH_PSESP Polyvinylalcohol dehydrogenase OS=Pseudomonas sp. GN=pvaA PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 146 bits (369), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 121/422 (28%), Positives = 184/422 (43%), Gaps = 80/422 (18%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFE---LCCTFQGSL 57
A+ GK +WKT +DD +T S TY++G +V SS E CC F+G+L
Sbjct: 255 ALDAQTGKQLWKTTIDDQPGVQMTGSPTYHEGKLFVPISSGNEAFATNDQWECCKFRGAL 314
Query: 58 AKLDAKTGRILWQTFML-----PDNFGKLNEY----AGAAIWGSSPSIDPIRNHVYIATG 108
LDA +G++LW+T+ P KL + AG +IW S+P+IDP R VY+AT
Sbjct: 315 VALDALSGKVLWKTYTTQKEPAPFRLNKLGKQMWGPAGGSIW-SAPTIDPKRGLVYVATS 373
Query: 109 NLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWF 168
N Y+ H S++++A++++TGK+ W Q+ D +
Sbjct: 374 NSYTEVHH-----------------------EGSDAVMAMEIETGKVRWINQVTKDDNYI 410
Query: 169 GACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDS-GSL 227
C NCP PD G +P++ ++ + +V QKSG +A+D D+ G L
Sbjct: 411 IGCP--RAANCPEKVGPDFALGNSPILHTLQDGR---QYIVVGQKSGAVYAMDPDNDGEL 465
Query: 228 IWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG 287
IW PG GG +G A D +Y I++ + KP G A+ +G
Sbjct: 466 IWMRRVSPGSELGGVEFGMAADAENVYVGISDVITRKGG-KP--------GVYALRIRDG 516
Query: 288 NVLWSTADPS----------NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSY 337
+W+ P + VT GV+F GS G A GK+LW +
Sbjct: 517 ADVWAFPAPRTPCRWNNIFCHPAVSQAVTAMPGVVFAGSM--DGHFRAFSTSDGKVLWEF 574
Query: 338 DTGATIY---------------GGASVSNGCIYMGNGY--KVTVGFGNKNFTSGTSLYAF 380
+T A Y G +++ G +Y+ +GY + T G+ G L AF
Sbjct: 575 NTAAAPYKTVAGKQADGGVMDGAGPTIAGGMVYVHSGYAGRSTQNAGDLRGREGNVLIAF 634
Query: 381 CV 382
V
Sbjct: 635 SV 636
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Catalyzes the oxidation of polyvinyl alcohol (PVA) in the polyvinyl alcohol degradation pathway. Pseudomonas sp (taxid: 306) EC: 1EC: .EC: 1EC: .EC: 2EC: .EC: 6 |
| >sp|Q588Z1|PVADH_SPHS1 Polyvinylalcohol dehydrogenase OS=Sphingopyxis sp. (strain 113P3) GN=pvadh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 192/429 (44%), Gaps = 86/429 (20%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYV----GTSSIEEGLTFELCCTFQGS 56
A+ GK +WKT +DD +T S TY+ G YV GT + + T+E CC F+G+
Sbjct: 262 ALDAETGKQLWKTVVDDQPALQMTGSITYWDGKIYVPISSGTEAFAQIPTWE-CCKFRGA 320
Query: 57 LAKLDAKTGRILWQTFML---PDNFGKLNEYAGAAIWGSS-------PSIDPIRNHVYIA 106
L LDA TG+ILW+ + P F KLN+ AG +WG S P++D R +Y+
Sbjct: 321 LVALDAATGKILWKRYTTEQEPRPF-KLNK-AGRQMWGPSGGAIWVTPTVDEARRLIYVG 378
Query: 107 TGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDV 166
T N Y+ P ++S+S++A+D DTG + W QL D
Sbjct: 379 TSNSYT-----------------------DVPYDNSDSVMAIDADTGAVRWTVQLLADDN 415
Query: 167 WFGACNWYL---NPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD-R 222
+ C W + NCP PD G AP+ M K + ++ QKSG +ALD
Sbjct: 416 YIDGC-WQKGKEHANCPNPLGPDFSIGAAPIYRKMADGK---EFLLVGQKSGMIYALDPA 471
Query: 223 DSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282
+ G+ IW + G GG +G A D+ ++Y +++ + +K+ G W A+
Sbjct: 472 NKGAKIWERQLSLGSALGGIEFGTAADDGKVYAGVSDIASQ------AKDRGKPGLW-AL 524
Query: 283 DASNGNVLWSTADPSN-----------GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTG 331
D G V W+ + + G ++V G +F GS G A D TG
Sbjct: 525 DIRTGEVAWNFLNAPDTKCRWNNWWCHGAFSQAISVIPGAIFAGS--YDGHFRAFDTATG 582
Query: 332 KILWSYDT---------GATIYGGA------SVSNGCIYMGNGY---KVTVGFGNKNFTS 373
KI+W DT GA +GG +++ G +Y+ +GY G + T
Sbjct: 583 KIIWDVDTGTKAVTTLSGAKAFGGVMDGAGPTIAGGMVYVHSGYAGRSSESGGRDLRGTD 642
Query: 374 GTSLYAFCV 382
G L AF V
Sbjct: 643 GNILMAFSV 651
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Catalyzes the oxidation of polyvinyl alcohol (PVA) in the polyvinyl alcohol degradation pathway. Sphingopyxis sp. (strain 113P3) (taxid: 292913) EC: 1 EC: . EC: 1 EC: . EC: 2 EC: . EC: 6 |
| >sp|Q8GR64|QHED_PSEPU Quinohemoprotein alcohol dehydrogenase ADH IIB OS=Pseudomonas putida GN=qbdA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 98/248 (39%), Gaps = 61/248 (24%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK +W + D A+ + IT + KG +G E G+ +G ++
Sbjct: 153 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGV--------RGFVSA 204
Query: 60 LDAKTGRILWQTFM------LPDNFGKLNEYA-------------GAAIWGSSPSIDPIR 100
DA TG++ W+ + LP +L E A G +W S + DP
Sbjct: 205 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSM-AYDPEL 263
Query: 101 NHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160
+ +Y+ TGN +R +P D + +S+LA+ DTGK+ W+ Q
Sbjct: 264 DLLYVGTGNGSPWNREVR---------SPGGGDNL-----YLSSILAIRPDTGKLAWHYQ 309
Query: 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220
+ PG S D + + + + +++ K+GF + L
Sbjct: 310 V------------------TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 351
Query: 221 DRDSGSLI 228
DR +G LI
Sbjct: 352 DRTNGKLI 359
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Catalyzes the dye-linked oxidation of primary alcohols to the corresponding aldehydes and the (subsequent) oxidation of the aldehydes to carboxylic acids. Exhibits activity with longer mono-alcohols (C-4 to C-7) but not with methanol or glycerol. Reacts with 1,2-propanediol and 1,3-propanediol but not with sugar alcohols such as D-sorbitol. Pseudomonas putida (taxid: 303) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: . EC: 1 |
| >sp|Q46444|QHED_COMTE Quinohemoprotein ethanol dehydrogenase type-1 OS=Comamonas testosteroni GN=qheDH PE=1 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 94/251 (37%), Gaps = 65/251 (25%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGT--YYKGAYYVGTSSIEEGLTFELCCTFQGSLA 58
A+ + GK VW + + +T++G +KG +G E G+ +G +
Sbjct: 173 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGKRGAEYGV--------RGYIT 224
Query: 59 KLDAKTGRILWQTFMLP-------------------DNFGKLNEYAGAAIWGSSPSIDPI 99
DA+TG W+ F +P D GK E G S + D
Sbjct: 225 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 284
Query: 100 RNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159
N +Y+ TGN +R + +N + S++ALD DTGK W+
Sbjct: 285 LNTMYVGTGNGSPWSHKVRSPKGGDNL--------------YLASIVALDPDTGKYKWHY 330
Query: 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADF-GEAPMMLSMYRNKVK-HDIVVAVQKSGFA 217
Q D W D+ PM+L+ + K +++ K+GF
Sbjct: 331 QETPGDNW--------------------DYTSTQPMILADIKIAGKPRKVILHAPKNGFF 370
Query: 218 WALDRDSGSLI 228
+ LDR +G I
Sbjct: 371 FVLDRTNGKFI 381
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Catalyzes the dye-linked oxidation of primary alcohols to the corresponding aldehydes and the (subsequent) oxidation of the aldehydes to carboxylic acids. Comamonas testosteroni (taxid: 285) EC: 1 EC: . EC: 1 EC: . EC: 9 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| 449459518 | 538 | PREDICTED: polyvinylalcohol dehydrogenas | 0.997 | 0.708 | 0.747 | 1e-165 | |
| 296082870 | 565 | unnamed protein product [Vitis vinifera] | 1.0 | 0.676 | 0.710 | 1e-153 | |
| 449520922 | 362 | PREDICTED: polyvinylalcohol dehydrogenas | 0.916 | 0.966 | 0.742 | 1e-150 | |
| 356529945 | 580 | PREDICTED: quinohaemoprotein ethanol deh | 0.997 | 0.656 | 0.712 | 1e-150 | |
| 296082871 | 1752 | unnamed protein product [Vitis vinifera] | 0.994 | 0.216 | 0.670 | 1e-144 | |
| 124360970 | 539 | Quinonprotein alcohol dehydrogenase-like | 1.0 | 0.708 | 0.672 | 1e-143 | |
| 357501727 | 569 | Quinohaemoprotein ethanol dehydrogenase | 0.947 | 0.636 | 0.682 | 1e-138 | |
| 357501719 | 528 | Quinohaemoprotein ethanol dehydrogenase | 0.994 | 0.719 | 0.677 | 1e-138 | |
| 296086410 | 536 | unnamed protein product [Vitis vinifera] | 0.997 | 0.710 | 0.582 | 1e-122 | |
| 296086409 | 534 | unnamed protein product [Vitis vinifera] | 0.997 | 0.713 | 0.578 | 1e-122 |
| >gi|449459518|ref|XP_004147493.1| PREDICTED: polyvinylalcohol dehydrogenase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/388 (74%), Positives = 336/388 (86%), Gaps = 7/388 (1%)
Query: 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLD 61
VKRS GKLVW T+LD RSFITMSGTYYKG++++GTSS+EEGL + CCTF+GS +KLD
Sbjct: 151 VKRSTGKLVWCTRLDYKNRSFITMSGTYYKGSFFIGTSSLEEGLPVDQCCTFRGSFSKLD 210
Query: 62 AKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQ 121
AKTG ILWQTFMLPDN G +Y+GAAIWGSSPSIDP+RN VYIATGNLYS PL IR+CQ
Sbjct: 211 AKTGAILWQTFMLPDNHGDTEQYSGAAIWGSSPSIDPLRNLVYIATGNLYSAPLRIRECQ 270
Query: 122 E-ENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCP 180
E +NNQT PT PDKCIEPENHSNS+LALDLD+G I WYKQLGGYDVWFGACNW+L+P CP
Sbjct: 271 ERQNNQTEPTLPDKCIEPENHSNSILALDLDSGDIKWYKQLGGYDVWFGACNWHLDPRCP 330
Query: 181 PGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWS------MEAG 234
PGPS D+DFGE+PMMLS++ +K DIVVAVQKSGFAWALDRD+G+L+WS +EAG
Sbjct: 331 PGPSSDSDFGESPMMLSVFVRNMKRDIVVAVQKSGFAWALDRDNGNLVWSKESFIPLEAG 390
Query: 235 PGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294
PGGLGGG MWGAATDE+R+YTNIANSQHKNF LKP+ +TIAGGWVAM+A G+++WSTA
Sbjct: 391 PGGLGGGGMWGAATDEKRVYTNIANSQHKNFTLKPTNKTTIAGGWVAMEAKTGDIIWSTA 450
Query: 295 DPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCI 354
+ TAPGPVT+ANGV+F GSTYRQGPIYAMD KTGKI+WSY+TG ++YGG SVS GCI
Sbjct: 451 NLKEATAPGPVTIANGVVFAGSTYRQGPIYAMDAKTGKIVWSYETGGSVYGGISVSKGCI 510
Query: 355 YMGNGYKVTVGFGNKNFTSGTSLYAFCV 382
Y+GNGYK +GF NKN+T+GTSLYAFCV
Sbjct: 511 YVGNGYKEHIGFVNKNYTAGTSLYAFCV 538
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082870|emb|CBI22171.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 272/383 (71%), Positives = 320/383 (83%), Gaps = 1/383 (0%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
AV+++ G+LVW T+LD + +TMSGT++KGA+YVGTSS+EE L+ E CC F+GSL+KL
Sbjct: 183 AVEQATGRLVWSTRLDSNPTGIVTMSGTFHKGAFYVGTSSVEEELSIEQCCVFRGSLSKL 242
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQC 120
D KTG ILWQTF LPDN GK EYAGAAIWGSSPSID RN VY+ATGNLYS PL+IR+C
Sbjct: 243 DIKTGVILWQTFTLPDNHGKRGEYAGAAIWGSSPSIDVRRNLVYVATGNLYSAPLNIREC 302
Query: 121 QEE-NNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNC 179
QE+ NNQT PT D+CIEP+NHSNS+LA +LD+GKI WY+QLGGYD+WF ACN PNC
Sbjct: 303 QEQQNNQTAPTQTDQCIEPDNHSNSILAFELDSGKIKWYRQLGGYDLWFFACNNLSTPNC 362
Query: 180 PPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG 239
PPGPSPDADFGEAP+MLS+ N D+V AVQKSGFAWALDR +GSL+WS EAGPGGL
Sbjct: 363 PPGPSPDADFGEAPIMLSINLNGTMWDVVSAVQKSGFAWALDRYNGSLVWSTEAGPGGLT 422
Query: 240 GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299
GG WGAATD +R+YTNIANS KNF LKPS+ +T AGGWVAMDAS G +LWSTADPSN
Sbjct: 423 GGGTWGAATDNKRVYTNIANSDSKNFTLKPSEKNTTAGGWVAMDASTGKILWSTADPSNA 482
Query: 300 TAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNG 359
T+ GPVT+ANGVLFGGST+ GPIYAMD ++GKILWS++TGAT+YGG SVSNGCIY+GNG
Sbjct: 483 TSNGPVTIANGVLFGGSTHPTGPIYAMDARSGKILWSHNTGATVYGGISVSNGCIYLGNG 542
Query: 360 YKVTVGFGNKNFTSGTSLYAFCV 382
YKV +G +FT+GTSL+AFCV
Sbjct: 543 YKVNLGSFTASFTNGTSLFAFCV 565
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520922|ref|XP_004167481.1| PREDICTED: polyvinylalcohol dehydrogenase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 538 bits (1386), Expect = e-150, Method: Compositional matrix adjust.
Identities = 265/357 (74%), Positives = 310/357 (86%), Gaps = 7/357 (1%)
Query: 33 AYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGS 92
++++GTSS+EEGL + CCTF+GS +KLDAKTG ILWQTFMLPDN G +Y+GAAIWGS
Sbjct: 6 SFFIGTSSLEEGLPVDQCCTFRGSFSKLDAKTGAILWQTFMLPDNHGDTEQYSGAAIWGS 65
Query: 93 SPSIDPIRNHVYIATGNLYSVPLHIRQCQE-ENNQTTPTSPDKCIEPENHSNSLLALDLD 151
SPSIDP+RN VYIATGNLYS PL IR+CQE +NNQT PT PDKCIEPENHSNS+LALDLD
Sbjct: 66 SPSIDPLRNLVYIATGNLYSAPLRIRECQERQNNQTEPTLPDKCIEPENHSNSILALDLD 125
Query: 152 TGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211
+G I WYKQLGGYDVWFGACNW+L+P CPPGPS D+DFGE+PMMLS++ +K DIVVAV
Sbjct: 126 SGDIKWYKQLGGYDVWFGACNWHLDPRCPPGPSSDSDFGESPMMLSVFVRNMKRDIVVAV 185
Query: 212 QKSGFAWALDRDSGSLIWS------MEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNF 265
QKSGFAWALDRD+G+L+WS +EAGPGGLGGG MWGAATDE+R+YTNIANSQHKNF
Sbjct: 186 QKSGFAWALDRDNGNLVWSKESFIPLEAGPGGLGGGGMWGAATDEKRVYTNIANSQHKNF 245
Query: 266 NLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYA 325
LKP+ +TIAGGWVAM+A G+++WSTA+ TAPGPVT+ANGV+F GSTYRQGPIYA
Sbjct: 246 TLKPTNKTTIAGGWVAMEAKTGDIIWSTANLKEATAPGPVTIANGVVFAGSTYRQGPIYA 305
Query: 326 MDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382
MD KTGKI+WSY+TG ++YGG SVS GCIY+GNGYK +GF NKN+T+GTSLYAFCV
Sbjct: 306 MDAKTGKIVWSYETGGSVYGGISVSKGCIYVGNGYKEHIGFVNKNYTAGTSLYAFCV 362
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356529945|ref|XP_003533546.1| PREDICTED: quinohaemoprotein ethanol dehydrogenase type-1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 273/383 (71%), Positives = 317/383 (82%), Gaps = 2/383 (0%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
AVKRS G LVW+T LD H S +TMSGTYYKGAYYVG SS+EE LT E CCTF+GS +KL
Sbjct: 199 AVKRSTGDLVWQTPLDSHNSSVVTMSGTYYKGAYYVGASSLEE-LTTEECCTFRGSFSKL 257
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQC 120
D ++G ILWQTFMLPDN G+ EYAGAA+WGSSPSID RNH+YIATGNLYS PL I +C
Sbjct: 258 DIQSGVILWQTFMLPDNHGQRGEYAGAAVWGSSPSIDASRNHIYIATGNLYSAPLDILEC 317
Query: 121 QE-ENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNC 179
QE ENN T PT PD+C+EP+NHS+S+LALDLD GKI WY+QLGGYDVWF +CN PNC
Sbjct: 318 QERENNVTQPTHPDECVEPDNHSDSILALDLDDGKIKWYRQLGGYDVWFLSCNNLSTPNC 377
Query: 180 PPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG 239
PPGP+PDADFGEAPMML++ N K D VVAVQKSGFAWAL RD+G+LIWS EAGPGGL
Sbjct: 378 PPGPNPDADFGEAPMMLTIDVNGTKQDTVVAVQKSGFAWALHRDNGNLIWSTEAGPGGLA 437
Query: 240 GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299
GG WGAATD+ R+YTNIANS +NF LKPS +T +GGWVAM+AS+G +LWS A+PSN
Sbjct: 438 GGGTWGAATDKERVYTNIANSDGQNFTLKPSNKTTTSGGWVAMEASSGKILWSIANPSNA 497
Query: 300 TAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNG 359
TA GPVTVANGV+F GST ++GPIYA++ KTGKI WSY+TG+T+YGG SVS+GCIY GNG
Sbjct: 498 TANGPVTVANGVVFAGSTNQKGPIYAINGKTGKIEWSYETGSTVYGGMSVSDGCIYFGNG 557
Query: 360 YKVTVGFGNKNFTSGTSLYAFCV 382
YK+ VG NFT+GTSL+AFCV
Sbjct: 558 YKIGVGLNLGNFTAGTSLFAFCV 580
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082871|emb|CBI22172.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust.
Identities = 256/382 (67%), Positives = 308/382 (80%), Gaps = 2/382 (0%)
Query: 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLD 61
V R+ G+L W T+L+ + +TMSGT++ G++YVGTSS EE L+ + CC F+GSL+KLD
Sbjct: 1371 VDRATGRLAWSTRLESNPAGAVTMSGTFHNGSFYVGTSSFEEKLSIKQCCIFRGSLSKLD 1430
Query: 62 AKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQ 121
KTG ILWQT++LPDN G+ EYAG AIWGSSPSI +RN VYIATGNLYS PL+IR+CQ
Sbjct: 1431 IKTGTILWQTYVLPDNHGEKGEYAGGAIWGSSPSIGVLRNFVYIATGNLYSAPLNIRECQ 1490
Query: 122 EE-NNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCP 180
E+ NNQT PT PD CIEP+NHSNS+LA DLD+GKI WY+QLGGYD+WF ACN PNCP
Sbjct: 1491 EQQNNQTVPTQPDPCIEPDNHSNSILAFDLDSGKIKWYRQLGGYDLWFRACNNLSTPNCP 1550
Query: 181 PGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGG 240
PGP+PDADFGEAPMMLS+Y N DIVVAVQKSGFAWALDRD GSL+W EAGPGG+ G
Sbjct: 1551 PGPNPDADFGEAPMMLSIYLNGTMPDIVVAVQKSGFAWALDRDDGSLVWYTEAGPGGVTG 1610
Query: 241 GAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT 300
G WGAATD +R+YTNI NS KNF LKPS T AGGWVAMDA+ G LWSTA+PSN +
Sbjct: 1611 GGTWGAATDGKRVYTNILNSDGKNFTLKPSNTITNAGGWVAMDANTGKTLWSTANPSNAS 1670
Query: 301 APGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGY 360
GPVT+ANGVLF GST+ GP+YAM+ +G+ILWS++TGA+++GGASVSNGCIY+G+GY
Sbjct: 1671 TNGPVTIANGVLFAGSTHPTGPMYAMEAASGRILWSHNTGASVFGGASVSNGCIYVGSGY 1730
Query: 361 KVTVGFGNKNFTSGTSLYAFCV 382
V G + +FT GTSL+AFC+
Sbjct: 1731 NVNSG-PHFSFTGGTSLFAFCL 1751
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|124360970|gb|ABN08942.1| Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/385 (67%), Positives = 307/385 (79%), Gaps = 3/385 (0%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
AV RS G L+W+T+LD + +TMSGTYYKGAYYVG+SS+EE + E CCTF+GS +KL
Sbjct: 155 AVNRSTGDLIWQTRLDSNDAGVVTMSGTYYKGAYYVGSSSLEELKSAEECCTFRGSFSKL 214
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQC 120
D K+G ILW+T+MLPDN GK EY+G AIWGSSP ID RNH+YIATGNLYS PLHIRQC
Sbjct: 215 DIKSGAILWKTYMLPDNNGKRGEYSGGAIWGSSPPIDASRNHIYIATGNLYSAPLHIRQC 274
Query: 121 QEENNQ---TTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNP 177
Q+E N T PT PD+C+EPENHSNS+LALDL G+I WY QLGGYDVWF ACN P
Sbjct: 275 QDEENNKNLTRPTQPDQCVEPENHSNSILALDLYNGEIKWYHQLGGYDVWFLACNDLSTP 334
Query: 178 NCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG 237
NCPPGP+PDADFGEAPMML++ N K DIVVAVQKSGFAWAL R +G +IWS EAGPGG
Sbjct: 335 NCPPGPNPDADFGEAPMMLTIDVNGTKQDIVVAVQKSGFAWALHRHNGDIIWSTEAGPGG 394
Query: 238 LGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297
+ GG WGAATD+ R+YTNIANS KNF LKPS + +GGWVAM+AS+G +LW+ A+PS
Sbjct: 395 VAGGGTWGAATDKERVYTNIANSNAKNFTLKPSNKTITSGGWVAMEASSGKILWAIANPS 454
Query: 298 NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMG 357
N TA GPV+VANG++F GS R+GPIYA++ KTG+ILWSY+TGAT+YGG S++NGCIY+G
Sbjct: 455 NATANGPVSVANGIVFAGSANRKGPIYAINGKTGEILWSYETGATVYGGISINNGCIYLG 514
Query: 358 NGYKVTVGFGNKNFTSGTSLYAFCV 382
NGY V + T GTSLYAFCV
Sbjct: 515 NGYTVGLATVIGGLTGGTSLYAFCV 539
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501727|ref|XP_003621152.1| Quinohaemoprotein ethanol dehydrogenase type-1 [Medicago truncatula] gi|355496167|gb|AES77370.1| Quinohaemoprotein ethanol dehydrogenase type-1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 249/365 (68%), Positives = 296/365 (81%), Gaps = 3/365 (0%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
AV RS G L+W+T+LD + +TMSGTYYKGAYYVG+SS+EE + E CCTF+GS +KL
Sbjct: 155 AVNRSTGDLIWQTRLDSNDAGVVTMSGTYYKGAYYVGSSSLEELKSAEECCTFRGSFSKL 214
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQC 120
D K+G ILW+T+MLPDN GK EY+G AIWGSSP ID RNH+YIATGNLYS PLHIRQC
Sbjct: 215 DIKSGAILWKTYMLPDNNGKRGEYSGGAIWGSSPPIDASRNHIYIATGNLYSAPLHIRQC 274
Query: 121 QEENNQ---TTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNP 177
Q+E N T PT PD+C+EPENHSNS+LALDL G+I WY QLGGYDVWF ACN P
Sbjct: 275 QDEENNKNLTRPTQPDQCVEPENHSNSILALDLYNGEIKWYHQLGGYDVWFLACNDLSTP 334
Query: 178 NCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG 237
NCPPGP+PDADFGEAPMML++ N K DIVVAVQKSGFAWAL R +G +IWS EAGPGG
Sbjct: 335 NCPPGPNPDADFGEAPMMLTIDVNGTKQDIVVAVQKSGFAWALHRHNGDIIWSTEAGPGG 394
Query: 238 LGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297
+ GG WGAATD+ R+YTNIANS KNF LKPS + +GGWVAM+AS+G +LW+ A+PS
Sbjct: 395 VAGGGTWGAATDKERVYTNIANSNAKNFTLKPSNKTITSGGWVAMEASSGKILWAIANPS 454
Query: 298 NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMG 357
N TA GPV+VANG++F GS R+GPIYA++ KTG+ILWSY+TGAT+YGG S++NGCIY+G
Sbjct: 455 NATANGPVSVANGIVFAGSANRKGPIYAINGKTGEILWSYETGATVYGGISINNGCIYLG 514
Query: 358 NGYKV 362
NGY V
Sbjct: 515 NGYTV 519
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357501719|ref|XP_003621148.1| Quinohaemoprotein ethanol dehydrogenase type-1 [Medicago truncatula] gi|355496163|gb|AES77366.1| Quinohaemoprotein ethanol dehydrogenase type-1 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 260/384 (67%), Positives = 308/384 (80%), Gaps = 4/384 (1%)
Query: 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLD 61
++R G+LVW T LD+H +TMSGTYY G+YYVGTSS+EEG T + CC F+GSL KLD
Sbjct: 146 LERRTGELVWLTHLDNHPAGVVTMSGTYYNGSYYVGTSSLEEGATIKDCCIFRGSLVKLD 205
Query: 62 AKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQ 121
A+TG ILW+T+MLPDN GK+ YAGAAIWGSSPSID R HVYIATGNLYS P ++ +CQ
Sbjct: 206 AQTGDILWKTYMLPDNNGKIGAYAGAAIWGSSPSIDVYRKHVYIATGNLYSAPKNVLECQ 265
Query: 122 E-ENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCP 180
E +NNQTTP DKC+EPENHSNS+LALDLD+G I WYKQLGGYDVWF +CN NCP
Sbjct: 266 ERQNNQTTPIEQDKCVEPENHSNSILALDLDSGNIKWYKQLGGYDVWFVSCNNASISNCP 325
Query: 181 P-GPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG 239
P G PDADFGEAPMML+ + N K DIVVAVQKSGFAWALDRD+G+L+W EAGPGGL
Sbjct: 326 PQGSIPDADFGEAPMMLTTHVNGTKKDIVVAVQKSGFAWALDRDNGTLLWFTEAGPGGLA 385
Query: 240 GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS-N 298
GG +GAATDE+RIYTNIANS K F L PS +T +GGWVAMDASNG +LWSTA+PS N
Sbjct: 386 GGGTFGAATDEKRIYTNIANSDAKIFKLLPSNMNTTSGGWVAMDASNGTILWSTANPSIN 445
Query: 299 GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGN 358
TA GPV+VAN V+F GST R G IYA++ + G ILW Y+TGA++YGG S+SNGC+Y+G+
Sbjct: 446 STASGPVSVANEVVFVGSTDRLGHIYAINGRNGHILWFYETGASVYGGMSISNGCVYVGH 505
Query: 359 GYKVTVGFGNKNFTSGTSLYAFCV 382
GY V++GF N+T GTSL+AFCV
Sbjct: 506 GYNVSLGF-YSNYTGGTSLFAFCV 528
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086410|emb|CBI31999.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/383 (58%), Positives = 285/383 (74%), Gaps = 2/383 (0%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
AV R G LVW T LD H RS ITMSGT Y G +YVG SS+EE L E CCTF+GS+AKL
Sbjct: 152 AVNRLKGTLVWSTVLDPHPRSQITMSGTPYSGDFYVGVSSLEEALPPEQCCTFRGSMAKL 211
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQC 120
D TG +LW+T+M+PDN G++ Y+GAA+WGSSP+ID R VYI TGNLYS P + +C
Sbjct: 212 DIGTGEVLWRTYMIPDNGGQIGGYSGAALWGSSPAIDIKRGLVYIGTGNLYSAPAEVLEC 271
Query: 121 Q-EENNQTTPTSPDKCIE-PENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPN 178
Q NNQTTP+ PD+C++ P H +S+LAL+L +GKI W+++ YDV++ AC NP
Sbjct: 272 QARRNNQTTPSQPDQCVDDPNVHFDSILALELHSGKIRWFRRFESYDVFYFACLVPNNPT 331
Query: 179 CPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGL 238
CPPGP+ DADFGEAPM+L+++ N K D+VVAVQKSG+ WALDRDSG ++W AGPGGL
Sbjct: 332 CPPGPNLDADFGEAPMLLTIFSNGTKRDVVVAVQKSGYTWALDRDSGDIVWFNVAGPGGL 391
Query: 239 GGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN 298
GG +WGAATD +R+YTNI NS +F L PS +T +G WVA+DA+ G ++WST +PSN
Sbjct: 392 EGGGVWGAATDGKRVYTNIVNSYLASFRLAPSNQTTTSGAWVALDANTGEIVWSTTNPSN 451
Query: 299 GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGN 358
TA GPVTVANGV+F GS GP Y MD +TG I+W+Y+T AT+YGGASVS GC+Y+G+
Sbjct: 452 ETAHGPVTVANGVVFAGSVAPSGPFYGMDAETGTIIWTYNTNATVYGGASVSYGCVYLGH 511
Query: 359 GYKVTVGFGNKNFTSGTSLYAFC 381
GY V + + ++ GTSL+AFC
Sbjct: 512 GYTVALAKFHPSWNRGTSLFAFC 534
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296086409|emb|CBI31998.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/382 (57%), Positives = 284/382 (74%), Gaps = 1/382 (0%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ R +G LVW T LD RS IT SGT Y +YVG SS+E L E CCTF+GS+AKL
Sbjct: 151 AINRFSGALVWSTVLDTRPRSQITTSGTPYLEGFYVGVSSLEVTLPAEQCCTFRGSMAKL 210
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQC 120
D +TG +LW+T+ +PDN GKL Y+GAAIWGSSP+ID RN VYI TGNLY+ P ++QC
Sbjct: 211 DIQTGAVLWRTYTIPDNAGKLGGYSGAAIWGSSPAIDTKRNLVYIGTGNLYNAPTEVQQC 270
Query: 121 Q-EENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNC 179
Q NNQT P+ PD+CI P+ H +S+LAL+LD+GKI W++Q GGYDV++ C NP C
Sbjct: 271 QANRNNQTIPSQPDQCIAPDVHFDSILALELDSGKIRWFRQFGGYDVFYFVCLVPNNPAC 330
Query: 180 PPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG 239
P GP+ DADFGEAPM+L+++ N + D+VVAVQKSGFAWALDRD+G ++W AGPGGL
Sbjct: 331 PTGPNLDADFGEAPMLLTIFPNGTRRDVVVAVQKSGFAWALDRDTGDIVWFNLAGPGGLE 390
Query: 240 GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299
GG +WGAATD +R+YTNI N+ F L PS +T G WVA+DA+ G ++WSTA+PSN
Sbjct: 391 GGGVWGAATDGKRVYTNIVNNAGVRFRLAPSNQTTTFGAWVALDANTGEIVWSTANPSNE 450
Query: 300 TAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNG 359
TA GPVTV NGV+F GS GP YAMD +TG I+W+Y+T AT+YGGASVS GC+++G+G
Sbjct: 451 TAHGPVTVTNGVVFAGSVAPSGPFYAMDAETGTIIWTYNTNATVYGGASVSYGCVFLGHG 510
Query: 360 YKVTVGFGNKNFTSGTSLYAFC 381
Y V++ + +T G S++AFC
Sbjct: 511 YSVSLARFHPTWTRGNSVFAFC 532
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 382 | ||||||
| TIGR_CMR|CPS_1887 | 587 | CPS_1887 "quinoprotein alcohol | 0.418 | 0.272 | 0.260 | 2.8e-08 | |
| UNIPROTKB|Q8GR64 | 690 | qbdA "Quinohemoprotein alcohol | 0.376 | 0.208 | 0.251 | 8.4e-07 | |
| TIGR_CMR|SPO_1508 | 606 | SPO_1508 "quinoprotein ethanol | 0.201 | 0.127 | 0.345 | 7.4e-06 | |
| UNIPROTKB|Q4KEL0 | 631 | pedE "Quinoprotein ethanol deh | 0.209 | 0.126 | 0.325 | 1.2e-05 | |
| UNIPROTKB|Q4KEK5 | 591 | pedH "Quinoprotein ethanol deh | 0.450 | 0.291 | 0.244 | 0.00019 | |
| UNIPROTKB|Q48EX4 | 805 | gcd "Quinoprotein glucose dehy | 0.253 | 0.120 | 0.268 | 0.00079 |
| TIGR_CMR|CPS_1887 CPS_1887 "quinoprotein alcohol dehydrogenase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 116 (45.9 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 48/184 (26%), Positives = 76/184 (41%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ + GK+VWK K++D+ + IT + KG G + E G+ G +
Sbjct: 156 ALHKDTGKVVWKKKVEDYKAGYSITAAPIIVKGKVITGVAGGEFGVV--------GKVRA 207
Query: 60 LDAKTGRILWQTFMLPDNFG---KLNEYAGAAIWGSSPSID-PIR----NHVYIATGNLY 111
DA G+++W+ + + G K + I G P P G Y
Sbjct: 208 YDATNGKLVWERPTVEGHMGYIWKNGKKVDNGISGGKPGQTWPAELWKSGGAAPWLGGTY 267
Query: 112 SVPLHIRQCQEENNQTTPTSPDKCIEPENH--SNSLLALDLDTGKIVWYKQLGGYDVW-F 168
+ + N P + + P ++ S+S LA+D DTGKIVW+ Q +D W F
Sbjct: 268 DADVDLLFFGTGN----PAPWNSHLRPGDNLFSSSRLAIDPDTGKIVWHFQTTPHDGWDF 323
Query: 169 GACN 172
N
Sbjct: 324 DGVN 327
|
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| UNIPROTKB|Q8GR64 qbdA "Quinohemoprotein alcohol dehydrogenase ADH IIB" [Pseudomonas putida (taxid:303)] | Back alignment and assigned GO terms |
|---|
Score = 110 (43.8 bits), Expect = 8.4e-07, Sum P(3) = 8.4e-07
Identities = 47/187 (25%), Positives = 81/187 (43%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK +W + D A+ + IT + KG +G E G+ +G ++
Sbjct: 153 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGV--------RGFVSA 204
Query: 60 LDAKTGRILWQTFMLPDN------FGKLNEYA-------------GAAIWGSSPSIDPIR 100
DA TG++ W+ + +P + +L E A G +W S + DP
Sbjct: 205 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSM-AYDPEL 263
Query: 101 NHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160
+ +Y+ TGN P + R+ + +P D + +S+LA+ DTGK+ W+ Q
Sbjct: 264 DLLYVGTGN--GSPWN-REVR------SPGGGDNL-----YLSSILAIRPDTGKLAWHYQ 309
Query: 161 LGGYDVW 167
+ D W
Sbjct: 310 VTPGDSW 316
|
|
| TIGR_CMR|SPO_1508 SPO_1508 "quinoprotein ethanol dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 28/81 (34%), Positives = 43/81 (53%)
Query: 265 FNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIY 324
F +KP+ I G A+D G + W + + G +T A G++F G+ +G
Sbjct: 474 FTIKPNYEDHI-GSLKAIDPDTGELKWEFKNDAPLWG-GVMTTAGGLVFTGTP--EGKFI 529
Query: 325 AMDVKTGKILWSYDTGATIYG 345
A D +TG+ILWS+ TG+ I G
Sbjct: 530 AFDDETGEILWSFQTGSGIVG 550
|
|
| UNIPROTKB|Q4KEL0 pedE "Quinoprotein ethanol dehydrogenase PedE" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 90 (36.7 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 29/89 (32%), Positives = 42/89 (47%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340
AMD + G ++W + A G + ++F G+ G A D KTGK LW + TG
Sbjct: 512 AMDPTTGKLVWEHKEHLPLWA-GVLATKGNLVFTGTG--DGFFKAFDAKTGKELWKFQTG 568
Query: 341 ATIYGGASV--SNGCIYMGNGYKVTVGFG 367
+ I +G Y+G VTVG+G
Sbjct: 569 SGIVSPPITWEQDGEQYIG----VTVGYG 593
|
|
| UNIPROTKB|Q4KEK5 pedH "Quinoprotein ethanol dehydrogenase PedH" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
|---|
Score = 86 (35.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 47/192 (24%), Positives = 73/192 (38%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ + GK+VW K+ DH + I+ + G G + E G+ G +
Sbjct: 157 ALNKDTGKVVWSKKVADHKEGYSISAAPMMVNGKLITGVAGGEFGVV--------GKIQA 208
Query: 60 LDAKTGRILWQTFMLPDNFGKLNEYAGAAIWG-SSPSIDPIRNHVYIATGNLYSVPLHIR 118
D K G +LW + + G + + A G S TG + P
Sbjct: 209 YDPKNGELLWMRPTVEGHMGYVYKDGKAIENGISGGEAGKTWPGDLWKTGG--AAPWLGG 266
Query: 119 QCQEENNQT-----TPTSPDKCIEP-EN-HSNSLLALDLDTGKIVWYKQLGGYDVW-FGA 170
E N P + + P +N +S+S LAL+ D G I W+ Q +D W F
Sbjct: 267 YYDPETNLLLFGTGNPAPWNSHLRPGDNLYSSSRLALNPDDGTIKWHFQSTPHDGWDFDG 326
Query: 171 CNWYLNPNCPPG 182
N ++ N G
Sbjct: 327 VNELISFNYKEG 338
|
|
| UNIPROTKB|Q48EX4 gcd "Quinoprotein glucose dehydrogenase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] | Back alignment and assigned GO terms |
|---|
Score = 82 (33.9 bits), Expect = 0.00079, Sum P(3) = 0.00078
Identities = 32/119 (26%), Positives = 48/119 (40%)
Query: 55 GSLAKLDAKTGRILWQ------TFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATG 108
G + D TGR++W P GK+ +W S S+D +Y+ G
Sbjct: 384 GVIRTYDVHTGRLVWNWDSGNPEETAPIAEGKIYTRNSPNMW-SMFSVDEKLGMIYLPMG 442
Query: 109 NLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVW 167
N P + TP S E +S L+ALD+ TG++ W Q +D+W
Sbjct: 443 N--QTP------DQWGGDRTPDS-------EKYSAGLVALDIATGRVRWNYQFTHHDLW 486
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00020900001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (899 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 382 | |||
| cd10277 | 529 | cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacte | 2e-19 | |
| cd00216 | 434 | cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases | 2e-16 | |
| TIGR03075 | 526 | TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydroge | 9e-16 | |
| cd10280 | 616 | cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent gl | 3e-13 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 6e-13 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 1e-12 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 1e-09 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 2e-09 | |
| pfam13360 | 234 | pfam13360, PQQ_2, PQQ-like domain | 3e-09 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 6e-09 | |
| cd10279 | 549 | cd10279, PQQ_ADH_II, PQQ_like domain of the quinoh | 2e-08 | |
| cd10278 | 553 | cd10278, PQQ_MDH, Large subunit of methanol dehydr | 3e-08 | |
| cd10276 | 358 | cd10276, BamB_YfgL, Beta-barrel assembly machinery | 2e-07 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 7e-07 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 9e-07 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 2e-06 | |
| COG1520 | 370 | COG1520, COG1520, FOG: WD40-like repeat [Function | 2e-05 | |
| COG4993 | 773 | COG4993, Gcd, Glucose dehydrogenase [Carbohydrate | 5e-05 | |
| PRK11138 | 394 | PRK11138, PRK11138, outer membrane biogenesis prot | 2e-04 | |
| TIGR03074 | 764 | TIGR03074, PQQ_membr_DH, membrane-bound PQQ-depend | 2e-04 | |
| cd10277 | 529 | cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacte | 4e-04 | |
| TIGR03075 | 526 | TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydroge | 4e-04 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 4e-04 | |
| cd00216 | 434 | cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases | 7e-04 | |
| cd10280 | 616 | cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent gl | 7e-04 | |
| TIGR03300 | 377 | TIGR03300, assembly_YfgL, outer membrane assembly | 9e-04 | |
| cd10279 | 549 | cd10279, PQQ_ADH_II, PQQ_like domain of the quinoh | 0.003 | |
| cd10279 | 549 | cd10279, PQQ_ADH_II, PQQ_like domain of the quinoh | 0.003 | |
| smart00564 | 33 | smart00564, PQQ, beta-propeller repeat | 0.003 | |
| pfam01011 | 38 | pfam01011, PQQ, PQQ enzyme repeat | 0.004 |
| >gnl|CDD|199835 cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase) | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 99/408 (24%), Positives = 150/408 (36%), Gaps = 112/408 (27%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK+VWK K+ D+ + +T++ KG VG S E G+ +G +A
Sbjct: 123 ALDAKTGKVVWKKKVADYKAGYSMTLAPLVVKGKVIVGVSGGEFGV--------RGFIAA 174
Query: 60 LDAKTGRILWQTFMLPDNFGKLNE---------YAGAAIWGSSPSIDPIRNHVYIATGNL 110
LDA+TG+ +W+T+ +P + G A W + + DP N +Y GN
Sbjct: 175 LDAETGKEVWRTYTVPGPGEPGSTDTWPGDAWKTGGGATWLTG-TYDPETNLLYWGVGNP 233
Query: 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGA 170
+R +N +++S+LALD DTGKI W+ Q D W
Sbjct: 234 APWNGDLR---PGDNL--------------YTSSVLALDPDTGKIKWHYQYTPNDTW--- 273
Query: 171 CNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIW- 229
D D P++ +N +V ++GF + LDR +G LIW
Sbjct: 274 ---------------DYDGVNEPVLFDYTKNGKPVKALVHADRNGFFYVLDRTNGKLIWA 318
Query: 230 --------------------------------SMEAGPGGLGGGAMWGAATDERR--IYT 255
+++ P LGG A Y
Sbjct: 319 TPFVKKITWASIDLKTGRPIYDEDKVPPKKGKTVDFCPSFLGGKNWPPMAYSPDTGLFYV 378
Query: 256 NIANS----QHKNFNLKPSK------------NSTIAGGWVAMDASNGNVLWS--TADPS 297
+ + + K G A+D + G +W T P
Sbjct: 379 PANHWCMDLTGEPVSYKKGAAYLGAGFTIKPPFEDHIGELQAIDPTTGKKVWEHKTPLPL 438
Query: 298 NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYG 345
G G +T A G++F G+ G A D KTGK LW + TG+ I G
Sbjct: 439 WG---GVLTTAGGLVFTGTP--DGYFRAFDAKTGKELWEFQTGSGIIG 481
|
This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller. Length = 529 |
| >gnl|CDD|199833 cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases and related proteins | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 2e-16
Identities = 81/408 (19%), Positives = 142/408 (34%), Gaps = 103/408 (25%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK+ WK K D + T + G +G+S E G+ +G L
Sbjct: 95 ALNAETGKVAWKVKNADVLGGYTATSAPVVVDGLVIIGSSGDEFGV--------RGYLTA 146
Query: 60 LDAKTGRILWQTFMLPDNFGKLNEYAGAAIWG------------------SSPSIDPIRN 101
D TG W+ +++ + L SS + D N
Sbjct: 147 YDVATGEEKWRFYLVMPDPNLLPGKDSTVTDRNTPTGDEHTWTSGGGTGWSSAAYDAELN 206
Query: 102 HVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPEN--HSNSLLALDLDTGKIVWYK 159
+Y+ GN TP + P + +++S++A++ DTG++ W
Sbjct: 207 LIYVGGGN-----------------PTPWNWGGNRTPGDNLYTSSIVAVNADTGEMKWQY 249
Query: 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219
Q +D W D D P++ + K ++ A K+G +
Sbjct: 250 QTTPHDAW------------------DYDGDNTPVLADIKVKGKKVKVLFAPAKNGNFYV 291
Query: 220 LDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279
LDR +G L+ + P + +R ++ AN +
Sbjct: 292 LDRRNGELVSARPLVP---------DSYDPDRELFYVPANGRIM---------------- 326
Query: 280 VAMDASNGNVLWSTAD--PSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSY 337
A+D G V+W ++ P G GP++ A ++F G++ G + A + TG+ LW
Sbjct: 327 -ALDPVTGVVVWEKSELHPLLG---GPLSTAGNLVFVGTS--DGYLKAYNADTGEKLWQQ 380
Query: 338 DTGATIYGG--ASVSNG----CIYMGNGYKVTVGFGNKNFTSGTSLYA 379
+ +G I G G + G + T GT +
Sbjct: 381 KVPSGFQAEPVTYEVDGEQYVLIQAGGGGAFPLWGGMADLTRGTQMGG 428
|
This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ. Length = 434 |
| >gnl|CDD|234102 TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 9e-16
Identities = 102/449 (22%), Positives = 161/449 (35%), Gaps = 138/449 (30%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGT--YYKGAYYVGTSSIEEGLTFELCCTFQGSLA 58
A+ GK+VW K D+ + + T++ KG G S E G+ +G +
Sbjct: 134 ALDAKTGKVVWSKKNGDYKKGY-TITAAPLVVKGKVITGISGGEFGV--------RGYVT 184
Query: 59 KLDAKTGRILWQTFMLPDNFGKLNEYA--------------------GAAIWGSSPSIDP 98
DAKTG+++W+ + +P + G L G A WG+ S DP
Sbjct: 185 AYDAKTGKLVWRRYTVPGDMGYLKGKTSPVGGEPGAKTWPGDAWKTGGGATWGTG-SYDP 243
Query: 99 IRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWY 158
N +Y TGN H+R +N +++S++A D DTGKI W+
Sbjct: 244 ETNLIYFGTGNPAPWNSHLR---PGDNL--------------YTSSIVARDPDTGKIKWH 286
Query: 159 KQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAW 218
Q +D W D D ++ ++ ++ ++GF +
Sbjct: 287 YQTTPHDEW------------------DYDGVNEMILFDQKKDGKPRKLLAHADRNGFFY 328
Query: 219 ALDRDSGSLI--------------WSMEAG----------------------PGGLGG-- 240
LDR +G L+ ++ G PG LGG
Sbjct: 329 VLDRTNGKLLSAEPFVDKVNWATGVDLKTGRPIEVPEARSTGAKKGKPVEVCPGFLGGKN 388
Query: 241 -GAM---------------WGAA-TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283
M E+ Y A F +KP + I G +A D
Sbjct: 389 WQPMAYSPKTGLFYVPANHVCMDYWPEKVSYKKGAAYLGAGFTIKPPPDDHI-GSLIAWD 447
Query: 284 ASNGNVLWSTAD--PSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341
G ++W + P G G + A ++F G+ +G A D KTG+ LW + TG+
Sbjct: 448 PITGKIVWEHKEDFPLWG---GVLATAGDLVFTGTL--EGYFKAFDAKTGEELWKFKTGS 502
Query: 342 TIYGGASVSNGCIYMGNGYK---VTVGFG 367
I V Y +G + V G+G
Sbjct: 503 GI-----VGPPVTYEQDGKQYVAVLSGWG 526
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. Length = 526 |
| >gnl|CDD|199838 cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 3e-13
Identities = 44/183 (24%), Positives = 67/183 (36%), Gaps = 50/183 (27%)
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAA-------IWGSSPSIDPIRNHVYIATGNLYSV 113
D +TG+++W +P + AGA +W S D VY+ TG+
Sbjct: 195 DVRTGKLVWAFDTIPPPGEAGPDTAGAWYTRGGPNVWAG-MSADEKLGLVYLPTGS---- 249
Query: 114 PLHIRQCQEENNQTTPTSPD----KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFG 169
+PD +NSL+ALD TGK W+ Q +D+W
Sbjct: 250 ----------------ATPDFYGGDRPGDNLFANSLVALDAATGKRRWHFQTVHHDLW-- 291
Query: 170 ACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIW 229
D D P ++ + R+ V K GF + LDR +G +W
Sbjct: 292 ----------------DYDLPAQPTLVDVPRDGKTVPAVAQPTKQGFVFVLDRRTGKPLW 335
Query: 230 SME 232
+E
Sbjct: 336 PVE 338
|
This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller. Length = 616 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-13
Identities = 46/154 (29%), Positives = 66/154 (42%), Gaps = 28/154 (18%)
Query: 219 ALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGG 278
ALD +G ++W ++ G LGGG A D R+Y +T G
Sbjct: 7 ALDAATGKVLWRVDLGGTALGGGV----AVDGGRLYV-----------------ATGKGE 45
Query: 279 WVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338
VA+DA+ G +LW +G G TVA GV+ + +YA+D +TGK+LWSY
Sbjct: 46 LVALDAATGKLLWRKD--LSGEILGAPTVAGGVVVVVTADGS--LYALDAETGKLLWSYQ 101
Query: 339 TGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFT 372
S +G+ V VGF +
Sbjct: 102 RSLPPLTLRGSS-SPAIVGD--TVIVGFSSGKLV 132
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 1e-12
Identities = 71/312 (22%), Positives = 107/312 (34%), Gaps = 109/312 (34%)
Query: 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSV 113
G +A LDA TG++LW+ + G G ++D +Y+ATG
Sbjct: 2 DGVVAALDAATGKVLWRV-----DLGGTA-------LGGGVAVD--GGRLYVATGK---- 43
Query: 114 PLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNW 173
L+ALD TGK++W K L G
Sbjct: 44 -----------------------------GELVALDAATGKLLWRKDLSG---------- 64
Query: 174 YLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEA 233
+ AP V +VV V G +ALD ++G L+WS +
Sbjct: 65 --------------EILGAP--------TVAGGVVVVVTADGSLYALDAETGKLLWSYQR 102
Query: 234 GPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293
L A + ++ G VA+D G VLW
Sbjct: 103 SLPPLTLRGSSSPAIVGDTVIVGFSS-----------------GKLVALDPKTGKVLWEA 145
Query: 294 --ADPSNGTA-------PGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY 344
A P G+ G V G ++ S QG + A+D+ TGK+LWS + +
Sbjct: 146 PVAAPRGGSEIERLVDITGTPVVDGGRVYASSY--QGRLVALDLATGKVLWSREISS--I 201
Query: 345 GGASVSNGCIYM 356
G +V G +++
Sbjct: 202 NGPAVDGGLLFV 213
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 74/376 (19%), Positives = 118/376 (31%), Gaps = 97/376 (25%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A + GK++W+T L T G +VGT S G L L
Sbjct: 52 AFNATTGKIIWETSLSGKGFLGGT--PAVGNGKIFVGTES--------------GYLYAL 95
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIAT--GNLYSV----- 113
DAK G LW+T + S P+ +Y+ T G LY
Sbjct: 96 DAKDGSELWRTE------------VSDSQLLSPPTYA--DGKIYVGTGDGRLYYCNAETG 141
Query: 114 -PLHIRQCQEEN----NQTTPT-SPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVW 167
+ R P + D + + +++AL+ TG +W +
Sbjct: 142 KVVWNRTSTAPELSLRGGAAPVGAYDVVFVGDGNG-TVVALNTGTGVDIWEFSVS----- 195
Query: 168 FGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSL 227
P G + ++ + Y V + + G+ ALD +SG
Sbjct: 196 --------EPR---GRTELPRMIDSSV---TYV--VVGGYLYSTSYQGYLVALDFESGQF 239
Query: 228 IWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG 287
+WS +A GG + + R+Y G +DAS G
Sbjct: 240 LWSRKAS----GGTST--STDANGRVYVGDGE-----------------GSLYCLDASTG 276
Query: 288 NVLWSTADPSNGTAPGPVTVANG-VLFGGSTYRQGPIYAMDVKTG----KILWSYDTGAT 342
+ LWS P + +G +Y + G ++ Y
Sbjct: 277 DELWSQTVLLGRVLSSPAIYVGVYIYVT--DNAEGYLYCLKDNDGLTVARVEVDY--SQY 332
Query: 343 IYGGASVSNGCIYMGN 358
I G +VS+G +Y G
Sbjct: 333 ILQGPAVSDGWLYYGT 348
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 68/371 (18%), Positives = 108/371 (29%), Gaps = 151/371 (40%)
Query: 8 KLVWKTKLDD-HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGR 66
VW + D + + G Y + G++ LDA+TG+
Sbjct: 41 DQVWSASVGDGGGHYYYRLQPAVAGGKVYAADAD--------------GTVVALDAETGK 86
Query: 67 ILWQTFMLPDNFGKLNE--YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEEN 124
LW+ L+E G G V++ T
Sbjct: 87 RLWRV--------DLDERLSGGVGADG---------GLVFVGTEK--------------- 114
Query: 125 NQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPS 184
++ALD + GK +W +L
Sbjct: 115 ------------------GEVIALDAEDGKELWRAKLSS--------------------- 135
Query: 185 PDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSME-----------A 233
+LS V + +VV G ALD +G +W+ A
Sbjct: 136 ---------EVLS--PPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSA 184
Query: 234 GPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293
P GG + G A G VA++ G LW
Sbjct: 185 SPVIADGGVLVGFAG----------------------------GKLVALNLQTGQPLWEQ 216
Query: 294 --ADPSNGTA-------PGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY 344
A P T G V G ++ +Y QG + A+D+++G++LW D + Y
Sbjct: 217 RVALPKGRTELERLVDVDGDPVVDGGQVYA-VSY-QGRVAALDLRSGRVLWKRDASS--Y 272
Query: 345 GGASVSNGCIY 355
G +V + +Y
Sbjct: 273 QGPAVDDNRLY 283
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|222072 pfam13360, PQQ_2, PQQ-like domain | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-09
Identities = 70/344 (20%), Positives = 104/344 (30%), Gaps = 123/344 (35%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ + GK++W+ L A + G YV T G L L
Sbjct: 7 ALDAATGKVLWRVDLGGTA---LGGGVAVDGGRLYVATGK--------------GELVAL 49
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQC 120
DA TG++LW+ L+ A P++ V + T +
Sbjct: 50 DAATGKLLWRK--------DLSGEILGA-----PTVAG--GVVVVVTAD----------- 83
Query: 121 QEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCP 180
SL ALD +TGK++W Q
Sbjct: 84 ----------------------GSLYALDAETGKLLWSYQ-------------------- 101
Query: 181 PGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGG 240
S ++ + V+ SG ALD +G ++W GG
Sbjct: 102 --RSLPPLTLRGSSSPAIVGDT-----VIVGFSSGKLVALDPKTGKVLWE-APVAAPRGG 153
Query: 241 GAMWGAA-------TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293
+ D R+Y ++ Q G VA+D + G VLWS
Sbjct: 154 SEIERLVDITGTPVVDGGRVY--ASSYQ---------------GRLVALDLATGKVLWSR 196
Query: 294 ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSY 337
S V G+LF G + A+D TG +LW
Sbjct: 197 EISS----INGPAVDGGLLFVVDD--DGELVALDRATGAVLWKN 234
|
This domain contains several repeats of the PQQ repeat. Length = 234 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 6e-09
Identities = 42/173 (24%), Positives = 71/173 (41%), Gaps = 31/173 (17%)
Query: 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNF 265
D+V A +G A + +G +IW G GG A +I+
Sbjct: 39 DMVYAADANGQVSAFNATTGKIIWETSLSGKGFLGG---TPAVGNGKIFV---------- 85
Query: 266 NLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYA 325
+++ + A+DA +G+ LW T + P T A+G ++ G+ G +Y
Sbjct: 86 ---GTESGYL----YALDAKDGSELWRTEVSDSQ-LLSPPTYADGKIYVGT--GDGRLYY 135
Query: 326 MDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLY 378
+ +TGK++W+ + A S+ G +G V VG GN GT +
Sbjct: 136 CNAETGKVVWNRTSTA---PELSLRGGAAPVGAYDVVFVGDGN-----GTVVA 180
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|199837 cd10279, PQQ_ADH_II, PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II) | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 100/464 (21%), Positives = 159/464 (34%), Gaps = 147/464 (31%)
Query: 1 AVKRSNGKLVWKTK-LDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK VW +D IT + KG +G E G+ +G ++
Sbjct: 116 ALDAKTGKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNGGAEFGV--------RGYVSA 167
Query: 60 LDAKTGRILWQTFMLPDN----FGKLNEYAGAAIWGS--------------SPSIDPIRN 101
DA+TG+++W+ + +P N F + A AA W + S + DP +
Sbjct: 168 YDAETGKLVWRFYTVPGNPAKPFEHASLEAAAATWWTGEWWRTGGGGTVWDSITYDPELD 227
Query: 102 HVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSN----SLLALDLDTGKIVW 157
+YI TGN +R P N S++ALD DTG+ W
Sbjct: 228 LLYIGTGNGSPWNRKVR------------------SPGGGDNLFLSSIVALDADTGRYKW 269
Query: 158 YKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEA-PMMLS-MYRNKVKHDIVVAVQKSG 215
+ Q D W D+ P++L+ + + +++ K+G
Sbjct: 270 HYQTTPGDTW--------------------DYTATQPIILADLEIDGKPRKVLMHAPKNG 309
Query: 216 FAWALDRDSGSLI---------WS----MEAG------------------PGGLGG---- 240
F + LDR +G L+ W+ ++ G PG LG
Sbjct: 310 FFYVLDRATGKLLSAEPFVPVNWATGIDLKTGRPIENPEARYTKGPKLVFPGPLGAHNWH 369
Query: 241 --------GAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292
G ++ A + +Y + F P +T +
Sbjct: 370 PMSYNPDTGLVYIPAQEIPAVYEDDPGD----FGYNPLGWNTGITPDATPPPAAAKRALR 425
Query: 293 TA--------DPSNGTA------PGPV-----TVANGVLFGGSTYRQGPIYAMDVKTGKI 333
A DP A PGP A ++F G+ G + A D +TG+
Sbjct: 426 KATRGRLVAWDPVTQKAAWRVEHPGPWNGGVLATAGNLVFQGTA--DGELAAYDARTGEK 483
Query: 334 LWSYDTGATIYGGASVSNGCIYMGNGYK---VTVGFGNKNFTSG 374
LWS+DTG+ I Y +G + V G+G SG
Sbjct: 484 LWSFDTGSGIVAAPMT-----YSVDGEQYVAVLAGWGGAGALSG 522
|
This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller. Length = 549 |
| >gnl|CDD|199836 cd10278, PQQ_MDH, Large subunit of methanol dehydrogenase (moxF) | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 3e-08
Identities = 89/438 (20%), Positives = 145/438 (33%), Gaps = 132/438 (30%)
Query: 1 AVKRSNGKLVWKTKLDDHAR-SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK VWK K D +TM+ K VG S E G+ +G +
Sbjct: 116 ALDAKTGKEVWKVKNGDPKVGETLTMAPLVVKDKVIVGISGGEFGV--------RGYVTA 167
Query: 60 LDAKTGRILWQTF--------MLPDNFGKLNEY------------------AGAAIWGSS 93
D KTG+++W+ + ++ +F N + G WG
Sbjct: 168 YDLKTGKLVWRAYSTGPDKDVLIGPDFNPFNPHDGGKDLGLSTWPGDAWKIGGGTNWGWY 227
Query: 94 PSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTG 153
S DP N VY TGN P +P + S ++ A D DTG
Sbjct: 228 -SYDPKLNLVYYGTGN-----------------PGPWNPTQRPGDNKWSMTIFARDPDTG 269
Query: 154 KIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213
+ W Q+ +D W D D +++ + K ++V +
Sbjct: 270 EAKWAYQMTPHDEW------------------DYDGVNEMILVDQTVDGKKRKLLVHFDR 311
Query: 214 SGFAWALDRDSGSLI-------------WSMEAG--------------------PGGLGG 240
+GF + LDR +G L+ ++ G P +GG
Sbjct: 312 NGFVYTLDRTTGELLSAEKFDPVNNWKGVDLKTGRPVKDPEKSTHMDHNVTDICPSAMGG 371
Query: 241 GAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAG-------------------GWVA 281
++ + + H + +P + + AG + A
Sbjct: 372 KD-QQPSSYSPKTGLFYVPTNHLCMDYEPFEVNYTAGQPYVGATLAMYPGPGGHMGQFKA 430
Query: 282 MDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341
D G W + G + A G++F G+ G A+D KTGK+LW + +
Sbjct: 431 WDPVTGKTKWEIKERFP-VWSGTLATAGGLVFYGTL--DGWFKAVDAKTGKLLWKFKLPS 487
Query: 342 TIYGGASVSNGCIYMGNG 359
I + N Y +G
Sbjct: 488 GI-----IGNPITYKHDG 500
|
Methanol dehydrogenase is a key enzyme in the utilization of C1 compounds as a source of energy and carbon by bacteria. It catalyzes the oxidation of methanol to formaldehyde, transfering two electrons per methanol to cytochrome c(L) as the acceptor. Methanol dehydrogenase belongs to a family of dehydrogenases with pyrroloquinoline quinone (PQQ) as cofactor, which also includes dehydrogenases specific to other alcohols and membrane-bound glucose dehydrogenases. This alignment model for the large subunit contains an 8-bladed beta-propeller; the functional enzyme forms a heterotetramer composed of two large and two small subunits. Length = 553 |
| >gnl|CDD|199834 cd10276, BamB_YfgL, Beta-barrel assembly machinery (Bam) complex component B and related proteins | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 49/249 (19%), Positives = 79/249 (31%), Gaps = 68/249 (27%)
Query: 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNK 202
+ A + TGKI+W L G G P
Sbjct: 48 GQVSAFNATTGKIIWETSLSGKGFLGG----------TPA-------------------- 77
Query: 203 VKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQH 262
V + + +SG+ +ALD GS +W E L + + +IY
Sbjct: 78 VGNGKIFVGTESGYLYALDAKDGSELWRTEVSDSQL----LSPPTYADGKIYVG------ 127
Query: 263 KNFNLKPSKNSTIAGGWVAMDASNGNVLWS-TADPSNGTAPG--PVTVANGVLFGGSTYR 319
T G +A G V+W+ T+ + G A V+F G
Sbjct: 128 -----------TGDGRLYYCNAETGKVVWNRTSTAPELSLRGGAAPVGAYDVVFVGDGN- 175
Query: 320 QGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCI-----YM-GNGYKVTVGFGNK---- 369
G + A++ TG +W + + G + I Y+ GY + +
Sbjct: 176 -GTVVALNTGTGVDIW--EFSVSEPRGRTELPRMIDSSVTYVVVGGYLYSTSYQGYLVAL 232
Query: 370 NFTSGTSLY 378
+F SG L+
Sbjct: 233 DFESGQFLW 241
|
BamB (YflG) is a non-essential component of the beta-barrel assembly machinery (Bam), a multi-subunit complex that inserts proteins with beta-barrel topology into the outer membrane. BamB has been found to interact with BamA, which in turn binds and stabilizes pre-folded beta-barrel proteins; it has been suggested that BamB participates in the stabilization. Length = 358 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 7e-07
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 30/179 (16%)
Query: 206 DIVVAVQKSGFAWALDRDSGSLIWS--MEAGPGGLGGGAMWGAATDERRIYTNIANSQHK 263
V + G +AL+ D+G + WS + L G + +IY
Sbjct: 69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDG----KIYV-------- 116
Query: 264 NFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPI 323
+ G A+DAS G ++WS + P V +G ++ G+ G +
Sbjct: 117 ---------GSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTD--DGHL 165
Query: 324 YAMDVKTGKILWSYDTGAT----IYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLY 378
YA++ TG + W+Y+T A IYG ++++G +Y+G+ N GT +
Sbjct: 166 YALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGS-DGYDGILYALNAEDGTLKW 223
|
Length = 370 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-07
Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 35/166 (21%)
Query: 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNF 265
V A G ALD ++G +W ++ L GG D ++
Sbjct: 66 GKVYAADADGTVVALDAETGKRLWRVDLD-ERLSGGV----GADGGLVFV---------- 110
Query: 266 NLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYA 325
T G +A+DA +G LW + P VANG++ + G + A
Sbjct: 111 -------GTEKGEVIALDAEDGKELWRA--KLSSEVLSPPLVANGLVVVRTN--DGRLTA 159
Query: 326 MDVKTGKILWSYDTGA---TIYGGASVSNGCIYMGNGYKVTVGFGN 368
+D TG+ LW+Y T+ G AS + G V VGF
Sbjct: 160 LDAATGERLWTYSRVTPALTLRGSASP----VIADGG--VLVGFAG 199
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 37/156 (23%), Positives = 65/156 (41%), Gaps = 22/156 (14%)
Query: 207 IVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFN 266
+ + + SG+L+WS+ G GG G A A + +Y
Sbjct: 25 DYLVAVGADLVAVANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYV----------- 73
Query: 267 LKPSKNSTIAGGWVAMDASNGNVLWS-TADPSNGTAPGPVTVANGVLFGGSTYRQGPIYA 325
+++ I A++ G V WS + GP+ ++G ++ GS G +YA
Sbjct: 74 --GTRDGNIF----ALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSWD--GKLYA 125
Query: 326 MDVKTGKILWSYDTGATIY--GGASVSNGCIYMGNG 359
+D TG ++WS + G + Y V +G +Y+G
Sbjct: 126 LDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGTD 161
|
Length = 370 |
| >gnl|CDD|224437 COG1520, COG1520, FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 72/392 (18%), Positives = 120/392 (30%), Gaps = 123/392 (31%)
Query: 1 AVKRSNGKLVWKTKLDDH-ARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
++G L+W L + + G YVGT G++
Sbjct: 37 VANNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTRD--------------GNIFA 82
Query: 60 LDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQ 119
L+ TG + W G + + +G + +Y+ + +
Sbjct: 83 LNPDTGLVKWSY----PLLGAVAQLSGPILGSD--------GKIYVGSWD---------- 120
Query: 120 CQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNC 179
L ALD TG +VW + +GG +
Sbjct: 121 -----------------------GKLYALDASTGTLVWSRNVGGSPYYASPPV------- 150
Query: 180 PPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPG-GL 238
V V G +AL+ D+G+L W+ E L
Sbjct: 151 -----------------------VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSL 187
Query: 239 GGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST--ADP 296
A+ +Y G A++A +G + WS +
Sbjct: 188 SIYGSPAIASGT--VYVGSDGY---------------DGILYALNAEDGTLKWSQKVSQT 230
Query: 297 SNGTA--------PGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS 348
TA GPV V GV G G + +D TG+++WS+ G ++ G+
Sbjct: 231 IGRTAISTTPAVDGGPVYVDGGVYAGSY---GGKLLCLDADTGELIWSFPAGGSV-QGSG 286
Query: 349 VSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380
+ + +G KV +GF + + SLYA
Sbjct: 287 LYTTPVAGADG-KVYIGFTDNDGRGSGSLYAL 317
|
Length = 370 |
| >gnl|CDD|227326 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 58/250 (23%), Positives = 88/250 (35%), Gaps = 64/250 (25%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK- 59
A+ GK+ W + + K Y GTS E G+ + GS+A
Sbjct: 286 ALDADTGKVCWSFA--NKGALNLETGMKDTKDGLYYGTSPPEFGVKGIV---IAGSVADN 340
Query: 60 ------------LDAKTGRILW--------QTFMLPDNFGKLNEYAGAAIWGSSPSIDPI 99
D TG++ W T G+ W +S S D
Sbjct: 341 ESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTAPTAP--GQTYTRNSPNSW-ASASYDAK 397
Query: 100 RNHVYIATGNLYSVPLHIRQCQEENNQTTPT-SPDKCIEPENHSNSLLALDLDTGKIVWY 158
N VY+ GN P + T +P E +S+S++ALD TGK+ W
Sbjct: 398 LNLVYVPMGN--QTP----------DTWGGTRTP----GDEKYSSSIVALDATTGKLKWV 441
Query: 159 KQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAW 218
Q +D+W D D P +L + ++ +V K+GF +
Sbjct: 442 YQTVHHDLW------------------DMDVPAQPTLLDITKDGKVVPALVHPTKNGFIY 483
Query: 219 ALDRDSGSLI 228
LDR +G L+
Sbjct: 484 VLDRRTGELL 493
|
Length = 773 |
| >gnl|CDD|236857 PRK11138, PRK11138, outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 14/94 (14%)
Query: 278 GWV-AMDASNGNVLWST-------ADPSNGTA--PGPVTVANGVLFGGSTYRQGPIYAMD 327
G V A+DA G +WS N +A G VTVA G ++ GS +G +YA++
Sbjct: 79 GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS--EKGQVYALN 136
Query: 328 VKTGKILWSYDTGATIYGGASVSNG--CIYMGNG 359
+ G++ W VS+G ++ NG
Sbjct: 137 AEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNG 170
|
Length = 394 |
| >gnl|CDD|234101 TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 48/186 (25%), Positives = 62/186 (33%), Gaps = 63/186 (33%)
Query: 61 DAKTGRILW--------QTFMLPDN----FGKLNEYAGAAIWGSSPSIDPIRNHVYIATG 108
D TG ++W T N W S S D VY+ G
Sbjct: 342 DVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPN------SW-SVASYDEKLGLVYLPMG 394
Query: 109 NLYSVPLHIRQCQEENNQTTP--TSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDV 166
N TP D+ E +S+SL+ALD TGK W Q +D+
Sbjct: 395 N-----------------QTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDL 437
Query: 167 WFGACNWYLNPNCPPGPS----PDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222
W + + P PS PDAD P +VA K G + LDR
Sbjct: 438 W--------DMDVPAQPSLVDLPDADGTTVPA-------------LVAPTKQGQIYVLDR 476
Query: 223 DSGSLI 228
+G I
Sbjct: 477 RTGEPI 482
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. Length = 764 |
| >gnl|CDD|199835 cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 4e-04
Identities = 60/263 (22%), Positives = 87/263 (33%), Gaps = 89/263 (33%)
Query: 52 TFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLY 111
T + +DAKTG+ LW+ Y P D + V + +Y
Sbjct: 67 TSYNRVFAIDAKTGKELWK-------------YKHRLPEDIRPCCDVVNRGVALYGDKVY 113
Query: 112 SVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGAC 171
L L+ALD TGK+VW K++ Y
Sbjct: 114 FGTL--------------------------DAHLVALDAKTGKVVWKKKVADYKA----- 142
Query: 172 NWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKS-----GFAWALDRDSGS 226
G S AP++ VK ++V V GF ALD ++G
Sbjct: 143 ----------GYS----MTLAPLV-------VKGKVIVGVSGGEFGVRGFIAALDAETGK 181
Query: 227 LIWS-------MEAG-----PGGL---GGGAMWGAAT---DERRIYTNIANSQHKNFNLK 268
+W E G PG GGGA W T + +Y + N N +L+
Sbjct: 182 EVWRTYTVPGPGEPGSTDTWPGDAWKTGGGATWLTGTYDPETNLLYWGVGNPAPWNGDLR 241
Query: 269 PSKNSTIAGGWVAMDASNGNVLW 291
P N + +A+D G + W
Sbjct: 242 PGDNLYTSSV-LALDPDTGKIKW 263
|
This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller. Length = 529 |
| >gnl|CDD|234102 TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 280 VAMDASNGNVLWS--TADPSNG-TAPGPVTVANGVLF----GGSTYRQGPIYAMDVKTGK 332
VA+DA G V+WS D G T V G + GG +G + A D KTGK
Sbjct: 133 VALDAKTGKVVWSKKNGDYKKGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGK 192
Query: 333 ILW 335
++W
Sbjct: 193 LVW 195
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. Length = 526 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 4e-04
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 27/129 (20%)
Query: 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNF 265
V AV G ALD SG ++W +A + G A D+ R+Y
Sbjct: 242 GQVYAVSYQGRVAALDLRSGRVLWKRDAS-------SYQGPAVDDNRLYV---------- 284
Query: 266 NLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYA 325
+ G VA+D +G+ LW + P + ++ G +G ++
Sbjct: 285 -------TDADGVVVALDRRSGSELWKNDELKYRQLTAPAVLGGYLVVGDF---EGYLHW 334
Query: 326 MDVKTGKIL 334
+ + G +
Sbjct: 335 LSREDGSFV 343
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|199833 cd00216, PQQ_DH_like, PQQ-dependent dehydrogenases and related proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 7e-04
Identities = 32/139 (23%), Positives = 46/139 (33%), Gaps = 37/139 (26%)
Query: 219 ALDRDSGSLIWS---------MEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKP 269
ALD D G IWS EA + G A ++Y
Sbjct: 45 ALDADDGKEIWSYDPALKDGWFEACCDLVNRGV----AVWGGKVYI-------------- 86
Query: 270 SKNSTIAGGWVAMDASNGNVLWST---ADPSNGTAPGPVTVANGVLFGGSTYRQ----GP 322
+ G A++A G V W TA V +G++ GS+ + G
Sbjct: 87 ---GVLDGRVYALNAETGKVAWKVKNADVLGGYTATSAPVVVDGLVIIGSSGDEFGVRGY 143
Query: 323 IYAMDVKTGKILWSYDTGA 341
+ A DV TG+ W +
Sbjct: 144 LTAYDVATGEEKWRFYLVM 162
|
This family is composed of dehydrogenases with pyrroloquinoline quinone (PQQ) as a cofactor, such as ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller, and the family also includes distantly related proteins which are not enzymatically active and do not bind PQQ. Length = 434 |
| >gnl|CDD|199838 cd10280, PQQ_mGDH, Membrane-bound PQQ-dependent glucose dehydrogenase | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%)
Query: 289 VLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGP-IYAMDVKTGKILWSYDTGATIYGGA 347
+ T P+ G GPV A G++F +T Q + A D TGK LW A
Sbjct: 528 LPIPTGTPNLG---GPVVTAGGLVFIAAT--QDNYLRAFDKATGKELWEARLPA-----G 577
Query: 348 SVSNGCIYMGNG--YKVTV--GFGNKNFTSGTSLYAF 380
+ Y +G Y V G G+ G S+ A+
Sbjct: 578 GQATPMTYEVDGKQYVVIAAGGHGSLGTKRGDSVIAY 614
|
This bacterial subfamily of enzymes belongs to the dehydrogenase family with pyrroloquinoline quinone (PQQ) as cofactor, and is the only subfamily that is bound to the membrane. Glucose dehydrogenase converts D-glucose to D-glucono-1,5-lactone in a reaction that is coupled with the respiratory chain in the periplasmic oxidation of sugars and alcohols in gram-negative bacteria. Ubiquinone functions as the electron acceptor. The alignment model contains an 8-bladed beta-propeller. Length = 616 |
| >gnl|CDD|234163 TIGR03300, assembly_YfgL, outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 307 VANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGN 358
VA G ++ G + A+D +TGK LW D + GG G +++G
Sbjct: 63 VAGGKVYAAD--ADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGT 112
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ [Protein fate, Protein and peptide secretion and trafficking]. Length = 377 |
| >gnl|CDD|199837 cd10279, PQQ_ADH_II, PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)
Query: 274 TIAGGWVAMDASNGNVLWS--TADPSNG-TAPGPVTVANGVLF---GGSTYR-QGPIYAM 326
T+ G +A+DA G +WS T DP T G VA G + GG+ + +G + A
Sbjct: 109 TLDGRLIALDAKTGKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNGGAEFGVRGYVSAY 168
Query: 327 DVKTGKILWSYDT 339
D +TGK++W + T
Sbjct: 169 DAETGKLVWRFYT 181
|
This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller. Length = 549 |
| >gnl|CDD|199837 cd10279, PQQ_ADH_II, PQQ_like domain of the quinohemoprotein alcohol dehydrogenase (type II) | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 18/94 (19%)
Query: 281 AMDASNGNVLWSTADPSNGTAPGP----------VTVANGVLFGGSTYRQGPIYAMDVKT 330
A+DA G +LW DP G V V +G +F G+ G + A+D KT
Sbjct: 65 ALDARTGKLLW-QYDPEVDRESGRKACCDVVNRGVAVWDGKVFVGTL--DGRLIALDAKT 121
Query: 331 GKILWSYDT-----GATIYGGASVSNGCIYMGNG 359
GK +WS DT TI G V+ G + +GNG
Sbjct: 122 GKEVWSVDTIDPRKPYTITGAPRVAKGKVVIGNG 155
|
This family of monomeric and soluble type II alcohol dehydrogenases utilizes pyrroloquinoline quinone (PQQ) as a cofactor and is related to ethanol, methanol, and membrane-bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller. Length = 549 |
| >gnl|CDD|128836 smart00564, PQQ, beta-propeller repeat | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.003
Identities = 17/35 (48%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 304 PVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338
PV +++G ++ GST G +YA+D KTG+ILW+Y
Sbjct: 1 PVVLSDGTVYVGST--DGTLYALDAKTGEILWTYK 33
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. Length = 33 |
| >gnl|CDD|216242 pfam01011, PQQ, PQQ enzyme repeat | Back alignment and domain information |
|---|
Score = 34.2 bits (79), Expect = 0.004
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 323 IYAMDVKTGKILWSYDTGATIYG 345
+YA+D KTGK+LW + TG
Sbjct: 12 LYALDAKTGKVLWKFKTGGPDDS 34
|
The family represent a single repeat of a beta propeller. This propeller has been found in several enzymes which utilise pyrrolo-quinoline quinone as a prosthetic group. Length = 38 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 100.0 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 100.0 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 100.0 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 100.0 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 100.0 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 100.0 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 100.0 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 99.98 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 99.96 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.95 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 99.94 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 99.94 | |
| COG4993 | 773 | Gcd Glucose dehydrogenase [Carbohydrate transport | 99.92 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 99.91 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 99.86 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.83 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 99.77 | |
| COG4993 | 773 | Gcd Glucose dehydrogenase [Carbohydrate transport | 99.76 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.92 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.79 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.79 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 98.68 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.55 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 98.5 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 98.45 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.41 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.36 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.35 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 98.31 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 98.24 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.18 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 98.17 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 98.17 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.16 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.14 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 98.13 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 98.1 | |
| PF01011 | 38 | PQQ: PQQ enzyme repeat family.; InterPro: IPR00237 | 98.03 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 98.02 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.99 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 97.94 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 97.94 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 97.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.93 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 97.93 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.9 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 97.81 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 97.78 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.72 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 97.68 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 97.57 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.55 | |
| PTZ00421 | 493 | coronin; Provisional | 97.55 | |
| KOG2103 | 910 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.51 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.48 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 97.48 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.45 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 97.45 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 97.45 | |
| PTZ00421 | 493 | coronin; Provisional | 97.41 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 97.4 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 97.4 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.4 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 97.34 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 97.3 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.28 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.27 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 97.27 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 97.26 | |
| PF14269 | 299 | Arylsulfotran_2: Arylsulfotransferase (ASST) | 97.26 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 97.25 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 97.24 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 97.23 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 97.21 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 97.21 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 97.19 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 97.19 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 97.1 | |
| PTZ00420 | 568 | coronin; Provisional | 97.09 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 97.08 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.07 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 97.02 | |
| PF05567 | 335 | Neisseria_PilC: Neisseria PilC beta-propeller doma | 96.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 96.94 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 96.84 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 96.83 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 96.82 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 96.82 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 96.8 | |
| KOG2103 | 910 | consensus Uncharacterized conserved protein [Funct | 96.79 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 96.76 | |
| PTZ00420 | 568 | coronin; Provisional | 96.71 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 96.7 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 96.67 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 96.66 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 96.64 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 96.56 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 96.5 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 96.5 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 96.46 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 96.43 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 96.39 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 96.36 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 96.36 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 96.34 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 96.34 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 96.21 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 96.06 | |
| PF09910 | 339 | DUF2139: Uncharacterized protein conserved in arch | 95.99 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 95.99 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 95.96 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 95.96 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 95.92 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.9 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 95.9 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 95.89 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 95.89 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 95.8 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 95.78 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 95.77 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 95.72 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 95.68 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 95.66 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 95.61 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 95.61 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 95.6 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 95.54 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 95.51 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 95.45 | |
| KOG1027 | 903 | consensus Serine/threonine protein kinase and endo | 95.45 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 95.4 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 95.34 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 95.31 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 95.25 | |
| COG3419 | 1036 | PilY1 Tfp pilus assembly protein, tip-associated a | 95.17 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 95.17 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 94.98 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.91 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 94.91 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 94.88 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 94.77 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 94.76 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.69 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 94.62 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 94.61 | |
| TIGR03547 | 346 | muta_rot_YjhT mutatrotase, YjhT family. Members of | 94.59 | |
| TIGR03032 | 335 | conserved hypothetical protein TIGR03032. This pro | 94.49 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 94.48 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 94.36 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 94.31 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.29 | |
| KOG4693 | 392 | consensus Uncharacterized conserved protein, conta | 94.28 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 94.25 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 94.1 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 94.03 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 93.94 | |
| PLN02153 | 341 | epithiospecifier protein | 93.88 | |
| COG3419 | 1036 | PilY1 Tfp pilus assembly protein, tip-associated a | 93.73 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 93.34 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.22 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 93.2 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 93.16 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 93.12 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 93.1 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 93.1 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 93.04 | |
| PLN02193 | 470 | nitrile-specifier protein | 92.77 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 92.74 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 92.72 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 92.62 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 92.56 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 92.52 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 92.41 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 92.28 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 92.12 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 92.06 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 91.99 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 91.92 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 91.31 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 91.3 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.97 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 90.73 | |
| PRK14131 | 376 | N-acetylneuraminic acid mutarotase; Provisional | 90.69 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 90.69 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 90.66 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 90.36 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 89.97 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 89.96 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 89.91 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 89.74 | |
| PLN02193 | 470 | nitrile-specifier protein | 89.67 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 89.65 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 89.35 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 88.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 88.73 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 88.67 | |
| PF05567 | 335 | Neisseria_PilC: Neisseria PilC beta-propeller doma | 88.44 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 88.12 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 87.91 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 87.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 87.55 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 87.53 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 87.22 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 86.65 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 86.65 | |
| KOG0379 | 482 | consensus Kelch repeat-containing proteins [Genera | 86.64 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 86.64 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 86.62 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 86.49 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 86.42 | |
| PLN02153 | 341 | epithiospecifier protein | 86.41 | |
| cd00028 | 116 | B_lectin Bulb-type mannose-specific lectin. The do | 86.21 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 86.2 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 86.08 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 85.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 85.7 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 85.65 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 84.93 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 84.81 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 84.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 84.63 | |
| smart00108 | 114 | B_lectin Bulb-type mannose-specific lectin. | 84.28 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 83.99 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 83.82 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 83.47 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 82.94 | |
| PF05262 | 489 | Borrelia_P83: Borrelia P83/100 protein; InterPro: | 82.84 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 82.58 | |
| smart00108 | 114 | B_lectin Bulb-type mannose-specific lectin. | 81.91 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 80.76 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 80.42 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 80.23 |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-38 Score=314.09 Aligned_cols=313 Identities=28% Similarity=0.491 Sum_probs=245.7
Q ss_pred CCcCCCCceeeeeecCcCc-cceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHA-RSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~-~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
|||++|||++|++.+.+.. ...+.++|++.+++||++....+.+. +|.|+|||++||+++|+++..+....
T Consensus 134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~--------~G~v~AlD~~TG~~lW~~~~~p~~~~ 205 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGV--------RGYVTAYDAKTGKLVWRRYTVPGDMG 205 (527)
T ss_pred EEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCC--------CcEEEEEECCCCceeEeccCcCCCcc
Confidence 7899999999999875432 34577899999999999886555442 78999999999999999988654211
Q ss_pred --------------------CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCC
Q 040693 80 --------------------KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPE 139 (382)
Q Consensus 80 --------------------~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (382)
.....+|+++|. .+++|++.++||++++|+ +|.....|..++
T Consensus 206 ~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~-~~s~D~~~~lvy~~tGnp-----------------~p~~~~~r~gdn 267 (527)
T TIGR03075 206 YLDKADKPVGGEPGAKTWPGDAWKTGGGATWG-TGSYDPETNLIYFGTGNP-----------------SPWNSHLRPGDN 267 (527)
T ss_pred cccccccccccccccCCCCCCccccCCCCccC-ceeEcCCCCeEEEeCCCC-----------------CCCCCCCCCCCC
Confidence 111247889997 689999999999999983 343345567788
Q ss_pred CCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEE
Q 040693 140 NHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219 (382)
Q Consensus 140 ~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~a 219 (382)
-+...|+|||++|||++|.+|..+++.| +++..+.|+|+++..+|.....|+.++++|.+|+
T Consensus 268 l~~~s~vAld~~TG~~~W~~Q~~~~D~w------------------D~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~v 329 (527)
T TIGR03075 268 LYTSSIVARDPDTGKIKWHYQTTPHDEW------------------DYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYV 329 (527)
T ss_pred ccceeEEEEccccCCEEEeeeCCCCCCc------------------cccCCCCcEEEEeccCCcEEEEEEEeCCCceEEE
Confidence 8889999999999999999999999999 5667799999998878877789999999999999
Q ss_pred EeCCCCCeeee----------eccCC-------------------------CCCCCCcccceee---eCCeEEEEecCcc
Q 040693 220 LDRDSGSLIWS----------MEAGP-------------------------GGLGGGAMWGAAT---DERRIYTNIANSQ 261 (382)
Q Consensus 220 ld~~tG~~~W~----------~~~~~-------------------------~~~~g~~~~~~~~---~~~~v~~~~~~~~ 261 (382)
||++|||.+|. ....+ +...|+..|+++. ..+++|+...+..
T Consensus 330 lDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~ 409 (527)
T TIGR03075 330 LDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVC 409 (527)
T ss_pred EECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEeccccc
Confidence 99999999733 21110 2344566777554 5788998877631
Q ss_pred cc------------cc-----ccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEE
Q 040693 262 HK------------NF-----NLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIY 324 (382)
Q Consensus 262 ~~------------~~-----~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~ 324 (382)
.. .+ ...|. .....+.|.|+|++|||++|+.+.+.+ ...+++...+++||+++. +|.|+
T Consensus 410 ~~~~~~~~~~~~g~~~~~~~~~~~p~-~~~~~g~l~AiD~~tGk~~W~~~~~~p-~~~~~l~t~g~lvf~g~~--~G~l~ 485 (527)
T TIGR03075 410 MDYEPEKVSYKKGAAYLGAGLTIKPP-PDDHMGSLIAWDPITGKIVWEHKEDFP-LWGGVLATAGDLVFYGTL--EGYFK 485 (527)
T ss_pred ccccccccccCCCCceeccccccCCC-CCCCceeEEEEeCCCCceeeEecCCCC-CCCcceEECCcEEEEECC--CCeEE
Confidence 10 01 01121 112368899999999999999987663 456677778899999874 89999
Q ss_pred EEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCce
Q 040693 325 AMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYK 361 (382)
Q Consensus 325 ~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g 361 (382)
|+|.+|||++|++++++.+.++|+. ++|++||....|
T Consensus 486 a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qYv~~~~G 524 (527)
T TIGR03075 486 AFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQYVAVLSG 524 (527)
T ss_pred EEECCCCCEeEEEeCCCCceecCEEEEeCCEEEEEEEec
Confidence 9999999999999999999999998 999999987554
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=286.20 Aligned_cols=332 Identities=27% Similarity=0.397 Sum_probs=232.4
Q ss_pred CCcCCCCceeeeeecCcC--ccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDH--ARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNF 78 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~--~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~ 78 (382)
|||++|||++|++++... ....+.++|++.+++||+++...+. .+|..++.|+|||++||+++|++++.+...
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~-----~~~~~~g~v~alD~~TG~~~W~~~~~~~~~ 198 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEF-----FACGVRGALRAYDVETGKLLWRFYTTEPDP 198 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEecccccc-----ccCCCCcEEEEEECCCCceeeEeeccCCCc
Confidence 689999999999998643 2233688999999999998754332 123347899999999999999998853211
Q ss_pred -CCC--------CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEE
Q 040693 79 -GKL--------NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALD 149 (382)
Q Consensus 79 -~~~--------~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald 149 (382)
..+ ...+++.+|. +|++++.+++||+++++.+.. .+. .. .+...+.+.+.|+|||
T Consensus 199 ~~~~~~~~~~~~~~~~g~~vw~-~pa~d~~~g~V~vg~~~g~~~--~~~------~~-------~~~~~~~~~~~l~Ald 262 (488)
T cd00216 199 NAFPTWGPDRQMWGPGGGTSWA-SPTYDPKTNLVYVGTGNGSPW--NWG------GR-------RTPGDNLYTDSIVALD 262 (488)
T ss_pred CCCCCCCCCcceecCCCCCccC-CeeEeCCCCEEEEECCCCCCC--ccC------Cc-------cCCCCCCceeeEEEEc
Confidence 100 0124566675 689998889999999874211 110 00 1122345568999999
Q ss_pred CCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEee-eCceeecEEEEEccCcEEEEEeCCCCCee
Q 040693 150 LDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMY-RNKVKHDIVVAVQKSGFAWALDRDSGSLI 228 (382)
Q Consensus 150 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~v~~~~~~g~l~ald~~tG~~~ 228 (382)
++||+++|+++....+.|.+ +..++|++.++. .+|.....|++++.+|.++|||++||+++
T Consensus 263 ~~tG~~~W~~~~~~~~~~~~------------------~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~ 324 (488)
T cd00216 263 ADTGKVKWFYQTTPHDLWDY------------------DGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI 324 (488)
T ss_pred CCCCCEEEEeeCCCCCCccc------------------ccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence 99999999999876655522 233567776543 44443467899999999999999999999
Q ss_pred eeeccCCCCCCCCcccceeeeCCeEEEEecCcccccc-ccCCCCCCCCCceEEEEECCCCcEEeeecCCC--------CC
Q 040693 229 WSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNF-NLKPSKNSTIAGGWVAMDASNGNVLWSTADPS--------NG 299 (382)
Q Consensus 229 W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~--------~~ 299 (382)
|+++... .....+.+.||+.......... ...........+.|+|||++||+++|+++... ..
T Consensus 325 W~~~~~~--------~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~ 396 (488)
T cd00216 325 SARPEVE--------QPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFP 396 (488)
T ss_pred eEeEeec--------cccccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCc
Confidence 9988531 1122234788886432110000 00000112346889999999999999998762 12
Q ss_pred CCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceE--EeCCEEEEEeCceeEe----------ecC
Q 040693 300 TAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS--VSNGCIYMGNGYKVTV----------GFG 367 (382)
Q Consensus 300 ~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~--~~~g~lyv~~~~g~~~----------~~~ 367 (382)
...+++++.+++||+++. +|.|+|||.+||+++|+++++..+.++|+ +.++++||.+..|... +++
T Consensus 397 ~~~~~~~~~g~~v~~g~~--dG~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~g~~yv~~~~g~~~~~~~~~~~~~~~~ 474 (488)
T cd00216 397 HWGGSLATAGNLVFAGAA--DGYFRAFDATTGKELWKFRTPSGIQATPMTYEVNGKQYVGVMVGGGGSFPTGMGGVAKLD 474 (488)
T ss_pred ccCcceEecCCeEEEECC--CCeEEEEECCCCceeeEEECCCCceEcCEEEEeCCEEEEEEEecCCccccccccccchhc
Confidence 234566788899999985 99999999999999999999999999998 5699999998776411 112
Q ss_pred CccCCCCCeEEEEEC
Q 040693 368 NKNFTSGTSLYAFCV 382 (382)
Q Consensus 368 ~~~~~~g~~l~~~~~ 382 (382)
..- .-|..|.+|+|
T Consensus 475 ~~~-~~~~~~~~~~l 488 (488)
T cd00216 475 RWT-AMGGYIIAFSL 488 (488)
T ss_pred ccC-CCCCEEEEEEC
Confidence 222 35899999986
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=291.75 Aligned_cols=339 Identities=23% Similarity=0.308 Sum_probs=247.2
Q ss_pred CCcCCCCceeeeeecCc----------Cc--cceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCcee
Q 040693 1 AVKRSNGKLVWKTKLDD----------HA--RSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRIL 68 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~----------~~--~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~l 68 (382)
|||++|||++|++.... .+ ...+.++|++.+++||++....|+ ..+|.+.|.|+|||++||+++
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~----~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADN----YSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEeccccc----ccccCCCcEEEEEECCCCcEe
Confidence 68999999999875321 11 123678999999999998765443 234456899999999999999
Q ss_pred eeeeccCCCCCC---C-CC--CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCc
Q 040693 69 WQTFMLPDNFGK---L-NE--YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHS 142 (382)
Q Consensus 69 W~~~~~~~~~~~---~-~~--~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (382)
|+.+........ . .. .++++.|. .+++|++.+++|+++++.. |+.+ ....+..++.+.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~-~~s~D~~~glvy~ptGn~~--pd~~-------------g~~r~~~~n~y~ 413 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWS-VASYDEKLGLVYLPMGNQT--PDQW-------------GGDRTPADEKYS 413 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccC-ceEEcCCCCeEEEeCCCcc--cccc-------------CCccccCccccc
Confidence 999875322111 1 11 25778886 6899999999999999831 1111 011124567788
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeee-CceeecEEEEEccCcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYR-NKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~g~~~~~v~~~~~~g~l~ald 221 (382)
+.|+|||++|||++|.++..+++.| +++++++|+++++.. +|.....|+.++++|.+++||
T Consensus 414 ~slvALD~~TGk~~W~~Q~~~hD~W------------------D~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlD 475 (764)
T TIGR03074 414 SSLVALDATTGKERWVFQTVHHDLW------------------DMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLD 475 (764)
T ss_pred ceEEEEeCCCCceEEEecccCCccc------------------cccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEE
Confidence 9999999999999999999999999 677889999998865 665677899999999999999
Q ss_pred CCCCCeeeeeccCC------------------------------------------------------------------
Q 040693 222 RDSGSLIWSMEAGP------------------------------------------------------------------ 235 (382)
Q Consensus 222 ~~tG~~~W~~~~~~------------------------------------------------------------------ 235 (382)
++|||++|..+.-+
T Consensus 476 r~tG~~l~~~~e~~vp~~~~~ge~~sptQp~~~~~~~~~~~~~~d~~g~t~~dq~~cr~~~~~~~~~g~~tPps~~~~~~ 555 (764)
T TIGR03074 476 RRTGEPIVPVEEVPVPQGAVPGERYSPTQPFSVLTFGPPTLTESDMWGATPFDQLACRIQFKSLRYEGLYTPPSEQGSLV 555 (764)
T ss_pred CCCCCEEeeceeecCCccCCCCccccccccccccccCCcccchhhccCCChhHhhhhhhhhcccccCCCcCCCCCCceEE
Confidence 99999999854210
Q ss_pred -CCCCCCcccceee---eCCeEEEEecCccc-------------------------------ccccc------CCC-CCC
Q 040693 236 -GGLGGGAMWGAAT---DERRIYTNIANSQH-------------------------------KNFNL------KPS-KNS 273 (382)
Q Consensus 236 -~~~~g~~~~~~~~---~~~~v~~~~~~~~~-------------------------------~~~~~------~~~-~~~ 273 (382)
+...|+.+|++.. +.+++|+...+... ..|.. .|. ..+
T Consensus 556 ~Pg~~Gg~nW~~~a~dP~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~py~~~~~~~~~~~g~p~ 635 (764)
T TIGR03074 556 FPGNLGGFNWGGVAVDPTRQVMFVNPMRLPFVSQLVPRAPGDEAPSGAKGKGTEMGLNPNKGTPYAVNMNPFLSPLGIPC 635 (764)
T ss_pred ecCCcccCCCCCceECCCCCEEEEEChhcceeeEeeeccccccccccccccccccccccCCCCcceeecccccCcccCCC
Confidence 1122444555443 45667766443100 00110 000 011
Q ss_pred --CCCceEEEEECCCCcEEeeecCCC------------------CCCCCcceEEeCCEEEE-eeecCCCcEEEEeCCCCc
Q 040693 274 --TIAGGWVAMDASNGNVLWSTADPS------------------NGTAPGPVTVANGVLFG-GSTYRQGPIYAMDVKTGK 332 (382)
Q Consensus 274 --~~~g~v~a~d~~tG~~~W~~~~~~------------------~~~~~~~~~~~~~~v~~-~~~~~~g~l~~ld~~tG~ 332 (382)
..-|.|.|+|++|||++|+.+... .....+++..++++||+ ++ .++.|+|||.+|||
T Consensus 636 ~~pp~G~l~AiDl~tGk~~W~~~~g~~~~~~p~~~~~~~~~~~g~p~~gG~l~TagglvF~~gt--~d~~l~A~D~~tGk 713 (764)
T TIGR03074 636 QAPPWGYMAAIDLKTGKVVWQHPNGTVRDTGPMGIRMPLPIPIGVPTLGGPLATAGGLVFIGAT--QDNYLRAYDLSTGK 713 (764)
T ss_pred CCCCcEEEEEEECCCCcEeeeeECCccccccccccccccccccCCcccCCcEEEcCCEEEEEeC--CCCEEEEEECCCCc
Confidence 134889999999999999998841 12346678888999998 56 48999999999999
Q ss_pred EeEEEecCCceecceEEe---CCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 333 ILWSYDTGATIYGGASVS---NGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 333 ilw~~~~~~~~~~~p~~~---~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
++|+.+++.+..++|+.+ +|+.||.-..|... .+..+.|..|++|.|
T Consensus 714 ~lW~~~l~~~~~a~P~tY~~~~GkQYVvi~aGg~~---~~~~~~Gd~~~afaL 763 (764)
T TIGR03074 714 ELWKARLPAGGQATPMTYMGKDGKQYVVIVAGGHG---SSGTKRGDYVIAYAL 763 (764)
T ss_pred eeeEeeCCCCcccCCEEEEecCCEEEEEEEeCCCc---cCCCCCCCEEEEEeC
Confidence 999999999999998764 69999986654311 256677999999986
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=275.32 Aligned_cols=267 Identities=22% Similarity=0.327 Sum_probs=209.0
Q ss_pred CCcCCCCceeeeeecCcCc-------cceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeec
Q 040693 1 AVKRSNGKLVWKTKLDDHA-------RSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFM 73 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~-------~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~ 73 (382)
|||++|||++|++++.... +..+.++|++.+++||++.. ++.|+|||++||+++|++++
T Consensus 83 ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~--------------~g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 83 ALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE--------------KGQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred EEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC--------------CCEEEEEECCCCCCcccccC
Confidence 6899999999999886421 11234578999999999885 88999999999999999987
Q ss_pred cCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCC
Q 040693 74 LPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTG 153 (382)
Q Consensus 74 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG 153 (382)
.... .++|++. ++.||+.+++ +.|+|||++||
T Consensus 149 ~~~~-------------~ssP~v~--~~~v~v~~~~---------------------------------g~l~ald~~tG 180 (394)
T PRK11138 149 AGEA-------------LSRPVVS--DGLVLVHTSN---------------------------------GMLQALNESDG 180 (394)
T ss_pred CCce-------------ecCCEEE--CCEEEEECCC---------------------------------CEEEEEEccCC
Confidence 4221 1357776 3688887764 89999999999
Q ss_pred cEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeecc
Q 040693 154 KIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEA 233 (382)
Q Consensus 154 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~ 233 (382)
+++|+++....... ....++|++. ++.++++..++.++++|.++|+++|+++.
T Consensus 181 ~~~W~~~~~~~~~~-------------------~~~~~sP~v~--------~~~v~~~~~~g~v~a~d~~~G~~~W~~~~ 233 (394)
T PRK11138 181 AVKWTVNLDVPSLT-------------------LRGESAPATA--------FGGAIVGGDNGRVSAVLMEQGQLIWQQRI 233 (394)
T ss_pred CEeeeecCCCCccc-------------------ccCCCCCEEE--------CCEEEEEcCCCEEEEEEccCChhhheecc
Confidence 99999986532100 0012578776 56788899999999999999999999875
Q ss_pred CCCCCC------CCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE
Q 040693 234 GPGGLG------GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV 307 (382)
Q Consensus 234 ~~~~~~------g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~ 307 (382)
..+... ......|.+.++.||+. ...+.++|+|+++|+++|+.+... ...+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~sP~v~~~~vy~~-----------------~~~g~l~ald~~tG~~~W~~~~~~----~~~~~~ 292 (394)
T PRK11138 234 SQPTGATEIDRLVDVDTTPVVVGGVVYAL-----------------AYNGNLVALDLRSGQIVWKREYGS----VNDFAV 292 (394)
T ss_pred ccCCCccchhcccccCCCcEEECCEEEEE-----------------EcCCeEEEEECCCCCEEEeecCCC----ccCcEE
Confidence 432100 01234566788999987 345889999999999999998653 123457
Q ss_pred eCCEEEEeeecCCCcEEEEeCCCCcEeEEEec-CCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 308 ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT-GATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 308 ~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~-~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.+++||+.+. +|.|+|||+++|+++|+.+. .....++|++.+++||+.+.+|. ++++|..+|+.+|.+.+
T Consensus 293 ~~~~vy~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~~g~l~v~~~~G~---l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 293 DGGRIYLVDQ--NDRVYALDTRGGVELWSQSDLLHRLLTAPVLYNGYLVVGDSEGY---LHWINREDGRFVAQQKV 363 (394)
T ss_pred ECCEEEEEcC--CCeEEEEECCCCcEEEcccccCCCcccCCEEECCEEEEEeCCCE---EEEEECCCCCEEEEEEc
Confidence 8899999985 99999999999999998864 34567899999999999999886 67899999999999864
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=261.27 Aligned_cols=263 Identities=22% Similarity=0.322 Sum_probs=206.7
Q ss_pred CCcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGK 80 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~ 80 (382)
|||++||+++|+++++. .+.++|++.++++|+++. ++.|+|||++||+++|+.++....
T Consensus 79 a~d~~tG~~~W~~~~~~----~~~~~p~v~~~~v~v~~~--------------~g~l~ald~~tG~~~W~~~~~~~~--- 137 (377)
T TIGR03300 79 ALDAETGKRLWRVDLDE----RLSGGVGADGGLVFVGTE--------------KGEVIALDAEDGKELWRAKLSSEV--- 137 (377)
T ss_pred EEEccCCcEeeeecCCC----CcccceEEcCCEEEEEcC--------------CCEEEEEECCCCcEeeeeccCcee---
Confidence 68999999999999864 356789999999999885 889999999999999998874221
Q ss_pred CCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEe
Q 040693 81 LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160 (382)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~ 160 (382)
.++|.+. ++.+|+...+ +.|+|+|++||+++|+++
T Consensus 138 ----------~~~p~v~--~~~v~v~~~~---------------------------------g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 138 ----------LSPPLVA--NGLVVVRTND---------------------------------GRLTALDAATGERLWTYS 172 (377)
T ss_pred ----------ecCCEEE--CCEEEEECCC---------------------------------CeEEEEEcCCCceeeEEc
Confidence 1356665 3578887654 889999999999999998
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC-
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG- 239 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~- 239 (382)
....... ....++|++. ++.++++..++.++++|+++|+.+|+.+...+...
T Consensus 173 ~~~~~~~-------------------~~~~~sp~~~--------~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~ 225 (377)
T TIGR03300 173 RVTPALT-------------------LRGSASPVIA--------DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRT 225 (377)
T ss_pred cCCCcee-------------------ecCCCCCEEE--------CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCC
Confidence 7543110 0112567765 56788888899999999999999999875421100
Q ss_pred -----CCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEE
Q 040693 240 -----GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFG 314 (382)
Q Consensus 240 -----g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~ 314 (382)
......+.+.++.+|+. ...+.++++|+++|+++|+.+... ...+.+.++.||+
T Consensus 226 ~~~~~~~~~~~p~~~~~~vy~~-----------------~~~g~l~a~d~~tG~~~W~~~~~~----~~~p~~~~~~vyv 284 (377)
T TIGR03300 226 ELERLVDVDGDPVVDGGQVYAV-----------------SYQGRVAALDLRSGRVLWKRDASS----YQGPAVDDNRLYV 284 (377)
T ss_pred chhhhhccCCccEEECCEEEEE-----------------EcCCEEEEEECCCCcEEEeeccCC----ccCceEeCCEEEE
Confidence 01123455678899987 345889999999999999998532 2344577899999
Q ss_pred eeecCCCcEEEEeCCCCcEeEEE-ecCCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 315 GSTYRQGPIYAMDVKTGKILWSY-DTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 315 ~~~~~~g~l~~ld~~tG~ilw~~-~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.+. +|.|+++|.++|+++|+. ..+....++|++.+++||+.+.+|. +|++|..+|+++|.+.+
T Consensus 285 ~~~--~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i~g~~l~~~~~~G~---l~~~d~~tG~~~~~~~~ 348 (377)
T TIGR03300 285 TDA--DGVVVALDRRSGSELWKNDELKYRQLTAPAVVGGYLVVGDFEGY---LHWLSREDGSFVARLKT 348 (377)
T ss_pred ECC--CCeEEEEECCCCcEEEccccccCCccccCEEECCEEEEEeCCCE---EEEEECCCCCEEEEEEc
Confidence 884 899999999999999998 5566678899999999999998887 68899999999999863
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-31 Score=260.53 Aligned_cols=268 Identities=19% Similarity=0.350 Sum_probs=203.2
Q ss_pred CCCceeeeeecCcCcc-ceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCC
Q 040693 5 SNGKLVWKTKLDDHAR-SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNE 83 (382)
Q Consensus 5 ~tGk~~W~~~~~~~~~-~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~ 83 (382)
-++|++|++++++... ....++|++.+++||++.. ++.|+|||++||+++|++++..... .
T Consensus 42 ~~~~~~W~~~~g~g~~~~~~~~sPvv~~~~vy~~~~--------------~g~l~ald~~tG~~~W~~~~~~~~~----~ 103 (394)
T PRK11138 42 FTPTTVWSTSVGDGVGDYYSRLHPAVAYNKVYAADR--------------AGLVKALDADTGKEIWSVDLSEKDG----W 103 (394)
T ss_pred CCcceeeEEEcCCCCccceeeeccEEECCEEEEECC--------------CCeEEEEECCCCcEeeEEcCCCccc----c
Confidence 4689999999865322 1245689999999999886 7899999999999999998854210 0
Q ss_pred CcC--ccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 84 YAG--AAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 84 ~~g--~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
++. +....+.|+++ ++.||+++.+ +.|+|||++||+++|+++.
T Consensus 104 ~~~~~~~~~~~~~~v~--~~~v~v~~~~---------------------------------g~l~ald~~tG~~~W~~~~ 148 (394)
T PRK11138 104 FSKNKSALLSGGVTVA--GGKVYIGSEK---------------------------------GQVYALNAEDGEVAWQTKV 148 (394)
T ss_pred cccccccccccccEEE--CCEEEEEcCC---------------------------------CEEEEEECCCCCCcccccC
Confidence 000 01112245555 4688987654 8999999999999999987
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGG 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~ 241 (382)
... +.++|++. ++.|++.+.++.++|||++||+++|+++...+.....
T Consensus 149 ~~~------------------------~~ssP~v~--------~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 149 AGE------------------------ALSRPVVS--------DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCc------------------------eecCCEEE--------CCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 643 23678887 6789999999999999999999999998653211111
Q ss_pred cccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC---------CCCcceEEeCCEE
Q 040693 242 AMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG---------TAPGPVTVANGVL 312 (382)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~---------~~~~~~~~~~~~v 312 (382)
....|++.++.+|+. ...+.++++|+++|+++|+.+..... .....+.+.++.|
T Consensus 197 ~~~sP~v~~~~v~~~-----------------~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~v 259 (394)
T PRK11138 197 GESAPATAFGGAIVG-----------------GDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVV 259 (394)
T ss_pred CCCCCEEECCEEEEE-----------------cCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEE
Confidence 224566677888887 34588999999999999998753311 0123344678899
Q ss_pred EEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 313 FGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 313 ~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
|+.+. +|.++|+|+++|+++|+.+.+. ...|++.+++||+.+.+|. ++++|..+|+++|.+.
T Consensus 260 y~~~~--~g~l~ald~~tG~~~W~~~~~~--~~~~~~~~~~vy~~~~~g~---l~ald~~tG~~~W~~~ 321 (394)
T PRK11138 260 YALAY--NGNLVALDLRSGQIVWKREYGS--VNDFAVDGGRIYLVDQNDR---VYALDTRGGVELWSQS 321 (394)
T ss_pred EEEEc--CCeEEEEECCCCCEEEeecCCC--ccCcEEECCEEEEEcCCCe---EEEEECCCCcEEEccc
Confidence 99884 8999999999999999988653 3467889999999998876 6889999999999763
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-30 Score=252.82 Aligned_cols=258 Identities=23% Similarity=0.419 Sum_probs=201.1
Q ss_pred CCCceeeeeecCcCcc-ceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCC
Q 040693 5 SNGKLVWKTKLDDHAR-SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNE 83 (382)
Q Consensus 5 ~tGk~~W~~~~~~~~~-~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~ 83 (382)
.+|+++|+++++.... .....+|++.+++||++.. ++.|+|||++||+++|++++.....
T Consensus 38 ~~~~~~W~~~~~~~~~~~~~~~~p~v~~~~v~v~~~--------------~g~v~a~d~~tG~~~W~~~~~~~~~----- 98 (377)
T TIGR03300 38 VKVDQVWSASVGDGVGHYYLRLQPAVAGGKVYAADA--------------DGTVVALDAETGKRLWRVDLDERLS----- 98 (377)
T ss_pred CcceeeeEEEcCCCcCccccccceEEECCEEEEECC--------------CCeEEEEEccCCcEeeeecCCCCcc-----
Confidence 5799999999865321 1245789999999999986 7899999999999999999853221
Q ss_pred CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCC
Q 040693 84 YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGG 163 (382)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~ 163 (382)
..|+++ ++.+|+++.+ +.|+|||++||+++|+.....
T Consensus 99 --------~~p~v~--~~~v~v~~~~---------------------------------g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 99 --------GGVGAD--GGLVFVGTEK---------------------------------GEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred --------cceEEc--CCEEEEEcCC---------------------------------CEEEEEECCCCcEeeeeccCc
Confidence 246665 5689987754 899999999999999987654
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcc
Q 040693 164 YDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAM 243 (382)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~ 243 (382)
. +.++|++. ++.|++...++.|+++|.++|+++|+++...+.......
T Consensus 136 ~------------------------~~~~p~v~--------~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~ 183 (377)
T TIGR03300 136 E------------------------VLSPPLVA--------NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGS 183 (377)
T ss_pred e------------------------eecCCEEE--------CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCC
Confidence 3 22567775 678888888999999999999999999875432111112
Q ss_pred cceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC---------CCCcceEEeCCEEEE
Q 040693 244 WGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG---------TAPGPVTVANGVLFG 314 (382)
Q Consensus 244 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~---------~~~~~~~~~~~~v~~ 314 (382)
..+.+.++.+|+. ...+.++++|+++|+++|+.+..... ...+.+.+.++.+|+
T Consensus 184 ~sp~~~~~~v~~~-----------------~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~ 246 (377)
T TIGR03300 184 ASPVIADGGVLVG-----------------FAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYA 246 (377)
T ss_pred CCCEEECCEEEEE-----------------CCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEE
Confidence 3455566788886 34588999999999999997753211 012334567889999
Q ss_pred eeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 315 GSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 315 ~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.+. +|.++++|+++|+++|+.+.+ ...+|++.+++||+.+.+|. ++++|..+|+++|.+
T Consensus 247 ~~~--~g~l~a~d~~tG~~~W~~~~~--~~~~p~~~~~~vyv~~~~G~---l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 247 VSY--QGRVAALDLRSGRVLWKRDAS--SYQGPAVDDNRLYVTDADGV---VVALDRRSGSELWKN 305 (377)
T ss_pred EEc--CCEEEEEECCCCcEEEeeccC--CccCceEeCCEEEEECCCCe---EEEEECCCCcEEEcc
Confidence 885 899999999999999999854 35788899999999998877 688999999999987
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-30 Score=259.22 Aligned_cols=300 Identities=22% Similarity=0.340 Sum_probs=196.3
Q ss_pred CCcCCCCceeeeeecCcCc----cceeeeceEEEc-CEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccC
Q 040693 1 AVKRSNGKLVWKTKLDDHA----RSFITMSGTYYK-GAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLP 75 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~----~~~~~~~p~v~~-~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~ 75 (382)
|||++|||++|+++..... ...+...+.+.+ ++||+++. ++.|+|||++||+++|++++..
T Consensus 75 AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------------~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 75 ALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------------DGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC--------------CCeEEEEECCCCCEeeeecCCC
Confidence 6899999999999875420 011222334557 99999886 8999999999999999999854
Q ss_pred CCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcE
Q 040693 76 DNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKI 155 (382)
Q Consensus 76 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~ 155 (382)
.... .....++|.+.. +.+|+++.... ...+...+.|+|||++||++
T Consensus 141 ~~~~-------~~~i~ssP~v~~--~~v~vg~~~~~------------------------~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 141 QVPP-------GYTMTGAPTIVK--KLVIIGSSGAE------------------------FFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CcCc-------ceEecCCCEEEC--CEEEEeccccc------------------------cccCCCCcEEEEEECCCCce
Confidence 3100 001124677764 68888764310 00012358999999999999
Q ss_pred EEEEecCCCcccccccccCCCC-CCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCc------------------E
Q 040693 156 VWYKQLGGYDVWFGACNWYLNP-NCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSG------------------F 216 (382)
Q Consensus 156 ~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g------------------~ 216 (382)
+|+++........... +...+ .|... ...+.++|++. ..++.|++++.++ .
T Consensus 188 ~W~~~~~~~~~~~~~~-~~~~~~~~~~~---g~~vw~~pa~d------~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~ 257 (488)
T cd00216 188 LWRFYTTEPDPNAFPT-WGPDRQMWGPG---GGTSWASPTYD------PKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDS 257 (488)
T ss_pred eeEeeccCCCcCCCCC-CCCCcceecCC---CCCccCCeeEe------CCCCEEEEECCCCCCCccCCccCCCCCCceee
Confidence 9999885331100000 00000 00000 01122455553 2267888887665 7
Q ss_pred EEEEeCCCCCeeeeeccCCCCCCC-Cccccee------eeCC---eEEEEecCccccccccCCCCCCCCCceEEEEECCC
Q 040693 217 AWALDRDSGSLIWSMEAGPGGLGG-GAMWGAA------TDER---RIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASN 286 (382)
Q Consensus 217 l~ald~~tG~~~W~~~~~~~~~~g-~~~~~~~------~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~t 286 (382)
|+|||.+||+++|+++......-. .....+. ++++ .||++ ...|.++|||++|
T Consensus 258 l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g-----------------~~~G~l~ald~~t 320 (488)
T cd00216 258 IVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHA-----------------PKNGFFYVLDRTT 320 (488)
T ss_pred EEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEE-----------------CCCceEEEEECCC
Confidence 999999999999999865321100 0111111 1222 46665 4568899999999
Q ss_pred CcEEeeecCCCCCCCCcceEEeCCEEEEeee----------------cCCCcEEEEeCCCCcEeEEEecC---------C
Q 040693 287 GNVLWSTADPSNGTAPGPVTVANGVLFGGST----------------YRQGPIYAMDVKTGKILWSYDTG---------A 341 (382)
Q Consensus 287 G~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~----------------~~~g~l~~ld~~tG~ilw~~~~~---------~ 341 (382)
|+++|+.+..... +....++||+.+. ..+|.|+|||++||+++|+.+.+ .
T Consensus 321 G~~~W~~~~~~~~-----~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~ 395 (488)
T cd00216 321 GKLISARPEVEQP-----MAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGF 395 (488)
T ss_pred CcEeeEeEeeccc-----cccCCceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCC
Confidence 9999998864211 1223377877531 12689999999999999999987 2
Q ss_pred cee-cceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 342 TIY-GGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 342 ~~~-~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
... +++++.++.||+++.+|. +|++|.+||+++|.+.+
T Consensus 396 ~~~~~~~~~~g~~v~~g~~dG~---l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 396 PHWGGSLATAGNLVFAGAADGY---FRAFDATTGKELWKFRT 434 (488)
T ss_pred cccCcceEecCCeEEEECCCCe---EEEEECCCCceeeEEEC
Confidence 333 456789999999998876 79999999999999975
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.6e-27 Score=236.64 Aligned_cols=296 Identities=26% Similarity=0.418 Sum_probs=189.3
Q ss_pred CCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCC
Q 040693 4 RSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNE 83 (382)
Q Consensus 4 ~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~ 83 (382)
.++.++.|+++++.. ..+.++|++.+++||+++. .+.|+|||++||+++|+++........+ .
T Consensus 44 v~~L~~~W~~~~g~~--~g~~stPvv~~g~vyv~s~--------------~g~v~AlDa~TGk~lW~~~~~~~~~~~~-~ 106 (527)
T TIGR03075 44 VKKLQPAWTFSLGKL--RGQESQPLVVDGVMYVTTS--------------YSRVYALDAKTGKELWKYDPKLPDDVIP-V 106 (527)
T ss_pred hccceEEEEEECCCC--CCcccCCEEECCEEEEECC--------------CCcEEEEECCCCceeeEecCCCCccccc-c
Confidence 356889999998532 2367899999999999885 7899999999999999998743211000 0
Q ss_pred CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCC
Q 040693 84 YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGG 163 (382)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~ 163 (382)
.... .....+++. ++.||+++.+ +.|+|||++|||++|+++...
T Consensus 107 ~~~~-~~~rg~av~--~~~v~v~t~d---------------------------------g~l~ALDa~TGk~~W~~~~~~ 150 (527)
T TIGR03075 107 MCCD-VVNRGVALY--DGKVFFGTLD---------------------------------ARLVALDAKTGKVVWSKKNGD 150 (527)
T ss_pred cccc-cccccceEE--CCEEEEEcCC---------------------------------CEEEEEECCCCCEEeeccccc
Confidence 0000 000123443 3578887654 899999999999999998753
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc------CcEEEEEeCCCCCeeeeeccCCCC
Q 040693 164 YDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK------SGFAWALDRDSGSLIWSMEAGPGG 237 (382)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~------~g~l~ald~~tG~~~W~~~~~~~~ 237 (382)
... .+.+.++|++. ++.|+++.. +|.|+|||++||+++|++...+..
T Consensus 151 ~~~-------------------~~~~tssP~v~--------~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~ 203 (527)
T TIGR03075 151 YKA-------------------GYTITAAPLVV--------KGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGD 203 (527)
T ss_pred ccc-------------------cccccCCcEEE--------CCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCC
Confidence 310 23356789888 567777643 689999999999999998765321
Q ss_pred --------------------------CCCCcccceee-e--CCeEEEEecCccccccccCCCCC----------------
Q 040693 238 --------------------------LGGGAMWGAAT-D--ERRIYTNIANSQHKNFNLKPSKN---------------- 272 (382)
Q Consensus 238 --------------------------~~g~~~~~~~~-~--~~~v~~~~~~~~~~~~~~~~~~~---------------- 272 (382)
..+...|.... | .++||+.+.+...-....+|+-+
T Consensus 204 ~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~ 283 (527)
T TIGR03075 204 MGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI 283 (527)
T ss_pred cccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE
Confidence 12445666544 3 67999998773220001111110
Q ss_pred -------------------------------------CCCCceEEEEECCCCcEEeee----------cCC--CC-CC--
Q 040693 273 -------------------------------------STIAGGWVAMDASNGNVLWST----------ADP--SN-GT-- 300 (382)
Q Consensus 273 -------------------------------------~~~~g~v~a~d~~tG~~~W~~----------~~~--~~-~~-- 300 (382)
....|.+++||.+|||++|.. .+. .. +.
T Consensus 284 ~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~ 363 (527)
T TIGR03075 284 KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEV 363 (527)
T ss_pred EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccC
Confidence 123344555555555554221 000 00 00
Q ss_pred ------------------------CCcceEEe--CCEEEEeeec-------------------------------CCCcE
Q 040693 301 ------------------------APGPVTVA--NGVLFGGSTY-------------------------------RQGPI 323 (382)
Q Consensus 301 ------------------------~~~~~~~~--~~~v~~~~~~-------------------------------~~g~l 323 (382)
.-.+.+++ .+++|+.+.. ..|.|
T Consensus 364 ~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l 443 (527)
T TIGR03075 364 PEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSL 443 (527)
T ss_pred hhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeE
Confidence 00011222 2455555431 02469
Q ss_pred EEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 324 YAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 324 ~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.|||++|||++|+++.+....+++++ .++.+|+++.+|. ++++|.+||++||.+++
T Consensus 444 ~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~---l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 444 IAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGY---FKAFDAKTGEELWKFKT 500 (527)
T ss_pred EEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCe---EEEEECCCCCEeEEEeC
Confidence 99999999999999887777777755 5566667666766 79999999999999985
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=204.20 Aligned_cols=227 Identities=28% Similarity=0.481 Sum_probs=168.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+|.|+|+|+.||+++|+..+.+... +. . +.++. .++.+|+.+.+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~-------~~-~--~~~~~--~~~~v~~~~~~------------------------ 45 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIG-------GP-V--ATAVP--DGGRVYVASGD------------------------ 45 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCS-------SE-E--ETEEE--ETTEEEEEETT------------------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCC-------Cc-c--ceEEE--eCCEEEEEcCC------------------------
Confidence 6899999999999999998843221 10 0 01222 45789998654
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|+|+|+.||+++|++...... ...|.+. ++.|++...
T Consensus 46 ---------~~l~~~d~~tG~~~W~~~~~~~~------------------------~~~~~~~--------~~~v~v~~~ 84 (238)
T PF13360_consen 46 ---------GNLYALDAKTGKVLWRFDLPGPI------------------------SGAPVVD--------GGRVYVGTS 84 (238)
T ss_dssp ---------SEEEEEETTTSEEEEEEECSSCG------------------------GSGEEEE--------TTEEEEEET
T ss_pred ---------CEEEEEECCCCCEEEEeeccccc------------------------cceeeec--------ccccccccc
Confidence 89999999999999999985431 1235444 788888888
Q ss_pred CcEEEEEeCCCCCeeeee-ccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 214 SGFAWALDRDSGSLIWSM-EAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~-~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
++.++++|.+||+++|+. ....+.........+.+.++.+|+.. ..+.|+++|++||+++|+
T Consensus 85 ~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~g~l~~~d~~tG~~~w~ 147 (238)
T PF13360_consen 85 DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT-----------------SSGKLVALDPKTGKLLWK 147 (238)
T ss_dssp TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE-----------------TCSEEEEEETTTTEEEEE
T ss_pred eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe-----------------ccCcEEEEecCCCcEEEE
Confidence 889999999999999994 54322122222334455788888873 358899999999999999
Q ss_pred ecCCCCCCC---------CcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeE
Q 040693 293 TADPSNGTA---------PGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVT 363 (382)
Q Consensus 293 ~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~ 363 (382)
......... .+.+++.++.+|+.+. ++.++++|.++|+.+|+.+ .......+...++.||+.+.++.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~g~~~~~d~~tg~~~w~~~-~~~~~~~~~~~~~~l~~~~~~~~- 223 (238)
T PF13360_consen 148 YPVGEPRGSSPISSFSDINGSPVISDGRVYVSSG--DGRVVAVDLATGEKLWSKP-ISGIYSLPSVDGGTLYVTSSDGR- 223 (238)
T ss_dssp EESSTT-SS--EEEETTEEEEEECCTTEEEEECC--TSSEEEEETTTTEEEEEEC-SS-ECECEECCCTEEEEEETTTE-
T ss_pred eecCCCCCCcceeeecccccceEEECCEEEEEcC--CCeEEEEECCCCCEEEEec-CCCccCCceeeCCEEEEEeCCCE-
Confidence 988542211 2445566779999885 7878999999999999777 55566668999999999997655
Q ss_pred eecCCccCCCCCeEEEE
Q 040693 364 VGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 364 ~~~~~~~~~~g~~l~~~ 380 (382)
++++|..||+.+|.+
T Consensus 224 --l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 224 --LYALDLKTGKVVWQQ 238 (238)
T ss_dssp --EEEEETTTTEEEEEE
T ss_pred --EEEEECCCCCEEeEC
Confidence 688999999999986
|
... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-24 Score=194.81 Aligned_cols=225 Identities=29% Similarity=0.467 Sum_probs=160.4
Q ss_pred CCcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGK 80 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~ 80 (382)
|+|++||+++|+..+... .......++..++.+|++.. ++.|+|+|++||+++|++++.....
T Consensus 7 ~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~v~~~~~--------------~~~l~~~d~~tG~~~W~~~~~~~~~-- 69 (238)
T PF13360_consen 7 ALDPRTGKELWSYDLGPG-IGGPVATAVPDGGRVYVASG--------------DGNLYALDAKTGKVLWRFDLPGPIS-- 69 (238)
T ss_dssp EEETTTTEEEEEEECSSS-CSSEEETEEEETTEEEEEET--------------TSEEEEEETTTSEEEEEEECSSCGG--
T ss_pred EEECCCCCEEEEEECCCC-CCCccceEEEeCCEEEEEcC--------------CCEEEEEECCCCCEEEEeecccccc--
Confidence 689999999999998432 22233346679999999864 8899999999999999999832221
Q ss_pred CCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEE-
Q 040693 81 LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK- 159 (382)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~- 159 (382)
..|.+. ++.+|+.+.+ +.|++||.+||+++|+.
T Consensus 70 -----------~~~~~~--~~~v~v~~~~---------------------------------~~l~~~d~~tG~~~W~~~ 103 (238)
T PF13360_consen 70 -----------GAPVVD--GGRVYVGTSD---------------------------------GSLYALDAKTGKVLWSIY 103 (238)
T ss_dssp -----------SGEEEE--TTEEEEEETT---------------------------------SEEEEEETTTSCEEEEEE
T ss_pred -----------ceeeec--ccccccccce---------------------------------eeeEecccCCcceeeeec
Confidence 124444 4688887754 79999999999999995
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG 239 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 239 (382)
....... .......+.+. ++.++++..++.++++|++||+++|+++...+...
T Consensus 104 ~~~~~~~-------------------~~~~~~~~~~~--------~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~ 156 (238)
T PF13360_consen 104 LTSSPPA-------------------GVRSSSSPAVD--------GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS 156 (238)
T ss_dssp E-SSCTC-------------------STB--SEEEEE--------TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred ccccccc-------------------ccccccCceEe--------cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence 4442210 00011223332 67888888899999999999999999987432211
Q ss_pred C------CcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEE
Q 040693 240 G------GAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLF 313 (382)
Q Consensus 240 g------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~ 313 (382)
. .....+...++.+|+. ...+.++++|.++|+.+|+..... ....+...++.+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~~~-----------------~~~g~~~~~d~~tg~~~w~~~~~~---~~~~~~~~~~~l~ 216 (238)
T PF13360_consen 157 SPISSFSDINGSPVISDGRVYVS-----------------SGDGRVVAVDLATGEKLWSKPISG---IYSLPSVDGGTLY 216 (238)
T ss_dssp --EEEETTEEEEEECCTTEEEEE-----------------CCTSSEEEEETTTTEEEEEECSS----ECECEECCCTEEE
T ss_pred cceeeecccccceEEECCEEEEE-----------------cCCCeEEEEECCCCCEEEEecCCC---ccCCceeeCCEEE
Confidence 1 1123344466788887 334668999999999999777322 2332457789999
Q ss_pred EeeecCCCcEEEEeCCCCcEeEEE
Q 040693 314 GGSTYRQGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 314 ~~~~~~~g~l~~ld~~tG~ilw~~ 337 (382)
+.+. ++.|+++|++||+++|+.
T Consensus 217 ~~~~--~~~l~~~d~~tG~~~W~~ 238 (238)
T PF13360_consen 217 VTSS--DGRLYALDLKTGKVVWQQ 238 (238)
T ss_dssp EEET--TTEEEEEETTTTEEEEEE
T ss_pred EEeC--CCEEEEEECCCCCEEeEC
Confidence 9884 899999999999999974
|
... |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=221.99 Aligned_cols=282 Identities=21% Similarity=0.282 Sum_probs=186.6
Q ss_pred cCCCCceeeeeecCcCcc------ceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCC
Q 040693 3 KRSNGKLVWKTKLDDHAR------SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPD 76 (382)
Q Consensus 3 d~~tGk~~W~~~~~~~~~------~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~ 76 (382)
+.++.|+.|+++.++... ..+.++|++.+|+||+++. .+.|+|||++|||++|+++....
T Consensus 160 NV~~L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~--------------~~~V~ALDa~TGk~lW~~d~~~~ 225 (764)
T TIGR03074 160 NVGNLKVAWTYHTGDLKTPDDPGEATFQATPLKVGDTLYLCTP--------------HNKVIALDAATGKEKWKFDPKLK 225 (764)
T ss_pred cccCceEEEEEECCCccccccccccccccCCEEECCEEEEECC--------------CCeEEEEECCCCcEEEEEcCCCC
Confidence 345788999998764211 3467899999999999885 78999999999999999998533
Q ss_pred CCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEE
Q 040693 77 NFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIV 156 (382)
Q Consensus 77 ~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~ 156 (382)
.... +.....++..|....... ......++|..++++++..+.+++|+|||++|||++
T Consensus 226 ~~~~-------------~~~~~cRGvay~~~p~~~---------~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 226 TEAG-------------RQHQTCRGVSYYDAPAAA---------AGPAAPAAPADCARRIILPTSDARLIALDADTGKLC 283 (764)
T ss_pred cccc-------------cccccccceEEecCCccc---------ccccccccccccCCEEEEecCCCeEEEEECCCCCEE
Confidence 2110 000112344444321100 001122457778888888888899999999999999
Q ss_pred EEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc----------CcEEEEEeCCCCC
Q 040693 157 WYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK----------SGFAWALDRDSGS 226 (382)
Q Consensus 157 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~----------~g~l~ald~~tG~ 226 (382)
|++.....-.|. .... ......+.+.++|++. ++.|+++.. +|.|+|||++||+
T Consensus 284 W~fg~~G~vdl~-------~~~g-~~~~g~~~~ts~P~V~--------~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk 347 (764)
T TIGR03074 284 EDFGNNGTVDLT-------AGMG-TTPPGYYYPTSPPLVA--------GTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA 347 (764)
T ss_pred EEecCCCceeee-------cccC-cCCCcccccccCCEEE--------CCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence 998764432121 0000 0111134567889988 677887742 6899999999999
Q ss_pred eeeeeccCCCC------------CCCCcccceee---eCCeEEEEecCccccccccCC-CCCCCCCceEEEEECCCCcEE
Q 040693 227 LIWSMEAGPGG------------LGGGAMWGAAT---DERRIYTNIANSQHKNFNLKP-SKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 227 ~~W~~~~~~~~------------~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~-~~~~~~~g~v~a~d~~tG~~~ 290 (382)
++|+++...+. ..+...|.... ..+++|+...+....-+.... .......+.|+|+|++|||++
T Consensus 348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~ 427 (764)
T TIGR03074 348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER 427 (764)
T ss_pred EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence 99999864211 12334455444 468999988764432222211 123456789999999999999
Q ss_pred eeecCCCCC-----CCCcceEEe----CC----EEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 291 WSTADPSNG-----TAPGPVTVA----NG----VLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 291 W~~~~~~~~-----~~~~~~~~~----~~----~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
|++..-... ....+++++ ++ .|+.++ ++|.+++||.+|||++|..+
T Consensus 428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT--KQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEecccCCccccccccCCceEEeeecCCCcEeeEEEEEC--CCCEEEEEECCCCCEEeece
Confidence 999762211 123344332 44 677777 59999999999999999864
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-23 Score=197.70 Aligned_cols=340 Identities=25% Similarity=0.349 Sum_probs=236.8
Q ss_pred CCcCCCCceeeeeecCc------------CccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCcee
Q 040693 1 AVKRSNGKLVWKTKLDD------------HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRIL 68 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~------------~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~l 68 (382)
|||++|||++|++.... +..+...|.|.+....++++.+..++....+ ..|.+.++|..||+++
T Consensus 286 ALdA~tGkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e----~sgVir~fdv~tG~l~ 361 (773)
T COG4993 286 ALDADTGKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWE----PSGVIRGFDVLTGKLT 361 (773)
T ss_pred EEeCCCCcEeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeec----cCccccccccccCceE
Confidence 68999999999976331 1123345677788888888777665554433 3578999999999999
Q ss_pred eeeeccCCCCCCC------CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCc
Q 040693 69 WQTFMLPDNFGKL------NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHS 142 (382)
Q Consensus 69 W~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (382)
|..+...+....+ ...+++++|. ++++|++-++||++.+|+ .|+.| +.+++ ..+..+.
T Consensus 362 w~~D~gnpD~t~p~~~g~tyt~nspn~W~-~~SyD~~lnlVy~p~Gn~--~pd~w-----g~trt--------p~dekys 425 (773)
T COG4993 362 WAGDPGNPDPTAPTAPGQTYTRNSPNSWA-SASYDAKLNLVYVPMGNQ--TPDTW-----GGTRT--------PGDEKYS 425 (773)
T ss_pred EccCCCCCCCCCCCCCCceeecCCCCccc-ccccCCCCCeEEEeCCCC--Chhhc-----cCCCC--------ccccccc
Confidence 9998754332222 2357889996 799999999999999995 44444 33443 3455678
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
..++|+|+.||+.+|.++..+++.| +++.+++|++.++..+|.....++..+++|++|.+|+
T Consensus 426 ssivAlD~~TG~~kW~yQtvhhDlW------------------DmDvp~qp~L~D~~~DG~~vpalv~ptk~G~~YVlDR 487 (773)
T COG4993 426 SSIVALDATTGKLKWVYQTVHHDLW------------------DMDVPAQPTLLDITKDGKVVPALVHPTKNGFIYVLDR 487 (773)
T ss_pred ceeEEecCCCcceeeeeeccCcchh------------------cccCCCCceEEEeecCCcEeeeeecccccCcEEEEEc
Confidence 9999999999999999999999999 6778899999999989988888999999999999999
Q ss_pred CCCCeeeeeccCC---------------C----------CCCCCcccce-----------------------eeeCCeEE
Q 040693 223 DSGSLIWSMEAGP---------------G----------GLGGGAMWGA-----------------------ATDERRIY 254 (382)
Q Consensus 223 ~tG~~~W~~~~~~---------------~----------~~~g~~~~~~-----------------------~~~~~~v~ 254 (382)
.||+++=.++..+ + ......+|+. ...+..+|
T Consensus 488 rtGe~lv~~~evp~p~gA~~~d~~~ptqp~s~l~~~~a~pLtE~dmwg~t~fdqlvCri~f~~~ryeg~ytpPst~gsl~ 567 (773)
T COG4993 488 RTGELLVPIPEVPVPQGAIEGDYTAPTQPFSGLPFRPAPPLTEADMWGATMFDQLVCRIAFGGLRYEGRYTPPSTQGSLY 567 (773)
T ss_pred CCCcccccccccCCccccccccccCCCCcccCCCCCCCCCCCcccccCCchhhceechhhhcCccccccccCCCCCeeEE
Confidence 9999874443210 0 0000001110 01122233
Q ss_pred EEecCcc---------------------------------c---------------------cccc------cCCCC---
Q 040693 255 TNIANSQ---------------------------------H---------------------KNFN------LKPSK--- 271 (382)
Q Consensus 255 ~~~~~~~---------------------------------~---------------------~~~~------~~~~~--- 271 (382)
+..+... . ..|. +.|..
T Consensus 568 ~PgN~g~fnwg~~sVdp~r~~~fg~p~~laf~s~~~prd~~~~~~~g~~~~g~e~gv~~~~g~Py~V~~gpflsp~glpc 647 (773)
T COG4993 568 VPGNHGMFNWGGVSVDPVRQVTFGNPYYLAFVSKLVPRDPVGPMENGAAGDGTEGGVVPNYGEPYGVWMGPFLSPGGLPC 647 (773)
T ss_pred EeccccceeccceEeccccceEecCcchhhheeeccccCCCCCcccccccCCcccccccCCCCcceeeeccccCCcCccc
Confidence 3221100 0 0000 01111
Q ss_pred CCCCCceEEEEECCCCcEEeeecCCCC--------------CCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEE
Q 040693 272 NSTIAGGWVAMDASNGNVLWSTADPSN--------------GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 272 ~~~~~g~v~a~d~~tG~~~W~~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~ 337 (382)
.....|.+.++|++|||++|+.+.... ....+|+.+.++.+|.+.. .+.+|.++|..+||.+|+.
T Consensus 648 qap~wGyv~a~DlkTgk~~wk~~~gt~~d~~p~plp~~~g~pt~Ggp~~t~Ggv~f~a~~-~dqYLrayd~~~G~~lW~a 726 (773)
T COG4993 648 QAPPWGYVKAIDLKTGKELWKHRNGTVYDMTPVPLPFKVGFPTLGGPIGTAGGVAFIAAT-GDQYLRAYDGTGGKQLWQA 726 (773)
T ss_pred ccCCcceeeeeeccccceeeeccCCccccCcccCcccccccccCCCccccccceEEEecc-hheeeeeeeccCCceeeee
Confidence 013358899999999999999443221 2235677788898888764 5889999999999999999
Q ss_pred ecCCceecceEE---eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 338 DTGATIYGGASV---SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 338 ~~~~~~~~~p~~---~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
..+.+..++|+. .+++.|+.-+.|.-. .+-.+-|+.+-+|+|
T Consensus 727 rlpaGGq~tPmty~v~~GkqYvvi~agghg---s~gtk~GDyviAyaL 771 (773)
T COG4993 727 RLPAGGQATPMTYTVAGGKQYVVISAGGHG---SFGTKMGDYVIAYAL 771 (773)
T ss_pred ccccCCcCCCceeecCCCceEEEEEcCCCC---ccCcCCCceEEEEeC
Confidence 998887877765 567788876554422 255677888888875
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=190.75 Aligned_cols=273 Identities=24% Similarity=0.462 Sum_probs=189.0
Q ss_pred cCCCCceeeeeecCcCccceeeec-eEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 3 KRSNGKLVWKTKLDDHARSFITMS-GTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 3 d~~tGk~~W~~~~~~~~~~~~~~~-p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+..+|+++|...+........... |+..++++|++.. +|.|+|+|+++|+++|+..+....
T Consensus 39 ~~~~g~~~W~~~~~~~~~~~~~~~~~~~~dg~v~~~~~--------------~G~i~A~d~~~g~~~W~~~~~~~~---- 100 (370)
T COG1520 39 NNTSGTLLWSVSLGSGGGGIYAGPAPADGDGTVYVGTR--------------DGNIFALNPDTGLVKWSYPLLGAV---- 100 (370)
T ss_pred cccCcceeeeeecccCccceEeccccEeeCCeEEEecC--------------CCcEEEEeCCCCcEEecccCcCcc----
Confidence 345799999987544322233333 4899999999975 889999999999999998875300
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
.. .+.|.+.. .+.||+++.+ +.++|||..||+++|++..
T Consensus 101 ------~~-~~~~~~~~-~G~i~~g~~~---------------------------------g~~y~ld~~~G~~~W~~~~ 139 (370)
T COG1520 101 ------AQ-LSGPILGS-DGKIYVGSWD---------------------------------GKLYALDASTGTLVWSRNV 139 (370)
T ss_pred ------ee-ccCceEEe-CCeEEEeccc---------------------------------ceEEEEECCCCcEEEEEec
Confidence 00 12344443 4679998765 6899999999999999998
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGG 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~ 241 (382)
.. . .. +.+.|++. +..|+..+.+++++|+|.+||+.+|+++...+ ....
T Consensus 140 ~~-~-~~--------------------~~~~~v~~--------~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~~ 188 (370)
T COG1520 140 GG-S-PY--------------------YASPPVVG--------DGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSLS 188 (370)
T ss_pred CC-C-eE--------------------EecCcEEc--------CcEEEEecCCCeEEEEEccCCcEEEEEecCCc-cccc
Confidence 76 1 00 11333333 67888887889999999999999999887653 2222
Q ss_pred cccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec----CCCC-----CCCCcceEEeCCEE
Q 040693 242 AMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA----DPSN-----GTAPGPVTVANGVL 312 (382)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~----~~~~-----~~~~~~~~~~~~~v 312 (382)
....+.+.++.+|+...+ . .+.++++|+.+|+.+|+.+ .... +....+.+..++.+
T Consensus 189 ~~~~~~~~~~~vy~~~~~--------------~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~ 253 (370)
T COG1520 189 IYGSPAIASGTVYVGSDG--------------Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGV 253 (370)
T ss_pred cccCceeecceEEEecCC--------------C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcE
Confidence 333344678899987331 1 3579999999999999953 3221 11122222334444
Q ss_pred EEeeecCCCcEEEEeCCCCcEeEEEecCC-----ceecceEE-eCCEEEEEeCcee---EeecCCccCCCCCe--EEEEE
Q 040693 313 FGGSTYRQGPIYAMDVKTGKILWSYDTGA-----TIYGGASV-SNGCIYMGNGYKV---TVGFGNKNFTSGTS--LYAFC 381 (382)
Q Consensus 313 ~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-----~~~~~p~~-~~g~lyv~~~~g~---~~~~~~~~~~~g~~--l~~~~ 381 (382)
|.... .+.++|+|..+|+++|+++.+. ..+..+.. .+|++|+...... ...+|+++..+|+. +|.|.
T Consensus 254 ~~~~~--~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~ 331 (370)
T COG1520 254 YAGSY--GGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYIGFTDNDGRGSGSLYALADVPGGTLLKWSYP 331 (370)
T ss_pred EEEec--CCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEEEEeccccccccceEEEeccCCCeeEEEEEe
Confidence 55553 7889999999999999999962 33444444 4999999865433 34567788788888 88886
Q ss_pred C
Q 040693 382 V 382 (382)
Q Consensus 382 ~ 382 (382)
.
T Consensus 332 ~ 332 (370)
T COG1520 332 V 332 (370)
T ss_pred C
Confidence 3
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-19 Score=173.09 Aligned_cols=262 Identities=25% Similarity=0.427 Sum_probs=176.8
Q ss_pred CCcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGK 80 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~ 80 (382)
|+|+++|+++|+..+.. ....+.+.+++.++++|+++. ++.++|||..||+++|+++... .
T Consensus 82 A~d~~~g~~~W~~~~~~-~~~~~~~~~~~~~G~i~~g~~--------------~g~~y~ld~~~G~~~W~~~~~~-~--- 142 (370)
T COG1520 82 ALNPDTGLVKWSYPLLG-AVAQLSGPILGSDGKIYVGSW--------------DGKLYALDASTGTLVWSRNVGG-S--- 142 (370)
T ss_pred EEeCCCCcEEecccCcC-cceeccCceEEeCCeEEEecc--------------cceEEEEECCCCcEEEEEecCC-C---
Confidence 68999999999998743 012333444566799999996 8899999999999999999843 0
Q ss_pred CCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEe
Q 040693 81 LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160 (382)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~ 160 (382)
..|...+++. ...||+.+. ++.++|||+.||+++|+++
T Consensus 143 -------~~~~~~~v~~--~~~v~~~s~---------------------------------~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 143 -------PYYASPPVVG--DGTVYVGTD---------------------------------DGHLYALNADTGTLKWTYE 180 (370)
T ss_pred -------eEEecCcEEc--CcEEEEecC---------------------------------CCeEEEEEccCCcEEEEEe
Confidence 1122234443 357888653 3899999999999999998
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc--CcEEEEEeCCCCCeeeeeccCCCCC
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK--SGFAWALDRDSGSLIWSMEAGPGGL 238 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~--~g~l~ald~~tG~~~W~~~~~~~~~ 238 (382)
.... . .....++|.+. .+.++.... ++.++++|+++|+.+|+.+......
T Consensus 181 ~~~~-~-------------------~~~~~~~~~~~--------~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~ 232 (370)
T COG1520 181 TPAP-L-------------------SLSIYGSPAIA--------SGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIG 232 (370)
T ss_pred cCCc-c-------------------ccccccCceee--------cceEEEecCCCcceEEEEEccCCcEeeeeeeecccC
Confidence 8652 0 11133555543 678888877 7789999999999999964332111
Q ss_pred CCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC----CCCCCcceEEeCCEEEE
Q 040693 239 GGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS----NGTAPGPVTVANGVLFG 314 (382)
Q Consensus 239 ~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~----~~~~~~~~~~~~~~v~~ 314 (382)
.......+.+..+.|++.... +. ....+.++|+|..+|+++|+++.+. ......+....++.+|+
T Consensus 233 ~~~~~~~~~~~~~~v~v~~~~-----~~------~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~ 301 (370)
T COG1520 233 RTAISTTPAVDGGPVYVDGGV-----YA------GSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYI 301 (370)
T ss_pred cccccccccccCceEEECCcE-----EE------EecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEE
Confidence 000001123333444433110 00 0344679999999999999999852 12223333334677777
Q ss_pred eeecC----CCcEEEEeCCCCcE--eEEEecCC-ceecceEEeCCEEEEEeCcee
Q 040693 315 GSTYR----QGPIYAMDVKTGKI--LWSYDTGA-TIYGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 315 ~~~~~----~g~l~~ld~~tG~i--lw~~~~~~-~~~~~p~~~~g~lyv~~~~g~ 362 (382)
..... .+.+++++...|.. +|.++..+ .....++..++.+|....++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~g~~~~~w~~~~~g~~~~~~~~~~~g~~y~~~~~~~ 356 (370)
T COG1520 302 GFTDNDGRGSGSLYALADVPGGTLLKWSYPVGGGYSLSTVAGSDGTLYFGGDDGR 356 (370)
T ss_pred EEeccccccccceEEEeccCCCeeEEEEEeCCCceecccceeccCeEEecccCCc
Confidence 65311 24689999877888 99999887 445777889999999988865
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-18 Score=150.90 Aligned_cols=254 Identities=18% Similarity=0.271 Sum_probs=184.3
Q ss_pred CCcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGK 80 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~ 80 (382)
|+|.++|++.|+.-+ +..+..++.+.+|.|++|-. .|.||.|+.+||++.|.+...+...
T Consensus 37 avd~~sG~~~We~il----g~RiE~sa~vvgdfVV~GCy--------------~g~lYfl~~~tGs~~w~f~~~~~vk-- 96 (354)
T KOG4649|consen 37 AVDPQSGNLIWEAIL----GVRIECSAIVVGDFVVLGCY--------------SGGLYFLCVKTGSQIWNFVILETVK-- 96 (354)
T ss_pred EecCCCCcEEeehhh----CceeeeeeEEECCEEEEEEc--------------cCcEEEEEecchhheeeeeehhhhc--
Confidence 689999999999988 45588899999999999873 8999999999999999998765443
Q ss_pred CCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEe
Q 040693 81 LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160 (382)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~ 160 (382)
+.+..|.+.+++|.++.+ +.+||||+++-.-+|+.+
T Consensus 97 -----------~~a~~d~~~glIycgshd---------------------------------~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 97 -----------VRAQCDFDGGLIYCGSHD---------------------------------GNFYALDPKTYGCVYKSK 132 (354)
T ss_pred -----------cceEEcCCCceEEEecCC---------------------------------CcEEEecccccceEEecc
Confidence 468889999999998865 899999999999999988
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCC--CeeeeeccCCCCC
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSG--SLIWSMEAGPGGL 238 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG--~~~W~~~~~~~~~ 238 (382)
.++. +..+|++.. -++.+|+....|.+.+...+++ ..+|..+...+
T Consensus 133 cgG~------------------------~f~sP~i~~------g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~P-- 180 (354)
T KOG4649|consen 133 CGGG------------------------TFVSPVIAP------GDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGP-- 180 (354)
T ss_pred cCCc------------------------eeccceecC------CCceEEEEeccceEEEEccCCCCcceehhhhcCCc--
Confidence 7765 336788873 2678999999999999999999 89999986543
Q ss_pred CCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCC---c-c----eEEe--
Q 040693 239 GGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAP---G-P----VTVA-- 308 (382)
Q Consensus 239 ~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~---~-~----~~~~-- 308 (382)
....|..-+..+.++ ..+|.+.++| ..|+.+|+...+++.++. + | +...
T Consensus 181 ---iF~splcv~~sv~i~-----------------~VdG~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~ 239 (354)
T KOG4649|consen 181 ---IFASPLCVGSSVIIT-----------------TVDGVLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENE 239 (354)
T ss_pred ---cccCceeccceEEEE-----------------EeccEEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecC
Confidence 222233334444443 3457777777 567888876655532111 0 1 0111
Q ss_pred ----------CCEEEEeee------------------------------cCCCcEEEE---------eCCCCcE--eEEE
Q 040693 309 ----------NGVLFGGST------------------------------YRQGPIYAM---------DVKTGKI--LWSY 337 (382)
Q Consensus 309 ----------~~~v~~~~~------------------------------~~~g~l~~l---------d~~tG~i--lw~~ 337 (382)
+.+++.... ..+|+++.| +.+.|++ +.+.
T Consensus 240 ~Cf~~~~p~~ghL~w~~~~g~t~~vy~~p~l~F~~h~~~~S~~~ll~~~s~dgkv~il~~~~sl~~~~s~~g~lq~~~~~ 319 (354)
T KOG4649|consen 240 NCFCAPLPIAGHLLWATQSGTTLHVYLSPKLRFDLHSPGISYPKLLRRSSGDGKVMILMTSKSLAEISSNGGELQNLEAI 319 (354)
T ss_pred CeEEEeccccceEEEEecCCcEEEEEeCcccceeccCCCCcchhhhhhhcCCCcEEEEEecccccccccCCCccceEEEe
Confidence 111111100 046777777 6667766 5566
Q ss_pred ecCCceecceEEeCCEEEEEeCceeEeecCCccCCCC
Q 040693 338 DTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSG 374 (382)
Q Consensus 338 ~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g 374 (382)
+++..++++|.+.+++|+++-.+.- ++++|..++
T Consensus 320 el~~eIFsSPvii~grl~igcRDdY---v~cldl~~~ 353 (354)
T KOG4649|consen 320 ELSNEIFSSPVIIDGRLLIGCRDDY---VRCLDLDTW 353 (354)
T ss_pred ecCcccccCCeEEccEEEEEEccCe---EEEEecccc
Confidence 8888899999999999999877633 455655543
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-16 Score=140.86 Aligned_cols=244 Identities=17% Similarity=0.291 Sum_probs=179.2
Q ss_pred eeeeecCcCccceeeeceEEE-c---CEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCc
Q 040693 10 VWKTKLDDHARSFITMSGTYY-K---GAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYA 85 (382)
Q Consensus 10 ~W~~~~~~~~~~~~~~~p~v~-~---~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~ 85 (382)
+|...+ ..-+.++|+++ + -.||+++. .+.+.|+|+.+|++.|+.-++....
T Consensus 2 rW~vd~----~kCVDaspLVV~~dskT~v~igSH--------------s~~~~avd~~sG~~~We~ilg~RiE------- 56 (354)
T KOG4649|consen 2 RWAVDL----RKCVDASPLVVCNDSKTLVVIGSH--------------SGIVIAVDPQSGNLIWEAILGVRIE------- 56 (354)
T ss_pred ceeccc----hhhccCCcEEEecCCceEEEEecC--------------CceEEEecCCCCcEEeehhhCceee-------
Confidence 677776 34566777755 4 56888885 8899999999999999988853322
Q ss_pred CccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCc
Q 040693 86 GAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYD 165 (382)
Q Consensus 86 g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 165 (382)
+++.+- ++.|+++.-+ +.+|.|+.+||++.|.+...+.
T Consensus 57 ------~sa~vv--gdfVV~GCy~---------------------------------g~lYfl~~~tGs~~w~f~~~~~- 94 (354)
T KOG4649|consen 57 ------CSAIVV--GDFVVLGCYS---------------------------------GGLYFLCVKTGSQIWNFVILET- 94 (354)
T ss_pred ------eeeEEE--CCEEEEEEcc---------------------------------CcEEEEEecchhheeeeeehhh-
Confidence 345553 4678887654 8999999999999999988754
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc
Q 040693 166 VWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG 245 (382)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~ 245 (382)
+..+|... -+.+.|+.++.|+++||||+.+-.-.|+.+. .|+....
T Consensus 95 -----------------------vk~~a~~d------~~~glIycgshd~~~yalD~~~~~cVykskc-----gG~~f~s 140 (354)
T KOG4649|consen 95 -----------------------VKVRAQCD------FDGGLIYCGSHDGNFYALDPKTYGCVYKSKC-----GGGTFVS 140 (354)
T ss_pred -----------------------hccceEEc------CCCceEEEecCCCcEEEecccccceEEeccc-----CCceecc
Confidence 23444443 2368999999999999999999999999774 3455566
Q ss_pred eee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCC--cEEeeecCCCCCCCCcceEEeCCEEEEeeecCCC
Q 040693 246 AAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG--NVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQG 321 (382)
Q Consensus 246 ~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG--~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g 321 (382)
|+. .++.+|+. ..+|.|.|+.++++ ...|.....++ .-++|+ .-+..+..++. +|
T Consensus 141 P~i~~g~~sly~a-----------------~t~G~vlavt~~~~~~~~~w~~~~~~P-iF~spl-cv~~sv~i~~V--dG 199 (354)
T KOG4649|consen 141 PVIAPGDGSLYAA-----------------ITAGAVLAVTKNPYSSTEFWAATRFGP-IFASPL-CVGSSVIITTV--DG 199 (354)
T ss_pred ceecCCCceEEEE-----------------eccceEEEEccCCCCcceehhhhcCCc-cccCce-eccceEEEEEe--cc
Confidence 665 36789987 55699999999999 89999887663 334444 45566666665 99
Q ss_pred cEEEEeCCCCcEeEEEecCCceecceEEe---CCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 322 PIYAMDVKTGKILWSYDTGATIYGGASVS---NGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 322 ~l~~ld~~tG~ilw~~~~~~~~~~~p~~~---~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.|.+|| ..|+++||..+.+++++.|.-. ...+++.+.+ = +++.-+-.|-++|.+
T Consensus 200 ~l~~f~-~sG~qvwr~~t~GpIf~~Pc~s~Ps~q~i~~~~~~-C---f~~~~p~~ghL~w~~ 256 (354)
T KOG4649|consen 200 VLTSFD-ESGRQVWRPATKGPIFMEPCESRPSCQQISLENEN-C---FCAPLPIAGHLLWAT 256 (354)
T ss_pred EEEEEc-CCCcEEEeecCCCceecccccCCCcceEEEEecCC-e---EEEeccccceEEEEe
Confidence 999999 6799999999999998887653 2344444332 1 234444446666654
|
|
| >COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-17 Score=156.67 Aligned_cols=270 Identities=21% Similarity=0.273 Sum_probs=169.1
Q ss_pred CCceeeeeecCcCcc------ceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 6 NGKLVWKTKLDDHAR------SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 6 tGk~~W~~~~~~~~~------~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
+-++.|++..++-+. .....+|+.++|.+|+.+. ..+++|||++|||++|+++...+..-
T Consensus 183 nL~~AWty~TGD~k~~~d~~e~t~e~tPLkvgdtlYvcTp--------------hn~v~ALDa~TGkekWkydp~~~~nv 248 (773)
T COG4993 183 NLQVAWTYRTGDVKQPEDPGETTNEVTPLKVGDTLYVCTP--------------HNRVFALDAATGKEKWKYDPNLKSNV 248 (773)
T ss_pred ccceeEEEecCcccCCCCcccccccccceEECCEEEEecC--------------cceeEEeeccCCceeeecCCCCCCCc
Confidence 457889999765321 1246789999999999775 78999999999999999997533211
Q ss_pred CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEE
Q 040693 80 KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~ 159 (382)
.+-+ .+ .++.-|..... ..+.-|..|++..+.+.+|+|||++|||++|++
T Consensus 249 ~~~~------------~t-CrgVsy~~a~a-----------------~~k~pc~~rIflpt~DarlIALdA~tGkvc~~F 298 (773)
T COG4993 249 DPQH------------QT-CRGVSYGAAKA-----------------DAKSPCPRRIFLPTADARLIALDADTGKVCWSF 298 (773)
T ss_pred cccc------------cc-ccceecccccc-----------------cccCCCceeEEeecCCceEEEEeCCCCcEehee
Confidence 1000 00 11111221111 111227777888888899999999999999998
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc---------cCcEEEEEeCCCCCeeee
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ---------KSGFAWALDRDSGSLIWS 230 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~---------~~g~l~ald~~tG~~~W~ 230 (382)
...+.-. +...+ .+.+...+--.+.|.+.. ..+|+.+. ..|.+.++|..||+.+|.
T Consensus 299 a~~Ga~~-------l~tgm-~~~k~g~y~~tS~p~~~~-------~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~ 363 (773)
T COG4993 299 ANKGALN-------LETGM-KDTKDGLYYGTSPPEFGV-------KGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWA 363 (773)
T ss_pred ccCceee-------eeccC-CCCCCCeEeecCCCcccc-------eeEEEeeccCCCceeeccCccccccccccCceEEc
Confidence 7654311 00001 111111233334444431 33444432 247899999999999999
Q ss_pred eccCCCC------------CCCCcccceee---eCCeEEEEecCcccccccc--CCCCCCCCCceEEEEECCCCcEEeee
Q 040693 231 MEAGPGG------------LGGGAMWGAAT---DERRIYTNIANSQHKNFNL--KPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 231 ~~~~~~~------------~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~--~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
.+...+. ..+...|+.+. +-++||+...+.....+.. .|.- ...+..++|+|+.||+.+|.+
T Consensus 364 ~D~gnpD~t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~d-ekysssivAlD~~TG~~kW~y 442 (773)
T COG4993 364 GDPGNPDPTAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGD-EKYSSSIVALDATTGKLKWVY 442 (773)
T ss_pred cCCCCCCCCCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCccc-ccccceeEEecCCCcceeeee
Confidence 9875431 23445677665 4689999998865555543 3332 236788999999999999998
Q ss_pred cCCCCCCC-----CcceEE----eCC---EEEEeeecCCCcEEEEeCCCCcEeEEE
Q 040693 294 ADPSNGTA-----PGPVTV----ANG---VLFGGSTYRQGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 294 ~~~~~~~~-----~~~~~~----~~~---~v~~~~~~~~g~l~~ld~~tG~ilw~~ 337 (382)
..--...+ .-+..+ ++. .++..+ ++|.+|++|..|||++=.+
T Consensus 443 QtvhhDlWDmDvp~qp~L~D~~~DG~~vpalv~pt--k~G~~YVlDRrtGe~lv~~ 496 (773)
T COG4993 443 QTVHHDLWDMDVPAQPTLLDITKDGKVVPALVHPT--KNGFIYVLDRRTGELLVPI 496 (773)
T ss_pred eccCcchhcccCCCCceEEEeecCCcEeeeeeccc--ccCcEEEEEcCCCcccccc
Confidence 64331111 222222 232 233334 6899999999999987654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.5e-07 Score=84.74 Aligned_cols=280 Identities=11% Similarity=0.048 Sum_probs=156.3
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccC-ccccccccccccccceEEEEeCccCceeeeeeccCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSS-IEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGK 80 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~-~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~ 80 (382)
||.++++++=+.+.+..+.. + .+ -.+..+|++... .+..+ -..+..|..+|.+|++++.+..+.++...
T Consensus 32 iD~~~~~v~g~i~~G~~P~~-~-~s--pDg~~lyva~~~~~R~~~-----G~~~d~V~v~D~~t~~~~~~i~~p~~p~~- 101 (352)
T TIGR02658 32 IDGEAGRVLGMTDGGFLPNP-V-VA--SDGSFFAHASTVYSRIAR-----GKRTDYVEVIDPQTHLPIADIELPEGPRF- 101 (352)
T ss_pred EECCCCEEEEEEEccCCCce-e-EC--CCCCEEEEEecccccccc-----CCCCCEEEEEECccCcEEeEEccCCCchh-
Confidence 67888888777766543322 1 12 235678887751 00000 00157899999999999999998544221
Q ss_pred CCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEe
Q 040693 81 LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160 (382)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~ 160 (382)
..+... ....+.+++..+||...+ ....|..+|..+++++=+..
T Consensus 102 ---~~~~~~--~~~~ls~dgk~l~V~n~~-------------------------------p~~~V~VvD~~~~kvv~ei~ 145 (352)
T TIGR02658 102 ---LVGTYP--WMTSLTPDNKTLLFYQFS-------------------------------PSPAVGVVDLEGKAFVRMMD 145 (352)
T ss_pred ---hccCcc--ceEEECCCCCEEEEecCC-------------------------------CCCEEEEEECCCCcEEEEEe
Confidence 112111 236788888899986543 24899999999999999998
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeec-c--CCCC
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSME-A--GPGG 237 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~-~--~~~~ 237 (382)
.+... .++... .....+.+.+..-..+.+|. +|+..-... . +...
T Consensus 146 vp~~~----------------------------~vy~t~---e~~~~~~~~Dg~~~~v~~d~-~g~~~~~~~~vf~~~~~ 193 (352)
T TIGR02658 146 VPDCY----------------------------HIFPTA---NDTFFMHCRDGSLAKVGYGT-KGNPKIKPTEVFHPEDE 193 (352)
T ss_pred CCCCc----------------------------EEEEec---CCccEEEeecCceEEEEecC-CCceEEeeeeeecCCcc
Confidence 86431 111110 11223333333333444443 355331111 1 0000
Q ss_pred CC-CCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCc----EEeee-cCCC---C-CCCC-cceE
Q 040693 238 LG-GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGN----VLWST-ADPS---N-GTAP-GPVT 306 (382)
Q Consensus 238 ~~-g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~----~~W~~-~~~~---~-~~~~-~~~~ 306 (382)
.. ..+.+ ...++..+|++ ..|+|+.+|..+.+ ..|.. .... . .... -++.
T Consensus 194 ~v~~rP~~-~~~dg~~~~vs------------------~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia 254 (352)
T TIGR02658 194 YLINHPAY-SNKSGRLVWPT------------------YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVA 254 (352)
T ss_pred ccccCCce-EcCCCcEEEEe------------------cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEE
Confidence 00 01111 12266777775 33889999954433 23332 2211 0 1111 1243
Q ss_pred E--eCCEEEEeeec--------CCCcEEEEeCCCCcEeEEEecCCceecceEE-eCC-EEEEEeCceeEeecCCccCCCC
Q 040693 307 V--ANGVLFGGSTY--------RQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNG-CIYMGNGYKVTVGFGNKNFTSG 374 (382)
Q Consensus 307 ~--~~~~v~~~~~~--------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g-~lyv~~~~g~~~~~~~~~~~~g 374 (382)
+ +++++|+.... ..+.|..||.++++++-+.+++....+-.+. .+. .||+++..... +.-+|..++
T Consensus 255 ~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~--VsViD~~t~ 332 (352)
T TIGR02658 255 YHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT--LYIFDAETG 332 (352)
T ss_pred EcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc--EEEEECcCC
Confidence 4 46799996421 1258999999999999999987755433333 445 67777753332 234778888
Q ss_pred CeEEEE
Q 040693 375 TSLYAF 380 (382)
Q Consensus 375 ~~l~~~ 380 (382)
+.+-+.
T Consensus 333 k~i~~i 338 (352)
T TIGR02658 333 KELSSV 338 (352)
T ss_pred eEEeee
Confidence 877553
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-05 Score=72.34 Aligned_cols=263 Identities=16% Similarity=0.172 Sum_probs=143.6
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|+++++.+...+....+. .+..+| .+..+|+... .++.|+.+|.++|+++.+.......
T Consensus 16 ~d~~t~~~~~~~~~~~~~~-~l~~~~--dg~~l~~~~~-------------~~~~v~~~d~~~~~~~~~~~~~~~~---- 75 (300)
T TIGR03866 16 IDTATLEVTRTFPVGQRPR-GITLSK--DGKLLYVCAS-------------DSDTIQVIDLATGEVIGTLPSGPDP---- 75 (300)
T ss_pred EECCCCceEEEEECCCCCC-ceEECC--CCCEEEEEEC-------------CCCeEEEEECCCCcEEEeccCCCCc----
Confidence 4677777766655432111 111111 1345666443 1678999999999987654432110
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
....+.+++..+|+.... ++.|..+|..+++.+.+++.
T Consensus 76 ----------~~~~~~~~g~~l~~~~~~--------------------------------~~~l~~~d~~~~~~~~~~~~ 113 (300)
T TIGR03866 76 ----------ELFALHPNGKILYIANED--------------------------------DNLVTVIDIETRKVLAEIPV 113 (300)
T ss_pred ----------cEEEECCCCCEEEEEcCC--------------------------------CCeEEEEECCCCeEEeEeeC
Confidence 124566676777776542 37899999999888776653
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccC-cEEEEEeCCCCCeeeeeccCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKS-GFAWALDRDSGSLIWSMEAGPGGLGG 240 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~-g~l~ald~~tG~~~W~~~~~~~~~~g 240 (382)
... |.-..+.++ +..++++..+ ..+..+|..+++..........
T Consensus 114 ~~~----------------------------~~~~~~~~d---g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---- 158 (300)
T TIGR03866 114 GVE----------------------------PEGMAVSPD---GKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---- 158 (300)
T ss_pred CCC----------------------------cceEEECCC---CCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC----
Confidence 211 111111122 3445555444 3466679888877655432211
Q ss_pred CcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCC-----CCCCcceEE--eCCEEE
Q 040693 241 GAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN-----GTAPGPVTV--ANGVLF 313 (382)
Q Consensus 241 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~-----~~~~~~~~~--~~~~v~ 313 (382)
........++..++++. ..++.+..+|.++++.+-++..... ......+.+ ++..+|
T Consensus 159 ~~~~~~s~dg~~l~~~~----------------~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 159 PRFAEFTADGKELWVSS----------------EIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred ccEEEECCCCCEEEEEc----------------CCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 01111111556666652 2357899999999987544432210 111112223 245667
Q ss_pred EeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 314 GGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 314 ~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
++.. .++.+..+|.++++++-....+... .+..+ .+..||+++..... +.-+|..+++.+..+.
T Consensus 223 ~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~--i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 223 VALG-PANRVAVVDAKTYEVLDYLLVGQRV-WQLAFTPDEKYLLTTNGVSND--VSVIDVAALKVIKSIK 288 (300)
T ss_pred EEcC-CCCeEEEEECCCCcEEEEEEeCCCc-ceEEECCCCCEEEEEcCCCCe--EEEEECCCCcEEEEEE
Confidence 6543 3678999999999987655443322 22333 45567776553232 3446666788876654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.5e-06 Score=79.80 Aligned_cols=135 Identities=15% Similarity=0.051 Sum_probs=91.8
Q ss_pred EcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCC
Q 040693 30 YKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGN 109 (382)
Q Consensus 30 ~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~ 109 (382)
...++||....... ..+.|+.||.++++++=+.+.+... ...+.+++..+|++...
T Consensus 11 ~~~~v~V~d~~~~~---------~~~~v~ViD~~~~~v~g~i~~G~~P---------------~~~~spDg~~lyva~~~ 66 (352)
T TIGR02658 11 DARRVYVLDPGHFA---------ATTQVYTIDGEAGRVLGMTDGGFLP---------------NPVVASDGSFFAHASTV 66 (352)
T ss_pred CCCEEEEECCcccc---------cCceEEEEECCCCEEEEEEEccCCC---------------ceeECCCCCEEEEEecc
Confidence 34667886642111 0378999999999999998875322 12477888999998752
Q ss_pred CCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCC
Q 040693 110 LYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADF 189 (382)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (382)
. .|..-+.-...|..+|++|++++.+...++.. .+..
T Consensus 67 ~-----------------------~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p--------------------~~~~ 103 (352)
T TIGR02658 67 Y-----------------------SRIARGKRTDYVEVIDPQTHLPIADIELPEGP--------------------RFLV 103 (352)
T ss_pred c-----------------------cccccCCCCCEEEEEECccCcEEeEEccCCCc--------------------hhhc
Confidence 1 01111222488999999999999999987541 1112
Q ss_pred CCCceEEEeeeCceeecEEEEE--ccCcEEEEEeCCCCCeeeeeccC
Q 040693 190 GEAPMMLSMYRNKVKHDIVVAV--QKSGFAWALDRDSGSLIWSMEAG 234 (382)
Q Consensus 190 ~~~p~~~~~~~~g~~~~~v~~~--~~~g~l~ald~~tG~~~W~~~~~ 234 (382)
...|..+.+..+| ..+|+. +.+..+..+|.++++++-+.+.+
T Consensus 104 ~~~~~~~~ls~dg---k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 104 GTYPWMTSLTPDN---KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cCccceEEECCCC---CEEEEecCCCCCEEEEEECCCCcEEEEEeCC
Confidence 3456666666666 345544 33788999999999999999864
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.1e-05 Score=71.91 Aligned_cols=184 Identities=14% Similarity=0.176 Sum_probs=110.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|.++++.+...+..... ....+++++..+|+....
T Consensus 10 d~~v~~~d~~t~~~~~~~~~~~~~--------------~~l~~~~dg~~l~~~~~~------------------------ 51 (300)
T TIGR03866 10 DNTISVIDTATLEVTRTFPVGQRP--------------RGITLSKDGKLLYVCASD------------------------ 51 (300)
T ss_pred CCEEEEEECCCCceEEEEECCCCC--------------CceEECCCCCEEEEEECC------------------------
Confidence 889999999999988777642111 135666676677775432
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE-c
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV-Q 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~-~ 212 (382)
++.|+.+|..+|+.+.+.+.... +.......+ +..+++. .
T Consensus 52 --------~~~v~~~d~~~~~~~~~~~~~~~----------------------------~~~~~~~~~---g~~l~~~~~ 92 (300)
T TIGR03866 52 --------SDTIQVIDLATGEVIGTLPSGPD----------------------------PELFALHPN---GKILYIANE 92 (300)
T ss_pred --------CCeEEEEECCCCcEEEeccCCCC----------------------------ccEEEECCC---CCEEEEEcC
Confidence 37899999999988765543211 111222222 2445444 4
Q ss_pred cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
.++.+..+|..+++.+..++... ....... ++..+++... ....++.+|.++++..
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~~~~------~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~ 150 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIPVGV------EPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIV 150 (300)
T ss_pred CCCeEEEEECCCCeEEeEeeCCC------CcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEE
Confidence 57899999999988877765321 1111222 4555555421 1234667899998887
Q ss_pred eeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 291 WSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 291 W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
......... ......-++..+++... .++.++.+|.++++.+-++.
T Consensus 151 ~~~~~~~~~-~~~~~s~dg~~l~~~~~-~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 151 DNVLVDQRP-RFAEFTADGKELWVSSE-IGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred EEEEcCCCc-cEEEECCCCCEEEEEcC-CCCEEEEEEcCcceeeeeee
Confidence 665443311 11111123456666542 47899999999998766554
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.8e-05 Score=66.99 Aligned_cols=208 Identities=16% Similarity=0.180 Sum_probs=120.6
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|..+++.+.+....... . ....+.+++..++.+..
T Consensus 72 ~~~i~i~~~~~~~~~~~~~~~~~~-----------i--~~~~~~~~~~~~~~~~~------------------------- 113 (289)
T cd00200 72 DKTIRLWDLETGECVRTLTGHTSY-----------V--SSVAFSPDGRILSSSSR------------------------- 113 (289)
T ss_pred CCeEEEEEcCcccceEEEeccCCc-----------E--EEEEEcCCCCEEEEecC-------------------------
Confidence 789999999888777766532110 0 12344444334444332
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
++.+..+|..+++.+..+...... ..-.....+ +..++.+..
T Consensus 114 --------~~~i~~~~~~~~~~~~~~~~~~~~---------------------------i~~~~~~~~---~~~l~~~~~ 155 (289)
T cd00200 114 --------DKTIKVWDVETGKCLTTLRGHTDW---------------------------VNSVAFSPD---GTFVASSSQ 155 (289)
T ss_pred --------CCeEEEEECCCcEEEEEeccCCCc---------------------------EEEEEEcCc---CCEEEEEcC
Confidence 388999999989888877632211 111111111 355666666
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+..+|..+++.+..+..... ....... ++..++++ ..++.+..+|.++++.+-
T Consensus 156 ~~~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~-----------------~~~~~i~i~d~~~~~~~~ 213 (289)
T cd00200 156 DGTIKLWDLRTGKCVATLTGHTG-----EVNSVAFSPDGEKLLSS-----------------SSDGTIKLWDLSTGKCLG 213 (289)
T ss_pred CCcEEEEEccccccceeEecCcc-----ccceEEECCCcCEEEEe-----------------cCCCcEEEEECCCCceec
Confidence 89999999998988877763221 1222222 33466665 235789999999988877
Q ss_pred eecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEe-C-CEEEEEeCcee
Q 040693 292 STADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVS-N-GCIYMGNGYKV 362 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~-~-g~lyv~~~~g~ 362 (382)
+...... ....+... ++.+++... .++.|+.+|..+++.+..++............ + ..|++++.+|.
T Consensus 214 ~~~~~~~--~i~~~~~~~~~~~~~~~~-~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~ 284 (289)
T cd00200 214 TLRGHEN--GVNSVAFSPDGYLLASGS-EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGT 284 (289)
T ss_pred chhhcCC--ceEEEEEcCCCcEEEEEc-CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCe
Confidence 6643221 11222232 244444432 48999999999999888877433333334443 3 44554555543
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.6e-05 Score=67.85 Aligned_cols=221 Identities=14% Similarity=0.154 Sum_probs=128.7
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.+..+|..+++........... . ......+++..++++..+
T Consensus 30 ~g~i~i~~~~~~~~~~~~~~~~~~-----------i--~~~~~~~~~~~l~~~~~~------------------------ 72 (289)
T cd00200 30 DGTIKVWDLETGELLRTLKGHTGP-----------V--RDVAASADGTYLASGSSD------------------------ 72 (289)
T ss_pred CcEEEEEEeeCCCcEEEEecCCcc-----------e--eEEEECCCCCEEEEEcCC------------------------
Confidence 789999999988876665432111 0 123444444566665433
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.+..+|..+++.+.++....... .-.....+ +..++.+..
T Consensus 73 ---------~~i~i~~~~~~~~~~~~~~~~~~i---------------------------~~~~~~~~---~~~~~~~~~ 113 (289)
T cd00200 73 ---------KTIRLWDLETGECVRTLTGHTSYV---------------------------SSVAFSPD---GRILSSSSR 113 (289)
T ss_pred ---------CeEEEEEcCcccceEEEeccCCcE---------------------------EEEEEcCC---CCEEEEecC
Confidence 889999999888777766432211 00111111 345666666
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+..+|..+++....+.... ........ ++..++.+ ..++.+..+|.++++...
T Consensus 114 ~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~-----------------~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 114 DKTIKVWDVETGKCLTTLRGHT-----DWVNSVAFSPDGTFVASS-----------------SQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred CCeEEEEECCCcEEEEEeccCC-----CcEEEEEEcCcCCEEEEE-----------------cCCCcEEEEEccccccce
Confidence 8999999999888887776221 11122222 23444443 235789999999998887
Q ss_pred eecCCCCCCCCcceEEe-C-CEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeC-ceeEeecC
Q 040693 292 STADPSNGTAPGPVTVA-N-GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNG-YKVTVGFG 367 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~-~g~~~~~~ 367 (382)
........ ...+... + ..+++++. ++.+..+|..+++.+-++............ .++.++++.+ +|. +.+|
T Consensus 172 ~~~~~~~~--i~~~~~~~~~~~l~~~~~--~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~ 246 (289)
T cd00200 172 TLTGHTGE--VNSVAFSPDGEKLLSSSS--DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVW 246 (289)
T ss_pred eEecCccc--cceEEECCCcCEEEEecC--CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEE
Confidence 77644321 2222232 3 36777664 899999999998888776432222233333 3366666665 444 3444
Q ss_pred CccCCCCCeEEE
Q 040693 368 NKNFTSGTSLYA 379 (382)
Q Consensus 368 ~~~~~~g~~l~~ 379 (382)
.+ .+++.+..
T Consensus 247 ~~--~~~~~~~~ 256 (289)
T cd00200 247 DL--RTGECVQT 256 (289)
T ss_pred Ec--CCceeEEE
Confidence 43 33554443
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-07 Score=59.12 Aligned_cols=40 Identities=40% Similarity=0.552 Sum_probs=28.3
Q ss_pred CceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCcc
Q 040693 7 GKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKT 64 (382)
Q Consensus 7 Gk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~t 64 (382)
||++|+++++ ..+.++|++.+++||+++. +|.|+|||++|
T Consensus 1 G~~~W~~~~~----~~~~~~~~v~~g~vyv~~~--------------dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTG----GPIWSSPAVAGGRVYVGTG--------------DGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-S----S---S--EECTSEEEEE-T--------------TSEEEEEETT-
T ss_pred CceeEEEECC----CCcCcCCEEECCEEEEEcC--------------CCEEEEEeCCC
Confidence 8999999985 3577899999999999996 89999999976
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.4e-05 Score=73.53 Aligned_cols=194 Identities=20% Similarity=0.232 Sum_probs=112.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.+|.+++.+.+.....+ ....+.+++..+|+...+
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~~~h-------------~~~~~s~Dgr~~yv~~rd------------------------ 57 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGGAPH-------------AGLKFSPDGRYLYVANRD------------------------ 57 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-STTEE-------------EEEE-TT-SSEEEEEETT------------------------
T ss_pred CCEEEEEECCCCeEEEEEcCCCCce-------------eEEEecCCCCEEEEEcCC------------------------
Confidence 7899999999999999998742211 124566777789997543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE-c
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV-Q 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~-~ 212 (382)
+.|..+|+.+++++-+.+.... |.=..++.+| ..++++ .
T Consensus 58 ---------g~vsviD~~~~~~v~~i~~G~~----------------------------~~~i~~s~DG---~~~~v~n~ 97 (369)
T PF02239_consen 58 ---------GTVSVIDLATGKVVATIKVGGN----------------------------PRGIAVSPDG---KYVYVANY 97 (369)
T ss_dssp ---------SEEEEEETTSSSEEEEEE-SSE----------------------------EEEEEE--TT---TEEEEEEE
T ss_pred ---------CeEEEEECCcccEEEEEecCCC----------------------------cceEEEcCCC---CEEEEEec
Confidence 8999999999999999987643 2223333344 345544 4
Q ss_pred cCcEEEEEeCCCCCeeeeeccCCCCC--CCCcccce-eeeCCe-EEEEecCccccccccCCCCCCCCCceEEEEECCCCc
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGPGGL--GGGAMWGA-ATDERR-IYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGN 288 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~~~~--~g~~~~~~-~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~ 288 (382)
..+.+..+|.+|.+++-..+...... ......+. ...... .+++. ...+.+..+|.++.+
T Consensus 98 ~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l----------------kd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 98 EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNL----------------KDTGEIWVVDYSDPK 161 (369)
T ss_dssp ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEE----------------TTTTEEEEEETTTSS
T ss_pred CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEE----------------ccCCeEEEEEecccc
Confidence 57889999999999999887542111 11111111 112222 22322 234788899988877
Q ss_pred EEeeecCCCCCCCCcceEEeCC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 289 VLWSTADPSNGTAPGPVTVANG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 289 ~~W~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
.+..........-..-..-.++ +++++.. ....+.++|.++++.+...+.+.
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~-~sn~i~viD~~~~k~v~~i~~g~ 214 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-GSNKIAVIDTKTGKLVALIDTGK 214 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEG-GGTEEEEEETTTTEEEEEEE-SS
T ss_pred ccceeeecccccccccccCcccceeeeccc-ccceeEEEeeccceEEEEeeccc
Confidence 6655443321111111212233 5555543 46789999999999999887653
|
... |
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00013 Score=67.86 Aligned_cols=183 Identities=13% Similarity=0.074 Sum_probs=109.7
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
+.|+++|++||+++-+..-.... ..|.+.. ......++.+..++.++.++.
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~-------------------------~~~~~~~----~~~~~~~~~g~~e~~~~~~~~ 262 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGL-------------------------ELPCISL----NLAGSTLTKGNSEGVACGVNN 262 (399)
T ss_pred ceEEEEecCCCceeEEecccccC-------------------------cCCcccc----ccccceeEeccCCccEEEEcc
Confidence 89999999999999887643320 1111110 012467778888898999999
Q ss_pred CCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCC
Q 040693 223 DSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAP 302 (382)
Q Consensus 223 ~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~ 302 (382)
.+||++-..+...+......... +.-.-++.. . ...-.... +..+|+|..+|.++-+++..-..+.+ .
T Consensus 263 ~sgKVv~~~n~~~~~l~~~~e~~---~esve~~~~-s--s~lpL~A~---G~vdG~i~iyD~a~~~~R~~c~he~~---V 330 (399)
T KOG0296|consen 263 GSGKVVNCNNGTVPELKPSQEEL---DESVESIPS-S--SKLPLAAC---GSVDGTIAIYDLAASTLRHICEHEDG---V 330 (399)
T ss_pred ccceEEEecCCCCccccccchhh---hhhhhhccc-c--cccchhhc---ccccceEEEEecccchhheeccCCCc---e
Confidence 99999988774211110000000 000000000 0 00000001 14568999999998888877665542 3
Q ss_pred cceEEeC-CEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEEeCCEEEEEeCceeEeecCC
Q 040693 303 GPVTVAN-GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASVSNGCIYMGNGYKVTVGFGN 368 (382)
Q Consensus 303 ~~~~~~~-~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~~~g~lyv~~~~g~~~~~~~ 368 (382)
..+...+ .++|.+.. +|.|+.+|+.||..+..+.-.. .++--.+..+.++.|+.++.....+|.
T Consensus 331 ~~l~w~~t~~l~t~c~--~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 331 TKLKWLNTDYLLTACA--NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred EEEEEcCcchheeecc--CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 3444455 67888875 9999999999999999886433 233333346888888877766554443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00024 Score=64.93 Aligned_cols=120 Identities=19% Similarity=0.261 Sum_probs=72.7
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC--CCcEE
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS--NGNVL 290 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~--tG~~~ 290 (382)
|.++.++.. |+...-.+.-. ..-+.++ +++.+|+.. ...+.|+.+|.. +++..
T Consensus 115 g~v~~~~~~-~~~~~~~~~~~------~pNGi~~s~dg~~lyv~d----------------s~~~~i~~~~~~~~~~~~~ 171 (246)
T PF08450_consen 115 GSVYRIDPD-GKVTVVADGLG------FPNGIAFSPDGKTLYVAD----------------SFNGRIWRFDLDADGGELS 171 (246)
T ss_dssp EEEEEEETT-SEEEEEEEEES------SEEEEEEETTSSEEEEEE----------------TTTTEEEEEEEETTTCCEE
T ss_pred cceEEECCC-CeEEEEecCcc------cccceEECCcchheeecc----------------cccceeEEEecccccccee
Confidence 679999988 66443332110 1112222 567888763 345779999985 33121
Q ss_pred ee---ecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEe---CCEEEEEeC
Q 040693 291 WS---TADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVS---NGCIYMGNG 359 (382)
Q Consensus 291 W~---~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~---~g~lyv~~~ 359 (382)
-+ ...+.......-+.++ ++.+|++.. ..+.|+.+|++ |+++-+.+++.....++++. .++|||++.
T Consensus 172 ~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 172 NRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-GGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-TTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred eeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-CCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 11 2222211011224454 588999865 58999999998 99999999986666677773 488999975
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00091 Score=63.01 Aligned_cols=186 Identities=13% Similarity=0.177 Sum_probs=98.5
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCC--CCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEE
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPG--PSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~a 219 (382)
++.|+-||++||+++|+.+....-... .+.....|....+ ...+.+.. =+-++... ..+++|+..-.-..++.
T Consensus 95 d~~~~EiDi~TgevlfeW~a~DH~~~~-~~~~~~~~~~~~g~~~~~~~D~~---HiNsV~~~-~~G~yLiS~R~~~~i~~ 169 (299)
T PF14269_consen 95 DDVFQEIDIETGEVLFEWSASDHVDPN-DSYDSQDPLPGSGGSSSFPWDYF---HINSVDKD-DDGDYLISSRNTSTIYK 169 (299)
T ss_pred cceeEEeccCCCCEEEEEEhhheeccc-ccccccccccCCCcCCCCCCCcc---Eeeeeeec-CCccEEEEecccCEEEE
Confidence 588999999999999999876542110 0000001111100 00111111 11111111 22578888888889999
Q ss_pred EeCCCCCeeeeeccCCC-C-------CCCCccccee--eeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE
Q 040693 220 LDRDSGSLIWSMEAGPG-G-------LGGGAMWGAA--TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV 289 (382)
Q Consensus 220 ld~~tG~~~W~~~~~~~-~-------~~g~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~ 289 (382)
+|+.||+++|...-... . +......... ..+...+....|..... .......+.++.+|+++.+.
T Consensus 170 I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~-----~~~~~s~~~v~~ld~~~~~~ 244 (299)
T PF14269_consen 170 IDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDF-----NGTEPSRGLVLELDPETMTV 244 (299)
T ss_pred EECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCC-----CCCcCCCceEEEEECCCCEE
Confidence 99999999999863310 0 0011111111 01222222222210000 11123457899999998866
Q ss_pred EeeecCC---C---CCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 290 LWSTADP---S---NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 290 ~W~~~~~---~---~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
.+..... . ....+..-...++.++++-. ..+++.=++++ |+++|++..
T Consensus 245 ~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g-~~g~~~E~~~~-G~vv~~~~f 298 (299)
T PF14269_consen 245 TLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWG-NNGRISEFTPD-GEVVWEAQF 298 (299)
T ss_pred EEEEEeecCCCcccccCCCcceECCCCCEEEecC-CCceEEEECCC-CCEEEEEEC
Confidence 6555432 1 11223333456777777653 57889999965 999999864
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.3e-05 Score=67.38 Aligned_cols=144 Identities=22% Similarity=0.284 Sum_probs=102.2
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc-CcEEEEE
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK-SGFAWAL 220 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~-~g~l~al 220 (382)
.+.|..+|++||+++.+.++++.. |...-++. ++.|+.-+. ++..+.+
T Consensus 67 ~S~l~~~d~~tg~~~~~~~l~~~~-----------------------FgEGit~~--------~d~l~qLTWk~~~~f~y 115 (264)
T PF05096_consen 67 QSSLRKVDLETGKVLQSVPLPPRY-----------------------FGEGITIL--------GDKLYQLTWKEGTGFVY 115 (264)
T ss_dssp EEEEEEEETTTSSEEEEEE-TTT-------------------------EEEEEEE--------TTEEEEEESSSSEEEEE
T ss_pred cEEEEEEECCCCcEEEEEECCccc-----------------------cceeEEEE--------CCEEEEEEecCCeEEEE
Confidence 379999999999999999988752 22333444 677777765 5789999
Q ss_pred eCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC-
Q 040693 221 DRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG- 299 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~- 299 (382)
|++|-+++-+++.+. .-|+...++..++++ +.+.+|+-+|+++-++.-++.+....
T Consensus 116 d~~tl~~~~~~~y~~------EGWGLt~dg~~Li~S-----------------DGS~~L~~~dP~~f~~~~~i~V~~~g~ 172 (264)
T PF05096_consen 116 DPNTLKKIGTFPYPG------EGWGLTSDGKRLIMS-----------------DGSSRLYFLDPETFKEVRTIQVTDNGR 172 (264)
T ss_dssp ETTTTEEEEEEE-SS------S--EEEECSSCEEEE------------------SSSEEEEE-TTT-SEEEEEE-EETTE
T ss_pred ccccceEEEEEecCC------cceEEEcCCCEEEEE-----------------CCccceEEECCcccceEEEEEEEECCE
Confidence 999999998887542 568888888999998 56688999999999988887764311
Q ss_pred --CCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 300 --TAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 300 --~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
..-.-+-..+|.||+.-. ....|..||++||+++-.+++.
T Consensus 173 pv~~LNELE~i~G~IyANVW-~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 173 PVSNLNELEYINGKIYANVW-QTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp E---EEEEEEETTEEEEEET-TSSEEEEEETTT-BEEEEEE-H
T ss_pred ECCCcEeEEEEcCEEEEEeC-CCCeEEEEeCCCCeEEEEEEhh
Confidence 111223456899999875 6889999999999999888664
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00019 Score=67.55 Aligned_cols=126 Identities=15% Similarity=0.115 Sum_probs=75.3
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCC-------CCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGP-------GGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTI 275 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~-------~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~ 275 (382)
++..++.+.+|.++.+|....+..|..+..- ..+..+.....+. ..+++|+...+. .++...+.
T Consensus 195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g-------~~gsHKdp 267 (342)
T PF06433_consen 195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQG-------GEGSHKDP 267 (342)
T ss_dssp TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE---------TT-TTS-
T ss_pred CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCC-------CCCCccCC
Confidence 4678889999999999988666554433211 0111011111222 468899865432 22333455
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcceEEeC-CEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGPVTVAN-GVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
+..|+.+|++|+|++-+++++.. ..+-.+.-++ .++|..+. .++.|+.+|+.|||.+-+.+-
T Consensus 268 gteVWv~D~~t~krv~Ri~l~~~-~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 268 GTEVWVYDLKTHKRVARIPLEHP-IDSIAVSQDDKPLLYALSA-GDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEE-ESEEEEESSSS-EEEEEET-TTTEEEEEETTT--EEEEE--
T ss_pred ceEEEEEECCCCeEEEEEeCCCc-cceEEEccCCCcEEEEEcC-CCCeEEEEeCcCCcEEeehhc
Confidence 67799999999999999987652 1222222223 47887663 468899999999999988864
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.3e-06 Score=53.01 Aligned_cols=37 Identities=38% Similarity=0.841 Sum_probs=32.1
Q ss_pred CEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceE
Q 040693 310 GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS 348 (382)
Q Consensus 310 ~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~ 348 (382)
++||+++. +|.|+|||++||+++|+++.+....+.|+
T Consensus 1 ~~v~~~~~--~g~l~AlD~~TG~~~W~~~~~~~~~~~p~ 37 (38)
T PF01011_consen 1 GRVYVGTP--DGYLYALDAKTGKVLWKFQTGPPVDSSPI 37 (38)
T ss_dssp TEEEEETT--TSEEEEEETTTTSEEEEEESSSGGGSCBE
T ss_pred CEEEEeCC--CCEEEEEECCCCCEEEeeeCCCCCccCcC
Confidence 57888874 99999999999999999999887777665
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.8e-06 Score=55.40 Aligned_cols=40 Identities=38% Similarity=0.773 Sum_probs=28.1
Q ss_pred CcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCCC
Q 040693 331 GKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTS 373 (382)
Q Consensus 331 G~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~ 373 (382)
|+++|+++++..+.++|++.+++||+++.+|. +|+||+.|
T Consensus 1 G~~~W~~~~~~~~~~~~~v~~g~vyv~~~dg~---l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVAGGRVYVGTGDGN---LYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS---S--EECTSEEEEE-TTSE---EEEEETT-
T ss_pred CceeEEEECCCCcCcCCEEECCEEEEEcCCCE---EEEEeCCC
Confidence 78999999999899999999999999999988 57788764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00014 Score=70.77 Aligned_cols=249 Identities=14% Similarity=0.150 Sum_probs=131.3
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEE--cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYY--KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
||.+|.+++-+.+.... ........ +..+|+..+ +|.|..+|+.+++++-+.+.+....
T Consensus 21 iD~~t~~~~~~i~~~~~----~h~~~~~s~Dgr~~yv~~r--------------dg~vsviD~~~~~~v~~i~~G~~~~- 81 (369)
T PF02239_consen 21 IDGATNKVVARIPTGGA----PHAGLKFSPDGRYLYVANR--------------DGTVSVIDLATGKVVATIKVGGNPR- 81 (369)
T ss_dssp EETTT-SEEEEEE-STT----EEEEEE-TT-SSEEEEEET--------------TSEEEEEETTSSSEEEEEE-SSEEE-
T ss_pred EECCCCeEEEEEcCCCC----ceeEEEecCCCCEEEEEcC--------------CCeEEEEECCcccEEEEEecCCCcc-
Confidence 67888888887776421 11122222 356888765 8899999999999999998853321
Q ss_pred CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEE
Q 040693 80 KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~ 159 (382)
...+.+++.++|++... .+.+..+|.+|.+++-+.
T Consensus 82 -------------~i~~s~DG~~~~v~n~~--------------------------------~~~v~v~D~~tle~v~~I 116 (369)
T PF02239_consen 82 -------------GIAVSPDGKYVYVANYE--------------------------------PGTVSVIDAETLEPVKTI 116 (369)
T ss_dssp -------------EEEE--TTTEEEEEEEE--------------------------------TTEEEEEETTT--EEEEE
T ss_pred -------------eEEEcCCCCEEEEEecC--------------------------------CCceeEeccccccceeec
Confidence 35677788888887543 389999999999999988
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEee-eCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCC
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMY-RNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGL 238 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~ 238 (382)
+...... +. ..+.+..+. ... ....|+.....+.++.+|..+.+.+.......
T Consensus 117 ~~~~~~~---------------------~~-~~~Rv~aIv~s~~-~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~--- 170 (369)
T PF02239_consen 117 PTGGMPV---------------------DG-PESRVAAIVASPG-RPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV--- 170 (369)
T ss_dssp E--EE-T---------------------TT-S---EEEEEE-SS-SSEEEEEETTTTEEEEEETTTSSCEEEEEEE----
T ss_pred ccccccc---------------------cc-cCCCceeEEecCC-CCEEEEEEccCCeEEEEEeccccccceeeecc---
Confidence 7764310 00 122222221 122 12345555666889999988777665444321
Q ss_pred CCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC---CcceEEeCCEEE
Q 040693 239 GGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA---PGPVTVANGVLF 313 (382)
Q Consensus 239 ~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~---~~~~~~~~~~v~ 313 (382)
+........ ++.++++... .++.|..+|.++++..+..+....+.. ...+-...+.+|
T Consensus 171 -g~~~~D~~~dpdgry~~va~~----------------~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw 233 (369)
T PF02239_consen 171 -GRFPHDGGFDPDGRYFLVAAN----------------GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVW 233 (369)
T ss_dssp --TTEEEEEE-TTSSEEEEEEG----------------GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEE
T ss_pred -cccccccccCcccceeeeccc----------------ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEE
Confidence 111122222 3444555432 246799999999999998876442110 001111123444
Q ss_pred EeeecC--------CCcEEEEeCCCCcEeEEEecCCceec-ceEEeCCEEEEE
Q 040693 314 GGSTYR--------QGPIYAMDVKTGKILWSYDTGATIYG-GASVSNGCIYMG 357 (382)
Q Consensus 314 ~~~~~~--------~g~l~~ld~~tG~ilw~~~~~~~~~~-~p~~~~g~lyv~ 357 (382)
...... ...+..+|..+.|++-+.++.++-.. ..--....||+.
T Consensus 234 ~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd 286 (369)
T PF02239_consen 234 ATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVD 286 (369)
T ss_dssp EEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE
T ss_pred eeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEee
Confidence 443201 22233455566777777777553221 111244566666
|
... |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00087 Score=64.62 Aligned_cols=157 Identities=15% Similarity=0.130 Sum_probs=85.1
Q ss_pred cEEEE-EccCcEEEEEeCCCCC--eeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVVA-VQKSGFAWALDRDSGS--LIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~~-~~~~g~l~ald~~tG~--~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
..|++ .-....|+.++.+..+ +.-......+...|.......-++..+|+... .+++|..+
T Consensus 156 ~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e----------------~s~~v~v~ 219 (345)
T PF10282_consen 156 RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE----------------LSNTVSVF 219 (345)
T ss_dssp SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET----------------TTTEEEEE
T ss_pred CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC----------------CCCcEEEE
Confidence 34444 3344556666665443 43322211111122222222226788888732 35677777
Q ss_pred ECC--CCcEEeeecCCC---CC---CCCcceEEe--CCEEEEeeecCCCcEEEEeC--CCCcEeEEE--ecCCceecceE
Q 040693 283 DAS--NGNVLWSTADPS---NG---TAPGPVTVA--NGVLFGGSTYRQGPIYAMDV--KTGKILWSY--DTGATIYGGAS 348 (382)
Q Consensus 283 d~~--tG~~~W~~~~~~---~~---~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~--~tG~ilw~~--~~~~~~~~~p~ 348 (382)
+.. +|+......... .. .....+.+. +..+|+... ..+.|.+|+. ++|++.... +..+..-....
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~ 298 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-GSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFA 298 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-TTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEE
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-cCCEEEEEEEecCCCceEEEEEEeCCCCCccEEE
Confidence 766 776554433221 10 112233343 568898774 3556666665 678775533 33332223334
Q ss_pred E--eCCEEEEEeCceeEeecCCccCCCCCeEEE
Q 040693 349 V--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 349 ~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~ 379 (382)
+ .+..|||++.....+.+|.+|..+|++...
T Consensus 299 ~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 299 FSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 4 788899999888888899999999987543
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00059 Score=68.22 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=142.9
Q ss_pred EcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCC
Q 040693 30 YKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGN 109 (382)
Q Consensus 30 ~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~ 109 (382)
-+++||-... .|.|.=+|+.+++++-..+.. |+..| ++++.+.++.+.++..+
T Consensus 79 e~~RLFS~g~--------------sg~i~EwDl~~lk~~~~~d~~-----------gg~IW--siai~p~~~~l~Igcdd 131 (691)
T KOG2048|consen 79 EGGRLFSSGL--------------SGSITEWDLHTLKQKYNIDSN-----------GGAIW--SIAINPENTILAIGCDD 131 (691)
T ss_pred cCCeEEeecC--------------CceEEEEecccCceeEEecCC-----------Cccee--EEEeCCccceEEeecCC
Confidence 3677776654 889999999999999888762 66777 47888888888887654
Q ss_pred CCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCC
Q 040693 110 LYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADF 189 (382)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (382)
|.++-++..++++..+..+...
T Consensus 132 ---------------------------------Gvl~~~s~~p~~I~~~r~l~rq------------------------- 153 (691)
T KOG2048|consen 132 ---------------------------------GVLYDFSIGPDKITYKRSLMRQ------------------------- 153 (691)
T ss_pred ---------------------------------ceEEEEecCCceEEEEeecccc-------------------------
Confidence 7888999988998888776644
Q ss_pred CCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC---CCcccceee-eCCeEEEEecCcccccc
Q 040693 190 GEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG---GGAMWGAAT-DERRIYTNIANSQHKNF 265 (382)
Q Consensus 190 ~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~---g~~~~~~~~-~~~~v~~~~~~~~~~~~ 265 (382)
.-.++++..+.. +..|+.|..||.+.+.|..+|..+-..++.-.... ....|...+ .++.+..+
T Consensus 154 --~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sg--------- 221 (691)
T KOG2048|consen 154 --KSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASG--------- 221 (691)
T ss_pred --cceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEe---------
Confidence 123444443331 34588999999999999999998885544322111 123466544 55666655
Q ss_pred ccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 266 NLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 266 ~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
+..|+|.-.|.++|.+.=........ .-.++++ +++||.+.. +++++.+..++.+-.|.....
T Consensus 222 --------DS~G~V~FWd~~~gTLiqS~~~h~ad--Vl~Lav~~~~d~vfsaGv--d~~ii~~~~~~~~~~wv~~~~ 286 (691)
T KOG2048|consen 222 --------DSAGTVTFWDSIFGTLIQSHSCHDAD--VLALAVADNEDRVFSAGV--DPKIIQYSLTTNKSEWVINSR 286 (691)
T ss_pred --------cCCceEEEEcccCcchhhhhhhhhcc--eeEEEEcCCCCeEEEccC--CCceEEEEecCCccceeeecc
Confidence 67799999999999888666654432 2233333 479999885 999999998877666865443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0015 Score=61.11 Aligned_cols=152 Identities=9% Similarity=0.092 Sum_probs=92.4
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+..++.+..||.+.++|++||.++-+..-..... ..+.... ....++.. ...+.+....
T Consensus 202 GKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~---~~~~~~~~~~~~~~~g-----------------~~e~~~~~~~ 261 (399)
T KOG0296|consen 202 GKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLE---LPCISLNLAGSTLTKG-----------------NSEGVACGVN 261 (399)
T ss_pred CceEEEEecCceEEEEecCCCceeEEecccccCc---CCccccccccceeEec-----------------cCCccEEEEc
Confidence 4677888889999999999999998877322100 0001111 22233332 2345566667
Q ss_pred CCCCcEEeeecC--CC---------CCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCC
Q 040693 284 ASNGNVLWSTAD--PS---------NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNG 352 (382)
Q Consensus 284 ~~tG~~~W~~~~--~~---------~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g 352 (382)
..+||++--... +. ....+.+....=.+.-++. -+|.|...|..+-+++-+.+...++..-.-....
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~--vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~ 339 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGS--VDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTD 339 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhccc--ccceEEEEecccchhheeccCCCceEEEEEcCcc
Confidence 777777655542 11 0011111111112333333 4899999999888887777776664433333457
Q ss_pred EEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 353 CIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
.||.+..+|. ++.+|++||.++..|.
T Consensus 340 ~l~t~c~~g~---v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 340 YLLTACANGK---VRQWDARTGQLKFTYT 365 (399)
T ss_pred hheeeccCce---EEeeeccccceEEEEe
Confidence 8888888887 5789999999998874
|
|
| >PF01011 PQQ: PQQ enzyme repeat family | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.7e-06 Score=51.60 Aligned_cols=22 Identities=50% Similarity=0.813 Sum_probs=20.5
Q ss_pred cceEEEEeCccCceeeeeeccC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLP 75 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~ 75 (382)
+|.|+|||++||+++|+++...
T Consensus 9 ~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 9 DGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp TSEEEEEETTTTSEEEEEESSS
T ss_pred CCEEEEEECCCCCEEEeeeCCC
Confidence 9999999999999999999853
|
; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A .... |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0022 Score=64.62 Aligned_cols=147 Identities=18% Similarity=0.317 Sum_probs=75.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
....+++|. +|.++|.......... ..... .++.+++..+
T Consensus 127 ~~~~~~iD~-~G~Vrw~~~~~~~~~~-------------~~~~l-~nG~ll~~~~------------------------- 166 (477)
T PF05935_consen 127 SSYTYLIDN-NGDVRWYLPLDSGSDN-------------SFKQL-PNGNLLIGSG------------------------- 166 (477)
T ss_dssp EEEEEEEET-TS-EEEEE-GGGT--S-------------SEEE--TTS-EEEEEB-------------------------
T ss_pred CceEEEECC-CccEEEEEccCccccc-------------eeeEc-CCCCEEEecC-------------------------
Confidence 678999995 9999999987432210 11222 3345555443
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCc---ccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEE
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYD---VWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVA 210 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~ 210 (382)
..++.+|.. |+++|+++++... .+++. ..++ ++.|+.
T Consensus 167 ---------~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~-----------------~l~n-------------Gn~L~l 206 (477)
T PF05935_consen 167 ---------NRLYEIDLL-GKVIWEYDLPGGYYDFHHDID-----------------ELPN-------------GNLLIL 206 (477)
T ss_dssp ---------TEEEEE-TT---EEEEEE--TTEE-B-S-EE-----------------E-TT-------------S-EEEE
T ss_pred ---------CceEEEcCC-CCEEEeeecCCcccccccccE-----------------ECCC-------------CCEEEE
Confidence 689999975 9999999987632 11000 0111 222222
Q ss_pred Ec-------------cCcEEEEEeCCCCCeeeeeccCCCC------------------CCCCcccceee------eCCeE
Q 040693 211 VQ-------------KSGFAWALDRDSGSLIWSMEAGPGG------------------LGGGAMWGAAT------DERRI 253 (382)
Q Consensus 211 ~~-------------~~g~l~ald~~tG~~~W~~~~~~~~------------------~~g~~~~~~~~------~~~~v 253 (382)
.. ....++.+| .+|++.|..++...- ......|.-.. .++.|
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~i 285 (477)
T PF05935_consen 207 ASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSI 285 (477)
T ss_dssp EEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEE
T ss_pred EeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeE
Confidence 22 134699999 899999998854210 01223333221 25677
Q ss_pred EEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 254 YTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
+++.-+ -+.|+.||.+||+++|....+.
T Consensus 286 ivSsR~----------------~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 286 IVSSRH----------------QSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETT----------------T-EEEEEE-TTS-EEEEES-ST
T ss_pred EEEcCc----------------ceEEEEEECCCCcEEEEeCCCC
Confidence 776432 3579999999999999987654
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0031 Score=59.49 Aligned_cols=272 Identities=13% Similarity=0.062 Sum_probs=148.4
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEE--cCEEEEeccC----ccccccccccccccceEEEEeCccCceeeeeeccC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYY--KGAYYVGTSS----IEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLP 75 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~----~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~ 75 (382)
||.++||++=..+.+ +....++. +..+|+++.- ....+ .-.|..+|.+|-++.+...+.+
T Consensus 22 iD~d~~k~lGmi~~g------~~~~~~~spdgk~~y~a~T~~sR~~rG~R--------tDvv~~~D~~TL~~~~EI~iP~ 87 (342)
T PF06433_consen 22 IDADSGKLLGMIDTG------FLGNVALSPDGKTIYVAETFYSRGTRGER--------TDVVEIWDTQTLSPTGEIEIPP 87 (342)
T ss_dssp EETTTTEEEEEEEEE------SSEEEEE-TTSSEEEEEEEEEEETTEEEE--------EEEEEEEETTTTEEEEEEEETT
T ss_pred EECCCCcEEEEeecc------cCCceeECCCCCEEEEEEEEEeccccccc--------eeEEEEEecCcCcccceEecCC
Confidence 577788876666542 11122223 5667765431 12222 3478999999999999999854
Q ss_pred CCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcE
Q 040693 76 DNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKI 155 (382)
Q Consensus 76 ~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~ 155 (382)
.... ..+... ....+..++..+||---. ....|-.+|.+.+|.
T Consensus 88 k~R~----~~~~~~--~~~~ls~dgk~~~V~N~T-------------------------------Pa~SVtVVDl~~~kv 130 (342)
T PF06433_consen 88 KPRA----QVVPYK--NMFALSADGKFLYVQNFT-------------------------------PATSVTVVDLAAKKV 130 (342)
T ss_dssp S-B------BS--G--GGEEE-TTSSEEEEEEES-------------------------------SSEEEEEEETTTTEE
T ss_pred cchh----eecccc--cceEEccCCcEEEEEccC-------------------------------CCCeEEEEECCCCce
Confidence 3111 111111 134566677788885432 237999999999999
Q ss_pred EEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCC-CCCeeeeeccC
Q 040693 156 VWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRD-SGSLIWSMEAG 234 (382)
Q Consensus 156 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~-tG~~~W~~~~~ 234 (382)
+=+.+.++=. .++. .+ ..-......||.+..+..+ .||.. +....
T Consensus 131 v~ei~~PGC~----------------------------~iyP---~~--~~~F~~lC~DGsl~~v~Ld~~Gk~~-~~~t~ 176 (342)
T PF06433_consen 131 VGEIDTPGCW----------------------------LIYP---SG--NRGFSMLCGDGSLLTVTLDADGKEA-QKSTK 176 (342)
T ss_dssp EEEEEGTSEE----------------------------EEEE---EE--TTEEEEEETTSCEEEEEETSTSSEE-EEEEE
T ss_pred eeeecCCCEE----------------------------EEEe---cC--CCceEEEecCCceEEEEECCCCCEe-Eeecc
Confidence 9888776421 1111 01 1223344445545444444 57776 32211
Q ss_pred CCC-CCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC--------C-CCC-
Q 040693 235 PGG-LGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS--------N-GTA- 301 (382)
Q Consensus 235 ~~~-~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~--------~-~~~- 301 (382)
.-. ..-.....++. .++..|+. +..|.|+.+|.+..+..|..+... . ...
T Consensus 177 ~F~~~~dp~f~~~~~~~~~~~~~F~-----------------Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG 239 (342)
T PF06433_consen 177 VFDPDDDPLFEHPAYSRDGGRLYFV-----------------SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGG 239 (342)
T ss_dssp ESSTTTS-B-S--EEETTTTEEEEE-----------------BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-S
T ss_pred ccCCCCcccccccceECCCCeEEEE-----------------ecCCEEEEEeccCCcccccCcccccCccccccCcCCcc
Confidence 000 00011122332 34455544 567999999998887665543221 0 011
Q ss_pred CcceEE--eCCEEEEeeec--------CCCcEEEEeCCCCcEeEEEecCCceecceEE---eCCEEEEEeC-ceeEeecC
Q 040693 302 PGPVTV--ANGVLFGGSTY--------RQGPIYAMDVKTGKILWSYDTGATIYGGASV---SNGCIYMGNG-YKVTVGFG 367 (382)
Q Consensus 302 ~~~~~~--~~~~v~~~~~~--------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~---~~g~lyv~~~-~g~~~~~~ 367 (382)
.-.+.+ ..+++|+.... ..-.|+++|++++|.+-|.++...+. +..+ ..-.||..+. ++. ++
T Consensus 240 ~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~-Si~Vsqd~~P~L~~~~~~~~~---l~ 315 (342)
T PF06433_consen 240 WQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPID-SIAVSQDDKPLLYALSAGDGT---LD 315 (342)
T ss_dssp SS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEES-EEEEESSSS-EEEEEETTTTE---EE
T ss_pred eeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccc-eEEEccCCCcEEEEEcCCCCe---EE
Confidence 122333 35788886531 12259999999999999999876543 3333 2346776655 333 56
Q ss_pred CccCCCCCeEEE
Q 040693 368 NKNFTSGTSLYA 379 (382)
Q Consensus 368 ~~~~~~g~~l~~ 379 (382)
-+|..||+.+-+
T Consensus 316 v~D~~tGk~~~~ 327 (342)
T PF06433_consen 316 VYDAATGKLVRS 327 (342)
T ss_dssp EEETTT--EEEE
T ss_pred EEeCcCCcEEee
Confidence 789999998754
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0031 Score=63.47 Aligned_cols=280 Identities=16% Similarity=0.242 Sum_probs=120.8
Q ss_pred CCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCc
Q 040693 6 NGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYA 85 (382)
Q Consensus 6 tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~ 85 (382)
+|.++|..+....... .--..-++.++++. ...++.+|. .|+++|.+++....
T Consensus 136 ~G~Vrw~~~~~~~~~~---~~~~l~nG~ll~~~---------------~~~~~e~D~-~G~v~~~~~l~~~~-------- 188 (477)
T PF05935_consen 136 NGDVRWYLPLDSGSDN---SFKQLPNGNLLIGS---------------GNRLYEIDL-LGKVIWEYDLPGGY-------- 188 (477)
T ss_dssp TS-EEEEE-GGGT--S---SEEE-TTS-EEEEE---------------BTEEEEE-T-T--EEEEEE--TTE--------
T ss_pred CccEEEEEccCccccc---eeeEcCCCCEEEec---------------CCceEEEcC-CCCEEEeeecCCcc--------
Confidence 6999999987542111 01234567777766 568999998 89999999984321
Q ss_pred CccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCc
Q 040693 86 GAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYD 165 (382)
Q Consensus 86 g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 165 (382)
..+.......+.+++++++....+.... .........|+-+| .||+++|+.++...-
T Consensus 189 --~~~HHD~~~l~nGn~L~l~~~~~~~~~~--------------------~~~~~~~D~Ivevd-~tG~vv~~wd~~d~l 245 (477)
T PF05935_consen 189 --YDFHHDIDELPNGNLLILASETKYVDED--------------------KDVDTVEDVIVEVD-PTGEVVWEWDFFDHL 245 (477)
T ss_dssp --E-B-S-EEE-TTS-EEEEEEETTEE-TS---------------------EE---S-EEEEE--TTS-EEEEEEGGGTS
T ss_pred --cccccccEECCCCCEEEEEeecccccCC--------------------CCccEecCEEEEEC-CCCCEEEEEehHHhC
Confidence 0011234555666777766521100000 00112247899999 899999999876541
Q ss_pred c-cccccccCCCCCCC-CCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC----
Q 040693 166 V-WFGACNWYLNPNCP-PGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG---- 239 (382)
Q Consensus 166 ~-~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~---- 239 (382)
. ...... ...+... .......++.= +-++.-+...+.+|+..-....++.+|..||++.|..-....-..
T Consensus 246 d~~~~~~~-~~~~~~~~~~~~~~~DW~H---~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~ 321 (477)
T PF05935_consen 246 DPYRDTVL-KPYPYGDISGSGGGRDWLH---INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQD 321 (477)
T ss_dssp -TT--TTG-GT--SSSSS-SSTTSBS-----EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGG
T ss_pred Cccccccc-ccccccccccCCCCCCccc---cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccch
Confidence 0 000000 0000000 00000011111 111111122256666667778999999999999999875421100
Q ss_pred -----------------CCcc--cce----ee-eC---CeEEEEecCcccccccc-CCCCCCCCCce--EEEEECCCC--
Q 040693 240 -----------------GGAM--WGA----AT-DE---RRIYTNIANSQHKNFNL-KPSKNSTIAGG--WVAMDASNG-- 287 (382)
Q Consensus 240 -----------------g~~~--~~~----~~-~~---~~v~~~~~~~~~~~~~~-~~~~~~~~~g~--v~a~d~~tG-- 287 (382)
+... ++. .. ++ .++++-.+ ..+.... .........++ .+.+|.+++
T Consensus 322 ~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg--~~r~~~~~~~~~~~~~~Sr~v~Y~Ide~~~T~ 399 (477)
T PF05935_consen 322 YLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNG--NGRGYGQPAYVSPKDNYSRAVEYRIDENKMTV 399 (477)
T ss_dssp GB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE----TTGGGS--SSCCG-----EEEEEEEETTTTEE
T ss_pred heeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECC--CCCCCCCccccccccccceEEEEEecCCCceE
Confidence 0001 110 11 23 23333222 2222211 00000011223 457888776
Q ss_pred cEEeeecCCC-----CCCCCcceEEeC-CEEEEeee--cC-------CCcEEEEeCCCCcEeEEEecCC
Q 040693 288 NVLWSTADPS-----NGTAPGPVTVAN-GVLFGGST--YR-------QGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 288 ~~~W~~~~~~-----~~~~~~~~~~~~-~~v~~~~~--~~-------~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
+..|++..+. .+..++.-...+ +.+++... +. .+.+.-++..+.++++++.+..
T Consensus 400 ~~vw~y~~~~g~~~yS~~~s~aq~l~n~gn~li~~g~~~~~~~~~~~~~~i~ev~~~~~~v~~e~~~~~ 468 (477)
T PF05935_consen 400 EQVWEYGKPRGNEFYSPIVSSAQYLPNKGNTLITSGMAGLFSNGKPSKGIIIEVDPETKEVVFELTIPS 468 (477)
T ss_dssp EEEEEESGGGGGGG--SS--EEEEETTTTEEEEEEEEETTTSTTSEEEEEEEEEETTT--EEEEEEEEE
T ss_pred EEEEEeCCCCCCCccCCcceeeEEecCCCCEEEEeCcccccccCCCCCceEEEEEcCCCEEEEEEEEec
Confidence 5699998762 233344444556 55444332 10 1257889999999999988754
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0044 Score=56.84 Aligned_cols=207 Identities=14% Similarity=0.218 Sum_probs=128.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.-+-+|.++++.+.++++..+.+ .+|+-++.+.-.+ .+.||++.-- . +|..-.
T Consensus 8 eaeahfi~~~d~~~iY~felvG~~P-----~SGGDTYNAV~~v---Dd~IyFGGWV---------------H--APa~y~ 62 (339)
T PF09910_consen 8 EAEAHFIDRDDSEKIYRFELVGPPP-----TSGGDTYNAVEWV---DDFIYFGGWV---------------H--APAVYE 62 (339)
T ss_pred eeeeEEEecCCceEEEEeeeccCCC-----CCCCccceeeeee---cceEEEeeee---------------c--CCceee
Confidence 6777888889999999999854443 2566666543334 4789997532 1 111221
Q ss_pred CC------CCCCCCcceEEEEECCCC--cEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceee
Q 040693 134 KC------IEPENHSNSLLALDLDTG--KIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKH 205 (382)
Q Consensus 134 ~~------~~~~~~~g~v~ald~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 205 (382)
++ +-+.+-.+.|..+|.+++ +++|+-+......|... -+-++++ .-+
T Consensus 63 gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGE--------------------VSdIlYd-----P~~ 117 (339)
T PF09910_consen 63 GKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGE--------------------VSDILYD-----PYE 117 (339)
T ss_pred eccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCccccccc--------------------hhheeeC-----CCc
Confidence 11 223344678999998888 46899888877777432 1334442 114
Q ss_pred cEEEEEccCc----EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 206 DIVVAVQKSG----FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 206 ~~v~~~~~~g----~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
+.|+.+-.|| -+|.+|+.+|+..+-.+.+. .-+..+. +..+++..+.. ..-..|+|
T Consensus 118 D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps-------~KG~~~~-D~a~F~i~~~~------------~g~~~i~~ 177 (339)
T PF09910_consen 118 DRLLLARADGHANLGVYSLDRRTGKAEKLSSNPS-------LKGTLVH-DYACFGINNFH------------KGVSGIHC 177 (339)
T ss_pred CEEEEEecCCcceeeeEEEcccCCceeeccCCCC-------cCceEee-eeEEEeccccc------------cCCceEEE
Confidence 5666666665 48999999999998877542 1222223 34444442211 22356999
Q ss_pred EECCCCcEEeeec-CCC----C---CCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcE
Q 040693 282 MDASNGNVLWSTA-DPS----N---GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 282 ~d~~tG~~~W~~~-~~~----~---~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
+|+.+||.+-+.- ... . ....+.+....+++|+-- .|.+++.|+-.+++
T Consensus 178 ~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF~---rGGi~vgnP~~~e~ 234 (339)
T PF09910_consen 178 LDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAFV---RGGIFVGNPYNGEE 234 (339)
T ss_pred EEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEEE---eccEEEeCCCCCCc
Confidence 9999998744321 111 0 122455555677888877 79999999998766
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.011 Score=56.48 Aligned_cols=149 Identities=9% Similarity=0.098 Sum_probs=72.8
Q ss_pred cEEEEEc-cCcEEEEEeCCC-CCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 206 DIVVAVQ-KSGFAWALDRDS-GSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 206 ~~v~~~~-~~g~l~ald~~t-G~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
..+++.. .++.+..+|.++ |.+.-.....+ .........+ +++.+|+.. ...+.|..
T Consensus 92 ~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~---~~~~~~~~~~~p~g~~l~v~~----------------~~~~~v~v 152 (330)
T PRK11028 92 RFLFSASYNANCVSVSPLDKDGIPVAPIQIIE---GLEGCHSANIDPDNRTLWVPC----------------LKEDRIRL 152 (330)
T ss_pred CEEEEEEcCCCeEEEEEECCCCCCCCceeecc---CCCcccEeEeCCCCCEEEEee----------------CCCCEEEE
Confidence 4555543 467788887753 43211111100 0001111112 567788763 23577999
Q ss_pred EECCC-CcEE----eeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCC--CCcEeEEEecC---Cc----eec
Q 040693 282 MDASN-GNVL----WSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVK--TGKILWSYDTG---AT----IYG 345 (382)
Q Consensus 282 ~d~~t-G~~~----W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~--tG~ilw~~~~~---~~----~~~ 345 (382)
+|..+ |++. .....+.+ .....+.+ ++.++|+... ..+.|.++|.+ +|+......+. .. .+.
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~g-~~p~~~~~~pdg~~lyv~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 230 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVEG-AGPRHMVFHPNQQYAYCVNE-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWA 230 (330)
T ss_pred EEECCCCcccccCCCceecCCC-CCCceEEECCCCCEEEEEec-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccc
Confidence 99876 4321 11122111 01112233 3458888763 46888888876 45543322221 11 111
Q ss_pred -ceEE--eCCEEEEEeCceeEeecCCccCCCCC
Q 040693 346 -GASV--SNGCIYMGNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 346 -~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~ 375 (382)
...+ .+..||+++.....+.+|.++..+++
T Consensus 231 ~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~ 263 (330)
T PRK11028 231 ADIHITPDGRHLYACDRTASLISVFSVSEDGSV 263 (330)
T ss_pred eeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe
Confidence 1111 45678998766566677777665543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00068 Score=59.94 Aligned_cols=192 Identities=16% Similarity=0.107 Sum_probs=112.3
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCC-------------CCCCCCCCCCCCCC--CceEEEeeeCceeec
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNP-------------NCPPGPSPDADFGE--APMMLSMYRNKVKHD 206 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~--~p~~~~~~~~g~~~~ 206 (382)
+..++.+|..|||++-+++....++.....+..+.- .|......+..+-. .-.+.++ ..++.
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si---~v~~h 156 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSI---DVAEH 156 (307)
T ss_pred CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEE---Eeccc
Confidence 478999999999999888765443221111111110 13222211111000 0001111 13468
Q ss_pred EEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc--eeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 207 IVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG--AATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 207 ~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
.|+.++-||.+..+|...|.+--.+-- .+... ..-+++.+.++ ..++.+..+|.
T Consensus 157 eIvaGS~DGtvRtydiR~G~l~sDy~g-------~pit~vs~s~d~nc~La~-----------------~l~stlrLlDk 212 (307)
T KOG0316|consen 157 EIVAGSVDGTVRTYDIRKGTLSSDYFG-------HPITSVSFSKDGNCSLAS-----------------SLDSTLRLLDK 212 (307)
T ss_pred EEEeeccCCcEEEEEeecceeehhhcC-------CcceeEEecCCCCEEEEe-----------------eccceeeeccc
Confidence 899999999999999998865433321 11111 11266777777 45688999999
Q ss_pred CCCcEEeeecCCCC--CCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee-cceEE--eCCEEEEEeC
Q 040693 285 SNGNVLWSTADPSN--GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY-GGASV--SNGCIYMGNG 359 (382)
Q Consensus 285 ~tG~~~W~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~-~~p~~--~~g~lyv~~~ 359 (382)
.|||++=.+....+ ......+.-.+..|+-++ ++|.+|..|+.+++++-+++.+.... ..... ...++++++.
T Consensus 213 ~tGklL~sYkGhkn~eykldc~l~qsdthV~sgS--EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~ 290 (307)
T KOG0316|consen 213 ETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS--EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG 290 (307)
T ss_pred chhHHHHHhcccccceeeeeeeecccceeEEecc--CCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC
Confidence 99999877765442 111223322345677777 59999999999999999998776442 22222 2356666655
Q ss_pred cee
Q 040693 360 YKV 362 (382)
Q Consensus 360 ~g~ 362 (382)
.+.
T Consensus 291 ~~~ 293 (307)
T KOG0316|consen 291 HGD 293 (307)
T ss_pred Cce
Confidence 433
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0038 Score=63.51 Aligned_cols=149 Identities=16% Similarity=0.177 Sum_probs=100.8
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+..|..+..||.+..+|..+|--.=.+.... .+.........++.++.+ ..+|+|.|+|.
T Consensus 362 gq~iaTG~eDgKVKvWn~~SgfC~vTFteHt---s~Vt~v~f~~~g~~llss-----------------SLDGtVRAwDl 421 (893)
T KOG0291|consen 362 GQLIATGAEDGKVKVWNTQSGFCFVTFTEHT---SGVTAVQFTARGNVLLSS-----------------SLDGTVRAWDL 421 (893)
T ss_pred CcEEEeccCCCcEEEEeccCceEEEEeccCC---CceEEEEEEecCCEEEEe-----------------ecCCeEEeeee
Confidence 3677788888999999988887777766432 111222222355656655 56799999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCce
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYK 361 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g 361 (382)
+.++---++..|. +...+.++++ |.+|++++. +.=.|+..+.+||+++--..-..+-.++... ..+.+.++.+..
T Consensus 422 kRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~-d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWD 499 (893)
T KOG0291|consen 422 KRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQ-DSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWD 499 (893)
T ss_pred cccceeeeecCCC-ceeeeEEEEcCCCCEEEeecc-ceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecccc
Confidence 9998877777776 3556667776 667777774 3346999999999988765432222222222 456677777888
Q ss_pred eEeecCCccCCCCC
Q 040693 362 VTVGFGNKNFTSGT 375 (382)
Q Consensus 362 ~~~~~~~~~~~~g~ 375 (382)
.++.+|.+...+|.
T Consensus 500 kTVRiW~if~s~~~ 513 (893)
T KOG0291|consen 500 KTVRIWDIFSSSGT 513 (893)
T ss_pred ceEEEEEeeccCce
Confidence 88888888777543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0021 Score=58.62 Aligned_cols=164 Identities=21% Similarity=0.252 Sum_probs=106.0
Q ss_pred eeeceEE-EcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCC
Q 040693 23 ITMSGTY-YKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRN 101 (382)
Q Consensus 23 ~~~~p~v-~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 101 (382)
+..-... .++.+|.++.. ++ +..|..+|++||+++.+.++.+..++ . .++.-++
T Consensus 46 FTQGL~~~~~g~LyESTG~--yG---------~S~l~~~d~~tg~~~~~~~l~~~~Fg-------E-------Git~~~d 100 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGL--YG---------QSSLRKVDLETGKVLQSVPLPPRYFG-------E-------GITILGD 100 (264)
T ss_dssp EEEEEEEEETTEEEEEECS--TT---------EEEEEEEETTTSSEEEEEE-TTT--E-------E-------EEEEETT
T ss_pred cCccEEecCCCEEEEeCCC--CC---------cEEEEEEECCCCcEEEEEECCccccc-------e-------eEEEECC
Confidence 3333444 67899987742 22 56899999999999999998544332 1 1222246
Q ss_pred eEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCC
Q 040693 102 HVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPP 181 (382)
Q Consensus 102 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 181 (382)
.+|.-+-. .+..+.+|++|-+++=++++.. ..|....
T Consensus 101 ~l~qLTWk--------------------------------~~~~f~yd~~tl~~~~~~~y~~-EGWGLt~---------- 137 (264)
T PF05096_consen 101 KLYQLTWK--------------------------------EGTGFVYDPNTLKKIGTFPYPG-EGWGLTS---------- 137 (264)
T ss_dssp EEEEEESS--------------------------------SSEEEEEETTTTEEEEEEE-SS-S--EEEE----------
T ss_pred EEEEEEec--------------------------------CCeEEEEccccceEEEEEecCC-cceEEEc----------
Confidence 78887753 3788999999999999998874 3552211
Q ss_pred CCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc---eeeeCCeEEEEec
Q 040693 182 GPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG---AATDERRIYTNIA 258 (382)
Q Consensus 182 ~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~---~~~~~~~v~~~~~ 258 (382)
.+..+++.++...|+-+|++|-++.-+.+.... +.+... ....++.||....
T Consensus 138 ----------------------dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~---g~pv~~LNELE~i~G~IyANVW 192 (264)
T PF05096_consen 138 ----------------------DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDN---GRPVSNLNELEYINGKIYANVW 192 (264)
T ss_dssp ----------------------CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EET---TEE---EEEEEEETTEEEEEET
T ss_pred ----------------------CCCEEEEECCccceEEECCcccceEEEEEEEEC---CEECCCcEeEEEEcCEEEEEeC
Confidence 156788888889999999999888777765321 111111 1236899999864
Q ss_pred CccccccccCCCCCCCCCceEEEEECCCCcEEeeecC
Q 040693 259 NSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTAD 295 (382)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~ 295 (382)
....|+.||++||+++=.+++
T Consensus 193 ----------------~td~I~~Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 193 ----------------QTDRIVRIDPETGKVVGWIDL 213 (264)
T ss_dssp ----------------TSSEEEEEETTT-BEEEEEE-
T ss_pred ----------------CCCeEEEEeCCCCeEEEEEEh
Confidence 457899999999998877654
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=97.81 E-value=4.2e-05 Score=46.61 Aligned_cols=31 Identities=48% Similarity=0.824 Sum_probs=26.5
Q ss_pred EEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeee
Q 040693 28 TYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTF 72 (382)
Q Consensus 28 ~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~ 72 (382)
...++.||+++. ++.|+|+|+++|+++|+++
T Consensus 3 ~~~~~~v~~~~~--------------~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 3 VLSDGTVYVGST--------------DGTLYALDAKTGEILWTYK 33 (33)
T ss_pred EEECCEEEEEcC--------------CCEEEEEEcccCcEEEEcC
Confidence 345679999886 8999999999999999863
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.015 Score=55.40 Aligned_cols=153 Identities=8% Similarity=-0.030 Sum_probs=78.6
Q ss_pred cEEE-EEccCcEEEEEeCCC-CCee----eeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 206 DIVV-AVQKSGFAWALDRDS-GSLI----WSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 206 ~~v~-~~~~~g~l~ald~~t-G~~~----W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
..++ +...++.+..+|.++ |++. ...+... ..+.......-++..+|+... .++.|
T Consensus 138 ~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~--g~~p~~~~~~pdg~~lyv~~~----------------~~~~v 199 (330)
T PRK11028 138 RTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE--GAGPRHMVFHPNQQYAYCVNE----------------LNSSV 199 (330)
T ss_pred CEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC--CCCCceEEECCCCCEEEEEec----------------CCCEE
Confidence 3444 455668899999876 3321 1111111 011111111126678888632 25778
Q ss_pred EEEECC--CCcEEeeecCCCC------CCCCcceEE--eCCEEEEeeecCCCcEEEEeCCC--CcE--eEEEecCC-cee
Q 040693 280 VAMDAS--NGNVLWSTADPSN------GTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKT--GKI--LWSYDTGA-TIY 344 (382)
Q Consensus 280 ~a~d~~--tG~~~W~~~~~~~------~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~t--G~i--lw~~~~~~-~~~ 344 (382)
..+|.. +|+.......... ..+...+.+ ++..+|++.. ..+.|..++.++ ++. +-..+.+. +..
T Consensus 200 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~ 278 (330)
T PRK11028 200 DVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-TASLISVFSVSEDGSVLSFEGHQPTETQPRG 278 (330)
T ss_pred EEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-CCCeEEEEEEeCCCCeEEEeEEEeccccCCc
Confidence 888876 5655443332110 011111222 3457888752 357788887643 322 22223221 111
Q ss_pred cceEEeCCEEEEEeCceeEeecCCccCCCCCeE
Q 040693 345 GGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 345 ~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
......+..||+++.....+.+|.++..+|.+.
T Consensus 279 ~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~ 311 (330)
T PRK11028 279 FNIDHSGKYLIAAGQKSHHISVYEIDGETGLLT 311 (330)
T ss_pred eEECCCCCEEEEEEccCCcEEEEEEcCCCCcEE
Confidence 111125779999987666788899988888753
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.051 Score=52.37 Aligned_cols=234 Identities=15% Similarity=0.186 Sum_probs=126.7
Q ss_pred EEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCC
Q 040693 57 LAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCI 136 (382)
Q Consensus 57 l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (382)
++.||.++|++.-........ .. +...+++++..+|+.....
T Consensus 17 ~~~~d~~~g~l~~~~~~~~~~---------~P---s~l~~~~~~~~LY~~~e~~-------------------------- 58 (345)
T PF10282_consen 17 VFRFDEETGTLTLVQTVAEGE---------NP---SWLAVSPDGRRLYVVNEGS-------------------------- 58 (345)
T ss_dssp EEEEETTTTEEEEEEEEEESS---------SE---CCEEE-TTSSEEEEEETTS--------------------------
T ss_pred EEEEcCCCCCceEeeeecCCC---------CC---ceEEEEeCCCEEEEEEccc--------------------------
Confidence 444566888876555432111 11 2357888889999987630
Q ss_pred CCCCCcceE--EEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccC
Q 040693 137 EPENHSNSL--LALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKS 214 (382)
Q Consensus 137 ~~~~~~g~v--~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~ 214 (382)
...+.| +.++.++|++.-.-+.... ...|+-..+.+++ +-++++.-..
T Consensus 59 ---~~~g~v~~~~i~~~~g~L~~~~~~~~~-------------------------g~~p~~i~~~~~g--~~l~vany~~ 108 (345)
T PF10282_consen 59 ---GDSGGVSSYRIDPDTGTLTLLNSVPSG-------------------------GSSPCHIAVDPDG--RFLYVANYGG 108 (345)
T ss_dssp ---STTTEEEEEEEETTTTEEEEEEEEEES-------------------------SSCEEEEEECTTS--SEEEEEETTT
T ss_pred ---cCCCCEEEEEECCCcceeEEeeeeccC-------------------------CCCcEEEEEecCC--CEEEEEEccC
Confidence 012555 5555555776665544321 1456666555555 3334444457
Q ss_pred cEEEEEeCCC-CCeeeeecc--------CCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 215 GFAWALDRDS-GSLIWSMEA--------GPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 215 g~l~ald~~t-G~~~W~~~~--------~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
|.+..++... |++.-.... .+....+........ +++.+|+... ....|+.++
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl----------------G~D~v~~~~ 172 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL----------------GADRVYVYD 172 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET----------------TTTEEEEEE
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec----------------CCCEEEEEE
Confidence 7787777765 665544221 110011111222222 5678888632 235677777
Q ss_pred CCCCc--EEeee--cCCCCCCCCcc--eEE--eCCEEEEeeecCCCcEEEEeCC--CCcEeEEEecCC---c-----eec
Q 040693 284 ASNGN--VLWST--ADPSNGTAPGP--VTV--ANGVLFGGSTYRQGPIYAMDVK--TGKILWSYDTGA---T-----IYG 345 (382)
Q Consensus 284 ~~tG~--~~W~~--~~~~~~~~~~~--~~~--~~~~v~~~~~~~~g~l~~ld~~--tG~ilw~~~~~~---~-----~~~ 345 (382)
....+ +.-.. ..+. ..+| +.+ ++.++|+... ..+.|.+++.. +|+......++. . ..+
T Consensus 173 ~~~~~~~l~~~~~~~~~~---G~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 248 (345)
T PF10282_consen 173 IDDDTGKLTPVDSIKVPP---GSGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA 248 (345)
T ss_dssp E-TTS-TEEEEEEEECST---TSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred EeCCCceEEEeecccccc---CCCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence 66554 43322 2222 2333 333 3468988874 67788888776 675544332221 1 112
Q ss_pred ceEE--eCCEEEEEeCceeEeecCCccCCCCCeEE
Q 040693 346 GASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLY 378 (382)
Q Consensus 346 ~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~ 378 (382)
...+ .+..||+++.....+.+|.+|..+|++-.
T Consensus 249 ~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~ 283 (345)
T PF10282_consen 249 EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTL 283 (345)
T ss_dssp EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEE
T ss_pred eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEE
Confidence 2233 36789999988778888999988887654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.5e-05 Score=45.01 Aligned_cols=32 Identities=50% Similarity=1.079 Sum_probs=27.3
Q ss_pred eEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 305 VTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 305 ~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
+...++++|+++. +|.|+++|.++|+++|+++
T Consensus 2 ~~~~~~~v~~~~~--~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 2 VVLSDGTVYVGST--DGTLYALDAKTGEILWTYK 33 (33)
T ss_pred cEEECCEEEEEcC--CCEEEEEEcccCcEEEEcC
Confidence 3456779999985 8999999999999999863
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0039 Score=60.00 Aligned_cols=177 Identities=11% Similarity=0.113 Sum_probs=115.3
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceE-EEeeeCceeecEEEEEccCcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM-LSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
-+||.+|.++-..+-+..+... |+- ..+.++| ...|++++..-++|.+|
T Consensus 237 lrifqvDGk~N~~lqS~~l~~f----------------------------Pi~~a~f~p~G--~~~i~~s~rrky~ysyD 286 (514)
T KOG2055|consen 237 LRIFQVDGKVNPKLQSIHLEKF----------------------------PIQKAEFAPNG--HSVIFTSGRRKYLYSYD 286 (514)
T ss_pred EEEEEecCccChhheeeeeccC----------------------------ccceeeecCCC--ceEEEecccceEEEEee
Confidence 5789999888776666655433 221 1122334 44788888888999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
..++|+.--.++......+-..+-..-+++.|.+. ...|.|+.+-.+|++.+-..++.+. ..
T Consensus 287 le~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~-----------------G~~G~I~lLhakT~eli~s~KieG~-v~ 348 (514)
T KOG2055|consen 287 LETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIA-----------------GNNGHIHLLHAKTKELITSFKIEGV-VS 348 (514)
T ss_pred ccccccccccCCCCcccchhheeEecCCCCeEEEc-----------------ccCceEEeehhhhhhhhheeeeccE-Ee
Confidence 99988765554432211111222222255555544 3458899999999999988888763 22
Q ss_pred CcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCCc
Q 040693 302 PGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGNK 369 (382)
Q Consensus 302 ~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~ 369 (382)
.-....++..+++... .|.|+.+|+.+-+.+-++...+++.+.-+. -++.++.+.++-.++-+|..
T Consensus 349 ~~~fsSdsk~l~~~~~--~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~ 416 (514)
T KOG2055|consen 349 DFTFSSDSKELLASGG--TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG 416 (514)
T ss_pred eEEEecCCcEEEEEcC--CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence 2223334567777764 899999999999999988777766544333 56666666666667888873
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.19 Score=55.69 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=80.9
Q ss_pred EEEEEccCcEEEEEeCCCCCeeeeeccCC-CCCCC--------Ccccceee--eCCeEEEEecCccccccccCCCCCCCC
Q 040693 207 IVVAVQKSGFAWALDRDSGSLIWSMEAGP-GGLGG--------GAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTI 275 (382)
Q Consensus 207 ~v~~~~~~g~l~ald~~tG~~~W~~~~~~-~~~~g--------~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~ 275 (382)
+.++...++.++.+|..+|...--...+. ....+ ....+.++ +++.+|+... .
T Consensus 697 LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs----------------~ 760 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS----------------E 760 (1057)
T ss_pred EEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC----------------C
Confidence 34444567889999998886542111000 00000 01122223 4566888732 3
Q ss_pred CceEEEEECCCCcEEeeecCCC---------CC--------C--CCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeE
Q 040693 276 AGGWVAMDASNGNVLWSTADPS---------NG--------T--APGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILW 335 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~---------~~--------~--~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw 335 (382)
.+.|..+|+++|+..+...... +. . ....+.+ .++.+|++.. .++.|..+|++++++..
T Consensus 761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs-~N~rIrviD~~tg~v~t 839 (1057)
T PLN02919 761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS-YNHKIKKLDPATKRVTT 839 (1057)
T ss_pred CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC-CCCEEEEEECCCCeEEE
Confidence 4789999999987655331000 00 0 0112233 3467888775 68899999999888775
Q ss_pred EEecCCc----------eecce---EE-eCCEEEEEeCceeEeecCCccC
Q 040693 336 SYDTGAT----------IYGGA---SV-SNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 336 ~~~~~~~----------~~~~p---~~-~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
....+.. .+..| ++ .+|+|||++...+.+.++.++.
T Consensus 840 iaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 840 LAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 4433211 11122 22 4789999987766655555444
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.11 Score=52.61 Aligned_cols=150 Identities=9% Similarity=0.074 Sum_probs=83.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
.++|++++.|+.+..+|..+++.+-.+..-. .......+ ++..++.+ ..++.|..+
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~-----~~V~sla~spdG~lLatg-----------------s~Dg~IrIw 195 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHS-----DQITSLEWNLDGSLLCTT-----------------SKDKKLNII 195 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEEEEEcCCC-----CceEEEEEECCCCEEEEe-----------------cCCCEEEEE
Confidence 4678888899999999999998765554211 11112211 44555544 456889999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeee--cCCCcEEEEeCCCCc-EeEEEecCC-ceecceEE--eCCEEE
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGST--YRQGPIYAMDVKTGK-ILWSYDTGA-TIYGGASV--SNGCIY 355 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~--~~~g~l~~ld~~tG~-ilw~~~~~~-~~~~~p~~--~~g~ly 355 (382)
|+++|+.+.+............... .++.++.... ..++.|...|..+.+ .+-...... .....|.+ ..+.||
T Consensus 196 D~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~ 275 (493)
T PTZ00421 196 DPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLY 275 (493)
T ss_pred ECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEE
Confidence 9999998877654432111111112 2345554321 136789999988654 333333222 12223333 345566
Q ss_pred EEe-CceeEeecCCccCCCCCeEEE
Q 040693 356 MGN-GYKVTVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 356 v~~-~~g~~~~~~~~~~~~g~~l~~ 379 (382)
+++ +++. +.+|.+ .+++.+..
T Consensus 276 lggkgDg~-Iriwdl--~~~~~~~~ 297 (493)
T PTZ00421 276 IGSKGEGN-IRCFEL--MNERLTFC 297 (493)
T ss_pred EEEeCCCe-EEEEEe--eCCceEEE
Confidence 665 3544 445544 44665543
|
|
| >KOG2103 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.005 Score=63.27 Aligned_cols=200 Identities=20% Similarity=0.259 Sum_probs=115.5
Q ss_pred CCCceeeeeecCcCccceeeeceEEE---cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 5 SNGKLVWKTKLDDHARSFITMSGTYY---KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 5 ~tGk~~W~~~~~~~~~~~~~~~p~v~---~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+-||..|+..+= +....+-... ..+++|.+. +|.|..|++.||+++|+.-+.++..+.
T Consensus 22 q~gkfdwr~~~v----G~~k~~~~~~~t~~~rlivsT~--------------~~vlAsL~~~tGei~WRqvl~~~~~~~- 82 (910)
T KOG2103|consen 22 QAGKFDWRQQLV----GVKKVNFLVYDTKSKRLIVSTE--------------KGVLASLNLRTGEIIWRQVLEPKTSGL- 82 (910)
T ss_pred Hhhhcchhhhcc----cceeEEEEeecCCCceEEEEec--------------cchhheecccCCcEEEEEeccCCCccc-
Confidence 458889988862 2222233333 378888885 899999999999999999886543210
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
| .+.. -++..+ ...+++.|..+|-..|+...
T Consensus 83 ----~------~~~~------~~iS~d---------------------------------g~~lr~wn~~~g~l~~~i~l 113 (910)
T KOG2103|consen 83 ----G------VPLT------NTISVD---------------------------------GRYLRSWNTNNGILDWEIEL 113 (910)
T ss_pred ----C------ccee------EEEccC---------------------------------CcEEEeecCCCceeeeeccc
Confidence 0 0111 123222 26789999999999999987
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGG 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~ 241 (382)
... .+..+.. +..++.+... .....|++.|........ -
T Consensus 114 ~~g--------------------------~~~~~~~-----v~~~i~v~~g-------~~~~~g~l~w~~~~~~~~---~ 152 (910)
T KOG2103|consen 114 ADG--------------------------FKGLLLE-----VNKGIAVLNG-------HTRKFGELKWVESFSISI---E 152 (910)
T ss_pred ccc--------------------------cceeEEE-----EccceEEEcc-------eeccccceeehhhccccc---h
Confidence 643 0111111 1112111111 556679999998875421 1
Q ss_pred cccce--eeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE-eeecCCCCCCCCcceEEeCCEEEEeeec
Q 040693 242 AMWGA--ATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL-WSTADPSNGTAPGPVTVANGVLFGGSTY 318 (382)
Q Consensus 242 ~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~v~~~~~~ 318 (382)
..... ....+.+|+-..- . .....|.+++..+|+.. |+...-.+....-+...+.+.++.++
T Consensus 153 ~~~q~~~~~~t~vvy~~~~l--------~-----~s~~~V~~~~~~~g~v~~~~~~v~~pw~~~~~c~~~k~~vl~~s-- 217 (910)
T KOG2103|consen 153 EDLQDAKIYGTDVVYVLGLL--------K-----RSGSCVQQVFSDDGEVTGPQSTVLGPWFKVLSCSTDKEVVLVCS-- 217 (910)
T ss_pred hHHHHhhhccCcEEEEEEEE--------e-----cCCceEEEEEccCCcEecceeeeecCcccccccccccceEEEcC--
Confidence 11221 1134455543211 0 12355889999999887 77765543322222234567777777
Q ss_pred CCCcEEEEeCC
Q 040693 319 RQGPIYAMDVK 329 (382)
Q Consensus 319 ~~g~l~~ld~~ 329 (382)
+|.+.-+|..
T Consensus 218 -~g~l~s~di~ 227 (910)
T KOG2103|consen 218 -NGTLISLDIS 227 (910)
T ss_pred -CCCeEEEEEE
Confidence 6766666654
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0066 Score=55.37 Aligned_cols=159 Identities=16% Similarity=0.158 Sum_probs=80.9
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCC-CCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG-LGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
++.++++...+ +..+|.++|+..--.+..... .....+-.....++.+|++........ ....+.|+.++
T Consensus 51 ~g~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~--------~~~~g~v~~~~ 121 (246)
T PF08450_consen 51 DGRLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS--------GIDPGSVYRID 121 (246)
T ss_dssp TSEEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT--------CGGSEEEEEEE
T ss_pred CCEEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccc--------cccccceEEEC
Confidence 46666776655 455599999766555542110 000111111224677998855422100 00117899999
Q ss_pred CCCCcEEeeec-CCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCC--CCcEeEEE---ecCCc--eecceEE-eCC
Q 040693 284 ASNGNVLWSTA-DPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVK--TGKILWSY---DTGAT--IYGGASV-SNG 352 (382)
Q Consensus 284 ~~tG~~~W~~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~--tG~ilw~~---~~~~~--~~~~p~~-~~g 352 (382)
+. |+..-... +.. ..-+.+ ++..+|+... ..++|+.++.+ ++++.-+. +.+.. ..-..++ .+|
T Consensus 122 ~~-~~~~~~~~~~~~----pNGi~~s~dg~~lyv~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 122 PD-GKVTVVADGLGF----PNGIAFSPDGKTLYVADS-FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp TT-SEEEEEEEEESS----EEEEEEETTSSEEEEEET-TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred CC-CeEEEEecCccc----ccceEECCcchheeeccc-ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 98 76443332 221 112223 3457777654 57889999885 33222211 22221 2333444 579
Q ss_pred EEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 353 CIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
+||++.-.+. .++.+++. |+.+-.+.
T Consensus 196 ~l~va~~~~~--~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 196 NLWVADWGGG--RIVVFDPD-GKLLREIE 221 (246)
T ss_dssp -EEEEEETTT--EEEEEETT-SCEEEEEE
T ss_pred CEEEEEcCCC--EEEEECCC-ccEEEEEc
Confidence 9999853222 23556666 88876654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.063 Score=50.76 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=42.2
Q ss_pred eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeC---CEEEEEeCce
Q 040693 308 ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSN---GCIYMGNGYK 361 (382)
Q Consensus 308 ~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~---g~lyv~~~~g 361 (382)
.++.+|++.....+.|.+++++ |+.+-++.++....++++..+ +.|||++...
T Consensus 222 adG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 222 ADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 4678886543122399999999 999999999987788888877 9999998754
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.081 Score=52.49 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=54.7
Q ss_pred EEEEEccC--cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 207 IVVAVQKS--GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 207 ~v~~~~~~--g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+++....+ ..++.+|.++|+..- ..... .......|.+ ++..+++.... .....|+.+|+
T Consensus 257 la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~-~~~~~~~~sp--Dg~~i~f~s~~--------------~g~~~iy~~d~ 318 (430)
T PRK00178 257 LAFVLSKDGNPEIYVMDLASRQLSR-VTNHP-AIDTEPFWGK--DGRTLYFTSDR--------------GGKPQIYKVNV 318 (430)
T ss_pred EEEEEccCCCceEEEEECCCCCeEE-cccCC-CCcCCeEECC--CCCEEEEEECC--------------CCCceEEEEEC
Confidence 34444433 379999999887532 21111 0111122222 56666665322 12346899999
Q ss_pred CCCcEEeeecCCCCCCCCcce-EEeCCEEEEeeecCCC--cEEEEeCCCCcEe
Q 040693 285 SNGNVLWSTADPSNGTAPGPV-TVANGVLFGGSTYRQG--PIYAMDVKTGKIL 334 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~g--~l~~ld~~tG~il 334 (382)
.+|+..--... . .....+. .-+++.+++... .++ .|+.+|+++|++.
T Consensus 319 ~~g~~~~lt~~-~-~~~~~~~~Spdg~~i~~~~~-~~~~~~l~~~dl~tg~~~ 368 (430)
T PRK00178 319 NGGRAERVTFV-G-NYNARPRLSADGKTLVMVHR-QDGNFHVAAQDLQRGSVR 368 (430)
T ss_pred CCCCEEEeecC-C-CCccceEECCCCCEEEEEEc-cCCceEEEEEECCCCCEE
Confidence 99875432211 1 1112222 223455555542 122 5899999988753
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.17 Score=56.06 Aligned_cols=137 Identities=15% Similarity=0.097 Sum_probs=75.1
Q ss_pred EEEEEccCcEEEEEeCCCCCeeeeeccC-----------CCCCC-----CCcccceee-eCCeEEEEecCccccccccCC
Q 040693 207 IVVAVQKSGFAWALDRDSGSLIWSMEAG-----------PGGLG-----GGAMWGAAT-DERRIYTNIANSQHKNFNLKP 269 (382)
Q Consensus 207 ~v~~~~~~g~l~ald~~tG~~~W~~~~~-----------~~~~~-----g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~ 269 (382)
+.++...++.+..+|.++|+..+..-.. ..... .....+.++ .++.+|++.
T Consensus 754 LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVAD------------ 821 (1057)
T PLN02919 754 LYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVAD------------ 821 (1057)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEE------------
Confidence 4445566789999999988765432100 00000 001122233 345678763
Q ss_pred CCCCCCCceEEEEECCCCcEEeeecCCCC----------CC-CCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEe--E
Q 040693 270 SKNSTIAGGWVAMDASNGNVLWSTADPSN----------GT-APGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKIL--W 335 (382)
Q Consensus 270 ~~~~~~~g~v~a~d~~tG~~~W~~~~~~~----------~~-~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~il--w 335 (382)
...++|..||++++++......... .. ....+.++ ++.+|++.. .++.|..+|++++++. -
T Consensus 822 ----s~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt-~Nn~Irvid~~~~~~~~~~ 896 (1057)
T PLN02919 822 ----SYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT-NNSLIRYLDLNKGEAAEIL 896 (1057)
T ss_pred ----CCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC-CCCEEEEEECCCCccceeE
Confidence 2357899999999987755432210 00 11122333 567888764 6789999999998763 3
Q ss_pred EEecCCceecceEE-eCCEEEEEeCc
Q 040693 336 SYDTGATIYGGASV-SNGCIYMGNGY 360 (382)
Q Consensus 336 ~~~~~~~~~~~p~~-~~g~lyv~~~~ 360 (382)
..++.+.....+.. .+.+||..++.
T Consensus 897 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1057)
T PLN02919 897 TLELKGVQPPRPKSKSLKRLRRRSSA 922 (1057)
T ss_pred eeccccccCCCCcccchhhhhhcccc
Confidence 33433322222333 45677776443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.014 Score=56.66 Aligned_cols=133 Identities=16% Similarity=0.113 Sum_probs=85.1
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCc-ccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGA-MWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+.+++.+++||.+..+|..+-. -|..+.+- |.+ ......-.+.++++. ..+.|..+|
T Consensus 166 ~hivvtGsYDg~vrl~DtR~~~-~~v~elnh----g~pVe~vl~lpsgs~iasA-----------------gGn~vkVWD 223 (487)
T KOG0310|consen 166 DHIVVTGSYDGKVRLWDTRSLT-SRVVELNH----GCPVESVLALPSGSLIASA-----------------GGNSVKVWD 223 (487)
T ss_pred CeEEEecCCCceEEEEEeccCC-ceeEEecC----CCceeeEEEcCCCCEEEEc-----------------CCCeEEEEE
Confidence 6788999999999999988653 55555432 111 111222334455542 236688999
Q ss_pred CCCCcE-EeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeC
Q 040693 284 ASNGNV-LWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNG 359 (382)
Q Consensus 284 ~~tG~~-~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~ 359 (382)
..+|.. +-+..... ...+.+.+ ++.+++.++- ++.+-+||..+-|++..+..++++.+-.+. .+..++++.+
T Consensus 224 l~~G~qll~~~~~H~--KtVTcL~l~s~~~rLlS~sL--D~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGms 299 (487)
T KOG0310|consen 224 LTTGGQLLTSMFNHN--KTVTCLRLASDSTRLLSGSL--DRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMS 299 (487)
T ss_pred ecCCceehhhhhccc--ceEEEEEeecCCceEeeccc--ccceEEEEccceEEEEeeecccceeeEEecCCCceEEEecc
Confidence 996644 33333111 11223323 3468888774 999999999999999888888877654444 5577888888
Q ss_pred ceeE
Q 040693 360 YKVT 363 (382)
Q Consensus 360 ~g~~ 363 (382)
+|-.
T Consensus 300 nGlv 303 (487)
T KOG0310|consen 300 NGLV 303 (487)
T ss_pred ccee
Confidence 8764
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0027 Score=56.69 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=101.2
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+..|+..+.++.+...|..||+..-+...+.+ ....-...++.++.. ...+.|.-+|+
T Consensus 155 D~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~-----VtSlEvs~dG~ilTi-----------------a~gssV~Fwda 212 (334)
T KOG0278|consen 155 DKCILSSADDKTVRLWDHRTGTEVQSLEFNSP-----VTSLEVSQDGRILTI-----------------AYGSSVKFWDA 212 (334)
T ss_pred CceEEeeccCCceEEEEeccCcEEEEEecCCC-----CcceeeccCCCEEEE-----------------ecCceeEEecc
Confidence 56677778899999999999999988886542 333333344444444 35578999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC--ceecceEEeCCEEEEEeCcee
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA--TIYGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~--~~~~~p~~~~g~lyv~~~~g~ 362 (382)
++-+++=.+++|.. ..+..+..+.-+|++.. .+..+|.+|..||+.+-.++-+. ++..---.-+|.+|.+.+...
T Consensus 213 ksf~~lKs~k~P~n--V~SASL~P~k~~fVaGg-ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDG 289 (334)
T KOG0278|consen 213 KSFGLLKSYKMPCN--VESASLHPKKEFFVAGG-EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDG 289 (334)
T ss_pred ccccceeeccCccc--cccccccCCCceEEecC-cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCc
Confidence 99999999999874 23333344555666553 58999999999999998863322 222212226899999776555
Q ss_pred EeecCCccCCCCCeEE
Q 040693 363 TVGFGNKNFTSGTSLY 378 (382)
Q Consensus 363 ~~~~~~~~~~~g~~l~ 378 (382)
..-++-..+.+-..+|
T Consensus 290 TirlWQt~~~~~~~~~ 305 (334)
T KOG0278|consen 290 TIRLWQTTPGKTYGLW 305 (334)
T ss_pred eEEEEEecCCCchhhc
Confidence 5566666665544344
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.12 Score=52.19 Aligned_cols=150 Identities=14% Similarity=0.149 Sum_probs=84.7
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+|+.+-.+......+ .-.....+ +..++++..|+.+..+|
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V---------------------------~sla~spd---G~lLatgs~Dg~IrIwD 196 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQI---------------------------TSLEWNLD---GSLLCTTSKDKKLNIID 196 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCce---------------------------EEEEEECC---CCEEEEecCCCEEEEEE
Confidence 4889999999998765543221110 00112222 46788889999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee-ecCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS-TADPSNGT 300 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~-~~~~~~~~ 300 (382)
..+|+.+.+.............|.+ +++.++..... ...++.|..+|+++.+.... ........
T Consensus 197 ~rsg~~v~tl~~H~~~~~~~~~w~~--~~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p~~~~~~d~~~~ 261 (493)
T PTZ00421 197 PRDGTIVSSVEAHASAKSQRCLWAK--RKDLIITLGCS-------------KSQQRQIMLWDTRKMASPYSTVDLDQSSA 261 (493)
T ss_pred CCCCcEEEEEecCCCCcceEEEEcC--CCCeEEEEecC-------------CCCCCeEEEEeCCCCCCceeEeccCCCCc
Confidence 9999988776532210001111221 34444443211 02357899999987654333 22222111
Q ss_pred CCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 301 APGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 301 ~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
...+.+ +++++|++.. .++.|..+|..+++++...+
T Consensus 262 -~~~~~~d~d~~~L~lggk-gDg~Iriwdl~~~~~~~~~~ 299 (493)
T PTZ00421 262 -LFIPFFDEDTNLLYIGSK-GEGNIRCFELMNERLTFCSS 299 (493)
T ss_pred -eEEEEEcCCCCEEEEEEe-CCCeEEEEEeeCCceEEEee
Confidence 111122 2456776652 37899999999999876543
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.094 Score=52.17 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=70.0
Q ss_pred EEEEEccC--cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 207 IVVAVQKS--GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 207 ~v~~~~~~--g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+++....+ ..|+.+|.++|+..- ...... ......|.+ ++..+++.... .....|+.+|.
T Consensus 262 l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~-~~~~~~~sp--DG~~l~f~sd~--------------~g~~~iy~~dl 323 (433)
T PRK04922 262 LALTLSRDGNPEIYVMDLGSRQLTR-LTNHFG-IDTEPTWAP--DGKSIYFTSDR--------------GGRPQIYRVAA 323 (433)
T ss_pred EEEEEeCCCCceEEEEECCCCCeEE-CccCCC-CccceEECC--CCCEEEEEECC--------------CCCceEEEEEC
Confidence 34444433 469999999887532 221110 011122221 55666655322 11235899999
Q ss_pred CCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCC--CcEEEEeCCCCcEeEEEecCCceecceEE-eCC-EEEEEeC
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQ--GPIYAMDVKTGKILWSYDTGATIYGGASV-SNG-CIYMGNG 359 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g-~lyv~~~ 359 (382)
.+|+..-...... ....+... ++..+++.+. .+ ..|+.+|+++|++. ....+ ....+|.. .+| .|+..+.
T Consensus 324 ~~g~~~~lt~~g~--~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~-~Lt~~-~~~~~p~~spdG~~i~~~s~ 398 (433)
T PRK04922 324 SGGSAERLTFQGN--YNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVR-TLTPG-SLDESPSFAPNGSMVLYATR 398 (433)
T ss_pred CCCCeEEeecCCC--CccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeE-ECCCC-CCCCCceECCCCCEEEEEEe
Confidence 8887653332111 11222222 3556655542 12 36999999988865 33222 12234444 344 4455544
Q ss_pred ceeEeecCCccCC
Q 040693 360 YKVTVGFGNKNFT 372 (382)
Q Consensus 360 ~g~~~~~~~~~~~ 372 (382)
.+....+|.++..
T Consensus 399 ~~g~~~L~~~~~~ 411 (433)
T PRK04922 399 EGGRGVLAAVSTD 411 (433)
T ss_pred cCCceEEEEEECC
Confidence 4333455656553
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.093 Score=56.47 Aligned_cols=186 Identities=12% Similarity=0.093 Sum_probs=102.7
Q ss_pred ccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeC-CCCeEEEEcCCCCCCCcchhhcccccCCCCCCC
Q 040693 53 FQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDP-IRNHVYIATGNLYSVPLHIRQCQEENNQTTPTS 131 (382)
Q Consensus 53 ~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+++.|..+|..+++.+..+... ...++ +..+.+ +...++.+..
T Consensus 553 ~Dg~v~lWd~~~~~~~~~~~~H-----------~~~V~--~l~~~p~~~~~L~Sgs~----------------------- 596 (793)
T PLN00181 553 FEGVVQVWDVARSQLVTEMKEH-----------EKRVW--SIDYSSADPTLLASGSD----------------------- 596 (793)
T ss_pred CCCeEEEEECCCCeEEEEecCC-----------CCCEE--EEEEcCCCCCEEEEEcC-----------------------
Confidence 4899999999999888776431 11111 233443 2234444433
Q ss_pred CCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE
Q 040693 132 PDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211 (382)
Q Consensus 132 ~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~ 211 (382)
++.|..+|..+++.+-.+..... ..-.....+ .+..+.++
T Consensus 597 ----------Dg~v~iWd~~~~~~~~~~~~~~~----------------------------v~~v~~~~~--~g~~latg 636 (793)
T PLN00181 597 ----------DGSVKLWSINQGVSIGTIKTKAN----------------------------ICCVQFPSE--SGRSLAFG 636 (793)
T ss_pred ----------CCEEEEEECCCCcEEEEEecCCC----------------------------eEEEEEeCC--CCCEEEEE
Confidence 38899999998887655543211 001111111 14678888
Q ss_pred ccCcEEEEEeCCCCCe-eeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCC--
Q 040693 212 QKSGFAWALDRDSGSL-IWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG-- 287 (382)
Q Consensus 212 ~~~g~l~ald~~tG~~-~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG-- 287 (382)
..++.++.+|..+++. +-....- ......... ++..++.+ ..++.|..+|+.++
T Consensus 637 s~dg~I~iwD~~~~~~~~~~~~~h-----~~~V~~v~f~~~~~lvs~-----------------s~D~~ikiWd~~~~~~ 694 (793)
T PLN00181 637 SADHKVYYYDLRNPKLPLCTMIGH-----SKTVSYVRFVDSSTLVSS-----------------STDNTLKLWDLSMSIS 694 (793)
T ss_pred eCCCeEEEEECCCCCccceEecCC-----CCCEEEEEEeCCCEEEEE-----------------ECCCEEEEEeCCCCcc
Confidence 8999999999987763 2222210 011111212 44555544 34577888888754
Q ss_pred ----cEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 288 ----NVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 288 ----~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
+.+.+................++++..++ .++.++.++......+|.+.
T Consensus 695 ~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs--~D~~v~iw~~~~~~~~~s~~ 747 (793)
T PLN00181 695 GINETPLHSFMGHTNVKNFVGLSVSDGYIATGS--ETNEVFVYHKAFPMPVLSYK 747 (793)
T ss_pred ccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEe--CCCEEEEEECCCCCceEEEe
Confidence 33333332221111111112345666666 48999999988887776554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.12 Score=48.61 Aligned_cols=154 Identities=12% Similarity=0.059 Sum_probs=87.3
Q ss_pred EEEE-EccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEE--EE
Q 040693 207 IVVA-VQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA--MD 283 (382)
Q Consensus 207 ~v~~-~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a--~d 283 (382)
.|++ .-+...++.++.+.|++.-..+..-+...|......--.+..+|+.. -.+++|.+ +|
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~----------------EL~stV~v~~y~ 221 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN----------------ELNSTVDVLEYN 221 (346)
T ss_pred EEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe----------------ccCCEEEEEEEc
Confidence 4443 33456788899988987655443322223333333333677788763 23456554 45
Q ss_pred CCCCcEEeeecC---CC---CCCCCcceEE--eCCEEEEeeecCCC--cEEEEeCCCCcEeEEEecC--Cce--ecceEE
Q 040693 284 ASNGNVLWSTAD---PS---NGTAPGPVTV--ANGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTG--ATI--YGGASV 349 (382)
Q Consensus 284 ~~tG~~~W~~~~---~~---~~~~~~~~~~--~~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~--~~~--~~~p~~ 349 (382)
...|+..=.... |. ...+.+.+.+ ++..+|++.- ... .++.+|..+|++.-....+ +.. ......
T Consensus 222 ~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 222 PAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred CCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC
Confidence 444654333222 22 1223444444 3456777652 112 3667788888765443332 221 123334
Q ss_pred eCCEEEEEeCceeEeecCCccCCCCCeE
Q 040693 350 SNGCIYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 350 ~~g~lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
.++-|++++.++..+.+|+.|..||++=
T Consensus 301 ~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 301 SGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 6788888998888899999999999864
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.038 Score=49.36 Aligned_cols=171 Identities=13% Similarity=0.102 Sum_probs=106.2
Q ss_pred cceEEEEeCc------cCceeeeeeccCCCC--CCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccC
Q 040693 54 QGSLAKLDAK------TGRILWQTFMLPDNF--GKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENN 125 (382)
Q Consensus 54 ~g~l~ald~~------tG~~lW~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~ 125 (382)
+|.|+++.-. --|.+|++....... ..|. . ..+.+++..+.|+++.|+
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPe-I-------Nam~ldP~enSi~~AgGD---------------- 135 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPE-I-------NAMWLDPSENSILFAGGD---------------- 135 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCccccCcccCCc-c-------ceeEeccCCCcEEEecCC----------------
Confidence 7888887542 346788876532211 1111 1 246788888888888775
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceee
Q 040693 126 QTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKH 205 (382)
Q Consensus 126 ~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 205 (382)
+.+|++|.++|++.-.++-....+..... . .+.
T Consensus 136 -----------------~~~y~~dlE~G~i~r~~rGHtDYvH~vv~------------------------R------~~~ 168 (325)
T KOG0649|consen 136 -----------------GVIYQVDLEDGRIQREYRGHTDYVHSVVG------------------------R------NAN 168 (325)
T ss_pred -----------------eEEEEEEecCCEEEEEEcCCcceeeeeee------------------------c------ccC
Confidence 89999999999999888776554321110 0 126
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc-----eeeeCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG-----AATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
.+|+.+..||.+...|.+|+|..-.++.-.....-++.++ .+.+.+.++.+ ..-.+.
T Consensus 169 ~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCG------------------gGp~ls 230 (325)
T KOG0649|consen 169 GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCG------------------GGPKLS 230 (325)
T ss_pred cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEec------------------CCCcee
Confidence 7899999999999999999998776665332222222222 23355656654 123355
Q ss_pred EEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEee
Q 040693 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGS 316 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~ 316 (382)
.+.++.-+..-.++++.. .--+.++++.|+++.
T Consensus 231 lwhLrsse~t~vfpipa~---v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPIPAR---VHLVDFVDDCVLIGG 263 (325)
T ss_pred EEeccCCCceEEEecccc---eeEeeeecceEEEec
Confidence 666666666666666552 223445667666655
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.009 Score=52.17 Aligned_cols=166 Identities=16% Similarity=0.140 Sum_probs=108.6
Q ss_pred eeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeE
Q 040693 24 TMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHV 103 (382)
Q Consensus 24 ~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 103 (382)
..-....++.++.++. .++ ...|+..|+.+|+++|+..+.++. + |+ -.++.-++.+
T Consensus 48 TQGL~~~~g~i~esTG--~yg---------~S~ir~~~L~~gq~~~s~~l~~~~------~-----Fg--EGit~~gd~~ 103 (262)
T COG3823 48 TQGLEYLDGHILESTG--LYG---------FSKIRVSDLTTGQEIFSEKLAPDT------V-----FG--EGITKLGDYF 103 (262)
T ss_pred hcceeeeCCEEEEecc--ccc---------cceeEEEeccCceEEEEeecCCcc------c-----cc--cceeeccceE
Confidence 3345566777777664 232 458999999999999999985321 1 11 1122234677
Q ss_pred EEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCC
Q 040693 104 YIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGP 183 (382)
Q Consensus 104 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (382)
|.-+-. .+--+.+|++|=+.+=++++.+. .|...
T Consensus 104 y~LTw~--------------------------------egvaf~~d~~t~~~lg~~~y~Ge-GWgLt------------- 137 (262)
T COG3823 104 YQLTWK--------------------------------EGVAFKYDADTLEELGRFSYEGE-GWGLT------------- 137 (262)
T ss_pred EEEEec--------------------------------cceeEEEChHHhhhhcccccCCc-ceeee-------------
Confidence 777654 25668889999898888888765 34211
Q ss_pred CCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc---eeeeCCeEEEEecCc
Q 040693 184 SPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG---AATDERRIYTNIANS 260 (382)
Q Consensus 184 ~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~---~~~~~~~v~~~~~~~ 260 (382)
.+ +..++++++..+++-.|++|=+.+-+...... |.+... ....++.+|....
T Consensus 138 ----------------~d---~~~LimsdGsatL~frdP~tfa~~~~v~VT~~---g~pv~~LNELE~VdG~lyANVw-- 193 (262)
T COG3823 138 ----------------SD---DKNLIMSDGSATLQFRDPKTFAELDTVQVTDD---GVPVSKLNELEWVDGELYANVW-- 193 (262)
T ss_pred ----------------cC---CcceEeeCCceEEEecCHHHhhhcceEEEEEC---CeecccccceeeeccEEEEeee--
Confidence 11 34477788888999999998777766664321 111111 2236889998764
Q ss_pred cccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 261 QHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 261 ~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
+..+|..||+.+|+++=-++...
T Consensus 194 --------------~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 194 --------------QTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred --------------eecceEEEcCCCCcEEEEEEccC
Confidence 45679999999999876666543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.057 Score=55.83 Aligned_cols=266 Identities=12% Similarity=0.108 Sum_probs=146.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
....+.+|.++-.++-.-+..++. -.++..+++.+|++.++....-...+.... . ..+.. .
T Consensus 55 gksfqvYd~~kl~ll~vs~~lp~~---------------I~alas~~~~vy~A~g~~i~~~~rgk~i~~--~-~~~~~-a 115 (910)
T KOG1539|consen 55 GKSFQVYDVNKLNLLFVSKPLPDK---------------ITALASDKDYVYVASGNKIYAYARGKHIRH--T-TLLHG-A 115 (910)
T ss_pred CceEEEEeccceEEEEecCCCCCc---------------eEEEEecCceEEEecCcEEEEEEccceEEE--E-ecccc-c
Confidence 556788888877777665332221 134556677888888762211111100000 0 00000 0
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
..-.....+..+.|+|.+.+=-+|.........+ . .. +.+.....- +..+.-+..-=+.|+.+..
T Consensus 116 ~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~--l----~~--------~~~~~~~~~-Ital~HP~TYLNKIvvGs~ 180 (910)
T KOG1539|consen 116 KVHLLLPFGEHLIAVDISNILFVWKTSSIQEELY--L----QS--------TFLKVEGDF-ITALLHPSTYLNKIVVGSS 180 (910)
T ss_pred eEEEEeeecceEEEEEccCcEEEEEecccccccc--c----cc--------eeeeccCCc-eeeEecchhheeeEEEeec
Confidence 0011122357889999988888998876422110 0 00 000000000 0000000111367888999
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
.|.+..++..|||++.+++.-... .-.....|+ -+.|-++ ...|+|+.++++.+|++-++
T Consensus 181 ~G~lql~Nvrt~K~v~~f~~~~s~-IT~ieqsPa--LDVVaiG-----------------~~~G~ViifNlK~dkil~sF 240 (910)
T KOG1539|consen 181 QGRLQLWNVRTGKVVYTFQEFFSR-ITAIEQSPA--LDVVAIG-----------------LENGTVIIFNLKFDKILMSF 240 (910)
T ss_pred CCcEEEEEeccCcEEEEecccccc-eeEeccCCc--ceEEEEe-----------------ccCceEEEEEcccCcEEEEE
Confidence 999999999999999998853210 000112222 2455555 55699999999999999999
Q ss_pred cCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC--ceecceEEeCCEEEEEeCceeEeecCCccC
Q 040693 294 ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA--TIYGGASVSNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~--~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
..+-+....-..-.+|..+.+... ..|.+...|++..+..|.....+ +........+..+.++.+..+..+.|-||+
T Consensus 241 k~d~g~VtslSFrtDG~p~las~~-~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~ 319 (910)
T KOG1539|consen 241 KQDWGRVTSLSFRTDGNPLLASGR-SNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDS 319 (910)
T ss_pred EccccceeEEEeccCCCeeEEecc-CCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeC
Confidence 886333333343345555555442 46899999999999999876332 222222335556666666556566666664
Q ss_pred CCC
Q 040693 372 TSG 374 (382)
Q Consensus 372 ~~g 374 (382)
.-|
T Consensus 320 ~dg 322 (910)
T KOG1539|consen 320 GDG 322 (910)
T ss_pred CCC
Confidence 444
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.23 Score=51.18 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=83.0
Q ss_pred EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccc-cC------CCCCCCCCceEEEEECCCCc
Q 040693 216 FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFN-LK------PSKNSTIAGGWVAMDASNGN 288 (382)
Q Consensus 216 ~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~-~~------~~~~~~~~g~v~a~d~~tG~ 288 (382)
.+.++|+.+. .|+.-.+-+ ......+.++-++.||+..+......+. .. ..........+.++|+++.
T Consensus 368 sve~Ydp~~~--~W~~~~~mp--~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td- 442 (557)
T PHA02713 368 TIECYTMGDD--KWKMLPDMP--IALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN- 442 (557)
T ss_pred eEEEEECCCC--eEEECCCCC--cccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-
Confidence 4888999864 688744321 1122233445688999875432111000 00 0000011356999999886
Q ss_pred EEeeecC--CCCCCCCcceEEeCCEEEEeeecC-----CCcEEEEeCCCCcEeEEEe--cCCc-eecceEEeCCEEEEEe
Q 040693 289 VLWSTAD--PSNGTAPGPVTVANGVLFGGSTYR-----QGPIYAMDVKTGKILWSYD--TGAT-IYGGASVSNGCIYMGN 358 (382)
Q Consensus 289 ~~W~~~~--~~~~~~~~~~~~~~~~v~~~~~~~-----~g~l~~ld~~tG~ilw~~~--~~~~-~~~~p~~~~g~lyv~~ 358 (382)
.|+.-. +... ....+++-++.+|+..... ...+.++|+.+ .-.|+.- ++.. ...+.++.+|+||+..
T Consensus 443 -~W~~v~~m~~~r-~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~-~~~W~~~~~m~~~r~~~~~~~~~~~iyv~G 519 (557)
T PHA02713 443 -IWETLPNFWTGT-IRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT-YNGWELITTTESRLSALHTILHDNTIMMLH 519 (557)
T ss_pred -eEeecCCCCccc-ccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC-CCCeeEccccCcccccceeEEECCEEEEEe
Confidence 587533 2222 2334455678888865311 12367899986 1248752 2222 3456777899999987
Q ss_pred CceeEeecCCccCCCCC
Q 040693 359 GYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 359 ~~g~~~~~~~~~~~~g~ 375 (382)
++.....+-.+|+.|.+
T Consensus 520 g~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 520 CYESYMLQDTFNVYTYE 536 (557)
T ss_pred eecceeehhhcCccccc
Confidence 75443344556665543
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0074 Score=56.94 Aligned_cols=233 Identities=16% Similarity=0.197 Sum_probs=129.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
|.++..+|+.|-.++-+.. |+..|..+....+++..|.-+.-
T Consensus 136 D~TvR~WD~~TeTp~~t~K-------------gH~~WVlcvawsPDgk~iASG~~------------------------- 177 (480)
T KOG0271|consen 136 DTTVRLWDLDTETPLFTCK-------------GHKNWVLCVAWSPDGKKIASGSK------------------------- 177 (480)
T ss_pred CceEEeeccCCCCcceeec-------------CCccEEEEEEECCCcchhhcccc-------------------------
Confidence 5567777777766665544 44556556677777666655443
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+|.|...|+++|+++=+.- .++..|+.+-. =.|.=.. .+ ...+..+++
T Consensus 178 --------dg~I~lwdpktg~~~g~~l-~gH~K~It~La------------------wep~hl~---p~--~r~las~sk 225 (480)
T KOG0271|consen 178 --------DGSIRLWDPKTGQQIGRAL-RGHKKWITALA------------------WEPLHLV---PP--CRRLASSSK 225 (480)
T ss_pred --------CCeEEEecCCCCCcccccc-cCcccceeEEe------------------ecccccC---CC--ccceecccC
Confidence 4899999999998875432 22223322111 1111110 00 225556778
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
||.+...|..-|+.+-...--.. ......|+ .++++|.+ .++.+|..++...|+..-+.
T Consensus 226 Dg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwG---G~gliySg-----------------S~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 226 DGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWG---GEGLIYSG-----------------SQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred CCCEEEEEccCceEEEEeccCcc-ceEEEEEc---CCceEEec-----------------CCCceEEEEEccchhHHHhh
Confidence 88899899887777666542110 01111222 46888887 45577777777776543222
Q ss_pred cCCCCCCC-----------Cc----------c---------------eEEeCCEEEEeeecCCCcEEEEeCC-CCcEeEE
Q 040693 294 ADPSNGTA-----------PG----------P---------------VTVANGVLFGGSTYRQGPIYAMDVK-TGKILWS 336 (382)
Q Consensus 294 ~~~~~~~~-----------~~----------~---------------~~~~~~~v~~~~~~~~g~l~~ld~~-tG~ilw~ 336 (382)
....-... .+ + .-..+.+++-++ ++..++..++. +-+++-|
T Consensus 285 kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tlflW~p~~~kkpi~r 362 (480)
T KOG0271|consen 285 KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTLFLWNPFKSKKPITR 362 (480)
T ss_pred cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceEEEecccccccchhh
Confidence 21110000 00 0 001123566666 47888888875 3445555
Q ss_pred EecCCceecceEEe-CCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 337 YDTGATIYGGASVS-NGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 337 ~~~~~~~~~~p~~~-~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
+.-......+..+. |++..++.+...-++++... +|+.|-+||
T Consensus 363 mtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~--tGk~lasfR 406 (480)
T KOG0271|consen 363 MTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGR--TGKFLASFR 406 (480)
T ss_pred hhchhhheeeEEECCCccEEEEeecccceeeeeCC--Ccchhhhhh
Confidence 54333444555554 45555555677777887654 488887775
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.023 Score=51.62 Aligned_cols=180 Identities=14% Similarity=0.083 Sum_probs=112.2
Q ss_pred CCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEE
Q 040693 140 NHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219 (382)
Q Consensus 140 ~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~a 219 (382)
++++.+...|+.+|+..=++-....+.... .++ ..+-+|+.++.|-.+-.
T Consensus 82 swD~~lrlWDl~~g~~t~~f~GH~~dVlsv---------------------------a~s---~dn~qivSGSrDkTikl 131 (315)
T KOG0279|consen 82 SWDGTLRLWDLATGESTRRFVGHTKDVLSV---------------------------AFS---TDNRQIVSGSRDKTIKL 131 (315)
T ss_pred cccceEEEEEecCCcEEEEEEecCCceEEE---------------------------Eec---CCCceeecCCCcceeee
Confidence 356999999999998877776655532211 111 11467888888888888
Q ss_pred EeCCCCCeeeeeccCC-CCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCC
Q 040693 220 LDRDSGSLIWSMEAGP-GGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN 298 (382)
Q Consensus 220 ld~~tG~~~W~~~~~~-~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~ 298 (382)
+|.. |....+..... ........+.|--+ +.++++. .-+..|...|+.+-+.+-.+.....
T Consensus 132 wnt~-g~ck~t~~~~~~~~WVscvrfsP~~~-~p~Ivs~----------------s~DktvKvWnl~~~~l~~~~~gh~~ 193 (315)
T KOG0279|consen 132 WNTL-GVCKYTIHEDSHREWVSCVRFSPNES-NPIIVSA----------------SWDKTVKVWNLRNCQLRTTFIGHSG 193 (315)
T ss_pred eeec-ccEEEEEecCCCcCcEEEEEEcCCCC-CcEEEEc----------------cCCceEEEEccCCcchhhccccccc
Confidence 8877 44444443221 22222223333212 3333332 2357899999998888877665543
Q ss_pred CCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccC
Q 040693 299 GTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 299 ~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
. ...+.+ .+|-+.+. .+.+|.++..|++.||-+..++.. ....+.++..++..+....+.-++++.++.
T Consensus 194 ~--v~t~~vSpDGslcas-Ggkdg~~~LwdL~~~k~lysl~a~-~~v~sl~fspnrywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 194 Y--VNTVTVSPDGSLCAS-GGKDGEAMLWDLNEGKNLYSLEAF-DIVNSLCFSPNRYWLCAATATSIKIWDLES 263 (315)
T ss_pred c--EEEEEECCCCCEEec-CCCCceEEEEEccCCceeEeccCC-CeEeeEEecCCceeEeeccCCceEEEeccc
Confidence 2 222323 23433332 336899999999999988877653 356677888888888877777677777765
|
|
| >PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST) | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.019 Score=54.19 Aligned_cols=68 Identities=16% Similarity=0.293 Sum_probs=42.0
Q ss_pred CcceEEEEECCCCcEEEEEecC-CCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEE
Q 040693 141 HSNSLLALDLDTGKIVWYKQLG-GYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219 (382)
Q Consensus 141 ~~g~v~ald~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~a 219 (382)
..+.++.||+++.+..+..+.. ..... + + .-.++...|. +++.++.=+..+.+..
T Consensus 230 s~~~v~~ld~~~~~~~~~~~~~~~~~~~-~------s----------~~~G~~Q~L~-------nGn~li~~g~~g~~~E 285 (299)
T PF14269_consen 230 SRGLVLELDPETMTVTLVREYSDHPDGF-Y------S----------PSQGSAQRLP-------NGNVLIGWGNNGRISE 285 (299)
T ss_pred CCceEEEEECCCCEEEEEEEeecCCCcc-c------c----------cCCCcceECC-------CCCEEEecCCCceEEE
Confidence 3589999999977777666654 22110 0 0 0011222222 2456666667789999
Q ss_pred EeCCCCCeeeeecc
Q 040693 220 LDRDSGSLIWSMEA 233 (382)
Q Consensus 220 ld~~tG~~~W~~~~ 233 (382)
++++ |+++|++..
T Consensus 286 ~~~~-G~vv~~~~f 298 (299)
T PF14269_consen 286 FTPD-GEVVWEAQF 298 (299)
T ss_pred ECCC-CCEEEEEEC
Confidence 9976 999999863
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.17 Score=50.36 Aligned_cols=147 Identities=13% Similarity=0.091 Sum_probs=68.4
Q ss_pred cEEEEEccC--cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKS--GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~--g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+++....+ ..++.+|.++|+..- ...... ......|.+ ++..|++.... .....|+.+|
T Consensus 259 ~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~-~~~~~~~sp--DG~~i~f~s~~--------------~g~~~Iy~~d 320 (435)
T PRK05137 259 KVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPA-IDTSPSYSP--DGSQIVFESDR--------------SGSPQLYVMN 320 (435)
T ss_pred EEEEEEecCCCceEEEEECCCCceEE-ccCCCC-ccCceeEcC--CCCEEEEEECC--------------CCCCeEEEEE
Confidence 344444433 469999999886532 221110 111122222 56656554322 1124689999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeec-CCCcEEEEeCCCCcEeEEEecCCceecceEEe--CCEEEEEeC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTY-RQGPIYAMDVKTGKILWSYDTGATIYGGASVS--NGCIYMGNG 359 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~--~g~lyv~~~ 359 (382)
+.+++..--..... . ...+... ++..+++.... ....|+.+|+++++.. ....+ ....+|... +..|+..+.
T Consensus 321 ~~g~~~~~lt~~~~-~-~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~~-~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 321 ADGSNPRRISFGGG-R-YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTSG-FLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CCCCCeEEeecCCC-c-ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-eccCC-CCCCCCeECCCCCEEEEEEc
Confidence 88876654333221 1 1222222 34555554421 1236889998765532 22222 223455543 344544443
Q ss_pred ceeE---eecCCccCCCC
Q 040693 360 YKVT---VGFGNKNFTSG 374 (382)
Q Consensus 360 ~g~~---~~~~~~~~~~g 374 (382)
.+.. ..+|.++...+
T Consensus 397 ~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 397 TPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred cCCCCCcceEEEEECCCC
Confidence 2221 23555555443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.11 Score=53.37 Aligned_cols=103 Identities=12% Similarity=0.100 Sum_probs=58.2
Q ss_pred EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee--
Q 040693 216 FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST-- 293 (382)
Q Consensus 216 ~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~-- 293 (382)
.+.++|+.+. .|+.-.+-. ......+.++-++.||+..+..+. ......+.++|+.+ ...|+.
T Consensus 433 ~ve~YDP~td--~W~~v~~m~--~~r~~~~~~~~~~~IYv~GG~~~~----------~~~~~~ve~Ydp~~-~~~W~~~~ 497 (557)
T PHA02713 433 KVIRYDTVNN--IWETLPNFW--TGTIRPGVVSHKDDIYVVCDIKDE----------KNVKTCIFRYNTNT-YNGWELIT 497 (557)
T ss_pred eEEEECCCCC--eEeecCCCC--cccccCcEEEECCEEEEEeCCCCC----------CccceeEEEecCCC-CCCeeEcc
Confidence 4788998865 687654321 122333455578899987432110 01123478999987 124884
Q ss_pred cCCCCCCCCcceEEeCCEEEEeeecCCC--cEEEEeCCCCcEeEEE
Q 040693 294 ADPSNGTAPGPVTVANGVLFGGSTYRQG--PIYAMDVKTGKILWSY 337 (382)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~ 337 (382)
+++.... ...+++-++.||+... .++ .+.++|+.|.+ |+.
T Consensus 498 ~m~~~r~-~~~~~~~~~~iyv~Gg-~~~~~~~e~yd~~~~~--W~~ 539 (557)
T PHA02713 498 TTESRLS-ALHTILHDNTIMMLHC-YESYMLQDTFNVYTYE--WNH 539 (557)
T ss_pred ccCcccc-cceeEEECCEEEEEee-ecceeehhhcCccccc--ccc
Confidence 3444333 3344455777777643 234 57778877554 654
|
|
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.013 Score=51.27 Aligned_cols=145 Identities=17% Similarity=0.225 Sum_probs=101.7
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc-CcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK-SGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~-~g~l~ald 221 (382)
..|...|+.+|+++|+.++.+...+ ....+.. ++.++.-+. ++.-+.+|
T Consensus 68 S~ir~~~L~~gq~~~s~~l~~~~~F----------------------gEGit~~--------gd~~y~LTw~egvaf~~d 117 (262)
T COG3823 68 SKIRVSDLTTGQEIFSEKLAPDTVF----------------------GEGITKL--------GDYFYQLTWKEGVAFKYD 117 (262)
T ss_pred ceeEEEeccCceEEEEeecCCcccc----------------------ccceeec--------cceEEEEEeccceeEEEC
Confidence 7899999999999999998843211 1122222 567777664 57889999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCC---
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN--- 298 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~--- 298 (382)
++|-+.+=+++.+. .-|+...|+..+..+ +....++-.|++|-+..=++.+-..
T Consensus 118 ~~t~~~lg~~~y~G------eGWgLt~d~~~Lims-----------------dGsatL~frdP~tfa~~~~v~VT~~g~p 174 (262)
T COG3823 118 ADTLEELGRFSYEG------EGWGLTSDDKNLIMS-----------------DGSATLQFRDPKTFAELDTVQVTDDGVP 174 (262)
T ss_pred hHHhhhhcccccCC------cceeeecCCcceEee-----------------CCceEEEecCHHHhhhcceEEEEECCee
Confidence 99988887777542 558877788777776 4457788889998877766654321
Q ss_pred CCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 299 GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 299 ~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
...-.-+-.-+|.+|+.-. +...|..||+++|+++--.++++
T Consensus 175 v~~LNELE~VdG~lyANVw-~t~~I~rI~p~sGrV~~widlS~ 216 (262)
T COG3823 175 VSKLNELEWVDGELYANVW-QTTRIARIDPDSGRVVAWIDLSG 216 (262)
T ss_pred cccccceeeeccEEEEeee-eecceEEEcCCCCcEEEEEEccC
Confidence 1111223334678888764 67899999999999988777764
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.23 Score=49.40 Aligned_cols=143 Identities=14% Similarity=0.110 Sum_probs=67.0
Q ss_pred cEEEEEccCc--EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSG--FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g--~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+++....++ .|+.+|.++|+..--..... ......|.+ ++..|++.... ...-.|+.+|
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~--~~~~~~wSP--DG~~I~f~s~~--------------~g~~~Iy~~d 317 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRS--NNTEPTWFP--DSQNLAYTSDQ--------------AGRPQVYKVN 317 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEEccCCCC--CcCceEECC--CCCEEEEEeCC--------------CCCceEEEEE
Confidence 3444444333 69999999887542222110 111122222 56656554322 1123688999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeee-cCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCC-EEEEEeC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGST-YRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNG-CIYMGNG 359 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g-~lyv~~~ 359 (382)
+.+|+..--..... . ...+... ++..++.... .....|+.+|+++|++. ..... ....+|.. .|| .|+..+.
T Consensus 318 ~~~g~~~~lt~~~~-~-~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~i~~~s~ 393 (429)
T PRK03629 318 INGGAPQRITWEGS-Q-NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTMVIYSSS 393 (429)
T ss_pred CCCCCeEEeecCCC-C-ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCEEEEEEc
Confidence 99887643322211 1 1222222 3445544432 11246899999988753 22211 11234444 334 4555554
Q ss_pred ceeEeecCCcc
Q 040693 360 YKVTVGFGNKN 370 (382)
Q Consensus 360 ~g~~~~~~~~~ 370 (382)
++....++.++
T Consensus 394 ~~~~~~l~~~~ 404 (429)
T PRK03629 394 QGMGSVLNLVS 404 (429)
T ss_pred CCCceEEEEEE
Confidence 44433334333
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.04 Score=56.08 Aligned_cols=175 Identities=14% Similarity=0.205 Sum_probs=111.1
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
+..|.+.|..+|+.+=...... .|+- .+. ..++.+++++.|+.+-.+|
T Consensus 310 D~tVkVW~v~n~~~l~l~~~h~----------------------------~~V~-~v~---~~~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLRGHT----------------------------GPVN-CVQ---LDEPLLVSGSYDGTVKVWD 357 (537)
T ss_pred CceEEEEeccCcceEEEecccc----------------------------ccEE-EEE---ecCCEEEEEecCceEEEEE
Confidence 5789999988888877665421 1111 111 1268899999999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeC-CeEEEEecCccccccccCCCCCCCCCceEEEEECCCC-cEEeeecCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDE-RRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG-NVLWSTADPSNG 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG-~~~W~~~~~~~~ 299 (382)
+.+++.+-....- ........++. +.+|-+ ..++.|.+.|+.++ +.+-.......
T Consensus 358 ~~~~~cl~sl~gH-----~~~V~sl~~~~~~~~~Sg-----------------s~D~~IkvWdl~~~~~c~~tl~~h~~- 414 (537)
T KOG0274|consen 358 PRTGKCLKSLSGH-----TGRVYSLIVDSENRLLSG-----------------SLDTTIKVWDLRTKRKCIHTLQGHTS- 414 (537)
T ss_pred hhhceeeeeecCC-----cceEEEEEecCcceEEee-----------------eeccceEeecCCchhhhhhhhcCCcc-
Confidence 9999999887732 12333333455 566655 34578999999999 55555544432
Q ss_pred CCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEEeCCEEEEEeCceeEeecCCccCCCCCeE
Q 040693 300 TAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 300 ~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
....+...+..+...+. ++.|..-|.++++.+-..+.+. .........+..++++..+|. +.+| |.++|+..
T Consensus 415 -~v~~l~~~~~~Lvs~~a--D~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~s~~~~~-~~l~--dl~~~~~~ 487 (537)
T KOG0274|consen 415 -LVSSLLLRDNFLVSSSA--DGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILCSSDDGS-VKLW--DLRSGTLI 487 (537)
T ss_pred -cccccccccceeEeccc--cccEEEeecccCceeeeeccCCcccEEEeecCcceEEEEecCCe-eEEE--ecccCchh
Confidence 12333445566666554 8999999999999999888751 222222222456666655544 6666 44445543
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.22 Score=47.37 Aligned_cols=127 Identities=13% Similarity=0.143 Sum_probs=70.7
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++++|+.+ ..|+.-.+-+. ........++.++.||+...... .....+.++|+++. .|+.-
T Consensus 139 ~~v~~yd~~~--~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~------------~~~~~~~~yd~~~~--~W~~~ 201 (323)
T TIGR03548 139 NKSYLFNLET--QEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSN------------IAYTDGYKYSPKKN--QWQKV 201 (323)
T ss_pred ceEEEEcCCC--CCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCC------------ccccceEEEecCCC--eeEEC
Confidence 4689999885 45886432111 11122233346788888644311 11124689999876 48754
Q ss_pred CCC-----CC--CCCcceEEeCCEEEEeeecC------------------------------------CCcEEEEeCCCC
Q 040693 295 DPS-----NG--TAPGPVTVANGVLFGGSTYR------------------------------------QGPIYAMDVKTG 331 (382)
Q Consensus 295 ~~~-----~~--~~~~~~~~~~~~v~~~~~~~------------------------------------~g~l~~ld~~tG 331 (382)
.+. +. .....+.+.++.+|+..... ...+.++|+.+.
T Consensus 202 ~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~ 281 (323)
T TIGR03548 202 ADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTG 281 (323)
T ss_pred CCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCC
Confidence 321 10 11222334466777654211 135899999876
Q ss_pred cEeEEEec--C--CceecceEEeCCEEEEEeCc
Q 040693 332 KILWSYDT--G--ATIYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 332 ~ilw~~~~--~--~~~~~~p~~~~g~lyv~~~~ 360 (382)
+ |+.-. + .....+.++.+++||+..+.
T Consensus 282 ~--W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 282 K--WKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred e--eeEcccccccccCchheEEECCEEEEEecc
Confidence 5 86522 2 12334567799999998875
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.21 Score=50.01 Aligned_cols=143 Identities=12% Similarity=0.138 Sum_probs=69.5
Q ss_pred cEEEEEccCc--EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSG--FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g--~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.++++...++ .|+.+|.++|+..- ..... .......|.+ ++..+++.... .....|+.+|
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~-~~~~~p~wSp--DG~~I~f~s~~--------------~g~~~Iy~~d 336 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTR-ITRHR-AIDTEPSWHP--DGKSLIFTSER--------------GGKPQIYRVN 336 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEE-CccCC-CCccceEECC--CCCEEEEEECC--------------CCCceEEEEE
Confidence 3444444444 69999999886532 21111 0111122222 56666665322 1224699999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCC--CcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEe
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQ--GPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGN 358 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~ 358 (382)
+.+|+..--.. .... ...+... ++..+++.+. .. ..|+.+|+++|++.- ... ...-.+|.. .+..|+..+
T Consensus 337 l~~g~~~~Lt~-~g~~-~~~~~~SpDG~~l~~~~~-~~g~~~I~~~dl~~g~~~~-lt~-~~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 337 LASGKVSRLTF-EGEQ-NLGGSITPDGRSMIMVNR-TNGKFNIARQDLETGAMQV-LTS-TRLDESPSVAPNGTMVIYST 411 (448)
T ss_pred CCCCCEEEEec-CCCC-CcCeeECCCCCEEEEEEe-cCCceEEEEEECCCCCeEE-ccC-CCCCCCceECCCCCEEEEEE
Confidence 99997643322 1111 1222222 4456655543 22 368899999887532 111 112223433 344555555
Q ss_pred CceeEeecCCccC
Q 040693 359 GYKVTVGFGNKNF 371 (382)
Q Consensus 359 ~~g~~~~~~~~~~ 371 (382)
..+....+|.++.
T Consensus 412 ~~~g~~~l~~~~~ 424 (448)
T PRK04792 412 TYQGKQVLAAVSI 424 (448)
T ss_pred ecCCceEEEEEEC
Confidence 4433333454544
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.33 Score=47.70 Aligned_cols=131 Identities=18% Similarity=0.165 Sum_probs=63.5
Q ss_pred EEEEEccC--cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 207 IVVAVQKS--GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 207 ~v~~~~~~--g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+++....+ ..++.+|..+++..--..... ......|.+ ++..|++.... .....|+.+|+
T Consensus 248 l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~--~~~~~~~s~--dg~~l~~~s~~--------------~g~~~iy~~d~ 309 (417)
T TIGR02800 248 LAVSLSKDGNPDIYVMDLDGKQLTRLTNGPG--IDTEPSWSP--DGKSIAFTSDR--------------GGSPQIYMMDA 309 (417)
T ss_pred EEEEECCCCCccEEEEECCCCCEEECCCCCC--CCCCEEECC--CCCEEEEEECC--------------CCCceEEEEEC
Confidence 44444433 469999998876432211110 111122222 56666554322 11246999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCC---cEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEe
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQG---PIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGN 358 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g---~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~ 358 (382)
.+++..-... .. .....+... ++..+++... .+ .|+.+|..+++..--.. ......|.. .++.|++.+
T Consensus 310 ~~~~~~~l~~-~~-~~~~~~~~spdg~~i~~~~~--~~~~~~i~~~d~~~~~~~~l~~--~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 310 DGGEVRRLTF-RG-GYNASPSWSPDGDLIAFVHR--EGGGFNIAVMDLDGGGERVLTD--TGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred CCCCEEEeec-CC-CCccCeEECCCCCEEEEEEc--cCCceEEEEEeCCCCCeEEccC--CCCCCCceECCCCCEEEEEE
Confidence 9887542222 21 112222222 3456666553 33 79999998865432111 112233443 345566655
Q ss_pred Cce
Q 040693 359 GYK 361 (382)
Q Consensus 359 ~~g 361 (382)
..+
T Consensus 384 ~~~ 386 (417)
T TIGR02800 384 TRG 386 (417)
T ss_pred eCC
Confidence 544
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.42 Score=49.09 Aligned_cols=144 Identities=9% Similarity=0.041 Sum_probs=82.9
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
..++++++.|+.+..+|..+++.+..+.... ......+ ++.++.++ ..++.|..+
T Consensus 138 ~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~------~V~SlswspdG~lLat~-----------------s~D~~IrIw 194 (568)
T PTZ00420 138 YYIMCSSGFDSFVNIWDIENEKRAFQINMPK------KLSSLKWNIKGNLLSGT-----------------CVGKHMHII 194 (568)
T ss_pred CeEEEEEeCCCeEEEEECCCCcEEEEEecCC------cEEEEEECCCCCEEEEE-----------------ecCCEEEEE
Confidence 3455677889999999999999887765321 1112222 44444433 345789999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE-----eCCEEEEeeecC--CCcEEEEeCCC-CcEeEEEecCCcee-cceEE--eC
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV-----ANGVLFGGSTYR--QGPIYAMDVKT-GKILWSYDTGATIY-GGASV--SN 351 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~--~g~l~~ld~~t-G~ilw~~~~~~~~~-~~p~~--~~ 351 (382)
|+++|+.+-+............+.. ++++++.+.... ...|...|..+ ++++-...+..... -.|.. ..
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~t 274 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDEST 274 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCC
Confidence 9999998876654432111111111 235555544311 13689999884 67776555443211 12333 34
Q ss_pred CEEEEEeCceeEeecCCccC
Q 040693 352 GCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 352 g~lyv~~~~g~~~~~~~~~~ 371 (382)
+.+|++...+..+.+|.+..
T Consensus 275 g~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 275 GLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred CCEEEEEECCCeEEEEEccC
Confidence 77887654445566777654
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.015 Score=51.61 Aligned_cols=180 Identities=11% Similarity=0.088 Sum_probs=110.3
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
..|...|+..|..+-++.-.+..+.+.+. . ..+..+..+..|-+++.+|.
T Consensus 39 rtvrLWNp~rg~liktYsghG~EVlD~~~-----------------------s-------~Dnskf~s~GgDk~v~vwDV 88 (307)
T KOG0316|consen 39 RTVRLWNPLRGALIKTYSGHGHEVLDAAL-----------------------S-------SDNSKFASCGGDKAVQVWDV 88 (307)
T ss_pred ceEEeecccccceeeeecCCCceeeeccc-----------------------c-------ccccccccCCCCceEEEEEc
Confidence 68889999999999988776654321110 0 11456777888999999999
Q ss_pred CCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCc--EEeeecCCCCCC
Q 040693 223 DSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGN--VLWSTADPSNGT 300 (382)
Q Consensus 223 ~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~~ 300 (382)
+||+++-++.--. +..+..--.++..|+++. ..+..+.++|.++-. ++-..+... .
T Consensus 89 ~TGkv~Rr~rgH~----aqVNtV~fNeesSVv~Sg----------------sfD~s~r~wDCRS~s~ePiQildea~--D 146 (307)
T KOG0316|consen 89 NTGKVDRRFRGHL----AQVNTVRFNEESSVVASG----------------SFDSSVRLWDCRSRSFEPIQILDEAK--D 146 (307)
T ss_pred ccCeeeeeccccc----ceeeEEEecCcceEEEec----------------cccceeEEEEcccCCCCccchhhhhc--C
Confidence 9999987776211 111111111344444442 456889999998663 332222211 2
Q ss_pred CCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCCCeEEE
Q 040693 301 APGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 301 ~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~ 379 (382)
....+.+.+..++.++. +|.+..+|...|++.-- ..+.++.+.-.. .++.+.+++-++. .. -+|-.||++|=+
T Consensus 147 ~V~Si~v~~heIvaGS~--DGtvRtydiR~G~l~sD-y~g~pit~vs~s~d~nc~La~~l~st-lr--LlDk~tGklL~s 220 (307)
T KOG0316|consen 147 GVSSIDVAEHEIVAGSV--DGTVRTYDIRKGTLSSD-YFGHPITSVSFSKDGNCSLASSLDST-LR--LLDKETGKLLKS 220 (307)
T ss_pred ceeEEEecccEEEeecc--CCcEEEEEeecceeehh-hcCCcceeEEecCCCCEEEEeeccce-ee--ecccchhHHHHH
Confidence 23455566778888886 99999999998875432 233332222222 5566666666544 33 367788988765
Q ss_pred E
Q 040693 380 F 380 (382)
Q Consensus 380 ~ 380 (382)
|
T Consensus 221 Y 221 (307)
T KOG0316|consen 221 Y 221 (307)
T ss_pred h
Confidence 5
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.34 Score=47.35 Aligned_cols=207 Identities=19% Similarity=0.215 Sum_probs=129.1
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
+.++|+.... ...+..+|.++-+++-....+... ...+++++++.+|+....
T Consensus 85 ~~~vyv~~~~-------------~~~v~vid~~~~~~~~~~~vG~~P--------------~~~~~~~~~~~vYV~n~~- 136 (381)
T COG3391 85 GNKVYVTTGD-------------SNTVSVIDTATNTVLGSIPVGLGP--------------VGLAVDPDGKYVYVANAG- 136 (381)
T ss_pred CCeEEEecCC-------------CCeEEEEcCcccceeeEeeeccCC--------------ceEEECCCCCEEEEEecc-
Confidence 4567776642 568999997777777666664321 136788888899998652
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFG 190 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (382)
...+.+..+|..|++++=......
T Consensus 137 -----------------------------~~~~~vsvid~~t~~~~~~~~vG~--------------------------- 160 (381)
T COG3391 137 -----------------------------NGNNTVSVIDAATNKVTATIPVGN--------------------------- 160 (381)
T ss_pred -----------------------------cCCceEEEEeCCCCeEEEEEecCC---------------------------
Confidence 024899999999999887744432
Q ss_pred CCceEEEeeeCceeecEEEEE-ccCcEEEEEeCCCCCeeeeeccCC-CCCCCCcccceee--eCCeEEEEecCccccccc
Q 040693 191 EAPMMLSMYRNKVKHDIVVAV-QKSGFAWALDRDSGSLIWSMEAGP-GGLGGGAMWGAAT--DERRIYTNIANSQHKNFN 266 (382)
Q Consensus 191 ~~p~~~~~~~~g~~~~~v~~~-~~~g~l~ald~~tG~~~W~~~~~~-~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~ 266 (382)
.|.-..+..+ +..+++. ..++.+..+|.. +..+|+ .... ....+...+...+ ++..+|+...+
T Consensus 161 -~P~~~a~~p~---g~~vyv~~~~~~~v~vi~~~-~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~------- 227 (381)
T COG3391 161 -TPTGVAVDPD---GNKVYVTNSDDNTVSVIDTS-GNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDG------- 227 (381)
T ss_pred -CcceEEECCC---CCeEEEEecCCCeEEEEeCC-Ccceec-cccccccccCCCCceEEECCCCCEEEEEecc-------
Confidence 1211111222 3445444 467889999965 556664 2211 1112223344444 67889987544
Q ss_pred cCCCCCCCCCceEEEEECCCCcEEee-ecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc
Q 040693 267 LKPSKNSTIAGGWVAMDASNGNVLWS-TADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 267 ~~~~~~~~~~g~v~a~d~~tG~~~W~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
..++.+..+|..+++..+. ..............-++..+|+... ..+.+..+|..+.++.-....+..
T Consensus 228 -------~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-~~~~V~vid~~~~~v~~~~~~~~~ 296 (381)
T COG3391 228 -------SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-QGGTVSVIDGATDRVVKTGPTGNE 296 (381)
T ss_pred -------CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEec-CCCeEEEEeCCCCceeeeeccccc
Confidence 2236899999999999988 3333311112222224678888764 468999999999888877766543
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.066 Score=55.38 Aligned_cols=118 Identities=21% Similarity=0.245 Sum_probs=87.2
Q ss_pred eEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEE
Q 040693 27 GTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIA 106 (382)
Q Consensus 27 p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~ 106 (382)
|..+=+++.+|.. +|.+..+|..|||++.+++--. ++-.....+|++| .|.++
T Consensus 168 P~TYLNKIvvGs~--------------~G~lql~Nvrt~K~v~~f~~~~---------s~IT~ieqsPaLD----VVaiG 220 (910)
T KOG1539|consen 168 PSTYLNKIVVGSS--------------QGRLQLWNVRTGKVVYTFQEFF---------SRITAIEQSPALD----VVAIG 220 (910)
T ss_pred chhheeeEEEeec--------------CCcEEEEEeccCcEEEEecccc---------cceeEeccCCcce----EEEEe
Confidence 3344477888886 8999999999999999987532 2333444578886 78888
Q ss_pred cCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCC
Q 040693 107 TGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPD 186 (382)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (382)
..+ |.|+.+|.+.+|++-+++-....+
T Consensus 221 ~~~---------------------------------G~ViifNlK~dkil~sFk~d~g~V-------------------- 247 (910)
T KOG1539|consen 221 LEN---------------------------------GTVIIFNLKFDKILMSFKQDWGRV-------------------- 247 (910)
T ss_pred ccC---------------------------------ceEEEEEcccCcEEEEEEccccce--------------------
Confidence 776 999999999999999998762211
Q ss_pred CCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeecc
Q 040693 187 ADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEA 233 (382)
Q Consensus 187 ~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~ 233 (382)
.-.+..-|| ..++.++...|.+..+|.+.-+++|...-
T Consensus 248 -------tslSFrtDG--~p~las~~~~G~m~~wDLe~kkl~~v~~n 285 (910)
T KOG1539|consen 248 -------TSLSFRTDG--NPLLASGRSNGDMAFWDLEKKKLINVTRN 285 (910)
T ss_pred -------eEEEeccCC--CeeEEeccCCceEEEEEcCCCeeeeeeec
Confidence 112222334 56666778889999999999999998874
|
|
| >PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.009 Score=57.25 Aligned_cols=83 Identities=19% Similarity=0.404 Sum_probs=40.6
Q ss_pred CCceEEEEECCC-CcEEeeecCCCCCC-CCcceEEe-C-----CEEEEeeecCCCcEEEEeCCCCc-EeEEEecC----C
Q 040693 275 IAGGWVAMDASN-GNVLWSTADPSNGT-APGPVTVA-N-----GVLFGGSTYRQGPIYAMDVKTGK-ILWSYDTG----A 341 (382)
Q Consensus 275 ~~g~v~a~d~~t-G~~~W~~~~~~~~~-~~~~~~~~-~-----~~v~~~~~~~~g~l~~ld~~tG~-ilw~~~~~----~ 341 (382)
....|+.+|++| |+++|++..+.... ...+..++ + +++|++.. .|.|+-||..+.. -.|+...- .
T Consensus 179 ~~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl--~GnlwR~dl~~~~~~~~~~~~~~~g~~ 256 (335)
T PF05567_consen 179 GGAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDL--GGNLWRFDLSSANPSSWSVRTIFSGTQ 256 (335)
T ss_dssp --EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEET--TSEEEEEE--TTSTT-GG-EESGGG--
T ss_pred CCcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcC--CCcEEEEECCCCCcccceeeecccCcC
Confidence 346799999999 99999988655221 12233333 1 28999985 8999999987422 23543211 2
Q ss_pred ceecceEEe----CCEEEEEeC
Q 040693 342 TIYGGASVS----NGCIYMGNG 359 (382)
Q Consensus 342 ~~~~~p~~~----~g~lyv~~~ 359 (382)
++.+.|.+. ...||++++
T Consensus 257 PIt~aP~v~~~~~~~~V~fGTG 278 (335)
T PF05567_consen 257 PITAAPAVVRDPDGRWVFFGTG 278 (335)
T ss_dssp ---S--EEEE-TTSSEEEEE--
T ss_pred CeEecceEEecCCCCEEEEEeC
Confidence 456666652 345566654
|
PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A. |
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.033 Score=56.16 Aligned_cols=174 Identities=14% Similarity=0.132 Sum_probs=115.3
Q ss_pred CCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEE
Q 040693 140 NHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219 (382)
Q Consensus 140 ~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~a 219 (382)
..+|.|.-+|+.+++++-..+..+..+|..+-. .....+.++..+|.++-
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~------------------------------p~~~~l~IgcddGvl~~ 136 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNGGAIWSIAIN------------------------------PENTILAIGCDDGVLYD 136 (691)
T ss_pred cCCceEEEEecccCceeEEecCCCcceeEEEeC------------------------------CccceEEeecCCceEEE
Confidence 345899999999999999999888877744321 11466677778899999
Q ss_pred EeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 220 LDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 220 ld~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
++...+++..+..+.-. -+....... ++-.++.+ ..+|.|.++|.++|..+.......
T Consensus 137 ~s~~p~~I~~~r~l~rq---~sRvLslsw~~~~~~i~~G-----------------s~Dg~Iriwd~~~~~t~~~~~~~~ 196 (691)
T KOG2048|consen 137 FSIGPDKITYKRSLMRQ---KSRVLSLSWNPTGTKIAGG-----------------SIDGVIRIWDVKSGQTLHIITMQL 196 (691)
T ss_pred EecCCceEEEEeecccc---cceEEEEEecCCccEEEec-----------------ccCceEEEEEcCCCceEEEeeecc
Confidence 99999999998887531 112222222 22334544 456889999999999988554433
Q ss_pred CCCCC-------cceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEee
Q 040693 298 NGTAP-------GPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVG 365 (382)
Q Consensus 298 ~~~~~-------~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~ 365 (382)
....- +....-++.+..+.. .|.|-..|.++|..+-.+..-.+..-+.++ .+++||++..++.+..
T Consensus 197 d~l~k~~~~iVWSv~~Lrd~tI~sgDS--~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~ 271 (691)
T KOG2048|consen 197 DRLSKREPTIVWSVLFLRDSTIASGDS--AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQ 271 (691)
T ss_pred cccccCCceEEEEEEEeecCcEEEecC--CceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEE
Confidence 11111 122234566666664 788888888888877766554444444444 3479999988887544
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.074 Score=50.06 Aligned_cols=83 Identities=12% Similarity=0.121 Sum_probs=62.4
Q ss_pred CCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeC
Q 040693 274 TIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSN 351 (382)
Q Consensus 274 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~ 351 (382)
..+++|..+|..||..+.+.....+ +...+++. |.+++-.. +++.|.+.|.++++-+-..+....+..+.-...
T Consensus 311 SrDktIk~wdv~tg~cL~tL~ghdn--wVr~~af~p~Gkyi~Sca--DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~ 386 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMCLFTLVGHDN--WVRGVAFSPGGKYILSCA--DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK 386 (406)
T ss_pred cccceEEEEeccCCeEEEEEecccc--eeeeeEEcCCCeEEEEEe--cCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence 5678999999999999999876654 33344443 45666666 599999999999988777776555666777778
Q ss_pred CEEEEEeCc
Q 040693 352 GCIYMGNGY 360 (382)
Q Consensus 352 g~lyv~~~~ 360 (382)
...||.++.
T Consensus 387 ~~p~VvTGs 395 (406)
T KOG0295|consen 387 TAPYVVTGS 395 (406)
T ss_pred CCceEEecc
Confidence 888888763
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.15 Score=46.61 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=62.0
Q ss_pred ecEEEEEc-cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQ-KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~-~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
++.|+... ....|.-+|+.+|..-=--.++.........|.. .-+.+.++. ...+.++.||
T Consensus 199 dGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsd--pig~~witt----------------wg~g~l~rfd 260 (353)
T COG4257 199 DGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSD--PIGRAWITT----------------WGTGSLHRFD 260 (353)
T ss_pred CCcEEEEeccccceEEcccccCCcceecCCCcccccccccccC--ccCcEEEec----------------cCCceeeEeC
Confidence 45565553 3457888999988322111111100111222221 236677764 3357899999
Q ss_pred CCCCcEEee-ecCCCCCCCCcceEEeC-CEEEEeeecCCCcEEEEeCCCCc
Q 040693 284 ASNGNVLWS-TADPSNGTAPGPVTVAN-GVLFGGSTYRQGPIYAMDVKTGK 332 (382)
Q Consensus 284 ~~tG~~~W~-~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~l~~ld~~tG~ 332 (382)
+++-. |. ++++......-.+.+++ ++|+.... ..|.|.-||+.+-+
T Consensus 261 Ps~~s--W~eypLPgs~arpys~rVD~~grVW~sea-~agai~rfdpeta~ 308 (353)
T COG4257 261 PSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLSEA-DAGAIGRFDPETAR 308 (353)
T ss_pred ccccc--ceeeeCCCCCCCcceeeeccCCcEEeecc-ccCceeecCcccce
Confidence 98876 65 45555333344555664 89998654 57899999988544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.62 Score=46.28 Aligned_cols=142 Identities=19% Similarity=0.175 Sum_probs=67.8
Q ss_pred EEEEEccCc--EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 207 IVVAVQKSG--FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 207 ~v~~~~~~g--~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+++....++ .+|.+|..+++.. +..... .......|.+ |+..+++.... .....|+.+|.
T Consensus 254 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~-~~~~~~~wSp--DG~~l~f~s~~--------------~g~~~Iy~~~~ 315 (427)
T PRK02889 254 LAVALSRDGNSQIYTVNADGSGLR-RLTQSS-GIDTEPFFSP--DGRSIYFTSDR--------------GGAPQIYRMPA 315 (427)
T ss_pred EEEEEccCCCceEEEEECCCCCcE-ECCCCC-CCCcCeEEcC--CCCEEEEEecC--------------CCCcEEEEEEC
Confidence 444444444 6888898766532 222111 0111122322 56666654321 11245888888
Q ss_pred CCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCC--CcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeC
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQ--GPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNG 359 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~--g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~ 359 (382)
.+|+..-.. .... ....+... ++..++..+. .. ..|+.+|.++|++..-.. ......|.. .+..|+..+.
T Consensus 316 ~~g~~~~lt-~~g~-~~~~~~~SpDG~~Ia~~s~-~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~ 390 (427)
T PRK02889 316 SGGAAQRVT-FTGS-YNTSPRISPDGKLLAYISR-VGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQ 390 (427)
T ss_pred CCCceEEEe-cCCC-CcCceEECCCCCEEEEEEc-cCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEe
Confidence 877643222 1111 11222222 3455554442 12 269999999888654322 222244544 3444555554
Q ss_pred ceeEeecCCccC
Q 040693 360 YKVTVGFGNKNF 371 (382)
Q Consensus 360 ~g~~~~~~~~~~ 371 (382)
.+....+|.++.
T Consensus 391 ~~g~~~l~~~~~ 402 (427)
T PRK02889 391 QGGRSVLAAVSS 402 (427)
T ss_pred cCCCEEEEEEEC
Confidence 443344555555
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.1 Score=49.49 Aligned_cols=53 Identities=19% Similarity=0.179 Sum_probs=40.3
Q ss_pred CCCcEEEEeCCCCcEeEEEecC-CceecceEEeCCEEEEEeCceeEeecCCccC
Q 040693 319 RQGPIYAMDVKTGKILWSYDTG-ATIYGGASVSNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 319 ~~g~l~~ld~~tG~ilw~~~~~-~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
-+..|...|..+|+-+-.+.-. +.++.-....|.||.|+.+...+.++|.+.+
T Consensus 387 FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 387 FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeee
Confidence 4888999999999988877522 3455555568999999999888888776554
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.38 Score=49.07 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=138.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+..|..+|..+|+.+=..-.+ +.+.+|. ..+....+.++-+..
T Consensus 227 ~~tl~~~~~~~~~~i~~~l~G----------H~g~V~~--l~~~~~~~~lvsgS~------------------------- 269 (537)
T KOG0274|consen 227 DSTLHLWDLNNGYLILTRLVG----------HFGGVWG--LAFPSGGDKLVSGST------------------------- 269 (537)
T ss_pred CceeEEeecccceEEEeeccC----------CCCCcee--EEEecCCCEEEEEec-------------------------
Confidence 778889999998887662221 1222332 233333456666554
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+..+...|..||+-.=.+..... +-....+ ....++.++.
T Consensus 270 --------D~t~rvWd~~sg~C~~~l~gh~s---------------------------tv~~~~~-----~~~~~~sgs~ 309 (537)
T KOG0274|consen 270 --------DKTERVWDCSTGECTHSLQGHTS---------------------------SVRCLTI-----DPFLLVSGSR 309 (537)
T ss_pred --------CCcEEeEecCCCcEEEEecCCCc---------------------------eEEEEEc-----cCceEeeccC
Confidence 37888889999988877764332 1122211 1345556678
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
|..+.+.|..+|+.+=.... ..........+++.++.+ ..++.|-.+|+.+++.+-..
T Consensus 310 D~tVkVW~v~n~~~l~l~~~-----h~~~V~~v~~~~~~lvsg-----------------s~d~~v~VW~~~~~~cl~sl 367 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLRG-----HTGPVNCVQLDEPLLVSG-----------------SYDGTVKVWDPRTGKCLKSL 367 (537)
T ss_pred CceEEEEeccCcceEEEecc-----ccccEEEEEecCCEEEEE-----------------ecCceEEEEEhhhceeeeee
Confidence 99999999999988877662 111223333367778877 55689999999999999887
Q ss_pred cCCCCCCCCcceEEeC-CEEEEeeecCCCcEEEEeCCCC-cEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccC
Q 040693 294 ADPSNGTAPGPVTVAN-GVLFGGSTYRQGPIYAMDVKTG-KILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 294 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~l~~ld~~tG-~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
..... ....+.+++ ..++-++. ++.|.+.|+.+. +-+-.++.......... ..+..+++.+....++++ |.
T Consensus 368 ~gH~~--~V~sl~~~~~~~~~Sgs~--D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~-~~~~~Lvs~~aD~~Ik~W--D~ 440 (537)
T KOG0274|consen 368 SGHTG--RVYSLIVDSENRLLSGSL--DTTIKVWDLRTKRKCIHTLQGHTSLVSSLL-LRDNFLVSSSADGTIKLW--DA 440 (537)
T ss_pred cCCcc--eEEEEEecCcceEEeeee--ccceEeecCCchhhhhhhhcCCcccccccc-cccceeEeccccccEEEe--ec
Confidence 76543 234456677 78888885 899999999988 55555444444343333 344455554444456667 44
Q ss_pred CCCCeEEE
Q 040693 372 TSGTSLYA 379 (382)
Q Consensus 372 ~~g~~l~~ 379 (382)
.+|+.+-.
T Consensus 441 ~~~~~~~~ 448 (537)
T KOG0274|consen 441 EEGECLRT 448 (537)
T ss_pred ccCceeee
Confidence 44665544
|
|
| >KOG2103 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.032 Score=57.56 Aligned_cols=187 Identities=13% Similarity=0.188 Sum_probs=108.9
Q ss_pred ccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCc
Q 040693 63 KTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHS 142 (382)
Q Consensus 63 ~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (382)
.-||..|+...-..... ..-.++..+.++++.+..
T Consensus 22 q~gkfdwr~~~vG~~k~------------~~~~~~t~~~rlivsT~~--------------------------------- 56 (910)
T KOG2103|consen 22 QAGKFDWRQQLVGVKKV------------NFLVYDTKSKRLIVSTEK--------------------------------- 56 (910)
T ss_pred HhhhcchhhhcccceeE------------EEEeecCCCceEEEEecc---------------------------------
Confidence 46788888766321110 134566677789998764
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccC-cEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKS-GFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~-g~l~ald 221 (382)
+-+.+||+.||+++|+.-+.+...- . ..|.. . + -+.+ ..+++.|
T Consensus 57 ~vlAsL~~~tGei~WRqvl~~~~~~---------------------~-~~~~~---------~---~-iS~dg~~lr~wn 101 (910)
T KOG2103|consen 57 GVLASLNLRTGEIIWRQVLEPKTSG---------------------L-GVPLT---------N---T-ISVDGRYLRSWN 101 (910)
T ss_pred chhheecccCCcEEEEEeccCCCcc---------------------c-Cccee---------E---E-EccCCcEEEeec
Confidence 7899999999999999987765210 0 11111 1 1 2223 3699999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
...|-+.|+.+.... . ......+-.+..++. ....+.|+++|...+......
T Consensus 102 ~~~g~l~~~i~l~~g-~---~~~~~~v~~~i~v~~------------------------g~~~~~g~l~w~~~~~~~~~~ 153 (910)
T KOG2103|consen 102 TNNGILDWEIELADG-F---KGLLLEVNKGIAVLN------------------------GHTRKFGELKWVESFSISIEE 153 (910)
T ss_pred CCCceeeeecccccc-c---ceeEEEEccceEEEc------------------------ceeccccceeehhhccccchh
Confidence 999999999997542 1 111111222333332 145678999999876542111
Q ss_pred C-c-ceEEeCCEEEEee--ecCCCcEEEEeCCCCcEe-EEEecCCceecceE--EeCCEEEEE
Q 040693 302 P-G-PVTVANGVLFGGS--TYRQGPIYAMDVKTGKIL-WSYDTGATIYGGAS--VSNGCIYMG 357 (382)
Q Consensus 302 ~-~-~~~~~~~~v~~~~--~~~~g~l~~ld~~tG~il-w~~~~~~~~~~~p~--~~~g~lyv~ 357 (382)
. . ......+.+|... ......+.+++.++|++. |+.....+...... ...+.++++
T Consensus 154 ~~q~~~~~~t~vvy~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~~pw~~~~~c~~~k~~vl~~ 216 (910)
T KOG2103|consen 154 DLQDAKIYGTDVVYVLGLLKRSGSCVQQVFSDDGEVTGPQSTVLGPWFKVLSCSTDKEVVLVC 216 (910)
T ss_pred HHHHhhhccCcEEEEEEEEecCCceEEEEEccCCcEecceeeeecCcccccccccccceEEEc
Confidence 1 1 1112234444322 112556889999999998 77776665554443 244444444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.71 Score=46.18 Aligned_cols=114 Identities=12% Similarity=0.117 Sum_probs=57.3
Q ss_pred cEEEEEcc--CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQK--SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+++.... ...++.+|.++|+..--..... ......+.+ +++.+++.... .....|+.+|
T Consensus 319 ~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~Sp--DG~~l~~~~~~--------------~g~~~I~~~d 380 (448)
T PRK04792 319 SLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSITP--DGRSMIMVNRT--------------NGKFNIARQD 380 (448)
T ss_pred EEEEEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeECC--CCCEEEEEEec--------------CCceEEEEEE
Confidence 34444433 2479999999887532211110 111112221 66677665332 1124688899
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeee-cCCCcEEEEeCCCCcEeEEEecCC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGST-YRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
+.+|+..-..... ....|... ++..++..+. .....|+.+|. +|+...+...+.
T Consensus 381 l~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~ 436 (448)
T PRK04792 381 LETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ 436 (448)
T ss_pred CCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence 9999764322221 11222222 3445555443 11234888887 577777665543
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.9 Score=46.71 Aligned_cols=147 Identities=12% Similarity=0.094 Sum_probs=80.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+++.+.+...... ..-..+..+ +.++.++..++.+..+|
T Consensus 147 DgtIrIWDl~tg~~~~~i~~~~~----------------------------V~Slswspd---G~lLat~s~D~~IrIwD 195 (568)
T PTZ00420 147 DSFVNIWDIENEKRAFQINMPKK----------------------------LSSLKWNIK---GNLLSGTCVGKHMHIID 195 (568)
T ss_pred CCeEEEEECCCCcEEEEEecCCc----------------------------EEEEEECCC---CCEEEEEecCCEEEEEE
Confidence 48899999999998877643211 001112222 35666677889999999
Q ss_pred CCCCCeeeeeccCCCCCCCCccccee--eeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCC-CcEEeeecCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAA--TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASN-GNVLWSTADPSN 298 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~t-G~~~W~~~~~~~ 298 (382)
..+|+.+-++..-.........|... .+++.++.+..+. ...+.|..+|+++ ++++-.......
T Consensus 196 ~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~-------------~~~R~VkLWDlr~~~~pl~~~~ld~~ 262 (568)
T PTZ00420 196 PRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK-------------NNMREMKLWDLKNTTSALVTMSIDNA 262 (568)
T ss_pred CCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCC-------------CCccEEEEEECCCCCCceEEEEecCC
Confidence 99999886654321100001112111 1445555432210 1224699999985 666655544331
Q ss_pred CCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcE
Q 040693 299 GTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 299 ~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
.....|..- +.+.+|++.. .++.|+.++..++.+
T Consensus 263 ~~~L~p~~D~~tg~l~lsGk-GD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGK-GDGNCRYYQHSLGSI 297 (568)
T ss_pred ccceEEeeeCCCCCEEEEEE-CCCeEEEEEccCCcE
Confidence 111112211 2355565442 589999999887754
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.55 Score=44.02 Aligned_cols=240 Identities=15% Similarity=0.148 Sum_probs=120.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
--.++.||..+|+++=.....+. .++-|+ .++.+++.++|..-++ +
T Consensus 27 G~~~~v~D~~~g~~~~~~~a~~g-----RHFyGH------g~fs~dG~~LytTEnd-~---------------------- 72 (305)
T PF07433_consen 27 GTFALVFDCRTGQLLQRLWAPPG-----RHFYGH------GVFSPDGRLLYTTEND-Y---------------------- 72 (305)
T ss_pred CcEEEEEEcCCCceeeEEcCCCC-----CEEecC------EEEcCCCCEEEEeccc-c----------------------
Confidence 44689999999998865543221 134455 3456666677765433 1
Q ss_pred CCCCCCCCcceEEEEECC-CCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeC-----ceeecE
Q 040693 134 KCIEPENHSNSLLALDLD-TGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRN-----KVKHDI 207 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~-tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----g~~~~~ 207 (382)
.+..|.|-..|+. +=+.+=+++..... |++-. -.+..+.|+..+.. ...+..
T Consensus 73 -----~~g~G~IgVyd~~~~~~ri~E~~s~GIG---------------PHel~--l~pDG~tLvVANGGI~Thpd~GR~k 130 (305)
T PF07433_consen 73 -----ETGRGVIGVYDAARGYRRIGEFPSHGIG---------------PHELL--LMPDGETLVVANGGIETHPDSGRAK 130 (305)
T ss_pred -----CCCcEEEEEEECcCCcEEEeEecCCCcC---------------hhhEE--EcCCCCEEEEEcCCCccCcccCcee
Confidence 1234888899987 44555455433221 00000 00112222211100 000122
Q ss_pred EEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCC
Q 040693 208 VVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASN 286 (382)
Q Consensus 208 v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~t 286 (382)
+-..+-+..|.-||..+|+++=+..+++.--. .+..-.++ .++.|.+...... ..... --+.++-...
T Consensus 131 LNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~-lSiRHLa~~~~G~V~~a~Q~qg-~~~~~---------~PLva~~~~g 199 (305)
T PF07433_consen 131 LNLDTMQPSLVYLDARSGALLEQVELPPDLHQ-LSIRHLAVDGDGTVAFAMQYQG-DPGDA---------PPLVALHRRG 199 (305)
T ss_pred cChhhcCCceEEEecCCCceeeeeecCccccc-cceeeEEecCCCcEEEEEecCC-CCCcc---------CCeEEEEcCC
Confidence 22223346688899999999977776542111 11111222 4566666533211 11111 1144444333
Q ss_pred CcEEeeecCCCC-----CCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeC
Q 040693 287 GNVLWSTADPSN-----GTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNG 359 (382)
Q Consensus 287 G~~~W~~~~~~~-----~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~ 359 (382)
+... ....+.. .-..+++.+. ++.|.+++. +.+.+..+|.++|+.+-...++.. ...+..++...++++
T Consensus 200 ~~~~-~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsP-rGg~~~~~d~~tg~~~~~~~l~D~--cGva~~~~~f~~ssG 275 (305)
T PF07433_consen 200 GALR-LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSP-RGGRVAVWDAATGRLLGSVPLPDA--CGVAPTDDGFLVSSG 275 (305)
T ss_pred Ccce-eccCChHHHHhhCCceEEEEEeCCCCEEEEECC-CCCEEEEEECCCCCEeeccccCce--eeeeecCCceEEeCC
Confidence 3222 1222110 1234555554 346666665 677888899999999998887642 233334444677777
Q ss_pred ceeEe
Q 040693 360 YKVTV 364 (382)
Q Consensus 360 ~g~~~ 364 (382)
.|.+.
T Consensus 276 ~G~~~ 280 (305)
T PF07433_consen 276 QGQLI 280 (305)
T ss_pred CccEE
Confidence 77743
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.37 Score=43.79 Aligned_cols=142 Identities=11% Similarity=0.111 Sum_probs=88.3
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccce--eeeCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGA--ATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
...++.++.|..+..+|.+|||.+...+.+.+ .... -.+++++.+...+.. ...+.|..+
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~------Vk~~~F~~~gn~~l~~tD~~m------------g~~~~v~~f 125 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLATWKTNSP------VKRVDFSFGGNLILASTDKQM------------GYTCFVSVF 125 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEEeecCCe------eEEEeeccCCcEEEEEehhhc------------CcceEEEEE
Confidence 35677888888899999999999988886542 1111 125566666544422 234668888
Q ss_pred ECC-------CCcEEeeecCCCCCCCCcceEE---eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC-CceecceE-Ee
Q 040693 283 DAS-------NGNVLWSTADPSNGTAPGPVTV---ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG-ATIYGGAS-VS 350 (382)
Q Consensus 283 d~~-------tG~~~W~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~-~~~~~~p~-~~ 350 (382)
|++ .-++.-++..+.. ....+. -+..++.+- .+|.|...|+.+|+++=+.... ...+.... ..
T Consensus 126 di~~~~~~~~s~ep~~kI~t~~s---kit~a~Wg~l~~~ii~Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~ 200 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPTPDS---KITSALWGPLGETIIAGH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSR 200 (327)
T ss_pred EccCChhhhcccCceEEecCCcc---ceeeeeecccCCEEEEec--CCCcEEEEEcccCceeeechhhhccccccccccC
Confidence 887 3345555554431 111111 145666666 4999999999999877655322 22233333 36
Q ss_pred CCEEEEEeCceeEeecCCc
Q 040693 351 NGCIYMGNGYKVTVGFGNK 369 (382)
Q Consensus 351 ~g~lyv~~~~g~~~~~~~~ 369 (382)
+...|++.+.....+++.+
T Consensus 201 d~T~FiT~s~Dttakl~D~ 219 (327)
T KOG0643|consen 201 DRTYFITGSKDTTAKLVDV 219 (327)
T ss_pred CcceEEecccCccceeeec
Confidence 7778888887776666443
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.5 Score=43.02 Aligned_cols=84 Identities=19% Similarity=0.215 Sum_probs=49.5
Q ss_pred CCCceEEEEECCCCcEEeeec-CCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eC
Q 040693 274 TIAGGWVAMDASNGNVLWSTA-DPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SN 351 (382)
Q Consensus 274 ~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~ 351 (382)
..+|.|..+|+++|+++=... ........-.+ ..+...|+... .+..-..+|..+-+++-++.+..+.-...+. ..
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~-s~d~T~FiT~s-~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQF-SRDRTYFITGS-KDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLL 243 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhhccccccccc-cCCcceEEecc-cCccceeeeccceeeEEEeeecccccceeccccc
Confidence 456999999999997765543 22211111122 22344455443 5777888999998898888776654333222 34
Q ss_pred CEEEEEeC
Q 040693 352 GCIYMGNG 359 (382)
Q Consensus 352 g~lyv~~~ 359 (382)
+.+.++.+
T Consensus 244 d~VilgGG 251 (327)
T KOG0643|consen 244 DHVILGGG 251 (327)
T ss_pred ceEEecCC
Confidence 55555433
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.66 Score=45.91 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=76.7
Q ss_pred eeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCe
Q 040693 23 ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNH 102 (382)
Q Consensus 23 ~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 102 (382)
++.+|- |..|+...+ ||.++++|-+||+.+-.+.-.+... +.+| ...-.++..+
T Consensus 196 VRysPD---G~~Fat~gs-------------Dgki~iyDGktge~vg~l~~~~aHk--------GsIf--alsWsPDs~~ 249 (603)
T KOG0318|consen 196 VRYSPD---GSRFATAGS-------------DGKIYIYDGKTGEKVGELEDSDAHK--------GSIF--ALSWSPDSTQ 249 (603)
T ss_pred EEECCC---CCeEEEecC-------------CccEEEEcCCCccEEEEecCCCCcc--------ccEE--EEEECCCCce
Confidence 344554 666665553 9999999999999998877532221 1222 1334455555
Q ss_pred EEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCc-ccccccccCCCCCCCC
Q 040693 103 VYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYD-VWFGACNWYLNPNCPP 181 (382)
Q Consensus 103 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~ 181 (382)
+....++ ..+...|..+.+++-++.+...- ....+
T Consensus 250 ~~T~SaD---------------------------------kt~KIWdVs~~slv~t~~~~~~v~dqqvG----------- 285 (603)
T KOG0318|consen 250 FLTVSAD---------------------------------KTIKIWDVSTNSLVSTWPMGSTVEDQQVG----------- 285 (603)
T ss_pred EEEecCC---------------------------------ceEEEEEeeccceEEEeecCCchhceEEE-----------
Confidence 5554443 67778888888888887776440 01111
Q ss_pred CCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeec
Q 040693 182 GPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSME 232 (382)
Q Consensus 182 ~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~ 232 (382)
++. .++.|+..+-+|++.-|++.+++++-.+.
T Consensus 286 ------------~lW-------qkd~lItVSl~G~in~ln~~d~~~~~~i~ 317 (603)
T KOG0318|consen 286 ------------CLW-------QKDHLITVSLSGTINYLNPSDPSVLKVIS 317 (603)
T ss_pred ------------EEE-------eCCeEEEEEcCcEEEEecccCCChhheec
Confidence 122 15667777778999999999988665554
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.52 Score=47.24 Aligned_cols=147 Identities=16% Similarity=0.220 Sum_probs=90.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|...|..+|+.+=........+ ....+..+ +..++++..|+.+..+|
T Consensus 267 D~tvriWd~~~~~~~~~l~~hs~~i---------------------------s~~~f~~d---~~~l~s~s~d~~i~vwd 316 (456)
T KOG0266|consen 267 DGTVRIWDVRTGECVRKLKGHSDGI---------------------------SGLAFSPD---GNLLVSASYDGTIRVWD 316 (456)
T ss_pred CCcEEEEeccCCeEEEeeeccCCce---------------------------EEEEECCC---CCEEEEcCCCccEEEEE
Confidence 4899999999999888776654311 11122222 47788888999999999
Q ss_pred CCCCCee--eeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 222 RDSGSLI--WSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 222 ~~tG~~~--W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
..+|+.+ -...... ... ....... ++..++.. ..++.+..+|+..++..=.+....
T Consensus 317 ~~~~~~~~~~~~~~~~--~~~-~~~~~~fsp~~~~ll~~-----------------~~d~~~~~w~l~~~~~~~~~~~~~ 376 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAE--NSA-PVTSVQFSPNGKYLLSA-----------------SLDRTLKLWDLRSGKSVGTYTGHS 376 (456)
T ss_pred CCCCceeeeecccCCC--CCC-ceeEEEECCCCcEEEEe-----------------cCCCeEEEEEccCCcceeeecccC
Confidence 9999965 2211111 010 1111111 44555554 344678888998887766655433
Q ss_pred CC--CCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 298 NG--TAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 298 ~~--~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
.. -...+.... +..++.+. .++.|+.+|..++.++-+.+..
T Consensus 377 ~~~~~~~~~~~~~~~~~i~sg~--~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 377 NLVRCIFSPTLSTGGKLIYSGS--EDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred CcceeEecccccCCCCeEEEEe--CCceEEEEeCCccchhhhhcCC
Confidence 21 112222233 34566666 5999999999999888877655
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=1 Score=44.67 Aligned_cols=177 Identities=12% Similarity=0.118 Sum_probs=90.0
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc--cCcEEEEE
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ--KSGFAWAL 220 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~--~~g~l~al 220 (382)
..|+.+|..+|+..--....... ..| ...++| ..+++... .+..++.+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~-------------------------~~~---~~SPDG--~~la~~~~~~g~~~Iy~~ 262 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGML-------------------------VVS---DVSKDG--SKLLLTMAPKGQPDIYLY 262 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcE-------------------------Eee---EECCCC--CEEEEEEccCCCcEEEEE
Confidence 58999999998765433322110 111 123344 33444433 34689999
Q ss_pred eCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC
Q 040693 221 DRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT 300 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~ 300 (382)
|.++|+.. .....+. ......|.+ |+..|++.... .....|+.+|+.+|+..-.+....
T Consensus 263 dl~~g~~~-~LT~~~~-~d~~p~~SP--DG~~I~F~Sdr--------------~g~~~Iy~~dl~~g~~~rlt~~g~--- 321 (419)
T PRK04043 263 DTNTKTLT-QITNYPG-IDVNGNFVE--DDKRIVFVSDR--------------LGYPNIFMKKLNSGSVEQVVFHGK--- 321 (419)
T ss_pred ECCCCcEE-EcccCCC-ccCccEECC--CCCEEEEEECC--------------CCCceEEEEECCCCCeEeCccCCC---
Confidence 99888633 2221111 111223333 67777776543 122469999999998732222111
Q ss_pred CCcceEEeCCE-EEEeeecC-----C-CcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCCccC
Q 040693 301 APGPVTVANGV-LFGGSTYR-----Q-GPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 301 ~~~~~~~~~~~-v~~~~~~~-----~-g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
......-+++. +|+..... . ..|+.+|+++|++. +.... .....|.. .+..|+..+..+....++.++.
T Consensus 322 ~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 322 NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 11222234554 44433210 1 47999999988742 22222 22334554 3455666655544445555555
Q ss_pred C
Q 040693 372 T 372 (382)
Q Consensus 372 ~ 372 (382)
.
T Consensus 400 ~ 400 (419)
T PRK04043 400 N 400 (419)
T ss_pred C
Confidence 3
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.23 Score=46.86 Aligned_cols=165 Identities=13% Similarity=0.183 Sum_probs=92.0
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|-|.|+..-|++-.+.-.-...+ | +.--|. .++|+.++.|..+...|
T Consensus 214 dk~VKCwDLe~nkvIR~YhGHlS~V~-----------~---------L~lhPT----------ldvl~t~grDst~RvWD 263 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYHGHLSGVY-----------C---------LDLHPT----------LDVLVTGGRDSTIRVWD 263 (460)
T ss_pred CCeeEEEechhhhhHHHhccccceeE-----------E---------Eecccc----------ceeEEecCCcceEEEee
Confidence 48999999998888766643311111 0 111222 36788888899899888
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
..|-...-...--. ........ .+..||.+ ..+++|...|.+.|+..-...-...
T Consensus 264 iRtr~~V~~l~GH~-----~~V~~V~~~~~dpqvit~-----------------S~D~tvrlWDl~agkt~~tlt~hkk- 320 (460)
T KOG0285|consen 264 IRTRASVHVLSGHT-----NPVASVMCQPTDPQVITG-----------------SHDSTVRLWDLRAGKTMITLTHHKK- 320 (460)
T ss_pred ecccceEEEecCCC-----CcceeEEeecCCCceEEe-----------------cCCceEEEeeeccCceeEeeecccc-
Confidence 88765554443110 01111112 36777776 5678899999999987766543321
Q ss_pred CCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEE-EeCcee
Q 040693 300 TAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYM-GNGYKV 362 (382)
Q Consensus 300 ~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv-~~~~g~ 362 (382)
....+.. .....|+... ...+-+.+.-.|+.+-.+..-.++..+..+..+.+|+ +..+|.
T Consensus 321 -svral~lhP~e~~fASas--~dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v~~~G~dng~ 382 (460)
T KOG0285|consen 321 -SVRALCLHPKENLFASAS--PDNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGVLVSGGDNGS 382 (460)
T ss_pred -eeeEEecCCchhhhhccC--CccceeccCCccchhhccccccceeeeeeeccCceEEEcCCceE
Confidence 1112111 1124555442 5667777776677666533333455566554444444 444443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.45 Score=51.26 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=82.9
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
...|+++..|+.+..+|..+++.+..+..-. ...+.... ++..++.+ ..++.|..
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~-----~~V~~l~~~p~~~~~L~Sg-----------------s~Dg~v~i 602 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHE-----KRVWSIDYSSADPTLLASG-----------------SDDGSVKL 602 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCC-----CCEEEEEEcCCCCCEEEEE-----------------cCCCEEEE
Confidence 4578888889999999999998887775321 12333333 23344444 34588999
Q ss_pred EECCCCcEEeeecCCCCCCCCcceEE--e-CCEEEEeeecCCCcEEEEeCCCCcE-eEEEecCCceecceEEeCCEEEEE
Q 040693 282 MDASNGNVLWSTADPSNGTAPGPVTV--A-NGVLFGGSTYRQGPIYAMDVKTGKI-LWSYDTGATIYGGASVSNGCIYMG 357 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~~~~~~~~~~~~--~-~~~v~~~~~~~~g~l~~ld~~tG~i-lw~~~~~~~~~~~p~~~~g~lyv~ 357 (382)
+|..+++..-....... ...+.+ . +..+..++ .++.|+.+|..+++. +-...............++..+++
T Consensus 603 Wd~~~~~~~~~~~~~~~---v~~v~~~~~~g~~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs 677 (793)
T PLN00181 603 WSINQGVSIGTIKTKAN---ICCVQFPSESGRSLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVS 677 (793)
T ss_pred EECCCCcEEEEEecCCC---eEEEEEeCCCCCEEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEE
Confidence 99999987766554321 112222 2 34555555 489999999987763 333322122222333345555555
Q ss_pred eCceeEeecCCccC
Q 040693 358 NGYKVTVGFGNKNF 371 (382)
Q Consensus 358 ~~~g~~~~~~~~~~ 371 (382)
.+....+.+|.+..
T Consensus 678 ~s~D~~ikiWd~~~ 691 (793)
T PLN00181 678 SSTDNTLKLWDLSM 691 (793)
T ss_pred EECCCEEEEEeCCC
Confidence 44445577777653
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.058 Score=52.20 Aligned_cols=51 Identities=24% Similarity=0.250 Sum_probs=39.3
Q ss_pred CCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCC
Q 040693 274 TIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVK 329 (382)
Q Consensus 274 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~ 329 (382)
..+..+.++|+..|+++=++.++.. -..+++ .+.++|+++. +|.|+.++..
T Consensus 195 S~D~t~k~wdlS~g~LLlti~fp~s---i~av~lDpae~~~yiGt~--~G~I~~~~~~ 247 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLLTITFPSS---IKAVALDPAERVVYIGTE--EGKIFQNLLF 247 (476)
T ss_pred cCCceEEEEEeccceeeEEEecCCc---ceeEEEcccccEEEecCC--cceEEeeehh
Confidence 4568899999999999999988763 233334 3568999995 9999988765
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.12 Score=47.91 Aligned_cols=150 Identities=12% Similarity=0.112 Sum_probs=95.4
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+..|+.++.|-.+..--.++||.+-+++--.... .......++..+... ..+|+|..++.
T Consensus 318 ~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv---n~a~ft~dG~~iisa-----------------SsDgtvkvW~~ 377 (508)
T KOG0275|consen 318 NSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV---NEATFTDDGHHIISA-----------------SSDGTVKVWHG 377 (508)
T ss_pred cchhhcccccceEEEeccccchhHHHhcCccccc---cceEEcCCCCeEEEe-----------------cCCccEEEecC
Confidence 4677888888888888888999998887321100 001111144545444 45688999999
Q ss_pred CCCcEEeeecCCCCCCC-CcceEEe-CC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCC----ceecceE-EeCCEEEE
Q 040693 285 SNGNVLWSTADPSNGTA-PGPVTVA-NG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGA----TIYGGAS-VSNGCIYM 356 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~-~~~~~~~-~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~----~~~~~p~-~~~g~lyv 356 (382)
+|++-+-++........ .+.+.+. +. -.+++. +...+|.++.. |.++-.+.-+. .+....+ ..+.-+|+
T Consensus 378 KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN--rsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 378 KTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN--RSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYC 454 (508)
T ss_pred cchhhhhhccCCCCcccceeEEEcCCCCceEEEEc--CCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEE
Confidence 99988877765543222 2222222 32 233333 47899999976 88888875542 3333333 36778888
Q ss_pred EeCceeEeecCCccCCCCCeEEEE
Q 040693 357 GNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 357 ~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
...+++ +|+|+..+|++--..
T Consensus 455 igED~v---lYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 455 IGEDGV---LYCFSVLSGKLERTL 475 (508)
T ss_pred EccCcE---EEEEEeecCceeeee
Confidence 888877 799999999876543
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.19 Score=45.12 Aligned_cols=125 Identities=12% Similarity=0.194 Sum_probs=78.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc--eee--eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG--AAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~--~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
.+.|+.+.+|+.+|++|.++|++.-.++-- .++. .+. ..+.|+.+ ..+|++.
T Consensus 126 enSi~~AgGD~~~y~~dlE~G~i~r~~rGH-------tDYvH~vv~R~~~~qilsG-----------------~EDGtvR 181 (325)
T KOG0649|consen 126 ENSILFAGGDGVIYQVDLEDGRIQREYRGH-------TDYVHSVVGRNANGQILSG-----------------AEDGTVR 181 (325)
T ss_pred CCcEEEecCCeEEEEEEecCCEEEEEEcCC-------cceeeeeeecccCcceeec-----------------CCCccEE
Confidence 455666668999999999999999888732 2222 111 34555554 4569999
Q ss_pred EEECCCCcEEeeecCCCC--------CCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCC
Q 040693 281 AMDASNGNVLWSTADPSN--------GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNG 352 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g 352 (382)
..|.+|+|-.=.+..... ..+-+.+..+.+.++++. .-.+..+++.+-+..-.+++++... ....+++
T Consensus 182 vWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg---Gp~lslwhLrsse~t~vfpipa~v~-~v~F~~d 257 (325)
T KOG0649|consen 182 VWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG---GPKLSLWHLRSSESTCVFPIPARVH-LVDFVDD 257 (325)
T ss_pred EEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC---CCceeEEeccCCCceEEEeccccee-Eeeeecc
Confidence 999999998777654331 112244444455565554 4556666777677777777765322 2333555
Q ss_pred EEEEE
Q 040693 353 CIYMG 357 (382)
Q Consensus 353 ~lyv~ 357 (382)
.+.++
T Consensus 258 ~vl~~ 262 (325)
T KOG0649|consen 258 CVLIG 262 (325)
T ss_pred eEEEe
Confidence 55554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.071 Score=51.00 Aligned_cols=225 Identities=13% Similarity=0.054 Sum_probs=122.6
Q ss_pred ccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCC
Q 040693 47 FELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQ 126 (382)
Q Consensus 47 ~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 126 (382)
+...|.++-.+..+|+.||+.+=.+.-+-... .++.+-.+++..++.+..
T Consensus 283 yLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S------------~~sc~W~pDg~~~V~Gs~------------------ 332 (519)
T KOG0293|consen 283 YLLACGFDEVLSLWDVDTGDLRHLYPSGLGFS------------VSSCAWCPDGFRFVTGSP------------------ 332 (519)
T ss_pred eEEecCchHheeeccCCcchhhhhcccCcCCC------------cceeEEccCCceeEecCC------------------
Confidence 34556667778888999998877765431100 124455556555555432
Q ss_pred CCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEee--eCcee
Q 040693 127 TTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMY--RNKVK 204 (382)
Q Consensus 127 ~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~g~~ 204 (382)
+..+++.|. +|+++-..+.. ..|.+.++. .||
T Consensus 333 ---------------dr~i~~wdl-Dgn~~~~W~gv----------------------------r~~~v~dlait~Dg-- 366 (519)
T KOG0293|consen 333 ---------------DRTIIMWDL-DGNILGNWEGV----------------------------RDPKVHDLAITYDG-- 366 (519)
T ss_pred ---------------CCcEEEecC-Ccchhhccccc----------------------------ccceeEEEEEcCCC--
Confidence 488999997 58885333222 235566543 333
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
..++..+.|..+..++.++-..+=..+...+ -......-++..+.+. .....++..|.
T Consensus 367 -k~vl~v~~d~~i~l~~~e~~~dr~lise~~~----its~~iS~d~k~~Lvn-----------------L~~qei~LWDl 424 (519)
T KOG0293|consen 367 -KYVLLVTVDKKIRLYNREARVDRGLISEEQP----ITSFSISKDGKLALVN-----------------LQDQEIHLWDL 424 (519)
T ss_pred -cEEEEEecccceeeechhhhhhhccccccCc----eeEEEEcCCCcEEEEE-----------------cccCeeEEeec
Confidence 4555555677788888776433322222111 0111111144445554 33466888887
Q ss_pred CCCcEEeeecCCCC-CCCCcceEEeC-CEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceE--EeCCEEEEEeCc
Q 040693 285 SNGNVLWSTADPSN-GTAPGPVTVAN-GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS--VSNGCIYMGNGY 360 (382)
Q Consensus 285 ~tG~~~W~~~~~~~-~~~~~~~~~~~-~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~--~~~g~lyv~~~~ 360 (382)
+.-++.-++..... .+.-... +.+ +--|+++..++++||..+..+|+++-...-........+ ..+-++|.+.++
T Consensus 425 ~e~~lv~kY~Ghkq~~fiIrSC-Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasD 503 (519)
T KOG0293|consen 425 EENKLVRKYFGHKQGHFIIRSC-FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASD 503 (519)
T ss_pred chhhHHHHhhcccccceEEEec-cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCC
Confidence 75555444443321 1111111 222 224555444699999999999999987643222111111 156777887777
Q ss_pred eeEeecCCcc
Q 040693 361 KVTVGFGNKN 370 (382)
Q Consensus 361 g~~~~~~~~~ 370 (382)
...+.++...
T Consensus 504 DgtIRIWg~~ 513 (519)
T KOG0293|consen 504 DGTIRIWGPS 513 (519)
T ss_pred CCeEEEecCC
Confidence 7766666544
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.83 Score=42.35 Aligned_cols=73 Identities=14% Similarity=0.189 Sum_probs=52.2
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCC--CCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGL--GGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~--~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..|+..+..+.++.+|+=+|.++-.++..+... .....+.| |+..|+.+ ..+|+|+++
T Consensus 199 GK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP--ds~Fvl~g-----------------s~dg~i~vw 259 (311)
T KOG1446|consen 199 GKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP--DSKFVLSG-----------------SDDGTIHVW 259 (311)
T ss_pred CCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC--CCcEEEEe-----------------cCCCcEEEE
Confidence 3678888889999999999999888887554211 11111222 66666666 456999999
Q ss_pred ECCCCcEEeeecCC
Q 040693 283 DASNGNVLWSTADP 296 (382)
Q Consensus 283 d~~tG~~~W~~~~~ 296 (382)
++++|+++-+...+
T Consensus 260 ~~~tg~~v~~~~~~ 273 (311)
T KOG1446|consen 260 NLETGKKVAVLRGP 273 (311)
T ss_pred EcCCCcEeeEecCC
Confidence 99999987776654
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.3 Score=44.09 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=56.6
Q ss_pred cEEEEEccCc--EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSG--FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g--~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+++.....+ .++.+|..+|+..--...+. ......|.+ ++..|++...+ .....|..+|
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~--~~~~~~~Sp--DG~~Ia~~~~~--------------~~~~~I~v~d 366 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGGSAERLTFQGN--YNARASVSP--DGKKIAMVHGS--------------GGQYRIAVMD 366 (433)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEEeecCCC--CccCEEECC--CCCEEEEEECC--------------CCceeEEEEE
Confidence 3444443333 59999988886532211110 111122222 66666665322 1123689999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEeC-CEEEEeee-cCCCcEEEEeCCCCcEeEEEecC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVAN-GVLFGGST-YRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~~-~~v~~~~~-~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
+.+|+..--.... ....+....+ ..++..+. .....|+.+|.+ |+...+...+
T Consensus 367 ~~~g~~~~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~~~ 421 (433)
T PRK04922 367 LSTGSVRTLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTD-GRVRQRLVSA 421 (433)
T ss_pred CCCCCeEECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEcccC
Confidence 9999876322211 1122332333 44444442 123569999985 6666655543
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.91 Score=41.55 Aligned_cols=112 Identities=12% Similarity=0.069 Sum_probs=72.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+.+|+.++.|..+...|..+-+++-.+.-- .+........-++.+-++. ..+|.++..|+
T Consensus 162 ~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh----~~~v~t~~vSpDGslcasG----------------gkdg~~~LwdL 221 (315)
T KOG0279|consen 162 NPIIVSASWDKTVKVWNLRNCQLRTTFIGH----SGYVNTVTVSPDGSLCASG----------------GKDGEAMLWDL 221 (315)
T ss_pred CcEEEEccCCceEEEEccCCcchhhccccc----cccEEEEEECCCCCEEecC----------------CCCceEEEEEc
Confidence 566778888999999999887766555421 1112233333455555542 34688999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
..||-+...+... ....+.+. +.+..++.. ...|..+|.++++++..+++..
T Consensus 222 ~~~k~lysl~a~~---~v~sl~fspnrywL~~at--~~sIkIwdl~~~~~v~~l~~d~ 274 (315)
T KOG0279|consen 222 NEGKNLYSLEAFD---IVNSLCFSPNRYWLCAAT--ATSIKIWDLESKAVVEELKLDG 274 (315)
T ss_pred cCCceeEeccCCC---eEeeEEecCCceeEeecc--CCceEEEeccchhhhhhccccc
Confidence 9999976666432 12233344 445555543 6678889999999988876653
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=2.1 Score=43.80 Aligned_cols=106 Identities=13% Similarity=0.076 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..+..+|+.+. .|+.-.+.+. .......+..++.+|+..+...... . .....+..+|++++ .|+.-
T Consensus 406 ~~v~~yd~~t~--~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~----~----~~~~~v~~yd~~~~--~W~~~ 471 (534)
T PHA03098 406 KTVECFSLNTN--KWSKGSPLPI--SHYGGCAIYHDGKIYVIGGISYIDN----I----KVYNIVESYNPVTN--KWTEL 471 (534)
T ss_pred ceEEEEeCCCC--eeeecCCCCc--cccCceEEEECCEEEEECCccCCCC----C----cccceEEEecCCCC--ceeeC
Confidence 35888998764 5876433211 1112223446788888644311000 0 01234899999875 57653
Q ss_pred C--CCCCCCCcceEEeCCEEEEeeecC----CCcEEEEeCCCCcEeEEE
Q 040693 295 D--PSNGTAPGPVTVANGVLFGGSTYR----QGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 295 ~--~~~~~~~~~~~~~~~~v~~~~~~~----~g~l~~ld~~tG~ilw~~ 337 (382)
. +.+. ........++.+|+..... ...++++|+++. .|+.
T Consensus 472 ~~~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~ 517 (534)
T PHA03098 472 SSLNFPR-INASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTN--TWTL 517 (534)
T ss_pred CCCCccc-ccceEEEECCEEEEEcCCcCCcccceeEEEeCCCC--EEEe
Confidence 2 2222 2233334467777654211 246889998855 4764
|
|
| >PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.3 Score=41.02 Aligned_cols=194 Identities=16% Similarity=0.167 Sum_probs=112.9
Q ss_pred ceEEEEECCCCcEEEEEecCCCc---------------ccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecE
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYD---------------VWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDI 207 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~ 207 (382)
+.-.-+|.++++.+.+++..+.. ...|++ ++--.|.++.-..++ +..
T Consensus 9 aeahfi~~~d~~~iY~felvG~~P~SGGDTYNAV~~vDd~IyFG----------------GWVHAPa~y~gk~~g--~~~ 70 (339)
T PF09910_consen 9 AEAHFIDRDDSEKIYRFELVGPPPTSGGDTYNAVEWVDDFIYFG----------------GWVHAPAVYEGKGDG--RAT 70 (339)
T ss_pred eeeEEEecCCceEEEEeeeccCCCCCCCccceeeeeecceEEEe----------------eeecCCceeeeccCC--ceE
Confidence 45556778889999999865431 111211 222355555443333 344
Q ss_pred EEEEccCcEEEEEeCCCCC--eeeeeccCCCCCCCCcccceee-------eCCeEEEEecCccccccccCCCCCCCCCce
Q 040693 208 VVAVQKSGFAWALDRDSGS--LIWSMEAGPGGLGGGAMWGAAT-------DERRIYTNIANSQHKNFNLKPSKNSTIAGG 278 (382)
Q Consensus 208 v~~~~~~g~l~ald~~tG~--~~W~~~~~~~~~~g~~~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (382)
|-+..+-+.++.+|.++++ ++|+.....+ ..|...+ .++.|+++..++. ..=.
T Consensus 71 IdF~NKYSHVH~yd~e~~~VrLLWkesih~~-----~~WaGEVSdIlYdP~~D~LLlAR~DGh-------------~nLG 132 (339)
T PF09910_consen 71 IDFRNKYSHVHEYDTENDSVRLLWKESIHDK-----TKWAGEVSDILYDPYEDRLLLARADGH-------------ANLG 132 (339)
T ss_pred EEEeeccceEEEEEcCCCeEEEEEecccCCc-----cccccchhheeeCCCcCEEEEEecCCc-------------ceee
Confidence 5555556789999999886 6799875432 4444332 3566777644311 1123
Q ss_pred EEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeee---cCCCcEEEEeCCCCcEeEEE-ecCCc---------eec
Q 040693 279 WVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGST---YRQGPIYAMDVKTGKILWSY-DTGAT---------IYG 345 (382)
Q Consensus 279 v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~g~l~~ld~~tG~ilw~~-~~~~~---------~~~ 345 (382)
|+.+|.++|+.++-.+.+.. -+.+ +. +.++.... .....|+|+|+.+||.+.+. +.+.. ..+
T Consensus 133 vy~ldr~~g~~~~L~~~ps~---KG~~-~~-D~a~F~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G 207 (339)
T PF09910_consen 133 VYSLDRRTGKAEKLSSNPSL---KGTL-VH-DYACFGINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELG 207 (339)
T ss_pred eEEEcccCCceeeccCCCCc---CceE-ee-eeEEEeccccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccc
Confidence 99999999999998887652 2222 22 33333322 12457999999999874322 22211 113
Q ss_pred ceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 346 GASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 346 ~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
..+-..+|+|.....|. +..|+..++..--|+
T Consensus 208 ~~~s~ynR~faF~rGGi----~vgnP~~~e~~~f~R 239 (339)
T PF09910_consen 208 AMASAYNRLFAFVRGGI----FVGNPYNGEEFRFYR 239 (339)
T ss_pred cEEEEeeeEEEEEeccE----EEeCCCCCCceeEEE
Confidence 33446788888766544 447887777654444
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.8 Score=42.56 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=84.2
Q ss_pred EEEEEccCc-EEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 207 IVVAVQKSG-FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 207 ~v~~~~~~g-~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
.++.++++| .+-.+|..+|++.-.... .|.....-.. ++..+.++ .....++.+|+
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e~~-----lg~I~av~vs~dGK~~vva-----------------Ndr~el~vidi 430 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIEKD-----LGNIEAVKVSPDGKKVVVA-----------------NDRFELWVIDI 430 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEeeCC-----ccceEEEEEcCCCcEEEEE-----------------cCceEEEEEEe
Confidence 566788888 899999999884433321 1222222222 44556665 33477999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEeCCEEEEeee---cCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeC
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVANGVLFGGST---YRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNG 359 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~ 359 (382)
.||++.=.-..... .........+.+.++=+. .....|..+|..+||+. ...++.+.-.+|+. .+..||..+.
T Consensus 431 dngnv~~idkS~~~-lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy-~vTT~ta~DfsPaFD~d~ryLYfLs~ 508 (668)
T COG4946 431 DNGNVRLIDKSEYG-LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY-DVTTPTAYDFSPAFDPDGRYLYFLSA 508 (668)
T ss_pred cCCCeeEecccccc-eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE-EecCCcccccCcccCCCCcEEEEEec
Confidence 99987633222211 111111223443333221 12456888999877754 45566666667776 5667777755
Q ss_pred ceeEeecCCccCCCCCeEEEEE
Q 040693 360 YKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 360 ~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
. . +|+.+-+..+.|.
T Consensus 509 R-s------LdPs~Drv~fnf~ 523 (668)
T COG4946 509 R-S------LDPSNDRVIFNFS 523 (668)
T ss_pred c-c------cCCCCCeeEEEEE
Confidence 3 3 7888877777764
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.42 Score=46.45 Aligned_cols=133 Identities=16% Similarity=0.141 Sum_probs=82.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+..++.++-.|.+|++...||+++-.+.. .......... +++..+++.+ .+|.|+++.
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~v~~a-----HYQ~ITcL~fs~dgs~iiTgs----------------kDg~V~vW~ 151 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLNVLSA-----HYQSITCLKFSDDGSHIITGS----------------KDGAVLVWL 151 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHHHHHh-----hccceeEEEEeCCCcEEEecC----------------CCccEEEEE
Confidence 45666777899999999999998866541 1112222222 5566665533 345555544
Q ss_pred CC---------CCcEEeeecCCCCCCCCcceEEe----CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-
Q 040693 284 AS---------NGNVLWSTADPSNGTAPGPVTVA----NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV- 349 (382)
Q Consensus 284 ~~---------tG~~~W~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~- 349 (382)
+. +=+++.......-. ..-+.+. +.++|.++. +..+.+.|...|+++-++-.+.... +.++
T Consensus 152 l~~lv~a~~~~~~~p~~~f~~Htls--ITDl~ig~Gg~~~rl~TaS~--D~t~k~wdlS~g~LLlti~fp~si~-av~lD 226 (476)
T KOG0646|consen 152 LTDLVSADNDHSVKPLHIFSDHTLS--ITDLQIGSGGTNARLYTASE--DRTIKLWDLSLGVLLLTITFPSSIK-AVALD 226 (476)
T ss_pred EEeecccccCCCccceeeeccCcce--eEEEEecCCCccceEEEecC--CceEEEEEeccceeeEEEecCCcce-eEEEc
Confidence 33 22334333332211 1111121 358888874 8889999999999999988776443 3333
Q ss_pred -eCCEEEEEeCceeE
Q 040693 350 -SNGCIYMGNGYKVT 363 (382)
Q Consensus 350 -~~g~lyv~~~~g~~ 363 (382)
.+-++|++++.|.+
T Consensus 227 pae~~~yiGt~~G~I 241 (476)
T KOG0646|consen 227 PAERVVYIGTEEGKI 241 (476)
T ss_pred ccccEEEecCCcceE
Confidence 78999999999985
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.8 Score=42.38 Aligned_cols=101 Identities=16% Similarity=0.104 Sum_probs=50.9
Q ss_pred EEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 216 FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 216 ~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
.++.+|..+++..- .... +.....+.. ++..+++.... .....|+.+|+.+++..-..
T Consensus 303 ~iy~~d~~~~~~~~-l~~~-----~~~~~~~~~spdg~~i~~~~~~--------------~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 303 QIYMMDADGGEVRR-LTFR-----GGYNASPSWSPDGDLIAFVHRE--------------GGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred eEEEEECCCCCEEE-eecC-----CCCccCeEECCCCCEEEEEEcc--------------CCceEEEEEeCCCCCeEEcc
Confidence 79999998877432 2211 111222222 55666665322 11247999999987654332
Q ss_pred cCCCCCCCCcceEE-eCCEEEEeeecCC-CcEEEEeCCCCcEeEEEecC
Q 040693 294 ADPSNGTAPGPVTV-ANGVLFGGSTYRQ-GPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 294 ~~~~~~~~~~~~~~-~~~~v~~~~~~~~-g~l~~ld~~tG~ilw~~~~~ 340 (382)
... ....+... +++.+++...... ..++.++ .+|+...+...+
T Consensus 363 ~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~-~~g~~~~~~~~~ 407 (417)
T TIGR02800 363 DTG---LDESPSFAPNGRMILYATTRGGRGVLGLVS-TDGRFRARLPLG 407 (417)
T ss_pred CCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEE-CCCceeeECCCC
Confidence 211 11222222 4555655554112 2355444 568877776654
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.5 Score=43.89 Aligned_cols=143 Identities=15% Similarity=0.196 Sum_probs=83.7
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..|+.+..|+.++..|..+|+..-....-.. ....... ++..+..+ ..++.+..+
T Consensus 258 g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-----~is~~~f~~d~~~l~s~-----------------s~d~~i~vw 315 (456)
T KOG0266|consen 258 GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-----GISGLAFSPDGNLLVSA-----------------SYDGTIRVW 315 (456)
T ss_pred CCEEEEecCCCcEEEEeccCCeEEEeeeccCC-----ceEEEEECCCCCEEEEc-----------------CCCccEEEE
Confidence 37889999999999999999998887774321 1222122 44545444 346899999
Q ss_pred ECCCCcEE--eeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC----ceecceEEeCCEE
Q 040693 283 DASNGNVL--WSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA----TIYGGASVSNGCI 354 (382)
Q Consensus 283 d~~tG~~~--W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~----~~~~~p~~~~g~l 354 (382)
|..+|+.+ -.............+.+ .+.+++.+. .++.+...|...++.+-.+.... .++......+++.
T Consensus 316 d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~--~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (456)
T KOG0266|consen 316 DLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS--LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKL 393 (456)
T ss_pred ECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEec--CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCe
Confidence 99999954 22221111101122222 235666666 37788888988887765554322 1222222445666
Q ss_pred EEEeCceeEeecCCccC
Q 040693 355 YMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 355 yv~~~~g~~~~~~~~~~ 371 (382)
.++.+....+.++....
T Consensus 394 i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSSS 410 (456)
T ss_pred EEEEeCCceEEEEeCCc
Confidence 66555445455555443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.3 Score=45.44 Aligned_cols=185 Identities=10% Similarity=0.026 Sum_probs=99.8
Q ss_pred CCCCCCCCCCC--CCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCcee
Q 040693 127 TTPTSPDKCIE--PENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVK 204 (382)
Q Consensus 127 ~~~~~~~~~~~--~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 204 (382)
..|...+|+.. ...+.+.+.+||++|-++.|+....... -......+
T Consensus 197 ~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnp----------------------------d~v~~spd--- 245 (635)
T PRK02888 197 RIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNL----------------------------DNVDTDYD--- 245 (635)
T ss_pred ccccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCc----------------------------ccceECCC---
Confidence 34444455432 2456789999999999999999886531 11111111
Q ss_pred ecEEEEEccC----cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVAVQKS----GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~~~~~----g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
+..+++..++ ..+..++..+-..+..++... .....-+++..++. +++|.
T Consensus 246 Gk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~-------iea~vkdGK~~~V~-------------------gn~V~ 299 (635)
T PRK02888 246 GKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR-------IEEAVKAGKFKTIG-------------------GSKVP 299 (635)
T ss_pred CCEEEEeccCcccCcceeeeccccCceEEEEchHH-------HHHhhhCCCEEEEC-------------------CCEEE
Confidence 3444444321 234444443333222222110 00111144555552 36799
Q ss_pred EEECCC----C-cEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcE------------eEEEecCCce
Q 040693 281 AMDASN----G-NVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKI------------LWSYDTGATI 343 (382)
Q Consensus 281 a~d~~t----G-~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~i------------lw~~~~~~~~ 343 (382)
.+|.++ + +.+-.++.+.. ...-.+.-++.++|++.. .+..+.+||.++-+. .-+.+++-+=
T Consensus 300 VID~~t~~~~~~~v~~yIPVGKs-PHGV~vSPDGkylyVank-lS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP 377 (635)
T PRK02888 300 VVDGRKAANAGSALTRYVPVPKN-PHGVNTSPDGKYFIANGK-LSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP 377 (635)
T ss_pred EEECCccccCCcceEEEEECCCC-ccceEECCCCCEEEEeCC-CCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc
Confidence 999999 4 67777787773 345555445677887763 578899999988664 3343332211
Q ss_pred ecceEE-eCCEEEEEeCceeEeecCCccC
Q 040693 344 YGGASV-SNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 344 ~~~p~~-~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
. +..+ .+|..|++-.-..++..|+++.
T Consensus 378 L-HTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 378 L-HTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-eEEECCCCCEEEeEeecceeEEEehHH
Confidence 1 1111 3456777655444455555443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=1.3 Score=40.07 Aligned_cols=143 Identities=11% Similarity=0.024 Sum_probs=80.8
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc-eeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG-AATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+.-+|.++.||.+...|...-...-.++.+.+ .... +--....++++ +++|.|...|
T Consensus 95 grWMyTgseDgt~kIWdlR~~~~qR~~~~~sp-----Vn~vvlhpnQteLis~-----------------dqsg~irvWD 152 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSP-----VNTVVLHPNQTELISG-----------------DQSGNIRVWD 152 (311)
T ss_pred CeEEEecCCCceEEEEeccCcccchhccCCCC-----cceEEecCCcceEEee-----------------cCCCcEEEEE
Confidence 35688888899888888776444444443321 1111 11133445555 6789999999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCC------cEeEEEecCCceecc-eEEeCCEE
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTG------KILWSYDTGATIYGG-ASVSNGCI 354 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG------~ilw~~~~~~~~~~~-p~~~~g~l 354 (382)
+.+-.-.-+ .+|........+.+ ++.++.++.. .|..|+.+.-++ +++-+++...+..-. ...-+++.
T Consensus 153 l~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a~nn--kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 153 LGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAAANN--KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred ccCCccccc-cCCCCCcceeeEEEcCCCcEEEEecC--CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcE
Confidence 975522211 12222222223333 4556666664 899999988754 334444444443333 33356676
Q ss_pred EEEeCceeEeecCCccCC
Q 040693 355 YMGNGYKVTVGFGNKNFT 372 (382)
Q Consensus 355 yv~~~~g~~~~~~~~~~~ 372 (382)
.++.+....+++++.+.-
T Consensus 230 lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEeecCCceEEEEecCCc
Confidence 666666677888876653
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.076 Score=47.69 Aligned_cols=100 Identities=12% Similarity=0.095 Sum_probs=74.6
Q ss_pred CCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEE
Q 040693 275 IAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCI 354 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~l 354 (382)
.+++|...|.+||++.-+...+.. . .+.-+..++.++..+. .+.|...|+++-+++-.++++..+-+.-+--+..+
T Consensus 163 dd~tVRLWD~rTgt~v~sL~~~s~-V-tSlEvs~dG~ilTia~--gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~ 238 (334)
T KOG0278|consen 163 DDKTVRLWDHRTGTEVQSLEFNSP-V-TSLEVSQDGRILTIAY--GSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEF 238 (334)
T ss_pred cCCceEEEEeccCcEEEEEecCCC-C-cceeeccCCCEEEEec--CceeEEeccccccceeeccCccccccccccCCCce
Confidence 458899999999999999888763 1 2222234555555553 78899999999999999999987666555556677
Q ss_pred EEEeCceeEeecCCccCCCCCeEEEE
Q 040693 355 YMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 355 yv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
||+.+.. ...|.+|..||+.+-+|
T Consensus 239 fVaGged--~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 239 FVAGGED--FKVYKFDYNTGEEIGSY 262 (334)
T ss_pred EEecCcc--eEEEEEeccCCceeeec
Confidence 7765532 35688999999999876
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.059 Score=52.37 Aligned_cols=104 Identities=11% Similarity=0.056 Sum_probs=70.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeC-CeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDE-RRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+..++.++.|.++..+|.+||+.+-+++.+.. .....+. .++ +.++++ ..++.|..+|
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~--~~cvkf~--pd~~n~fl~G-----------------~sd~ki~~wD 328 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFHLDKV--PTCVKFH--PDNQNIFLVG-----------------GSDKKIRQWD 328 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEecCCC--ceeeecC--CCCCcEEEEe-----------------cCCCcEEEEe
Confidence 45678889999999999999999999987642 1111122 255 445554 4468899999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTG 331 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG 331 (382)
.++|+++-++....+.. ..-..++++.-|+.+. +++.+...+-..+
T Consensus 329 iRs~kvvqeYd~hLg~i-~~i~F~~~g~rFissS-Ddks~riWe~~~~ 374 (503)
T KOG0282|consen 329 IRSGKVVQEYDRHLGAI-LDITFVDEGRRFISSS-DDKSVRIWENRIP 374 (503)
T ss_pred ccchHHHHHHHhhhhhe-eeeEEccCCceEeeec-cCccEEEEEcCCC
Confidence 99999998887655322 2223356777777765 5666666665443
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=2.6 Score=43.55 Aligned_cols=236 Identities=15% Similarity=0.185 Sum_probs=127.7
Q ss_pred CCcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCcc-ccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIE-EGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
++|++++ .|..-.+- +......+-++.++.||+...... .. .-..+..+|+.+.+ |+. +.+-...
T Consensus 305 ~yd~~~~--~w~~~a~m-~~~r~~~~~~~~~~~lYv~GG~~~~~~--------~l~~ve~YD~~~~~--W~~-~a~M~~~ 370 (571)
T KOG4441|consen 305 CYDPKTN--EWSSLAPM-PSPRCRVGVAVLNGKLYVVGGYDSGSD--------RLSSVERYDPRTNQ--WTP-VAPMNTK 370 (571)
T ss_pred EecCCcC--cEeecCCC-CcccccccEEEECCEEEEEccccCCCc--------ccceEEEecCCCCc--eec-cCCccCc
Confidence 4677766 45443221 122235567788999999665331 11 13578999998888 997 3221111
Q ss_pred CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEE
Q 040693 80 KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~ 159 (382)
+ . ...+..-.+.||+..|.. ....-..+-++|+. +-.|+.
T Consensus 371 R----~-------~~~v~~l~g~iYavGG~d---------------------------g~~~l~svE~YDp~--~~~W~~ 410 (571)
T KOG4441|consen 371 R----S-------DFGVAVLDGKLYAVGGFD---------------------------GEKSLNSVECYDPV--TNKWTP 410 (571)
T ss_pred c----c-------cceeEEECCEEEEEeccc---------------------------cccccccEEEecCC--CCcccc
Confidence 1 1 122222346888877641 11223567888875 445765
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc-C------cEEEEEeCCCCCeeeeec
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK-S------GFAWALDRDSGSLIWSME 232 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~-~------g~l~ald~~tG~~~W~~~ 232 (382)
-.+-.. ++ ....+. +-++.||+..+ + ..+.++|+.|. .|+..
T Consensus 411 va~m~~-----------~r------------~~~gv~------~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~ 459 (571)
T KOG4441|consen 411 VAPMLT-----------RR------------SGHGVA------VLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLI 459 (571)
T ss_pred cCCCCc-----------ce------------eeeEEE------EECCEEEEEcCcCCCccccceEEEEcCCCC--ceeec
Confidence 332110 00 111111 11566665443 2 45888999864 67765
Q ss_pred cCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec--CCCCCCCCcceEEeCC
Q 040693 233 AGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA--DPSNGTAPGPVTVANG 310 (382)
Q Consensus 233 ~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~ 310 (382)
.+- .......+.++.++.||+..+..+. .....+-++|+++-+ |+.- ... .....-+.+.++
T Consensus 460 ~~M--~~~R~~~g~a~~~~~iYvvGG~~~~-----------~~~~~VE~ydp~~~~--W~~v~~m~~-~rs~~g~~~~~~ 523 (571)
T KOG4441|consen 460 APM--NTRRSGFGVAVLNGKIYVVGGFDGT-----------SALSSVERYDPETNQ--WTMVAPMTS-PRSAVGVVVLGG 523 (571)
T ss_pred CCc--ccccccceEEEECCEEEEECCccCC-----------CccceEEEEcCCCCc--eeEcccCcc-ccccccEEEECC
Confidence 432 1223444566688999998554220 122448899997654 5543 322 233444456678
Q ss_pred EEEEeeec----CCCcEEEEeCCCCcEeEEEec
Q 040693 311 VLFGGSTY----RQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 311 ~v~~~~~~----~~g~l~~ld~~tG~ilw~~~~ 339 (382)
.+|+.... .-..+-++|+.+.+ |+...
T Consensus 524 ~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~ 554 (571)
T KOG4441|consen 524 KLYAVGGFDGNNNLNTVECYDPETDT--WTEVT 554 (571)
T ss_pred EEEEEecccCccccceeEEcCCCCCc--eeeCC
Confidence 88876531 12357788887655 66543
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=2.3 Score=42.20 Aligned_cols=109 Identities=12% Similarity=0.068 Sum_probs=53.4
Q ss_pred EEEEEccC--cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 207 IVVAVQKS--GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 207 ~v~~~~~~--g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
++++.... -.++.+|.++|+..--.... .....+.. ++..+++.... .....|+.+
T Consensus 301 I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~------~~~~~~~~SpDG~~Ia~~~~~--------------~g~~~I~~~ 360 (429)
T PRK03629 301 LAYTSDQAGRPQVYKVNINGGAPQRITWEG------SQNQDADVSSDGKFMVMVSSN--------------GGQQHIAKQ 360 (429)
T ss_pred EEEEeCCCCCceEEEEECCCCCeEEeecCC------CCccCEEECCCCCEEEEEEcc--------------CCCceEEEE
Confidence 44444333 37899999888654221111 11112222 56666554322 122458889
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEeC-CEEEEeeec-CCCcEEEEeCCCCcEeEEEec
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVAN-GVLFGGSTY-RQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~~-~~v~~~~~~-~~g~l~~ld~~tG~ilw~~~~ 339 (382)
|+.+|+..--... . ....+....+ ..++..+.. ....|+.++. +|+...+...
T Consensus 361 dl~~g~~~~Lt~~-~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~ 415 (429)
T PRK03629 361 DLATGGVQVLTDT-F--LDETPSIAPNGTMVIYSSSQGMGSVLNLVST-DGRFKARLPA 415 (429)
T ss_pred ECCCCCeEEeCCC-C--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCCeEECcc
Confidence 9999975422221 1 1122332334 445555431 1224777787 4666665543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=2.3 Score=42.16 Aligned_cols=103 Identities=17% Similarity=0.243 Sum_probs=51.2
Q ss_pred EEEEEccCc--EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 207 IVVAVQKSG--FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 207 ~v~~~~~~g--~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+++....+| .++.+|.++++..- ...... ......|.+ ++..+++.... ...-.|+.++.
T Consensus 262 La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~-~~~~~~wSp--DG~~i~f~s~~--------------~g~~~I~~~~~ 323 (429)
T PRK01742 262 LAFASSKDGVLNIYVMGANGGTPSQ-LTSGAG-NNTEPSWSP--DGQSILFTSDR--------------SGSPQVYRMSA 323 (429)
T ss_pred EEEEEecCCcEEEEEEECCCCCeEe-eccCCC-CcCCEEECC--CCCEEEEEECC--------------CCCceEEEEEC
Confidence 344444444 58888988776432 221110 111122222 55555554321 11235777787
Q ss_pred CCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEe
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKIL 334 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~il 334 (382)
.+++.... .. . . ......-++..+++.. ...++.+|+.+|+..
T Consensus 324 ~~~~~~~l-~~-~-~-~~~~~SpDG~~ia~~~---~~~i~~~Dl~~g~~~ 366 (429)
T PRK01742 324 SGGGASLV-GG-R-G-YSAQISADGKTLVMIN---GDNVVKQDLTSGSTE 366 (429)
T ss_pred CCCCeEEe-cC-C-C-CCccCCCCCCEEEEEc---CCCEEEEECCCCCeE
Confidence 77765433 11 1 1 1222222455666655 356778999998754
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.4 Score=43.68 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=95.6
Q ss_pred CCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEE
Q 040693 139 ENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAW 218 (382)
Q Consensus 139 ~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ 218 (382)
...++.++.+|.+||+.+-++...... ..+...+...+| ..+++..+.|-...
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aH------------------------kGsIfalsWsPD---s~~~~T~SaDkt~K 260 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAH------------------------KGSIFALSWSPD---STQFLTVSADKTIK 260 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCc------------------------cccEEEEEECCC---CceEEEecCCceEE
Confidence 445799999999999999988743221 011111222223 35677777788899
Q ss_pred EEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCC
Q 040693 219 ALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN 298 (382)
Q Consensus 219 ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~ 298 (382)
..|..+.++.-++.++.. ...-..+-.+.++.|+.. ..+|.|--+++.+++++-.+.....
T Consensus 261 IWdVs~~slv~t~~~~~~--v~dqqvG~lWqkd~lItV-----------------Sl~G~in~ln~~d~~~~~~i~GHnK 321 (603)
T KOG0318|consen 261 IWDVSTNSLVSTWPMGST--VEDQQVGCLWQKDHLITV-----------------SLSGTINYLNPSDPSVLKVISGHNK 321 (603)
T ss_pred EEEeeccceEEEeecCCc--hhceEEEEEEeCCeEEEE-----------------EcCcEEEEecccCCChhheeccccc
Confidence 999999999988887653 111111222345555554 3568999999999998777765443
Q ss_pred CCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcE
Q 040693 299 GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 299 ~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
....-.+.-++..+|-++. +|.|.-.|..+|+-
T Consensus 322 ~ITaLtv~~d~~~i~Sgsy--DG~I~~W~~~~g~~ 354 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSY--DGHINSWDSGSGTS 354 (603)
T ss_pred ceeEEEEcCCCCEEEeecc--CceEEEEecCCccc
Confidence 2222233234568888886 99999999887753
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.9 Score=42.71 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=75.6
Q ss_pred ecEEEEEcc--CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQK--SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
..++++... ...|+.+|.++|+..--..... ......|.+ ++..+++.... .....|+.+
T Consensus 211 ~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g--~~~~~~~Sp--DG~~la~~~~~--------------~g~~~Iy~~ 272 (430)
T PRK00178 211 KRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG--LNGAPAWSP--DGSKLAFVLSK--------------DGNPEIYVM 272 (430)
T ss_pred CEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC--CcCCeEECC--CCCEEEEEEcc--------------CCCceEEEE
Confidence 334454433 3479999999887543222110 111122322 56666654322 112469999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeee-cCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEe
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGST-YRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGN 358 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~ 358 (382)
|+++|+..--..... ....+... ++..++..+. .....||.+|..+|++.- ....+.....|.+ .++.|++.+
T Consensus 273 d~~~~~~~~lt~~~~--~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~ 349 (430)
T PRK00178 273 DLASRQLSRVTNHPA--IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVH 349 (430)
T ss_pred ECCCCCeEEcccCCC--CcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEE
Confidence 999987643222221 12222222 3455555442 112469999998887532 2222223334443 455666665
Q ss_pred CceeEeecCCccCCCCCe
Q 040693 359 GYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 359 ~~g~~~~~~~~~~~~g~~ 376 (382)
..+....++.+|..+|+.
T Consensus 350 ~~~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 350 RQDGNFHVAAQDLQRGSV 367 (430)
T ss_pred ccCCceEEEEEECCCCCE
Confidence 433333455566666654
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.2 Score=48.29 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=92.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
++++..++-|..+...|.++|+..-.+..-. .......+ ....+.++. ..+++|...
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~-----k~Vq~l~wh~~~p~~LLsG----------------s~D~~V~l~ 314 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKPKSSITHHG-----KKVQTLEWHPYEPSVLLSG----------------SYDGTVALK 314 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCcceehhhcC-----CceeEEEecCCCceEEEec----------------cccceEEee
Confidence 6788888899999999999999887776321 12222211 233333321 556888888
Q ss_pred ECC---CCcEEeeecCCCCCCCCcceEEe---CCEEEEeeecCCCcEEEEeCCC-CcEeEEEecCCceecceEE---eCC
Q 040693 283 DAS---NGNVLWSTADPSNGTAPGPVTVA---NGVLFGGSTYRQGPIYAMDVKT-GKILWSYDTGATIYGGASV---SNG 352 (382)
Q Consensus 283 d~~---tG~~~W~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~g~l~~ld~~t-G~ilw~~~~~~~~~~~p~~---~~g 352 (382)
|.+ .--..|++...-. .++.. ....++++ ++|.|+-+|..+ |+.+|..+...+-+++..+ ..+
T Consensus 315 D~R~~~~s~~~wk~~g~VE-----kv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~ 387 (463)
T KOG0270|consen 315 DCRDPSNSGKEWKFDGEVE-----KVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPG 387 (463)
T ss_pred eccCccccCceEEeccceE-----EEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCc
Confidence 888 5567888775432 11111 23455555 599999999875 8999999877655555554 234
Q ss_pred EEEEEeCceeEeecCCccCCCCCe
Q 040693 353 CIYMGNGYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~~~g~~ 376 (382)
.|-. .+....++++.|+..+++.
T Consensus 388 ~l~t-~s~d~~Vklw~~~~~~~~~ 410 (463)
T KOG0270|consen 388 LLST-ASTDKVVKLWKFDVDSPKS 410 (463)
T ss_pred ceee-ccccceEEEEeecCCCCcc
Confidence 4443 3444568889888888754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.7 Score=41.77 Aligned_cols=107 Identities=14% Similarity=0.077 Sum_probs=51.2
Q ss_pred cEEEEEccC--cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKS--GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~--g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+++....+ ..++.+|.++++..--.. ... ......|.+ ++..|++...+ .....|..+|
T Consensus 303 ~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~~~-~~~~~~~Sp--dG~~ia~~~~~--------------~~~~~i~~~d 364 (435)
T PRK05137 303 QIVFESDRSGSPQLYVMNADGSNPRRISF-GGG-RYSTPVWSP--RGDLIAFTKQG--------------GGQFSIGVMK 364 (435)
T ss_pred EEEEEECCCCCCeEEEEECCCCCeEEeec-CCC-cccCeEECC--CCCEEEEEEcC--------------CCceEEEEEE
Confidence 344444333 379999988776543221 110 011122222 66666655322 1124688889
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecC-C---CcEEEEeCCCCcE
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYR-Q---GPIYAMDVKTGKI 333 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~-~---g~l~~ld~~tG~i 333 (382)
+.+++...... .. ....+... ++..|+...... . ..|+.+|.++++.
T Consensus 365 ~~~~~~~~lt~-~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 365 PDGSGERILTS-GF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred CCCCceEeccC-CC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce
Confidence 87665432222 11 12223223 344555443211 1 3699999876654
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.66 Score=45.19 Aligned_cols=136 Identities=15% Similarity=0.202 Sum_probs=83.2
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceE--EEeeeCceeecEEEEEccCcEEEE
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM--LSMYRNKVKHDIVVAVQKSGFAWA 219 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~v~~~~~~g~l~a 219 (382)
...+|.+|..++|+.--.+..+.. .+.+ +.+..+ +..|...+..|.++.
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e--------------------------~~~~e~FeVShd---~~fia~~G~~G~I~l 329 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVE--------------------------EKSMERFEVSHD---SNFIAIAGNNGHIHL 329 (514)
T ss_pred ceEEEEeeccccccccccCCCCcc--------------------------cchhheeEecCC---CCeEEEcccCceEEe
Confidence 378999999988876544333221 1122 222222 357777888999999
Q ss_pred EeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 220 LDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 220 ld~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
|...|++.+-.+..+.. ........++..|+++ ...|.|+.+|+.+-+.+.+....+.
T Consensus 330 LhakT~eli~s~KieG~----v~~~~fsSdsk~l~~~-----------------~~~GeV~v~nl~~~~~~~rf~D~G~- 387 (514)
T KOG2055|consen 330 LHAKTKELITSFKIEGV----VSDFTFSSDSKELLAS-----------------GGTGEVYVWNLRQNSCLHRFVDDGS- 387 (514)
T ss_pred ehhhhhhhhheeeeccE----EeeEEEecCCcEEEEE-----------------cCCceEEEEecCCcceEEEEeecCc-
Confidence 99999999988886531 1122222467777776 3458899999999988888765553
Q ss_pred CCCcceEE-eCCEEEEeeecCCCcEEEEeCC
Q 040693 300 TAPGPVTV-ANGVLFGGSTYRQGPIYAMDVK 329 (382)
Q Consensus 300 ~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~ 329 (382)
..+..+.. -++. |+++..+.|.|-..|.+
T Consensus 388 v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~ 417 (514)
T KOG2055|consen 388 VHGTSLCISLNGS-YLATGSDSGIVNIYDGN 417 (514)
T ss_pred cceeeeeecCCCc-eEEeccCcceEEEeccc
Confidence 23333332 2333 22222246666666643
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.6 Score=47.93 Aligned_cols=229 Identities=15% Similarity=0.108 Sum_probs=118.0
Q ss_pred ccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCC
Q 040693 49 LCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTT 128 (382)
Q Consensus 49 ~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
++|.....|.-+|.+||+.. .+...... ... -....+++++..+|....+
T Consensus 34 L~t~~~d~Vi~idv~t~~~~--l~s~~~ed---~d~------ita~~l~~d~~~L~~a~rs------------------- 83 (775)
T KOG0319|consen 34 LYTACGDRVIIIDVATGSIA--LPSGSNED---EDE------ITALALTPDEEVLVTASRS------------------- 83 (775)
T ss_pred EEEecCceEEEEEccCCcee--cccCCccc---hhh------hheeeecCCccEEEEeecc-------------------
Confidence 33444667999999999997 22211100 000 1235677777777776554
Q ss_pred CCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEE
Q 040693 129 PTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIV 208 (382)
Q Consensus 129 ~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v 208 (382)
..+..++..+|+.+-...... ..|++.....++ +.++
T Consensus 84 --------------~llrv~~L~tgk~irswKa~H---------------------------e~Pvi~ma~~~~--g~Ll 120 (775)
T KOG0319|consen 84 --------------QLLRVWSLPTGKLIRSWKAIH---------------------------EAPVITMAFDPT--GTLL 120 (775)
T ss_pred --------------ceEEEEEcccchHhHhHhhcc---------------------------CCCeEEEEEcCC--CceE
Confidence 556667777887654443321 356554322222 3566
Q ss_pred EEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee----CCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 209 VAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD----ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 209 ~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
-.++-|+.+...|.+.+...=.++- .++..+..... -..++.+ ..++.+.++|.
T Consensus 121 AtggaD~~v~VWdi~~~~~th~fkG-----~gGvVssl~F~~~~~~~lL~sg-----------------~~D~~v~vwnl 178 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTHSFKG-----HGGVVSSLLFHPHWNRWLLASG-----------------ATDGTVRVWNL 178 (775)
T ss_pred EeccccceEEEEEeeCCEEEEEecC-----CCceEEEEEeCCccchhheeec-----------------CCCceEEEEEc
Confidence 6777788888888887776666652 12233332221 1223333 34588999999
Q ss_pred CCCcE-EeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeC------CEEEEE
Q 040693 285 SNGNV-LWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSN------GCIYMG 357 (382)
Q Consensus 285 ~tG~~-~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~------g~lyv~ 357 (382)
.++.. +-..........+-.+..++..++... ++..++..|..+-+.+-..+.-...-+.....+ ..+|..
T Consensus 179 ~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~--RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~Ta 256 (775)
T KOG0319|consen 179 NDKRTCLHTMILHKSAVTSLAFSEDSLELLSVG--RDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITA 256 (775)
T ss_pred ccCchHHHHHHhhhhheeeeeeccCCceEEEec--cCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEe
Confidence 88876 221111111111111112233333333 477788888876555555444332222222222 244445
Q ss_pred eCceeEeecCCccCCCCCeE
Q 040693 358 NGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 358 ~~~g~~~~~~~~~~~~g~~l 377 (382)
.+.|... -++..+|+.+
T Consensus 257 G~~g~~~---~~d~es~~~~ 273 (775)
T KOG0319|consen 257 GGSGVVQ---YWDSESGKCV 273 (775)
T ss_pred cCCceEE---EEecccchhh
Confidence 5555532 2455555544
|
|
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.3 Score=40.40 Aligned_cols=38 Identities=11% Similarity=0.250 Sum_probs=22.0
Q ss_pred ceEEEEECCCCcEEeeecCCC--CCCCCcceEEeCCEEEEee
Q 040693 277 GGWVAMDASNGNVLWSTADPS--NGTAPGPVTVANGVLFGGS 316 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~v~~~~ 316 (382)
..+.++|+++.+ |+.-.+. .......+..-++.+|+..
T Consensus 271 ~~v~~yd~~~~~--W~~~~~~p~~~r~~~~~~~~~~~iyv~G 310 (323)
T TIGR03548 271 RKILIYNVRTGK--WKSIGNSPFFARCGAALLLTGNNIFSIN 310 (323)
T ss_pred ceEEEEECCCCe--eeEcccccccccCchheEEECCEEEEEe
Confidence 569999999885 9864321 1222333444456666544
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=95.51 E-value=2.4 Score=40.58 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=68.4
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..+.++|+.+ ..|+.-.+.+ .......+.++.++.||+...... + ......+..+|+...+..|+.-
T Consensus 168 ~~v~~YDp~t--~~W~~~~~~p-~~~r~~~~~~~~~~~iyv~GG~~~-------~---~~~~~~~~~y~~~~~~~~W~~~ 234 (346)
T TIGR03547 168 KNVLSYDPST--NQWRNLGENP-FLGTAGSAIVHKGNKLLLINGEIK-------P---GLRTAEVKQYLFTGGKLEWNKL 234 (346)
T ss_pred ceEEEEECCC--CceeECccCC-CCcCCCceEEEECCEEEEEeeeeC-------C---CccchheEEEEecCCCceeeec
Confidence 3588899875 4688754321 111122333446788888744311 0 0112346677777777889854
Q ss_pred CCC--CCC---C---CcceEEeCCEEEEeeecC--C-------------------CcEEEEeCCCCcEeEEEe--cCCc-
Q 040693 295 DPS--NGT---A---PGPVTVANGVLFGGSTYR--Q-------------------GPIYAMDVKTGKILWSYD--TGAT- 342 (382)
Q Consensus 295 ~~~--~~~---~---~~~~~~~~~~v~~~~~~~--~-------------------g~l~~ld~~tG~ilw~~~--~~~~- 342 (382)
.+- +.. . .....+.++.||+..... . ..+.++|+++. .|+.- ++..
T Consensus 235 ~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--~W~~~~~lp~~~ 312 (346)
T TIGR03547 235 PPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNG--KWSKVGKLPQGL 312 (346)
T ss_pred CCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCC--cccccCCCCCCc
Confidence 322 110 0 111234577777764210 0 13456677654 47642 2222
Q ss_pred eecceEEeCCEEEEEeCc
Q 040693 343 IYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 343 ~~~~p~~~~g~lyv~~~~ 360 (382)
...+.++.+++|||..+.
T Consensus 313 ~~~~~~~~~~~iyv~GG~ 330 (346)
T TIGR03547 313 AYGVSVSWNNGVLLIGGE 330 (346)
T ss_pred eeeEEEEcCCEEEEEecc
Confidence 233445679999998764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.42 Score=49.02 Aligned_cols=168 Identities=10% Similarity=-0.018 Sum_probs=94.7
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.+...|.+.+...-.++-.+..++.. .+.++ ....+++.+..|+.+.++|
T Consensus 126 D~~v~VWdi~~~~~th~fkG~gGvVssl---------------------------~F~~~-~~~~lL~sg~~D~~v~vwn 177 (775)
T KOG0319|consen 126 DGRVKVWDIKNGYCTHSFKGHGGVVSSL---------------------------LFHPH-WNRWLLASGATDGTVRVWN 177 (775)
T ss_pred cceEEEEEeeCCEEEEEecCCCceEEEE---------------------------EeCCc-cchhheeecCCCceEEEEE
Confidence 4788888887777776666544322211 11111 1246778889999999999
Q ss_pred CCCCCe---eeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCC
Q 040693 222 RDSGSL---IWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN 298 (382)
Q Consensus 222 ~~tG~~---~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~ 298 (382)
..++.. .|+...... .......++..++.. .++..+..+|..+-+.+-..+...
T Consensus 178 l~~~~tcl~~~~~H~S~v-----tsL~~~~d~~~~ls~-----------------~RDkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 178 LNDKRTCLHTMILHKSAV-----TSLAFSEDSLELLSV-----------------GRDKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred cccCchHHHHHHhhhhhe-----eeeeeccCCceEEEe-----------------ccCcEEEEeehhhhhhhheechhh-
Confidence 998776 344332210 111111133333332 344567778876665555544432
Q ss_pred CCCCcceEEeC------CEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-c-e-ecceEEeCCEEEEEeCceeE
Q 040693 299 GTAPGPVTVAN------GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-T-I-YGGASVSNGCIYMGNGYKVT 363 (382)
Q Consensus 299 ~~~~~~~~~~~------~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~-~-~~~p~~~~g~lyv~~~~g~~ 363 (382)
...+.....+ .+++... .+|.+..+|.++++.+.+...+. . + ...++...+++++.+.+.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG--~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl 305 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAG--GSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNL 305 (775)
T ss_pred -heeeEEEechhcCCcceEEEEec--CCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceE
Confidence 1222222322 3455444 58999999999999988776552 1 1 22344466777777777663
|
|
| >KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.16 Score=53.16 Aligned_cols=112 Identities=14% Similarity=0.168 Sum_probs=77.5
Q ss_pred eecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 204 KHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 204 ~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+++++|++..++..+.+|.+||+..|.+....+ ....+|++. ..-+|...|
T Consensus 106 sdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~------------~~~~v~~gr-----------------t~ytv~m~d 156 (903)
T KOG1027|consen 106 SDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEP------------IKQLVYLGR-----------------TNYTVTMYD 156 (903)
T ss_pred CCCeEEecccccceEEecCCccceeEEEecCCc------------chhheeccc-----------------ceeEEeccc
Confidence 378999999999999999999999999986531 224566652 224577788
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceec
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYG 345 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~ 345 (382)
.++-...|......-.....+......+...... .+|.+.-+|.++|+.+|.-+...++..
T Consensus 157 ~~~~~~~wn~t~~dy~a~~~~~~~~~~~~~~~~~-~~g~i~t~D~~~g~~~~~q~~~spvv~ 217 (903)
T KOG1027|consen 157 KNVRGKTWNTTFGDYSAQYPSGVRGEKMSHFHSL-GNGYIVTVDSESGEKLWLQDLLSPVVA 217 (903)
T ss_pred CcccCceeeccccchhccCCCccCCceeEEEeec-CCccEEeccCcccceeeccccCCceEE
Confidence 8888888887754311112222222334444443 388999999999999999887655443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=3.2 Score=41.20 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=36.1
Q ss_pred ceEEEEECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeee-cCCCcEEEEeCCCCcEeEEEecCCc
Q 040693 277 GGWVAMDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGST-YRQGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
..|+.+|..+|+...-..... ...+... ++..++..+. .....|+.++. +|+...+...+.+
T Consensus 352 ~~I~v~d~~~g~~~~lt~~~~---~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g 415 (427)
T PRK02889 352 FKLYVQDLATGQVTALTDTTR---DESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG 415 (427)
T ss_pred EEEEEEECCCCCeEEccCCCC---ccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC
Confidence 368999999998765443221 1223223 3445555443 11235889998 5887777765433
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.54 Score=44.42 Aligned_cols=165 Identities=14% Similarity=0.140 Sum_probs=105.3
Q ss_pred CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCC
Q 040693 84 YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGG 163 (382)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~ 163 (382)
.+|+.-|..+..+++.+.....++. +..+-.+|.+||+++=...-.-
T Consensus 147 i~gHlgWVr~vavdP~n~wf~tgs~---------------------------------DrtikIwDlatg~LkltltGhi 193 (460)
T KOG0285|consen 147 ISGHLGWVRSVAVDPGNEWFATGSA---------------------------------DRTIKIWDLATGQLKLTLTGHI 193 (460)
T ss_pred hhhccceEEEEeeCCCceeEEecCC---------------------------------CceeEEEEcccCeEEEeecchh
Confidence 3577778777788877443333322 4889999999999987765321
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcc
Q 040693 164 YDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAM 243 (382)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~ 243 (382)
... .-+.++ .....++++..|+.+-|+|.+.-+++-.+.-- -+..
T Consensus 194 ~~v-------------------------r~vavS-----~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGH-----lS~V 238 (460)
T KOG0285|consen 194 ETV-------------------------RGVAVS-----KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGH-----LSGV 238 (460)
T ss_pred hee-------------------------eeeeec-----ccCceEEEecCCCeeEEEechhhhhHHHhccc-----ccee
Confidence 100 001110 22678888899999999999998888777621 1122
Q ss_pred cceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecC
Q 040693 244 WGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYR 319 (382)
Q Consensus 244 ~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~ 319 (382)
+.... ..+.|+.+ ..+..+...|.+|-..+......... ...+... ++-|+.++.
T Consensus 239 ~~L~lhPTldvl~t~-----------------grDst~RvWDiRtr~~V~~l~GH~~~--V~~V~~~~~dpqvit~S~-- 297 (460)
T KOG0285|consen 239 YCLDLHPTLDVLVTG-----------------GRDSTIRVWDIRTRASVHVLSGHTNP--VASVMCQPTDPQVITGSH-- 297 (460)
T ss_pred EEEeccccceeEEec-----------------CCcceEEEeeecccceEEEecCCCCc--ceeEEeecCCCceEEecC--
Confidence 22222 24555554 45677889999998888777755432 2222233 677888875
Q ss_pred CCcEEEEeCCCCcEeEEE
Q 040693 320 QGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 320 ~g~l~~ld~~tG~ilw~~ 337 (382)
++.|...|...|+-.-..
T Consensus 298 D~tvrlWDl~agkt~~tl 315 (460)
T KOG0285|consen 298 DSTVRLWDLRAGKTMITL 315 (460)
T ss_pred CceEEEeeeccCceeEee
Confidence 888888898888765444
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.31 E-value=2.6 Score=39.61 Aligned_cols=123 Identities=18% Similarity=0.171 Sum_probs=69.0
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEE--EcCEEEEeccCccccccccccccccceEEEEeCc-cCceeeeeeccCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTY--YKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAK-TGRILWQTFMLPDNF 78 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~-tG~~lW~~~~~~~~~ 78 (382)
||.++|++.=...-++ +--+..--+. .+..||+..+.-+. .+|.|-.+|++ +-+.+=.+....-
T Consensus 33 ~D~~~g~~~~~~~a~~--gRHFyGHg~fs~dG~~LytTEnd~~~---------g~G~IgVyd~~~~~~ri~E~~s~GI-- 99 (305)
T PF07433_consen 33 FDCRTGQLLQRLWAPP--GRHFYGHGVFSPDGRLLYTTENDYET---------GRGVIGVYDAARGYRRIGEFPSHGI-- 99 (305)
T ss_pred EEcCCCceeeEEcCCC--CCEEecCEEEcCCCCEEEEeccccCC---------CcEEEEEEECcCCcEEEeEecCCCc--
Confidence 5777777654333221 1111111222 24566665543332 27899999987 4444444443211
Q ss_pred CCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEE
Q 040693 79 GKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWY 158 (382)
Q Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~ 158 (382)
|. ....+.+++..++|+.|.. .+-|-..+..+...+-+..|.-||..||+++=+
T Consensus 100 -------GP----Hel~l~pDG~tLvVANGGI---------------~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q 153 (305)
T PF07433_consen 100 -------GP----HELLLMPDGETLVVANGGI---------------ETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQ 153 (305)
T ss_pred -------Ch----hhEEEcCCCCEEEEEcCCC---------------ccCcccCceecChhhcCCceEEEecCCCceeee
Confidence 11 1245667776888877653 333333333344444467899999999999988
Q ss_pred EecCC
Q 040693 159 KQLGG 163 (382)
Q Consensus 159 ~~~~~ 163 (382)
..+++
T Consensus 154 ~~Lp~ 158 (305)
T PF07433_consen 154 VELPP 158 (305)
T ss_pred eecCc
Confidence 87754
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.25 E-value=3.4 Score=42.94 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeC--C
Q 040693 275 IAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSN--G 352 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~--g 352 (382)
.++.|..+|...|-=.-++..+......-.....++.++..+ -+|.|.+.|.+.++---.+..|.++..+.+.+| |
T Consensus 370 eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS--LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sG 447 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS--LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSG 447 (893)
T ss_pred CCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee--cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCC
Confidence 457788888888877777766553222222333455566666 599999999998887778888888877777766 7
Q ss_pred EEEEEeCceeEeecCCccCCCCCeE
Q 040693 353 CIYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
.|.+..+..+ .-+|--+.+||++|
T Consensus 448 elV~AG~~d~-F~IfvWS~qTGqll 471 (893)
T KOG0291|consen 448 ELVCAGAQDS-FEIFVWSVQTGQLL 471 (893)
T ss_pred CEEEeeccce-EEEEEEEeecCeee
Confidence 7777666544 44566778888876
|
|
| >COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.79 Score=49.19 Aligned_cols=186 Identities=13% Similarity=0.141 Sum_probs=99.6
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCC--cccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGY--DVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~ 211 (382)
..++.+..+|.|.+||+.+|.++..+-.... .+..+ ..|. +....+.+-.+|.+.++..++.-+.+|+.+
T Consensus 583 ~~VyvgandGmLhaFd~~tG~E~fA~~P~avl~~l~~~-----t~~~---y~~h~yyVDg~p~~~da~~ng~wrsvL~g~ 654 (1036)
T COG3419 583 PVVYVGANDGMLHAFDANTGSERFAYVPSAVLSTLHSL-----TAPG---YTAHQYYVDGSPTAADAYDNGQWRSVLVGG 654 (1036)
T ss_pred ceEEEecCCceeeeccCCccceeeecCcHHHHhhhhhh-----cCCC---cccccceecCCceeehhhcCCcceEEEEee
Confidence 3455666789999999999999987642211 00000 0000 001245577899999887777545555555
Q ss_pred ccC--cEEEEEeCCCC-----CeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 212 QKS--GFAWALDRDSG-----SLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 212 ~~~--g~l~ald~~tG-----~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
... .-+||||..+- +++|++........|...-.|.+ .++.=++...+.-. - + .....+..
T Consensus 655 ~G~GG~glyALDVTdP~~~~~~~Lw~~~~~d~~~LG~t~gkP~Iv~l~~gswavl~GNGyn----S-~----~n~~al~~ 725 (1036)
T COG3419 655 LGAGGRGLYALDVTDPDFSNSNLLWENNSNDDPDLGYTMGKPRIVPLHDGSWAVLLGNGYN----S-P----ANGAALLV 725 (1036)
T ss_pred cCCCCceeEEEEccCccccCCcchhcccCCCccccccccCCCeEEEcCCCceEEEEccCCC----C-C----CCCcceEE
Confidence 433 36999988754 48898876654334433333322 22222222222110 0 0 11233667
Q ss_pred EECCCC----cEEeeecCCCCCCCCc-----------ceEEe-C---CEEEEeeecCCCcEEEEeCCCCcE-eEEEe
Q 040693 282 MDASNG----NVLWSTADPSNGTAPG-----------PVTVA-N---GVLFGGSTYRQGPIYAMDVKTGKI-LWSYD 338 (382)
Q Consensus 282 ~d~~tG----~~~W~~~~~~~~~~~~-----------~~~~~-~---~~v~~~~~~~~g~l~~ld~~tG~i-lw~~~ 338 (382)
+++.++ +..|+..........+ ++..+ + +++|++. ..|.|+-||+.-... -|.+.
T Consensus 726 ~~L~t~~~~~~~~v~~g~~~~~g~~P~~~~~g~~~~~~~d~~~dG~vd~aYAGD--l~GnlWRFdLsg~~~n~W~va 800 (1036)
T COG3419 726 LNLLTLDATRKVPVQSGTGYGAGVSPVCVGVGGLDVAVLDLDGDGIVDYAYAGD--LGGNLWRFDLSGNAPNSWTVA 800 (1036)
T ss_pred EEeecCCcceeEEEeccCCccccccCccccccccccceeecCCCceEEEEEeec--cCCcEEEEEecCCCCCCccee
Confidence 777766 4555544322111111 11112 2 2788887 489999999874443 66654
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.064 Score=52.15 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=89.2
Q ss_pred ecEEEEEccCcEEEEEeCCC-CCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDS-GSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
..+++.++-|+.++.++.-+ ++.+-.+.--.. ........ ..+.-|.+. ..+..+..+|
T Consensus 227 ~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k---~Vrd~~~s-~~g~~fLS~----------------sfD~~lKlwD 286 (503)
T KOG0282|consen 227 GHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRK---PVRDASFN-NCGTSFLSA----------------SFDRFLKLWD 286 (503)
T ss_pred eeEEEecCCCceEEEEEEecCcceehhhhcchh---hhhhhhcc-ccCCeeeee----------------ecceeeeeec
Confidence 56777788888888877665 666655542110 00111111 234444442 4568899999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEeC-CEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc-eecceEEeCCEEEEEeCce
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVAN-GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT-IYGGASVSNGCIYMGNGYK 361 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~-~~~~p~~~~g~lyv~~~~g 361 (382)
.+||+.+-+..........- .-.++ +.++++.. +++|...|..+|+++-++...-+ +..-.-+.+|+-||++++.
T Consensus 287 tETG~~~~~f~~~~~~~cvk-f~pd~~n~fl~G~s--d~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 287 TETGQVLSRFHLDKVPTCVK-FHPDNQNIFLVGGS--DKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred cccceEEEEEecCCCceeee-cCCCCCcEEEEecC--CCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 99999998888765321111 11233 56666664 99999999999999887754433 3344455889999999886
Q ss_pred eEeecCCc
Q 040693 362 VTVGFGNK 369 (382)
Q Consensus 362 ~~~~~~~~ 369 (382)
..+=+|.+
T Consensus 364 ks~riWe~ 371 (503)
T KOG0282|consen 364 KSVRIWEN 371 (503)
T ss_pred ccEEEEEc
Confidence 65444433
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.4 Score=43.85 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=81.9
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..+..+|+.+.+ |..-++ - ...+...+.++-++.||+..+..+. ..-..+-++|+++ ..|+.-
T Consensus 349 ~~ve~YD~~~~~--W~~~a~-M-~~~R~~~~v~~l~g~iYavGG~dg~-----------~~l~svE~YDp~~--~~W~~v 411 (571)
T KOG4441|consen 349 SSVERYDPRTNQ--WTPVAP-M-NTKRSDFGVAVLDGKLYAVGGFDGE-----------KSLNSVECYDPVT--NKWTPV 411 (571)
T ss_pred ceEEEecCCCCc--eeccCC-c-cCccccceeEEECCEEEEEeccccc-----------cccccEEEecCCC--Cccccc
Confidence 468889999877 887322 1 2334556666678999988554311 2335688999865 568765
Q ss_pred CCCC-CCCCcceEEeCCEEEEeeecC-----CCcEEEEeCCCCcEeEEEecCC---ceecceEEeCCEEEEEeCce
Q 040693 295 DPSN-GTAPGPVTVANGVLFGGSTYR-----QGPIYAMDVKTGKILWSYDTGA---TIYGGASVSNGCIYMGNGYK 361 (382)
Q Consensus 295 ~~~~-~~~~~~~~~~~~~v~~~~~~~-----~g~l~~ld~~tG~ilw~~~~~~---~~~~~p~~~~g~lyv~~~~g 361 (382)
.+-. ........+-++++|+..... -..+.++|+.+.+ |+...+- ......++.+++||+..+..
T Consensus 412 a~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~ 485 (571)
T KOG4441|consen 412 APMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFGVAVLNGKIYVVGGFD 485 (571)
T ss_pred CCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccceEEEECCEEEEECCcc
Confidence 4221 223444456688888875311 1468899998655 7765443 24456788999999987754
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.5 Score=40.00 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=34.4
Q ss_pred ecEEEEEcc-Cc-EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCc
Q 040693 205 HDIVVAVQK-SG-FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANS 260 (382)
Q Consensus 205 ~~~v~~~~~-~g-~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~ 260 (382)
++.|++... .| .|.+++++ |+++=+++++... .....++.. +.+.||+++...
T Consensus 223 dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~-~t~~~FgG~-~~~~L~iTs~~~ 277 (307)
T COG3386 223 DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKR-PTNPAFGGP-DLNTLYITSARS 277 (307)
T ss_pred CCCEEEecccCCceEEEECCC-CcEEEEEECCCCC-CccceEeCC-CcCEEEEEecCC
Confidence 566774433 33 89999999 9999999987421 111222211 468999987654
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.23 Score=46.17 Aligned_cols=181 Identities=14% Similarity=0.132 Sum_probs=102.4
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEE-EeeeCceeecEEEEEccCcEEEEE
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMML-SMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
+|.|-..|-.|||+.--.++.+.+.++. ...+++. .+.++ ...+-.+..||.+-.+
T Consensus 234 DGFiEVWny~~GKlrKDLkYQAqd~fMM--------------------md~aVlci~FSRD---sEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 234 DGFIEVWNYTTGKLRKDLKYQAQDNFMM--------------------MDDAVLCISFSRD---SEMLASGSQDGKIKVW 290 (508)
T ss_pred cceeeeehhccchhhhhhhhhhhcceee--------------------cccceEEEeeccc---HHHhhccCcCCcEEEE
Confidence 4889999999999988777776654321 1122221 11211 1234445567777777
Q ss_pred eCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC
Q 040693 221 DRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT 300 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~ 300 (382)
...||..+-+++-.- ..|.......-|+..+... ..+.++...-.++||.+=++.......
T Consensus 291 ri~tG~ClRrFdrAH--tkGvt~l~FSrD~SqiLS~-----------------sfD~tvRiHGlKSGK~LKEfrGHsSyv 351 (508)
T KOG0275|consen 291 RIETGQCLRRFDRAH--TKGVTCLSFSRDNSQILSA-----------------SFDQTVRIHGLKSGKCLKEFRGHSSYV 351 (508)
T ss_pred EEecchHHHHhhhhh--ccCeeEEEEccCcchhhcc-----------------cccceEEEeccccchhHHHhcCccccc
Confidence 777777666665221 1111111111133333332 234556666778899887776655322
Q ss_pred CCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee------------cceEE--eCCEEEEEeCceeEeec
Q 040693 301 APGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY------------GGASV--SNGCIYMGNGYKVTVGF 366 (382)
Q Consensus 301 ~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~------------~~p~~--~~g~lyv~~~~g~~~~~ 366 (382)
......-++..+..++. +|.+.+.+.+|++-+-.++.++.-+ ...++ --+.+|+-+..|.++.-
T Consensus 352 n~a~ft~dG~~iisaSs--DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrs 429 (508)
T KOG0275|consen 352 NEATFTDDGHHIISASS--DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRS 429 (508)
T ss_pred cceEEcCCCCeEEEecC--CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEee
Confidence 22333334567777774 9999999999998888876655211 11122 23677777777665543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.6 Score=41.67 Aligned_cols=158 Identities=15% Similarity=0.078 Sum_probs=95.5
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
..+-..|+...+++|+.+..+.+.... ..|. +.....+. +|.....+...+.-+++..+|.
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~L-----rVPv----------W~tdi~Fl----~g~~~~~fat~T~~hqvR~YDt 233 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGL-----RVPV----------WITDIRFL----EGSPNYKFATITRYHQVRLYDT 233 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccc-----eeee----------eeccceec----CCCCCceEEEEecceeEEEecC
Confidence 566777888899999998877643211 1111 00111111 1222456778888899999999
Q ss_pred CCCC-eeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 223 DSGS-LIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 223 ~tG~-~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
..+. +.-+++.... .-...+...+++.||++ +..+.+..||.++|+..=..-... .-.
T Consensus 234 ~~qRRPV~~fd~~E~---~is~~~l~p~gn~Iy~g-----------------n~~g~l~~FD~r~~kl~g~~~kg~-tGs 292 (412)
T KOG3881|consen 234 RHQRRPVAQFDFLEN---PISSTGLTPSGNFIYTG-----------------NTKGQLAKFDLRGGKLLGCGLKGI-TGS 292 (412)
T ss_pred cccCcceeEeccccC---cceeeeecCCCcEEEEe-----------------cccchhheecccCceeeccccCCc-cCC
Confidence 9774 5555554321 11112222377889987 566889999999999876522211 011
Q ss_pred CcceEEeCC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 302 PGPVTVANG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 302 ~~~~~~~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
...+....+ .+.+.. +-+-.|..+|.+|.+++-+..+..
T Consensus 293 irsih~hp~~~~las~-GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 293 IRSIHCHPTHPVLASC-GLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred cceEEEcCCCceEEee-ccceeEEEeecccchhhhhhhhhc
Confidence 233333333 344433 257889999999988888776654
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.77 E-value=3.5 Score=38.33 Aligned_cols=183 Identities=13% Similarity=0.048 Sum_probs=104.9
Q ss_pred CcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEE
Q 040693 141 HSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 141 ~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
.+..|..|+..|-|-+-.++-....+. .+..+| + ++..+.++.|..+..+
T Consensus 78 ~d~tIryLsl~dNkylRYF~GH~~~V~--------------------sL~~sP--------~--~d~FlS~S~D~tvrLW 127 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLRYFPGHKKRVN--------------------SLSVSP--------K--DDTFLSSSLDKTVRLW 127 (311)
T ss_pred CCCceEEEEeecCceEEEcCCCCceEE--------------------EEEecC--------C--CCeEEecccCCeEEee
Confidence 357899999998888877765543211 111222 1 5778888888888888
Q ss_pred eCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCC--cEEeeecCCC
Q 040693 221 DRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG--NVLWSTADPS 297 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG--~~~W~~~~~~ 297 (382)
|..+-+.+=....... + ..+. ..+++|+...+ ...|..+|.+.- .+-=++.+..
T Consensus 128 DlR~~~cqg~l~~~~~-----p--i~AfDp~GLifA~~~~----------------~~~IkLyD~Rs~dkgPF~tf~i~~ 184 (311)
T KOG1446|consen 128 DLRVKKCQGLLNLSGR-----P--IAAFDPEGLIFALANG----------------SELIKLYDLRSFDKGPFTTFSITD 184 (311)
T ss_pred EecCCCCceEEecCCC-----c--ceeECCCCcEEEEecC----------------CCeEEEEEecccCCCCceeEccCC
Confidence 8775443333332211 1 1122 35677766433 235777777643 1111122111
Q ss_pred CC-CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee---cceEE-eCCEEEEEeCceeEeecCCcc
Q 040693 298 NG-TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY---GGASV-SNGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 298 ~~-~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~---~~p~~-~~g~lyv~~~~g~~~~~~~~~ 370 (382)
+. ..-..+-+ +|..+.+.+. .+.++.||+=+|.++-.+....... .+... -+++.+++.++...+++|++
T Consensus 185 ~~~~ew~~l~FS~dGK~iLlsT~--~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~- 261 (311)
T KOG1446|consen 185 NDEAEWTDLEFSPDGKSILLSTN--ASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNL- 261 (311)
T ss_pred CCccceeeeEEcCCCCEEEEEeC--CCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEc-
Confidence 00 01112222 3557777774 8999999999999988886554322 22223 56777776666555778887
Q ss_pred CCCCCeEEEE
Q 040693 371 FTSGTSLYAF 380 (382)
Q Consensus 371 ~~~g~~l~~~ 380 (382)
.+|+..-++
T Consensus 262 -~tg~~v~~~ 270 (311)
T KOG1446|consen 262 -ETGKKVAVL 270 (311)
T ss_pred -CCCcEeeEe
Confidence 558776655
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=4.5 Score=39.53 Aligned_cols=166 Identities=15% Similarity=0.163 Sum_probs=104.6
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
++.+|++.... ..+.+..+|.++++++=+...+... .-.++++++..+|+....
T Consensus 127 ~~~vYV~n~~~-----------~~~~vsvid~~t~~~~~~~~vG~~P--------------~~~a~~p~g~~vyv~~~~- 180 (381)
T COG3391 127 GKYVYVANAGN-----------GNNTVSVIDAATNKVTATIPVGNTP--------------TGVAVDPDGNKVYVTNSD- 180 (381)
T ss_pred CCEEEEEeccc-----------CCceEEEEeCCCCeEEEEEecCCCc--------------ceEEECCCCCeEEEEecC-
Confidence 56888877521 1678999999999998776553211 136788888899998733
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFG 190 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (382)
.+.|..+|. .+..+|+ ..... .....
T Consensus 181 -------------------------------~~~v~vi~~-~~~~v~~-~~~~~---------------------~~~~~ 206 (381)
T COG3391 181 -------------------------------DNTVSVIDT-SGNSVVR-GSVGS---------------------LVGVG 206 (381)
T ss_pred -------------------------------CCeEEEEeC-CCcceec-ccccc---------------------ccccC
Confidence 389999996 4777776 33221 11223
Q ss_pred CCceEEEeeeCceeecEEEEE-ccC--cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCcccccccc
Q 040693 191 EAPMMLSMYRNKVKHDIVVAV-QKS--GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNL 267 (382)
Q Consensus 191 ~~p~~~~~~~~g~~~~~v~~~-~~~--g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~ 267 (382)
..|....+..+| ..+++. ..+ +.+..+|..+++..+....... . ........-++..+|+...
T Consensus 207 ~~P~~i~v~~~g---~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~--------- 272 (381)
T COG3391 207 TGPAGIAVDPDG---NRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANS--------- 272 (381)
T ss_pred CCCceEEECCCC---CEEEEEeccCCCceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEec---------
Confidence 455555555455 334443 333 6999999999999988332211 0 0111111226777887632
Q ss_pred CCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 268 KPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 268 ~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
..+.+..+|..+.++.=......
T Consensus 273 -------~~~~V~vid~~~~~v~~~~~~~~ 295 (381)
T COG3391 273 -------QGGTVSVIDGATDRVVKTGPTGN 295 (381)
T ss_pred -------CCCeEEEEeCCCCceeeeecccc
Confidence 24789999999988877665544
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.69 E-value=5.8 Score=40.51 Aligned_cols=128 Identities=13% Similarity=0.080 Sum_probs=70.9
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..+..+|+.+. .|+.-.+.+ ........+..++.+|+..+.... ......+..+|++++ .|+.-
T Consensus 358 ~~v~~yd~~~~--~W~~~~~lp--~~r~~~~~~~~~~~iYv~GG~~~~----------~~~~~~v~~yd~~t~--~W~~~ 421 (534)
T PHA03098 358 NTVESWKPGES--KWREEPPLI--FPRYNPCVVNVNNLIYVIGGISKN----------DELLKTVECFSLNTN--KWSKG 421 (534)
T ss_pred ceEEEEcCCCC--ceeeCCCcC--cCCccceEEEECCEEEEECCcCCC----------CcccceEEEEeCCCC--eeeec
Confidence 35778888764 587644322 112223334467888886442110 011356899999875 58764
Q ss_pred CCCC-CCCCcceEEeCCEEEEeeecC-------CCcEEEEeCCCCcEeEEEecC--C-ceecceEEeCCEEEEEeCc
Q 040693 295 DPSN-GTAPGPVTVANGVLFGGSTYR-------QGPIYAMDVKTGKILWSYDTG--A-TIYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 295 ~~~~-~~~~~~~~~~~~~v~~~~~~~-------~g~l~~ld~~tG~ilw~~~~~--~-~~~~~p~~~~g~lyv~~~~ 360 (382)
.+.+ ..........++.+|+..... -..++++|+++. .|+.-.+ . ....+.++.++++|+..+.
T Consensus 422 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLNFPRINASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCCcccccceEEEECCEEEEEcCC
Confidence 3221 122334445677777754210 123889998865 4654221 1 2234456679999998764
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=3.4 Score=37.45 Aligned_cols=148 Identities=9% Similarity=-0.010 Sum_probs=73.3
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCccccee--eeCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAA--TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
-..+++++.+|.+...|..+- +-..++-+... ....... .++.++... ...|+.++.
T Consensus 136 QteLis~dqsg~irvWDl~~~--~c~~~liPe~~--~~i~sl~v~~dgsml~a~-----------------nnkG~cyvW 194 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGEN--SCTHELIPEDD--TSIQSLTVMPDGSMLAAA-----------------NNKGNCYVW 194 (311)
T ss_pred cceEEeecCCCcEEEEEccCC--ccccccCCCCC--cceeeEEEcCCCcEEEEe-----------------cCCccEEEE
Confidence 356788888999999998642 22223222111 1222222 245555443 345777877
Q ss_pred ECCCCcEEe------eecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC--ce-ecceEEeC
Q 040693 283 DASNGNVLW------STADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA--TI-YGGASVSN 351 (382)
Q Consensus 283 d~~tG~~~W------~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~--~~-~~~p~~~~ 351 (382)
+.-++...= ++..... ......+ ++.++..++ .+..++.++.++- +.-+..+.+ .. +-..-..|
T Consensus 195 ~l~~~~~~s~l~P~~k~~ah~~--~il~C~lSPd~k~lat~s--sdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~d 269 (311)
T KOG0315|consen 195 RLLNHQTASELEPVHKFQAHNG--HILRCLLSPDVKYLATCS--SDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSAD 269 (311)
T ss_pred EccCCCccccceEhhheecccc--eEEEEEECCCCcEEEeec--CCceEEEEecCCc-eeeEEEeecCCceEEeeeeccC
Confidence 777653322 2222211 1111222 234444444 3777888887654 211122211 12 22223356
Q ss_pred CEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 352 GCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 352 g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
++..|+.+....+.++.+.. |+.+-.|
T Consensus 270 g~YlvTassd~~~rlW~~~~--~k~v~qy 296 (311)
T KOG0315|consen 270 GEYLVTASSDHTARLWDLSA--GKEVRQY 296 (311)
T ss_pred ccEEEecCCCCceeeccccc--Cceeeec
Confidence 66666555557788887766 6655444
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.6 Score=43.77 Aligned_cols=215 Identities=12% Similarity=0.047 Sum_probs=113.2
Q ss_pred ceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCC
Q 040693 55 GSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDK 134 (382)
Q Consensus 55 g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (382)
..||.||++-|+.|=-+.+. ++..| ...+.+..+++.+++.+
T Consensus 155 ~evYRlNLEqGrfL~P~~~~-----------~~~lN--~v~in~~hgLla~Gt~~------------------------- 196 (703)
T KOG2321|consen 155 SEVYRLNLEQGRFLNPFETD-----------SGELN--VVSINEEHGLLACGTED------------------------- 196 (703)
T ss_pred cceEEEEccccccccccccc-----------cccce--eeeecCccceEEecccC-------------------------
Confidence 35677777777665554442 22222 24566666777776654
Q ss_pred CCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEE--eeeCceeecEEEEEc
Q 040693 135 CIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLS--MYRNKVKHDIVVAVQ 212 (382)
Q Consensus 135 ~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~v~~~~ 212 (382)
|.|-++|+.+-+.+=.......- .+. -+....|.+-. +..+ +-.+-+++
T Consensus 197 --------g~VEfwDpR~ksrv~~l~~~~~v--------~s~----------pg~~~~~svTal~F~d~---gL~~aVGt 247 (703)
T KOG2321|consen 197 --------GVVEFWDPRDKSRVGTLDAASSV--------NSH----------PGGDAAPSVTALKFRDD---GLHVAVGT 247 (703)
T ss_pred --------ceEEEecchhhhhheeeeccccc--------CCC----------ccccccCcceEEEecCC---ceeEEeec
Confidence 88999999888777776654330 000 01123333433 3322 35677899
Q ss_pred cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
.+|.++.+|..+-+++-..+-.-....-...|...-..+.|+.. ....+..+|..+|+..=.
T Consensus 248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~------------------Dk~~~kiWd~~~Gk~~as 309 (703)
T KOG2321|consen 248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM------------------DKRILKIWDECTGKPMAS 309 (703)
T ss_pred cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec------------------chHHhhhcccccCCceee
Confidence 99999999999988887766432111112234333122334332 223455678888887655
Q ss_pred ecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCC--CCcEeEEEecCC---c--eecceEEeCCEEEEEe
Q 040693 293 TADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVK--TGKILWSYDTGA---T--IYGGASVSNGCIYMGN 358 (382)
Q Consensus 293 ~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~--tG~ilw~~~~~~---~--~~~~p~~~~g~lyv~~ 358 (382)
++.-.. . .....+ +.|++|.+.. ...++.+=.- .-.+.|=..+.. . --..+.++++.-||+-
T Consensus 310 iEpt~~-l-ND~C~~p~sGm~f~Ane--~~~m~~yyiP~LGPaPrWCSfLdnlTEElEE~~~~TVYDnYkFvTk 379 (703)
T KOG2321|consen 310 IEPTSD-L-NDFCFVPGSGMFFTANE--SSKMHTYYIPSLGPAPRWCSFLDNLTEELEENPETTVYDNYKFVTK 379 (703)
T ss_pred ccccCC-c-CceeeecCCceEEEecC--CCcceeEEccccCCCchhhhHHHhHHHHHhcCCccccccceeeeeH
Confidence 543221 1 111222 3466666652 4443332211 123444322211 0 1134567888888874
|
|
| >TIGR03547 muta_rot_YjhT mutatrotase, YjhT family | Back alignment and domain information |
|---|
Probab=94.59 E-value=4.5 Score=38.75 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=47.2
Q ss_pred ceEEEEECCCCcEEeeecC--CCCCCCCcceEEeCCEEEEeeecC-----CCcEEEEeCCCCcEeEEEecCCce------
Q 040693 277 GGWVAMDASNGNVLWSTAD--PSNGTAPGPVTVANGVLFGGSTYR-----QGPIYAMDVKTGKILWSYDTGATI------ 343 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~v~~~~~~~-----~g~l~~ld~~tG~ilw~~~~~~~~------ 343 (382)
..+..+|+++. .|+... +........+...++.+|+..... ...++.+|.+..+-.|+.-.+-..
T Consensus 168 ~~v~~YDp~t~--~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~ 245 (346)
T TIGR03547 168 KNVLSYDPSTN--QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQ 245 (346)
T ss_pred ceEEEEECCCC--ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCcc
Confidence 56999999865 588643 321223334445577777754211 123566776656677865332111
Q ss_pred ----ecceEEeCCEEEEEeCc
Q 040693 344 ----YGGASVSNGCIYMGNGY 360 (382)
Q Consensus 344 ----~~~p~~~~g~lyv~~~~ 360 (382)
....++.+++||+..+.
T Consensus 246 ~~~~~~~a~~~~~~Iyv~GG~ 266 (346)
T TIGR03547 246 EGLAGAFAGISNGVLLVAGGA 266 (346)
T ss_pred ccccEEeeeEECCEEEEeecC
Confidence 11245689999998764
|
Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein. |
| >TIGR03032 conserved hypothetical protein TIGR03032 | Back alignment and domain information |
|---|
Probab=94.49 E-value=4.3 Score=38.19 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=59.5
Q ss_pred CCCCceEEEeeeCceeecEEE-EEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCcc-ccccc
Q 040693 189 FGEAPMMLSMYRNKVKHDIVV-AVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQ-HKNFN 266 (382)
Q Consensus 189 ~~~~p~~~~~~~~g~~~~~v~-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~-~~~~~ 266 (382)
++-+|..+ ++.++ .....|.+..+|.++|+..=-...+. ...+....++++|++.+... ...+.
T Consensus 204 mPhSPRWh--------dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG------~~rGL~f~G~llvVgmSk~R~~~~f~ 269 (335)
T TIGR03032 204 MPHSPRWY--------QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPG------FTRGLAFAGDFAFVGLSKLRESRVFG 269 (335)
T ss_pred CCcCCcEe--------CCeEEEEECCCCEEEEEcCCCCcEEEEEECCC------CCcccceeCCEEEEEeccccCCCCcC
Confidence 34577777 44554 45667899999998897655555432 22333445789999887755 33343
Q ss_pred cCCCCC--CCCCceEEEEECCCCcEEeeecCCC
Q 040693 267 LKPSKN--STIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 267 ~~~~~~--~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
.-|-.. ......|..+|++||+++--..+..
T Consensus 270 glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg 302 (335)
T TIGR03032 270 GLPIEERLDALGCGVAVIDLNSGDVVHWLRFEG 302 (335)
T ss_pred CCchhhhhhhhcccEEEEECCCCCEEEEEEeCC
Confidence 333222 1223669999999999776666544
|
This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown. |
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.48 E-value=6.2 Score=39.92 Aligned_cols=157 Identities=13% Similarity=0.079 Sum_probs=85.3
Q ss_pred ecEEEEEccCc------EEEEEeCCCCCeeeeeccCCCC-CCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCc
Q 040693 205 HDIVVAVQKSG------FAWALDRDSGSLIWSMEAGPGG-LGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAG 277 (382)
Q Consensus 205 ~~~v~~~~~~g------~l~ald~~tG~~~W~~~~~~~~-~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g 277 (382)
..+++++..+. .|+.+|..|++ |.+...... ..........+.+++||+-.+.... ....+
T Consensus 123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~----------~~~~n 190 (482)
T KOG0379|consen 123 DKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGT----------GDSLN 190 (482)
T ss_pred CeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECCEEEEECCccCc----------cccee
Confidence 44555555552 69999998764 444332211 1222333344466777765332211 12457
Q ss_pred eEEEEECCCCcEEeeecCCCC----CCCCcceEEeCCEEEEeeecC-----CCcEEEEeCCCCcEeEEEecCC------c
Q 040693 278 GWVAMDASNGNVLWSTADPSN----GTAPGPVTVANGVLFGGSTYR-----QGPIYAMDVKTGKILWSYDTGA------T 342 (382)
Q Consensus 278 ~v~a~d~~tG~~~W~~~~~~~----~~~~~~~~~~~~~v~~~~~~~-----~g~l~~ld~~tG~ilw~~~~~~------~ 342 (382)
.++++|+++-+ |..-.-.+ +..+..+.+.++++++.-.+. -+.+++||.++ ..|+..... .
T Consensus 191 dl~i~d~~~~~--W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R 266 (482)
T KOG0379|consen 191 DLHIYDLETST--WSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLST--WEWKLLPTGGDLPSPR 266 (482)
T ss_pred eeeeecccccc--ceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeeccc--ceeeeccccCCCCCCc
Confidence 79999999888 98643221 123334445555544433211 23599999997 778743321 2
Q ss_pred eecceEEeCCEEEEEeCcee-----EeecCCccCCCCCeEEE
Q 040693 343 IYGGASVSNGCIYMGNGYKV-----TVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 343 ~~~~p~~~~g~lyv~~~~g~-----~~~~~~~~~~~g~~l~~ 379 (382)
...++++.+.++++..+... ..-+|.++.. +..|.
T Consensus 267 ~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~ 306 (482)
T KOG0379|consen 267 SGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWS 306 (482)
T ss_pred ceeeeEEECCEEEEEcCCccccccccccccccccc--cccee
Confidence 34455577788877655332 3345666665 44444
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=5.5 Score=38.79 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=64.1
Q ss_pred EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecC
Q 040693 216 FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTAD 295 (382)
Q Consensus 216 ~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~ 295 (382)
.+.++|+.+ ..|+.-.+.+ .........+..++.||+...+.. ++ .....++.++....+..|+.-.
T Consensus 190 ~v~~YD~~t--~~W~~~~~~p-~~~~~~~a~v~~~~~iYv~GG~~~-------~~---~~~~~~~~~~~~~~~~~W~~~~ 256 (376)
T PRK14131 190 EVLSYDPST--NQWKNAGESP-FLGTAGSAVVIKGNKLWLINGEIK-------PG---LRTDAVKQGKFTGNNLKWQKLP 256 (376)
T ss_pred eEEEEECCC--CeeeECCcCC-CCCCCcceEEEECCEEEEEeeeEC-------CC---cCChhheEEEecCCCcceeecC
Confidence 588899875 4587643221 111222334446788887654311 11 1123345444444556698643
Q ss_pred --CCCCCC------Ccc-eEEeCCEEEEeeecCC----------C------------cEEEEeCCCCcEeEEEe--cCCc
Q 040693 296 --PSNGTA------PGP-VTVANGVLFGGSTYRQ----------G------------PIYAMDVKTGKILWSYD--TGAT 342 (382)
Q Consensus 296 --~~~~~~------~~~-~~~~~~~v~~~~~~~~----------g------------~l~~ld~~tG~ilw~~~--~~~~ 342 (382)
+..... ... ..+.++.||+... .. + .+.++|+++. .|+.- ++..
T Consensus 257 ~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~--~W~~~~~lp~~ 333 (376)
T PRK14131 257 DLPPAPGGSSQEGVAGAFAGYSNGVLLVAGG-ANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNG--KWQKVGELPQG 333 (376)
T ss_pred CCCCCCcCCcCCccceEeceeECCEEEEeec-cCCCCChhhhhcCCcccccCCcceeehheEEecCC--cccccCcCCCC
Confidence 221100 011 2344666776542 11 0 1346787765 47542 2222
Q ss_pred -eecceEEeCCEEEEEeCc
Q 040693 343 -IYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 343 -~~~~p~~~~g~lyv~~~~ 360 (382)
...+.+..+++|||..+.
T Consensus 334 r~~~~av~~~~~iyv~GG~ 352 (376)
T PRK14131 334 LAYGVSVSWNNGVLLIGGE 352 (376)
T ss_pred ccceEEEEeCCEEEEEcCC
Confidence 233456689999998764
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=4.4 Score=37.51 Aligned_cols=114 Identities=10% Similarity=0.086 Sum_probs=75.3
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+++|+.+++|......|.++|+..-.+.--. |....-... .+...|++.+ .+..-...|
T Consensus 156 D~~ilT~SGD~TCalWDie~g~~~~~f~GH~----gDV~slsl~p~~~ntFvSg~----------------cD~~aklWD 215 (343)
T KOG0286|consen 156 DNHILTGSGDMTCALWDIETGQQTQVFHGHT----GDVMSLSLSPSDGNTFVSGG----------------CDKSAKLWD 215 (343)
T ss_pred CCceEecCCCceEEEEEcccceEEEEecCCc----ccEEEEecCCCCCCeEEecc----------------cccceeeee
Confidence 6889999999999999999999988877211 111111111 2455666533 235566778
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
.+.|.-+=.+....... .+.-.+.+|..|+... +++....+|+...+.+-.+...
T Consensus 216 ~R~~~c~qtF~ghesDI-Nsv~ffP~G~afatGS-DD~tcRlyDlRaD~~~a~ys~~ 270 (343)
T KOG0286|consen 216 VRSGQCVQTFEGHESDI-NSVRFFPSGDAFATGS-DDATCRLYDLRADQELAVYSHD 270 (343)
T ss_pred ccCcceeEeeccccccc-ceEEEccCCCeeeecC-CCceeEEEeecCCcEEeeeccC
Confidence 88887666666554322 2333356777777654 6899999999988888877644
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.29 E-value=6.8 Score=39.58 Aligned_cols=131 Identities=9% Similarity=-0.037 Sum_probs=77.5
Q ss_pred ecEEEEEccC---cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 205 HDIVVAVQKS---GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 205 ~~~v~~~~~~---g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
++.||+.++. ..+..+|+.+ ..|..-.+-+ ......+.++-++.||+..+.. .....+.+
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~--n~W~~~~~l~--~~r~~~~~~~~~g~IYviGG~~-------------~~~~~ve~ 380 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGD--AAWVNMPSLL--KPRCNPAVASINNVIYVIGGHS-------------ETDTTTEY 380 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCC--CeEEECCCCC--CCCcccEEEEECCEEEEecCcC-------------CCCccEEE
Confidence 4556554332 3467788754 4687643321 1223344555789999874431 11245788
Q ss_pred EECCCCcEEeeecCCCC-CCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC--C-ceecceEEeCCEEEEE
Q 040693 282 MDASNGNVLWSTADPSN-GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG--A-TIYGGASVSNGCIYMG 357 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~--~-~~~~~p~~~~g~lyv~ 357 (382)
+|+++. .|+.-.+-. +........-++.+|+.. |...++|+++. .|+.-.+ . ....+.++.+|+||+.
T Consensus 381 ydp~~~--~W~~~~~m~~~r~~~~~~~~~~~IYv~G----G~~e~ydp~~~--~W~~~~~m~~~r~~~~~~v~~~~IYvi 452 (480)
T PHA02790 381 LLPNHD--QWQFGPSTYYPHYKSCALVFGRRLFLVG----RNAEFYCESSN--TWTLIDDPIYPRDNPELIIVDNKLLLI 452 (480)
T ss_pred EeCCCC--EEEeCCCCCCccccceEEEECCEEEEEC----CceEEecCCCC--cEeEcCCCCCCccccEEEEECCEEEEE
Confidence 998765 688743221 122333445688888864 56778898754 6875322 2 2345667899999998
Q ss_pred eCc
Q 040693 358 NGY 360 (382)
Q Consensus 358 ~~~ 360 (382)
.+.
T Consensus 453 GG~ 455 (480)
T PHA02790 453 GGF 455 (480)
T ss_pred CCc
Confidence 764
|
|
| >KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.28 E-value=2 Score=39.29 Aligned_cols=67 Identities=16% Similarity=0.230 Sum_probs=39.4
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCC-cccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGG-AMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
...+.+||.+|| .|...+.....+++ .....-+.++.+|+=.... +..+.+-..+++||++| ..|+
T Consensus 215 c~~i~~ld~~T~--aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYn---------g~ln~HfndLy~FdP~t--~~W~ 281 (392)
T KOG4693|consen 215 CDTIMALDLATG--AWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYN---------GTLNVHFNDLYCFDPKT--SMWS 281 (392)
T ss_pred cceeEEEecccc--ccccCCCCCcCCCcccccceEEEcceEEEecccc---------hhhhhhhcceeeccccc--chhe
Confidence 467999999876 68776554433333 3333334777888642211 11123346699999986 4566
Q ss_pred e
Q 040693 293 T 293 (382)
Q Consensus 293 ~ 293 (382)
.
T Consensus 282 ~ 282 (392)
T KOG4693|consen 282 V 282 (392)
T ss_pred e
Confidence 4
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=6.9 Score=39.52 Aligned_cols=102 Identities=11% Similarity=-0.002 Sum_probs=57.9
Q ss_pred ecEEEEEcc-C---cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVAVQK-S---GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~~~~-~---g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
++.||+.++ + ..+.++|+.+ -.|+.-.+.+. .....+.++-++.||+.. |.+.
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~--~~W~~~~~m~~--~r~~~~~~~~~~~IYv~G-------------------G~~e 418 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNH--DQWQFGPSTYY--PHYKSCALVFGRRLFLVG-------------------RNAE 418 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCC--CEEEeCCCCCC--ccccceEEEECCEEEEEC-------------------CceE
Confidence 566665432 2 3466788875 47987544321 112233445788999862 4467
Q ss_pred EEECCCCcEEeeec--CCCCCCCCcceEEeCCEEEEeeecC----CCcEEEEeCCCCc
Q 040693 281 AMDASNGNVLWSTA--DPSNGTAPGPVTVANGVLFGGSTYR----QGPIYAMDVKTGK 332 (382)
Q Consensus 281 a~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~v~~~~~~~----~g~l~~ld~~tG~ 332 (382)
++|+++. .|+.- .+.+. .....++-++.+|+..... ...+.++|+++.+
T Consensus 419 ~ydp~~~--~W~~~~~m~~~r-~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 419 FYCESSN--TWTLIDDPIYPR-DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EecCCCC--cEeEcCCCCCCc-cccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 8899765 78753 33322 3334456677788765311 1347777877543
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.10 E-value=3.5 Score=39.53 Aligned_cols=145 Identities=15% Similarity=0.101 Sum_probs=85.8
Q ss_pred EEEEEccC--cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 207 IVVAVQKS--GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 207 ~v~~~~~~--g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
++..++.. ..+-.+|.+.++.+|+..-.+....+ ...|.++.+..|+...- ...++. ++..+.|..||+
T Consensus 163 Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~--LrVPvW~tdi~Fl~g~~--~~~fat-----~T~~hqvR~YDt 233 (412)
T KOG3881|consen 163 IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLG--LRVPVWITDIRFLEGSP--NYKFAT-----ITRYHQVRLYDT 233 (412)
T ss_pred eEecCchhcccceeeeecccceeeeeccCCCCcccc--ceeeeeeccceecCCCC--CceEEE-----EecceeEEEecC
Confidence 33335554 56777888889999998755432221 22333344444442100 011111 155688999999
Q ss_pred CCC-cEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEE-EecCCceecceEEeCC-EEEEEeCce
Q 040693 285 SNG-NVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWS-YDTGATIYGGASVSNG-CIYMGNGYK 361 (382)
Q Consensus 285 ~tG-~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~-~~~~~~~~~~p~~~~g-~lyv~~~~g 361 (382)
+.+ +++=.+++.....+...+...++.||++.. .+.|..||..+|+.+-. +.--.+...+...+.+ .+..+.+=.
T Consensus 234 ~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~--~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLD 311 (412)
T KOG3881|consen 234 RHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT--KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLD 311 (412)
T ss_pred cccCcceeEeccccCcceeeeecCCCcEEEEecc--cchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccc
Confidence 988 566667766544444444445678999985 99999999999998876 3322234445555555 344444433
Q ss_pred e
Q 040693 362 V 362 (382)
Q Consensus 362 ~ 362 (382)
+
T Consensus 312 R 312 (412)
T KOG3881|consen 312 R 312 (412)
T ss_pred e
Confidence 4
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.03 E-value=5.8 Score=37.82 Aligned_cols=224 Identities=11% Similarity=0.049 Sum_probs=119.1
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+..+|.+|.++-|++-+.+..+++.. | ..++.+...-.|++-..
T Consensus 105 ee~IyIydI~~MklLhTI~t~~~n~~------g------l~AlS~n~~n~ylAyp~------------------------ 148 (391)
T KOG2110|consen 105 EESIYIYDIKDMKLLHTIETTPPNPK------G------LCALSPNNANCYLAYPG------------------------ 148 (391)
T ss_pred cccEEEEecccceeehhhhccCCCcc------c------eEeeccCCCCceEEecC------------------------
Confidence 55799999999999999988655432 1 12333333322332211
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
....|.|+.+|..+=+.+=........+ ....++.+ +..|-.++.
T Consensus 149 -----s~t~GdV~l~d~~nl~~v~~I~aH~~~l---------------------------Aalafs~~---G~llATASe 193 (391)
T KOG2110|consen 149 -----STTSGDVVLFDTINLQPVNTINAHKGPL---------------------------AALAFSPD---GTLLATASE 193 (391)
T ss_pred -----CCCCceEEEEEcccceeeeEEEecCCce---------------------------eEEEECCC---CCEEEEecc
Confidence 0114899999999888887776443211 11122222 244555555
Q ss_pred Cc-EEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 214 SG-FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 214 ~g-~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
.| .+..++..+|+.+.+++-+.. ....+..+. +...+-++ ...++||.|.+++-.
T Consensus 194 KGTVIRVf~v~~G~kl~eFRRG~~---~~~IySL~Fs~ds~~L~~s-----------------S~TeTVHiFKL~~~~-- 251 (391)
T KOG2110|consen 194 KGTVIRVFSVPEGQKLYEFRRGTY---PVSIYSLSFSPDSQFLAAS-----------------SNTETVHIFKLEKVS-- 251 (391)
T ss_pred CceEEEEEEcCCccEeeeeeCCce---eeEEEEEEECCCCCeEEEe-----------------cCCCeEEEEEecccc--
Confidence 56 578889999999999996542 112233333 33433333 334789999887554
Q ss_pred eeecCCCCCC---CCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee-----cceEEeCCEEEEEeCcee
Q 040693 291 WSTADPSNGT---APGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY-----GGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 291 W~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~-----~~p~~~~g~lyv~~~~g~ 362 (382)
......+.. +..++..+ -.-|.++. -..+ +| +.+.--..+++.... ..+.-...+++|.+.+|.
T Consensus 252 -~~~~~~p~~~~~~~~~~sk~-~~sylps~--V~~~--~~--~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~ 323 (391)
T KOG2110|consen 252 -NNPPESPTAGTSWFGKVSKA-ATSYLPSQ--VSSV--LD--QSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGH 323 (391)
T ss_pred -cCCCCCCCCCCcccchhhhh-hhhhcchh--hhhh--hh--hccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCe
Confidence 111111000 11111000 01133331 1112 22 223333344443322 112225689999999887
Q ss_pred EeecCCccCCCCCeEEE
Q 040693 363 TVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 363 ~~~~~~~~~~~g~~l~~ 379 (382)
.+.|++++++|-..+.
T Consensus 324 -~y~y~l~~~~gGec~l 339 (391)
T KOG2110|consen 324 -LYSYRLPPKEGGECAL 339 (391)
T ss_pred -EEEEEcCCCCCceeEE
Confidence 5779999987776654
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=93.94 E-value=1 Score=44.44 Aligned_cols=172 Identities=8% Similarity=0.032 Sum_probs=96.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
+|.|...|+.+-.++-+++-.... .-.| ++..+ +-.|+.+.-|..|.|+|
T Consensus 530 dGnI~vwDLhnq~~VrqfqGhtDG--------------------------ascI-dis~d---GtklWTGGlDntvRcWD 579 (705)
T KOG0639|consen 530 DGNIAVWDLHNQTLVRQFQGHTDG--------------------------ASCI-DISKD---GTKLWTGGLDNTVRCWD 579 (705)
T ss_pred CCcEEEEEcccceeeecccCCCCC--------------------------ceeE-EecCC---CceeecCCCccceeehh
Confidence 389999999877777776654331 1111 22222 46789999999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
..+|+.+-+.++.....+ .+-.-.++.|-++..+ +.+..+. .+|..+...-.... .
T Consensus 580 lregrqlqqhdF~SQIfS----Lg~cP~~dWlavGMen-----------------s~vevlh-~skp~kyqlhlheS--c 635 (705)
T KOG0639|consen 580 LREGRQLQQHDFSSQIFS----LGYCPTGDWLAVGMEN-----------------SNVEVLH-TSKPEKYQLHLHES--C 635 (705)
T ss_pred hhhhhhhhhhhhhhhhee----cccCCCccceeeeccc-----------------CcEEEEe-cCCccceeeccccc--E
Confidence 999999988886432111 1111134455555333 3344444 24555555444331 1
Q ss_pred CcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCC
Q 040693 302 PGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGN 368 (382)
Q Consensus 302 ~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~ 368 (382)
.-.+-++ =|..|+.+. .+.-|-+...--|.-+.+.+....+.+.-+..|++++|+.+...-..+|+
T Consensus 636 VLSlKFa~cGkwfvStG-kDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 636 VLSLKFAYCGKWFVSTG-KDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred EEEEEecccCceeeecC-chhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 1222222 366666653 44555555544466666665555555555667888888755433333444
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=93.88 E-value=6.3 Score=37.72 Aligned_cols=134 Identities=16% Similarity=0.196 Sum_probs=69.7
Q ss_pred EEEEEeCCCCCeeeeeccCCC--C-CCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 216 FAWALDRDSGSLIWSMEAGPG--G-LGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 216 ~l~ald~~tG~~~W~~~~~~~--~-~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
.++++|..+ ..|+.-.... . .........++.++.+|+........... .+ ..-..+.++|+++. .|+
T Consensus 102 ~v~~yd~~t--~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~-~~----~~~~~v~~yd~~~~--~W~ 172 (341)
T PLN02153 102 DFYSYDTVK--NEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMK-TP----ERFRTIEAYNIADG--KWV 172 (341)
T ss_pred cEEEEECCC--CEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccC-CC----cccceEEEEECCCC--eEe
Confidence 588999875 5687532210 0 11122233345677888764432110000 00 11246899999865 588
Q ss_pred ecCCC----CCCCCcceEEeCCEEEEeeec------------CCCcEEEEeCCCCcEeEEEec-----CC-ceecceEEe
Q 040693 293 TADPS----NGTAPGPVTVANGVLFGGSTY------------RQGPIYAMDVKTGKILWSYDT-----GA-TIYGGASVS 350 (382)
Q Consensus 293 ~~~~~----~~~~~~~~~~~~~~v~~~~~~------------~~g~l~~ld~~tG~ilw~~~~-----~~-~~~~~p~~~ 350 (382)
.-... .........+.++.+|+.... ....++++|+++.+ |+.-. +. ....+.++.
T Consensus 173 ~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~~~~~g~~P~~r~~~~~~~~ 250 (341)
T PLN02153 173 QLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTEVETTGAKPSARSVFAHAVV 250 (341)
T ss_pred eCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEeccccCCCCCCcceeeeEEE
Confidence 63211 111222334456666663210 02468999988544 76421 21 233455678
Q ss_pred CCEEEEEeCc
Q 040693 351 NGCIYMGNGY 360 (382)
Q Consensus 351 ~g~lyv~~~~ 360 (382)
+++|||..+.
T Consensus 251 ~~~iyv~GG~ 260 (341)
T PLN02153 251 GKYIIIFGGE 260 (341)
T ss_pred CCEEEEECcc
Confidence 9999998774
|
|
| >COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.2 Score=47.80 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=90.6
Q ss_pred eecEEEEEccCcEEEEEeCCCCCeeeeeccCCCC-----CCCCcc-cceeeeCCeEEEEecCcc--ccccccCCCCCCCC
Q 040693 204 KHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG-----LGGGAM-WGAATDERRIYTNIANSQ--HKNFNLKPSKNSTI 275 (382)
Q Consensus 204 ~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~-----~~g~~~-~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~ 275 (382)
+...|+++.+||.|+++|..+|+.+..+-+.... ...... ......++...+...... .+.+++ +.....
T Consensus 581 R~~~VyvgandGmLhaFd~~tG~E~fA~~P~avl~~l~~~t~~~y~~h~yyVDg~p~~~da~~ng~wrsvL~--g~~G~G 658 (1036)
T COG3419 581 RAPVVYVGANDGMLHAFDANTGSERFAYVPSAVLSTLHSLTAPGYTAHQYYVDGSPTAADAYDNGQWRSVLV--GGLGAG 658 (1036)
T ss_pred ccceEEEecCCceeeeccCCccceeeecCcHHHHhhhhhhcCCCcccccceecCCceeehhhcCCcceEEEE--eecCCC
Confidence 4678999999999999999999999988754210 000000 001112222222221111 111111 111133
Q ss_pred CceEEEEECCCC-----cEEeeecCCC----CCCCCcceEE--eCCE--EEEeeec----CCCcEEEEeCCCC----cEe
Q 040693 276 AGGWVAMDASNG-----NVLWSTADPS----NGTAPGPVTV--ANGV--LFGGSTY----RQGPIYAMDVKTG----KIL 334 (382)
Q Consensus 276 ~g~v~a~d~~tG-----~~~W~~~~~~----~~~~~~~~~~--~~~~--v~~~~~~----~~g~l~~ld~~tG----~il 334 (382)
...++|+|+.+= +++|.+.... +..+..|.++ .++. |+++... ..-.++.+++.++ ++-
T Consensus 659 G~glyALDVTdP~~~~~~~Lw~~~~~d~~~LG~t~gkP~Iv~l~~gswavl~GNGynS~~n~~al~~~~L~t~~~~~~~~ 738 (1036)
T COG3419 659 GRGLYALDVTDPDFSNSNLLWENNSNDDPDLGYTMGKPRIVPLHDGSWAVLLGNGYNSPANGAALLVLNLLTLDATRKVP 738 (1036)
T ss_pred CceeEEEEccCccccCCcchhcccCCCccccccccCCCeEEEcCCCceEEEEccCCCCCCCCcceEEEEeecCCcceeEE
Confidence 466999998754 5889876543 2234455544 2443 2222211 1234677776654 445
Q ss_pred EEEecCCceecceEE-eCCEEEE----EeCceeEeecCCccCCCCCeEEEEEC
Q 040693 335 WSYDTGATIYGGASV-SNGCIYM----GNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 335 w~~~~~~~~~~~p~~-~~g~lyv----~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
|+.-........|.. ..+-+++ .+.+|.+-..|+-|. +=-||.|+|
T Consensus 739 v~~g~~~~~g~~P~~~~~g~~~~~~~d~~~dG~vd~aYAGDl--~GnlWRFdL 789 (1036)
T COG3419 739 VQSGTGYGAGVSPVCVGVGGLDVAVLDLDGDGIVDYAYAGDL--GGNLWRFDL 789 (1036)
T ss_pred EeccCCccccccCccccccccccceeecCCCceEEEEEeecc--CCcEEEEEe
Confidence 555444333333433 3333333 355666666677665 666888875
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.34 E-value=7.7 Score=37.01 Aligned_cols=150 Identities=16% Similarity=0.186 Sum_probs=92.2
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+..+++.-... +|.+|..+-+++=.++..++...|.....+-..+..+-.. . ....|.|+.+|.
T Consensus 97 r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp--~-------------s~t~GdV~l~d~ 160 (391)
T KOG2110|consen 97 RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP--G-------------STTSGDVVLFDT 160 (391)
T ss_pred cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEec--C-------------CCCCceEEEEEc
Confidence 44555544333 9999999999998887654322222222221122222221 1 134688999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCc-EEEEeCCCCcEeEEEecCCc--eecceEE-eCCEEEEEeC
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGP-IYAMDVKTGKILWSYDTGAT--IYGGASV-SNGCIYMGNG 359 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~-l~~ld~~tG~ilw~~~~~~~--~~~~p~~-~~g~lyv~~~ 359 (382)
.+-+..=.++..... -..+.+. +|.+.+... ++|. |.+|...+|+.+.++.-+.- ...+.+. .+..+..+++
T Consensus 161 ~nl~~v~~I~aH~~~--lAalafs~~G~llATAS-eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 161 INLQPVNTINAHKGP--LAALAFSPDGTLLATAS-EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred ccceeeeEEEecCCc--eeEEEECCCCCEEEEec-cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEec
Confidence 999999888866532 2233332 455555443 4564 67889999999999987642 2233444 4556666777
Q ss_pred ceeEeecCCccCCC
Q 040693 360 YKVTVGFGNKNFTS 373 (382)
Q Consensus 360 ~g~~~~~~~~~~~~ 373 (382)
+-.++|+|.++...
T Consensus 238 ~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 238 NTETVHIFKLEKVS 251 (391)
T ss_pred CCCeEEEEEecccc
Confidence 77789998887643
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.22 E-value=8.7 Score=37.33 Aligned_cols=131 Identities=14% Similarity=0.127 Sum_probs=58.5
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
...|+.+|..||+..=-++... ..+...+.|. +..+|...... |- ...+.+|+.++ ..|+..|..
T Consensus 167 ~~~i~~idl~tG~~~~v~~~~~--wlgH~~fsP~-dp~li~fCHEG---------pw--~~Vd~RiW~i~-~dg~~~~~v 231 (386)
T PF14583_consen 167 HCRIFTIDLKTGERKVVFEDTD--WLGHVQFSPT-DPTLIMFCHEG---------PW--DLVDQRIWTIN-TDGSNVKKV 231 (386)
T ss_dssp -EEEEEEETTT--EEEEEEESS---EEEEEEETT-EEEEEEEEE-S----------T--TTSS-SEEEEE-TTS---EES
T ss_pred CceEEEEECCCCceeEEEecCc--cccCcccCCC-CCCEEEEeccC---------Cc--ceeceEEEEEE-cCCCcceee
Confidence 4679999999998654444321 2233333332 33333332111 11 12346799999 567777776
Q ss_pred cCCCCC-CCCcceEE-eCC-EEEEeee--cCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCce
Q 040693 294 ADPSNG-TAPGPVTV-ANG-VLFGGST--YRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYK 361 (382)
Q Consensus 294 ~~~~~~-~~~~~~~~-~~~-~v~~~~~--~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g 361 (382)
...... ..+-..-. ++. +.|..-. +.+-.|+.+|++|++..|-.+.+. .++... .+++|+|+.+.+
T Consensus 232 ~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~--~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 232 HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPW--CSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-S--EEEEEE-TTSSEEEEEE--
T ss_pred ecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCc--eeeeEEcCCCCEEEecCCC
Confidence 532210 00111111 233 3443321 012358899999999887666653 334444 688999987654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=93.20 E-value=5.7 Score=39.23 Aligned_cols=79 Identities=18% Similarity=0.162 Sum_probs=51.8
Q ss_pred cccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCC
Q 040693 242 AMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQG 321 (382)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g 321 (382)
....|.+.+.+||+.+.. ..-|+++..|+.....+-++++.. +.......++.+++... .|
T Consensus 227 ~vS~PmIV~~RvYFlsD~--------------eG~GnlYSvdldGkDlrrHTnFtd--YY~R~~nsDGkrIvFq~---~G 287 (668)
T COG4946 227 NVSSPMIVGERVYFLSDH--------------EGVGNLYSVDLDGKDLRRHTNFTD--YYPRNANSDGKRIVFQN---AG 287 (668)
T ss_pred CcCCceEEcceEEEEecc--------------cCccceEEeccCCchhhhcCCchh--ccccccCCCCcEEEEec---CC
Confidence 445667788888887654 446889999997555555556543 23334445667777765 79
Q ss_pred cEEEEeCCCCcEeEEEecC
Q 040693 322 PIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 322 ~l~~ld~~tG~ilw~~~~~ 340 (382)
.||.+|++|-+ +-+.+++
T Consensus 288 dIylydP~td~-lekldI~ 305 (668)
T COG4946 288 DIYLYDPETDS-LEKLDIG 305 (668)
T ss_pred cEEEeCCCcCc-ceeeecC
Confidence 99999998643 3344443
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.16 E-value=9.1 Score=37.74 Aligned_cols=136 Identities=11% Similarity=0.039 Sum_probs=75.0
Q ss_pred CcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEE
Q 040693 141 HSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 141 ~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
|++.|...|..+-. -|...+.... +-.-+++- .++.+|..+++ ..+..+
T Consensus 174 YDg~vrl~DtR~~~-~~v~elnhg~------------------------pVe~vl~l-----psgs~iasAgG-n~vkVW 222 (487)
T KOG0310|consen 174 YDGKVRLWDTRSLT-SRVVELNHGC------------------------PVESVLAL-----PSGSLIASAGG-NSVKVW 222 (487)
T ss_pred CCceEEEEEeccCC-ceeEEecCCC------------------------ceeeEEEc-----CCCCEEEEcCC-CeEEEE
Confidence 57999999887654 5655554331 11222221 11344444444 348889
Q ss_pred eCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC
Q 040693 221 DRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT 300 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~ 300 (382)
|..+|..+=....+- .........+.++..++.+ ..++.|-.||..+-|.......+.+ .
T Consensus 223 Dl~~G~qll~~~~~H--~KtVTcL~l~s~~~rLlS~-----------------sLD~~VKVfd~t~~Kvv~s~~~~~p-v 282 (487)
T KOG0310|consen 223 DLTTGGQLLTSMFNH--NKTVTCLRLASDSTRLLSG-----------------SLDRHVKVFDTTNYKVVHSWKYPGP-V 282 (487)
T ss_pred EecCCceehhhhhcc--cceEEEEEeecCCceEeec-----------------ccccceEEEEccceEEEEeeecccc-e
Confidence 988665443322210 0000111112244556655 4568999999999999888887763 2
Q ss_pred CCcceEEeCCEEEEeeecCCCcEEEEeCC
Q 040693 301 APGPVTVANGVLFGGSTYRQGPIYAMDVK 329 (382)
Q Consensus 301 ~~~~~~~~~~~v~~~~~~~~g~l~~ld~~ 329 (382)
....+.-++..++++.. +|-+..-+..
T Consensus 283 Lsiavs~dd~t~viGms--nGlv~~rr~~ 309 (487)
T KOG0310|consen 283 LSIAVSPDDQTVVIGMS--NGLVSIRRRE 309 (487)
T ss_pred eeEEecCCCceEEEecc--cceeeeehhh
Confidence 33333334567777774 6766655433
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.2 Score=43.54 Aligned_cols=111 Identities=17% Similarity=0.144 Sum_probs=65.6
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
=+++.++..|++.=.|..+|++.-++..... ....+--. .+..+-++ ...|+|..+.+
T Consensus 222 fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G----~~~vm~qNP~NaVih~G-----------------hsnGtVSlWSP 280 (545)
T KOG1272|consen 222 FLLVAASEAGFLKYQDVSTGKLVASIRTGAG----RTDVMKQNPYNAVIHLG-----------------HSNGTVSLWSP 280 (545)
T ss_pred heeeecccCCceEEEeechhhhhHHHHccCC----ccchhhcCCccceEEEc-----------------CCCceEEecCC
Confidence 3455666789999999999999998886532 11111000 22333333 23466777777
Q ss_pred CCCcEEeeecCCCCCCCCcceEEeC-CEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVAN-GVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
..-+++=++--..+ ....++++. |...+.+ +.+..+-..|+.+-+.+-.+..+
T Consensus 281 ~skePLvKiLcH~g--~V~siAv~~~G~YMaTt-G~Dr~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 281 NSKEPLVKILCHRG--PVSSIAVDRGGRYMATT-GLDRKVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred CCcchHHHHHhcCC--CcceEEECCCCcEEeec-ccccceeEeeeccccccceeecC
Confidence 76666644433222 244556664 5444443 36788999999877766655553
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=93.10 E-value=6.2 Score=39.19 Aligned_cols=137 Identities=11% Similarity=0.102 Sum_probs=84.6
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
..+.+....||.+..+|..+-.+.-+++--+. |....-..-|+..|+.+ ..++.|.++|+
T Consensus 521 akvcFsccsdGnI~vwDLhnq~~VrqfqGhtD---GascIdis~dGtklWTG-----------------GlDntvRcWDl 580 (705)
T KOG0639|consen 521 AKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD---GASCIDISKDGTKLWTG-----------------GLDNTVRCWDL 580 (705)
T ss_pred cceeeeeccCCcEEEEEcccceeeecccCCCC---CceeEEecCCCceeecC-----------------CCccceeehhh
Confidence 35666778899999999998777666653221 11111111145566665 45688999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceE-EeCCEEEEEeCceeE
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS-VSNGCIYMGNGYKVT 363 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~-~~~g~lyv~~~~g~~ 363 (382)
++|+.+=+.++....++-+-. -.++.|.++.. ++.+.++.. ++....++.......-+.- ..=|+-||+++..+.
T Consensus 581 regrqlqqhdF~SQIfSLg~c-P~~dWlavGMe--ns~vevlh~-skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnl 656 (705)
T KOG0639|consen 581 REGRQLQQHDFSSQIFSLGYC-PTGDWLAVGME--NSNVEVLHT-SKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL 656 (705)
T ss_pred hhhhhhhhhhhhhhheecccC-CCccceeeecc--cCcEEEEec-CCccceeecccccEEEEEEecccCceeeecCchhh
Confidence 999998887776533222211 12466777764 778888874 4666666655443333332 255888888877664
Q ss_pred ee
Q 040693 364 VG 365 (382)
Q Consensus 364 ~~ 365 (382)
..
T Consensus 657 Ln 658 (705)
T KOG0639|consen 657 LN 658 (705)
T ss_pred hh
Confidence 33
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.10 E-value=2.4 Score=39.03 Aligned_cols=142 Identities=14% Similarity=0.169 Sum_probs=87.5
Q ss_pred EEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 207 IVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 207 ~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
+-+.....+.+=-||++||+.. .+.++. |..-.+..+ -++..++. +....|..+|++
T Consensus 75 VWft~qg~gaiGhLdP~tGev~-~ypLg~----Ga~Phgiv~gpdg~~Wit-----------------d~~~aI~R~dpk 132 (353)
T COG4257 75 VWFTAQGTGAIGHLDPATGEVE-TYPLGS----GASPHGIVVGPDGSAWIT-----------------DTGLAIGRLDPK 132 (353)
T ss_pred eEEecCccccceecCCCCCceE-EEecCC----CCCCceEEECCCCCeeEe-----------------cCcceeEEecCc
Confidence 3345566678888999999764 345443 223333333 34555654 333479999999
Q ss_pred CCcE-EeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcE-eEEEecCCceecceEEeCCEEEEEeCcee
Q 040693 286 NGNV-LWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKI-LWSYDTGATIYGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 286 tG~~-~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~i-lw~~~~~~~~~~~p~~~~g~lyv~~~~g~ 362 (382)
|++. .|...........-...++ .+++++... .|.-=-||+.++.+ +|..+.+.+-++-.+..+|.||+++-.|+
T Consensus 133 t~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q--~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagn 210 (353)
T COG4257 133 TLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQ--IGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGN 210 (353)
T ss_pred ccceEEeecccccCCCcccceeeCCCccEEEeec--cccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEecccc
Confidence 9864 5665543322222333455 467777652 55555788886654 67777665566666778999999988777
Q ss_pred EeecCCccCCCC
Q 040693 363 TVGFGNKNFTSG 374 (382)
Q Consensus 363 ~~~~~~~~~~~g 374 (382)
. +-.+|+.+|
T Consensus 211 a--iaridp~~~ 220 (353)
T COG4257 211 A--IARIDPFAG 220 (353)
T ss_pred c--eEEcccccC
Confidence 3 344666555
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.04 E-value=3.4 Score=38.31 Aligned_cols=104 Identities=13% Similarity=0.087 Sum_probs=61.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
+..|+.+|.+||+.+-+++....-+- . ..|.-. .-..|..+..|+++..+|
T Consensus 111 Dk~v~~wD~~tG~~~rk~k~h~~~vN--s--------------------~~p~rr-------g~~lv~SgsdD~t~kl~D 161 (338)
T KOG0265|consen 111 DKTVRGWDAETGKRIRKHKGHTSFVN--S--------------------LDPSRR-------GPQLVCSGSDDGTLKLWD 161 (338)
T ss_pred CceEEEEecccceeeehhccccceee--e--------------------cCcccc-------CCeEEEecCCCceEEEEe
Confidence 48999999999999999887644100 0 011111 124556677789999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
..+.+.+-.++... ...+... ....++.+ ..++.|...|++.++.+.......
T Consensus 162 ~R~k~~~~t~~~ky------qltAv~f~d~s~qv~sg-----------------gIdn~ikvWd~r~~d~~~~lsGh~ 216 (338)
T KOG0265|consen 162 IRKKEAIKTFENKY------QLTAVGFKDTSDQVISG-----------------GIDNDIKVWDLRKNDGLYTLSGHA 216 (338)
T ss_pred ecccchhhccccce------eEEEEEecccccceeec-----------------cccCceeeeccccCcceEEeeccc
Confidence 88665555443211 0011111 33455554 234667777887777777766544
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=92.77 E-value=12 Score=37.69 Aligned_cols=104 Identities=10% Similarity=0.056 Sum_probs=54.5
Q ss_pred EEEEEeCCCCCeeeeeccCCCC-CCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 216 FAWALDRDSGSLIWSMEAGPGG-LGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 216 ~l~ald~~tG~~~W~~~~~~~~-~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
.+.++|+.+ ..|+.-..+.. .........++.++.+|+...... .....++++|+++.+ |+..
T Consensus 295 ~~~~yd~~t--~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g------------~~~~dv~~yD~~t~~--W~~~ 358 (470)
T PLN02193 295 TLDSYNIVD--KKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG------------CEVDDVHYYDPVQDK--WTQV 358 (470)
T ss_pred eEEEEECCC--CEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC------------CccCceEEEECCCCE--EEEe
Confidence 578899886 46875432211 111122233345667776533211 123569999998764 8764
Q ss_pred CCC---C-CCCCcceEEeCCEEEEeeecC-------------CCcEEEEeCCCCcEeEEE
Q 040693 295 DPS---N-GTAPGPVTVANGVLFGGSTYR-------------QGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 295 ~~~---~-~~~~~~~~~~~~~v~~~~~~~-------------~g~l~~ld~~tG~ilw~~ 337 (382)
... + .......+..++.+|+..... ...++++|+.+. .|+.
T Consensus 359 ~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~--~W~~ 416 (470)
T PLN02193 359 ETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL--QWER 416 (470)
T ss_pred ccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcC--EEEE
Confidence 321 0 112233344566666654211 124899998854 4763
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.74 E-value=3.7 Score=39.74 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=82.5
Q ss_pred CceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCC
Q 040693 192 APMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSK 271 (382)
Q Consensus 192 ~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 271 (382)
.|+.+-+-.++ +..+++...+..+...|+.||..+-.++-+-.....+..|.| |+-.++++
T Consensus 270 ~~V~yi~wSPD--dryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~G--------------- 330 (519)
T KOG0293|consen 270 QPVSYIMWSPD--DRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTG--------------- 330 (519)
T ss_pred CceEEEEECCC--CCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEcc--CCceeEec---------------
Confidence 45555432222 456777777777999999999988887755222222233443 55555554
Q ss_pred CCCCCceEEEEECCCCcE--EeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE
Q 040693 272 NSTIAGGWVAMDASNGNV--LWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV 349 (382)
Q Consensus 272 ~~~~~g~v~a~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~ 349 (382)
..++.+.+.|. +|++ .|+.-.. +....-.++.++..++..+. +..+..++..+...+-......++.+--+.
T Consensus 331 --s~dr~i~~wdl-Dgn~~~~W~gvr~-~~v~dlait~Dgk~vl~v~~--d~~i~l~~~e~~~dr~lise~~~its~~iS 404 (519)
T KOG0293|consen 331 --SPDRTIIMWDL-DGNILGNWEGVRD-PKVHDLAITYDGKYVLLVTV--DKKIRLYNREARVDRGLISEEQPITSFSIS 404 (519)
T ss_pred --CCCCcEEEecC-Ccchhhccccccc-ceeEEEEEcCCCcEEEEEec--ccceeeechhhhhhhccccccCceeEEEEc
Confidence 34477888886 4544 4553211 11233444456667777664 777777776654443333333444444455
Q ss_pred eCCEEEEEeCcee
Q 040693 350 SNGCIYMGNGYKV 362 (382)
Q Consensus 350 ~~g~lyv~~~~g~ 362 (382)
.++++++.+-...
T Consensus 405 ~d~k~~LvnL~~q 417 (519)
T KOG0293|consen 405 KDGKLALVNLQDQ 417 (519)
T ss_pred CCCcEEEEEcccC
Confidence 6677766654433
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=11 Score=37.34 Aligned_cols=69 Identities=10% Similarity=-0.048 Sum_probs=36.2
Q ss_pred eCCEEEEeee-cCCCcEEEEeCCCCcEeEEEecCCceecceEEe-C-CEEEEEeCceeEeecCCccCCCCCeE
Q 040693 308 ANGVLFGGST-YRQGPIYAMDVKTGKILWSYDTGATIYGGASVS-N-GCIYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 308 ~~~~v~~~~~-~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~-~-g~lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
++..++.... .....|+.+|+++|++.--... .....+|... + ..|++....+....+|.++..+|+..
T Consensus 337 DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~ 408 (428)
T PRK01029 337 DGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR 408 (428)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 3444444432 1124699999999886432222 1223445543 3 44555544333345677777666654
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.6 Score=42.24 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=58.1
Q ss_pred EEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCC
Q 040693 219 ALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 219 ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
-.|+.||..+-+....+.....-....... ++..+++.+.. ....+++.+|++||+..=-++.+
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~--------------dg~~nly~lDL~t~~i~QLTdg~ 79 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDF--------------DGNRNLYLLDLATGEITQLTDGP 79 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-T--------------TSS-EEEEEETTT-EEEE---SS
T ss_pred EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEecc--------------CCCcceEEEEcccCEEEECccCC
Confidence 368899988877765432111112222222 45555554332 34577999999999998777765
Q ss_pred CCCCCCcceEEeCCEE-EEeeecCCCcEEEEeCCCCcEeEEEecCCcee--cceEE-eCCEEEEEe
Q 040693 297 SNGTAPGPVTVANGVL-FGGSTYRQGPIYAMDVKTGKILWSYDTGATIY--GGASV-SNGCIYMGN 358 (382)
Q Consensus 297 ~~~~~~~~~~~~~~~v-~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~--~~p~~-~~g~lyv~~ 358 (382)
....-+..+...+..+ |+-. ...|..+|++|.|+.--+..+..+- .+.++ .+++++++.
T Consensus 80 g~~~~g~~~s~~~~~~~Yv~~---~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~ 142 (386)
T PF14583_consen 80 GDNTFGGFLSPDDRALYYVKN---GRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGI 142 (386)
T ss_dssp -B-TTT-EE-TTSSEEEEEET---TTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEE
T ss_pred CCCccceEEecCCCeEEEEEC---CCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEE
Confidence 4222233332234444 5544 5789999999998865556665433 33333 467777663
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.56 E-value=9.7 Score=36.16 Aligned_cols=100 Identities=10% Similarity=0.105 Sum_probs=58.2
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcc--eEEe--CCEEEEeeecCCCcEEEEeCCC--CcEeEEEe---cCCce---
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGP--VTVA--NGVLFGGSTYRQGPIYAMDVKT--GKILWSYD---TGATI--- 343 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~--~~~~--~~~v~~~~~~~~g~l~~ld~~t--G~ilw~~~---~~~~~--- 343 (382)
..+|..++...|++.=....... ..++| +++- +..+|+... -++.|.++..+. |+..---. ++..+
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~ 243 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGT 243 (346)
T ss_pred CceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCC
Confidence 45689999998876554432221 12333 3332 357888764 567777666554 54432221 22221
Q ss_pred -ecceEE---eCCEEEEEeCceeEeecCCccCCCCCeE
Q 040693 344 -YGGASV---SNGCIYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 344 -~~~p~~---~~g~lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
..+.+. .+.-||+++........|.++..+|++.
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~ 281 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLE 281 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEE
Confidence 222221 5667888887777788899999988754
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.52 E-value=7.4 Score=36.21 Aligned_cols=162 Identities=10% Similarity=0.005 Sum_probs=90.6
Q ss_pred CCceEEEe-eeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCC
Q 040693 191 EAPMMLSM-YRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKP 269 (382)
Q Consensus 191 ~~p~~~~~-~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 269 (382)
..|+|-.- ..+ +..|+.+.-|+.+..+|..+|++.---.-..+ .-...|....--..|..+
T Consensus 72 ~~PvL~v~Wsdd---gskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p--vkt~~wv~~~~~~cl~TG------------- 133 (347)
T KOG0647|consen 72 DGPVLDVCWSDD---GSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP--VKTCHWVPGMNYQCLVTG------------- 133 (347)
T ss_pred CCCeEEEEEccC---CceEEeeccCCceEEEEccCCCeeeeeecccc--eeEEEEecCCCcceeEec-------------
Confidence 35666432 333 37899999999999999999965433221110 000111111011122332
Q ss_pred CCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC---ceecc
Q 040693 270 SKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA---TIYGG 346 (382)
Q Consensus 270 ~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~---~~~~~ 346 (382)
.-+.+|.-.|.+.-+++-+..+|...+ ...+...++++++. +..|.++++.++-...+...+. .+..-
T Consensus 134 ----SWDKTlKfWD~R~~~pv~t~~LPeRvY---a~Dv~~pm~vVata--~r~i~vynL~n~~te~k~~~SpLk~Q~R~v 204 (347)
T KOG0647|consen 134 ----SWDKTLKFWDTRSSNPVATLQLPERVY---AADVLYPMAVVATA--ERHIAVYNLENPPTEFKRIESPLKWQTRCV 204 (347)
T ss_pred ----ccccceeecccCCCCeeeeeeccceee---ehhccCceeEEEec--CCcEEEEEcCCCcchhhhhcCcccceeeEE
Confidence 234778999999999999999987422 22234567777774 7889999998776555443222 22223
Q ss_pred eEEeCCEE-EEEeCceeEeecCCccCCCCCeEEEE
Q 040693 347 ASVSNGCI-YMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 347 p~~~~g~l-yv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.+.-+... .+++-.|+ +.+..+|..+.+.-++|
T Consensus 205 a~f~d~~~~alGsiEGr-v~iq~id~~~~~~nFtF 238 (347)
T KOG0647|consen 205 ACFQDKDGFALGSIEGR-VAIQYIDDPNPKDNFTF 238 (347)
T ss_pred EEEecCCceEeeeecce-EEEEecCCCCccCceeE
Confidence 33333333 34555555 44555666444555554
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.41 E-value=3 Score=42.03 Aligned_cols=133 Identities=16% Similarity=0.099 Sum_probs=74.1
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccC--CCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWG--SSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTS 131 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
+|.|-++|+.+-+.+-+.+........++ ....- ++..+..++-.+-|++..
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg----~~~~~svTal~F~d~gL~~aVGts~---------------------- 249 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPG----GDAAPSVTALKFRDDGLHVAVGTST---------------------- 249 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCcc----ccccCcceEEEecCCceeEEeeccC----------------------
Confidence 89999999999998888887544332221 11111 122333333345554443
Q ss_pred CCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEE-EeeeCceeecEEEE
Q 040693 132 PDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMML-SMYRNKVKHDIVVA 210 (382)
Q Consensus 132 ~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~v~~ 210 (382)
|.++.+|+.+-+++-...-.. ..|+.. .....+ ..+.|+
T Consensus 250 -----------G~v~iyDLRa~~pl~~kdh~~---------------------------e~pi~~l~~~~~~-~q~~v~- 289 (703)
T KOG2321|consen 250 -----------GSVLIYDLRASKPLLVKDHGY---------------------------ELPIKKLDWQDTD-QQNKVV- 289 (703)
T ss_pred -----------CcEEEEEcccCCceeecccCC---------------------------ccceeeecccccC-CCceEE-
Confidence 889999999888877653221 122221 111111 022333
Q ss_pred EccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEE
Q 040693 211 VQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTN 256 (382)
Q Consensus 211 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~ 256 (382)
......+..+|..||+..-..+... .-.+.....+.+++|++
T Consensus 290 S~Dk~~~kiWd~~~Gk~~asiEpt~----~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 290 SMDKRILKIWDECTGKPMASIEPTS----DLNDFCFVPGSGMFFTA 331 (703)
T ss_pred ecchHHhhhcccccCCceeeccccC----CcCceeeecCCceEEEe
Confidence 3334457777888888877776532 22444554577888876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=13 Score=36.89 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=56.2
Q ss_pred cEEEEEccC--cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKS--GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~--g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+++..... ..||.+|.++|+..--...+. . ...|.+ +++.+.......+.. + ......|+.+|
T Consensus 290 ~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SP--DG~~Ia~~~~~~~~~-~-------~~~~~~I~v~d 355 (419)
T PRK04043 290 RIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVST--YKNYIVYSSRETNNE-F-------GKNTFNLYLIS 355 (419)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECC--CCCEEEEEEcCCCcc-c-------CCCCcEEEEEE
Confidence 344444332 379999999887631111111 0 112222 666555443221100 0 00124699999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeee-cCCCcEEEEeCCCCcEeEEEecC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGST-YRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
+.+|+..=-+.. . ....|... ++..|+..+. .....|+.++++ |+..-+++..
T Consensus 356 ~~~g~~~~LT~~-~--~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~-g~~~~~l~~~ 410 (419)
T PRK04043 356 TNSDYIRRLTAN-G--VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN-YNKSFLFPLK 410 (419)
T ss_pred CCCCCeEECCCC-C--CcCCeEECCCCCEEEEEEccCCcEEEEEEecC-CCeeEEeecC
Confidence 999975322222 1 12223323 3444544443 123358888875 6666666553
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=92.12 E-value=10 Score=35.47 Aligned_cols=185 Identities=14% Similarity=0.153 Sum_probs=87.6
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCce----eecEEEEEcc-CcEE
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKV----KHDIVVAVQK-SGFA 217 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~----~~~~v~~~~~-~g~l 217 (382)
-.|+++|++|++++-++.+++... .....+.++..+.. .+..+|..+. .+.|
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~-----------------------~~~s~lndl~VD~~~~~~~~~~aYItD~~~~gl 90 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIA-----------------------PPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGL 90 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS------------------------TCGGEEEEEEECTTTTS-SEEEEEEETTTCEE
T ss_pred cEEEEEECCCCcEEEEEECChHHc-----------------------ccccccceEEEEccCCCCcceEEEEeCCCcCcE
Confidence 689999999999999999987621 12223333332221 1356776654 3579
Q ss_pred EEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 218 WALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 218 ~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
..+|..+|+. |+...... ...+.......++..+--... ..+..+.|. ..+++..-|.+-+|..+++++...
T Consensus 91 IV~dl~~~~s-~Rv~~~~~--~~~p~~~~~~i~g~~~~~~dg--~~gial~~~---~~d~r~LYf~~lss~~ly~v~T~~ 162 (287)
T PF03022_consen 91 IVYDLATGKS-WRVLHNSF--SPDPDAGPFTIGGESFQWPDG--IFGIALSPI---SPDGRWLYFHPLSSRKLYRVPTSV 162 (287)
T ss_dssp EEEETTTTEE-EEEETCGC--TTS-SSEEEEETTEEEEETTS--EEEEEE-TT---STTS-EEEEEETT-SEEEEEEHHH
T ss_pred EEEEccCCcE-EEEecCCc--ceeccccceeccCceEecCCC--ccccccCCC---CCCccEEEEEeCCCCcEEEEEHHH
Confidence 9999998865 77765421 111111222223333321100 011111111 112233334444444444432110
Q ss_pred ---------------------CCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCC------CcEeEEEecCCceecceEE
Q 040693 298 ---------------------NGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKT------GKILWSYDTGATIYGGASV 349 (382)
Q Consensus 298 ---------------------~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~t------G~ilw~~~~~~~~~~~p~~ 349 (382)
.......+.++ +|.+|++.. ....|.+.|+++ -+++-+-+..-.+-.+..+
T Consensus 163 L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~-~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 163 LRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDV-EQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp HCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEEC-CCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred hhCccccccccccccceeccccCCCCceEEECCCCcEEEecC-CCCeEEEEeCCCCcCccchheeEEcCceeeccceeee
Confidence 00112233344 588888875 578899999874 1233332221123355666
Q ss_pred eC---CEEEEEeC
Q 040693 350 SN---GCIYMGNG 359 (382)
Q Consensus 350 ~~---g~lyv~~~ 359 (382)
.+ +.||+.+.
T Consensus 242 ~~~~~g~L~v~sn 254 (287)
T PF03022_consen 242 DPEGDGYLWVLSN 254 (287)
T ss_dssp -T--TS-EEEEE-
T ss_pred ccccCceEEEEEC
Confidence 55 99999875
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=92.06 E-value=8.2 Score=39.89 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=99.8
Q ss_pred ccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCC
Q 040693 51 CTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPT 130 (382)
Q Consensus 51 ~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (382)
..+.+.+.++|.+|-+++|+..+..... ...++.++.++|+...|.
T Consensus 211 ~ey~~~vSvID~etmeV~~qV~Vdgnpd--------------~v~~spdGk~afvTsyNs-------------------- 256 (635)
T PRK02888 211 KKYRSLFTAVDAETMEVAWQVMVDGNLD--------------NVDTDYDGKYAFSTCYNS-------------------- 256 (635)
T ss_pred cceeEEEEEEECccceEEEEEEeCCCcc--------------cceECCCCCEEEEeccCc--------------------
Confidence 3468999999999999999999853221 235666778888876431
Q ss_pred CCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEE
Q 040693 131 SPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVA 210 (382)
Q Consensus 131 ~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~ 210 (382)
+ ....+..++..+-..+..+...... ....+ +...++
T Consensus 257 ------E---~G~tl~em~a~e~d~~vvfni~~ie-------------------------------a~vkd---GK~~~V 293 (635)
T PRK02888 257 ------E---EGVTLAEMMAAERDWVVVFNIARIE-------------------------------EAVKA---GKFKTI 293 (635)
T ss_pred ------c---cCcceeeeccccCceEEEEchHHHH-------------------------------HhhhC---CCEEEE
Confidence 0 0134555554333322222221100 00011 223333
Q ss_pred EccCcEEEEEeCCC----C-CeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 211 VQKSGFAWALDRDS----G-SLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 211 ~~~~g~l~ald~~t----G-~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.++.+..+|..+ + +++-.++.+. ..++..+ |+..+|++. ..+..+..||
T Consensus 294 --~gn~V~VID~~t~~~~~~~v~~yIPVGK------sPHGV~vSPDGkylyVan----------------klS~tVSVID 349 (635)
T PRK02888 294 --GGSKVPVVDGRKAANAGSALTRYVPVPK------NPHGVNTSPDGKYFIANG----------------KLSPTVTVID 349 (635)
T ss_pred --CCCEEEEEECCccccCCcceEEEEECCC------CccceEECCCCCEEEEeC----------------CCCCcEEEEE
Confidence 245688999998 4 4555555443 3444433 788888863 3467899999
Q ss_pred CCCCcEEeeecCCC-------CCCCCcce--EEeC-CEEEEeeecCCCcEEEEeCCC
Q 040693 284 ASNGNVLWSTADPS-------NGTAPGPV--TVAN-GVLFGGSTYRQGPIYAMDVKT 330 (382)
Q Consensus 284 ~~tG~~~W~~~~~~-------~~~~~~~~--~~~~-~~v~~~~~~~~g~l~~ld~~t 330 (382)
.++.+.+..-++.. .....+|+ .+++ +.+|..-. -+.+|.-.|.++
T Consensus 350 v~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf-~dsqv~kwn~~~ 405 (635)
T PRK02888 350 VRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLF-LDSQIVKWNIEA 405 (635)
T ss_pred ChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEe-ecceeEEEehHH
Confidence 99877543222111 01122333 2333 46777654 467777777664
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.99 Score=42.55 Aligned_cols=91 Identities=9% Similarity=0.010 Sum_probs=56.4
Q ss_pred CCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCE-EEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCE
Q 040693 275 IAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGV-LFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGC 353 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~ 353 (382)
.+.++...+..|++-+-+...... +.+.+-++++ |+.++ .+..|..+|+..|+.+--.+-..... -.+..+++
T Consensus 338 gDRTikvW~~st~efvRtl~gHkR---GIAClQYr~rlvVSGS--SDntIRlwdi~~G~cLRvLeGHEeLv-RciRFd~k 411 (499)
T KOG0281|consen 338 GDRTIKVWSTSTCEFVRTLNGHKR---GIACLQYRDRLVVSGS--SDNTIRLWDIECGACLRVLEGHEELV-RCIRFDNK 411 (499)
T ss_pred CCceEEEEeccceeeehhhhcccc---cceehhccCeEEEecC--CCceEEEEeccccHHHHHHhchHHhh-hheeecCc
Confidence 347799999999998877776542 2333345555 44445 48899999999988765443222211 22335555
Q ss_pred EEEEeCceeEeecCCccC
Q 040693 354 IYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 354 lyv~~~~g~~~~~~~~~~ 371 (382)
-.|+.+|...++++.|.+
T Consensus 412 rIVSGaYDGkikvWdl~a 429 (499)
T KOG0281|consen 412 RIVSGAYDGKIKVWDLQA 429 (499)
T ss_pred eeeeccccceEEEEeccc
Confidence 556666655566666654
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.92 E-value=11 Score=35.13 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=29.2
Q ss_pred CCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeE
Q 040693 319 RQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVT 363 (382)
Q Consensus 319 ~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~ 363 (382)
+.+....+|++||+++-...+.. .+..+...+-+.|++..|.+
T Consensus 300 ~GN~~vi~da~tG~vv~~a~l~d--aaGva~~~~gf~vssg~G~~ 342 (366)
T COG3490 300 RGNRAVIWDAATGAVVSEAALPD--AAGVAAAKGGFAVSSGQGRI 342 (366)
T ss_pred CCCeEEEEEcCCCcEEecccccc--cccceeccCceEEecCCceE
Confidence 34456677888888877766553 24556677777778777774
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.31 E-value=3.2 Score=38.52 Aligned_cols=131 Identities=18% Similarity=0.153 Sum_probs=79.6
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCccccee-eeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAA-TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+.++++..||.|..+|...-+++=+++...+ ...-+ .++..++++ ..++.|..+|
T Consensus 25 ~~~LLvssWDgslrlYdv~~~~l~~~~~~~~p------lL~c~F~d~~~~~~G-----------------~~dg~vr~~D 81 (323)
T KOG1036|consen 25 SSDLLVSSWDGSLRLYDVPANSLKLKFKHGAP------LLDCAFADESTIVTG-----------------GLDGQVRRYD 81 (323)
T ss_pred CCcEEEEeccCcEEEEeccchhhhhheecCCc------eeeeeccCCceEEEe-----------------ccCceEEEEE
Confidence 56778888999999999887666555554321 11111 155678887 5568999999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCcee
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~ 362 (382)
+.+|+..---.-..+. ..-.-....+.++.++. ++.|-++|+.+-...-.++.+. -..+.-+.+++|.|++.+-.
T Consensus 82 ln~~~~~~igth~~~i-~ci~~~~~~~~vIsgsW--D~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~g~~LvVg~~~r~ 156 (323)
T KOG1036|consen 82 LNTGNEDQIGTHDEGI-RCIEYSYEVGCVISGSW--DKTIKFWDPRNKVVVGTFDQGK-KVYCMDVSGNRLVVGTSDRK 156 (323)
T ss_pred ecCCcceeeccCCCce-EEEEeeccCCeEEEccc--CccEEEEeccccccccccccCc-eEEEEeccCCEEEEeecCce
Confidence 9999765433322210 00011122466777776 8889999987633344444433 33345567788888766533
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.30 E-value=6.6 Score=39.48 Aligned_cols=113 Identities=11% Similarity=0.078 Sum_probs=71.2
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc-eeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG-AATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
..++-+++.|.+..++...|++-|++..+... +..... ..-.-+.+|... -+..+.-++.
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~--~~v~~~~~~~~~~ciyS~~-----------------ad~~v~~~~~ 131 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGGEITAKLSTDKHY--GNVNEILDAQRLGCIYSVG-----------------ADLKVVYILE 131 (541)
T ss_pred eEEEeecCCccEEEEEecCCeEEEEEecCCCC--CcceeeecccccCceEecC-----------------CceeEEEEec
Confidence 45667889999999999999999999854311 111111 011345666652 3467888899
Q ss_pred CCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
++++..-........ ...+.+ .++.+.+.. .+.|-.+|.+++|++-.++-.++
T Consensus 132 ~~~~~~~~~~~~~~~--~~sl~is~D~~~l~~a---s~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 132 KEKVIIRIWKEQKPL--VSSLCISPDGKILLTA---SRQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred ccceeeeeeccCCCc--cceEEEcCCCCEEEec---cceEEEEEccCceEEEEecCCCc
Confidence 988765554433321 222222 233333333 58999999999999999875544
|
|
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.97 E-value=9.7 Score=35.66 Aligned_cols=80 Identities=18% Similarity=0.214 Sum_probs=50.7
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCc----ceEEeC-------CEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPG----PVTVAN-------GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY 344 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~----~~~~~~-------~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~ 344 (382)
.-+|++||++|++++-++.++....... .+.++. +.+|++.. ..+.|.++|.++|+. ||+.......
T Consensus 33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~-~~~glIV~dl~~~~s-~Rv~~~~~~~ 110 (287)
T PF03022_consen 33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDS-GGPGLIVYDLATGKS-WRVLHNSFSP 110 (287)
T ss_dssp --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEET-TTCEEEEEETTTTEE-EEEETCGCTT
T ss_pred CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCC-CcCcEEEEEccCCcE-EEEecCCcce
Confidence 3579999999999999999886432211 234443 58999985 456899999998876 8886653211
Q ss_pred ---cceEEeCCEEEEE
Q 040693 345 ---GGASVSNGCIYMG 357 (382)
Q Consensus 345 ---~~p~~~~g~lyv~ 357 (382)
..+...++..|-.
T Consensus 111 ~p~~~~~~i~g~~~~~ 126 (287)
T PF03022_consen 111 DPDAGPFTIGGESFQW 126 (287)
T ss_dssp S-SSEEEEETTEEEEE
T ss_pred eccccceeccCceEec
Confidence 1234456665543
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=90.73 E-value=10 Score=39.41 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=66.6
Q ss_pred CCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eC
Q 040693 274 TIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SN 351 (382)
Q Consensus 274 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~ 351 (382)
..+.++..+|..+|..+-.+.....+ ...+.+. .|+ |+++...++.|...|..+|+++-++.-..+...+..+ .+
T Consensus 554 SsD~tVRlWDv~~G~~VRiF~GH~~~--V~al~~Sp~Gr-~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~d 630 (707)
T KOG0263|consen 554 SSDRTVRLWDVSTGNSVRIFTGHKGP--VTALAFSPCGR-YLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRD 630 (707)
T ss_pred CCCceEEEEEcCCCcEEEEecCCCCc--eEEEEEcCCCc-eEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecC
Confidence 44578999999999998888765532 2222332 343 3333336899999999999998777544444444443 67
Q ss_pred CEEEEEeCceeEeecCCccCCCCC
Q 040693 352 GCIYMGNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 352 g~lyv~~~~g~~~~~~~~~~~~g~ 375 (382)
|.++++.+.+..+-+|.+...++.
T Consensus 631 g~vLasgg~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCEEEecCCCCeEEEEEchhhccc
Confidence 777777777777777776666555
|
|
| >PRK14131 N-acetylneuraminic acid mutarotase; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=17 Score=35.29 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=44.0
Q ss_pred ceEEEEECCCCcEEeeecC--CCCCCCCcceEEeCCEEEEeeec-----CCCcEEEEeCCCCcEeEEEecCC--ce----
Q 040693 277 GGWVAMDASNGNVLWSTAD--PSNGTAPGPVTVANGVLFGGSTY-----RQGPIYAMDVKTGKILWSYDTGA--TI---- 343 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~v~~~~~~-----~~g~l~~ld~~tG~ilw~~~~~~--~~---- 343 (382)
..+.++|+++.+ |+.-. +........++..++.+|+.... +...++.++.+..+-.|+.-.+- .-
T Consensus 189 ~~v~~YD~~t~~--W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~ 266 (376)
T PRK14131 189 KEVLSYDPSTNQ--WKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSS 266 (376)
T ss_pred ceEEEEECCCCe--eeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCc
Confidence 569999987664 77632 32122233445557777765421 11234544443345568753221 10
Q ss_pred ----e-cceEEeCCEEEEEeCc
Q 040693 344 ----Y-GGASVSNGCIYMGNGY 360 (382)
Q Consensus 344 ----~-~~p~~~~g~lyv~~~~ 360 (382)
. ...++.+++|||..+.
T Consensus 267 ~~~~~~~~a~~~~~~iyv~GG~ 288 (376)
T PRK14131 267 QEGVAGAFAGYSNGVLLVAGGA 288 (376)
T ss_pred CCccceEeceeECCEEEEeecc
Confidence 1 1145689999998764
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.69 E-value=15 Score=34.55 Aligned_cols=141 Identities=13% Similarity=0.116 Sum_probs=78.7
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
..++..+.|-.+..+|...|.++-++..+.+.. ...|.|. +.+..++...+ ..-+.++..
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~rirf~spv~--~~q~hp~-k~n~~va~~~~-----------------~sp~vi~~s 137 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVW--GAQWHPR-KRNKCVATIME-----------------ESPVVIDFS 137 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEEEccCccc--eeeeccc-cCCeEEEEEec-----------------CCcEEEEec
Confidence 567778888889999999999999999876321 1233333 33444444222 123334443
Q ss_pred CCcEEee-ecCCCC-CCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEE-eCCEEEEEeC
Q 040693 286 NGNVLWS-TADPSN-GTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASV-SNGCIYMGNG 359 (382)
Q Consensus 286 tG~~~W~-~~~~~~-~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~-~~g~lyv~~~ 359 (382)
+++-.-- .+.+.. ....+-..+ .++++|.++. .|.+..+|+.|-+.+-.+.+.. ...-+..+ -.++.++.++
T Consensus 138 ~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts--KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNt 215 (405)
T KOG1273|consen 138 DPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS--KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINT 215 (405)
T ss_pred CCceeeccCCCccccccccccccccCCCCEEEEecC--cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEec
Confidence 3221111 111110 111111122 3678999986 9999999999999888777654 33333333 4555555544
Q ss_pred ceeEeecCC
Q 040693 360 YKVTVGFGN 368 (382)
Q Consensus 360 ~g~~~~~~~ 368 (382)
..++.-.|.
T Consensus 216 sDRvIR~ye 224 (405)
T KOG1273|consen 216 SDRVIRTYE 224 (405)
T ss_pred CCceEEEEe
Confidence 444433343
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=90.66 E-value=1.5 Score=41.43 Aligned_cols=100 Identities=12% Similarity=0.119 Sum_probs=70.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..|+.+++|-.+...+..|++.+-....-. .+.+. ..+.++++. ..+.+|..+
T Consensus 330 ~kyIVsASgDRTikvW~~st~efvRtl~gHk--------RGIAClQYr~rlvVSG----------------SSDntIRlw 385 (499)
T KOG0281|consen 330 DKYIVSASGDRTIKVWSTSTCEFVRTLNGHK--------RGIACLQYRDRLVVSG----------------SSDNTIRLW 385 (499)
T ss_pred cceEEEecCCceEEEEeccceeeehhhhccc--------ccceehhccCeEEEec----------------CCCceEEEE
Confidence 4578888999999999999998776655322 22222 445555542 456889999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCc
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGK 332 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ 332 (382)
|+..|+.+--.+.... ....+-+++.+++.+.. +|.+-..|..++.
T Consensus 386 di~~G~cLRvLeGHEe--LvRciRFd~krIVSGaY--DGkikvWdl~aal 431 (499)
T KOG0281|consen 386 DIECGACLRVLEGHEE--LVRCIRFDNKRIVSGAY--DGKIKVWDLQAAL 431 (499)
T ss_pred eccccHHHHHHhchHH--hhhheeecCceeeeccc--cceEEEEeccccc
Confidence 9999988755554432 23456678889998885 9998888877553
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.36 E-value=14 Score=38.13 Aligned_cols=129 Identities=14% Similarity=0.183 Sum_probs=77.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
++.++.++.|-.+..+.. |+.+-.+.-- -....+.++ ++.. |++. ..+|.|.-.+
T Consensus 151 e~~~vTgsaDKtIklWk~--~~~l~tf~gH-----tD~VRgL~vl~~~~-flSc----------------sNDg~Ir~w~ 206 (745)
T KOG0301|consen 151 ENTYVTGSADKTIKLWKG--GTLLKTFSGH-----TDCVRGLAVLDDSH-FLSC----------------SNDGSIRLWD 206 (745)
T ss_pred CCcEEeccCcceeeeccC--Cchhhhhccc-----hhheeeeEEecCCC-eEee----------------cCCceEEEEe
Confidence 457777777877776665 4444443311 012233333 3322 3332 3457888888
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEEeCCEEEEEeCcee
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~~~g~lyv~~~~g~ 362 (382)
. +|+.+-+......-...-..+..++.++.+. +++.+...+.. +..-...+|+ .+++.....+|.++++.++|.
T Consensus 207 ~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g--EDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgDIvvg~SDG~ 281 (745)
T KOG0301|consen 207 L-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG--EDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGDIVVGGSDGR 281 (745)
T ss_pred c-cCceeeeeeccceEEEEEEecCCCCeEEEec--CCceEEEeecC--ceEEEEecCccceEEEEEeeCCCEEEeccCce
Confidence 7 8888877765543211122223445555555 47877777754 6666667776 577777888999999999987
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=89.97 E-value=5.5 Score=38.37 Aligned_cols=136 Identities=10% Similarity=0.147 Sum_probs=74.1
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCccccee-eeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAA-TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.++++..+.|..+...|..||+.+-+...+. ..+... ..++.+++++ ..+..|..+|
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~hpd------~i~S~sfn~dGs~l~Tt----------------ckDKkvRv~d 201 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLDHPD------MVYSMSFNRDGSLLCTT----------------CKDKKVRVID 201 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecCCCC------eEEEEEeccCCceeeee----------------cccceeEEEc
Confidence 4666677788899999999999777765321 111111 1233333332 4567799999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeec-CCC-cEEEEeCCC---CcEeEEEecCCceecceEE--eCCEEEE
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTY-RQG-PIYAMDVKT---GKILWSYDTGATIYGGASV--SNGCIYM 356 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~g-~l~~ld~~t---G~ilw~~~~~~~~~~~p~~--~~g~lyv 356 (382)
+++|+++++.....+......+...++.++..... ... ++...|+++ .-.+-.++.+.++.. |.+ ..+.||+
T Consensus 202 pr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~-PFyD~dt~ivYl 280 (472)
T KOG0303|consen 202 PRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLL-PFYDPDTSIVYL 280 (472)
T ss_pred CCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEE-eeecCCCCEEEE
Confidence 99999999985444333344555566665544321 122 233335543 222333444333332 223 3356776
Q ss_pred Ee-CceeE
Q 040693 357 GN-GYKVT 363 (382)
Q Consensus 357 ~~-~~g~~ 363 (382)
.. +++.|
T Consensus 281 ~GKGD~~I 288 (472)
T KOG0303|consen 281 CGKGDSSI 288 (472)
T ss_pred EecCCcce
Confidence 53 44443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=22 Score=35.34 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=32.6
Q ss_pred ceEEEEECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeee-cCCCcEEEEeCCCCcEeE
Q 040693 277 GGWVAMDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGST-YRQGPIYAMDVKTGKILW 335 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~-~~~g~l~~ld~~tG~ilw 335 (382)
..|+.+|+.+|+..-...... ....+... ++..+++... .....|+.+|+++|+..-
T Consensus 351 ~~I~v~dl~~g~~~~Lt~~~~--~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 351 RQICVYDLATGRDYQLTTSPE--NKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred cEEEEEECCCCCeEEccCCCC--CccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 569999999998764443321 11223223 3344444332 124579999998877543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.98 Score=44.14 Aligned_cols=174 Identities=17% Similarity=0.101 Sum_probs=106.1
Q ss_pred CceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCC----CCCCcccceeeeCCeEEEEecCcccccccc
Q 040693 192 APMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG----LGGGAMWGAATDERRIYTNIANSQHKNFNL 267 (382)
Q Consensus 192 ~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~----~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~ 267 (382)
.|.-++...+| -.++.+...|.|.+||-.|+++..++.....- +.....+-.+...+.+|+-..++ ....++
T Consensus 131 GPY~~~ytrnG---rhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~G-tElHCl 206 (545)
T KOG1272|consen 131 GPYHLDYTRNG---RHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNG-TELHCL 206 (545)
T ss_pred CCeeeeecCCc---cEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCC-cEEeeh
Confidence 56666666666 46777888899999999999999998865321 01111111122566777753331 111111
Q ss_pred CCC------------C---CCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCc
Q 040693 268 KPS------------K---NSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGK 332 (382)
Q Consensus 268 ~~~------------~---~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ 332 (382)
+.. . .....|.+.-.|.++|+++=.+....+....-..--.|..+.++-. +|.|....++.-+
T Consensus 207 k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs--nGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS--NGTVSLWSPNSKE 284 (545)
T ss_pred hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC--CceEEecCCCCcc
Confidence 110 0 0245688999999999998777665432111110012345555553 8888888999888
Q ss_pred EeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccC
Q 040693 333 ILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 333 ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
+|=+.-...+..++.++ .+|+..++++-.+.+++|.+..
T Consensus 285 PLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 285 PLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN 324 (545)
T ss_pred hHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence 88877655556667777 4566666777777777766543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=89.74 E-value=22 Score=35.11 Aligned_cols=68 Identities=18% Similarity=0.187 Sum_probs=41.8
Q ss_pred CCEEEEeeecCCCcEEEEeCCCCcEeEEEecC-CceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 309 NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG-ATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 309 ~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~-~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
|-++..++. ++.|.+.|...|..+-.+.-. .++++-.-..+++...+.+.+..++++. .++|++.=+|
T Consensus 422 ~~~l~sas~--dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws--~~~~~l~~s~ 490 (524)
T KOG0273|consen 422 NLMLASASF--DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS--TKTGKLVKSY 490 (524)
T ss_pred CceEEEeec--CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc--ccchheeEee
Confidence 344444443 899999999999999988433 3444333335566666555555566543 4556655443
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=89.67 E-value=24 Score=35.47 Aligned_cols=129 Identities=12% Similarity=0.104 Sum_probs=70.2
Q ss_pred cEEEEEeCCCCCeeeeeccCCCC-CCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGG-LGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~-~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
..++++|..+ ..|+.-.+... .........+..++.||+-...... .....+.++|+++. .|+.
T Consensus 244 ndv~~yD~~t--~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~-----------~~~~~~~~yd~~t~--~W~~ 308 (470)
T PLN02193 244 NGFYSFDTTT--NEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSAT-----------ARLKTLDSYNIVDK--KWFH 308 (470)
T ss_pred ccEEEEECCC--CEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCC-----------CCcceEEEEECCCC--EEEe
Confidence 3589999986 46876432110 1111222333467788876433110 12356899999875 5875
Q ss_pred cCC-C---CCCCCcceEEeCCEEEEeeec---CCCcEEEEeCCCCcEeEEEecC-----C-ceecceEEeCCEEEEEeCc
Q 040693 294 ADP-S---NGTAPGPVTVANGVLFGGSTY---RQGPIYAMDVKTGKILWSYDTG-----A-TIYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 294 ~~~-~---~~~~~~~~~~~~~~v~~~~~~---~~g~l~~ld~~tG~ilw~~~~~-----~-~~~~~p~~~~g~lyv~~~~ 360 (382)
-.. . .......+.+.++.+|+.... ....++++|+++.+ |+.-.. . ....+.++.+++|||..+.
T Consensus 309 ~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~ 386 (470)
T PLN02193 309 CSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQVETFGVRPSERSVFASAAVGKHIVIFGGE 386 (470)
T ss_pred CCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCE--EEEeccCCCCCCCcceeEEEEECCEEEEECCc
Confidence 321 1 111222333445666654320 12569999998654 865321 1 1334456789999998774
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=89.65 E-value=23 Score=35.11 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=28.2
Q ss_pred ceEEEEECCCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCc---EEEEeCCCCcEeEEEec
Q 040693 277 GGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGP---IYAMDVKTGKILWSYDT 339 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~---l~~ld~~tG~ilw~~~~ 339 (382)
..++.+|+.+|+..-..... . ...+.... +..++.++. ++. ++.++ .+|+.+-++..
T Consensus 353 ~~i~~~Dl~~g~~~~lt~~~--~-~~~~~~sPdG~~i~~~s~--~g~~~~l~~~~-~~G~~~~~l~~ 413 (429)
T PRK01742 353 DNVVKQDLTSGSTEVLSSTF--L-DESPSISPNGIMIIYSST--QGLGKVLQLVS-ADGRFKARLPG 413 (429)
T ss_pred CCEEEEECCCCCeEEecCCC--C-CCCceECCCCCEEEEEEc--CCCceEEEEEE-CCCCceEEccC
Confidence 34777999999765322211 1 12222222 345555553 443 33334 45777666653
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.35 E-value=4.5 Score=36.45 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=40.0
Q ss_pred CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeC---CEEEEEeC
Q 040693 309 NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSN---GCIYMGNG 359 (382)
Q Consensus 309 ~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~---g~lyv~~~ 359 (382)
.+.+|+++. ..+.++-+|+.|||+|-++.++..-.++....+ +.+|+++.
T Consensus 222 eG~L~Va~~-ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 222 EGNLYVATF-NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred CCcEEEEEe-cCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEeh
Confidence 578888876 578999999999999999999977666666654 56777654
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=88.88 E-value=27 Score=34.93 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=61.9
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
.+.++-+++++|...-+...-... ..-.+..+.-.. ++.++.++.+|++..++
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~-------------------------ekk~Vl~v~F~e--ngdviTgDS~G~i~Iw~ 273 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKR-------------------------EKKFVLCVTFLE--NGDVITGDSGGNILIWS 273 (626)
T ss_pred CceEEEEEccCCceEEEeeccccc-------------------------cceEEEEEEEcC--CCCEEeecCCceEEEEe
Confidence 378888888877666555443221 112233332222 67788999999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
+.+-++.-+...- .|+...--...++.++.+ ..+..|.+.| .+=+.+-.+++|.
T Consensus 274 ~~~~~~~k~~~aH----~ggv~~L~~lr~GtllSG-----------------gKDRki~~Wd-~~y~k~r~~elPe 327 (626)
T KOG2106|consen 274 KGTNRISKQVHAH----DGGVFSLCMLRDGTLLSG-----------------GKDRKIILWD-DNYRKLRETELPE 327 (626)
T ss_pred CCCceEEeEeeec----CCceEEEEEecCccEeec-----------------CccceEEecc-ccccccccccCch
Confidence 8765555444421 122222222355555553 3346688888 5666666677765
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.73 E-value=12 Score=36.85 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=22.3
Q ss_pred eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 308 ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 308 ~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
+..+++++.. ...|=.||.+.|+.+-++..+
T Consensus 431 ~~~li~vg~~--~r~IDv~~~~~~q~v~el~~P 461 (498)
T KOG4328|consen 431 DYNLIVVGRY--PRPIDVFDGNGGQMVCELHDP 461 (498)
T ss_pred CccEEEEecc--CcceeEEcCCCCEEeeeccCc
Confidence 3467777774 677999999988877665444
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.67 E-value=18 Score=34.58 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=89.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
++.|+..+.|..+.+.+.+||-.+..+... +.|.-.+ .++.|+.+-. .+.+|..
T Consensus 205 gd~ilS~srD~tik~We~~tg~cv~t~~~h-------~ewvr~v~v~~DGti~As~s----------------~dqtl~v 261 (406)
T KOG0295|consen 205 GDHILSCSRDNTIKAWECDTGYCVKTFPGH-------SEWVRMVRVNQDGTIIASCS----------------NDQTLRV 261 (406)
T ss_pred CCeeeecccccceeEEecccceeEEeccCc-------hHhEEEEEecCCeeEEEecC----------------CCceEEE
Confidence 588999999999999999999888877743 3344222 5677776633 3466666
Q ss_pred EECCCC--------------cEEeeecCCCCCCCCcceEEeC-CEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecc
Q 040693 282 MDASNG--------------NVLWSTADPSNGTAPGPVTVAN-GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGG 346 (382)
Q Consensus 282 ~d~~tG--------------~~~W~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~ 346 (382)
.-..|+ .+.|.-....+.........++ ..+..++ +++.+-..|..+|+.|...---......
T Consensus 262 W~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 262 WVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeee
Confidence 666666 2344433222111111111111 2444444 6999999999999999887655555566
Q ss_pred eEEe-CCEEEEEeCceeEeecCCccCCC
Q 040693 347 ASVS-NGCIYMGNGYKVTVGFGNKNFTS 373 (382)
Q Consensus 347 p~~~-~g~lyv~~~~g~~~~~~~~~~~~ 373 (382)
.++. +|+..++-.+...+.+|.+...+
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccce
Confidence 6664 56655555666666666665543
|
|
| >PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis | Back alignment and domain information |
|---|
Probab=88.44 E-value=3.6 Score=39.49 Aligned_cols=60 Identities=25% Similarity=0.256 Sum_probs=38.8
Q ss_pred cceEEEEECCC-CcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEE
Q 040693 142 SNSLLALDLDT-GKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 142 ~g~v~ald~~t-G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
...||.+|++| |+.+|++....... .-+.|.+++...+|. -+.+|+++-.|+|+-+
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~----------------------gl~~~~~~D~d~DG~-~D~vYaGDl~GnlwR~ 236 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSG----------------------GLSSPAVVDSDGDGY-VDRVYAGDLGGNLWRF 236 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-----------------------EEEEEEE-TTSSSE-E-EEEEEETTSEEEEE
T ss_pred CcEEEEEECCCCCceEEEEecCCCCc----------------------cccccEEEeccCCCe-EEEEEEEcCCCcEEEE
Confidence 47899999999 99999987654310 114577776666664 5788999999999999
Q ss_pred eCCC
Q 040693 221 DRDS 224 (382)
Q Consensus 221 d~~t 224 (382)
|...
T Consensus 237 dl~~ 240 (335)
T PF05567_consen 237 DLSS 240 (335)
T ss_dssp E--T
T ss_pred ECCC
Confidence 9864
|
PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=88.12 E-value=14 Score=35.80 Aligned_cols=81 Identities=11% Similarity=0.152 Sum_probs=50.9
Q ss_pred CCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCC
Q 040693 275 IAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNG 352 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g 352 (382)
.+..|...+..||+.+-+.+.+. ...+.-...+|-.++++- ++.+|..+|+.+|++++.-....+.-..-++ .++
T Consensus 152 ~Dn~v~iWnv~tgeali~l~hpd--~i~S~sfn~dGs~l~Ttc-kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g 228 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLDHPD--MVYSMSFNRDGSLLCTTC-KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASG 228 (472)
T ss_pred CCceEEEEeccCCceeeecCCCC--eEEEEEeccCCceeeeec-ccceeEEEcCCCCcEeeecccccCCCcceeEEeccC
Confidence 45779999999999988877443 122222223454555443 6899999999999999987433333333232 455
Q ss_pred EEEEEeC
Q 040693 353 CIYMGNG 359 (382)
Q Consensus 353 ~lyv~~~ 359 (382)
. +.+++
T Consensus 229 ~-i~tTG 234 (472)
T KOG0303|consen 229 K-IFTTG 234 (472)
T ss_pred c-eeeec
Confidence 5 44443
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.91 E-value=9 Score=35.94 Aligned_cols=150 Identities=11% Similarity=-0.014 Sum_probs=78.9
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..+-++-.+|.++.+|-.|-.+.--+.. .-.+.....+ ++..++.+ ..+..+..+
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~lsa-----H~~pi~sl~WS~dgr~Llts-----------------S~D~si~lw 92 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARMLSA-----HVRPITSLCWSRDGRKLLTS-----------------SRDWSIKLW 92 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhhhhc-----cccceeEEEecCCCCEeeee-----------------cCCceeEEE
Confidence 45666777888888888877543222111 0011111122 55555554 455779999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecc-----eEEeCCEEEE
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGG-----ASVSNGCIYM 356 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~-----p~~~~g~lyv 356 (382)
|+..|.++-++.++.+ .+.....- ..+.+++.-....-.+.-|+...-+.|=+-+ ++....+ .-..+..+|.
T Consensus 93 Dl~~gs~l~rirf~sp-v~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~-d~dln~sas~~~fdr~g~yIit 170 (405)
T KOG1273|consen 93 DLLKGSPLKRIRFDSP-VWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDD-DGDLNSSASHGVFDRRGKYIIT 170 (405)
T ss_pred eccCCCceeEEEccCc-cceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCC-ccccccccccccccCCCCEEEE
Confidence 9999999999988773 33333322 2344444433122333333321122222211 1111111 2236788999
Q ss_pred EeCceeEeecCCccCCCCCeEEEEE
Q 040693 357 GNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 357 ~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
+++.|.+. + +++.|-+.+-+|+
T Consensus 171 GtsKGkll-v--~~a~t~e~vas~r 192 (405)
T KOG1273|consen 171 GTSKGKLL-V--YDAETLECVASFR 192 (405)
T ss_pred ecCcceEE-E--Eecchheeeeeee
Confidence 99998842 3 3444456666665
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=87.82 E-value=8.2 Score=38.16 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.3
Q ss_pred cceEEEEeCccCceeeeeecc
Q 040693 54 QGSLAKLDAKTGRILWQTFML 74 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~ 74 (382)
+..|+||+. +|+++|++++.
T Consensus 261 er~Lf~l~~-~G~l~~~krLd 280 (418)
T PF14727_consen 261 ERSLFCLKD-NGSLRFQKRLD 280 (418)
T ss_pred cceEEEEcC-CCeEEEEEecC
Confidence 447999996 89999999984
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.55 E-value=22 Score=34.86 Aligned_cols=114 Identities=16% Similarity=0.219 Sum_probs=71.1
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
..+..+..+..|...|..+|+..=........+....- .+.. ...++.++.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~w-----------------h~~~------------p~~LLsGs~ 307 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEW-----------------HPYE------------PSVLLSGSY 307 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEe-----------------cCCC------------ceEEEeccc
Confidence 33445566789999999999998877644332210000 1112 356778889
Q ss_pred CcEEEEEeCC---CCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCC-CcE
Q 040693 214 SGFAWALDRD---SGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASN-GNV 289 (382)
Q Consensus 214 ~g~l~ald~~---tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~t-G~~ 289 (382)
|+++...|.. .-..-|++...- -...|-+. .....+++ +.+|+|+-+|+++ |++
T Consensus 308 D~~V~l~D~R~~~~s~~~wk~~g~V----Ekv~w~~~-se~~f~~~-----------------tddG~v~~~D~R~~~~~ 365 (463)
T KOG0270|consen 308 DGTVALKDCRDPSNSGKEWKFDGEV----EKVAWDPH-SENSFFVS-----------------TDDGTVYYFDIRNPGKP 365 (463)
T ss_pred cceEEeeeccCccccCceEEeccce----EEEEecCC-CceeEEEe-----------------cCCceEEeeecCCCCCc
Confidence 9999988877 445667776321 11222221 23444554 4569999999985 599
Q ss_pred EeeecCCCC
Q 040693 290 LWSTADPSN 298 (382)
Q Consensus 290 ~W~~~~~~~ 298 (382)
+|+......
T Consensus 366 vwt~~AHd~ 374 (463)
T KOG0270|consen 366 VWTLKAHDD 374 (463)
T ss_pred eeEEEeccC
Confidence 999987654
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.53 E-value=19 Score=35.31 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=55.3
Q ss_pred CCCceEEEEECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCC
Q 040693 274 TIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNG 352 (382)
Q Consensus 274 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g 352 (382)
+.++..---|.++|..+-...............+ .++++|.... .++.|-.+|.+++..+-+|+...+-..+....+|
T Consensus 322 s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt-~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsEN 400 (506)
T KOG0289|consen 322 SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT-PDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSEN 400 (506)
T ss_pred cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC-CCceEEEEEcCCccccccCCCCCCceeEEEeccC
Confidence 3456666778888988877766432233333333 4678777643 6899999999999988888765444455555555
Q ss_pred EEEEEe
Q 040693 353 CIYMGN 358 (382)
Q Consensus 353 ~lyv~~ 358 (382)
.-|+.+
T Consensus 401 GY~Lat 406 (506)
T KOG0289|consen 401 GYWLAT 406 (506)
T ss_pred ceEEEE
Confidence 555543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.22 E-value=26 Score=32.91 Aligned_cols=141 Identities=8% Similarity=0.048 Sum_probs=80.4
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+.+-+....|+.+..+|..+|+.....++...... ..|.+ .+...+++. ...|-.+-.
T Consensus 139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~--v~w~~--~Gd~F~v~~------------------~~~i~i~q~ 196 (362)
T KOG0294|consen 139 GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATL--VSWSP--QGDHFVVSG------------------RNKIDIYQL 196 (362)
T ss_pred CceEEEEcCCceeeeehhhcCccceeeccCCccee--eEEcC--CCCEEEEEe------------------ccEEEEEec
Confidence 45566777799999999999998888876543111 22221 344444431 133444454
Q ss_pred CCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeC---CEEEE-EeCc
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSN---GCIYM-GNGY 360 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~---g~lyv-~~~~ 360 (382)
.+-++.-+...+.. ... ....+++.++++. +++.+.++|-+++.++-.+.....-.-...... +.+.+ .+++
T Consensus 197 d~A~v~~~i~~~~r-~l~-~~~l~~~~L~vG~--d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSD 272 (362)
T KOG0294|consen 197 DNASVFREIENPKR-ILC-ATFLDGSELLVGG--DNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSD 272 (362)
T ss_pred ccHhHhhhhhcccc-cee-eeecCCceEEEec--CCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccC
Confidence 45554444444431 112 2223567777776 388899999988888877754433222333222 34444 4556
Q ss_pred eeEeecCCccCC
Q 040693 361 KVTVGFGNKNFT 372 (382)
Q Consensus 361 g~~~~~~~~~~~ 372 (382)
|. ..+|.++..
T Consensus 273 G~-I~vWd~~~~ 283 (362)
T KOG0294|consen 273 GF-IKVWDIDME 283 (362)
T ss_pred ce-EEEEEcccc
Confidence 55 456777665
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=86.65 E-value=28 Score=32.57 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=64.3
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCccccee--eeCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAA--TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
...+++++-||.+..+|..+|+..---.-.. ...... ...+.++.+. -+++|-.+
T Consensus 65 ~~~~~~G~~dg~vr~~Dln~~~~~~igth~~------~i~ci~~~~~~~~vIsgs-----------------WD~~ik~w 121 (323)
T KOG1036|consen 65 ESTIVTGGLDGQVRRYDLNTGNEDQIGTHDE------GIRCIEYSYEVGCVISGS-----------------WDKTIKFW 121 (323)
T ss_pred CceEEEeccCceEEEEEecCCcceeeccCCC------ceEEEEeeccCCeEEEcc-----------------cCccEEEE
Confidence 4688999999999999999986543322211 111111 1345565553 34779999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEE
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWS 336 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~ 336 (382)
|+++-...-.++.+.. ...+.+.++++++++. +-.+..+|+.+=++-.+
T Consensus 122 D~R~~~~~~~~d~~kk---Vy~~~v~g~~LvVg~~--~r~v~iyDLRn~~~~~q 170 (323)
T KOG1036|consen 122 DPRNKVVVGTFDQGKK---VYCMDVSGNRLVVGTS--DRKVLIYDLRNLDEPFQ 170 (323)
T ss_pred eccccccccccccCce---EEEEeccCCEEEEeec--CceEEEEEcccccchhh
Confidence 9987444444444331 2233455777778774 78899999886555443
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.65 E-value=26 Score=32.17 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=98.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+-.+..+|..+||..-+.....++ . .....++++++.++..+
T Consensus 86 dk~ir~wd~r~~k~~~~i~~~~en-----------i---~i~wsp~g~~~~~~~kd------------------------ 127 (313)
T KOG1407|consen 86 DKTIRIWDIRSGKCTARIETKGEN-----------I---NITWSPDGEYIAVGNKD------------------------ 127 (313)
T ss_pred CceEEEEEeccCcEEEEeeccCcc-----------e---EEEEcCCCCEEEEecCc------------------------
Confidence 456777888888887777663222 1 23455666777775543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
..|.-||.++-+++=+.+..-... .+... -+++..+..++
T Consensus 128 ---------D~it~id~r~~~~~~~~~~~~e~n--------------------------e~~w~-----~~nd~Fflt~G 167 (313)
T KOG1407|consen 128 ---------DRITFIDARTYKIVNEEQFKFEVN--------------------------EISWN-----NSNDLFFLTNG 167 (313)
T ss_pred ---------ccEEEEEecccceeehhcccceee--------------------------eeeec-----CCCCEEEEecC
Confidence 789999998888877666543210 00000 11456666666
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
.|.+-.|..-.-|++-.++.-+ ........ ++..+-++.+ +..+-..|+.-- +-
T Consensus 168 lG~v~ILsypsLkpv~si~AH~-----snCicI~f~p~GryfA~GsA-----------------DAlvSLWD~~EL--iC 223 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIKAHP-----SNCICIEFDPDGRYFATGSA-----------------DALVSLWDVDEL--IC 223 (313)
T ss_pred CceEEEEeccccccccccccCC-----cceEEEEECCCCceEeeccc-----------------cceeeccChhHh--hh
Confidence 7888888877666666665432 12222222 2232222211 122223333211 11
Q ss_pred eecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee
Q 040693 292 STADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY 344 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~ 344 (382)
..-+..-..-...+.+ ++.++-.++ ++..|=.-+.+||..+|+.+..++.+
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaS--EDh~IDIA~vetGd~~~eI~~~~~t~ 276 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASAS--EDHFIDIAEVETGDRVWEIPCEGPTF 276 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccC--ccceEEeEecccCCeEEEeeccCCce
Confidence 1111110001122223 334444444 46666666788999999999887644
|
|
| >KOG0379 consensus Kelch repeat-containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.64 E-value=39 Score=34.22 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=61.7
Q ss_pred CcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccC------
Q 040693 141 HSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKS------ 214 (382)
Q Consensus 141 ~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~------ 214 (382)
....++++|.+|=+ |+.-..... ...|+ ..+.+.. ..+..+++++.+
T Consensus 188 ~~ndl~i~d~~~~~--W~~~~~~g~--------~P~pR------------~gH~~~~-----~~~~~~v~gG~~~~~~~l 240 (482)
T KOG0379|consen 188 SLNDLHIYDLETST--WSELDTQGE--------APSPR------------YGHAMVV-----VGNKLLVFGGGDDGDVYL 240 (482)
T ss_pred ceeeeeeecccccc--ceecccCCC--------CCCCC------------CCceEEE-----ECCeEEEEeccccCCcee
Confidence 35789999998877 987554331 11222 1222221 113444444443
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccc-eeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWG-AATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
+.+++||..+ ..|+.............+. ..+.+..+++........ ....+.++.+|.. +..|..
T Consensus 241 ~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~---------~~~l~~~~~l~~~--~~~w~~ 307 (482)
T KOG0379|consen 241 NDVHILDLST--WEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPK---------QEPLGDLYGLDLE--TLVWSK 307 (482)
T ss_pred cceEeeeccc--ceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccc---------ccccccccccccc--ccceee
Confidence 4699999998 8888444333233333333 334666666654443210 0134668888888 667765
Q ss_pred c
Q 040693 294 A 294 (382)
Q Consensus 294 ~ 294 (382)
-
T Consensus 308 ~ 308 (482)
T KOG0379|consen 308 V 308 (482)
T ss_pred e
Confidence 4
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.64 E-value=34 Score=33.53 Aligned_cols=110 Identities=11% Similarity=0.084 Sum_probs=63.9
Q ss_pred eCCeEEEEecCccccccccCCCCCCCCC-ceEEEEECCCC---cEEeeecCCCCCCCCcceEEeCCEEEEeeec--CCCc
Q 040693 249 DERRIYTNIANSQHKNFNLKPSKNSTIA-GGWVAMDASNG---NVLWSTADPSNGTAPGPVTVANGVLFGGSTY--RQGP 322 (382)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~v~a~d~~tG---~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~g~ 322 (382)
++..+++.... ... ..++.+|..++ ...|+.-.+........+...++.+|+.+.. ..++
T Consensus 237 d~~~l~i~~~~--------------~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~ 302 (414)
T PF02897_consen 237 DGRYLFISSSS--------------GTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGR 302 (414)
T ss_dssp TSSEEEEEEES--------------SSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-E
T ss_pred cccEEEEEEEc--------------cccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcE
Confidence 56667766544 223 77999999986 5555543322111233344457888887642 3578
Q ss_pred EEEEeCCCCcE-eEEEec-CC---ceecceEEeCCEEEEEeCceeEeecCCccCC
Q 040693 323 IYAMDVKTGKI-LWSYDT-GA---TIYGGASVSNGCIYMGNGYKVTVGFGNKNFT 372 (382)
Q Consensus 323 l~~ld~~tG~i-lw~~~~-~~---~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~ 372 (382)
|+.++.++... -|+..+ +. .......+.+++|++....+....+..++..
T Consensus 303 l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 303 LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 99999988764 455322 21 2456666788999988765554444444444
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=86.62 E-value=37 Score=34.00 Aligned_cols=197 Identities=14% Similarity=0.119 Sum_probs=104.0
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.++-+++++|.+.=+..+.+.... .+..+..+.+ ++.|+.+..
T Consensus 221 k~H~~Fw~~~~~~l~k~~~~fek~ek---------k~Vl~v~F~e-ngdviTgDS------------------------- 265 (626)
T KOG2106|consen 221 KGHLYFWTLRGGSLVKRQGIFEKREK---------KFVLCVTFLE-NGDVITGDS------------------------- 265 (626)
T ss_pred CceEEEEEccCCceEEEeeccccccc---------eEEEEEEEcC-CCCEEeecC-------------------------
Confidence 88999999999988877776433211 0111233332 234444443
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+|.|...+..+-+..-+....+..+ .+- +++ .++.|+.+.+
T Consensus 266 --------~G~i~Iw~~~~~~~~k~~~aH~ggv-----------------------~~L-~~l-------r~GtllSGgK 306 (626)
T KOG2106|consen 266 --------GGNILIWSKGTNRISKQVHAHDGGV-----------------------FSL-CML-------RDGTLLSGGK 306 (626)
T ss_pred --------CceEEEEeCCCceEEeEeeecCCce-----------------------EEE-EEe-------cCccEeecCc
Confidence 3888888876655555555222211 111 111 1567777888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecC---------cc---------cccc--ccCCCC--
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIAN---------SQ---------HKNF--NLKPSK-- 271 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~---------~~---------~~~~--~~~~~~-- 271 (382)
|-.+.+.| .+=+++-..+++.. .|... ..+-..+-+|+++.. .+ .+.+ ++-|..
T Consensus 307 DRki~~Wd-~~y~k~r~~elPe~--~G~iR-tv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q 382 (626)
T KOG2106|consen 307 DRKIILWD-DNYRKLRETELPEQ--FGPIR-TVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQ 382 (626)
T ss_pred cceEEecc-ccccccccccCchh--cCCee-EEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhh
Confidence 88888888 44555555555432 11111 000011113333221 11 0111 223322
Q ss_pred --CCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEe
Q 040693 272 --NSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKIL 334 (382)
Q Consensus 272 --~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~il 334 (382)
.+.+++.+...+ .-+++|+..+..+.. .... -.-+.|.+++. .|++++||.++-..+
T Consensus 383 ~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~-~~~f-hpsg~va~Gt~--~G~w~V~d~e~~~lv 441 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHKLEWTKIIEDPAE-CADF-HPSGVVAVGTA--TGRWFVLDTETQDLV 441 (626)
T ss_pred eeeccCcceEEEcc--CCceeEEEEecCcee-Eeec-cCcceEEEeec--cceEEEEecccceeE
Confidence 135567777777 779999988765311 1111 11246666775 899999999884443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.49 E-value=35 Score=33.52 Aligned_cols=114 Identities=14% Similarity=0.087 Sum_probs=72.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+..++..+.++..---|..+|+.+-...... ........+. -++.+|... ..++.|-.+|
T Consensus 315 geYllsAs~d~~w~Fsd~~~g~~lt~vs~~~---s~v~~ts~~fHpDgLifgtg----------------t~d~~vkiwd 375 (506)
T KOG0289|consen 315 GEYLLSASNDGTWAFSDISSGSQLTVVSDET---SDVEYTSAAFHPDGLIFGTG----------------TPDGVVKIWD 375 (506)
T ss_pred CcEEEEecCCceEEEEEccCCcEEEEEeecc---ccceeEEeeEcCCceEEecc----------------CCCceEEEEE
Confidence 5788899989977777899999888776531 1112222233 356666542 4568899999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
++.+..+=+++...+. ...+.+ +||+..+... +++.|.++|+..-+-.-++.+.
T Consensus 376 lks~~~~a~Fpght~~--vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~l~ 430 (506)
T KOG0289|consen 376 LKSQTNVAKFPGHTGP--VKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQLD 430 (506)
T ss_pred cCCccccccCCCCCCc--eeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceeecc
Confidence 9999877666654322 223334 4666555443 5777999998755544444443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.42 E-value=51 Score=35.37 Aligned_cols=138 Identities=12% Similarity=0.071 Sum_probs=81.6
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEE-EeeeCceeecEEEEEccCcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMML-SMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
-.|.+++.+++...-..+-... |++. ++.+. +..+.+.+-||.|.++|
T Consensus 118 ~~vK~~~~~D~s~~~~lrgh~a----------------------------pVl~l~~~p~---~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 118 TAVKLLNLDDSSQEKVLRGHDA----------------------------PVLQLSYDPK---GNFLAVSSCDGKVQIWD 166 (933)
T ss_pred eeEEEEeccccchheeecccCC----------------------------ceeeeeEcCC---CCEEEEEecCceEEEEE
Confidence 6889999988887776654422 2221 22222 46777888899999999
Q ss_pred CCCCCeeeeeccCCCC--CC-CCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCC
Q 040693 222 RDSGSLIWSMEAGPGG--LG-GGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~--~~-g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
.++|.+.-....-.+. .. ......+++ +++.+.+. ..++.|..|+..+.+++......
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-----------------~~d~~Vkvy~r~~we~~f~Lr~~ 229 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP-----------------PVDNTVKVYSRKGWELQFKLRDK 229 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEee-----------------ccCCeEEEEccCCceeheeeccc
Confidence 9999877655432210 00 111111222 33444433 24577999999999999887765
Q ss_pred CCCCCCcceEEe-CC-EEEEeeecCCCcEEEEeCCC
Q 040693 297 SNGTAPGPVTVA-NG-VLFGGSTYRQGPIYAMDVKT 330 (382)
Q Consensus 297 ~~~~~~~~~~~~-~~-~v~~~~~~~~g~l~~ld~~t 330 (382)
.......-+... +| ++-+++ .+|.|...|.++
T Consensus 230 ~~ss~~~~~~wsPnG~YiAAs~--~~g~I~vWnv~t 263 (933)
T KOG1274|consen 230 LSSSKFSDLQWSPNGKYIAAST--LDGQILVWNVDT 263 (933)
T ss_pred ccccceEEEEEcCCCcEEeeec--cCCcEEEEeccc
Confidence 421111222222 34 444434 588899888885
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=86.41 E-value=31 Score=32.90 Aligned_cols=134 Identities=18% Similarity=0.230 Sum_probs=64.8
Q ss_pred EEEEEeCCCCCeeeeeccCCCC-CCCCcccceeeeCCeEEEEecCccccccccCCCC-CCCCCceEEEEECCCCcEEeee
Q 040693 216 FAWALDRDSGSLIWSMEAGPGG-LGGGAMWGAATDERRIYTNIANSQHKNFNLKPSK-NSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 216 ~l~ald~~tG~~~W~~~~~~~~-~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
.+.++|+++. .|+.-..... .........++.++.+|+....... ..++. .......+.+||+++. .|+.
T Consensus 160 ~v~~yd~~~~--~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~----~~~gG~~~~~~~~v~~yd~~~~--~W~~ 231 (341)
T PLN02153 160 TIEAYNIADG--KWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATS----ILPGGKSDYESNAVQFFDPASG--KWTE 231 (341)
T ss_pred eEEEEECCCC--eEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccc----cccCCccceecCceEEEEcCCC--cEEe
Confidence 4788998854 6886432210 0111222233456777775332100 00110 0011356999999765 4875
Q ss_pred cC-----CCCCCCCcceEEeCCEEEEeeecC-------------CCcEEEEeCCCCcEeEEEec-------CCce--ecc
Q 040693 294 AD-----PSNGTAPGPVTVANGVLFGGSTYR-------------QGPIYAMDVKTGKILWSYDT-------GATI--YGG 346 (382)
Q Consensus 294 ~~-----~~~~~~~~~~~~~~~~v~~~~~~~-------------~g~l~~ld~~tG~ilw~~~~-------~~~~--~~~ 346 (382)
-. +... ......+.++.+|+..... ...|+++|+++ ..|+.-. +.+. +..
T Consensus 232 ~~~~g~~P~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~--~~W~~~~~~~~~~~pr~~~~~~~ 308 (341)
T PLN02153 232 VETTGAKPSAR-SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET--LVWEKLGECGEPAMPRGWTAYTT 308 (341)
T ss_pred ccccCCCCCCc-ceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCc--cEEEeccCCCCCCCCCccccccc
Confidence 32 2222 2223344566666654210 12689999874 4576321 1111 122
Q ss_pred eE-EeCCEEEEEeCc
Q 040693 347 AS-VSNGCIYMGNGY 360 (382)
Q Consensus 347 p~-~~~g~lyv~~~~ 360 (382)
.. ..++++|+..+.
T Consensus 309 ~~v~~~~~~~~~gG~ 323 (341)
T PLN02153 309 ATVYGKNGLLMHGGK 323 (341)
T ss_pred cccCCcceEEEEcCc
Confidence 23 345688886554
|
|
| >cd00028 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
Probab=86.21 E-value=9.4 Score=30.24 Aligned_cols=49 Identities=22% Similarity=0.453 Sum_probs=32.9
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
|.|+..|. +|+++|+...... . ...++.-..+|.++.++.
T Consensus 65 GnLvl~~~-~g~~vW~S~~~~~--------------------------~-------------~~~~~~L~ddGnlvl~~~ 104 (116)
T cd00028 65 GNLVIYDG-SGTVVWSSNTTRV--------------------------N-------------GNYVLVLLDDGNLVLYDS 104 (116)
T ss_pred CCeEEEcC-CCcEEEEecccCC--------------------------C-------------CceEEEEeCCCCEEEECC
Confidence 77888886 5899998655421 0 223334456788888886
Q ss_pred CCCCeeeeec
Q 040693 223 DSGSLIWSME 232 (382)
Q Consensus 223 ~tG~~~W~~~ 232 (382)
. |+++|+--
T Consensus 105 ~-~~~~W~Sf 113 (116)
T cd00028 105 D-GNFLWQSF 113 (116)
T ss_pred C-CCEEEcCC
Confidence 5 89999853
|
The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses. |
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=86.20 E-value=39 Score=33.91 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=53.1
Q ss_pred CCceEEEEECCCCcE-Eeee-cCCCCCCCCcceEE--eCCEEEEeeec----CCCcEEEEeCCCCcEeEEEecCCceecc
Q 040693 275 IAGGWVAMDASNGNV-LWST-ADPSNGTAPGPVTV--ANGVLFGGSTY----RQGPIYAMDVKTGKILWSYDTGATIYGG 346 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~-~W~~-~~~~~~~~~~~~~~--~~~~v~~~~~~----~~g~l~~ld~~tG~ilw~~~~~~~~~~~ 346 (382)
.++++..+|+++-+. +-.. .++. .+-.+-..+ ++.+|+.++.- ..|.|+.||..|-+++.+..++.....-
T Consensus 384 ~D~tLKvWDLrq~kkpL~~~tgL~t-~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~ 462 (641)
T KOG0772|consen 384 FDDTLKVWDLRQFKKPLNVRTGLPT-PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVR 462 (641)
T ss_pred CCCceeeeeccccccchhhhcCCCc-cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEE
Confidence 457788888887643 3222 1222 111222222 34566665431 2467999999999999999887543322
Q ss_pred eEE--eCCEEEEEeCceeE
Q 040693 347 ASV--SNGCIYMGNGYKVT 363 (382)
Q Consensus 347 p~~--~~g~lyv~~~~g~~ 363 (382)
.+. -=|.|++++++|.+
T Consensus 463 ~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 463 CLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred EeecchhhheeeecCCCce
Confidence 222 23889999999885
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=86.08 E-value=15 Score=35.25 Aligned_cols=128 Identities=12% Similarity=-0.003 Sum_probs=67.7
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCccccee--eeCCe-EEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAA--TDERR-IYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~--~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
...+..+|..+|+..+..+............... .+++. +++.. . +.-.+|+.++..++++.
T Consensus 209 ~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~--------------~G~~hly~~~~~~~~~~ 273 (353)
T PF00930_consen 209 RLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-R--------------DGYRHLYLYDLDGGKPR 273 (353)
T ss_dssp EEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-T--------------TSSEEEEEEETTSSEEE
T ss_pred EEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-c--------------CCCcEEEEEccccccee
Confidence 3578889999998887776544333321111111 13333 33332 2 33577999999999877
Q ss_pred eeecCCCCCCCCcceEEe--CCEEEEeeec---CCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEe
Q 040693 291 WSTADPSNGTAPGPVTVA--NGVLFGGSTY---RQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGN 358 (382)
Q Consensus 291 W~~~~~~~~~~~~~~~~~--~~~v~~~~~~---~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~ 358 (382)
+-+..... ....+.++ ++.||..+.. ..-.||.++.+++..+-++........++.+ .+++.|+-+
T Consensus 274 ~lT~G~~~--V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 274 QLTSGDWE--VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDT 345 (353)
T ss_dssp ESS-SSS---EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEE
T ss_pred ccccCcee--ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEE
Confidence 55554321 11233333 4677776641 1336999998834444444433322223433 345555543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.88 E-value=42 Score=34.27 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCC-CcEeEEEecCCceecceEE---e
Q 040693 275 IAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKT-GKILWSYDTGATIYGGASV---S 350 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~t-G~ilw~~~~~~~~~~~p~~---~ 350 (382)
..+.++..+..+|+.+-..-.-.+........-.++.+++++. +..|.-++.++ +-++-...-.. .....++ .
T Consensus 352 s~g~L~van~stG~~v~sv~q~Rg~nit~~~~d~~g~lWlgs~--q~GLsrl~n~n~~avlde~agl~-ss~V~aived~ 428 (671)
T COG3292 352 SIGELMVANGSTGELVRSVHQLRGMNITTTLEDSRGRLWLGSM--QNGLSRLDNKNEWAVLDEDAGLP-SSEVSAIVEDP 428 (671)
T ss_pred ccceEEEecCCCCcEEEEeeeccccccchhhhccCCcEEEEec--ccchhhhccCCcccccccccCCc-ccceeeeeecC
Confidence 3467889999999877664322211122222223678999885 55666677665 33332221111 1111112 4
Q ss_pred CCEEEEEeCcee
Q 040693 351 NGCIYMGNGYKV 362 (382)
Q Consensus 351 ~g~lyv~~~~g~ 362 (382)
++.|.+++++|.
T Consensus 429 dnsLWIGTs~Gl 440 (671)
T COG3292 429 DNSLWIGTSGGL 440 (671)
T ss_pred CCCEEEeccCCe
Confidence 577999988866
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.70 E-value=40 Score=34.76 Aligned_cols=108 Identities=16% Similarity=0.188 Sum_probs=61.4
Q ss_pred ecEEEEEccCcEEEEEeCCCCC--eeeeeccCCCC-CC-CC--cccceee-eCCeEEEEecCccccccccCCCCCCCCCc
Q 040693 205 HDIVVAVQKSGFAWALDRDSGS--LIWSMEAGPGG-LG-GG--AMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAG 277 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~--~~W~~~~~~~~-~~-g~--~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g 277 (382)
+.++..++-|..++.+|..+|. +.-+++.-+.. .. |. +.+..+. ..+.++++. ...+
T Consensus 130 ~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG----------------gtek 193 (735)
T KOG0308|consen 130 NELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG----------------GTEK 193 (735)
T ss_pred ceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec----------------Cccc
Confidence 5666677789999999999883 33333321111 11 11 2233222 334455542 2235
Q ss_pred eEEEEECCCCcEEeeecCCCCCCCCcceEE-e-CCEEEEeeecCCCcEEEEeCCCCc
Q 040693 278 GWVAMDASNGNVLWSTADPSNGTAPGPVTV-A-NGVLFGGSTYRQGPIYAMDVKTGK 332 (382)
Q Consensus 278 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~g~l~~ld~~tG~ 332 (382)
-+..+|++|++.+=+...... ....+.+ + +.+++-++. +|.|...|+..-+
T Consensus 194 ~lr~wDprt~~kimkLrGHTd--NVr~ll~~dDGt~~ls~sS--DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 194 DLRLWDPRTCKKIMKLRGHTD--NVRVLLVNDDGTRLLSASS--DGTIRLWDLGQQR 246 (735)
T ss_pred ceEEeccccccceeeeecccc--ceEEEEEcCCCCeEeecCC--CceEEeeeccccc
Confidence 689999999998877664431 2223333 2 346776664 8888888875433
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.65 E-value=33 Score=32.47 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=30.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATG 108 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~ 108 (382)
+.-|+.+|+-||+++-+++.-... .++-+. -+..+.+++..||.+..
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~----de~taA----hsL~Fs~DGeqlfaGyk 178 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQ----DEYTAA----HSLQFSPDGEQLFAGYK 178 (406)
T ss_pred cCceeeeeccccccccchhhhhhH----Hhhhhh----eeEEecCCCCeEeeccc
Confidence 446888999999999998763221 112111 14567778888888653
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.93 E-value=41 Score=34.02 Aligned_cols=109 Identities=9% Similarity=-0.013 Sum_probs=72.4
Q ss_pred CCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEE
Q 040693 140 NHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219 (382)
Q Consensus 140 ~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~a 219 (382)
++.|.|..++..-|++-|+......+. ++.... ++..-+.|+..+.+..+.-
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h~~--------------------------~v~~~~--~~~~~~ciyS~~ad~~v~~ 128 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKHYG--------------------------NVNEIL--DAQRLGCIYSVGADLKVVY 128 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCCCC--------------------------cceeee--cccccCceEecCCceeEEE
Confidence 345999999999999999998665421 111100 0112467888888999999
Q ss_pred EeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCC
Q 040693 220 LDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN 298 (382)
Q Consensus 220 ld~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~ 298 (382)
++.++++.+-.....++. .....+.-|+.++.+. ++.|..+|++++|++=++.....
T Consensus 129 ~~~~~~~~~~~~~~~~~~---~~sl~is~D~~~l~~a-------------------s~~ik~~~~~~kevv~~ftgh~s 185 (541)
T KOG4547|consen 129 ILEKEKVIIRIWKEQKPL---VSSLCISPDGKILLTA-------------------SRQIKVLDIETKEVVITFTGHGS 185 (541)
T ss_pred EecccceeeeeeccCCCc---cceEEEcCCCCEEEec-------------------cceEEEEEccCceEEEEecCCCc
Confidence 999999877665544321 1222222255555543 36699999999999988886653
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=84.81 E-value=3.1 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=27.0
Q ss_pred eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 308 ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 308 ~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
+++.+|++.. ..+.|..||+++++++-+.+++.
T Consensus 2 d~~~lyv~~~-~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 2 DGTKLYVTNS-GSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCEEEEEeC-CCCEEEEEECCCCeEEEEEECCC
Confidence 3567888774 57899999999999999988853
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.69 E-value=21 Score=34.68 Aligned_cols=112 Identities=14% Similarity=0.066 Sum_probs=75.5
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
..++.+..|..|..+|..++++.-..++.. ........ ++..|... ..+.++-.||.
T Consensus 313 ~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-----~vtSl~ls~~g~~lLss-----------------sRDdtl~viDl 370 (459)
T KOG0288|consen 313 SDVISGHFDKKVRFWDIRSADKTRSVPLGG-----RVTSLDLSMDGLELLSS-----------------SRDDTLKVIDL 370 (459)
T ss_pred eeeeecccccceEEEeccCCceeeEeecCc-----ceeeEeeccCCeEEeee-----------------cCCCceeeeec
Confidence 345566778899999999898888887542 22222222 33444443 34578999999
Q ss_pred CCCcEEeeecCCCC---CCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 285 SNGNVLWSTADPSN---GTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 285 ~tG~~~W~~~~~~~---~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
++-++.-.+....- ..+...+... +.+|.+++ .+|.||..+..+||+.-+...+.
T Consensus 371 Rt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS--~dgsv~iW~v~tgKlE~~l~~s~ 429 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS--ADGSVYIWSVFTGKLEKVLSLST 429 (459)
T ss_pred ccccEEEEeeccccccccccceeEECCCCceeeecc--CCCcEEEEEccCceEEEEeccCC
Confidence 99999888765541 1223333223 34666666 49999999999999998887665
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.63 E-value=36 Score=32.38 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=94.5
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
+.+..+|..||+.+=+++..+... +...+.+ .+ +.+.|++++.||.+.++|.
T Consensus 50 gsv~lyd~~tg~~l~~fk~~~~~~------------------------N~vrf~~--~d--s~h~v~s~ssDG~Vr~wD~ 101 (376)
T KOG1188|consen 50 GSVRLYDKGTGQLLEEFKGPPATT------------------------NGVRFIS--CD--SPHGVISCSSDGTVRLWDI 101 (376)
T ss_pred CeEEEEeccchhhhheecCCCCcc------------------------cceEEec--CC--CCCeeEEeccCCeEEEEEe
Confidence 899999999999999988765522 1111111 11 2577889999999999998
Q ss_pred CCCCeeeeeccCCCCCCCCcccceeee-CCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE-eeecCCCCCC
Q 040693 223 DSGSLIWSMEAGPGGLGGGAMWGAATD-ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL-WSTADPSNGT 300 (382)
Q Consensus 223 ~tG~~~W~~~~~~~~~~g~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~-W~~~~~~~~~ 300 (382)
.+-...-.+..... ++.+....... ++.++....+. ......|+.+|.+.-+.. -.+...-..
T Consensus 102 Rs~~e~a~~~~~~~--~~~~f~~ld~nck~~ii~~GtE~------------~~s~A~v~lwDvR~~qq~l~~~~eSH~D- 166 (376)
T KOG1188|consen 102 RSQAESARISWTQQ--SGTPFICLDLNCKKNIIACGTEL------------TRSDASVVLWDVRSEQQLLRQLNESHND- 166 (376)
T ss_pred ecchhhhheeccCC--CCCcceEeeccCcCCeEEecccc------------ccCceEEEEEEeccccchhhhhhhhccC-
Confidence 87544433332211 11122222111 23333332110 122355888888765542 111110001
Q ss_pred CCcceEE---eCCEEEEeeecCCCcEEEEeCCCCcE----eEEEecCCceecceEEeCC--EEEEEeCceeEeecCCccC
Q 040693 301 APGPVTV---ANGVLFGGSTYRQGPIYAMDVKTGKI----LWSYDTGATIYGGASVSNG--CIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 301 ~~~~~~~---~~~~v~~~~~~~~g~l~~ld~~tG~i----lw~~~~~~~~~~~p~~~~g--~lyv~~~~g~~~~~~~~~~ 371 (382)
..+.+-+ +.+++.-++. +|.+-.||.+.-.+ +-..+.+..+..---..++ ++|+.+-.+. .++|+++-
T Consensus 167 DVT~lrFHP~~pnlLlSGSv--DGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Et-f~~~ele~ 243 (376)
T KOG1188|consen 167 DVTQLRFHPSDPNLLLSGSV--DGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMET-FAIYELED 243 (376)
T ss_pred cceeEEecCCCCCeEEeecc--cceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCc-eeEEEccC
Confidence 1122222 3467777775 99999999863211 1122222222222223455 7888876644 45666654
|
|
| >smart00108 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
Probab=84.28 E-value=13 Score=29.20 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=16.4
Q ss_pred EEEEccCcEEEEEeCCCCCeeeee
Q 040693 208 VVAVQKSGFAWALDRDSGSLIWSM 231 (382)
Q Consensus 208 v~~~~~~g~l~ald~~tG~~~W~~ 231 (382)
.+.-..+|.++.+|. .|+++|+-
T Consensus 89 ~~~L~ddGnlvl~~~-~~~~~W~S 111 (114)
T smart00108 89 VLVLLDDGNLVIYDS-DGNFLWQS 111 (114)
T ss_pred EEEEeCCCCEEEECC-CCCEEeCC
Confidence 334456788888886 47899974
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.99 E-value=48 Score=32.97 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=66.6
Q ss_pred ecEEEEEccCc--EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSG--FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g--~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
..++++...+| .+|.+|..++. +++...... ......|.+ ++..++..+.. ...-.|+.+
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~g-i~~~Ps~sp--dG~~ivf~Sdr--------------~G~p~I~~~ 311 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFG-INTSPSWSP--DGSKIVFTSDR--------------GGRPQIYLY 311 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCc-ceecccCCc-cccCccCCC--CCCEEEEEeCC--------------CCCcceEEE
Confidence 45556665554 79999988555 666443221 122233433 66666665332 122358999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEeC-CEEEEeeecCCCc--EEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEE
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVAN-GVLFGGSTYRQGP--IYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMG 357 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~--l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~ 357 (382)
|+..++..--+..... .. .|....+ .++.+.+. ..|. +...|+.++.- |+.-.......+|.. .+++.++.
T Consensus 312 ~~~g~~~~riT~~~~~-~~-~p~~SpdG~~i~~~~~-~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~ 386 (425)
T COG0823 312 DLEGSQVTRLTFSGGG-NS-NPVWSPDGDKIVFESS-SGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMF 386 (425)
T ss_pred CCCCCceeEeeccCCC-Cc-CccCCCCCCEEEEEec-cCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEE
Confidence 9888876333332221 22 3333444 44333332 2455 77777777665 555443333344433 44444443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.82 E-value=9.9 Score=35.31 Aligned_cols=110 Identities=18% Similarity=0.325 Sum_probs=66.9
Q ss_pred cEEEEEccCcEEEEEeCCCCCee----eeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCce
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLI----WSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGG 278 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~----W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (382)
..|++...+|.+..++-+.+.+. |+...- ..|.... +-++||.+ ..++.
T Consensus 134 ~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-------E~Wta~f~~~~pnlvytG-----------------gDD~~ 189 (339)
T KOG0280|consen 134 TKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-------EAWTAKFSDKEPNLVYTG-----------------GDDGS 189 (339)
T ss_pred ceEEEEcCCCcEEEEecceeeeeecccccccce-------eeeeeecccCCCceEEec-----------------CCCce
Confidence 44777777777766665544332 322210 2233222 33677776 45689
Q ss_pred EEEEECC-CCcEEeeecCCCCCCCCcceEE-----eCCEEEEeeecCCCcEEEEeCCC-CcEeEEEecCCcee
Q 040693 279 WVAMDAS-NGNVLWSTADPSNGTAPGPVTV-----ANGVLFGGSTYRQGPIYAMDVKT-GKILWSYDTGATIY 344 (382)
Q Consensus 279 v~a~d~~-tG~~~W~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~g~l~~ld~~t-G~ilw~~~~~~~~~ 344 (382)
+.++|.+ .++-+|+....- .++...+ ....++.+++ +..+..+|..+ ||++.+.+++++++
T Consensus 190 l~~~D~R~p~~~i~~n~kvH---~~GV~SI~ss~~~~~~I~TGsY--De~i~~~DtRnm~kPl~~~~v~GGVW 257 (339)
T KOG0280|consen 190 LSCWDIRIPKTFIWHNSKVH---TSGVVSIYSSPPKPTYIATGSY--DECIRVLDTRNMGKPLFKAKVGGGVW 257 (339)
T ss_pred EEEEEecCCcceeeecceee---ecceEEEecCCCCCceEEEecc--ccceeeeehhcccCccccCccccceE
Confidence 9999999 788899854322 1222222 2347888885 89999999884 88877766666543
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.47 E-value=33 Score=31.46 Aligned_cols=140 Identities=12% Similarity=0.075 Sum_probs=85.9
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
.+++.+...+..+..+|..+||..-..+..... --..|.| +++.+.++ ..+..|.-||.
T Consensus 77 ~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en--i~i~wsp--~g~~~~~~-----------------~kdD~it~id~ 135 (313)
T KOG1407|consen 77 PDLFATASGDKTIRIWDIRSGKCTARIETKGEN--INITWSP--DGEYIAVG-----------------NKDDRITFIDA 135 (313)
T ss_pred CcceEEecCCceEEEEEeccCcEEEEeeccCcc--eEEEEcC--CCCEEEEe-----------------cCcccEEEEEe
Confidence 355566667778889999999988877743210 0012222 56666665 45577999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE---eCCEEEEEeCce
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV---SNGCIYMGNGYK 361 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~---~~g~lyv~~~~g 361 (382)
++-+++-+.+++.... ...--..|++.|+.+. .|.+..|..-.-|++-..+.... ....+ -+|+-|...+..
T Consensus 136 r~~~~~~~~~~~~e~n-e~~w~~~nd~Fflt~G--lG~v~ILsypsLkpv~si~AH~s--nCicI~f~p~GryfA~GsAD 210 (313)
T KOG1407|consen 136 RTYKIVNEEQFKFEVN-EISWNNSNDLFFLTNG--LGCVEILSYPSLKPVQSIKAHPS--NCICIEFDPDGRYFATGSAD 210 (313)
T ss_pred cccceeehhcccceee-eeeecCCCCEEEEecC--CceEEEEeccccccccccccCCc--ceEEEEECCCCceEeecccc
Confidence 9999988877766311 1111234566666653 68888888776777766654321 11122 356666666665
Q ss_pred eEeecCCcc
Q 040693 362 VTVGFGNKN 370 (382)
Q Consensus 362 ~~~~~~~~~ 370 (382)
..+.|+.++
T Consensus 211 AlvSLWD~~ 219 (313)
T KOG1407|consen 211 ALVSLWDVD 219 (313)
T ss_pred ceeeccChh
Confidence 667776543
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.94 E-value=33 Score=32.01 Aligned_cols=104 Identities=12% Similarity=0.065 Sum_probs=62.2
Q ss_pred ecEEEEEccCcEEEEEe-CCCCCeeeeeccCCCCCCCCcccc-eeeeCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALD-RDSGSLIWSMEAGPGGLGGGAMWG-AATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald-~~tG~~~W~~~~~~~~~~g~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..+..++.|..++..+ ..+-+..|..+.- ++..+-. ...++..||.. ..+.+|+.+
T Consensus 59 gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgH----sgAVM~l~~~~d~s~i~S~-----------------gtDk~v~~w 117 (338)
T KOG0265|consen 59 GSCFASGGSDRAIVLWNVYGDCENFWVLKGH----SGAVMELHGMRDGSHILSC-----------------GTDKTVRGW 117 (338)
T ss_pred CCeEeecCCcceEEEEeccccccceeeeccc----cceeEeeeeccCCCEEEEe-----------------cCCceEEEE
Confidence 35566677788888777 3345566666521 1111111 11156666665 345789999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCC
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKT 330 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~t 330 (382)
|.+||+...+......-...-.+ ..-|...+.+..+++.+...|..+
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p-~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDP-SRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred ecccceeeehhccccceeeecCc-cccCCeEEEecCCCceEEEEeecc
Confidence 99999999888876632222222 223444444444689999999874
|
|
| >PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins | Back alignment and domain information |
|---|
Probab=82.84 E-value=7.2 Score=39.19 Aligned_cols=96 Identities=10% Similarity=0.020 Sum_probs=59.1
Q ss_pred CCCceEEEEECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCC--cEEEEeCCCCcEeEEEecCCceecceEEe
Q 040693 274 TIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGATIYGGASVS 350 (382)
Q Consensus 274 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~~~~~p~~~ 350 (382)
...+.|+.+|+.+|+.+-+..+.. .....+.. .+.+|.++..+..+ .|+.||+.|=++.-+....-...|..++.
T Consensus 372 ~~ls~LvllD~~tg~~l~~S~~~~--Ir~r~~~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~kes~~~i~~~S~l~~~ 449 (489)
T PF05262_consen 372 HYLSELVLLDSDTGDTLKRSPVNG--IRGRTFYEREDDLVAIAGCSGNAAIKLVLIDPETLEVKKESEDEISWQSSLIVD 449 (489)
T ss_pred CcceeEEEEeCCCCceecccccce--eccceeEEcCCCEEEEeccCCchheEEEecCcccceeeeeccccccccCceEEc
Confidence 345889999999999998877755 22333333 44555554321222 47777888888877665544444666668
Q ss_pred CCEEEEEe-CceeEeecCCccC
Q 040693 351 NGCIYMGN-GYKVTVGFGNKNF 371 (382)
Q Consensus 351 ~g~lyv~~-~~g~~~~~~~~~~ 371 (382)
++.+|+.- .....-+|..||.
T Consensus 450 ~~~iyaVv~~~~g~~~L~rF~~ 471 (489)
T PF05262_consen 450 GQMIYAVVKKDNGKWYLGRFDS 471 (489)
T ss_pred CCeEEEEEEcCCCeEEEeecCc
Confidence 88888665 3323233444443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.58 E-value=51 Score=32.24 Aligned_cols=139 Identities=12% Similarity=0.038 Sum_probs=82.4
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+.++..++.|..-...|..||+.+-...--.. ..+.... -++....+. ..+++....|
T Consensus 315 GSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-----~I~~V~fsPNGy~lATg----------------s~Dnt~kVWD 373 (459)
T KOG0272|consen 315 GSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-----EILSVAFSPNGYHLATG----------------SSDNTCKVWD 373 (459)
T ss_pred CceeeccCccchhheeecccCcEEEEeccccc-----ceeeEeECCCceEEeec----------------CCCCcEEEee
Confidence 35666777777777788888887766652111 1111111 234444432 3457788889
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEe--CC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCCc-eecceEEeCCEEEEEeC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVA--NG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT-IYGGASVSNGCIYMGNG 359 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~-~~~~p~~~~g~lyv~~~ 359 (382)
++.-+.+.+++..... .+.+-+. .| .+..++ .++.+-.....++..+-...-..+ +++--+..++..+++++
T Consensus 374 LR~r~~ly~ipAH~nl--VS~Vk~~p~~g~fL~Tas--yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s 449 (459)
T KOG0272|consen 374 LRMRSELYTIPAHSNL--VSQVKYSPQEGYFLVTAS--YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSS 449 (459)
T ss_pred ecccccceecccccch--hhheEecccCCeEEEEcc--cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEec
Confidence 8888887777765532 2222222 23 333344 477777777777777665543333 44444557788888888
Q ss_pred ceeEeecCC
Q 040693 360 YKVTVGFGN 368 (382)
Q Consensus 360 ~g~~~~~~~ 368 (382)
+.+..+++.
T Consensus 450 ~DRT~KLW~ 458 (459)
T KOG0272|consen 450 FDRTIKLWR 458 (459)
T ss_pred cCceeeecc
Confidence 888777653
|
|
| >smart00108 B_lectin Bulb-type mannose-specific lectin | Back alignment and domain information |
|---|
Probab=81.91 E-value=23 Score=27.83 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=16.2
Q ss_pred ccCcEEEEEeCCCCCeeeeecc
Q 040693 212 QKSGFAWALDRDSGSLIWSMEA 233 (382)
Q Consensus 212 ~~~g~l~ald~~tG~~~W~~~~ 233 (382)
..+|.|+.+|.. |+.+|+...
T Consensus 61 ~~dGnLvl~~~~-g~~vW~S~t 81 (114)
T smart00108 61 QSDGNLVLYDGD-GRVVWSSNT 81 (114)
T ss_pred eCCCCEEEEeCC-CCEEEEecc
Confidence 457888888865 899999764
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.76 E-value=63 Score=34.28 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=34.6
Q ss_pred CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc---ee-cceEEeCCEEEEEeCceeE
Q 040693 309 NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT---IY-GGASVSNGCIYMGNGYKVT 363 (382)
Q Consensus 309 ~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~---~~-~~p~~~~g~lyv~~~~g~~ 363 (382)
-+.+|+.- .-.|+.||++=-..+...+++.+ +. --|-.-.+-||+...+|.+
T Consensus 243 rn~lfi~~---prellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~l 298 (1062)
T KOG1912|consen 243 RNILFITF---PRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRL 298 (1062)
T ss_pred hceEEEEe---ccceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeE
Confidence 45666665 67888888886667777777654 11 1233356788888888873
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.42 E-value=35 Score=34.15 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=58.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+.++.....+|.+..+|...-.++..+...-.....+..+.| .+..++++.+ .+.+|..||.
T Consensus 177 r~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsp--sne~l~vsVG----------------~Dkki~~yD~ 238 (673)
T KOG4378|consen 177 RFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSP--SNEALLVSVG----------------YDKKINIYDI 238 (673)
T ss_pred ceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecC--CccceEEEec----------------ccceEEEeec
Confidence 567777888999999998866666555422111111222332 4555666543 3567888998
Q ss_pred CCCcEEeeecCCCCCCCCcceEE-eCCEE-EEeeecCCCcEEEEeCCC
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTV-ANGVL-FGGSTYRQGPIYAMDVKT 330 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~-~~~~v-~~~~~~~~g~l~~ld~~t 330 (382)
...+..=+.....+ .+.+.+ ++|.+ .+++ ..|+|++.|...
T Consensus 239 ~s~~s~~~l~y~~P---lstvaf~~~G~~L~aG~--s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 239 RSQASTDRLTYSHP---LSTVAFSECGTYLCAGN--SKGELIAYDMRS 281 (673)
T ss_pred ccccccceeeecCC---cceeeecCCceEEEeec--CCceEEEEeccc
Confidence 75544333222211 223333 34544 4444 489999999874
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=80.23 E-value=44 Score=33.20 Aligned_cols=122 Identities=13% Similarity=0.069 Sum_probs=63.8
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|.++|+.--..+.+. ..+.+.|.| |+..|.+.... +..-.|+.+|..+++ +++..
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g--~~~~P~fsp--DG~~l~f~~~r--------------dg~~~iy~~dl~~~~-~~~Lt 278 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNG--NNGAPAFSP--DGSKLAFSSSR--------------DGSPDIYLMDLDGKN-LPRLT 278 (425)
T ss_pred ceEEEEeccCCccceeeccCC--ccCCccCCC--CCCEEEEEECC--------------CCCccEEEEcCCCCc-ceecc
Confidence 458888888886554444221 111122222 66666665433 334569999998776 55533
Q ss_pred CCCCCCCCcceEEeCCEEEEeeecCCC--cEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEE
Q 040693 295 DPSNGTAPGPVTVANGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMG 357 (382)
Q Consensus 295 ~~~~~~~~~~~~~~~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~ 357 (382)
........+...-++..++..+. +.| .|+.+|++.+.. -+.....+....|.+ .+|+.++.
T Consensus 279 ~~~gi~~~Ps~spdG~~ivf~Sd-r~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 279 NGFGINTSPSWSPDGSKIVFTSD-RGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred cCCccccCccCCCCCCEEEEEeC-CCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEE
Confidence 22222222233234444444442 344 599999886554 455444444446655 44444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 382 | ||||
| 1kv9_A | 668 | Structure At 1.9 A Resolution Of A Quinohemoprotein | 2e-06 | ||
| 1kb0_A | 677 | Crystal Structure Of Quinohemoprotein Alcohol Dehyd | 5e-06 |
| >pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein Alcohol Dehydrogenase From Pseudomonas Putida Hk5 Length = 668 | Back alignment and structure |
|
| >pdb|1KB0|A Chain A, Crystal Structure Of Quinohemoprotein Alcohol Dehydrogenase From Comamonas Testosteroni Length = 677 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Length = 571 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 72/444 (16%), Positives = 125/444 (28%), Gaps = 139/444 (31%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK+ W+ ++ D +T + K +G S E G+ G++
Sbjct: 129 ALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVR--------GAVNA 180
Query: 60 LDAKTGRILWQTFMLPDNFGKLNE--------------------------YAGAAIWGSS 93
D KTG + W+ F + G WG
Sbjct: 181 FDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWG-W 239
Query: 94 PSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTG 153
+ DP N Y +GN P + + ++ DLDTG
Sbjct: 240 YAYDPKLNLFYYGSGN-----------------PAPWNETMRPGDNKWTMTIWGRDLDTG 282
Query: 154 KIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213
W Q +D W D ++ N ++ + +
Sbjct: 283 MAKWGYQKTPHDEW------------------DFAGVNQMVLTDQPVNGKMTPLLSHIDR 324
Query: 214 SGFAWALDRDSGSLIWSMEAGP---------------------------------GGLGG 240
+G + L+R++G+LI + + P G
Sbjct: 325 NGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMG 384
Query: 241 GAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGW--------------------- 279
G + + T A H + +P AG +
Sbjct: 385 FHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMG 444
Query: 280 --VAMDASNGNVLWS--TADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILW 335
A D + G W+ + G G + G+++ + G + A+D K GK LW
Sbjct: 445 QIRAFDLTTGKAKWTKWEKFAAWG---GTLYTKGGLVWYAT--LDGYLKALDNKDGKELW 499
Query: 336 SYDTGATIYGGASVSNGCIYMGNG 359
++ + G Y G
Sbjct: 500 NFKMPSGGIGSPMT-----YSFKG 518
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Length = 571 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 28/136 (20%), Positives = 44/136 (32%), Gaps = 31/136 (22%)
Query: 218 WALD-RDSGSLIWSMEAGPGGLGGGAMW------GAATDERRIYTNIANSQHKNFNLKPS 270
+AL+ D G ++W + M G A +I
Sbjct: 76 YALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKK-------------- 121
Query: 271 KNSTIAGGWVAMDASNGNVLWS--TADPSNG-TAPGPVTVANGVLFGGSTYRQGP----I 323
G +A+DA G + W DP G T VA + G + + +
Sbjct: 122 ---QANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAV 178
Query: 324 YAMDVKTGKILWSYDT 339
A D+KTG++ W
Sbjct: 179 NAFDLKTGELKWRAFA 194
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* Length = 571 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 5e-04
Identities = 34/199 (17%), Positives = 50/199 (25%), Gaps = 39/199 (19%)
Query: 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNK 202
LLALD TGKI W ++ V P + ++
Sbjct: 125 GHLLALDAKTGKINWEVEVCDPKVGST-------LTQAP---------------FVAKDT 162
Query: 203 VKHDIVVAVQK----SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIA 258
V ++ G A D +G L W A + Y
Sbjct: 163 V---LMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSD-DSVRLAKDFNSANPHYGQFG 218
Query: 259 NSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTY 318
GW A D + + +P+ N + G
Sbjct: 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAP---------WNETMRPGDNK 269
Query: 319 RQGPIYAMDVKTGKILWSY 337
I+ D+ TG W Y
Sbjct: 270 WTMTIWGRDLDTGMAKWGY 288
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Length = 668 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 4e-28
Identities = 74/431 (17%), Positives = 139/431 (32%), Gaps = 121/431 (28%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK +W + D A+ + IT + KG +G E G+ +G ++
Sbjct: 131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGV--------RGFVSA 182
Query: 60 LDAKTGRILWQTFMLPDNFGKLNEY-------------------AGAAIWGSSPSIDPIR 100
DA TG++ W+ + +P + E+ G +W S + DP
Sbjct: 183 YDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDS-MAYDPEL 241
Query: 101 NHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160
+ +Y+ TGN +R +N + +S+LA+ DTGK+ W+ Q
Sbjct: 242 DLLYVGTGNGSPWNREVRSPGGGDNL--------------YLSSILAIRPDTGKLAWHYQ 287
Query: 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220
+ D W D + + + + +++ K+GF + L
Sbjct: 288 VTPGDSW------------------DFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329
Query: 221 DRDSGSLIWSMEAG-------------------------------PGGLGGGAMWGAATD 249
DR +G LI + + G P G + +
Sbjct: 330 DRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN 389
Query: 250 ERR--IYTNIANSQHKNFNLKPSKN-------------------STIAGGWVAMDASNGN 288
+Y N + ++G +A D
Sbjct: 390 PGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK 449
Query: 289 VLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS 348
W P++ G ++ A ++F G+ G ++A G+ LW ++ + I
Sbjct: 450 AAWKVPYPTHWNG-GTLSTAGNLVFQGTAA--GQMHAYSADKGEALWQFEAQSGIVAAPM 506
Query: 349 VSNGCIYMGNG 359
+ G
Sbjct: 507 T-----FELAG 512
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Length = 668 | Back alignment and structure |
|---|
Score = 47.3 bits (112), Expect = 5e-06
Identities = 49/293 (16%), Positives = 76/293 (25%), Gaps = 84/293 (28%)
Query: 51 CTFQGSLAKLDAKTGRILWQ-TFMLPDNFGKLNEYA----GAAIWGSSPSIDPIRNHVYI 105
+ +DA +G+ LW+ + + + G A+WG + VY+
Sbjct: 72 SMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWG---------DKVYV 122
Query: 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYD 165
T + L+ALD TGK +W +Q
Sbjct: 123 GTLD---------------------------------GRLIALDAKTGKAIWSQQTTDPA 149
Query: 166 VWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKV-KHDIVVAVQKSGFAWALDRDS 224
Y P + + KV + GF A D D+
Sbjct: 150 ------KPYSITGAPR----------------VVKGKVIIGNGGAEYGVRGFVSAYDADT 187
Query: 225 GSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284
G L W PG + A + +A D
Sbjct: 188 GKLAWRFYTVPGDPALPYEHPELRE--------AAKTWQGDQYWKLGGGGTVWDSMAYDP 239
Query: 285 SNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSY 337
+ T + S L+ S I A+ TGK+ W Y
Sbjct: 240 ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSS------ILAIRPDTGKLAWHY 286
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 Length = 668 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 12/109 (11%)
Query: 280 VAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQ--------GPIYAMDVKTG 331
+A+DA++G LW DP + + V G + + G + A+D KTG
Sbjct: 79 IAVDAASGKELWRY-DPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTG 137
Query: 332 KILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380
K +WS T + + G KV +G G + + A+
Sbjct: 138 KAIWSQQTTDPAKPYSITGAPRVVKG---KVIIGNGGAEYGVRGFVSAY 183
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Length = 599 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 6e-27
Identities = 75/447 (16%), Positives = 124/447 (27%), Gaps = 142/447 (31%)
Query: 1 AVKRSNGKLVWKTKLDDHAR-SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ G+ VWK + D S +T++ K +G+S E G+ G L
Sbjct: 135 ALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVR--------GYLTA 186
Query: 60 LDAKTGRILWQTFMLPDNFGKLNEYA--------------------------GAAIWGSS 93
D KTG +W+ + + L G WG
Sbjct: 187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGW- 245
Query: 94 PSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTG 153
+ DP N +Y TGN P + + ++ D DTG
Sbjct: 246 YAYDPGTNLIYFGTGN-----------------PAPWNETMRPGDNKWTMTIFGRDADTG 288
Query: 154 KIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMY-RNKVKHDIVVAVQ 212
+ + Q +D W D M+ ++ ++
Sbjct: 289 EAKFGYQKTPHDEW------------------DYAGVNVMMLSEQKDKDGKARKLLTHPD 330
Query: 213 KSGFAWALDRDSGSLIWSME----------------------------------AGPGGL 238
++G + LDR G+L+ + + P +
Sbjct: 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAM 390
Query: 239 GGGAMWGAATDERR-------------------IYTNIANSQHKNFNLKPS-----KNST 274
G + D +R Y N+ P +N
Sbjct: 391 GYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYE 450
Query: 275 IAGGWVAMDASNGNVLWS--TADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGK 332
G A +A G+ W G G + A ++F G+ G + A D TG
Sbjct: 451 GLGQIKAYNAITGDYKWEKMERFAVWG---GTMATAGDLVFYGTL--DGYLKARDSDTGD 505
Query: 333 ILWSYDTGATIYGGASVSNGCIYMGNG 359
+LW + + G Y G
Sbjct: 506 LLWKFKIPSGAIGYPMT-----YTHKG 527
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Length = 599 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 8e-07
Identities = 25/131 (19%), Positives = 43/131 (32%), Gaps = 13/131 (9%)
Query: 218 WALD-RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIA 276
+AL D G+++W + +A + +
Sbjct: 76 FALGLDDPGTILWQDKPKQNPAARAVACCDLV-----NRGLAYWPGDGKTPALILKTQLD 130
Query: 277 GGWVAMDASNGNVLWS--TADPSNG-TAPGPVTVANGVLFGGSTYRQ----GPIYAMDVK 329
G A++A G +W +D G T V + GS+ + G + A DVK
Sbjct: 131 GNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVK 190
Query: 330 TGKILWSYDTG 340
TG+ +W
Sbjct: 191 TGEQVWRAYAT 201
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* Length = 599 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 9e-05
Identities = 39/252 (15%), Positives = 68/252 (26%), Gaps = 78/252 (30%)
Query: 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNK 202
++ AL+ +TG+ VW + V AP +
Sbjct: 131 GNVAALNAETGETVWKVENSDIKVGSTLTI-------------------APYV------- 164
Query: 203 VKHDIVVAVQ-----KSGFAWALDRDSGSLIWSMEAGPGG-------------------- 237
VK +++ G+ A D +G +W A
Sbjct: 165 VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG 224
Query: 238 ------------LGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282
+GGG WG IY N N ++P N +
Sbjct: 225 LGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF-GR 283
Query: 283 DASNGNVLW----STADPSNGTAPGPVTVANGVLFGGSTY-------RQGPIYAMDVKTG 331
DA G + + D + + ++ G R G +Y +D G
Sbjct: 284 DADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDG 343
Query: 332 KILWSYDTGATI 343
++ + T+
Sbjct: 344 ALVSANKLDDTV 355
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Length = 677 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 4e-26
Identities = 88/465 (18%), Positives = 140/465 (30%), Gaps = 128/465 (27%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF--ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLA 58
A+ + GK VW + + IT + +KG +G E G +G +
Sbjct: 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYG--------VRGYIT 193
Query: 59 KLDAKTGRILWQTFMLPDNFGKLNE-------------------YAGAAIWGSSPSIDPI 99
DA+TG W+ F +P + K E G S + D
Sbjct: 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE 253
Query: 100 RNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159
N +Y+ TGN +R + +N + S++ALD DTGK W+
Sbjct: 254 LNTMYVGTGNGSPWSHKVRSPKGGDNL--------------YLASIVALDPDTGKYKWHY 299
Query: 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219
Q D W D + ++ + +++ K+GF +
Sbjct: 300 QETPGDNW------------------DYTSTQPMILADIKIAGKPRKVILHAPKNGFFFV 341
Query: 220 LDRDSGSLIWSMEAGPG-----------------------------GLGGGAMWGAATDE 250
LDR +G I + P G G W +
Sbjct: 342 LDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN 401
Query: 251 RRIYTNIANSQHKNFNLKPSK-----------------------------NSTIAGGWVA 281
+ +Q+ NL K S G +A
Sbjct: 402 PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLA 461
Query: 282 MDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341
D WS S G +T A V+F G+ G + A TG+ LW TG
Sbjct: 462 WDPVAQKAAWSVEHVSPWNG-GTLTTAGNVVFQGT--ADGRLVAYHAATGEKLWEAPTGT 518
Query: 342 TIYGGAS--VSNG----CIYMGNGYKVTVGFGNKNFTSGTSLYAF 380
+ S + +G + +G G + ++Y F
Sbjct: 519 GVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTF 563
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 Length = 677 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 4e-06
Identities = 46/293 (15%), Positives = 79/293 (26%), Gaps = 82/293 (27%)
Query: 51 CTFQGSLAKLDAKTGRILWQ-TFMLPDNFGKLNEYA----GAAIWGSSPSIDPIRNHVYI 105
+ +D +TG +W + + G G A+W VY+
Sbjct: 83 SASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWK---------GKVYV 133
Query: 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYD 165
+ L+ALD TGK VW++
Sbjct: 134 GAWD---------------------------------GRLIALDAATGKEVWHQNTFEGQ 160
Query: 166 VWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKV-KHDIVVAVQKSGFAWALDRDS 224
L P +++ KV + G+ A D ++
Sbjct: 161 ------KGSLTITGAP---------------RVFKGKVIIGNGGAEYGVRGYITAYDAET 199
Query: 225 GSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284
G W + PG + + +R T + + + ++ DA
Sbjct: 200 GERKWRWFSVPG--DPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTF-----DA 252
Query: 285 SNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSY 337
+ T + S + L+ S I A+D TGK W Y
Sbjct: 253 ELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS------IVALDPDTGKYKWHY 299
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Length = 582 | Back alignment and structure |
|---|
Score = 99.3 bits (247), Expect = 7e-23
Identities = 79/451 (17%), Positives = 128/451 (28%), Gaps = 133/451 (29%)
Query: 1 AVKRSNGKLVWKTKLDDHAR-SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ ++ GK+VWK K DH +T + T K I E G L
Sbjct: 131 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEF--GVVGRLFA 188
Query: 60 LDAKTGRILWQTFMLPDNFGKLNE-----------------------------YAGAAIW 90
D TG +W + + G+LN + G A W
Sbjct: 189 RDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPW 248
Query: 91 GSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDL 150
S S D N + + GN R T + +++ + +D
Sbjct: 249 QS-ASFDAETNTIIVGAGNPGPWNTWAR---------TAKGGNPHDYDSLYTSGQVGVDP 298
Query: 151 DTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSM-YRNKVKHDIVV 209
+G++ W+ Q D W D ++ ++
Sbjct: 299 SSGEVKWFYQHTPNDAW------------------DFSGNNELVLFDYKAKDGKIVKATA 340
Query: 210 AVQKSGFAWALDRDSGSLIW--------------SMEAG--------------------- 234
++GF + +DR +G L ++ G
Sbjct: 341 HADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGK 400
Query: 235 -----PGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGW---------- 279
P LGG A + + H + + S G
Sbjct: 401 AVEVSPPFLGGKNWNPMAYSQDTGLF-YVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKR 459
Query: 280 ---------VAMDASNGNVLWS--TADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDV 328
AMD +G V+W P G + A ++F G+ G A D
Sbjct: 460 MYDDHVGSLRAMDPVSGKVVWEHKEHLPLWA---GVLATAGNLVFTGT--GDGYFKAFDA 514
Query: 329 KTGKILWSYDTGATIYGGASVSNGCIYMGNG 359
K+GK LW + TG+ I + +G
Sbjct: 515 KSGKELWKFQTGSGIVSPPIT-----WEQDG 540
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 Length = 582 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 7e-07
Identities = 46/296 (15%), Positives = 85/296 (28%), Gaps = 67/296 (22%)
Query: 51 CTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110
L LDAKTG+ LW +L + + + V+ T +
Sbjct: 74 TASYSRLFALDAKTGKRLWT------YNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTLD- 126
Query: 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGA 170
S++AL+ +TGK+VW K+ + +
Sbjct: 127 --------------------------------ASVVALNKNTGKVVWKKKFADHGAGYT- 153
Query: 171 CNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWS 230
P D G+ ++ + G +A D D+G IW
Sbjct: 154 ------MTGAPTIVKDGKTGKVLLIHGSSGD--------EFGVVGRLFARDPDTGEEIWM 199
Query: 231 MEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM--DASNGN 288
G +G + + + ++ S + W + DA
Sbjct: 200 RPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNT 259
Query: 289 VLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIY-----AMDVKTGKILWSYDT 339
++ +P P GG+ + +Y +D +G++ W Y
Sbjct: 260 IIVGAGNPG------PWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQH 309
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 1e-20
Identities = 50/363 (13%), Positives = 94/363 (25%), Gaps = 115/363 (31%)
Query: 6 NGKLVWKTKLDD-HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKT 64
W T + + + Y + G + L+A
Sbjct: 27 TPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRA--------------GLVKALNADD 72
Query: 65 GRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEEN 124
G+ +W + + E A ++ HVYI +
Sbjct: 73 GKEIWSVSLAEKDGWFSKEPALL---SGGVTVS--GGHVYIGSEK--------------- 112
Query: 125 NQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPS 184
+ AL+ G + W ++ G
Sbjct: 113 ------------------AQVYALNTSDGTVAWQTKVAG----------------EALSR 138
Query: 185 PDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMW 244
P V +V+ +G AL+ G++ W++ L
Sbjct: 139 P----------------VVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGES 182
Query: 245 GAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS--TADPSNGTAP 302
T N G A+ G ++W + + T
Sbjct: 183 APTTAFGAAVVGGDN-----------------GRVSAVLMEQGQMIWQQRISQATGSTEI 225
Query: 303 -------GPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIY 355
V NGV+F + G + A+D+++G+I+W + G+ V IY
Sbjct: 226 DRLSDVDTTPVVVNGVVFALA--YNGNLTALDLRSGQIMWKRELGS--VNDFIVDGNRIY 281
Query: 356 MGN 358
+ +
Sbjct: 282 LVD 284
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-20
Identities = 62/383 (16%), Positives = 121/383 (31%), Gaps = 108/383 (28%)
Query: 1 AVKRSNGKLVWKTKLDDHARSF------ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQ 54
A+ +GK +W L + F ++ T G Y+G+
Sbjct: 67 ALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-------------- 112
Query: 55 GSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIAT--GNLYS 112
+ L+ G + WQT S P + V I T G L +
Sbjct: 113 AQVYALNTSDGTVAWQT------------KVAGEAL-SRPVVS--DGLVLIHTSNGQLQA 157
Query: 113 V----------------PLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIV 156
+ L +R ++ PT+ + + A+ ++ G+++
Sbjct: 158 LNEADGAVKWTVNLDMPSLSLR------GESAPTTAFGAAVVGGDNGRVSAVLMEQGQMI 211
Query: 157 WYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGF 216
W +++ G + + V + +V A+ +G
Sbjct: 212 WQQRISQ----------------ATGSTEIDRLSDVDTTPV-----VVNGVVFALAYNGN 250
Query: 217 AWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIA 276
ALD SG ++W E G D RIY +N +
Sbjct: 251 LTALDLRSGQIMWKRELGSVN-------DFIVDGNRIYL-------------VDQNDRV- 289
Query: 277 GGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWS 336
+A+ G LW+ +D + PV + NG L G + +G ++ ++V+ G+ +
Sbjct: 290 ---MALTIDGGVTLWTQSDLLHRLLTSPV-LYNGNLVVGDS--EGYLHWINVEDGRFVAQ 343
Query: 337 YDT-GATIYGGASVSNGCIYMGN 358
+ ++G + +
Sbjct: 344 QKVDSSGFQTEPVAADGKLLIQA 366
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A Length = 376 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 2e-10
Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 27/144 (18%)
Query: 224 SGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283
+ + WS G G + A + +Y + AG A++
Sbjct: 27 TPTTAWSTSVGSGIGNFYSNLHPALADNVVYA-----------------ADRAGLVKALN 69
Query: 284 ASNGNVLWST--------ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILW 335
A +G +WS G VTV+ G ++ GS +YA++ G + W
Sbjct: 70 ADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK--AQVYALNTSDGTVAW 127
Query: 336 SYDTGATIYGGASVSNGCIYMGNG 359
VS+G + +
Sbjct: 128 QTKVAGEALSRPVVSDGLVLIHTS 151
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Length = 689 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 7e-20
Identities = 62/393 (15%), Positives = 109/393 (27%), Gaps = 82/393 (20%)
Query: 1 AVKRSNGKLVWKTKL--DDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLA 58
A+ G+ W D IT + G +G E G +G +
Sbjct: 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFG--------VRGYVT 186
Query: 59 KLDAKTGRILWQTFMLPDNFGKLNEYA-------------------GAAIWGSSPSIDPI 99
DA+TG+ W+ + +P + E G W S + DP
Sbjct: 187 AYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDS-FAYDPE 245
Query: 100 RNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159
N +YI GN R + +N +S++A++ DTG+ VW+
Sbjct: 246 LNLLYIGVGNGSLWDPKWRSQAKGDNL--------------FLSSIVAVNADTGEYVWHY 291
Query: 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219
Q D W D + ++ + + +++ K+GF +
Sbjct: 292 QTTPGDAW------------------DYTATQHMILAELPIDGKPRKVLMQAPKNGFFYV 333
Query: 220 LDRDSGSLIWS-MEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPS-------- 270
+DR +G L+ + G M + +N
Sbjct: 334 IDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQP 393
Query: 271 -----------KNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYR 319
+ I + + G G + L +
Sbjct: 394 MSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSW 453
Query: 320 QGPIYAMDVKTGKILWSYDTGATIYGGASVSNG 352
G + A D + W GG + G
Sbjct: 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAG 486
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Length = 689 | Back alignment and structure |
|---|
Score = 45.4 bits (107), Expect = 2e-05
Identities = 50/330 (15%), Positives = 88/330 (26%), Gaps = 107/330 (32%)
Query: 51 CTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110
+ LDA+ GR++W+ D + A + + + VY+ +
Sbjct: 76 TGPFSVVYALDARDGRLIWKY----DPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLD- 130
Query: 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGA 170
L A+D TG+ W
Sbjct: 131 --------------------------------GRLEAIDAKTGQRAWSVDTRA------- 151
Query: 171 CNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ-----KSGFAWALDRDSG 225
AP + V +V+ G+ A D ++G
Sbjct: 152 -----------DHKRSYTITGAPRV-------VNGKVVIGNGGAEFGVRGYVTAYDAETG 193
Query: 226 SLIWSMEAGPG-------------------------GLGGGAMWGAAT---DERRIYTNI 257
W PG GGG W + + +Y +
Sbjct: 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGV 253
Query: 258 ANSQHKN-FNLKPSKNSTI-AGGWVAMDASNGNVLW----STADPSNGTAPGPVTVANGV 311
N + +K + VA++A G +W + D + TA + +A
Sbjct: 254 GNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP 313
Query: 312 LFGGSTY------RQGPIYAMDVKTGKILW 335
+ G + G Y +D TG++L
Sbjct: 314 IDGKPRKVLMQAPKNGFFYVIDRATGELLS 343
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} Length = 689 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 6e-04
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 11/109 (10%)
Query: 280 VAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQ--------GPIYAMDVKTG 331
A+DA +G ++W DP + + V G + ++ G + A+D KTG
Sbjct: 83 YALDARDGRLIWKY-DPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTG 141
Query: 332 KILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380
+ WS DT A +++ + KV +G G F + A+
Sbjct: 142 QRAWSVDTRADHKRSYTITGAPRVVNG--KVVIGNGGAEFGVRGYVTAY 188
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 63.5 bits (154), Expect = 2e-11
Identities = 22/156 (14%), Positives = 50/156 (32%), Gaps = 27/156 (17%)
Query: 203 VKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQH 262
+ ++ G A+ + +GS+ W+++ P +E
Sbjct: 7 LPETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQV-----PTHVEEPAFLP------- 54
Query: 263 KNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG-TAPGPVTVANGVLFGGSTYRQG 321
+ ++ + + N L P ++G+L+ G +Q
Sbjct: 55 ------DPNDGSL----YTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILYMGK--KQD 102
Query: 322 PIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMG 357
Y +D+ TG+ + + S S +Y+G
Sbjct: 103 IWYVIDLLTGEKQQTLSSAFAD--SLSPSTSLLYLG 136
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 2e-10
Identities = 25/227 (11%), Positives = 57/227 (25%), Gaps = 56/227 (24%)
Query: 140 NHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMY 199
SL A+ TG I W + P P
Sbjct: 16 TLDGSLHAVSKRTGSIKWTLKED-----------------PVLQVPTH------------ 46
Query: 200 RNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGL--------GGGAMWGAATDER 251
V+ + G + L + + + L G ++ +
Sbjct: 47 ---VEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRSSDGILY-MGKKQD 102
Query: 252 RIYTNIANS--QHKNFNLKPSKNSTIAGGWV----------AMDASNGNVLWS-TADPSN 298
Y + + + + + + + + + D + W+ T
Sbjct: 103 IWYVIDLLTGEKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYA 162
Query: 299 GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYG 345
+ P F + G + +D ++G +LW + + +
Sbjct: 163 ASLPEDDVDYKMSHFVSN--GDGLVVTVDSESGDVLWIQNYASPVVA 207
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 3e-08
Identities = 47/383 (12%), Positives = 89/383 (23%), Gaps = 80/383 (20%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
AV + G + W K D + + A+ + GSL L
Sbjct: 23 AVSKRTGSIKWTLKEDPVLQV----PTHVEEPAFLPDPND--------------GSLYTL 64
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIAT--GNLYSVPL--- 115
+K L KL + +SP +Y+ Y + L
Sbjct: 65 GSKNNEGLT----------KLPFTIPELVQ-ASPCRSS-DGILYMGKKQDIWYVIDLLTG 112
Query: 116 HIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYL 175
+Q + + + ++ D T ++ W Y
Sbjct: 113 EKQQTLSSAFADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFDYA---------- 162
Query: 176 NPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAG- 234
P D D+ G +D +SG ++W
Sbjct: 163 ----ASLPEDDVDYK---------------MSHFVSNGDGLVVTVDSESGDVLWIQNYAS 203
Query: 235 -------PGGLGGGAMWGAATDERRIYTNIANSQHKNFNLK-------PSKNSTIAGGWV 280
G + + S K ++ + +
Sbjct: 204 PVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYPFPKETEAKSKLTPTL 263
Query: 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQG-PIYAMDVKTGKILWSYDT 339
+ + ++ S + G A P +L G T V T +D
Sbjct: 264 YVGKYSTSLYASPSMVHEGVAVVPRGSTLPLLEGPQTDGVTIGDKGESVITPSTDVKFDP 323
Query: 340 GATIYGGASVSNGCIYMGNGYKV 362
G + + ++
Sbjct: 324 GLKSKNKLNYLRNYWLLIGHHET 346
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} Length = 369 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 3e-06
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 305 VTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMG 357
VT+ +LF + G ++A+ +TG I W+ + V
Sbjct: 5 VTLPETLLFVST--LDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPD 55
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 58/361 (16%), Positives = 111/361 (30%), Gaps = 104/361 (28%)
Query: 5 SNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKT 64
++G + W K + ++ G Y G+ + ++
Sbjct: 47 TDGSVKWFFKSGEIIECRPSIGKD---GTIYFGS----------------DKVYAINP-D 86
Query: 65 GRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIAT--GNLYSV-----PLHI 117
G W+ AI S +I + +Y+ + G+LY++
Sbjct: 87 GTEKWRF------------DTKKAIV-SDFTIFE--DILYVTSMDGHLYAINTDGTEKWR 131
Query: 118 RQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNP 177
+ ++ T S D I ++ N L A++ D G W +
Sbjct: 132 FKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTEKWRFKTND-------------- 176
Query: 178 NCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG 237
+ D + S +A++ D G+ W+ AG
Sbjct: 177 --AITSAASIG----------------KDGTIYFG-SDKVYAINPD-GTEKWNFYAG--- 213
Query: 238 LGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297
A +++ IY S + + A++ +G W
Sbjct: 214 -YWTVTRPAISEDGTIYV-------------TSLDGHL----YAINP-DGTEKWRFKTGK 254
Query: 298 NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYM 356
+ PV ++ GS G +YA++ G W+++TG+ I + NG IY
Sbjct: 255 RIES-SPVIGNTDTIYFGSY--DGHLYAIN-PDGTEKWNFETGSWIIATPVIDENGTIYF 310
Query: 357 G 357
G
Sbjct: 311 G 311
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 43/355 (12%), Positives = 91/355 (25%), Gaps = 130/355 (36%)
Query: 5 SNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKT 64
++ K+ W+ + + S ++ G Y+G+S+ +L ++
Sbjct: 7 NDCKIKWEFLIGNSIDSSPILAK---NGTIYLGSSN--------------KNLYAINT-D 48
Query: 65 GRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEEN 124
G + W +G I PSI +Y + +Y
Sbjct: 49 GSVKWFF------------KSGEIIE-CRPSIGKDGT-IYFGSDKVY------------- 81
Query: 125 NQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPS 184
A++ D G W
Sbjct: 82 ----------------------AINPD-GTEKWRFDTKK----------------AIVSD 102
Query: 185 PDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMW 244
+ DI+ G +A++ D G+ W +
Sbjct: 103 F----------------TIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYAT---- 141
Query: 245 GAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGP 304
+++ IY ++ +G W ++
Sbjct: 142 PIVSEDGTIYV------------------GSNDNYLYAINPDGTEKWRF-KTNDAITSAA 182
Query: 305 VTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGG-ASVSNGCIYMGN 358
+G ++ GS +YA++ + W++ G A +G IY+ +
Sbjct: 183 SIGKDGTIYFGS----DKVYAINPDGTE-KWNFYAGYWTVTRPAISEDGTIYVTS 232
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 280 VAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339
+ ++ + W ++ + P+ NG ++ GS +YA++ G + W + +
Sbjct: 2 LRGGVNDCKIKWEFLIGNSIDS-SPILAKNGTIYLGS--SNKNLYAIN-TDGSVKWFFKS 57
Query: 340 GATIYGGASV-SNGCIYMGNGY 360
G I S+ +G IY G+
Sbjct: 58 GEIIECRPSIGKDGTIYFGSDK 79
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Length = 330 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 28/137 (20%)
Query: 223 DSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282
+ + W G + IY +N +
Sbjct: 7 NDCKIKWEFLIG-NSIDSSP---ILAKNGTIYLGSSN------------------KNLYA 44
Query: 283 DASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT 342
++G+V W P +G ++ GS +YA++ G W +DT
Sbjct: 45 INTDGSVKWFFKSGEIIEC-RPSIGKDGTIYFGS----DKVYAIN-PDGTEKWRFDTKKA 98
Query: 343 IYGGASVSNGCIYMGNG 359
I ++ +Y+ +
Sbjct: 99 IVSDFTIFEDILYVTSM 115
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} Length = 339 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 4e-07
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 29/160 (18%)
Query: 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNF 265
DI++A G A+DR +G +IWS+E I ++
Sbjct: 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI-----------EIQEPSRLETYETL 59
Query: 266 NLKPSKNSTIAGGWVAMDASNGNVLWS------------TADPSNGTAPGPVTVANGVLF 313
++P + G +A G + V + ++
Sbjct: 60 IIEPFGD----GNIYYFNAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVY 115
Query: 314 GGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGC 353
GS + +Y +++ G+I+ ++ G+ S S C
Sbjct: 116 TGS--MRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDC 153
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} Length = 276 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 2e-05
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 26/181 (14%)
Query: 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGL-----------------GGGAMWGAA 247
++V +++D+ ++W G G M
Sbjct: 5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITRD 64
Query: 248 TDERRIYTNIANSQHKNFNLKPSKNSTIAG----GWVAMDASNGNVLWSTADPSNGTAPG 303
E A + + + P N+ +A + G VL T + P
Sbjct: 65 GRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPH 124
Query: 304 PVTVANGVLFGG----STYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNG 359
G + + + G++L S T + A + NG + G
Sbjct: 125 AQFRQINKNKKGNYLVPLFATSEVREIA-PNGQLLNSVKLSGTPFSSAFLDNGDCLVACG 183
Query: 360 Y 360
Sbjct: 184 D 184
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 100.0 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 100.0 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 100.0 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 100.0 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 100.0 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 100.0 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 100.0 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.97 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 99.97 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 99.96 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 99.96 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.96 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.96 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 99.95 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.9 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.9 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 99.9 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.85 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.83 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 99.81 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.8 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 99.66 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.57 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.55 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.54 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.38 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.36 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.28 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.23 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.2 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.18 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.11 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.11 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.09 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.07 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 99.05 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 99.05 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.04 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.04 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.02 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.01 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.99 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.98 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.97 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.96 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.95 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 98.95 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.94 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 98.92 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.91 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.9 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 98.9 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 98.9 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.9 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 98.86 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.86 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.86 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 98.81 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.81 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.81 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.81 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.8 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.79 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.79 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.79 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.78 | |
| 3hx6_A | 570 | Type 4 fimbrial biogenesis protein PILY1; beta pro | 98.76 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 98.75 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 98.75 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 98.74 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.73 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.73 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.7 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 98.7 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 98.69 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.68 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.67 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 98.67 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 98.67 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.66 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.66 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.64 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.62 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.62 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.61 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.59 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 98.59 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.58 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.57 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 98.54 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.51 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.51 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.5 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 98.49 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.48 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 98.47 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 98.47 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.46 | |
| 3hx6_A | 570 | Type 4 fimbrial biogenesis protein PILY1; beta pro | 98.44 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.43 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 98.42 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 98.41 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.4 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 98.4 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.39 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 98.36 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.35 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.35 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.33 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 98.33 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.3 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.28 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.26 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 98.26 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 98.26 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 98.25 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 98.25 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.23 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.22 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.2 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.2 | |
| 2zux_A | 591 | YESW protein; beta-propeller, lyase, rhamnose comp | 98.19 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.18 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 98.17 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 98.17 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 98.17 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.16 | |
| 2zuy_A | 620 | YESX protein; beta-propeller, lyase; 1.65A {Bacill | 98.14 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 98.14 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.13 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 98.12 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.12 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.11 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 98.1 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.1 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 98.1 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.09 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 98.08 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.07 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 98.07 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 98.07 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.07 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.07 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 98.06 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 98.05 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 98.05 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 98.04 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 98.04 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 98.04 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.03 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 98.03 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.02 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 98.02 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 98.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.99 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 97.98 | |
| 2zux_A | 591 | YESW protein; beta-propeller, lyase, rhamnose comp | 97.98 | |
| 2zuy_A | 620 | YESX protein; beta-propeller, lyase; 1.65A {Bacill | 97.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 97.95 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.95 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.94 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 97.94 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 97.93 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.92 | |
| 3elq_A | 571 | Arylsulfate sulfotransferase; beta propeller, prot | 97.92 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.92 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.91 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.9 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.9 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.89 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.87 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.85 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.85 | |
| 3elq_A | 571 | Arylsulfate sulfotransferase; beta propeller, prot | 97.85 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 97.84 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 97.82 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.8 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.8 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.79 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 97.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.76 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.75 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 97.74 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 97.73 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.73 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.72 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 97.7 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 97.68 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 97.66 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 97.65 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 97.65 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.61 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 97.59 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 97.59 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.58 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 97.55 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.55 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.55 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 97.53 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 97.53 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.53 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.53 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.52 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.51 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 97.5 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 97.5 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.5 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.48 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.47 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.47 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.46 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 97.44 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.43 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.43 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.43 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 97.42 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.41 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 97.41 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.36 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 97.36 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 97.34 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 97.34 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 97.29 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 97.28 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 97.26 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 97.25 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 97.22 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 97.2 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 97.18 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.17 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 97.17 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 97.16 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.15 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 97.13 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 97.11 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 97.1 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 97.06 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.06 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 97.04 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 97.04 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 97.01 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.01 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 97.01 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 96.99 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.97 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 96.94 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 96.94 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 96.88 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.87 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.87 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.86 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.85 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.82 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.79 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.78 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 96.77 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.75 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 96.75 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.7 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 96.69 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 96.69 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 96.65 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.64 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 96.64 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 96.64 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.62 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 96.57 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 96.56 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 96.53 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.52 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.4 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 96.35 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 96.31 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 96.3 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 96.29 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 96.25 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 96.19 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.17 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 96.14 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.14 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.11 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 96.04 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 96.03 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 96.01 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 96.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 95.72 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 95.72 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 95.72 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 95.51 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 95.43 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.34 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 95.33 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 95.31 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 95.28 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 94.96 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 94.89 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 94.59 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 94.54 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 94.21 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 94.18 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 94.16 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 94.14 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 93.8 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 93.69 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 93.66 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 93.42 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 93.17 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 92.72 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 92.56 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 92.17 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 91.19 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 91.16 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 89.98 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 89.82 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 89.81 | |
| 3mez_B | 113 | Mannose-specific lectin 3 chain 2; heterotetramer, | 89.56 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 89.06 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 89.06 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 87.83 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 87.14 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 83.76 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 83.32 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 82.52 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 82.46 |
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-35 Score=297.31 Aligned_cols=335 Identities=22% Similarity=0.334 Sum_probs=245.0
Q ss_pred CCcCCCCceeeeeecCcC-ccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDH-ARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~-~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
|||++|||++|++++... ....+.++|++.+++||++....+.+. ++.|+|||++||+++|+++..+....
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~--------~g~v~A~D~~TG~~~W~~~~~~~~~~ 206 (599)
T 1w6s_A 135 ALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGV--------RGYLTAYDVKTGEQVWRAYATGPDKD 206 (599)
T ss_dssp EEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTC--------CCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred EEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCC--------CCeEEEEECCCCcEEEEEcCCCCccc
Confidence 689999999999987542 123577899999999999886544332 78999999999999999997543200
Q ss_pred --------------------------CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 80 --------------------------KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 80 --------------------------~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
......++++|. .+++|+..++||+++++...+. ..
T Consensus 207 ~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~-~~a~d~~~g~vy~g~g~~~p~~-----------------~~ 268 (599)
T 1w6s_A 207 LLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWG-WYAYDPGTNLIYFGTGNPAPWN-----------------ET 268 (599)
T ss_dssp HTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCS-CCEEETTTTEEEEECCCCSCSC-----------------GG
T ss_pred cccccccccccccccccccccccCCCcceecCCCcccc-ceeEeCCCCEEEEeCCCCcccc-----------------Cc
Confidence 001124667786 6899999999999998742211 11
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEee-eCceeecEEEEEc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMY-RNKVKHDIVVAVQ 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~~~~v~~~~ 212 (382)
.|..++.+.+.|+|||++||+++|+++....+.| +++..++|++.+.. .+|.....++.++
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~w------------------d~d~~~~p~l~d~~~~~G~~~~~v~~~~ 330 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW------------------DYAGVNVMMLSEQKDKDGKARKLLTHPD 330 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS------------------CCCCCCCCEEEEEECTTSCEEEEEEEEC
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccc------------------cccCCCccEEEeccccCCcEEEEEEEEC
Confidence 2233455668999999999999999999988877 44566899998764 4554446788899
Q ss_pred cCcEEEEEeCCCCCeeeeeccCCC---------------------------------CCCCCcccceee---eCCeEEEE
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGPG---------------------------------GLGGGAMWGAAT---DERRIYTN 256 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~~---------------------------------~~~g~~~~~~~~---~~~~v~~~ 256 (382)
.+|.+++||++||+++|+.+..+. ...|...|+++. +.+++|+.
T Consensus 331 ~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~ 410 (599)
T 1w6s_A 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG 410 (599)
T ss_dssp TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred CCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEe
Confidence 999999999999999999875420 123444555443 46788887
Q ss_pred ecCcc------------ccccc-----cC--CCC-C--CCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEE
Q 040693 257 IANSQ------------HKNFN-----LK--PSK-N--STIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFG 314 (382)
Q Consensus 257 ~~~~~------------~~~~~-----~~--~~~-~--~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~ 314 (382)
..+.. +..+. +. |.. . ....+.|+|+|++|||++|+.+.+. ....+++...+++||+
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~~~tagg~vf~ 489 (599)
T 1w6s_A 411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFY 489 (599)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEE
T ss_pred ccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC-CccCcceEecCCEEEE
Confidence 54311 11111 11 111 0 0135889999999999999998654 3456778788999999
Q ss_pred eeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEe--e--c---C----------------Cc
Q 040693 315 GSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTV--G--F---G----------------NK 369 (382)
Q Consensus 315 ~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~--~--~---~----------------~~ 369 (382)
++. ++.|+|||++||+++|+++++.++.++|++ .+|++||....|.-. + + + ..
T Consensus 490 gt~--dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (599)
T 1w6s_A 490 GTL--DGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLAN 567 (599)
T ss_dssp ECT--TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTTTHHHHHTCCCTTCGGGHHHHTTTGGG
T ss_pred ECC--CCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEEEEEccCCccccccccccccccccccccccccccccc
Confidence 884 999999999999999999999999999998 899999987766311 0 0 0 11
Q ss_pred cCCCCCeEEEEEC
Q 040693 370 NFTSGTSLYAFCV 382 (382)
Q Consensus 370 ~~~~g~~l~~~~~ 382 (382)
.++.|..|++|.|
T Consensus 568 ~~~~g~~~~~f~l 580 (599)
T 1w6s_A 568 YTQMGGGVVVFSL 580 (599)
T ss_dssp TCCCCCEEEEEEE
T ss_pred ccCCCCEEEEEEc
Confidence 2577999999986
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=294.20 Aligned_cols=342 Identities=23% Similarity=0.379 Sum_probs=242.4
Q ss_pred CCcCCCCceeeeeecCcCc-cceeeeceEEEcC------EEEEeccCccccccccccccccceEEEEeCccCceeeeeec
Q 040693 1 AVKRSNGKLVWKTKLDDHA-RSFITMSGTYYKG------AYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFM 73 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~-~~~~~~~p~v~~~------~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~ 73 (382)
|||++|||++|++++.... ...+.++|++.++ +||++....+++. ++.|+|||++||+++|+.+.
T Consensus 131 AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~--------~g~v~alD~~tG~~~W~~~~ 202 (582)
T 1flg_A 131 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGV--------VGRLFARDPDTGEEIWMRPF 202 (582)
T ss_dssp EEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCC--------BCEEEEECTTTCCEEEEEES
T ss_pred EEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCC--------CCEEEEEECCCCCEEeecCC
Confidence 6899999999999986422 2346789999999 9999876544332 78999999999999999865
Q ss_pred cCCCC--------------C-C--------------CCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhccccc
Q 040693 74 LPDNF--------------G-K--------------LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEEN 124 (382)
Q Consensus 74 ~~~~~--------------~-~--------------~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~ 124 (382)
..... . . .....|+..|. ++++|++.++||+++++...+...
T Consensus 203 ~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~-~~a~d~~~g~vyv~~gn~~~~~~~-------- 273 (582)
T 1flg_A 203 VEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ-SASFDAETNTIIVGAGNPGPWNTW-------- 273 (582)
T ss_dssp STTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS-CCEEETTTTEEEEEECCBSSSCGG--------
T ss_pred CccccccccCcccccccccccccCCCccccccccccccccCCccccC-CceEcCCCCEEEEeCCCCCcccCc--------
Confidence 31100 0 0 01124777885 699999999999999874211100
Q ss_pred CCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEee-eCce
Q 040693 125 NQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMY-RNKV 203 (382)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~ 203 (382)
.++.+. ...++.++.+.+.|+|||++||+++|+++....+.|. ++..++|++.+.. .+|.
T Consensus 274 ~r~~~g-g~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd------------------~~~~~~p~l~~~~~~~G~ 334 (582)
T 1flg_A 274 ARTAKG-GNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWD------------------FSGNNELVLFDYKAKDGK 334 (582)
T ss_dssp GGSCTT-SCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSC------------------CCCCCCCEEEEEECSSSC
T ss_pred ccccCC-CcccccCCcccceEEEEeCCCCCEEEEEeCCCCCccc------------------ccCCCCcEEEeeecCCCC
Confidence 010000 0001124556689999999999999999998777663 3445789998654 4554
Q ss_pred eecEEEEEccCcEEEEEeCCCCCeeeeeccCCC---------------------------------------CCCCCccc
Q 040693 204 KHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPG---------------------------------------GLGGGAMW 244 (382)
Q Consensus 204 ~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~---------------------------------------~~~g~~~~ 244 (382)
....|++++.+|.+++||++||+++|+++.... ...|...|
T Consensus 335 ~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w 414 (582)
T 1flg_A 335 IVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNW 414 (582)
T ss_dssp EEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCS
T ss_pred EEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCC
Confidence 446888999999999999999999999876530 11233344
Q ss_pred ceee---eCCeEEEEecCcc------------ccc-----cccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcc
Q 040693 245 GAAT---DERRIYTNIANSQ------------HKN-----FNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGP 304 (382)
Q Consensus 245 ~~~~---~~~~v~~~~~~~~------------~~~-----~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~ 304 (382)
+++. +.+++|+...+.. +.. +.+.|.. ....+.|+|+|++|||++|+.+... ....++
T Consensus 415 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~-~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~g~ 492 (582)
T 1flg_A 415 NPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMY-DDHVGSLRAMDPVSGKVVWEHKEHL-PLWAGV 492 (582)
T ss_dssp SCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESC-SSCSEEEEEECTTTCCEEEEEEESS-CCCSCC
T ss_pred CCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCC-CCCcceEEEEECCCCCEEEEecCCC-CCcccc
Confidence 4433 2478888754310 111 1111111 1235889999999999999998765 345677
Q ss_pred eEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCcee--EeecC-------CccCCC
Q 040693 305 VTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKV--TVGFG-------NKNFTS 373 (382)
Q Consensus 305 ~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~--~~~~~-------~~~~~~ 373 (382)
+...+++||+++. ++.|+|||++|||++|+++++.++.++|++ .+|++||+...|. ...++ .+....
T Consensus 493 ~~tagglvf~g~~--dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G~gg~~~~~~~~~~~~~~~~~~ 570 (582)
T 1flg_A 493 LATAGNLVFTGTG--DGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQ 570 (582)
T ss_dssp EEETTTEEEEECT--TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCC
T ss_pred eEeCCCEEEEECC--CCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEEccCCCcccccccccccccccCCC
Confidence 8888999999884 999999999999999999999999999988 7999999977652 11111 245788
Q ss_pred CCeEEEEEC
Q 040693 374 GTSLYAFCV 382 (382)
Q Consensus 374 g~~l~~~~~ 382 (382)
|..|++|+|
T Consensus 571 g~~~~~f~l 579 (582)
T 1flg_A 571 GGSFWVFKL 579 (582)
T ss_dssp CCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999999987
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=280.59 Aligned_cols=315 Identities=23% Similarity=0.378 Sum_probs=226.7
Q ss_pred CCcCCCCceeeeeecCcCc-cceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHA-RSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~-~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
|||++|||++|++++.... ...+.++|++.+++||++....+.+. ++.|+|||++||+++|+++..+....
T Consensus 129 alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~--------~g~v~a~D~~tG~~~W~~~~~~~~~~ 200 (571)
T 2ad6_A 129 ALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGV--------RGAVNAFDLKTGELKWRAFATGSDDS 200 (571)
T ss_dssp EEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTC--------CCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred EEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCC--------CCEEEEEECCCCcEEEEEccCCCccc
Confidence 6899999999999986422 23567899999999999886544332 68999999999999999987543200
Q ss_pred --------------------------CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 80 --------------------------KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 80 --------------------------~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
......|+.+|. .++++++.++||+++++...+.. .
T Consensus 201 ~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~-~~a~d~~~g~vy~~~g~~~~~~~-----------------~ 262 (571)
T 2ad6_A 201 VRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWG-WYAYDPKLNLFYYGSGNPAPWNE-----------------T 262 (571)
T ss_dssp HTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCS-CCEEETTTTEEEEECCCCSCSCG-----------------G
T ss_pred cccCcccccccccccccccccccCcccceecCCCCeee-eEEEcCCCCeEEEECCCCccccC-----------------C
Confidence 000113455564 57889888999999987321111 0
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
-+..++.+.+.|+|||++||+++|+++....+.| +++..++|++.+...+|.....+++++.
T Consensus 263 ~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~------------------d~~~~~~p~l~~~~~~G~~~~~v~~~~~ 324 (571)
T 2ad6_A 263 MRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEW------------------DFAGVNQMVLTDQPVNGKMTPLLSHIDR 324 (571)
T ss_dssp GSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSS------------------CCCCCCCCEEEEEEETTEEEEEEEEECT
T ss_pred ccCCCceeEEEEEEEecCCCcEEEEecCCCCccc------------------ccccCCCCEEEecccCCcEEEEEEEeCC
Confidence 1112334457899999999999999999877666 3345578999876555543356788999
Q ss_pred CcEEEEEeCCCCCeeeeeccCCC---------------------------------CCCCCcccceee---eCCeEEEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPG---------------------------------GLGGGAMWGAAT---DERRIYTNI 257 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~---------------------------------~~~g~~~~~~~~---~~~~v~~~~ 257 (382)
+|.+++||++||+++|+++.... ...|...|.++. +.+++|+..
T Consensus 325 ~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~ 404 (571)
T 2ad6_A 325 NGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGL 404 (571)
T ss_dssp TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEE
T ss_pred CcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEc
Confidence 99999999999999999876531 112333444433 368899876
Q ss_pred cCc------------cccccc-----cCCCCCC---CCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeee
Q 040693 258 ANS------------QHKNFN-----LKPSKNS---TIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGST 317 (382)
Q Consensus 258 ~~~------------~~~~~~-----~~~~~~~---~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (382)
.+. ++..+. +.|.... ...+.|+|+|++||+++|+++.... ...+++...+++||+++.
T Consensus 405 ~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~-~~~~~~~t~gg~v~~g~~ 483 (571)
T 2ad6_A 405 NHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA-AWGGTLYTKGGLVWYATL 483 (571)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC-CCSBCEEETTTEEEEECT
T ss_pred hhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCC-ccceeEEECCCEEEEEcC
Confidence 531 111111 1111000 2358899999999999999987653 345677778999999874
Q ss_pred cCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCcee
Q 040693 318 YRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKV 362 (382)
Q Consensus 318 ~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~ 362 (382)
++.|++||++||+++|+++++....++|++ .+|++|++...|.
T Consensus 484 --dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~~G~ 528 (571)
T 2ad6_A 484 --DGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGV 528 (571)
T ss_dssp --TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECC
T ss_pred --CCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEECCC
Confidence 899999999999999999999888889988 8999999987665
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=282.35 Aligned_cols=338 Identities=20% Similarity=0.311 Sum_probs=238.7
Q ss_pred CCcCCCCceeeeeecC-c-CccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCC
Q 040693 1 AVKRSNGKLVWKTKLD-D-HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNF 78 (382)
Q Consensus 1 ald~~tGk~~W~~~~~-~-~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~ 78 (382)
|||++|||++|++... + .....+.++|++.+++||++....+.+. ++.|+|||++||+++|+++..+...
T Consensus 135 AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~--------~g~v~a~D~~tG~~~W~~~~~~~~p 206 (689)
T 1yiq_A 135 AIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGV--------RGYVTAYDAETGKEAWRFYTVPGDP 206 (689)
T ss_dssp EEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCC--------BCEEEEEETTTCCEEEEEESSCCCT
T ss_pred EEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCC--------CCEEEEEECCCCcEEEEecccCCCc
Confidence 6899999999999874 2 2234577899999999999876544332 7899999999999999998643211
Q ss_pred CCCC----------C---------CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCC
Q 040693 79 GKLN----------E---------YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPE 139 (382)
Q Consensus 79 ~~~~----------~---------~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (382)
.... . ..|+..|. +++++++.++||+++++...+.... + .|. ..++
T Consensus 207 ~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~-~~~~d~~~~~vy~~~~~g~~w~~~~--------~-~~~-----~gd~ 271 (689)
T 1yiq_A 207 KLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWD-SFAYDPELNLLYIGVGNGSLWDPKW--------R-SQA-----KGDN 271 (689)
T ss_dssp TSCCCSHHHHHHHTTCCSSTHHHHCEECCCCS-CEEEETTTTEEEEECCCEESSCHHH--------H-HTT-----CSCC
T ss_pred ccccccccccccccccCCceeeecCCCCcccc-ceeEcCCCCEEEEeCCCCCccccCC--------C-CCC-----CCCc
Confidence 1000 0 04556675 6899998999999998742111111 1 111 1233
Q ss_pred CCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEE
Q 040693 140 NHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWA 219 (382)
Q Consensus 140 ~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~a 219 (382)
-+.+.|+|||++||+++|+++....+.|. ++..+.|++.++..+|.....|++++.+|.+++
T Consensus 272 ~y~~~v~AlD~~TG~~~W~~~~~~~d~wd------------------~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~ 333 (689)
T 1yiq_A 272 LFLSSIVAVNADTGEYVWHYQTTPGDAWD------------------YTATQHMILAELPIDGKPRKVLMQAPKNGFFYV 333 (689)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCCSC------------------CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEE
T ss_pred eeeeeEEEEEccCCceeEeeecCCccccc------------------ccCCCCcEEEeeccCCcEEEEEEEECCCCeEEE
Confidence 34568999999999999999988776663 334466777777667766678999999999999
Q ss_pred EeCCCCCeeeeeccCC---------------------------------CCCCCCcccceee---eCCeEEEEecCcccc
Q 040693 220 LDRDSGSLIWSMEAGP---------------------------------GGLGGGAMWGAAT---DERRIYTNIANSQHK 263 (382)
Q Consensus 220 ld~~tG~~~W~~~~~~---------------------------------~~~~g~~~~~~~~---~~~~v~~~~~~~~~~ 263 (382)
||++||+++|..+..+ +...|...|++.. +.+++|+...+....
T Consensus 334 lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~ 413 (689)
T 1yiq_A 334 IDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAY 413 (689)
T ss_dssp EETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEE
T ss_pred EECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEecccccee
Confidence 9999999998765432 1122445565443 467888875542110
Q ss_pred c--------cccCCCC--C------------------CCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEe
Q 040693 264 N--------FNLKPSK--N------------------STIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGG 315 (382)
Q Consensus 264 ~--------~~~~~~~--~------------------~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~ 315 (382)
. +...++. . ....+.|.|+|++|||++|+.+.... ...+++...+++||.+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~tagglvf~g 492 (689)
T 1yiq_A 414 YEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLSTAGNLVFEG 492 (689)
T ss_dssp EECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEE
T ss_pred eeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceECCCEEEEE
Confidence 0 0000000 0 01148899999999999999987653 3456777889999999
Q ss_pred eecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCcee--EeecC------CccCCCCCeEEEEEC
Q 040693 316 STYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKV--TVGFG------NKNFTSGTSLYAFCV 382 (382)
Q Consensus 316 ~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~--~~~~~------~~~~~~g~~l~~~~~ 382 (382)
+. ++.|+++|++|||++|+++++.++.++|+. .+|++||+...|. ...+. .....+|..|++|.|
T Consensus 493 t~--dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f~l 567 (689)
T 1yiq_A 493 SA--DGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTYKL 567 (689)
T ss_dssp CT--TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEEEE
T ss_pred CC--CCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEecCCccccccccccccccccCCCceEEEeec
Confidence 84 999999999999999999999999988886 7999999866542 11110 134568999999975
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=277.95 Aligned_cols=337 Identities=27% Similarity=0.408 Sum_probs=242.2
Q ss_pred CCcCCCCceeeeeecC-cC-ccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCC
Q 040693 1 AVKRSNGKLVWKTKLD-DH-ARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNF 78 (382)
Q Consensus 1 ald~~tGk~~W~~~~~-~~-~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~ 78 (382)
|||++|||++|++++. +. ....+.++|++.+++||++....+++. ++.|+|||++||+++|+++..+...
T Consensus 142 alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~--------~g~v~a~D~~tG~~~W~~~~~~~~~ 213 (677)
T 1kb0_A 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGV--------RGYITAYDAETGERKWRWFSVPGDP 213 (677)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCC--------BCEEEEEETTTCCEEEEEESSCCCT
T ss_pred EEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCC--------CCEEEEEECCCCcEEEEeccCCCCc
Confidence 6899999999999975 31 224577899999999999886544332 7899999999999999998854431
Q ss_pred CCCC----------------C----CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCC
Q 040693 79 GKLN----------------E----YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEP 138 (382)
Q Consensus 79 ~~~~----------------~----~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (382)
..+. . ..|+..|. .++++++.++||+++++...+... .++ |. ..+
T Consensus 214 ~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~-~~~~d~~~~~vy~~~~~~~~w~~~--------~~~-~~-----~gd 278 (677)
T 1kb0_A 214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWD-SMTFDAELNTMYVGTGNGSPWSHK--------VRS-PK-----GGD 278 (677)
T ss_dssp TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCS-CEEEETTTTEEEEECCCEESSCHH--------HHS-TT-----CCC
T ss_pred cccccccccccccccccccCceeEeCCCccccc-ceeEcCCCCEEEEECCCCccccCC--------CCC-cc-----CCC
Confidence 1000 0 03555664 688999999999998873211111 011 11 123
Q ss_pred CCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEE
Q 040693 139 ENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAW 218 (382)
Q Consensus 139 ~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ 218 (382)
+-+.+.|+|||++||+++|+++....+.| +++..++|++.+...+|.....|++++.+|.++
T Consensus 279 ~~~~~sv~AlD~~TG~~~W~~~~~~~d~w------------------d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~ 340 (677)
T 1kb0_A 279 NLYLASIVALDPDTGKYKWHYQETPGDNW------------------DYTSTQPMILADIKIAGKPRKVILHAPKNGFFF 340 (677)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCS------------------CCCCCSCCEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred CeeeEEEEEEECCCCCEEEEEecCCCccc------------------ccccCCCcEEEecccCCcEeeEEEEECCCCEEE
Confidence 44457899999999999999999877777 445668999998777776668899999999999
Q ss_pred EEeCCCCCeeeeeccCCC-----------------------------CCCCCcccceee---eCCeEEEEecCcccc---
Q 040693 219 ALDRDSGSLIWSMEAGPG-----------------------------GLGGGAMWGAAT---DERRIYTNIANSQHK--- 263 (382)
Q Consensus 219 ald~~tG~~~W~~~~~~~-----------------------------~~~g~~~~~~~~---~~~~v~~~~~~~~~~--- 263 (382)
+||++||+++|.++..+. ...|...|+++. +.+++|+...+....
T Consensus 341 ~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (677)
T 1kb0_A 341 VLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMD 420 (677)
T ss_dssp EEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEE
T ss_pred EEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeec
Confidence 999999999999875431 123344555433 468899875531100
Q ss_pred -------------------c-----cccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecC
Q 040693 264 -------------------N-----FNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYR 319 (382)
Q Consensus 264 -------------------~-----~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 319 (382)
. +.+.+.. ....+.|.|+|++|||++|+++... ....+++..++++||+++ .
T Consensus 421 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~g~~~~~g~~v~~g~--~ 496 (677)
T 1kb0_A 421 DKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPK-SKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGT--A 496 (677)
T ss_dssp CTTCCTTCCCTTSTTGGGTCCCCEEECSSCCC-SCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEEC--T
T ss_pred ccccccccccccccccccccccccccccccCC-CCCccEEEEEeCCCCcEEeecCCCC-CCcCcceEeCCCEEEEEC--C
Confidence 0 0111111 1234889999999999999998765 345677778899999987 4
Q ss_pred CCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEe--ec--CCccCCCCCeEEEEEC
Q 040693 320 QGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTV--GF--GNKNFTSGTSLYAFCV 382 (382)
Q Consensus 320 ~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~--~~--~~~~~~~g~~l~~~~~ 382 (382)
+|.|++||++||+++|+++++.+..++|+. .+|++|+....|... ++ -......|..|+.|.|
T Consensus 497 dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l 565 (677)
T 1kb0_A 497 DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVV 565 (677)
T ss_dssp TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEE
T ss_pred CCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEec
Confidence 999999999999999999999989999988 799999987554211 00 0123445788888864
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-31 Score=253.21 Aligned_cols=267 Identities=19% Similarity=0.309 Sum_probs=208.7
Q ss_pred CCcCCCCceeeeeecCcCc------cceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeecc
Q 040693 1 AVKRSNGKLVWKTKLDDHA------RSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFML 74 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~------~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~ 74 (382)
|||++||+++|+++++... ...+.++|++.+++||+++. ++.|+|||++||+++|++++.
T Consensus 67 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------------~g~l~a~d~~tG~~~W~~~~~ 132 (376)
T 3q7m_A 67 ALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE--------------KAQVYALNTSDGTVAWQTKVA 132 (376)
T ss_dssp EEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET--------------TSEEEEEETTTCCEEEEEECS
T ss_pred EEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC--------------CCEEEEEECCCCCEEEEEeCC
Confidence 6899999999999985321 23466789999999999985 789999999999999999874
Q ss_pred CCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCc
Q 040693 75 PDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGK 154 (382)
Q Consensus 75 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~ 154 (382)
.... ++|.+. ++.||+++.+ +.|++||++||+
T Consensus 133 ~~~~-------------~~p~~~--~~~v~v~~~~---------------------------------g~l~~~d~~tG~ 164 (376)
T 3q7m_A 133 GEAL-------------SRPVVS--DGLVLIHTSN---------------------------------GQLQALNEADGA 164 (376)
T ss_dssp SCCC-------------SCCEEE--TTEEEEECTT---------------------------------SEEEEEETTTCC
T ss_pred CceE-------------cCCEEE--CCEEEEEcCC---------------------------------CeEEEEECCCCc
Confidence 3221 246665 4689987754 899999999999
Q ss_pred EEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccC
Q 040693 155 IVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAG 234 (382)
Q Consensus 155 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~ 234 (382)
++|+++....... ....++|++. ++.|++++.++.++++|++||+.+|+++..
T Consensus 165 ~~W~~~~~~~~~~-------------------~~~~~~~~~~--------~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~ 217 (376)
T 3q7m_A 165 VKWTVNLDMPSLS-------------------LRGESAPTTA--------FGAAVVGGDNGRVSAVLMEQGQMIWQQRIS 217 (376)
T ss_dssp EEEEEECCC------------------------CCCCCCEEE--------TTEEEECCTTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEEeCCCCcee-------------------ecCCCCcEEE--------CCEEEEEcCCCEEEEEECCCCcEEEEEecc
Confidence 9999987643110 0112567665 678999999999999999999999999865
Q ss_pred CCCCC------CCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe
Q 040693 235 PGGLG------GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA 308 (382)
Q Consensus 235 ~~~~~------g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~ 308 (382)
.+... ......+...++.+|+. ...+.++++|+++|+++|+.+... ...+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~p~~~~~~v~~~-----------------~~~g~l~~~d~~tG~~~w~~~~~~----~~~~~~~ 276 (376)
T 3q7m_A 218 QATGSTEIDRLSDVDTTPVVVNGVVFAL-----------------AYNGNLTALDLRSGQIMWKRELGS----VNDFIVD 276 (376)
T ss_dssp C-----------CCCCCCEEETTEEEEE-----------------CTTSCEEEEETTTCCEEEEECCCC----EEEEEEE
T ss_pred cCCCCcccccccccCCCcEEECCEEEEE-----------------ecCcEEEEEECCCCcEEeeccCCC----CCCceEE
Confidence 32100 01224456678999997 345789999999999999998643 2345678
Q ss_pred CCEEEEeeecCCCcEEEEeCCCCcEeEEEe-cCCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 309 NGVLFGGSTYRQGPIYAMDVKTGKILWSYD-TGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 309 ~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~-~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
++.+|+++. ++.|+++|+++|+++|+.+ ......++|++.+++||+++.+|. ++++|..+|+.+|.+.+
T Consensus 277 ~~~l~~~~~--~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~~~~g~---l~~~d~~tG~~~~~~~~ 346 (376)
T 3q7m_A 277 GNRIYLVDQ--NDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGY---LHWINVEDGRFVAQQKV 346 (376)
T ss_dssp TTEEEEEET--TCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEECTTSE---EEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcC--CCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEEeCCCe---EEEEECCCCcEEEEEec
Confidence 899999984 8999999999999999998 445677889999999999998875 68899999999999864
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-30 Score=269.07 Aligned_cols=338 Identities=22% Similarity=0.402 Sum_probs=236.3
Q ss_pred CCcCCCCceeeeeecCcC-ccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDH-ARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~-~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
|||++|||++|+++..+. ....+.++|++.+++||++....+.+. +|.|+|||++||+++|+++..+....
T Consensus 131 alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~--------~g~v~a~D~~tG~~~W~~~~~~~~p~ 202 (668)
T 1kv9_A 131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGV--------RGFVSAYDADTGKLAWRFYTVPGDPA 202 (668)
T ss_dssp EEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCC--------BCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred EEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCC--------CCEEEEEECCCCcEEEEecccCCCCC
Confidence 689999999999997532 234567899999999999876544332 78999999999999999987432111
Q ss_pred CC----------CCC---------cCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCC
Q 040693 80 KL----------NEY---------AGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPEN 140 (382)
Q Consensus 80 ~~----------~~~---------~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (382)
.. ..+ .|+..|. +++++++.++||+++++...+.... + +| ...++-
T Consensus 203 ~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~-~~a~d~~~~~vy~~~~~g~~w~~~~--------~-~~-----~~gd~l 267 (668)
T 1kv9_A 203 LPYEHPELREAAKTWQGDQYWKLGGGGTVWD-SMAYDPELDLLYVGTGNGSPWNREV--------R-SP-----GGGDNL 267 (668)
T ss_dssp SCCSSHHHHHHHTTCCSSCHHHHCEECCCCS-CEEEETTTTEEEEECCCEESSCHHH--------H-ST-----TCCCCT
T ss_pred ccccccccccccccCCccceeeeCCCCcccc-ceEEcCCCCEEEEeCCCCCccccCC--------C-CC-----CCCCce
Confidence 00 000 3456675 6899998899999998742211111 1 11 123344
Q ss_pred CcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEE
Q 040693 141 HSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 141 ~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
+.+.|+|||++||+++|+++..+.+.|. ++..+.|++.++..+|.....|++++.+|.+++|
T Consensus 268 ~~~~v~AlD~~tG~~~W~~~~~~~~~wd------------------~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l 329 (668)
T 1kv9_A 268 YLSSILAIRPDTGKLAWHYQVTPGDSWD------------------FTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (668)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSC------------------CCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred eeeeEEEEcCCCCceeeEeecCCCcccc------------------ccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence 5578999999999999999998777663 3344667777777777666789999999999999
Q ss_pred eCCCCCeeeeeccCCC------------------------------CCCCCcccceee---eCCeEEEEecCccc-----
Q 040693 221 DRDSGSLIWSMEAGPG------------------------------GLGGGAMWGAAT---DERRIYTNIANSQH----- 262 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~------------------------------~~~g~~~~~~~~---~~~~v~~~~~~~~~----- 262 (382)
|++||+++|..+..+. ...|...|++.. +.+++|+...+...
T Consensus 330 D~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~ 409 (668)
T 1kv9_A 330 DRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNE 409 (668)
T ss_dssp ETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCC
T ss_pred ECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeee
Confidence 9999999966543320 112333444333 45788886543210
Q ss_pred -ccc------ccC------CCC-CCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeC
Q 040693 263 -KNF------NLK------PSK-NSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDV 328 (382)
Q Consensus 263 -~~~------~~~------~~~-~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~ 328 (382)
..+ ... ... .....+.|+|+|++|||++|+.+.... ...+++...+++||+++. ++.|+++|.
T Consensus 410 ~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~~~~~t~gg~vf~g~~--dg~l~a~d~ 486 (668)
T 1kv9_A 410 GKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-WNGGTLSTAGNLVFQGTA--AGQMHAYSA 486 (668)
T ss_dssp GGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEETTTEEEEECT--TSEEEEEET
T ss_pred ccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-CcCceeEeCCCEEEEECC--cccchhhhh
Confidence 000 000 000 112348899999999999999987653 456777788999999984 999999999
Q ss_pred CCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeec----C----CccCCCCCeEEEEEC
Q 040693 329 KTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGF----G----NKNFTSGTSLYAFCV 382 (382)
Q Consensus 329 ~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~----~----~~~~~~g~~l~~~~~ 382 (382)
++|+++|+++++.++.++|+. .+|++||+...|.-..+ - .+...+|..|+.|.+
T Consensus 487 ~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l 550 (668)
T 1kv9_A 487 DKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFAL 550 (668)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEE
T ss_pred hcChhheEecCCCCcccCceEEEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEc
Confidence 999999999999888888886 79999998766531110 0 022346888888864
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=242.15 Aligned_cols=269 Identities=18% Similarity=0.319 Sum_probs=202.5
Q ss_pred CCCceeeeeecCcCcc-ceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCC
Q 040693 5 SNGKLVWKTKLDDHAR-SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNE 83 (382)
Q Consensus 5 ~tGk~~W~~~~~~~~~-~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~ 83 (382)
.+++++|++++++... ....++|++.+++||+++. ++.|+|||++||+++|++++.......
T Consensus 26 ~~~~~~W~~~~~~~~~~~~~~~~p~v~~~~v~~~~~--------------~g~v~a~d~~tG~~~W~~~~~~~~~~~--- 88 (376)
T 3q7m_A 26 FTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADR--------------AGLVKALNADDGKEIWSVSLAEKDGWF--- 88 (376)
T ss_dssp SCCEEEEEECCTTTTTTSCCCCCCEEETTEEEEECT--------------TSEEEEEETTTCCEEEEEECCC---CC---
T ss_pred CcceEEeEEecCCCccccceeeccEEECCEEEEEcC--------------CCeEEEEEccCCceeeeecCccccccc---
Confidence 4689999999865321 2345699999999999985 789999999999999999874321100
Q ss_pred CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCC
Q 040693 84 YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGG 163 (382)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~ 163 (382)
........+.+.++ ++.||+++.+ +.|+|||++||+++|+++...
T Consensus 89 ~~~~~~~~~~~~~~--~~~v~v~~~~---------------------------------g~l~a~d~~tG~~~W~~~~~~ 133 (376)
T 3q7m_A 89 SKEPALLSGGVTVS--GGHVYIGSEK---------------------------------AQVYALNTSDGTVAWQTKVAG 133 (376)
T ss_dssp SCCCCCEEEEEEEE--TTEEEEEETT---------------------------------SEEEEEETTTCCEEEEEECSS
T ss_pred cccCcccccCceEe--CCEEEEEcCC---------------------------------CEEEEEECCCCCEEEEEeCCC
Confidence 00000111234454 4689998764 899999999999999998764
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcc
Q 040693 164 YDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAM 243 (382)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~ 243 (382)
. +.++|++. ++.|++++.++.|+++|++||+++|+++...+.......
T Consensus 134 ~------------------------~~~~p~~~--------~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~ 181 (376)
T 3q7m_A 134 E------------------------ALSRPVVS--------DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGE 181 (376)
T ss_dssp C------------------------CCSCCEEE--------TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCC
T ss_pred c------------------------eEcCCEEE--------CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCC
Confidence 3 23567665 678999999999999999999999999875432211122
Q ss_pred cceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC---------CCcceEEeCCEEEE
Q 040693 244 WGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT---------APGPVTVANGVLFG 314 (382)
Q Consensus 244 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~---------~~~~~~~~~~~v~~ 314 (382)
..+.+.++.||+. ...+.|+++|+++|+++|+........ ....+.+.++.+|+
T Consensus 182 ~~~~~~~~~v~~g-----------------~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~ 244 (376)
T 3q7m_A 182 SAPTTAFGAAVVG-----------------GDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFA 244 (376)
T ss_dssp CCCEEETTEEEEC-----------------CTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEE
T ss_pred CCcEEECCEEEEE-----------------cCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEE
Confidence 4566678899987 345889999999999999998654210 22344577899999
Q ss_pred eeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 315 GSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 315 ~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
++. ++.|+++|+++|+++|+.+.+. ..+|++.+++||+++.+|. ++++|..+|+.+|.+.
T Consensus 245 ~~~--~g~l~~~d~~tG~~~w~~~~~~--~~~~~~~~~~l~~~~~~g~---l~~~d~~tG~~~w~~~ 304 (376)
T 3q7m_A 245 LAY--NGNLTALDLRSGQIMWKRELGS--VNDFIVDGNRIYLVDQNDR---VMALTIDGGVTLWTQS 304 (376)
T ss_dssp ECT--TSCEEEEETTTCCEEEEECCCC--EEEEEEETTEEEEEETTCC---EEEEETTTCCEEEEEC
T ss_pred Eec--CcEEEEEECCCCcEEeeccCCC--CCCceEECCEEEEEcCCCe---EEEEECCCCcEEEeec
Confidence 884 8999999999999999998654 4578889999999998866 6889999999999874
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-27 Score=243.48 Aligned_cols=219 Identities=25% Similarity=0.358 Sum_probs=144.9
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
.|.++++++|+++++......+.++|++.+++||+++. .+.|+|||++||+++|++++.......+
T Consensus 39 ~n~~~~~~~W~~~~~~~~~~g~~~~P~v~~g~vyv~~~--------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~ 104 (582)
T 1flg_A 39 DNVFKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTAS--------------YSRLFALDAKTGKRLWTYNHRLPDDIRP 104 (582)
T ss_dssp TTGGGCEEEEEEECCTTCCSCCCCCCEEETTEEEEEET--------------TTEEEEEESSSCCEEEEEECCCCTTCCC
T ss_pred cccCCCcEEEEEECCCccCCcceeccEEECCEEEEEcC--------------CCCEEEEECCCCcEEEEEcCCCCccccc
Confidence 46678999999998753323356899999999999885 3559999999999999998753321100
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
..+ .....+++. ++.||+++.+ +.|+|||++||+++|+++.
T Consensus 105 --~~~--~~~~g~a~~--~~~v~~~t~d---------------------------------g~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 105 --CCD--VVNRGAAIY--GDKVFFGTLD---------------------------------ASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp --SSC--SCCCCCEEE--TTEEEEEETT---------------------------------TEEEEEESSSCCEEEEEEC
T ss_pred --ccc--cCCCccEEE--CCEEEEEeCC---------------------------------CEEEEEECCCCCEEeeecC
Confidence 000 001234454 4689998754 8999999999999999987
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc------CcEEEEEeCCCCCeeeeeccCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK------SGFAWALDRDSGSLIWSMEAGP 235 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~------~g~l~ald~~tG~~~W~~~~~~ 235 (382)
..... .+.+.++|++..-..+| ...|+++.. ++.|+|||++||+++|+.+...
T Consensus 146 ~~~~~-------------------~~~~~~sP~v~~~~~~G--~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~ 204 (582)
T 1flg_A 146 ADHGA-------------------GYTMTGAPTIVKDGKTG--KVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVE 204 (582)
T ss_dssp SCGGG-------------------TCBCCSCCEEEECTTTC--CEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESST
T ss_pred CCCCc-------------------CcccccCCEEeCCCcCC--cEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCc
Confidence 64310 12355789887311111 117777653 7899999999999999986531
Q ss_pred CC-----------------------------------CCCCccccee-e--eCCeEEEEecCcccccccc--C--CCC--
Q 040693 236 GG-----------------------------------LGGGAMWGAA-T--DERRIYTNIANSQHKNFNL--K--PSK-- 271 (382)
Q Consensus 236 ~~-----------------------------------~~g~~~~~~~-~--~~~~v~~~~~~~~~~~~~~--~--~~~-- 271 (382)
.. ..+...|... + +.++||+...+... +.. + ++.
T Consensus 205 ~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~--~~~~~r~~~gg~~ 282 (582)
T 1flg_A 205 GHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGP--WNTWARTAKGGNP 282 (582)
T ss_dssp TCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSS--SCGGGGSCTTSCS
T ss_pred cccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCc--ccCcccccCCCcc
Confidence 00 0122334432 2 46899998765321 111 1 110
Q ss_pred ---CCCCCceEEEEECCCCcEEeeecCC
Q 040693 272 ---NSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 272 ---~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
.....+.|+|+|++||+++|++...
T Consensus 283 ~~~d~~~~~~v~AlD~~TG~~~W~~q~~ 310 (582)
T 1flg_A 283 HDYDSLYTSGQVGVDPSSGEVKWFYQHT 310 (582)
T ss_dssp TTCCCTTCSEEEEECTTTCCEEEEEESS
T ss_pred cccCCcccceEEEEeCCCCCEEEEEeCC
Confidence 1223478999999999999998753
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-27 Score=237.90 Aligned_cols=300 Identities=20% Similarity=0.285 Sum_probs=194.9
Q ss_pred CCcC-CCCceeeeeecCcCccc-------eeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeee
Q 040693 1 AVKR-SNGKLVWKTKLDDHARS-------FITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTF 72 (382)
Q Consensus 1 ald~-~tGk~~W~~~~~~~~~~-------~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~ 72 (382)
|||+ +|||++|++++...... ....+|++.+++||+++. ++.|+|||++||+++|+++
T Consensus 77 AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------------dg~l~alD~~tG~~~W~~~ 142 (571)
T 2ad6_A 77 ALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA--------------NGHLLALDAKTGKINWEVE 142 (571)
T ss_dssp EEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--------------TSEEEEEETTTCCEEEEEE
T ss_pred EEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC--------------CCEEEEEECCCCCEEEEec
Confidence 6899 99999999987642110 234578999999999985 8899999999999999998
Q ss_pred ccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCC
Q 040693 73 MLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDT 152 (382)
Q Consensus 73 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~t 152 (382)
+..... + ....++|++. ++.||++.... ....++.|+|||++|
T Consensus 143 ~~~~~~-------~-~~~~~~P~v~--~g~v~vg~~~~---------------------------~~~~~g~v~a~D~~t 185 (571)
T 2ad6_A 143 VCDPKV-------G-STLTQAPFVA--KDTVLMGCSGA---------------------------ELGVRGAVNAFDLKT 185 (571)
T ss_dssp CCCGGG-------T-CBCCSCCEEE--TTEEEEECBCG---------------------------GGTCCCEEEEEETTT
T ss_pred CCCCCc-------c-ceeccCCEEE--CCEEEEEecCC---------------------------ccCCCCEEEEEECCC
Confidence 742110 0 0112357665 46899876520 001248999999999
Q ss_pred CcEEEEEecCCCcccccccccCCCCC----------------CCCCCC---CCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 153 GKIVWYKQLGGYDVWFGACNWYLNPN----------------CPPGPS---PDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 153 G~~~W~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~---~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
|+++|+++......-. ...|. .++... ........+.+. ...+.||+++.
T Consensus 186 G~~~W~~~~~~~~~~~-----~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d------~~~g~vy~~~g 254 (571)
T 2ad6_A 186 GELKWRAFATGSDDSV-----RLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYD------PKLNLFYYGSG 254 (571)
T ss_dssp CCEEEEEESSSCHHHH-----TBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEE------TTTTEEEEECC
T ss_pred CcEEEEEccCCCcccc-----ccCcccccccccccccccccccCcccceecCCCCeeeeEEEc------CCCCeEEEECC
Confidence 9999999876432000 00000 000000 000000122221 12467777764
Q ss_pred C----------------cEEEEEeCCCCCeeeeeccCCCCC-CCCcccceee-e---CC----eEEEEecCccccccccC
Q 040693 214 S----------------GFAWALDRDSGSLIWSMEAGPGGL-GGGAMWGAAT-D---ER----RIYTNIANSQHKNFNLK 268 (382)
Q Consensus 214 ~----------------g~l~ald~~tG~~~W~~~~~~~~~-~g~~~~~~~~-~---~~----~v~~~~~~~~~~~~~~~ 268 (382)
+ +.|+|||++||+++|+++..+... .......++. + ++ .+++.
T Consensus 255 ~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~------------ 322 (571)
T 2ad6_A 255 NPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHI------------ 322 (571)
T ss_dssp CCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEE------------
T ss_pred CCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEe------------
Confidence 2 369999999999999998753210 0001112222 2 33 24444
Q ss_pred CCCCCCCCceEEEEECCCCcEEeeecCCCCCC--------C-----------------------------CcceEEe--C
Q 040693 269 PSKNSTIAGGWVAMDASNGNVLWSTADPSNGT--------A-----------------------------PGPVTVA--N 309 (382)
Q Consensus 269 ~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~--------~-----------------------------~~~~~~~--~ 309 (382)
...|.+++||++||+++|+.+...... . -.++.++ .
T Consensus 323 -----~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~ 397 (571)
T 2ad6_A 323 -----DRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES 397 (571)
T ss_dssp -----CTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred -----CCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence 456899999999999999987543100 0 0123343 4
Q ss_pred CEEEEeeec-----------------------------------CCCcEEEEeCCCCcEeEEEecCCceecceE-EeCCE
Q 040693 310 GVLFGGSTY-----------------------------------RQGPIYAMDVKTGKILWSYDTGATIYGGAS-VSNGC 353 (382)
Q Consensus 310 ~~v~~~~~~-----------------------------------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~-~~~g~ 353 (382)
+++|+.+.. ..|.|+|+|++||+++|+++.+....++++ ..++.
T Consensus 398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~ 477 (571)
T 2ad6_A 398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGL 477 (571)
T ss_dssp TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTE
T ss_pred CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCE
Confidence 788887530 247899999999999999998876666664 46899
Q ss_pred EEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 354 IYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 354 lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
||+++.+|. ++++|.++|++||.|.+
T Consensus 478 v~~g~~dg~---l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 478 VWYATLDGY---LKALDNKDGKELWNFKM 503 (571)
T ss_dssp EEEECTTSE---EEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCe---EEEEECCCCCEEEEEeC
Confidence 999988876 68899999999999974
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=241.36 Aligned_cols=305 Identities=17% Similarity=0.226 Sum_probs=193.2
Q ss_pred CCcC-CCCceeeeeecCcCccc-------eeeeceEE--EcCE----EEEeccCccccccccccccccceEEEEeCccCc
Q 040693 1 AVKR-SNGKLVWKTKLDDHARS-------FITMSGTY--YKGA----YYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGR 66 (382)
Q Consensus 1 ald~-~tGk~~W~~~~~~~~~~-------~~~~~p~v--~~~~----v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~ 66 (382)
|||+ +|||++|+++....... .....|++ .+++ ||+++. ++.|+|||++||+
T Consensus 77 AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~--------------dg~l~AlDa~TG~ 142 (599)
T 1w6s_A 77 ALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL--------------DGNVAALNAETGE 142 (599)
T ss_dssp EEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT--------------TSEEEEEETTTCC
T ss_pred EEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC--------------CCEEEEEECCCCC
Confidence 6899 99999999987543110 12346788 7888 999885 8899999999999
Q ss_pred eeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEE
Q 040693 67 ILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLL 146 (382)
Q Consensus 67 ~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ 146 (382)
++|++++..... + ....++|++. ++.||++.... ....++.|+
T Consensus 143 ~~W~~~~~~~~~-------~-~~~~ssP~v~--~g~V~vg~~g~---------------------------e~g~~g~v~ 185 (599)
T 1w6s_A 143 TVWKVENSDIKV-------G-STLTIAPYVV--KDKVIIGSSGA---------------------------ELGVRGYLT 185 (599)
T ss_dssp EEEEEECCCGGG-------T-CBCCSCCEEE--TTEEEECCBCG---------------------------GGTCCCEEE
T ss_pred EEEeecCCCCCc-------c-ceeecCCEEE--CCEEEEEeccc---------------------------ccCCCCeEE
Confidence 999998742110 1 1112457775 36888876420 001248999
Q ss_pred EEECCCCcEEEEEecCCCcccc-ccc-ccCCCCC---------CCCCCC---CCCCCCCCceEEEeeeCceeecEEEEEc
Q 040693 147 ALDLDTGKIVWYKQLGGYDVWF-GAC-NWYLNPN---------CPPGPS---PDADFGEAPMMLSMYRNKVKHDIVVAVQ 212 (382)
Q Consensus 147 ald~~tG~~~W~~~~~~~~~~~-~~~-~~~~~~~---------~~~~~~---~~~~~~~~p~~~~~~~~g~~~~~v~~~~ 212 (382)
|||++||+++|++.......-. ... .....|. .+++.. ......+.+.+. ...++||+++
T Consensus 186 A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d------~~~g~vy~g~ 259 (599)
T 1w6s_A 186 AYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYD------PGTNLIYFGT 259 (599)
T ss_dssp EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEE------TTTTEEEEEC
T ss_pred EEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEe------CCCCEEEEeC
Confidence 9999999999999876542100 000 0000000 000000 000011233332 2257888887
Q ss_pred cC----------------cEEEEEeCCCCCeeeeeccCCCCC-CCCccccee-ee----CC----eEEEEecCccccccc
Q 040693 213 KS----------------GFAWALDRDSGSLIWSMEAGPGGL-GGGAMWGAA-TD----ER----RIYTNIANSQHKNFN 266 (382)
Q Consensus 213 ~~----------------g~l~ald~~tG~~~W~~~~~~~~~-~g~~~~~~~-~~----~~----~v~~~~~~~~~~~~~ 266 (382)
.+ +.|+|||++||+++|+++..+... .-.....+. .+ ++ .++..
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~---------- 329 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHP---------- 329 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEE----------
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEE----------
Confidence 65 379999999999999999754210 000111121 12 23 23333
Q ss_pred cCCCCCCCCCceEEEEECCCCcEEeeecCCCCC-------------------------------------CCCcceEEe-
Q 040693 267 LKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG-------------------------------------TAPGPVTVA- 308 (382)
Q Consensus 267 ~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~-------------------------------------~~~~~~~~~- 308 (382)
...|.+++||++||+++|+.+..... ..-.++.++
T Consensus 330 -------~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 330 -------DRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp -------CTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred -------CCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 45689999999999999998753200 000122232
Q ss_pred -CCEEEEeee-------------------------------c------CCCcEEEEeCCCCcEeEEEecCCceecceE-E
Q 040693 309 -NGVLFGGST-------------------------------Y------RQGPIYAMDVKTGKILWSYDTGATIYGGAS-V 349 (382)
Q Consensus 309 -~~~v~~~~~-------------------------------~------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~-~ 349 (382)
.+++|+... . ..|.|+|+|++|||++|+.+.+....++++ .
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t 482 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT 482 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe
Confidence 345555421 0 247899999999999999988766666654 5
Q ss_pred eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 350 SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 350 ~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.++.||+++.+|. ++++|.+||++||.|++
T Consensus 483 agg~vf~gt~dg~---l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 483 AGDLVFYGTLDGY---LKARDSDTGDLLWKFKI 512 (599)
T ss_dssp TTTEEEEECTTSE---EEEEETTTCCEEEEEEC
T ss_pred cCCEEEEECCCCe---EEEEECCCCCEEEEeeC
Confidence 7899999988876 78999999999999975
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-27 Score=241.66 Aligned_cols=298 Identities=20% Similarity=0.338 Sum_probs=202.4
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
.|.++++++|++.++.. ..+.++|++.+++||+++. ++.|+|||++||+++|++++.......+
T Consensus 50 ~n~~~~~~~W~~~~~~~--~g~~~~P~v~~g~vyv~~~--------------~~~v~AlD~~tG~~~W~~~~~~~~~~~~ 113 (677)
T 1kb0_A 50 ANVKDLGLAWSYNLEST--RGVEATPVVVDGIMYVSAS--------------WSVVHAIDTRTGNRIWTYDPQIDRSTGF 113 (677)
T ss_dssp TTGGGEEEEEEEECCCC--SCCCCCCEEETTEEEEECG--------------GGCEEEEETTTTEEEEEECCCCCGGGGG
T ss_pred ccccCccEEEEEECCCC--CCceeCCEEECCEEEEECC--------------CCeEEEEECCCCcEEEEEcCCCCccccc
Confidence 35678999999998642 2256899999999999885 7899999999999999998743211000
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
... .. .....++++ ++.||+++.+ +.|+|||++||+++|+++.
T Consensus 114 ~~~-~~-~~~~~~a~~--~~~v~v~~~d---------------------------------g~l~alD~~tG~~~W~~~~ 156 (677)
T 1kb0_A 114 KGC-CD-VVNRGVALW--KGKVYVGAWD---------------------------------GRLIALDAATGKEVWHQNT 156 (677)
T ss_dssp GSS-SC-SCCCCCEEE--TTEEEEECTT---------------------------------SEEEEEETTTCCEEEEEET
T ss_pred ccc-cc-CCCCCceEE--CCEEEEEcCC---------------------------------CEEEEEECCCCCEEeeecC
Confidence 000 00 001235554 4689998754 8999999999999999987
Q ss_pred C-CCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc------CcEEEEEeCCCCCeeeeeccC
Q 040693 162 G-GYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK------SGFAWALDRDSGSLIWSMEAG 234 (382)
Q Consensus 162 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~------~g~l~ald~~tG~~~W~~~~~ 234 (382)
. ... ..+.+.++|++. ++.|+++.. ++.|++||++||+++|+++..
T Consensus 157 ~~~~~-------------------~~~~~~~~p~v~--------~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~ 209 (677)
T 1kb0_A 157 FEGQK-------------------GSLTITGAPRVF--------KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV 209 (677)
T ss_dssp TTTCC-------------------SSCBCCSCCEEE--------TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred CcCcC-------------------cCcccccCcEEE--------CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccC
Confidence 6 211 012355788886 678888764 689999999999999999875
Q ss_pred CCCC--------------------------CCCcccce-ee--eCCeEEEEecCcc------------------------
Q 040693 235 PGGL--------------------------GGGAMWGA-AT--DERRIYTNIANSQ------------------------ 261 (382)
Q Consensus 235 ~~~~--------------------------~g~~~~~~-~~--~~~~v~~~~~~~~------------------------ 261 (382)
.... .+...|.. .. ++++||+...+..
T Consensus 210 ~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD 289 (677)
T 1kb0_A 210 PGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALD 289 (677)
T ss_dssp CCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred CCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEE
Confidence 4321 11222322 22 4788888765421
Q ss_pred ----ccccc--cCCC------------C--------------CCCCCceEEEEECCCCcEEeeecCCCCC----------
Q 040693 262 ----HKNFN--LKPS------------K--------------NSTIAGGWVAMDASNGNVLWSTADPSNG---------- 299 (382)
Q Consensus 262 ----~~~~~--~~~~------------~--------------~~~~~g~v~a~d~~tG~~~W~~~~~~~~---------- 299 (382)
...+. ..+. . .....|.|++||.+||+++|+.+.....
T Consensus 290 ~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~ 369 (677)
T 1kb0_A 290 PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGK 369 (677)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSC
T ss_pred CCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCc
Confidence 00111 1110 0 0134567888888888888887643200
Q ss_pred -----------------------CCCcceEEe--CCEEEEeeec------------------------------------
Q 040693 300 -----------------------TAPGPVTVA--NGVLFGGSTY------------------------------------ 318 (382)
Q Consensus 300 -----------------------~~~~~~~~~--~~~v~~~~~~------------------------------------ 318 (382)
..-.++.++ .+++|+.+..
T Consensus 370 ~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~ 449 (677)
T 1kb0_A 370 PIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAE 449 (677)
T ss_dssp EEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSS
T ss_pred eeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccc
Confidence 000133444 4788887530
Q ss_pred -----CCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 319 -----RQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 319 -----~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
..|.|+++|++|||++|+++.+...++.++. .++.+|+++.+|. ++++|.+||++||.|.+
T Consensus 450 ~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~---l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 450 PPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGR---LVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE---EEEEETTTCCEEEEEEC
T ss_pred cCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEEEEECCCCc---EEEEECCCCceeeeeeC
Confidence 0177999999999999999987766666554 6789999987766 68899999999999975
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-26 Score=239.18 Aligned_cols=306 Identities=17% Similarity=0.247 Sum_probs=193.5
Q ss_pred CCcCCCCceeeeeecCcCcc-------ceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeec
Q 040693 1 AVKRSNGKLVWKTKLDDHAR-------SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFM 73 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~-------~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~ 73 (382)
|||++|||++|+++...... ..+..+|++.+++||+++. ++.|+|||++||+++|+++.
T Consensus 84 AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--------------dg~l~AlDa~TG~~~W~~~~ 149 (689)
T 1yiq_A 84 ALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--------------DGRLEAIDAKTGQRAWSVDT 149 (689)
T ss_dssp EEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT--------------TSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc--------------CCEEEEEECCCCCEeeeecC
Confidence 68999999999998653211 1234568999999999985 89999999999999999987
Q ss_pred cCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCC
Q 040693 74 LPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTG 153 (382)
Q Consensus 74 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG 153 (382)
..+.. ......++|++. ++.||++.... +...++.|+|||++||
T Consensus 150 ~~~~~-------~~~~~~~sP~v~--~g~v~vg~~~~---------------------------~~~~~g~v~a~D~~tG 193 (689)
T 1yiq_A 150 RADHK-------RSYTITGAPRVV--NGKVVIGNGGA---------------------------EFGVRGYVTAYDAETG 193 (689)
T ss_dssp CSCTT-------SCCBCCSCCEEE--TTEEEECCBCT---------------------------TTCCBCEEEEEETTTC
T ss_pred cCCCC-------CCccccCCcEEE--CCEEEEEeCCC---------------------------ccCCCCEEEEEECCCC
Confidence 41110 000112356665 46888876431 0113589999999999
Q ss_pred cEEEEEecCCCcccccccc-cC-CCCCCCCCC-----CCCCCCCCCceEEEeeeCceeecEEEEEccCcE----------
Q 040693 154 KIVWYKQLGGYDVWFGACN-WY-LNPNCPPGP-----SPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGF---------- 216 (382)
Q Consensus 154 ~~~W~~~~~~~~~~~~~~~-~~-~~~~~~~~~-----~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~---------- 216 (382)
+++|+++............ .. .....+.+. ..-......+.+. ...++||+++.++.
T Consensus 194 ~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d------~~~~~vy~~~~~g~~w~~~~~~~~ 267 (689)
T 1yiq_A 194 KEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYD------PELNLLYIGVGNGSLWDPKWRSQA 267 (689)
T ss_dssp CEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEE------TTTTEEEEECCCEESSCHHHHHTT
T ss_pred cEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEc------CCCCEEEEeCCCCCccccCCCCCC
Confidence 9999998532110000000 00 000000000 0000011122221 12578888887764
Q ss_pred ---------EEEEeCCCCCeeeeeccCCCC-CC----CCcccceeeeCC----eEEEEecCccccccccCCCCCCCCCce
Q 040693 217 ---------AWALDRDSGSLIWSMEAGPGG-LG----GGAMWGAATDER----RIYTNIANSQHKNFNLKPSKNSTIAGG 278 (382)
Q Consensus 217 ---------l~ald~~tG~~~W~~~~~~~~-~~----g~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (382)
|+|||++||+++|+++..+.. .. ..........++ .|++. +..|.
T Consensus 268 ~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~-----------------~~~G~ 330 (689)
T 1yiq_A 268 KGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQA-----------------PKNGF 330 (689)
T ss_dssp CSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC-----------------CTTSE
T ss_pred CCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEE-----------------CCCCe
Confidence 999999999999999864321 00 000111111122 34443 45699
Q ss_pred EEEEECCCCcEEeeecCCCCC-------------------------------------CCCcceEEe--CCEEEEeeec-
Q 040693 279 WVAMDASNGNVLWSTADPSNG-------------------------------------TAPGPVTVA--NGVLFGGSTY- 318 (382)
Q Consensus 279 v~a~d~~tG~~~W~~~~~~~~-------------------------------------~~~~~~~~~--~~~v~~~~~~- 318 (382)
+++||.+||+++|+.+..... ..-.++.++ .+++|+.+..
T Consensus 331 l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~ 410 (689)
T 1yiq_A 331 FYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIM 410 (689)
T ss_dssp EEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEEC
T ss_pred EEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEecccc
Confidence 999999999999876643200 001123444 4788887431
Q ss_pred --------C----------------------------------CCcEEEEeCCCCcEeEEEecCCceecceE-EeCCEEE
Q 040693 319 --------R----------------------------------QGPIYAMDVKTGKILWSYDTGATIYGGAS-VSNGCIY 355 (382)
Q Consensus 319 --------~----------------------------------~g~l~~ld~~tG~ilw~~~~~~~~~~~p~-~~~g~ly 355 (382)
. .|.|+|+|++|||++|+++.+....+.++ ..++.||
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf 490 (689)
T 1yiq_A 411 SAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAGNLVF 490 (689)
T ss_dssp CEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEE
T ss_pred ceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccceECCCEEE
Confidence 0 26799999999999999998876665444 4788999
Q ss_pred EEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 356 MGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 356 v~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
+++.+|. ++++|.+||++||.|.+
T Consensus 491 ~gt~dg~---l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 491 EGSADGR---VIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EECTTSE---EEEEETTTCCEEEEEEC
T ss_pred EECCCCc---EEEEECCCCccceeeeC
Confidence 9988876 68899999999999974
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-25 Score=231.41 Aligned_cols=304 Identities=19% Similarity=0.242 Sum_probs=193.0
Q ss_pred CCcCCCCceeeeeecCcCcc-------ceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeec
Q 040693 1 AVKRSNGKLVWKTKLDDHAR-------SFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFM 73 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~-------~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~ 73 (382)
|||++|||++|+++...... ..+...|++.+++||+++. ++.|+|||++||+++|++++
T Consensus 80 AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--------------dg~l~alD~~tG~~~W~~~~ 145 (668)
T 1kv9_A 80 AVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--------------DGRLIALDAKTGKAIWSQQT 145 (668)
T ss_dssp EEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT--------------TSEEEEEETTTCCEEEEEEC
T ss_pred EEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC--------------CCEEEEEECCCCCEeeeecc
Confidence 68999999999998753211 1124568999999999985 88999999999999999987
Q ss_pred cCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCC
Q 040693 74 LPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTG 153 (382)
Q Consensus 74 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG 153 (382)
...... + ...++|++. ++.||++.... ....++.|+|||++||
T Consensus 146 ~~~~~~----~----~~~~~P~v~--~~~v~vg~~~~---------------------------~~~~~g~v~a~D~~tG 188 (668)
T 1kv9_A 146 TDPAKP----Y----SITGAPRVV--KGKVIIGNGGA---------------------------EYGVRGFVSAYDADTG 188 (668)
T ss_dssp SCTTSS----C----BCCSCCEEE--TTEEEECCBCT---------------------------TTCCBCEEEEEETTTC
T ss_pred CCCCCc----c----eecCCCEEE--CCEEEEeCCCC---------------------------CcCCCCEEEEEECCCC
Confidence 422110 0 112356665 46888876431 0113589999999999
Q ss_pred cEEEEEecCCCccccccccc---CCCCCCCCCCC-----CCCCCCCCceEEEeeeCceeecEEEEEccCcE---------
Q 040693 154 KIVWYKQLGGYDVWFGACNW---YLNPNCPPGPS-----PDADFGEAPMMLSMYRNKVKHDIVVAVQKSGF--------- 216 (382)
Q Consensus 154 ~~~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~-----~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~--------- 216 (382)
+++|+++............. ...+ .+.+.. ......+.+.+. ...++||++..++.
T Consensus 189 ~~~W~~~~~~~~p~~~~~~~~~~~~~~-~~~g~~~w~~~~gg~~w~~~a~d------~~~~~vy~~~~~g~~w~~~~~~~ 261 (668)
T 1kv9_A 189 KLAWRFYTVPGDPALPYEHPELREAAK-TWQGDQYWKLGGGGTVWDSMAYD------PELDLLYVGTGNGSPWNREVRSP 261 (668)
T ss_dssp CEEEEEESSCCCTTSCCSSHHHHHHHT-TCCSSCHHHHCEECCCCSCEEEE------TTTTEEEEECCCEESSCHHHHST
T ss_pred cEEEEecccCCCCCccccccccccccc-cCCccceeeeCCCCccccceEEc------CCCCEEEEeCCCCCccccCCCCC
Confidence 99999986422100000000 0000 000000 000011223222 12578888887663
Q ss_pred ----------EEEEeCCCCCeeeeeccCCCCC-C----CCcccceeeeCC----eEEEEecCccccccccCCCCCCCCCc
Q 040693 217 ----------AWALDRDSGSLIWSMEAGPGGL-G----GGAMWGAATDER----RIYTNIANSQHKNFNLKPSKNSTIAG 277 (382)
Q Consensus 217 ----------l~ald~~tG~~~W~~~~~~~~~-~----g~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~g 277 (382)
|+|||++||+++|+++..+... . ..........++ .|++. +..|
T Consensus 262 ~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~-----------------~~~G 324 (668)
T 1kv9_A 262 GGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQA-----------------PKNG 324 (668)
T ss_dssp TCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEEC-----------------CTTS
T ss_pred CCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEE-----------------CCCC
Confidence 9999999999999998753210 0 001111111133 25554 4569
Q ss_pred eEEEEECCCCcEEeeecCCCCC-------C---------------------------CCcceEEe--CCEEEEeeec---
Q 040693 278 GWVAMDASNGNVLWSTADPSNG-------T---------------------------APGPVTVA--NGVLFGGSTY--- 318 (382)
Q Consensus 278 ~v~a~d~~tG~~~W~~~~~~~~-------~---------------------------~~~~~~~~--~~~v~~~~~~--- 318 (382)
.++++|.+||+++|+.+..... . .-.++.++ .+++|+....
T Consensus 325 ~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~ 404 (668)
T 1kv9_A 325 FFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPG 404 (668)
T ss_dssp EEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCE
T ss_pred EEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccce
Confidence 9999999999999776543200 0 00123343 3678874320
Q ss_pred -------------------------------CCCcEEEEeCCCCcEeEEEecCCceec-ceEEeCCEEEEEeCceeEeec
Q 040693 319 -------------------------------RQGPIYAMDVKTGKILWSYDTGATIYG-GASVSNGCIYMGNGYKVTVGF 366 (382)
Q Consensus 319 -------------------------------~~g~l~~ld~~tG~ilw~~~~~~~~~~-~p~~~~g~lyv~~~~g~~~~~ 366 (382)
.+|.|+|+|++||+++|+.+.+....+ .++..++.||+++.+|. +
T Consensus 405 ~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf~g~~dg~---l 481 (668)
T 1kv9_A 405 VYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQ---M 481 (668)
T ss_dssp EECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE---E
T ss_pred EeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEEEECCccc---c
Confidence 127899999999999999998776654 55668899999988876 6
Q ss_pred CCccCCCCCeEEEEEC
Q 040693 367 GNKNFTSGTSLYAFCV 382 (382)
Q Consensus 367 ~~~~~~~g~~l~~~~~ 382 (382)
+++|.++|++||.|.+
T Consensus 482 ~a~d~~tG~~l~~~~~ 497 (668)
T 1kv9_A 482 HAYSADKGEALWQFEA 497 (668)
T ss_dssp EEEETTTCCEEEEEEC
T ss_pred hhhhhhcChhheEecC
Confidence 8899999999999964
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-23 Score=194.61 Aligned_cols=282 Identities=18% Similarity=0.305 Sum_probs=196.5
Q ss_pred CCcCCCCceeeeeecCcCccceeeeceEE-EcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHARSFITMSGTY-YKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
+.|.++|+++|++.++ ..+.++|++ .++.||+++. ++.|+++| .+|+++|++.+....
T Consensus 3 ~~~~~~g~~~W~~~~~----~~~~~~~~~d~~g~l~v~t~--------------~~~l~~~d-~~g~~~~~~~~~~~~-- 61 (330)
T 3hxj_A 3 RGGVNDCKIKWEFLIG----NSIDSSPILAKNGTIYLGSS--------------NKNLYAIN-TDGSVKWFFKSGEII-- 61 (330)
T ss_dssp ---------CCTTTSC----EEECCCCEECTTSCEECSST--------------TTTTEEEC-TTSCEEESSCGGGEE--
T ss_pred ccccCCceEEEEEeCC----CCcccCceEccCCeEEEEcC--------------CCEEEEEC-CCCcEEEEEecCCCc--
Confidence 4688999999999874 346678888 5899999885 77899999 899999998763111
Q ss_pred CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhccc----ccCCCCCCCCCCCCCCCCCcceEEEEECCCCcE
Q 040693 80 KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQE----ENNQTTPTSPDKCIEPENHSNSLLALDLDTGKI 155 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~ 155 (382)
..++.++. .+.+|+++.+.+.++.+....+. ....+.|.+.++.+...+.++.|+++|++ |+.
T Consensus 62 -----------~~~~~~~~-~g~l~v~t~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 62 -----------ECRPSIGK-DGTIYFGSDKVYAINPDGTEKWRFDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp -----------EECCEETT-TTEECCSSCEEEEECCCGGGGGGSCC-----CCEEEETTEEEEECTTSEEEEECTT-SCE
T ss_pred -----------ccceEEec-CCcEEEecCcEEEECCCCcEEEEEECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCE
Confidence 01345543 35677766553333333333333 22334555667778888888999999998 999
Q ss_pred EEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCC
Q 040693 156 VWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGP 235 (382)
Q Consensus 156 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~ 235 (382)
+|++..... ...+|++. .++.|++++.++.++++|.+ |+.+|++....
T Consensus 129 ~~~~~~~~~------------------------~~~~~~~~-------~~g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~ 176 (330)
T 3hxj_A 129 KWRFKTKKA------------------------IYATPIVS-------EDGTIYVGSNDNYLYAINPD-GTEKWRFKTND 176 (330)
T ss_dssp EEEEECSSC------------------------CCSCCEEC-------TTSCEEEECTTSEEEEECTT-SCEEEEEECSS
T ss_pred EEEEcCCCc------------------------eeeeeEEc-------CCCEEEEEcCCCEEEEECCC-CCEeEEEecCC
Confidence 999886533 11344332 15668888888899999999 99999998643
Q ss_pred CCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe-CCEEE
Q 040693 236 GGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-NGVLF 313 (382)
Q Consensus 236 ~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~ 313 (382)
. ....+.. .++.+|++ . +.|+++| .+|+.+|+...... . ...+..+ ++.+|
T Consensus 177 ~-----~~~~~~~d~~g~l~v~-----------------t--~~l~~~d-~~g~~~~~~~~~~~-~-~~~~~~~~~g~l~ 229 (330)
T 3hxj_A 177 A-----ITSAASIGKDGTIYFG-----------------S--DKVYAIN-PDGTEKWNFYAGYW-T-VTRPAISEDGTIY 229 (330)
T ss_dssp C-----CCSCCEECTTCCEEEE-----------------S--SSEEEEC-TTSCEEEEECCSSC-C-CSCCEECTTSCEE
T ss_pred C-----ceeeeEEcCCCEEEEE-----------------e--CEEEEEC-CCCcEEEEEccCCc-c-eeceEECCCCeEE
Confidence 2 3333444 47889987 3 6799999 89999999986542 2 3333455 56999
Q ss_pred EeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEe-CCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 314 GGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVS-NGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 314 ~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~-~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
+++. ++.|+++|. +|+.+|++.......+++++. +++||+++.+|. ++++|. +|+.+|.|.+
T Consensus 230 v~t~--~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~gg---l~~~d~-~g~~~~~~~~ 292 (330)
T 3hxj_A 230 VTSL--DGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGH---LYAINP-DGTEKWNFET 292 (330)
T ss_dssp EEET--TTEEEEECT-TSCEEEEEECSSCCCSCCEECTTSCEEEECTTCE---EEEECT-TSCEEEEEEC
T ss_pred EEcC--CCeEEEECC-CCCEeEEeeCCCCccccceEcCCCeEEEecCCCC---EEEECC-CCcEEEEEEc
Confidence 9984 799999984 799999999877777778886 899999998865 577886 8999998863
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-26 Score=222.50 Aligned_cols=245 Identities=16% Similarity=0.152 Sum_probs=145.0
Q ss_pred CCcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGK 80 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~ 80 (382)
|+|++|||++|+++. . .+.++|++.++.+|+... .++.|+|||++||+.+|+.+....
T Consensus 23 a~d~~tG~~~W~~~~-~----~~~s~p~~~~g~~~v~~s-------------~dg~l~a~d~~tG~~~w~~~~~~~---- 80 (369)
T 2hz6_A 23 AVSKRTGSIKWTLKE-D----PVLQVPTHVEEPAFLPDP-------------NDGSLYTLGSKNNEGLTKLPFTIP---- 80 (369)
T ss_dssp EEETTTCCEEEEEEC-C----CSCCCC-----CCEEECT-------------TTCCEEEC-----CCSEECSCCHH----
T ss_pred EEECCCCCEEEEecC-C----CceecceEcCCCEEEEeC-------------CCCEEEEEECCCCceeeeeeccCc----
Confidence 578889999998876 2 245678888886666532 178899999889998888654210
Q ss_pred CCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEe
Q 040693 81 LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160 (382)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~ 160 (382)
....++|.+.. ++.||+++. ++.|+|+|++||+++|++.
T Consensus 81 -------~~~~~sp~~~~-~~~v~~g~~---------------------------------dg~v~a~D~~tG~~~w~~~ 119 (369)
T 2hz6_A 81 -------ELVQASPCRSS-DGILYMGKK---------------------------------QDIWYVIDLLTGEKQQTLS 119 (369)
T ss_dssp -------HHHTTCSCC------CCCCEE---------------------------------EEEEEEECCC---------
T ss_pred -------cccccCceEec-CCEEEEEeC---------------------------------CCEEEEEECCCCcEEEEec
Confidence 00012444421 245665443 4899999999999999987
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCC
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGG 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g 240 (382)
..... ..+| . ++.|+++..++.++++|++||+++|+++...
T Consensus 120 ~~~~~------------------------~~~p--~--------~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----- 160 (369)
T 2hz6_A 120 SAFAD------------------------SLSP--S--------TSLLYLGRTEYTITMYDTKTRELRWNATYFD----- 160 (369)
T ss_dssp -----------------------------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-----
T ss_pred CCCcc------------------------cccc--c--------CCEEEEEecCCEEEEEECCCCCEEEeEeccc-----
Confidence 65321 1223 1 6788888889999999999999999987531
Q ss_pred Ccccceeee-----CCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE-eCCEEEE
Q 040693 241 GAMWGAATD-----ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFG 314 (382)
Q Consensus 241 ~~~~~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~ 314 (382)
...+++. ++.+|++ ..++.|+++|+++|+++|+.+...+. .....+ .++++|+
T Consensus 161 --~~~~~~~~~~~~~~~v~~~-----------------~~dg~v~a~d~~tG~~~W~~~~~~pv--~~~~~~~~dg~~~v 219 (369)
T 2hz6_A 161 --YAASLPEDDVDYKMSHFVS-----------------NGDGLVVTVDSESGDVLWIQNYASPV--VAFYVWQREGLRKV 219 (369)
T ss_dssp --ECCBCCCCCTTCCCCEEEE-----------------ETSCEEEEECTTTCCEEEEEECSSCE--EEEEECTTSSCEEE
T ss_pred --ccCccccCCccccceEEEE-----------------CCCCEEEEEECCCCcEEEEecCCCce--EEEEEecCCceEec
Confidence 1122222 2678876 34588999999999999999864321 111111 2455443
Q ss_pred eee-cCCCcEEEEeCCCCc----EeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCC
Q 040693 315 GST-YRQGPIYAMDVKTGK----ILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFT 372 (382)
Q Consensus 315 ~~~-~~~g~l~~ld~~tG~----ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~ 372 (382)
... ..++.+++||.++|+ ++|+++++..+. +|++.+++||+++.+|. +|+++..
T Consensus 220 ~~~~~~~~~l~~ld~~tG~~~~~~~W~~~~~~~~~-sp~~~~g~lyv~~~~G~---l~al~~~ 278 (369)
T 2hz6_A 220 MHINVAVETLRYLTFMSGEVGRITKWKYPFPKETE-AKSKLTPTLYVGKYSTS---LYASPSM 278 (369)
T ss_dssp CCEEEEHHHHHHHHHHHHHHHHHHTSCCCCCCHHH-HHHHSEEEECBEECSSC---EECCEEE
T ss_pred cceeecccceeeeehhcCCcccceeeeeccCcccc-ccccccceEEEecccCC---EEecCcc
Confidence 210 014568899999999 999999887766 89999999999999876 5677665
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-25 Score=213.90 Aligned_cols=236 Identities=14% Similarity=0.171 Sum_probs=139.4
Q ss_pred eceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEE
Q 040693 25 MSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVY 104 (382)
Q Consensus 25 ~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~ 104 (382)
++|++.+++||+++. ++.|+|||++||+++|+++. .... +.|.+.. +.+|
T Consensus 3 ssP~v~~~~v~~gs~--------------dg~v~a~d~~tG~~~W~~~~-~~~~-------------s~p~~~~--g~~~ 52 (369)
T 2hz6_A 3 STVTLPETLLFVSTL--------------DGSLHAVSKRTGSIKWTLKE-DPVL-------------QVPTHVE--EPAF 52 (369)
T ss_dssp -----CTTEEEEEET--------------TSEEEEEETTTCCEEEEEEC-CCSC-------------CCC-------CCE
T ss_pred CCCeeeCCEEEEEcC--------------CCEEEEEECCCCCEEEEecC-CCce-------------ecceEcC--CCEE
Confidence 589999999999986 89999999999999999986 2211 2455442 3445
Q ss_pred EEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCC
Q 040693 105 IATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPS 184 (382)
Q Consensus 105 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (382)
+... .++.|+|+|++||+.+|+.+......
T Consensus 53 v~~s--------------------------------~dg~l~a~d~~tG~~~w~~~~~~~~~------------------ 82 (369)
T 2hz6_A 53 LPDP--------------------------------NDGSLYTLGSKNNEGLTKLPFTIPEL------------------ 82 (369)
T ss_dssp EECT--------------------------------TTCCEEEC-----CCSEECSCCHHHH------------------
T ss_pred EEeC--------------------------------CCCEEEEEECCCCceeeeeeccCccc------------------
Confidence 4422 13899999999999999986542211
Q ss_pred CCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccc
Q 040693 185 PDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKN 264 (382)
Q Consensus 185 ~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~ 264 (382)
+.++|++.. ++.|++++.++.++++|++||+++|+++.... ....+ +++.||++.
T Consensus 83 ----~~~sp~~~~-------~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~-----~~~~p--~~~~v~~~~------- 137 (369)
T 2hz6_A 83 ----VQASPCRSS-------DGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA-----DSLSP--STSLLYLGR------- 137 (369)
T ss_dssp ----HTTCSCC------------CCCCEEEEEEEEECCC-----------------------------EEEEE-------
T ss_pred ----cccCceEec-------CCEEEEEeCCCEEEEEECCCCcEEEEecCCCc-----ccccc--cCCEEEEEe-------
Confidence 124565521 56788888899999999999999999986431 11222 678888873
Q ss_pred cccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeC-----CEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 265 FNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVAN-----GVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 265 ~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
.++.|+++|+++|+++|+..... ...+. +.+ +.+|+++. +|.|+++|+++|+++|+++.
T Consensus 138 ----------~dg~v~a~d~~tG~~~W~~~~~~---~~~~~-~~~~~~~~~~v~~~~~--dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 138 ----------TEYTITMYDTKTRELRWNATYFD---YAASL-PEDDVDYKMSHFVSNG--DGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp ----------EEEEEECCCSSSSSCCCEEEEEE---ECCBC-CCCCTTCCCCEEEEET--SCEEEEECTTTCCEEEEEEC
T ss_pred ----------cCCEEEEEECCCCCEEEeEeccc---ccCcc-ccCCccccceEEEECC--CCEEEEEECCCCcEEEEecC
Confidence 34789999999999999987532 12222 333 67888874 89999999999999999997
Q ss_pred CCceecceEEe-CCEEEEEeCceeEeecCCccCCCCC----eEEEEE
Q 040693 340 GATIYGGASVS-NGCIYMGNGYKVTVGFGNKNFTSGT----SLYAFC 381 (382)
Q Consensus 340 ~~~~~~~p~~~-~g~lyv~~~~g~~~~~~~~~~~~g~----~l~~~~ 381 (382)
+......+++. ++.+|+....-.-..++++|..+|+ .+|.|.
T Consensus 202 ~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~tG~~~~~~~W~~~ 248 (369)
T 2hz6_A 202 ASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMSGEVGRITKWKYP 248 (369)
T ss_dssp SSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCceEEEEEecCCceEeccceeecccceeeeehhcCCcccceeeeec
Confidence 76555444442 4555543211011236889998998 888765
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.7e-20 Score=169.36 Aligned_cols=227 Identities=10% Similarity=0.101 Sum_probs=147.5
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|++||++||+++|++....... .....+.++++ +++ +.+
T Consensus 14 ~~~v~~~d~~tG~~~w~~~~~~~~~------------~~~~~~~pdG~-ilv-s~~------------------------ 55 (276)
T 3no2_A 14 WNKIAIINKDTKEIVWEYPLEKGWE------------CNSVAATKAGE-ILF-SYS------------------------ 55 (276)
T ss_dssp CSEEEEEETTTTEEEEEEECCTTCC------------CCEEEECTTSC-EEE-ECB------------------------
T ss_pred CCEEEEEECCCCeEEEEeCCCccCC------------CcCeEECCCCC-EEE-eCC------------------------
Confidence 8899999999999999998732100 01345555544 555 332
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
..|+++|+ +|+++|++....... + .+.. ...+ +..+++...
T Consensus 56 ---------~~V~~~d~-~G~~~W~~~~~~~~~----------------------~-~~~~---~~~d---G~~lv~~~~ 96 (276)
T 3no2_A 56 ---------KGAKMITR-DGRELWNIAAPAGCE----------------------M-QTAR---ILPD---GNALVAWCG 96 (276)
T ss_dssp ---------SEEEEECT-TSCEEEEEECCTTCE----------------------E-EEEE---ECTT---SCEEEEEES
T ss_pred ---------CCEEEECC-CCCEEEEEcCCCCcc----------------------c-cccE---ECCC---CCEEEEecC
Confidence 68999999 899999998753210 0 0000 1111 456666555
Q ss_pred -CcEEEEEeCCCCCeeeeeccCCCCCCCCc--c--cceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCc
Q 040693 214 -SGFAWALDRDSGSLIWSMEAGPGGLGGGA--M--WGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGN 288 (382)
Q Consensus 214 -~g~l~ald~~tG~~~W~~~~~~~~~~g~~--~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~ 288 (382)
++.++++|+ +|+++|++...... .+.. . ..+..++++++.. ...+.|++||++ |+
T Consensus 97 ~~~~v~~vd~-~Gk~l~~~~~~~~~-~~~~~~~~~v~~~~~G~~lv~~-----------------~~~~~v~~~d~~-G~ 156 (276)
T 3no2_A 97 HPSTILEVNM-KGEVLSKTEFETGI-ERPHAQFRQINKNKKGNYLVPL-----------------FATSEVREIAPN-GQ 156 (276)
T ss_dssp TTEEEEEECT-TSCEEEEEEECCSC-SSGGGSCSCCEECTTSCEEEEE-----------------TTTTEEEEECTT-SC
T ss_pred CCCEEEEEeC-CCCEEEEEeccCCC-CcccccccCceECCCCCEEEEe-----------------cCCCEEEEECCC-CC
Confidence 789999997 79999999865321 1110 1 1112245555543 335889999998 99
Q ss_pred EEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC----c---eecceEEeCCEEEEEeCce
Q 040693 289 VLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA----T---IYGGASVSNGCIYMGNGYK 361 (382)
Q Consensus 289 ~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~----~---~~~~p~~~~g~lyv~~~~g 361 (382)
++|++..+.. ... .+...++.+++... ..++|++||++||+++|++.... . ..+.+...+|.+|+++..|
T Consensus 157 ~~w~~~~~~~-~~~-~~~~~~g~~~v~~~-~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g 233 (276)
T 3no2_A 157 LLNSVKLSGT-PFS-SAFLDNGDCLVACG-DAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG 233 (276)
T ss_dssp EEEEEECSSC-CCE-EEECTTSCEEEECB-TTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred EEEEEECCCC-ccc-eeEcCCCCEEEEeC-CCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence 9999987642 222 33344554444432 36789999999999999997431 1 2234455799999998544
Q ss_pred e--------EeecCCccCCCCCeEEEEE
Q 040693 362 V--------TVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 362 ~--------~~~~~~~~~~~g~~l~~~~ 381 (382)
. ...+++++. +|+++|.|.
T Consensus 234 ~~~~~~~~~~~~~~~~~~-~g~~~W~~~ 260 (276)
T 3no2_A 234 HDREAGKGKHPQLVEIDS-EGKVVWQLN 260 (276)
T ss_dssp TCTTGGGSCCCSEEEECT-TSBEEEEEC
T ss_pred ccccccccCCceEEEECC-CCCEEEEec
Confidence 3 235778776 999999984
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-19 Score=165.43 Aligned_cols=160 Identities=22% Similarity=0.386 Sum_probs=120.3
Q ss_pred CcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEE
Q 040693 141 HSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 141 ~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
.++.|+++|++ |+.+|++...... ..++++. .++.|++++ +.|+++
T Consensus 155 ~~~~l~~~d~~-g~~~~~~~~~~~~------------------------~~~~~~d-------~~g~l~v~t--~~l~~~ 200 (330)
T 3hxj_A 155 NDNYLYAINPD-GTEKWRFKTNDAI------------------------TSAASIG-------KDGTIYFGS--DKVYAI 200 (330)
T ss_dssp TTSEEEEECTT-SCEEEEEECSSCC------------------------CSCCEEC-------TTCCEEEES--SSEEEE
T ss_pred CCCEEEEECCC-CCEeEEEecCCCc------------------------eeeeEEc-------CCCEEEEEe--CEEEEE
Confidence 34899999998 9999999865331 1234331 256688888 669999
Q ss_pred eCCCCCeeeeeccCCCCCCCCcccceeee-CCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 221 DRDSGSLIWSMEAGPGGLGGGAMWGAATD-ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
| .+|+.+|++.... .....+..+ ++.||++. ..+.|+++| .+|+.+|++.....
T Consensus 201 d-~~g~~~~~~~~~~-----~~~~~~~~~~~g~l~v~t-----------------~~~gl~~~~-~~g~~~~~~~~~~~- 255 (330)
T 3hxj_A 201 N-PDGTEKWNFYAGY-----WTVTRPAISEDGTIYVTS-----------------LDGHLYAIN-PDGTEKWRFKTGKR- 255 (330)
T ss_dssp C-TTSCEEEEECCSS-----CCCSCCEECTTSCEEEEE-----------------TTTEEEEEC-TTSCEEEEEECSSC-
T ss_pred C-CCCcEEEEEccCC-----cceeceEECCCCeEEEEc-----------------CCCeEEEEC-CCCCEeEEeeCCCC-
Confidence 9 7899999998543 133344444 55899873 447899998 58999999986543
Q ss_pred CCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeE
Q 040693 300 TAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVT 363 (382)
Q Consensus 300 ~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~ 363 (382)
... .+.++ ++.+|+++. +|.|+++|+ +|+++|++..+.....+++. .+++||+++.+|.+
T Consensus 256 ~~~-~~~~~~~g~l~v~t~--~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~ 317 (330)
T 3hxj_A 256 IES-SPVIGNTDTIYFGSY--DGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIYFGTRNGKF 317 (330)
T ss_dssp CCS-CCEECTTSCEEEECT--TCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEEEECTTSCE
T ss_pred ccc-cceEcCCCeEEEecC--CCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEEEEcCCCeE
Confidence 223 34455 789999984 789999997 79999999988777788888 88999999998773
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-20 Score=174.19 Aligned_cols=245 Identities=12% Similarity=0.075 Sum_probs=143.2
Q ss_pred EcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCC
Q 040693 30 YKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGN 109 (382)
Q Consensus 30 ~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~ 109 (382)
.++.||+++. +|.|+|||++||+++|+++... ... +-... .+... ..+.+|+...
T Consensus 9 ~~~~V~v~t~--------------dG~l~Ald~~tG~~~W~~~~~~-~~p-~~~~~-------~~~~~-~~~~~~vv~p- 63 (339)
T 2be1_A 9 LSDILIAADV--------------EGGLHAVDRRNGHIIWSIEPEN-FQP-LIEIQ-------EPSRL-ETYETLIIEP- 63 (339)
T ss_dssp EEEEEEEEET--------------TSCEEEEETTTTEEEEEECGGG-SCC-SEECC-------CSCTT-TSSEEEEECC-
T ss_pred eCCEEEEEeC--------------CCeEEEEECCCCcEEEEecCCc-cCC-cEEec-------CCccc-cCCcEEEEEE-
Confidence 4578999997 9999999999999999998751 000 00000 01111 2335555421
Q ss_pred CCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCC
Q 040693 110 LYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADF 189 (382)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (382)
..+|.|+|+|+.+|+.+|.+..+.... ..| .-.
T Consensus 64 ------------------------------~~dG~l~a~~~~~G~~~~~~~~~~lv~--------~SP---------~~~ 96 (339)
T 2be1_A 64 ------------------------------FGDGNIYYFNAHQGLQKLPLSIRQLVS--------TSP---------LHL 96 (339)
T ss_dssp ------------------------------STTTEEEEEETTTEEEEEEEEHHHHHT--------TCS---------EEE
T ss_pred ------------------------------CCCCEEEEEECCCCcEEeeecccccee--------ccc---------ccc
Confidence 124999999999999999988764310 000 001
Q ss_pred CCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC--CCccccee-------eeCCeEEEEecCc
Q 040693 190 GEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG--GGAMWGAA-------TDERRIYTNIANS 260 (382)
Q Consensus 190 ~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~--g~~~~~~~-------~~~~~v~~~~~~~ 260 (382)
.+.|++.+.- .-..++.||+++.+|.++|+|..||+++|++....+... ......+. ..++.||++..
T Consensus 97 ~~~pvv~~~~-~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~-- 173 (339)
T 2be1_A 97 KTNIVVNDSG-KIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKT-- 173 (339)
T ss_dssp ECC-----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEE--
T ss_pred CCCceeeccc-ccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecc--
Confidence 2445551100 000278999999999999999999999999987532100 00111111 12467887632
Q ss_pred cccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCC--CCCCcce-----EEeCCEEEEeeecCCCcEEEEeCCCCcE
Q 040693 261 QHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN--GTAPGPV-----TVANGVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 261 ~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~~~~-----~~~~~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
...+.+++ ++|+ +|+.+.... .....++ ...++.+|+++. +|.|++||.++|++
T Consensus 174 ---------------~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~--dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 174 ---------------IFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFR--DKSLLASDLDFRIA 234 (339)
T ss_dssp ---------------EEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEET--TTEEEEECSTTCCE
T ss_pred ---------------eEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECC--CCEEEEEECCCCcE
Confidence 24566666 7898 899764320 0011111 112355566664 99999999999999
Q ss_pred eE-EEecCCce-----------------ecceEE-------eCCEEEEE-eCceeEeecCCccC
Q 040693 334 LW-SYDTGATI-----------------YGGASV-------SNGCIYMG-NGYKVTVGFGNKNF 371 (382)
Q Consensus 334 lw-~~~~~~~~-----------------~~~p~~-------~~g~lyv~-~~~g~~~~~~~~~~ 371 (382)
+| +.+++.++ .++|+. .++++|+. +.+|. +||+..
T Consensus 235 ~W~~~~l~sPv~~~~dv~~~~~~g~~v~~~~P~~~~~~~~~~~~~v~v~~t~~G~---~~Als~ 295 (339)
T 2be1_A 235 RWVSPTFPGIIVGLFDVFNDLRTNENILVPHPFNPGDHESISSNKVYLDQTSNLS---WFALSS 295 (339)
T ss_dssp EEECCCCSSCEEEEEEEEEETTTTEEEEEECCCCC--------CCEEEEECTTCC---EEEEET
T ss_pred EEEeecCCCCeEEEEEEEEecCCCCEEEecCCCcccccccccCCeEEEEECCCCc---EEEecC
Confidence 99 66665432 245544 57888884 55655 455543
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.6e-18 Score=156.80 Aligned_cols=232 Identities=13% Similarity=0.187 Sum_probs=147.1
Q ss_pred CCcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGK 80 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~ 80 (382)
++|.+|||++|+++.+.. .......+.-++.+++.. ++.|+++|+ +|+++|++......
T Consensus 19 ~~d~~tG~~~w~~~~~~~--~~~~~~~~~pdG~ilvs~---------------~~~V~~~d~-~G~~~W~~~~~~~~--- 77 (276)
T 3no2_A 19 IINKDTKEIVWEYPLEKG--WECNSVAATKAGEILFSY---------------SKGAKMITR-DGRELWNIAAPAGC--- 77 (276)
T ss_dssp EEETTTTEEEEEEECCTT--CCCCEEEECTTSCEEEEC---------------BSEEEEECT-TSCEEEEEECCTTC---
T ss_pred EEECCCCeEEEEeCCCcc--CCCcCeEECCCCCEEEeC---------------CCCEEEECC-CCCEEEEEcCCCCc---
Confidence 378899999999997531 112233344477888733 667999999 99999999873111
Q ss_pred CCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEe
Q 040693 81 LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160 (382)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~ 160 (382)
.. .+....++++.++...+. .+.+++||+ +|+++|++.
T Consensus 78 -------~~--~~~~~~~dG~~lv~~~~~--------------------------------~~~v~~vd~-~Gk~l~~~~ 115 (276)
T 3no2_A 78 -------EM--QTARILPDGNALVAWCGH--------------------------------PSTILEVNM-KGEVLSKTE 115 (276)
T ss_dssp -------EE--EEEEECTTSCEEEEEEST--------------------------------TEEEEEECT-TSCEEEEEE
T ss_pred -------cc--cccEECCCCCEEEEecCC--------------------------------CCEEEEEeC-CCCEEEEEe
Confidence 00 123444555565554441 278999997 799999998
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCC
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGG 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g 240 (382)
......- . . ..|..+.... .+++|++...++.++++|++ |+++|++..+.
T Consensus 116 ~~~~~~~----~-~----------------~~~~~v~~~~---~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~----- 165 (276)
T 3no2_A 116 FETGIER----P-H----------------AQFRQINKNK---KGNYLVPLFATSEVREIAPN-GQLLNSVKLSG----- 165 (276)
T ss_dssp ECCSCSS----G-G----------------GSCSCCEECT---TSCEEEEETTTTEEEEECTT-SCEEEEEECSS-----
T ss_pred ccCCCCc----c-c----------------ccccCceECC---CCCEEEEecCCCEEEEECCC-CCEEEEEECCC-----
Confidence 7532100 0 0 0011111111 25677788889999999998 99999998642
Q ss_pred CcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC---CCC--CCcceEEeCCEEEEe
Q 040693 241 GAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS---NGT--APGPVTVANGVLFGG 315 (382)
Q Consensus 241 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~---~~~--~~~~~~~~~~~v~~~ 315 (382)
.....+...++.+++.. ...++|+++|++||+++|++.... ... ..+.....++.+|++
T Consensus 166 ~~~~~~~~~~g~~~v~~----------------~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~ 229 (276)
T 3no2_A 166 TPFSSAFLDNGDCLVAC----------------GDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYIC 229 (276)
T ss_dssp CCCEEEECTTSCEEEEC----------------BTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEE
T ss_pred CccceeEcCCCCEEEEe----------------CCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEE
Confidence 12222333344444432 224679999999999999996321 111 123333457788887
Q ss_pred ee-c--------CCCcEEEEeCCCCcEeEEEecCCc
Q 040693 316 ST-Y--------RQGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 316 ~~-~--------~~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
+. + ..++++.||+ +|+++|++.....
T Consensus 230 ~~~g~~~~~~~~~~~~~~~~~~-~g~~~W~~~~~~~ 264 (276)
T 3no2_A 230 NWQGHDREAGKGKHPQLVEIDS-EGKVVWQLNDKVK 264 (276)
T ss_dssp EECTTCTTGGGSCCCSEEEECT-TSBEEEEECCTTT
T ss_pred eccCccccccccCCceEEEECC-CCCEEEEecCccc
Confidence 74 1 1346999986 6999999987653
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-16 Score=151.47 Aligned_cols=187 Identities=10% Similarity=0.093 Sum_probs=119.0
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE--ccCcEEEEE
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV--QKSGFAWAL 220 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~--~~~g~l~al 220 (382)
|.|+|||++||+++|+++... .+|.+.........++.+++. +.+|.|+++
T Consensus 20 G~l~Ald~~tG~~~W~~~~~~---------------------------~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~ 72 (339)
T 2be1_A 20 GGLHAVDRRNGHIIWSIEPEN---------------------------FQPLIEIQEPSRLETYETLIIEPFGDGNIYYF 72 (339)
T ss_dssp SCEEEEETTTTEEEEEECGGG---------------------------SCCSEECCCSCTTTSSEEEEECCSTTTEEEEE
T ss_pred CeEEEEECCCCcEEEEecCCc---------------------------cCCcEEecCCccccCCcEEEEEECCCCEEEEE
Confidence 999999999999999998761 112121000000002344444 679999999
Q ss_pred eCCCCCeeeeeccCCCCCCC-Cc-ccceee-------eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 221 DRDSGSLIWSMEAGPGGLGG-GA-MWGAAT-------DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g-~~-~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
|.++|..+|.+..+...... .. ...|++ .++.||++ ...++++|+|++||+++|
T Consensus 73 ~~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~G-----------------s~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 73 NAHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTG-----------------SMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp ETTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEEC-----------------EEEEEEEEEETTTCCEEE
T ss_pred ECCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEE-----------------ecCCEEEEEECCCCcEEE
Confidence 99999999988754210000 00 122344 78889998 445899999999999999
Q ss_pred eecCCCCCC------CCcceE------EeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc---eec------ceEEe
Q 040693 292 STADPSNGT------APGPVT------VANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT---IYG------GASVS 350 (382)
Q Consensus 292 ~~~~~~~~~------~~~~~~------~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~---~~~------~p~~~ 350 (382)
+........ ...+.. ..++.||++.. ...+.+.+ ++|+ +|+++.+.- ... .....
T Consensus 136 ~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~--~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~ 211 (339)
T 2be1_A 136 AFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKT--IFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSK 211 (339)
T ss_dssp EESTTCBCC--------------------CCEEEEEEE--EEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCS
T ss_pred EEecCCCcccccccccccccccccccccCCCeEEEecc--eEEEEEEC-CCCC-eEEEeccccccccccccccccccccc
Confidence 998764211 111221 23578888774 66677777 6798 898765321 011 11123
Q ss_pred CCEEEEEeCceeEeecCCccCCCCCeEE-EE
Q 040693 351 NGCIYMGNGYKVTVGFGNKNFTSGTSLY-AF 380 (382)
Q Consensus 351 ~g~lyv~~~~g~~~~~~~~~~~~g~~l~-~~ 380 (382)
++++|+++.+|. ++++|..+|+.+| ..
T Consensus 212 Dg~~~~~~~dg~---v~A~d~~~G~~~W~~~ 239 (339)
T 2be1_A 212 DGMCIAPFRDKS---LLASDLDFRIARWVSP 239 (339)
T ss_dssp SSCCEEEETTTE---EEEECSTTCCEEEECC
T ss_pred CCcEEEECCCCE---EEEEECCCCcEEEEee
Confidence 578899988887 6889999999999 44
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.4e-12 Score=117.17 Aligned_cols=272 Identities=15% Similarity=0.151 Sum_probs=175.2
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEE--cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYY--KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
+|+++|+.+++...+..+. ...+. +..+|++... ++.|..+|+++|+++++.........
T Consensus 74 ~d~~~~~~~~~~~~~~~~~-----~~~~s~dg~~l~v~~~~-------------~~~v~~~d~~~~~~~~~~~~~~~~~~ 135 (353)
T 3vgz_A 74 LDPVTLEVTQAIHNDLKPF-----GATINNTTQTLWFGNTV-------------NSAVTAIDAKTGEVKGRLVLDDRKRT 135 (353)
T ss_dssp ECTTTCCEEEEEEESSCCC-----SEEEETTTTEEEEEETT-------------TTEEEEEETTTCCEEEEEESCCCCCC
T ss_pred EcCCCCeEEEEEecCCCcc-----eEEECCCCCEEEEEecC-------------CCEEEEEeCCCCeeEEEEecCCCccc
Confidence 5788899888887643211 22232 3458876642 67999999999999999887422110
Q ss_pred CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEE
Q 040693 80 KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~ 159 (382)
. + +....-....++++++.+|+.... .++.|+.+|..+++.++..
T Consensus 136 --~-~-~~~~~~~~~~~s~dg~~l~~~~~~-------------------------------~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 136 --E-E-VRPLQPRELVADDATNTVYISGIG-------------------------------KESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp --S-S-CCCCEEEEEEEETTTTEEEEEEES-------------------------------SSCEEEEEETTTTEEEEEE
T ss_pred --c-c-cCCCCCceEEECCCCCEEEEEecC-------------------------------CCceEEEEcCCCCceEEEe
Confidence 0 0 000000125788888889887621 1378999999999999988
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG 239 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 239 (382)
+..... .....+ ..+ +..+++...++.++.+|..+|+.++..........
T Consensus 181 ~~~~~~------------------------~~~~~~---s~d---g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~ 230 (353)
T 3vgz_A 181 QNTGKM------------------------STGLAL---DSE---GKRLYTTNADGELITIDTADNKILSRKKLLDDGKE 230 (353)
T ss_dssp CCCCTT------------------------CCCCEE---ETT---TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSC
T ss_pred cCCCCc------------------------cceEEE---CCC---CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCC
Confidence 733221 011111 112 46788888899999999999999999886432111
Q ss_pred CCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEe
Q 040693 240 GGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGG 315 (382)
Q Consensus 240 g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~ 315 (382)
.......+ +++.+|+... ..+.|+.+|+++|+.+++...+.. ..+.+ +++.+|++
T Consensus 231 -~~~~~~~~s~dg~~l~~~~~----------------~~~~v~~~d~~~~~~~~~~~~~~~----~~~~~s~dg~~l~v~ 289 (353)
T 3vgz_A 231 -HFFINISLDTARQRAFITDS----------------KAAEVLVVDTRNGNILAKVAAPES----LAVLFNPARNEAYVT 289 (353)
T ss_dssp -CCEEEEEEETTTTEEEEEES----------------SSSEEEEEETTTCCEEEEEECSSC----CCEEEETTTTEEEEE
T ss_pred -cccceEEECCCCCEEEEEeC----------------CCCEEEEEECCCCcEEEEEEcCCC----ceEEECCCCCEEEEE
Confidence 11112222 5677888632 347899999999999999887542 12333 34678887
Q ss_pred eecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eC-CEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 316 STYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SN-GCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 316 ~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~-g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.. .++.|..+|.++++++..++.+... ....+ .+ ..||+++..+.. -.....++..++.++|
T Consensus 290 ~~-~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~---~~~~~~~~~~v~~i~l 353 (353)
T 3vgz_A 290 HR-QAGKVSVIDAKSYKVVKTFDTPTHP-NSLALSADGKTLYVSVKQKST---KQQEATQPDDVIRIAL 353 (353)
T ss_dssp ET-TTTEEEEEETTTTEEEEEEECCSEE-EEEEECTTSCEEEEEEECCCB---TTBCCSSCEEEEEEEC
T ss_pred EC-CCCeEEEEECCCCeEEEEEecCCCC-CeEEEcCCCCEEEEEEccccc---ccccccCCCcEEEEeC
Confidence 63 4789999999999999998876532 23333 34 458888765442 1234455677777764
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-12 Score=119.62 Aligned_cols=274 Identities=13% Similarity=0.067 Sum_probs=168.7
Q ss_pred CcCCCCceeeeeecC--cCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 2 VKRSNGKLVWKTKLD--DHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 2 ld~~tGk~~W~~~~~--~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
||.+||++.-..... ....+......++.++++|++... ++.|..+|++||+++.+.......
T Consensus 22 ~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-------------~~~v~viD~~t~~~~~~i~~~~~p-- 86 (328)
T 3dsm_A 22 YDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-------------SHVIFAIDINTFKEVGRITGFTSP-- 86 (328)
T ss_dssp EETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-------------GTEEEEEETTTCCEEEEEECCSSE--
T ss_pred EECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-------------CCEEEEEECcccEEEEEcCCCCCC--
Confidence 678888875433110 001111122345678999998862 678999999999999988532110
Q ss_pred CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEE
Q 040693 80 KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~ 159 (382)
...+++++ +.+|+.... ++.|..+|++|+++.++.
T Consensus 87 ------------~~i~~~~~-g~lyv~~~~--------------------------------~~~v~~iD~~t~~~~~~i 121 (328)
T 3dsm_A 87 ------------RYIHFLSD-EKAYVTQIW--------------------------------DYRIFIINPKTYEITGYI 121 (328)
T ss_dssp ------------EEEEEEET-TEEEEEEBS--------------------------------CSEEEEEETTTTEEEEEE
T ss_pred ------------cEEEEeCC-CeEEEEECC--------------------------------CCeEEEEECCCCeEEEEE
Confidence 12345444 489997632 389999999999999988
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc--cCcEEEEEeCCCCCeeeeeccCCCC
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ--KSGFAWALDRDSGSLIWSMEAGPGG 237 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~--~~g~l~ald~~tG~~~W~~~~~~~~ 237 (382)
+...... ....+....+ .++.+++.. .++.+..+|.+|+++++..+.+..
T Consensus 122 ~~g~~~~-------------------~~~~p~~i~~--------~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~- 173 (328)
T 3dsm_A 122 ECPDMDM-------------------ESGSTEQMVQ--------YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQ- 173 (328)
T ss_dssp ECTTCCT-------------------TTCBCCCEEE--------ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSC-
T ss_pred EcCCccc-------------------cCCCcceEEE--------ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCC-
Confidence 7654100 0000111122 156677765 378999999999999998876431
Q ss_pred CCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe--CCEEEE
Q 040693 238 LGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA--NGVLFG 314 (382)
Q Consensus 238 ~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~ 314 (382)
. ..... .++.+|+........ .+ . ....+.|+.||++++++..++..+... ....+.+. ++++|+
T Consensus 174 ----p-~~i~~~~dG~l~v~~~~~~~~----~~-~-~~~~~~v~~id~~t~~v~~~~~~~~g~-~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 174 ----P-TSLVMDKYNKMWTITDGGYEG----SP-Y-GYEAPSLYRIDAETFTVEKQFKFKLGD-WPSEVQLNGTRDTLYW 241 (328)
T ss_dssp ----B-CCCEECTTSEEEEEBCCBCTT----CS-S-CBCCCEEEEEETTTTEEEEEEECCTTC-CCEEEEECTTSCEEEE
T ss_pred ----c-cceEEcCCCCEEEEECCCccC----Cc-c-ccCCceEEEEECCCCeEEEEEecCCCC-CceeEEEecCCCEEEE
Confidence 1 12222 356788774431000 00 0 001378999999999998887765321 23344454 578888
Q ss_pred eeecCCCcEEEEeCCCCcEeEEEecC--CceecceEE--eCCEEEEEe----CceeEeecCCccCCCCCeEEEEEC
Q 040693 315 GSTYRQGPIYAMDVKTGKILWSYDTG--ATIYGGASV--SNGCIYMGN----GYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 315 ~~~~~~g~l~~ld~~tG~ilw~~~~~--~~~~~~p~~--~~g~lyv~~----~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.. . .|+.+|.+++++.-..-+. .......++ .+++|||++ .... .++.++.. |+.++.|.+
T Consensus 242 ~~---~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~--~V~v~d~~-g~~~~~i~~ 310 (328)
T 3dsm_A 242 IN---N-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQG--IVYRYSPQ-GKLIDEFYV 310 (328)
T ss_dssp ES---S-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEE--EEEEECTT-CCEEEEEEE
T ss_pred Ec---c-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCC--EEEEECCC-CCEEEEEEe
Confidence 65 3 9999999999874211111 122233445 479999998 3323 34667777 999998864
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-11 Score=115.92 Aligned_cols=250 Identities=16% Similarity=0.158 Sum_probs=163.4
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
++.+|++........ .++.|+.+|+++|+++++....... ....+++++..+|+....
T Consensus 52 g~~l~~~~~~~~~~~-------~~~~v~~~d~~~~~~~~~~~~~~~~--------------~~~~~s~dg~~l~v~~~~- 109 (353)
T 3vgz_A 52 ENALWLATSQSRKLD-------KGGVVYRLDPVTLEVTQAIHNDLKP--------------FGATINNTTQTLWFGNTV- 109 (353)
T ss_dssp TTEEEEEECCCTTTE-------ESEEEEEECTTTCCEEEEEEESSCC--------------CSEEEETTTTEEEEEETT-
T ss_pred CCEEEEEcCCCcCCC-------CCccEEEEcCCCCeEEEEEecCCCc--------------ceEEECCCCCEEEEEecC-
Confidence 357888775321111 1568999999999999998874221 246788888888887653
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFG 190 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (382)
++.|..+|+++|++++.......... ....+
T Consensus 110 -------------------------------~~~v~~~d~~~~~~~~~~~~~~~~~~------------------~~~~~ 140 (353)
T 3vgz_A 110 -------------------------------NSAVTAIDAKTGEVKGRLVLDDRKRT------------------EEVRP 140 (353)
T ss_dssp -------------------------------TTEEEEEETTTCCEEEEEESCCCCCC------------------SSCCC
T ss_pred -------------------------------CCEEEEEeCCCCeeEEEEecCCCccc------------------cccCC
Confidence 37999999999999999887543100 00001
Q ss_pred CCceEEEeeeCceeecEEEEEc--cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccc
Q 040693 191 EAPMMLSMYRNKVKHDIVVAVQ--KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFN 266 (382)
Q Consensus 191 ~~p~~~~~~~~g~~~~~v~~~~--~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~ 266 (382)
..|.-..+..+| ..+++.. .++.++.+|.++++.++..+.... ....... +++.+|+.
T Consensus 141 ~~~~~~~~s~dg---~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~dg~~l~~~---------- 202 (353)
T 3vgz_A 141 LQPRELVADDAT---NTVYISGIGKESVIWVVDGGNIKLKTAIQNTGK-----MSTGLALDSEGKRLYTT---------- 202 (353)
T ss_dssp CEEEEEEEETTT---TEEEEEEESSSCEEEEEETTTTEEEEEECCCCT-----TCCCCEEETTTTEEEEE----------
T ss_pred CCCceEEECCCC---CEEEEEecCCCceEEEEcCCCCceEEEecCCCC-----ccceEEECCCCCEEEEE----------
Confidence 112222333333 4455554 478899999999999998873211 1112222 67788887
Q ss_pred cCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCC--cceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc
Q 040693 267 LKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAP--GPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 267 ~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~--~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
...+.+..+|+++++.+++.......... ..+.+ +++.+|++.. .++.|+.+|.++|+++.+.+.+..
T Consensus 203 -------~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 203 -------NADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS-KAAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp -------CTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES-SSSEEEEEETTTCCEEEEEECSSC
T ss_pred -------cCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEEEEEcCCC
Confidence 34578999999999999998864321111 11333 3567888774 458999999999999999987654
Q ss_pred eecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 343 IYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 343 ~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
....+ .++.+|+++..+..+ ..+|..+++.+..+.
T Consensus 275 --~~~~~s~dg~~l~v~~~~~~~v--~~~d~~~~~~~~~~~ 311 (353)
T 3vgz_A 275 --LAVLFNPARNEAYVTHRQAGKV--SVIDAKSYKVVKTFD 311 (353)
T ss_dssp --CCEEEETTTTEEEEEETTTTEE--EEEETTTTEEEEEEE
T ss_pred --ceEEECCCCCEEEEEECCCCeE--EEEECCCCeEEEEEe
Confidence 23333 345699988643333 345677788876654
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.8e-10 Score=107.26 Aligned_cols=227 Identities=13% Similarity=0.085 Sum_probs=146.7
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|++||++.-....... .. .-|... ....+ +++.+|++...
T Consensus 16 ~~~l~~~d~~t~~~~~~i~~~~n-~~----~lg~~~--~~i~~--~~~~lyv~~~~------------------------ 62 (328)
T 3dsm_A 16 NATLSYYDPATCEVENEVFYRAN-GF----KLGDVA--QSMVI--RDGIGWIVVNN------------------------ 62 (328)
T ss_dssp CBEEEEEETTTTEEECSHHHHHH-SS----CCBSCE--EEEEE--ETTEEEEEEGG------------------------
T ss_pred CceEEEEECCCCEEhhhhHhhhc-Cc----ccCccc--eEEEE--ECCEEEEEEcC------------------------
Confidence 68999999999998754422100 00 001101 01233 35788888753
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc-
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ- 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~- 212 (382)
.+.|..+|++||+++.++.... .|.-..+. .++.+|+..
T Consensus 63 --------~~~v~viD~~t~~~~~~i~~~~----------------------------~p~~i~~~----~~g~lyv~~~ 102 (328)
T 3dsm_A 63 --------SHVIFAIDINTFKEVGRITGFT----------------------------SPRYIHFL----SDEKAYVTQI 102 (328)
T ss_dssp --------GTEEEEEETTTCCEEEEEECCS----------------------------SEEEEEEE----ETTEEEEEEB
T ss_pred --------CCEEEEEECcccEEEEEcCCCC----------------------------CCcEEEEe----CCCeEEEEEC
Confidence 3789999999999999885321 23222221 134677776
Q ss_pred cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
.++.+..+|.+|+++.++.+.+............+.+++.+|++..+ ..+.|..||+++++++++
T Consensus 103 ~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~---------------~~~~v~viD~~t~~~~~~ 167 (328)
T 3dsm_A 103 WDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWS---------------YQNRILKIDTETDKVVDE 167 (328)
T ss_dssp SCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEECT---------------TCCEEEEEETTTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcCC---------------CCCEEEEEECCCCeEEEE
Confidence 78899999999999999888653110000122333488999997321 247899999999999999
Q ss_pred ecCCCCCCCCcceEEe-CCEEEEeeecC---------CCcEEEEeCCCCcEeEEEecCCc-eecceEEe--CCEEEEEeC
Q 040693 293 TADPSNGTAPGPVTVA-NGVLFGGSTYR---------QGPIYAMDVKTGKILWSYDTGAT-IYGGASVS--NGCIYMGNG 359 (382)
Q Consensus 293 ~~~~~~~~~~~~~~~~-~~~v~~~~~~~---------~g~l~~ld~~tG~ilw~~~~~~~-~~~~p~~~--~g~lyv~~~ 359 (382)
++.... ...+.++ ++.+|+.+.+. .+.|+.+|+++++++.++.++.+ .-...++. +++||++++
T Consensus 168 i~~g~~---p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~ 244 (328)
T 3dsm_A 168 LTIGIQ---PTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN 244 (328)
T ss_dssp EECSSC---BCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred EEcCCC---ccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence 887542 1233343 57888877421 26899999999999988877532 22334443 688998876
Q ss_pred ceeEeecCCccCCCCCe
Q 040693 360 YKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 360 ~g~~~~~~~~~~~~g~~ 376 (382)
.++.+|..+++.
T Consensus 245 -----~v~~~d~~t~~~ 256 (328)
T 3dsm_A 245 -----DIWRMPVEADRV 256 (328)
T ss_dssp -----SEEEEETTCSSC
T ss_pred -----EEEEEECCCCce
Confidence 345677766664
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.2e-10 Score=106.20 Aligned_cols=260 Identities=14% Similarity=0.178 Sum_probs=166.3
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|+++|+.+.....+.. ...+..+| .+..+|++.. .++.|..+|.++|+++++.......
T Consensus 17 ~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~-------------~d~~i~v~d~~~~~~~~~~~~~~~v---- 76 (391)
T 1l0q_A 17 IDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANA-------------HSNDVSIIDTATNNVIATVPAGSSP---- 76 (391)
T ss_dssp EETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEG-------------GGTEEEEEETTTTEEEEEEECSSSE----
T ss_pred EECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECC-------------CCCeEEEEECCCCeEEEEEECCCCc----
Confidence 57788888887765432 11111111 1335666543 2789999999999999988763211
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
....+.+++..++++... ++.|+.+|..+|+.+.....
T Consensus 77 ----------~~~~~spdg~~l~~~~~~--------------------------------~~~v~v~d~~~~~~~~~~~~ 114 (391)
T 1l0q_A 77 ----------QGVAVSPDGKQVYVTNMA--------------------------------SSTLSVIDTTSNTVAGTVKT 114 (391)
T ss_dssp ----------EEEEECTTSSEEEEEETT--------------------------------TTEEEEEETTTTEEEEEEEC
T ss_pred ----------cceEECCCCCEEEEEECC--------------------------------CCEEEEEECCCCeEEEEEeC
Confidence 135677777788776543 37899999999999888764
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGG 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~ 241 (382)
... +.-..+..+| ..+++.+..++.++.+|..+++.+.......
T Consensus 115 ~~~----------------------------~~~~~~s~dg--~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~------ 158 (391)
T 1l0q_A 115 GKS----------------------------PLGLALSPDG--KKLYVTNNGDKTVSVINTVTKAVINTVSVGR------ 158 (391)
T ss_dssp SSS----------------------------EEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECCS------
T ss_pred CCC----------------------------cceEEECCCC--CEEEEEeCCCCEEEEEECCCCcEEEEEecCC------
Confidence 321 2122222333 3344677778999999999999998887532
Q ss_pred cccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeee
Q 040693 242 AMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGST 317 (382)
Q Consensus 242 ~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~ 317 (382)
....... ++..+|+.. ..++.|..+|+++++.+........ ...+.+ ++..++++..
T Consensus 159 ~~~~~~~~~dg~~l~~~~----------------~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~~g~~l~~~~~ 219 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVAN----------------FDSMSISVIDTVTNSVIDTVKVEAA---PSGIAVNPEGTKAYVTNV 219 (391)
T ss_dssp SEEEEEECTTSSEEEEEE----------------TTTTEEEEEETTTTEEEEEEECSSE---EEEEEECTTSSEEEEEEE
T ss_pred CcceEEECCCCCEEEEEe----------------CCCCEEEEEECCCCeEEEEEecCCC---ccceEECCCCCEEEEEec
Confidence 1122222 556776653 2347899999999998887765431 122223 2457777762
Q ss_pred c-CCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 318 Y-RQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 318 ~-~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
. .++.|+.+|.++++++..++..... ....+ .+..||++.+....+.+ +|..+|+.+..+.
T Consensus 220 ~~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~s~~~d~~v~v--~d~~~~~~~~~~~ 283 (391)
T 1l0q_A 220 DKYFNTVSMIDTGTNKITARIPVGPDP-AGIAVTPDGKKVYVALSFXNTVSV--IDTATNTITATMA 283 (391)
T ss_dssp CSSCCEEEEEETTTTEEEEEEECCSSE-EEEEECTTSSEEEEEETTTTEEEE--EETTTTEEEEEEE
T ss_pred CcCCCcEEEEECCCCeEEEEEecCCCc-cEEEEccCCCEEEEEcCCCCEEEE--EECCCCcEEEEEE
Confidence 1 2789999999999999988775533 23333 24568787654444444 4556688776654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.9e-09 Score=100.03 Aligned_cols=291 Identities=12% Similarity=0.057 Sum_probs=160.3
Q ss_pred CcCCCCceeeeeecCcC--ccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDH--ARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~--~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
+|+.+|+.+++..++.. ....+..+| .+..+|++.. .++.|+.+|+++|+++++........
T Consensus 16 ~d~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~v~~~-------------~~~~v~~~d~~~~~~~~~~~~~~~~~- 79 (337)
T 1pby_B 16 IDTEKMAVDKVITIADAGPTPMVPMVAP--GGRIAYATVN-------------KSESLVKIDLVTGETLGRIDLSTPEE- 79 (337)
T ss_dssp EETTTTEEEEEEECTTCTTCCCCEEECT--TSSEEEEEET-------------TTTEEEEEETTTCCEEEEEECCBTTE-
T ss_pred EECCCCcEEEEEEcCCCCCCccceEEcC--CCCEEEEEeC-------------CCCeEEEEECCCCCeEeeEEcCCccc-
Confidence 68889999988876541 011122222 1236777654 26789999999999999887632100
Q ss_pred CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEE
Q 040693 80 KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~ 159 (382)
.+... ....+++++..+|++.......+. .....++.|+.+|.++++.++..
T Consensus 80 -----~~~~~--~~~~~s~dg~~l~~~~~~~~~~~~---------------------~~~~~~~~i~v~d~~~~~~~~~~ 131 (337)
T 1pby_B 80 -----RVKSL--FGAALSPDGKTLAIYESPVRLELT---------------------HFEVQPTRVALYDAETLSRRKAF 131 (337)
T ss_dssp -----EEECT--TCEEECTTSSEEEEEEEEEEECSS---------------------CEEECCCEEEEEETTTTEEEEEE
T ss_pred -----ccccc--cceEECCCCCEEEEEecccccccc---------------------cccccCceEEEEECCCCcEEEEE
Confidence 00011 246788887788887521000000 00001378999999999999888
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG 239 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 239 (382)
...... ... .+..+ +..|++. ++.++.+|.++|++....+.....
T Consensus 132 ~~~~~~-------------------------~~~---~~s~d---g~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-- 176 (337)
T 1pby_B 132 EAPRQI-------------------------TML---AWARD---GSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-- 176 (337)
T ss_dssp ECCSSC-------------------------CCE---EECTT---SSCEEEE--SSSEEEEETTTTEEEEEECSTTTT--
T ss_pred eCCCCc-------------------------cee---EECCC---CCEEEEe--CCeEEEEECCCCcEeeeeeccccC--
Confidence 753220 011 11222 2345555 567999999999998777654310
Q ss_pred CCcccceeeeCCeEEEEecCcccc--cccc-----CCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCC
Q 040693 240 GGAMWGAATDERRIYTNIANSQHK--NFNL-----KPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANG 310 (382)
Q Consensus 240 g~~~~~~~~~~~~v~~~~~~~~~~--~~~~-----~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~ 310 (382)
....+. .++..+|+........ .+.. .+.........|..+|+++++.. +............+.+ ++.
T Consensus 177 ~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~ 253 (337)
T 1pby_B 177 AETYAQ--PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKT 253 (337)
T ss_dssp TTTBCC--CBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSS
T ss_pred CCceeC--CCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCC
Confidence 111111 1344444332110000 0000 00000011126899999999987 4443221111112333 245
Q ss_pred EEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 311 VLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 311 ~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.+|++ ++.|+.+|.++++++..++.+.... ...+ .+..||++..++. +..+|..+++.+..+.+
T Consensus 254 ~l~~~----~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~---i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 254 RAFGA----YNVLESFDLEKNASIKRVPLPHSYY-SVNVSTDGSTVWLGGALGD---LAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEEE----ESEEEEEETTTTEEEEEEECSSCCC-EEEECTTSCEEEEESBSSE---EEEEETTTCCEEEEEEC
T ss_pred EEEEe----CCeEEEEECCCCcCcceecCCCcee-eEEECCCCCEEEEEcCCCc---EEEEECcCCcEEEEEEc
Confidence 67765 4899999999999999988764332 3333 3456888755444 34467778998887753
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=8.5e-09 Score=100.51 Aligned_cols=252 Identities=12% Similarity=0.153 Sum_probs=165.0
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|.++|+.+.+...... .+ .+....++.++.+.. ++.|..+|.++|+.+.+......
T Consensus 144 wd~~~~~~~~~~~~h~~---~v-~~~~~~~~~l~s~~~--------------dg~i~vwd~~~~~~~~~~~~h~~----- 200 (445)
T 2ovr_B 144 WSAVTGKCLRTLVGHTG---GV-WSSQMRDNIIISGST--------------DRTLKVWNAETGECIHTLYGHTS----- 200 (445)
T ss_dssp EETTTCCEEEECCCCSS---CE-EEEEEETTEEEEEET--------------TSCEEEEETTTTEEEEEECCCSS-----
T ss_pred EECCCCcEEEEEcCCCC---CE-EEEEecCCEEEEEeC--------------CCeEEEEECCcCcEEEEECCCCC-----
Confidence 35566776665543321 11 123344677777665 89999999999999887653211
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
.+ ....+ ..+.++.+..+ +.|..+|..+|+.++....
T Consensus 201 ------~v--~~~~~--~~~~l~s~s~d---------------------------------g~i~~wd~~~~~~~~~~~~ 237 (445)
T 2ovr_B 201 ------TV--RCMHL--HEKRVVSGSRD---------------------------------ATLRVWDIETGQCLHVLMG 237 (445)
T ss_dssp ------CE--EEEEE--ETTEEEEEETT---------------------------------SEEEEEESSSCCEEEEEEC
T ss_pred ------cE--EEEEe--cCCEEEEEeCC---------------------------------CEEEEEECCCCcEEEEEcC
Confidence 01 11223 34566665543 8999999999999988765
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGG 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~ 241 (382)
.... +..+..+ +..++++..++.+..+|..+++.+..+.... .
T Consensus 238 ~~~~-----------------------------v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~ 280 (445)
T 2ovr_B 238 HVAA-----------------------------VRCVQYD---GRRVVSGAYDFMVKVWDPETETCLHTLQGHT-----N 280 (445)
T ss_dssp CSSC-----------------------------EEEEEEC---SSCEEEEETTSCEEEEEGGGTEEEEEECCCS-----S
T ss_pred Cccc-----------------------------EEEEEEC---CCEEEEEcCCCEEEEEECCCCcEeEEecCCC-----C
Confidence 4321 1111112 4678888899999999999999998886322 1
Q ss_pred cccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCC
Q 040693 242 AMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQG 321 (382)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g 321 (382)
.......++..++++ ..++.|..+|.++++.+.+...... ....+...++.++.++. +|
T Consensus 281 ~v~~~~~~~~~l~~~-----------------~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~~--dg 339 (445)
T 2ovr_B 281 RVYSLQFDGIHVVSG-----------------SLDTSIRVWDVETGNCIHTLTGHQS--LTSGMELKDNILVSGNA--DS 339 (445)
T ss_dssp CEEEEEECSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCCS--CEEEEEEETTEEEEEET--TS
T ss_pred ceEEEEECCCEEEEE-----------------eCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEEeCCEEEEEeC--CC
Confidence 333333466667666 3458899999999999988865432 23344456788887774 99
Q ss_pred cEEEEeCCCCcEeEEEecCC---ceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 322 PIYAMDVKTGKILWSYDTGA---TIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 322 ~l~~ld~~tG~ilw~~~~~~---~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.|..+|..+++.+..+.... ....+....++.|+.++.+|. +.+|. ..+|+.+..+
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~-v~iwd--~~~~~~~~~~ 398 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT-VKLWD--LKTGEFIRNL 398 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSE-EEEEE--TTTCCEEEEE
T ss_pred eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCe-EEEEE--CCCCceeeee
Confidence 99999999999999887532 223334445666666666765 44554 4557776654
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-09 Score=99.76 Aligned_cols=221 Identities=15% Similarity=0.200 Sum_probs=145.1
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++|+++......... ....+.+++..+|+....
T Consensus 11 d~~v~v~d~~~~~~~~~~~~~~~~--------------~~~~~s~dg~~l~~~~~~------------------------ 52 (391)
T 1l0q_A 11 SDNISVIDVTSNKVTATIPVGSNP--------------MGAVISPDGTKVYVANAH------------------------ 52 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSE--------------EEEEECTTSSEEEEEEGG------------------------
T ss_pred CCEEEEEECCCCeEEEEeecCCCc--------------ceEEECCCCCEEEEECCC------------------------
Confidence 889999999999999987753211 135677777778776532
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
++.|..+|..+|+.++....... +.-..+..++ ..+++.+..
T Consensus 53 --------d~~i~v~d~~~~~~~~~~~~~~~----------------------------v~~~~~spdg--~~l~~~~~~ 94 (391)
T 1l0q_A 53 --------SNDVSIIDTATNNVIATVPAGSS----------------------------PQGVAVSPDG--KQVYVTNMA 94 (391)
T ss_dssp --------GTEEEEEETTTTEEEEEEECSSS----------------------------EEEEEECTTS--SEEEEEETT
T ss_pred --------CCeEEEEECCCCeEEEEEECCCC----------------------------ccceEECCCC--CEEEEEECC
Confidence 38999999999999998876532 1112222233 233345556
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.++.+|..+++.+....... ......+ ++..+|+.. ..++.|..+|+++++.++
T Consensus 95 ~~~v~v~d~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~----------------~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 95 SSTLSVIDTTSNTVAGTVKTGK------SPLGLALSPDGKKLYVTN----------------NGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp TTEEEEEETTTTEEEEEEECSS------SEEEEEECTTSSEEEEEE----------------TTTTEEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCeEEEEEeCCC------CcceEEECCCCCEEEEEe----------------CCCCEEEEEECCCCcEEE
Confidence 7999999999999988877432 1222223 456676653 235789999999999998
Q ss_pred eecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeC---ceeEe
Q 040693 292 STADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNG---YKVTV 364 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~---~g~~~ 364 (382)
....... ...+.+ ++..+|+... .++.|+.+|..+++.+......... ....+ .+..||+++. ++. +
T Consensus 153 ~~~~~~~---~~~~~~~~dg~~l~~~~~-~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~-v 226 (391)
T 1l0q_A 153 TVSVGRS---PKGIAVTPDGTKVYVANF-DSMSISVIDTVTNSVIDTVKVEAAP-SGIAVNPEGTKAYVTNVDKYFNT-V 226 (391)
T ss_dssp EEECCSS---EEEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEEEEECSSEE-EEEEECTTSSEEEEEEECSSCCE-E
T ss_pred EEecCCC---cceEEECCCCCEEEEEeC-CCCEEEEEECCCCeEEEEEecCCCc-cceEECCCCCEEEEEecCcCCCc-E
Confidence 8876542 122333 2456766543 5789999999999998888765432 22333 3456777763 333 3
Q ss_pred ecCCccCCCCCeEEEE
Q 040693 365 GFGNKNFTSGTSLYAF 380 (382)
Q Consensus 365 ~~~~~~~~~g~~l~~~ 380 (382)
+.+|..+++.+..+
T Consensus 227 --~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 227 --SMIDTGTNKITARI 240 (391)
T ss_dssp --EEEETTTTEEEEEE
T ss_pred --EEEECCCCeEEEEE
Confidence 33555667766554
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.6e-09 Score=101.56 Aligned_cols=247 Identities=13% Similarity=0.054 Sum_probs=147.6
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
++.++++... ++.|+.+|.++|+.+........ .. ....+ ....+.++ +.+++....
T Consensus 133 ~~~~~~~~~~-------------~~~i~~~d~~~g~~~~~~~~~~~-~~-----~~~~v--~~~~~~~~-~~~~~s~~~- 189 (433)
T 3bws_A 133 NTRLAIPLLE-------------DEGMDVLDINSGQTVRLSPPEKY-KK-----KLGFV--ETISIPEH-NELWVSQMQ- 189 (433)
T ss_dssp SSEEEEEBTT-------------SSSEEEEETTTCCEEEECCCHHH-HT-----TCCEE--EEEEEGGG-TEEEEEEGG-
T ss_pred CCeEEEEeCC-------------CCeEEEEECCCCeEeeecCcccc-cc-----cCCce--eEEEEcCC-CEEEEEECC-
Confidence 6777776542 67899999999999865432110 00 00011 12344444 445554432
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFG 190 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (382)
++.|..+|.++++.+++......
T Consensus 190 -------------------------------d~~v~~~d~~~~~~~~~~~~~~~-------------------------- 212 (433)
T 3bws_A 190 -------------------------------ANAVHVFDLKTLAYKATVDLTGK-------------------------- 212 (433)
T ss_dssp -------------------------------GTEEEEEETTTCCEEEEEECSSS--------------------------
T ss_pred -------------------------------CCEEEEEECCCceEEEEEcCCCC--------------------------
Confidence 38999999999999998874322
Q ss_pred CCceEEEeeeCceeecEE-EEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCcccccccc
Q 040693 191 EAPMMLSMYRNKVKHDIV-VAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNL 267 (382)
Q Consensus 191 ~~p~~~~~~~~g~~~~~v-~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~ 267 (382)
.+.-..+..++ ..+ +.+..++.+..+|..+|+.++.++... ....... ++..+++.......
T Consensus 213 -~~~~~~~~~~~---~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~~~~~~----- 277 (433)
T 3bws_A 213 -WSKILLYDPIR---DLVYCSNWISEDISVIDRKTKLEIRKTDKIG------LPRGLLLSKDGKELYIAQFSASN----- 277 (433)
T ss_dssp -SEEEEEEETTT---TEEEEEETTTTEEEEEETTTTEEEEECCCCS------EEEEEEECTTSSEEEEEEEESCT-----
T ss_pred -CeeEEEEcCCC---CEEEEEecCCCcEEEEECCCCcEEEEecCCC------CceEEEEcCCCCEEEEEECCCCc-----
Confidence 12222233333 345 455578999999999999988876432 1222222 45677776432110
Q ss_pred CCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceec
Q 040693 268 KPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYG 345 (382)
Q Consensus 268 ~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~ 345 (382)
....++.|..+|+++++.+........ ...+.+ +++.+|+... .++.|..+|.++++++...+......
T Consensus 278 ----~~~~dg~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~g~~l~~~~~-~~~~v~v~d~~~~~~~~~~~~~~~~~- 348 (433)
T 3bws_A 278 ----QESGGGRLGIYSMDKEKLIDTIGPPGN---KRHIVSGNTENKIYVSDM-CCSKIEVYDLKEKKVQKSIPVFDKPN- 348 (433)
T ss_dssp ----TCSCCEEEEEEETTTTEEEEEEEEEEC---EEEEEECSSTTEEEEEET-TTTEEEEEETTTTEEEEEEECSSSEE-
T ss_pred ----cccCCCeEEEEECCCCcEEeeccCCCC---cceEEECCCCCEEEEEec-CCCEEEEEECCCCcEEEEecCCCCCC-
Confidence 001357899999999999888754331 112223 2346777643 58999999999999999887654333
Q ss_pred ceEE-e-CCEEEEEeCceeE------------eecCCccCCCCCeEEEEE
Q 040693 346 GASV-S-NGCIYMGNGYKVT------------VGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 346 ~p~~-~-~g~lyv~~~~g~~------------~~~~~~~~~~g~~l~~~~ 381 (382)
...+ . +..||+++..... ..++.+|..+++.+..+.
T Consensus 349 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~ 398 (433)
T 3bws_A 349 TIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE 398 (433)
T ss_dssp EEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred eEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence 3333 2 3467777664221 134556677787776553
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-08 Score=97.64 Aligned_cols=215 Identities=17% Similarity=0.146 Sum_probs=137.1
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++++.+++....... + ....+.+++..+|+....
T Consensus 190 d~~v~~~d~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~~l~~~~~~------------------------ 232 (433)
T 3bws_A 190 ANAVHVFDLKTLAYKATVDLTGKW-----------S--KILLYDPIRDLVYCSNWI------------------------ 232 (433)
T ss_dssp GTEEEEEETTTCCEEEEEECSSSS-----------E--EEEEEETTTTEEEEEETT------------------------
T ss_pred CCEEEEEECCCceEEEEEcCCCCC-----------e--eEEEEcCCCCEEEEEecC------------------------
Confidence 789999999999999987642111 0 235677777788776532
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc-
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ- 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~- 212 (382)
++.|..+|..+|+.++....... |.-..+..+ +..++++.
T Consensus 233 --------~~~i~~~d~~~~~~~~~~~~~~~----------------------------~~~~~~~~~---g~~l~~~~~ 273 (433)
T 3bws_A 233 --------SEDISVIDRKTKLEIRKTDKIGL----------------------------PRGLLLSKD---GKELYIAQF 273 (433)
T ss_dssp --------TTEEEEEETTTTEEEEECCCCSE----------------------------EEEEEECTT---SSEEEEEEE
T ss_pred --------CCcEEEEECCCCcEEEEecCCCC----------------------------ceEEEEcCC---CCEEEEEEC
Confidence 37899999999999887654321 111222222 23555554
Q ss_pred -------cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 213 -------KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 213 -------~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.++.++.+|..+|+.+....... ....... ++..+|++. ..++.|..+|
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~------~~~~~~~~~~g~~l~~~~----------------~~~~~v~v~d 331 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKLIDTIGPPG------NKRHIVSGNTENKIYVSD----------------MCCSKIEVYD 331 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEEEEEEEEEE------CEEEEEECSSTTEEEEEE----------------TTTTEEEEEE
T ss_pred CCCccccCCCeEEEEECCCCcEEeeccCCC------CcceEEECCCCCEEEEEe----------------cCCCEEEEEE
Confidence 47899999999999888764321 1112222 455677653 2357899999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecC-------------CCcEEEEeCCCCcEeEEEecCCceecceE
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYR-------------QGPIYAMDVKTGKILWSYDTGATIYGGAS 348 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-------------~g~l~~ld~~tG~ilw~~~~~~~~~~~p~ 348 (382)
+++++.++....... ...+.+. +..+|++.... +|.|+.+|.++++++..++.... .....
T Consensus 332 ~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~-~~~~~ 407 (433)
T 3bws_A 332 LKEKKVQKSIPVFDK---PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQ-PTGLD 407 (433)
T ss_dssp TTTTEEEEEEECSSS---EEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSS-EEEEE
T ss_pred CCCCcEEEEecCCCC---CCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCC-CceEE
Confidence 999999988875431 2233333 45777776311 36999999999999998876432 23333
Q ss_pred E--eCCEEEEEeCceeEeecCCcc
Q 040693 349 V--SNGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 349 ~--~~g~lyv~~~~g~~~~~~~~~ 370 (382)
+ .+..|++++.....+.+|.++
T Consensus 408 ~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 408 VSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp ECTTSCEEEEEETTTTEEEEEEET
T ss_pred EcCCCCEEEEEECCCCeEEEEEec
Confidence 3 345666666533334555543
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.11 E-value=2.9e-08 Score=95.36 Aligned_cols=280 Identities=11% Similarity=0.031 Sum_probs=163.6
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
||.+|++++.+.+.+..+ . +..+| .+..+|++.....-+.. -...+.|..||.+|++++-+..+......
T Consensus 64 iD~~t~~v~~~I~vG~~P-~-va~sp--DG~~lyVan~~~~r~~~----G~~~~~VsviD~~t~~v~~~I~v~~g~r~-- 133 (386)
T 3sjl_D 64 IDGEAGRVIGMIDGGFLP-N-PVVAD--DGSFIAHASTVFSRIAR----GERTDYVEVFDPVTLLPTADIELPDAPRF-- 133 (386)
T ss_dssp EETTTTEEEEEEEECSSC-E-EEECT--TSSCEEEEEEEEEETTE----EEEEEEEEEECTTTCCEEEEEEETTCCCC--
T ss_pred EECCCCeEEEEEECCCCC-c-EEECC--CCCEEEEEccccccccc----CCCCCEEEEEECCCCeEEEEEECCCcccc--
Confidence 789999999999876443 2 33333 34568887631000000 00046799999999999999887431100
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
..|...+ ...+++++.++|+.... ..+.|..||.+|++++-+.+.
T Consensus 134 --~~g~~P~--~~a~spDGk~lyVan~~-------------------------------~~~~VsVID~~t~~vv~tI~v 178 (386)
T 3sjl_D 134 --LVGTYPW--MTSLTPDGKTLLFYQFS-------------------------------PAPAVGVVDLEGKAFKRMLDV 178 (386)
T ss_dssp --CBSCCGG--GEEECTTSSEEEEEECS-------------------------------SSCEEEEEETTTTEEEEEEEC
T ss_pred --ccCCCCc--eEEEcCCCCEEEEEEcC-------------------------------CCCeEEEEECCCCcEEEEEEC
Confidence 0111111 36788898999997532 137899999999999998876
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCC-CCeeeeeccCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDS-GSLIWSMEAGPGGLGG 240 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~g 240 (382)
+... .+. +.| ...++....||.+..++..+ |++.=... ......
T Consensus 179 ~g~~----------------------------~~~---P~g--~~~~~~~~~DG~~~~v~~~~~g~v~~~~~--~~~~~~ 223 (386)
T 3sjl_D 179 PDCY----------------------------HIF---PTA--PDTFFMHCRDGSLAKVAFGTEGTPEITHT--EVFHPE 223 (386)
T ss_dssp CSEE----------------------------EEE---EEE--TTEEEEEETTSCEEEEECCSSSCCEEEEC--CCCSCT
T ss_pred CCcc----------------------------eee---cCC--CceeEEECCCCCEEEEECCCCCeEEEeec--ceeccc
Confidence 5320 011 011 33455666788888888876 77632111 100000
Q ss_pred -Cccc-ceee--eCCe-EEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE----eee-cC----CC-CCCCCcce
Q 040693 241 -GAMW-GAAT--DERR-IYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL----WST-AD----PS-NGTAPGPV 305 (382)
Q Consensus 241 -~~~~-~~~~--~~~~-v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~----W~~-~~----~~-~~~~~~~~ 305 (382)
...+ .+.. .++. +|++ ..++|+.+|..+++.. |.. .. +. .+....++
T Consensus 224 ~~~~~~~~~~~~~dG~~~~vs------------------~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~ 285 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVWPT------------------YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQV 285 (386)
T ss_dssp TSCBCSCCEEETTTTEEEEEB------------------TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCE
T ss_pred cccccccceeEcCCCcEEEEe------------------CCCEEEEEECCCCcceeecceeccccccccccccCCCccee
Confidence 1111 1222 2444 5553 4588999999887532 321 00 00 00012234
Q ss_pred EE--eCCEEEEeeec--------CCCcEEEEeCCCCcEeEEEecCCceecceEEeCC--EEEEEeCceeEeecCCccCCC
Q 040693 306 TV--ANGVLFGGSTY--------RQGPIYAMDVKTGKILWSYDTGATIYGGASVSNG--CIYMGNGYKVTVGFGNKNFTS 373 (382)
Q Consensus 306 ~~--~~~~v~~~~~~--------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g--~lyv~~~~g~~~~~~~~~~~~ 373 (382)
.+ +++++|+.... ....|++||.+|+|++-+++++...++-.+-.++ +||+++..... +.-+|..+
T Consensus 286 a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~--VsViD~~t 363 (386)
T 3sjl_D 286 AYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKT--LYIHDAES 363 (386)
T ss_dssp EEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTE--EEEEETTT
T ss_pred eECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCe--EEEEECCC
Confidence 44 35799998631 1257999999999999999987654433333454 58888763332 34578889
Q ss_pred CCeEEEEE
Q 040693 374 GTSLYAFC 381 (382)
Q Consensus 374 g~~l~~~~ 381 (382)
++.+-+..
T Consensus 364 ~k~~~~i~ 371 (386)
T 3sjl_D 364 GEELRSVN 371 (386)
T ss_dssp CCEEEEEC
T ss_pred CcEEEEec
Confidence 99886653
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-08 Score=94.77 Aligned_cols=229 Identities=16% Similarity=0.200 Sum_probs=156.3
Q ss_pred EEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcC
Q 040693 29 YYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATG 108 (382)
Q Consensus 29 v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~ 108 (382)
..++.++.+.. ++.|..+|..+|+.+.++.... ..++ ...++ ++.++.+..
T Consensus 127 ~~g~~l~sg~~--------------dg~i~vwd~~~~~~~~~~~~h~-----------~~v~--~~~~~--~~~l~s~~~ 177 (445)
T 2ovr_B 127 FCGNRIVSGSD--------------DNTLKVWSAVTGKCLRTLVGHT-----------GGVW--SSQMR--DNIIISGST 177 (445)
T ss_dssp EETTEEEEEET--------------TSCEEEEETTTCCEEEECCCCS-----------SCEE--EEEEE--TTEEEEEET
T ss_pred EcCCEEEEEEC--------------CCcEEEEECCCCcEEEEEcCCC-----------CCEE--EEEec--CCEEEEEeC
Confidence 34666666664 8999999999999988765311 1111 22333 346666554
Q ss_pred CCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCC
Q 040693 109 NLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDAD 188 (382)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (382)
+ +.|..+|..+|+.+.++......
T Consensus 178 d---------------------------------g~i~vwd~~~~~~~~~~~~h~~~----------------------- 201 (445)
T 2ovr_B 178 D---------------------------------RTLKVWNAETGECIHTLYGHTST----------------------- 201 (445)
T ss_dssp T---------------------------------SCEEEEETTTTEEEEEECCCSSC-----------------------
T ss_pred C---------------------------------CeEEEEECCcCcEEEEECCCCCc-----------------------
Confidence 3 89999999999998877643221
Q ss_pred CCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccC
Q 040693 189 FGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLK 268 (382)
Q Consensus 189 ~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 268 (382)
+..+.. .+..+++++.++.+..+|..+++.++...... ........++..++++
T Consensus 202 ------v~~~~~---~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~~~------------ 255 (445)
T 2ovr_B 202 ------VRCMHL---HEKRVVSGSRDATLRVWDIETGQCLHVLMGHV-----AAVRCVQYDGRRVVSG------------ 255 (445)
T ss_dssp ------EEEEEE---ETTEEEEEETTSEEEEEESSSCCEEEEEECCS-----SCEEEEEECSSCEEEE------------
T ss_pred ------EEEEEe---cCCEEEEEeCCCEEEEEECCCCcEEEEEcCCc-----ccEEEEEECCCEEEEE------------
Confidence 111111 14678899999999999999999998876432 1223333366666666
Q ss_pred CCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceE
Q 040693 269 PSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS 348 (382)
Q Consensus 269 ~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~ 348 (382)
..++.|..+|+++++.+.+...... ....+..++..++.++. ++.|..+|..+++.+..+...........
T Consensus 256 -----~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~v~~~~ 326 (445)
T 2ovr_B 256 -----AYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSL--DTSIRVWDVETGNCIHTLTGHQSLTSGME 326 (445)
T ss_dssp -----ETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEECSSEEEEEET--TSCEEEEETTTCCEEEEECCCCSCEEEEE
T ss_pred -----cCCCEEEEEECCCCcEeEEecCCCC--ceEEEEECCCEEEEEeC--CCeEEEEECCCCCEEEEEcCCcccEEEEE
Confidence 3458899999999999988875432 22334456677777774 99999999999999998875554444555
Q ss_pred EeCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 349 VSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 349 ~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
..++.|++++.+|. +.+| |..+|+.+..+
T Consensus 327 ~~~~~l~~~~~dg~-i~vw--d~~~~~~~~~~ 355 (445)
T 2ovr_B 327 LKDNILVSGNADST-VKIW--DIKTGQCLQTL 355 (445)
T ss_dssp EETTEEEEEETTSC-EEEE--ETTTCCEEEEE
T ss_pred EeCCEEEEEeCCCe-EEEE--ECCCCcEEEEE
Confidence 67777777777765 3444 45567777665
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.5e-08 Score=91.17 Aligned_cols=231 Identities=13% Similarity=0.124 Sum_probs=135.3
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|.++|+++++......... ..+.+.+++..+|+....
T Consensus 20 ~~~v~~~d~~~~~~~~~~~~~~~~~~------------~~~~~s~dg~~~~v~~~~------------------------ 63 (349)
T 1jmx_B 20 PNNLHVVDVASDTVYKSCVMPDKFGP------------GTAMMAPDNRTAYVLNNH------------------------ 63 (349)
T ss_dssp TTEEEEEETTTTEEEEEEECSSCCSS------------CEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEECCCCcEEEEEecCCCCCC------------ceeEECCCCCEEEEEeCC------------------------
Confidence 78999999999999999876421000 135677777778876532
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
++.|+.+|+++|+.+++........- ....|.-..+.++ +..++++..
T Consensus 64 --------~~~i~~~d~~t~~~~~~~~~~~~~~~---------------------~~~~~~~~~~spd---g~~l~~~~~ 111 (349)
T 1jmx_B 64 --------YGDIYGIDLDTCKNTFHANLSSVPGE---------------------VGRSMYSFAISPD---GKEVYATVN 111 (349)
T ss_dssp --------TTEEEEEETTTTEEEEEEESCCSTTE---------------------EEECSSCEEECTT---SSEEEEEEE
T ss_pred --------CCcEEEEeCCCCcEEEEEEccccccc---------------------ccccccceEECCC---CCEEEEEcc
Confidence 37899999999999998876431000 0001111112222 245555554
Q ss_pred C------------cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 214 S------------GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 214 ~------------g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
+ +.++.+|.++|+.......... .. ....... .++.+|+.. +.|.
T Consensus 112 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~-~~~~~~~s~dg~l~~~~-------------------~~i~ 169 (349)
T 1jmx_B 112 PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM--PR-QVYLMRAADDGSLYVAG-------------------PDIY 169 (349)
T ss_dssp EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC--CS-SCCCEEECTTSCEEEES-------------------SSEE
T ss_pred cccccccccccCCCeEEEEECCCccccceeeeccC--CC-cccceeECCCCcEEEcc-------------------CcEE
Confidence 3 7899999998665432221100 00 1111112 233377641 3388
Q ss_pred EEECCCCcEEeeecCCCCCCC---------------C-------------------------------------------
Q 040693 281 AMDASNGNVLWSTADPSNGTA---------------P------------------------------------------- 302 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~---------------~------------------------------------------- 302 (382)
.+|+++|+.+.+.+....... .
T Consensus 170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (349)
T 1jmx_B 170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE 249 (349)
T ss_dssp EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence 888888888877654320000 0
Q ss_pred ------cc--eE--E-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCCc
Q 040693 303 ------GP--VT--V-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGNK 369 (382)
Q Consensus 303 ------~~--~~--~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~ 369 (382)
.+ +. - ++..+|++ ++.|+.+|+++++++.+.+.+.... ...+ .+++||++..++. +.-+
T Consensus 250 ~~~~~~~~~~~~~sp~dg~~l~~~----~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~---v~v~ 321 (349)
T 1jmx_B 250 FADLTELYFTGLRSPKDPNQIYGV----LNRLAKYDLKQRKLIKAANLDHTYY-CVAFDKKGDKLYLGGTFND---LAVF 321 (349)
T ss_dssp EEECSSCEEEEEECSSCTTEEEEE----ESEEEEEETTTTEEEEEEECSSCCC-EEEECSSSSCEEEESBSSE---EEEE
T ss_pred cccCCCcceeeEecCCCCCEEEEE----cCeEEEEECccCeEEEEEcCCCCcc-ceEECCCCCEEEEecCCCe---EEEE
Confidence 00 00 1 34466665 4789999999999998887665332 3333 3467888655543 3446
Q ss_pred cCCCCCeEEEEEC
Q 040693 370 NFTSGTSLYAFCV 382 (382)
Q Consensus 370 ~~~~g~~l~~~~~ 382 (382)
|..+++.+..+.+
T Consensus 322 d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 322 NPDTLEKVKNIKL 334 (349)
T ss_dssp ETTTTEEEEEEEC
T ss_pred eccccceeeeeec
Confidence 7778888877653
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.3e-08 Score=89.52 Aligned_cols=162 Identities=15% Similarity=0.227 Sum_probs=115.7
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc-cCcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ-KSGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~-~~g~l~ald 221 (382)
+.|..+|++|||++-+. +.+.. + -..+... ++.||+.+ .++.++.+|
T Consensus 75 g~v~~iD~~Tgkv~~~~-l~~~~-F---------------------------geGit~~---g~~Ly~ltw~~~~v~V~D 122 (268)
T 3nok_A 75 GTLRQLSLESAQPVWME-RLGNI-F---------------------------AEGLASD---GERLYQLTWTEGLLFTWS 122 (268)
T ss_dssp TEEEECCSSCSSCSEEE-ECTTC-C---------------------------EEEEEEC---SSCEEEEESSSCEEEEEE
T ss_pred CEEEEEECCCCcEEeEE-CCCCc-c---------------------------eeEEEEe---CCEEEEEEccCCEEEEEE
Confidence 67999999999999998 55431 0 0111111 34566554 467999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
++|++++-+++.+. .-|+...+++.+|++ +.++.|+.+|++|.+++=++........
T Consensus 123 ~~Tl~~~~ti~~~~------eGwGLt~Dg~~L~vS-----------------dGs~~l~~iDp~T~~v~~~I~V~~~g~~ 179 (268)
T 3nok_A 123 GMPPQRERTTRYSG------EGWGLCYWNGKLVRS-----------------DGGTMLTFHEPDGFALVGAVQVKLRGQP 179 (268)
T ss_dssp TTTTEEEEEEECSS------CCCCEEEETTEEEEE-----------------CSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred CCcCcEEEEEeCCC------ceeEEecCCCEEEEE-----------------CCCCEEEEEcCCCCeEEEEEEeCCCCcc
Confidence 99999999998643 336766789999998 4468899999999999988876442111
Q ss_pred C---cceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-------------ceecceEEe--CCEEEEEeCc
Q 040693 302 P---GPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-------------TIYGGASVS--NGCIYMGNGY 360 (382)
Q Consensus 302 ~---~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-------------~~~~~p~~~--~g~lyv~~~~ 360 (382)
. .-+...++.+|+... ....|..||++||+++-+.++++ ......++. .++|||+.-.
T Consensus 180 v~~lNeLe~~dG~lyanvw-~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 180 VELINELECANGVIYANIW-HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp CCCEEEEEEETTEEEEEET-TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred cccccccEEeCCEEEEEEC-CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 1 123345889998874 67899999999999999998752 133444553 5788887544
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-08 Score=89.23 Aligned_cols=164 Identities=15% Similarity=0.229 Sum_probs=118.2
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc-CcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK-SGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~-~g~l~ald 221 (382)
+.|..+|++||+++-+..+.+.. +...-.+. ++.||+.+. ++.++.+|
T Consensus 65 S~v~~vD~~Tgkv~~~~~l~~~~-----------------------FgeGit~~--------g~~ly~ltw~~~~v~v~D 113 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQIELGKRY-----------------------FGEGISDW--------KDKIVGLTWKNGLGFVWN 113 (262)
T ss_dssp EEEEEECTTTCCEEEEEECCTTC-----------------------CEEEEEEE--------TTEEEEEESSSSEEEEEE
T ss_pred ceEEEEECCCCcEEEEEecCCcc-----------------------ceeEEEEe--------CCEEEEEEeeCCEEEEEE
Confidence 58999999999999998776431 00111111 467777654 67999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCC--C
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN--G 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~--~ 299 (382)
++|++++-+++.+. .-|+...+++.+|++ +.++.|+.+|++|.+++=++..... .
T Consensus 114 ~~t~~~~~ti~~~~------eG~glt~dg~~L~~S-----------------dGs~~i~~iDp~T~~v~~~I~V~~~g~~ 170 (262)
T 3nol_A 114 IRNLRQVRSFNYDG------EGWGLTHNDQYLIMS-----------------DGTPVLRFLDPESLTPVRTITVTAHGEE 170 (262)
T ss_dssp TTTCCEEEEEECSS------CCCCEEECSSCEEEC-----------------CSSSEEEEECTTTCSEEEEEECEETTEE
T ss_pred CccCcEEEEEECCC------CceEEecCCCEEEEE-----------------CCCCeEEEEcCCCCeEEEEEEeccCCcc
Confidence 99999999998753 336666688899997 3457899999999999988887431 1
Q ss_pred CCC-cceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc------------eecceEEe--CCEEEEEeCce
Q 040693 300 TAP-GPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT------------IYGGASVS--NGCIYMGNGYK 361 (382)
Q Consensus 300 ~~~-~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~------------~~~~p~~~--~g~lyv~~~~g 361 (382)
... .-+...++.+|+... ....|+.||++||+++-+.++++- .....++. .++|||+.-..
T Consensus 171 ~~~lNELe~~~G~lyan~w-~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W 246 (262)
T 3nol_A 171 LPELNELEWVDGEIFANVW-QTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW 246 (262)
T ss_dssp CCCEEEEEEETTEEEEEET-TSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred ccccceeEEECCEEEEEEc-cCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence 111 114456889998874 678999999999999999988631 22444553 58888886554
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.4e-07 Score=87.31 Aligned_cols=227 Identities=15% Similarity=0.120 Sum_probs=134.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++|+++++........ . ...+.+++++..+|+....
T Consensus 10 ~~~v~~~d~~~~~~~~~~~~~~~~~---------~--~~~~~~s~dg~~l~v~~~~------------------------ 54 (337)
T 1pby_B 10 PDKLVVIDTEKMAVDKVITIADAGP---------T--PMVPMVAPGGRIAYATVNK------------------------ 54 (337)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCTT---------C--CCCEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEECCCCcEEEEEEcCCCCC---------C--ccceEEcCCCCEEEEEeCC------------------------
Confidence 8899999999999999987642100 0 0246788887788887643
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc-
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ- 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~- 212 (382)
++.|+.+|+.+|+.+++......... ...|.-..+..+ +..+++..
T Consensus 55 --------~~~v~~~d~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~s~d---g~~l~~~~~ 101 (337)
T 1pby_B 55 --------SESLVKIDLVTGETLGRIDLSTPEER----------------------VKSLFGAALSPD---GKTLAIYES 101 (337)
T ss_dssp --------TTEEEEEETTTCCEEEEEECCBTTEE----------------------EECTTCEEECTT---SSEEEEEEE
T ss_pred --------CCeEEEEECCCCCeEeeEEcCCcccc----------------------cccccceEECCC---CCEEEEEec
Confidence 37899999999999998876531000 001111112222 23555553
Q ss_pred -----------cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 213 -----------KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 213 -----------~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
.++.++.+|.++++.++.+..+.. .....+ ++..+|+. ++.|
T Consensus 102 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~------~~~~~~s~dg~~l~~~-------------------~~~i 156 (337)
T 1pby_B 102 PVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ------ITMLAWARDGSKLYGL-------------------GRDL 156 (337)
T ss_dssp EEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS------CCCEEECTTSSCEEEE-------------------SSSE
T ss_pred ccccccccccccCceEEEEECCCCcEEEEEeCCCC------cceeEECCCCCEEEEe-------------------CCeE
Confidence 468899999999999988875321 112222 56667775 2569
Q ss_pred EEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeec------------CCC----------cEEEEeCCCCcEeEEE
Q 040693 280 VAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTY------------RQG----------PIYAMDVKTGKILWSY 337 (382)
Q Consensus 280 ~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~------------~~g----------~l~~ld~~tG~ilw~~ 337 (382)
+.+|+++|+............ .....-++..+|+.... ..+ .|+.+|++++++. ..
T Consensus 157 ~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~ 234 (337)
T 1pby_B 157 HVMDPEAGTLVEDKPIQSWEA-ETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MR 234 (337)
T ss_dssp EEEETTTTEEEEEECSTTTTT-TTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EE
T ss_pred EEEECCCCcEeeeeeccccCC-CceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-Ee
Confidence 999999999988876543111 11111123333333210 011 5789999999986 44
Q ss_pred ecCC--ceecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 338 DTGA--TIYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 338 ~~~~--~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.... .......+ .+..||++ ++. ++.+|..+++.+..+
T Consensus 235 ~~~~~~~~~~~~~~s~dg~~l~~~--~~~---v~~~d~~~~~~~~~~ 276 (337)
T 1pby_B 235 EVRIMDVFYFSTAVNPAKTRAFGA--YNV---LESFDLEKNASIKRV 276 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEE--ESE---EEEEETTTTEEEEEE
T ss_pred ecCCCCCceeeEEECCCCCEEEEe--CCe---EEEEECCCCcCccee
Confidence 3321 11112222 34466666 322 344666677776654
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.04 E-value=9.9e-08 Score=88.57 Aligned_cols=256 Identities=10% Similarity=0.129 Sum_probs=141.1
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEE--cCEEEEeccCccccccccccccccceEEEEeCccCce-eeeeeccCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYY--KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRI-LWQTFMLPDNF 78 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~-lW~~~~~~~~~ 78 (382)
+|+++|+++.....+.... ...+. +..+|++... ++.|+.+|+++|++ +.........
T Consensus 25 ~d~~~~~~~~~~~~~~~~~-----~~~~s~dg~~l~~~~~~-------------~~~i~~~d~~~~~~~~~~~~~~~~~- 85 (331)
T 3u4y_A 25 FSTDTLEILNQITLGYDFV-----DTAITSDCSNVVVTSDF-------------CQTLVQIETQLEPPKVVAIQEGQSS- 85 (331)
T ss_dssp EETTTCCEEEEEECCCCEE-----EEEECSSSCEEEEEEST-------------TCEEEEEECSSSSCEEEEEEECSSC-
T ss_pred EeCcccceeeeEEccCCcc-----eEEEcCCCCEEEEEeCC-------------CCeEEEEECCCCceeEEecccCCCC-
Confidence 5778888877766532111 22222 3357776642 67899999999998 5555442111
Q ss_pred CCCCCCcCccccCCC-ceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEE
Q 040693 79 GKLNEYAGAAIWGSS-PSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVW 157 (382)
Q Consensus 79 ~~~~~~~g~~~~~~~-~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W 157 (382)
.. ..+++++..+|+.... ...+.|..+|.++|+.+.
T Consensus 86 -------------~~~~~~s~dg~~l~~~~~~------------------------------~~~~~i~v~d~~~~~~~~ 122 (331)
T 3u4y_A 86 -------------MADVDITPDDQFAVTVTGL------------------------------NHPFNMQSYSFLKNKFIS 122 (331)
T ss_dssp -------------CCCEEECTTSSEEEECCCS------------------------------SSSCEEEEEETTTTEEEE
T ss_pred -------------ccceEECCCCCEEEEecCC------------------------------CCcccEEEEECCCCCeEE
Confidence 13 5778887888843321 001289999999999887
Q ss_pred EEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcE-EEEEeCCCCCeeeeeccCCC
Q 040693 158 YKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGF-AWALDRDSGSLIWSMEAGPG 236 (382)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~-l~ald~~tG~~~W~~~~~~~ 236 (382)
...... .|.-..+.++| +.+++....++. +..++......+.... ...
T Consensus 123 ~~~~~~----------------------------~~~~~~~spdg--~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~~ 171 (331)
T 3u4y_A 123 TIPIPY----------------------------DAVGIAISPNG--NGLILIDRSSANTVRRFKIDADGVLFDTG-QEF 171 (331)
T ss_dssp EEECCT----------------------------TEEEEEECTTS--SCEEEEEETTTTEEEEEEECTTCCEEEEE-EEE
T ss_pred EEECCC----------------------------CccceEECCCC--CEEEEEecCCCceEEEEEECCCCcEeecC-Ccc
Confidence 765432 12222223333 223333344455 6655555433322211 000
Q ss_pred CCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE---EeeecCCCCCCCCcceEE--eC
Q 040693 237 GLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV---LWSTADPSNGTAPGPVTV--AN 309 (382)
Q Consensus 237 ~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~---~W~~~~~~~~~~~~~~~~--~~ 309 (382)
...+.......+ ++..+|+... ..+.|..+|+++|+. +-+.+.... ...+.+ ++
T Consensus 172 ~~~~~~~~~~~~spdg~~l~v~~~----------------~~~~v~v~d~~~~~~~~~~~~~~~~~~---~~~~~~spdg 232 (331)
T 3u4y_A 172 ISGGTRPFNITFTPDGNFAFVANL----------------IGNSIGILETQNPENITLLNAVGTNNL---PGTIVVSRDG 232 (331)
T ss_dssp ECSSSSEEEEEECTTSSEEEEEET----------------TTTEEEEEECSSTTSCEEEEEEECSSC---CCCEEECTTS
T ss_pred ccCCCCccceEECCCCCEEEEEeC----------------CCCeEEEEECCCCcccceeeeccCCCC---CceEEECCCC
Confidence 001111122222 4556777632 357899999999998 766665431 223334 34
Q ss_pred CEEEEeeecCCCcEEEEeCCCCcE--eEEEecC----Cc-eec--ceEE--eCCEEEEEeCceeEeecCCcc
Q 040693 310 GVLFGGSTYRQGPIYAMDVKTGKI--LWSYDTG----AT-IYG--GASV--SNGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 310 ~~v~~~~~~~~g~l~~ld~~tG~i--lw~~~~~----~~-~~~--~p~~--~~g~lyv~~~~g~~~~~~~~~ 370 (382)
..+|++.. .++.|+.+|.++|++ +..+... .. ... ...+ .+..||+++.++..+.+|.++
T Consensus 233 ~~l~v~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 233 STVYVLTE-STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTIS 303 (331)
T ss_dssp SEEEEECS-SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CEEEEEEc-CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEec
Confidence 56777763 357799999999998 4333322 11 111 1222 455788888776555565554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=2e-07 Score=94.01 Aligned_cols=254 Identities=11% Similarity=0.030 Sum_probs=154.8
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeC--ccCceeeeeeccCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDA--KTGRILWQTFMLPDNFG 79 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~--~tG~~lW~~~~~~~~~~ 79 (382)
+|.++|+++.+...+.. ...+..+| .+..+|++.. ++.|..+|. +|++++-+...+..
T Consensus 164 ~D~~t~~~~~~i~~g~~-~~~v~~sp--dg~~l~v~~~--------------d~~V~v~D~~~~t~~~~~~i~~g~~--- 223 (543)
T 1nir_A 164 VDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGR--------------DARIDMIDLWAKEPTKVAEIKIGIE--- 223 (543)
T ss_dssp EETTTCCEEEEEECSTT-EEEEEECT--TSCEEEEEET--------------TSEEEEEETTSSSCEEEEEEECCSE---
T ss_pred EECCCceEEEEEecCcc-cceEEECC--CCCEEEEECC--------------CCeEEEEECcCCCCcEEEEEecCCC---
Confidence 57888888877765321 11122222 3457888775 789999999 89999887765211
Q ss_pred CCCCCcCccccCCCceeeC----CCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcE
Q 040693 80 KLNEYAGAAIWGSSPSIDP----IRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKI 155 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~----~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~ 155 (382)
. ....+++ ++.++|++... ++.|..+|..|+++
T Consensus 224 ---------p--~~va~sp~~~~dg~~l~v~~~~--------------------------------~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 224 ---------A--RSVESSKFKGYEDRYTIAGAYW--------------------------------PPQFAIMDGETLEP 260 (543)
T ss_dssp ---------E--EEEEECCSTTCTTTEEEEEEEE--------------------------------SSEEEEEETTTCCE
T ss_pred ---------c--ceEEeCCCcCCCCCEEEEEEcc--------------------------------CCeEEEEecccccc
Confidence 1 1356777 78889987642 37899999999999
Q ss_pred EEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEe--eeCceeecEEEEEccCcEEEEEeCCCCCeeeeecc
Q 040693 156 VWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSM--YRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEA 233 (382)
Q Consensus 156 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~ 233 (382)
+...+........ ..+...|.+..+ ..++ ...++....++.+..+|..+++.+.....
T Consensus 261 ~~~i~~~g~~~~~------------------~~~~~~~~v~~i~~s~~~--~~~~vs~~~~g~i~vvd~~~~~~l~~~~i 320 (543)
T 1nir_A 261 KQIVSTRGMTVDT------------------QTYHPEPRVAAIIASHEH--PEFIVNVKETGKVLLVNYKDIDNLTVTSI 320 (543)
T ss_dssp EEEEECCEECSSS------------------CCEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEECTTSSSCEEEEE
T ss_pred ceeecccCcccCc------------------cccccCCceEEEEECCCC--CEEEEEECCCCeEEEEEecCCCcceeEEe
Confidence 9988764321000 000012223322 2223 34566667789999999999876652222
Q ss_pred CCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC-CcceEE-e-
Q 040693 234 GPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA-PGPVTV-A- 308 (382)
Q Consensus 234 ~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~~~~~~-~- 308 (382)
+. +......++ ++..+|++.. .+++|..+|.++|+++.+.+....+.. .+...+ .
T Consensus 321 ~~----~~~~~~~~~spdg~~l~va~~----------------~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~~~p~ 380 (543)
T 1nir_A 321 GA----APFLHDGGWDSSHRYFMTAAN----------------NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPK 380 (543)
T ss_dssp EC----CSSCCCEEECTTSCEEEEEEG----------------GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEEEETT
T ss_pred cc----CcCccCceECCCCCEEEEEec----------------CCCeEEEEECCCCeEEEeeccCCCCCCCCCcccCCCC
Confidence 11 111122222 5666776532 347899999999999988876432111 122222 2
Q ss_pred CCEEEEeeecCCCcEEEEeCCC-------CcEeEEEecCCceecceE--EeCCEEEEEe
Q 040693 309 NGVLFGGSTYRQGPIYAMDVKT-------GKILWSYDTGATIYGGAS--VSNGCIYMGN 358 (382)
Q Consensus 309 ~~~v~~~~~~~~g~l~~ld~~t-------G~ilw~~~~~~~~~~~p~--~~~g~lyv~~ 358 (382)
++.+|+.....++.|..+|.++ ++++-+++..+....... ..+..||+.+
T Consensus 381 ~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~ 439 (543)
T 1nir_A 381 YGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDT 439 (543)
T ss_dssp TEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECC
T ss_pred CccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEec
Confidence 3678876532368899999988 888888876542211111 1456778775
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-07 Score=91.52 Aligned_cols=249 Identities=10% Similarity=0.010 Sum_probs=150.4
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|.++++.++......... . .....++.++++.. +|.|..+|.++|+.+.+......
T Consensus 158 wd~~~~~~~~~~~~h~~~v--~--~l~~~~~~l~sg~~--------------dg~i~vwd~~~~~~~~~~~~h~~----- 214 (435)
T 1p22_A 158 WDKNTLECKRILTGHTGSV--L--CLQYDERVIITGSS--------------DSTVRVWDVNTGEMLNTLIHHCE----- 214 (435)
T ss_dssp EESSSCCEEEEECCCSSCE--E--EEECCSSEEEEEET--------------TSCEEEEESSSCCEEEEECCCCS-----
T ss_pred EeCCCCeEEEEEcCCCCcE--E--EEEECCCEEEEEcC--------------CCeEEEEECCCCcEEEEEcCCCC-----
Confidence 3556677666655332211 1 11124455666654 89999999999998877653111
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
. ...+.-..+.++.+..+ +.|..+|..+++.......
T Consensus 215 ------~----v~~l~~~~~~l~s~s~d---------------------------------g~i~vwd~~~~~~~~~~~~ 251 (435)
T 1p22_A 215 ------A----VLHLRFNNGMMVTCSKD---------------------------------RSIAVWDMASPTDITLRRV 251 (435)
T ss_dssp ------C----EEEEECCTTEEEEEETT---------------------------------SCEEEEECSSSSCCEEEEE
T ss_pred ------c----EEEEEEcCCEEEEeeCC---------------------------------CcEEEEeCCCCCCceeeeE
Confidence 0 11222234566665543 8899999998887643322
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGG 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~ 241 (382)
.... ..+ +..+.. .+..+++++.++.+..+|..+++.+..+.... .
T Consensus 252 ~~~~-------------------------~~~-v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-----~ 297 (435)
T 1p22_A 252 LVGH-------------------------RAA-VNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHK-----R 297 (435)
T ss_dssp ECCC-------------------------SSC-EEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCS-----S
T ss_pred ecCC-------------------------CCc-EEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCC-----C
Confidence 2110 111 111211 25788899999999999999999998877432 1
Q ss_pred cccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCC
Q 040693 242 AMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQG 321 (382)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g 321 (382)
.......++..++++ ..++.|..+|.++|+.+.+...... ....+..++.+++.++. +|
T Consensus 298 ~v~~~~~~~~~l~~g-----------------~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~l~sg~~--dg 356 (435)
T 1p22_A 298 GIACLQYRDRLVVSG-----------------SSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFDNKRIVSGAY--DG 356 (435)
T ss_dssp CEEEEEEETTEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSS--CEEEEECCSSEEEEEET--TS
T ss_pred cEEEEEeCCCEEEEE-----------------eCCCeEEEEECCCCCEEEEEeCCcC--cEEEEEecCCEEEEEeC--CC
Confidence 223333466777776 3458899999999999988875432 22334446677777774 99
Q ss_pred cEEEEeCCCCc---------EeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCC
Q 040693 322 PIYAMDVKTGK---------ILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFT 372 (382)
Q Consensus 322 ~l~~ld~~tG~---------ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~ 372 (382)
.|..+|..+++ .+..+.............+..|+.++.+ ..+.+|.++..
T Consensus 357 ~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~D-g~i~iwd~~~~ 415 (435)
T 1p22_A 357 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHD-DTILIWDFLND 415 (435)
T ss_dssp CEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSS-SEEEEEC----
T ss_pred cEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCC-CEEEEEECCCC
Confidence 99999988766 6666654444444445544444444445 44677777653
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-07 Score=92.62 Aligned_cols=279 Identities=9% Similarity=0.010 Sum_probs=163.8
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeecc-CCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFML-PDNFGK 80 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~-~~~~~~ 80 (382)
||++|++++.+.+++..+ .+..+| .+..+||+......... -...+.|..||.+|++++-+..+. +...
T Consensus 104 ID~~t~~vv~~I~vG~~P--gia~Sp--Dgk~lyVan~~~~~~~~----G~~~~~VsviD~~t~~vv~~I~v~g~~r~-- 173 (426)
T 3c75_H 104 IDGSTGRILGMTDGGFLP--HPVAAE--DGSFFAQASTVFERIAR----GKRTDYVEVFDPVTFLPIADIELPDAPRF-- 173 (426)
T ss_dssp EETTTTEEEEEEEECSSC--EEEECT--TSSCEEEEEEEEEETTE----EEEEEEEEEECTTTCCEEEEEEETTCCCC--
T ss_pred EECCCCEEEEEEECCCCC--ceEECC--CCCEEEEEecccccccc----CCCCCEEEEEECCCCcEEEEEECCCcccc--
Confidence 789999999999986543 232233 35678887631000000 000568999999999999988874 1110
Q ss_pred CCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEe
Q 040693 81 LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQ 160 (382)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~ 160 (382)
..+... ....+++++.++|+.... ..+.|..||.++++++-+++
T Consensus 174 ---~~g~~P--~~~~~spDGk~lyV~n~~-------------------------------~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 174 ---LVGTYQ--WMNALTPDNKNLLFYQFS-------------------------------PAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ---CBSCCG--GGSEECTTSSEEEEEECS-------------------------------SSCEEEEEETTTTEEEEEEE
T ss_pred ---ccCCCc--ceEEEcCCCCEEEEEecC-------------------------------CCCeEEEEECCCCeEEEEEE
Confidence 001111 135788899999997532 12789999999999999887
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCC
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGG 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g 240 (382)
.+.. ..+. .+| ...++....+|.+..+|..++++.+... .......
T Consensus 218 v~g~----------------------------~~~~---p~g--~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~ 263 (426)
T 3c75_H 218 VPDC----------------------------YHIF---PAS--PTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTED 263 (426)
T ss_dssp CCSE----------------------------EEEE---EEE--TTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTT
T ss_pred cCCc----------------------------eeec---cCC--CcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCC
Confidence 6532 0111 111 2344556678888888988888886432 0000000
Q ss_pred Cccc-ce--eeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE----EeeecCCCC------CCCCcceEE
Q 040693 241 GAMW-GA--ATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV----LWSTADPSN------GTAPGPVTV 307 (382)
Q Consensus 241 ~~~~-~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~----~W~~~~~~~------~~~~~~~~~ 307 (382)
.... .. .-+++.+++. ...+.|+.+|..+++. .|+...... +....++.+
T Consensus 264 ~p~~~~~~~~~dg~~~~~~-----------------s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~ 326 (426)
T 3c75_H 264 ELLINHPAFSLRSGRLVWP-----------------TYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAY 326 (426)
T ss_dssp SCBCSCCEECTTTCEEEEE-----------------BTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEE
T ss_pred CceeeEeeecCCCCEEEEE-----------------eCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEE
Confidence 0111 11 1145666665 2347899999877653 233211000 001112333
Q ss_pred --eCCEEEEeeec--------CCCcEEEEeCCCCcEeEEEecCCceecceEE-eCC-EEEEEeC-ceeEeecCCccCCCC
Q 040693 308 --ANGVLFGGSTY--------RQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNG-CIYMGNG-YKVTVGFGNKNFTSG 374 (382)
Q Consensus 308 --~~~~v~~~~~~--------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g-~lyv~~~-~g~~~~~~~~~~~~g 374 (382)
+++++|+.... ..+.|.+||.++++++-+++++..-.+-.+. .+. ++|+++. .+. +.-+|..++
T Consensus 327 s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~---VsVID~~t~ 403 (426)
T 3c75_H 327 HRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQT---LHIYDAATG 403 (426)
T ss_dssp EGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTE---EEEEETTTC
T ss_pred cCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCe---EEEEECCCC
Confidence 35789998631 1247999999999999999886532222222 345 6888884 444 345788889
Q ss_pred CeEEEE
Q 040693 375 TSLYAF 380 (382)
Q Consensus 375 ~~l~~~ 380 (382)
+.+=..
T Consensus 404 kvv~tI 409 (426)
T 3c75_H 404 EELRSV 409 (426)
T ss_dssp CEEEEE
T ss_pred CEEEEe
Confidence 887543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.98 E-value=7.3e-08 Score=87.16 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=116.3
Q ss_pred eeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCe
Q 040693 23 ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNH 102 (382)
Q Consensus 23 ~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 102 (382)
+..-....++.||+++.. + .+..|..+|++||+++=+..+.+..+ | ..++..++.
T Consensus 44 ftqGL~~~~~~LyestG~--~---------g~S~v~~vD~~Tgkv~~~~~l~~~~F-------g-------eGit~~g~~ 98 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGL--N---------GRSSIRKVDIESGKTLQQIELGKRYF-------G-------EGISDWKDK 98 (262)
T ss_dssp EEEEEEEETTEEEEEEEE--T---------TEEEEEEECTTTCCEEEEEECCTTCC-------E-------EEEEEETTE
T ss_pred ccceEEEECCEEEEECCC--C---------CCceEEEEECCCCcEEEEEecCCccc-------e-------eEEEEeCCE
Confidence 334445668999998752 1 03589999999999999988743221 1 123444679
Q ss_pred EEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCC
Q 040693 103 VYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPG 182 (382)
Q Consensus 103 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (382)
||+.+.. .+.++.+|++|++++-+++.... .|..
T Consensus 99 ly~ltw~--------------------------------~~~v~v~D~~t~~~~~ti~~~~e-G~gl------------- 132 (262)
T 3nol_A 99 IVGLTWK--------------------------------NGLGFVWNIRNLRQVRSFNYDGE-GWGL------------- 132 (262)
T ss_dssp EEEEESS--------------------------------SSEEEEEETTTCCEEEEEECSSC-CCCE-------------
T ss_pred EEEEEee--------------------------------CCEEEEEECccCcEEEEEECCCC-ceEE-------------
Confidence 9998754 38999999999999999998643 2211
Q ss_pred CCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc---eeeeCCeEEEEecC
Q 040693 183 PSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG---AATDERRIYTNIAN 259 (382)
Q Consensus 183 ~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~---~~~~~~~v~~~~~~ 259 (382)
.. + +..+++.+.++.++.+|++|.+++-+.+.... +..... ....++.||++..
T Consensus 133 ------------t~----d---g~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~---g~~~~~lNELe~~~G~lyan~w- 189 (262)
T 3nol_A 133 ------------TH----N---DQYLIMSDGTPVLRFLDPESLTPVRTITVTAH---GEELPELNELEWVDGEIFANVW- 189 (262)
T ss_dssp ------------EE----C---SSCEEECCSSSEEEEECTTTCSEEEEEECEET---TEECCCEEEEEEETTEEEEEET-
T ss_pred ------------ec----C---CCEEEEECCCCeEEEEcCCCCeEEEEEEeccC---CccccccceeEEECCEEEEEEc-
Confidence 11 1 45677777788999999999999988876421 111111 2235789998753
Q ss_pred ccccccccCCCCCCCCCceEEEEECCCCcEEeeecCC
Q 040693 260 SQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 260 ~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
..+.|..||++||+++=++++.
T Consensus 190 ---------------~~~~I~vIDp~tG~V~~~Id~~ 211 (262)
T 3nol_A 190 ---------------QTNKIVRIDPETGKVTGIIDLN 211 (262)
T ss_dssp ---------------TSSEEEEECTTTCBEEEEEECT
T ss_pred ---------------cCCeEEEEECCCCcEEEEEECC
Confidence 3578999999999999888875
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.4e-07 Score=86.02 Aligned_cols=166 Identities=17% Similarity=0.154 Sum_probs=117.1
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc-cCcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ-KSGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~-~~g~l~ald 221 (382)
+.|..+|++||+++-+....... ....+..+ ++.||+.+ .++.++.+|
T Consensus 44 s~v~~iD~~tg~v~~~i~l~~~~----------------------------fgeGi~~~---g~~lyv~t~~~~~v~viD 92 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIHKMDDSY----------------------------FGEGLTLL---NEKLYQVVWLKNIGFIYD 92 (266)
T ss_dssp CEEEEEETTTCCEEEEEECCTTC----------------------------CEEEEEEE---TTEEEEEETTCSEEEEEE
T ss_pred CEEEEEECCCCCEEEEEecCCCc----------------------------ceEEEEEe---CCEEEEEEecCCEEEEEE
Confidence 79999999999999988865431 01111111 35666665 467999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC-C
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG-T 300 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~-~ 300 (382)
.+|++++-+++.+. ..-|+...+++.+|++ ..++.|+.+|++|.+++-++...... .
T Consensus 93 ~~t~~v~~~i~~g~-----~~g~glt~Dg~~l~vs-----------------~gs~~l~viD~~t~~v~~~I~Vg~~~~p 150 (266)
T 2iwa_A 93 RRTLSNIKNFTHQM-----KDGWGLATDGKILYGS-----------------DGTSILYEIDPHTFKLIKKHNVKYNGHR 150 (266)
T ss_dssp TTTTEEEEEEECCS-----SSCCEEEECSSSEEEE-----------------CSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred CCCCcEEEEEECCC-----CCeEEEEECCCEEEEE-----------------CCCCeEEEEECCCCcEEEEEEECCCCcc
Confidence 99999999988651 1335555588899987 33588999999999999888865310 0
Q ss_pred --CCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc-------------eecceEEe--CCEEEEEeCcee
Q 040693 301 --APGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT-------------IYGGASVS--NGCIYMGNGYKV 362 (382)
Q Consensus 301 --~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~-------------~~~~p~~~--~g~lyv~~~~g~ 362 (382)
...-+...++.+|+... ..+.|..||+++|+++-++++++. .....++. ++++||+.....
T Consensus 151 ~~~~nele~~dg~lyvn~~-~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~ 228 (266)
T 2iwa_A 151 VIRLNELEYINGEVWANIW-QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWP 228 (266)
T ss_dssp CCCEEEEEEETTEEEEEET-TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCS
T ss_pred cccceeEEEECCEEEEecC-CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCC
Confidence 01122334789998874 578999999999999999987531 22344443 579999987655
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=5.1e-07 Score=88.04 Aligned_cols=276 Identities=12% Similarity=0.068 Sum_probs=155.8
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|.++++.+++..........+..+| ++.++.+.. ++.|..+|.++|+.+..+.....
T Consensus 147 wd~~~~~~~~~~~~h~~~V~~l~~~~---~~~l~s~s~--------------dg~i~vwd~~~~~~~~~~~~h~~----- 204 (464)
T 3v7d_B 147 YDSINKKFLLQLSGHDGGVWALKYAH---GGILVSGST--------------DRTVRVWDIKKGCCTHVFEGHNS----- 204 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECS---TTEEEEEET--------------TSCEEEEETTTTEEEEEECCCSS-----
T ss_pred EECCCCcEEEEEeCCCcCEEEEEEcC---CCEEEEEeC--------------CCCEEEEECCCCcEEEEECCCCC-----
Confidence 36677777776654332222222211 355666654 89999999999998877653111
Q ss_pred CCCcCccccCCCceee--CCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEE
Q 040693 82 NEYAGAAIWGSSPSID--PIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~--~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~ 159 (382)
.+ ....+. +++..++.+.. ++.|..+|..+++.....
T Consensus 205 ------~v--~~l~~~~~~~~~~l~s~s~---------------------------------d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 205 ------TV--RCLDIVEYKNIKYIVTGSR---------------------------------DNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp ------CE--EEEEEEESSSCEEEEEEET---------------------------------TSCEEEEECCCCCCC---
T ss_pred ------cc--EEEEEecCCCCCEEEEEcC---------------------------------CCcEEEeeCCCCcccccc
Confidence 01 012222 23344555443 378889998888776654
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG 239 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 239 (382)
............. ...+.+. ....+ ....+..+. ..+..++++..++.+..+|..+++.+..+....
T Consensus 244 ~~~~~~~~~~~~~-~~~~~~~---~~~~~--~~~~v~~~~---~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~---- 310 (464)
T 3v7d_B 244 GEEHDYPLVFHTP-EENPYFV---GVLRG--HMASVRTVS---GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT---- 310 (464)
T ss_dssp ---CCSSEEESCG-GGCTTEE---EEECC--CSSCEEEEE---EETTEEEEEETTSCEEEEETTTTEEEEEECCCS----
T ss_pred cccCCcceEeecc-CCCeEEE---EEccC--ccceEEEEc---CCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC----
Confidence 3322110000000 0000000 00000 011111121 125788899999999999999999988876321
Q ss_pred CCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeee
Q 040693 240 GGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGST 317 (382)
Q Consensus 240 g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (382)
........ ++..++.+ ..++.|..+|.++|+.+.+...... ....+...+..++.++.
T Consensus 311 -~~v~~~~~~~~~~~l~sg-----------------~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~l~s~s~ 370 (464)
T 3v7d_B 311 -DRIYSTIYDHERKRCISA-----------------SMDTTIRIWDLENGELMYTLQGHTA--LVGLLRLSDKFLVSAAA 370 (464)
T ss_dssp -SCEEEEEEETTTTEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECSSEEEEEET
T ss_pred -CCEEEEEEcCCCCEEEEE-----------------eCCCcEEEEECCCCcEEEEEeCCCC--cEEEEEEcCCEEEEEeC
Confidence 12222222 45566665 3458899999999999988875442 22344455677777774
Q ss_pred cCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEE
Q 040693 318 YRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLY 378 (382)
Q Consensus 318 ~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~ 378 (382)
+|.|..+|..+++..++..............+++++++.++|. +.+|. ..+|+.+.
T Consensus 371 --dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~dg~-i~iwd--~~~g~~~~ 426 (464)
T 3v7d_B 371 --DGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ-FNIYN--LRSGKLVH 426 (464)
T ss_dssp --TSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEETTE-EEEEE--TTTCCEEE
T ss_pred --CCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEecCCe-EEEEE--CCCCcEEe
Confidence 9999999999999988886554333333345666666655654 45554 45577764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=4.9e-07 Score=84.45 Aligned_cols=211 Identities=12% Similarity=0.101 Sum_probs=134.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++|+.+.+....+.. + ....+.+++..++.+..+
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~-----------~--~~~~~spdg~~l~~g~~d------------------------ 143 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVD-----------A--WTLAFSPDSQYLATGTHV------------------------ 143 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTC-----------C--CCEEECTTSSEEEEECTT------------------------
T ss_pred CCcEEEEECCCCCEEEEEeCCCcc-----------E--EEEEECCCCCEEEEEcCC------------------------
Confidence 899999999999998887653211 1 135677777777776543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.+..+|..+++..+........+. -..+.++ +..|+++..
T Consensus 144 ---------g~v~i~~~~~~~~~~~~~~~~~~v~---------------------------~~~~spd---g~~lasg~~ 184 (321)
T 3ow8_A 144 ---------GKVNIFGVESGKKEYSLDTRGKFIL---------------------------SIAYSPD---GKYLASGAI 184 (321)
T ss_dssp ---------SEEEEEETTTCSEEEEEECSSSCEE---------------------------EEEECTT---SSEEEEEET
T ss_pred ---------CcEEEEEcCCCceeEEecCCCceEE---------------------------EEEECCC---CCEEEEEcC
Confidence 8999999999999988765433111 1112222 467888889
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+..+|..+|+.+..++.... ....... ++..++.+ ..++.|..+|.++++.+-
T Consensus 185 dg~i~iwd~~~~~~~~~~~~h~~-----~v~~l~~spd~~~l~s~-----------------s~dg~i~iwd~~~~~~~~ 242 (321)
T 3ow8_A 185 DGIINIFDIATGKLLHTLEGHAM-----PIRSLTFSPDSQLLVTA-----------------SDDGYIKIYDVQHANLAG 242 (321)
T ss_dssp TSCEEEEETTTTEEEEEECCCSS-----CCCEEEECTTSCEEEEE-----------------CTTSCEEEEETTTCCEEE
T ss_pred CCeEEEEECCCCcEEEEEcccCC-----ceeEEEEcCCCCEEEEE-----------------cCCCeEEEEECCCcceeE
Confidence 99999999999998877653211 1222222 44555554 345889999999999876
Q ss_pred eecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEE-EeCceeEeecC
Q 040693 292 STADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYM-GNGYKVTVGFG 367 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv-~~~~g~~~~~~ 367 (382)
+....... ...+.+ ++..++.++ .++.|...|..+++.+-++............ .+++.++ ++.+|. +.+|
T Consensus 243 ~~~~h~~~--v~~~~~sp~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~-i~vw 317 (321)
T 3ow8_A 243 TLSGHASW--VLNVAFCPDDTHFVSSS--SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQE-IHIY 317 (321)
T ss_dssp EECCCSSC--EEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCC-EEEE
T ss_pred EEcCCCCc--eEEEEECCCCCEEEEEe--CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCe-EEEE
Confidence 66543321 122223 245666666 4899999999999998887543332333333 3444444 444443 4444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.9e-07 Score=83.76 Aligned_cols=164 Identities=16% Similarity=0.204 Sum_probs=118.5
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc-cCcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ-KSGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~-~~g~l~ald 221 (382)
+.|..+|++||+++=+.+++... ++..-.+. ++.||+.+ .++.++.+|
T Consensus 43 S~v~~vD~~tgkv~~~~~l~~~~-----------------------fgeGi~~~--------~~~ly~ltw~~~~v~v~D 91 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRAEVPPPY-----------------------FGAGIVAW--------RDRLIQLTWRNHEGFVYD 91 (243)
T ss_dssp CEEEEEETTTCCEEEEEECCTTC-----------------------CEEEEEEE--------TTEEEEEESSSSEEEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCCc-----------------------ceeEEEEe--------CCEEEEEEeeCCEEEEEE
Confidence 68999999999999988876541 01111111 45666665 467999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC-
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT- 300 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~- 300 (382)
.+|++++-+++.+. .-|+...+++.+|++ +.+++|+.+|++|.+++-+++......
T Consensus 92 ~~tl~~~~ti~~~~------~Gwglt~dg~~L~vS-----------------dgs~~l~~iDp~t~~~~~~I~V~~~g~~ 148 (243)
T 3mbr_X 92 LATLTPRARFRYPG------EGWALTSDDSHLYMS-----------------DGTAVIRKLDPDTLQQVGSIKVTAGGRP 148 (243)
T ss_dssp TTTTEEEEEEECSS------CCCEEEECSSCEEEE-----------------CSSSEEEEECTTTCCEEEEEECEETTEE
T ss_pred CCcCcEEEEEeCCC------CceEEeeCCCEEEEE-----------------CCCCeEEEEeCCCCeEEEEEEEccCCcc
Confidence 99999999998653 346666788999998 446889999999999998887643111
Q ss_pred --CCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-------------ceecceEEe--CCEEEEEeCce
Q 040693 301 --APGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-------------TIYGGASVS--NGCIYMGNGYK 361 (382)
Q Consensus 301 --~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-------------~~~~~p~~~--~g~lyv~~~~g 361 (382)
...-+...++.+|+... ....|..||++||+++-+.++++ ......++. .++|||+.-..
T Consensus 149 ~~~lNeLe~~~G~lyanvw-~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~w 225 (243)
T 3mbr_X 149 LDNLNELEWVNGELLANVW-LTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKRW 225 (243)
T ss_dssp CCCEEEEEEETTEEEEEET-TTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETTC
T ss_pred cccceeeEEeCCEEEEEEC-CCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCCC
Confidence 11123345889998874 57899999999999999998663 133444553 58899886543
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=7.1e-08 Score=87.94 Aligned_cols=193 Identities=13% Similarity=0.081 Sum_probs=128.2
Q ss_pred CEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCC
Q 040693 32 GAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLY 111 (382)
Q Consensus 32 ~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~ 111 (382)
+.||+++.. + .++.|..+|++||+++-+..+....+ + ..++..++.+|+.+..
T Consensus 32 g~Lyvstg~--~---------~~s~v~~iD~~tg~v~~~i~l~~~~f-------g-------eGi~~~g~~lyv~t~~-- 84 (266)
T 2iwa_A 32 DTLFESTGL--Y---------GRSSVRQVALQTGKVENIHKMDDSYF-------G-------EGLTLLNEKLYQVVWL-- 84 (266)
T ss_dssp TEEEEEECS--T---------TTCEEEEEETTTCCEEEEEECCTTCC-------E-------EEEEEETTEEEEEETT--
T ss_pred CeEEEECCC--C---------CCCEEEEEECCCCCEEEEEecCCCcc-------e-------EEEEEeCCEEEEEEec--
Confidence 799997641 0 15689999999999999988742211 1 1233335789998754
Q ss_pred CCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecC-CCcccccccccCCCCCCCCCCCCCCCCC
Q 040693 112 SVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLG-GYDVWFGACNWYLNPNCPPGPSPDADFG 190 (382)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (382)
.+.+..+|++|++++-+++.. +. .|
T Consensus 85 ------------------------------~~~v~viD~~t~~v~~~i~~g~~~-g~----------------------- 110 (266)
T 2iwa_A 85 ------------------------------KNIGFIYDRRTLSNIKNFTHQMKD-GW----------------------- 110 (266)
T ss_dssp ------------------------------CSEEEEEETTTTEEEEEEECCSSS-CC-----------------------
T ss_pred ------------------------------CCEEEEEECCCCcEEEEEECCCCC-eE-----------------------
Confidence 389999999999999998876 22 11
Q ss_pred CCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCC
Q 040693 191 EAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPS 270 (382)
Q Consensus 191 ~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 270 (382)
- +..+ +..+++...++.|+.+|++|.+++-+...+.....-.........++.+|++..
T Consensus 111 ----g--lt~D---g~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~------------ 169 (266)
T 2iwa_A 111 ----G--LATD---GKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYINGEVWANIW------------ 169 (266)
T ss_dssp ----E--EEEC---SSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET------------
T ss_pred ----E--EEEC---CCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEECCEEEEecC------------
Confidence 0 1112 345667777889999999999999888865311110011122234678998743
Q ss_pred CCCCCCceEEEEECCCCcEEeeecCCCC---------C--CCCcceEEe--CCEEEEeeecCCCcEEEEeCCCC
Q 040693 271 KNSTIAGGWVAMDASNGNVLWSTADPSN---------G--TAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTG 331 (382)
Q Consensus 271 ~~~~~~g~v~a~d~~tG~~~W~~~~~~~---------~--~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG 331 (382)
..+.|..||++||+++=+++++.. . ....-+.++ ++++|++.. ..+.|+.++....
T Consensus 170 ----~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk-~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 170 ----QTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK-LWPKLFEIKLHLV 238 (266)
T ss_dssp ----TSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET-TCSEEEEEEEEEC
T ss_pred ----CCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC-CCCeEEEEEEecc
Confidence 357899999999999888876410 0 011223343 468888773 5678999987654
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-07 Score=91.63 Aligned_cols=167 Identities=11% Similarity=0.123 Sum_probs=110.7
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+++.+..+......+. -..+..+ +..+++++.|+.+..+|
T Consensus 289 d~~i~vwd~~~~~~~~~~~~~~~~v~---------------------------~~~~~~~---~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 289 DNTLIVWDVAQMKCLYILSGHTDRIY---------------------------STIYDHE---RKRCISASMDTTIRIWD 338 (464)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEE---------------------------EEEEETT---TTEEEEEETTSCEEEEE
T ss_pred CCeEEEEECCCCcEEEEecCCCCCEE---------------------------EEEEcCC---CCEEEEEeCCCcEEEEE
Confidence 38899999999999888754322111 1111222 46788899999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
..+|+.+..+.... .........+..++.+ ..++.|..+|+.+++..+....... ..
T Consensus 339 ~~~~~~~~~~~~h~-----~~v~~~~~~~~~l~s~-----------------s~dg~v~vwd~~~~~~~~~~~~~~~-~~ 395 (464)
T 3v7d_B 339 LENGELMYTLQGHT-----ALVGLLRLSDKFLVSA-----------------AADGSIRGWDANDYSRKFSYHHTNL-SA 395 (464)
T ss_dssp TTTTEEEEEECCCS-----SCEEEEEECSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECTTC-CC
T ss_pred CCCCcEEEEEeCCC-----CcEEEEEEcCCEEEEE-----------------eCCCcEEEEECCCCceeeeecCCCC-cc
Confidence 99999998886432 1223333355666665 3458899999999999888765431 11
Q ss_pred CcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEEeCCEEEEEeCceeEe
Q 040693 302 PGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASVSNGCIYMGNGYKVTV 364 (382)
Q Consensus 302 ~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~~~g~lyv~~~~g~~~ 364 (382)
......++.+++.++ ++.|..+|.++|+.+.+...+. .........++.++++.+++...
T Consensus 396 ~~~~~~~~~~l~~~~---dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS---ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDGQS 456 (464)
T ss_dssp EEEEEECSSEEEEEE---TTEEEEEETTTCCEEESCTTTTCSEEEEEEEETTEEEEEEEETTEE
T ss_pred EEEEEeCCCEEEEec---CCeEEEEECCCCcEEehhhccCCCcEEEEEecCCEEEEEEEeCCeE
Confidence 222223345555555 8999999999999998644333 33344555788888877655433
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.5e-07 Score=85.26 Aligned_cols=164 Identities=16% Similarity=0.187 Sum_probs=116.0
Q ss_pred eeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeE
Q 040693 24 TMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHV 103 (382)
Q Consensus 24 ~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v 103 (382)
.......++.||+++.. +|.|..+|++||+++-+. +.+..+ | -.++..++.|
T Consensus 57 tqGL~~~~~~Ly~stG~-------------~g~v~~iD~~Tgkv~~~~-l~~~~F-------g-------eGit~~g~~L 108 (268)
T 3nok_A 57 TQGLVFHQGHFFESTGH-------------QGTLRQLSLESAQPVWME-RLGNIF-------A-------EGLASDGERL 108 (268)
T ss_dssp EEEEEEETTEEEEEETT-------------TTEEEECCSSCSSCSEEE-ECTTCC-------E-------EEEEECSSCE
T ss_pred cceEEEECCEEEEEcCC-------------CCEEEEEECCCCcEEeEE-CCCCcc-------e-------eEEEEeCCEE
Confidence 33455678999998863 678999999999999998 643221 1 1244456789
Q ss_pred EEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCC
Q 040693 104 YIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGP 183 (382)
Q Consensus 104 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (382)
|+.+.. .+.++.+|++|++++-+++.... .|.
T Consensus 109 y~ltw~--------------------------------~~~v~V~D~~Tl~~~~ti~~~~e-GwG--------------- 140 (268)
T 3nok_A 109 YQLTWT--------------------------------EGLLFTWSGMPPQRERTTRYSGE-GWG--------------- 140 (268)
T ss_dssp EEEESS--------------------------------SCEEEEEETTTTEEEEEEECSSC-CCC---------------
T ss_pred EEEEcc--------------------------------CCEEEEEECCcCcEEEEEeCCCc-eeE---------------
Confidence 998754 38999999999999999988643 221
Q ss_pred CCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCcccc
Q 040693 184 SPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHK 263 (382)
Q Consensus 184 ~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~ 263 (382)
+.. .+..+++...++.++.+|++|.+++-+.+.......-...-.....++.||++..
T Consensus 141 ----------Lt~-------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw----- 198 (268)
T 3nok_A 141 ----------LCY-------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECANGVIYANIW----- 198 (268)
T ss_dssp ----------EEE-------ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET-----
T ss_pred ----------Eec-------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEeCCEEEEEEC-----
Confidence 111 1467888888899999999999999888864311100000011234779998753
Q ss_pred ccccCCCCCCCCCceEEEEECCCCcEEeeecCC
Q 040693 264 NFNLKPSKNSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 264 ~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
..+.|..||++||+++=++++.
T Consensus 199 -----------~s~~I~vIDp~TG~V~~~Idl~ 220 (268)
T 3nok_A 199 -----------HSSDVLEIDPATGTVVGVIDAS 220 (268)
T ss_dssp -----------TCSEEEEECTTTCBEEEEEECH
T ss_pred -----------CCCeEEEEeCCCCcEEEEEECC
Confidence 3578999999999998888764
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=6.8e-07 Score=86.76 Aligned_cols=212 Identities=12% Similarity=0.038 Sum_probs=140.3
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.++....... .+ ..+..++..++.+..+
T Consensus 152 dg~i~iwd~~~~~~~~~~~~h~~-----------~v----~~l~~~~~~l~sg~~d------------------------ 192 (435)
T 1p22_A 152 DNTIKIWDKNTLECKRILTGHTG-----------SV----LCLQYDERVIITGSSD------------------------ 192 (435)
T ss_dssp SSCEEEEESSSCCEEEEECCCSS-----------CE----EEEECCSSEEEEEETT------------------------
T ss_pred CCeEEEEeCCCCeEEEEEcCCCC-----------cE----EEEEECCCEEEEEcCC------------------------
Confidence 89999999999999988753111 11 1233345566666543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+|+.+.++...... +..+..+ ++.+++++.
T Consensus 193 ---------g~i~vwd~~~~~~~~~~~~h~~~-----------------------------v~~l~~~---~~~l~s~s~ 231 (435)
T 1p22_A 193 ---------STVRVWDVNTGEMLNTLIHHCEA-----------------------------VLHLRFN---NGMMVTCSK 231 (435)
T ss_dssp ---------SCEEEEESSSCCEEEEECCCCSC-----------------------------EEEEECC---TTEEEEEET
T ss_pred ---------CeEEEEECCCCcEEEEEcCCCCc-----------------------------EEEEEEc---CCEEEEeeC
Confidence 89999999999998877543221 1111111 458888999
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
++.+..+|..+++.......-. ...........++..++++ ..++.|..+|.++++.+.+.
T Consensus 232 dg~i~vwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~l~s~-----------------~~dg~i~vwd~~~~~~~~~~ 292 (435)
T 1p22_A 232 DRSIAVWDMASPTDITLRRVLV--GHRAAVNVVDFDDKYIVSA-----------------SGDRTIKVWNTSTCEFVRTL 292 (435)
T ss_dssp TSCEEEEECSSSSCCEEEEEEC--CCSSCEEEEEEETTEEEEE-----------------ETTSEEEEEETTTCCEEEEE
T ss_pred CCcEEEEeCCCCCCceeeeEec--CCCCcEEEEEeCCCEEEEE-----------------eCCCeEEEEECCcCcEEEEE
Confidence 9999999999887664222111 0111223333477777776 34588999999999999888
Q ss_pred cCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCc
Q 040693 294 ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNK 369 (382)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~ 369 (382)
..... ....+...++.++.++. ++.|..+|..+|+.+..+.............+..|+.++.+|. +.+|.+
T Consensus 293 ~~~~~--~v~~~~~~~~~l~~g~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~-i~vwd~ 363 (435)
T 1p22_A 293 NGHKR--GIACLQYRDRLVVSGSS--DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK-IKVWDL 363 (435)
T ss_dssp ECCSS--CEEEEEEETTEEEEEET--TSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSC-EEEEEH
T ss_pred cCCCC--cEEEEEeCCCEEEEEeC--CCeEEEEECCCCCEEEEEeCCcCcEEEEEecCCEEEEEeCCCc-EEEEEC
Confidence 75432 22334456778888774 9999999999999999887554444444555666666666655 455544
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.91 E-value=9.5e-07 Score=84.70 Aligned_cols=278 Identities=9% Similarity=-0.046 Sum_probs=151.9
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
||.+|++++=+.+.+..+ .+..+| .+..+|++......... -..++.|..||++|++++-+..+......
T Consensus 52 ~D~~t~~~~~~i~~g~~p--~i~~sp--Dg~~lyv~n~~~~~~~r----g~~~~~v~viD~~t~~~~~~i~~~~~~~~-- 121 (373)
T 2mad_H 52 LDAGSGSILGHVNGGFLP--NPVAAH--SGSEFALASTSFSRIAK----GKRTDYVEVFDPVTFLPIADIELPDAPRF-- 121 (373)
T ss_pred EECCCCeEEEEecCCCCC--CeEECC--CCCEEEEEecccccccc----CCCCCeEEEEECCCCcEEEEEECCCcccc--
Confidence 678888887555443211 222222 35678887631100000 00046799999999999988876411000
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEE-Ee
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWY-KQ 160 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~-~~ 160 (382)
..+... ..+.+++++.++|+.... ..+.|..|| ++|+++-+ .+
T Consensus 122 --~~g~~p--~~~~~spDG~~l~v~n~~-------------------------------~~~~v~viD-~t~~~~~~~i~ 165 (373)
T 2mad_H 122 --DVGPYS--WMNANTPNNADLLFFQFA-------------------------------AGPAVGLVV-QGGSSDDQLLS 165 (373)
T ss_pred --ccCCCc--cceEECCCCCEEEEEecC-------------------------------CCCeEEEEE-CCCCEEeEEcC
Confidence 001001 246788899999997532 126899999 99999866 54
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCC
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGG 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g 240 (382)
.+.. ..+. ..+ ....+....+|.+..+|. +|+..+.....+.....
T Consensus 166 ~~~~----------------------------~~~~---~~~--~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~ 211 (373)
T 2mad_H 166 SPTC----------------------------YHIH---PGA--PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA 211 (373)
T ss_pred CCce----------------------------EEEE---eCC--CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence 4321 1111 112 234455667889999999 99998765421110000
Q ss_pred Cc-ccce--eeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE----eeecCCC----C-CCCC-cceEE
Q 040693 241 GA-MWGA--ATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL----WSTADPS----N-GTAP-GPVTV 307 (382)
Q Consensus 241 ~~-~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~----W~~~~~~----~-~~~~-~~~~~ 307 (382)
.. ...+ ..+++.+++. ...+.++.+|..+++.. |...... . .... ..+.+
T Consensus 212 ~p~~~~~~~~~~~~~~~~~-----------------~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWP-----------------VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred cceeecceeEecCCEEEEE-----------------cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEE
Confidence 01 0111 1134444443 23467999999876432 2221100 0 0001 11222
Q ss_pred --eCCEEEEeeec--------CCCcEEEEeCCCCcEeEEEecCCceecceEEeCC--EEEEEeC-ceeEeecCCccCCCC
Q 040693 308 --ANGVLFGGSTY--------RQGPIYAMDVKTGKILWSYDTGATIYGGASVSNG--CIYMGNG-YKVTVGFGNKNFTSG 374 (382)
Q Consensus 308 --~~~~v~~~~~~--------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g--~lyv~~~-~g~~~~~~~~~~~~g 374 (382)
+++++|+.... ..+.|..||.++++++-+++++....+-....++ .+|+++. .+. +.-+|..++
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~---V~ViD~~t~ 351 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGTEV---LHIYDAGAG 351 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCe---EEEEECCCC
Confidence 35789987531 1357999999999999999887632222222344 5777663 433 355778888
Q ss_pred CeEEE
Q 040693 375 TSLYA 379 (382)
Q Consensus 375 ~~l~~ 379 (382)
+.+-.
T Consensus 352 ~vv~~ 356 (373)
T 2mad_H 352 DQDQS 356 (373)
T ss_pred CEEee
Confidence 87643
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-07 Score=83.48 Aligned_cols=169 Identities=21% Similarity=0.223 Sum_probs=117.4
Q ss_pred eeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCC
Q 040693 22 FITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRN 101 (382)
Q Consensus 22 ~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 101 (382)
.+..-....++.||+++.. ++ +..|..+|++||+++=+..+....+ | ..++..++
T Consensus 21 ~ftqGL~~~~~~LyestG~--~g---------~S~v~~vD~~tgkv~~~~~l~~~~f-------g-------eGi~~~~~ 75 (243)
T 3mbr_X 21 AFTEGLFYLRGHLYESTGE--TG---------RSSVRKVDLETGRILQRAEVPPPYF-------G-------AGIVAWRD 75 (243)
T ss_dssp CCEEEEEEETTEEEEEECC--TT---------SCEEEEEETTTCCEEEEEECCTTCC-------E-------EEEEEETT
T ss_pred cccccEEEECCEEEEECCC--CC---------CceEEEEECCCCCEEEEEeCCCCcc-------e-------eEEEEeCC
Confidence 3444556778999998752 11 3589999999999998888743322 1 12333457
Q ss_pred eEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCC
Q 040693 102 HVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPP 181 (382)
Q Consensus 102 ~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 181 (382)
.+|+.+.. .+.++.+|++|++++-+++.... .|.
T Consensus 76 ~ly~ltw~--------------------------------~~~v~v~D~~tl~~~~ti~~~~~-Gwg------------- 109 (243)
T 3mbr_X 76 RLIQLTWR--------------------------------NHEGFVYDLATLTPRARFRYPGE-GWA------------- 109 (243)
T ss_dssp EEEEEESS--------------------------------SSEEEEEETTTTEEEEEEECSSC-CCE-------------
T ss_pred EEEEEEee--------------------------------CCEEEEEECCcCcEEEEEeCCCC-ceE-------------
Confidence 89998753 38999999999999999988643 221
Q ss_pred CCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCcc
Q 040693 182 GPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQ 261 (382)
Q Consensus 182 ~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~ 261 (382)
+. .+ +..++++..++.|+.+|++|.+++-+.+....+..-...-.....++.||+...
T Consensus 110 -------------lt---~d---g~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw--- 167 (243)
T 3mbr_X 110 -------------LT---SD---DSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVNGELLANVW--- 167 (243)
T ss_dssp -------------EE---EC---SSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEETTEEEEEET---
T ss_pred -------------Ee---eC---CCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeCCEEEEEEC---
Confidence 11 11 456777788899999999999999888764211100000011235788998753
Q ss_pred ccccccCCCCCCCCCceEEEEECCCCcEEeeecCC
Q 040693 262 HKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 262 ~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
....|..||++||+++=++++.
T Consensus 168 -------------~s~~I~vIDp~tG~V~~~idl~ 189 (243)
T 3mbr_X 168 -------------LTSRIARIDPASGKVVAWIDLQ 189 (243)
T ss_dssp -------------TTTEEEEECTTTCBEEEEEECG
T ss_pred -------------CCCeEEEEECCCCCEEEEEECC
Confidence 3578999999999998888765
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=98.90 E-value=2.8e-07 Score=85.74 Aligned_cols=61 Identities=8% Similarity=-0.013 Sum_probs=46.3
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
.+.|+.+|+++++.+.+...... ...+.+ +++++|++. .++.|..+|.++++++.+++.++
T Consensus 274 ~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~--~~~~v~v~d~~~~~~~~~~~~~~ 336 (349)
T 1jmx_B 274 LNRLAKYDLKQRKLIKAANLDHT---YYCVAFDKKGDKLYLGG--TFNDLAVFNPDTLEKVKNIKLPG 336 (349)
T ss_dssp ESEEEEEETTTTEEEEEEECSSC---CCEEEECSSSSCEEEES--BSSEEEEEETTTTEEEEEEECSS
T ss_pred cCeEEEEECccCeEEEEEcCCCC---ccceEECCCCCEEEEec--CCCeEEEEeccccceeeeeecCC
Confidence 46899999999999888876542 122333 345778765 37999999999999999998874
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=7.7e-07 Score=89.64 Aligned_cols=230 Identities=10% Similarity=0.043 Sum_probs=146.1
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
++.+|++.. .++.|..+|.++|+++.+...... + ....+++++.++|++..+
T Consensus 148 ~~~~~vs~~-------------~d~~V~v~D~~t~~~~~~i~~g~~------------~--~~v~~spdg~~l~v~~~d- 199 (543)
T 1nir_A 148 PNLFSVTLR-------------DAGQIALVDGDSKKIVKVIDTGYA------------V--HISRMSASGRYLLVIGRD- 199 (543)
T ss_dssp GGEEEEEEG-------------GGTEEEEEETTTCCEEEEEECSTT------------E--EEEEECTTSCEEEEEETT-
T ss_pred CCEEEEEEc-------------CCCeEEEEECCCceEEEEEecCcc------------c--ceEEECCCCCEEEEECCC-
Confidence 577887665 278999999999999988875311 1 135688888899998653
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEEC--CCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDL--DTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDAD 188 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~--~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (382)
+.|..+|. .|++.+-+.+...
T Consensus 200 --------------------------------~~V~v~D~~~~t~~~~~~i~~g~------------------------- 222 (543)
T 1nir_A 200 --------------------------------ARIDMIDLWAKEPTKVAEIKIGI------------------------- 222 (543)
T ss_dssp --------------------------------SEEEEEETTSSSCEEEEEEECCS-------------------------
T ss_pred --------------------------------CeEEEEECcCCCCcEEEEEecCC-------------------------
Confidence 88999999 8999887776421
Q ss_pred CCCCceEEEeee----CceeecEEEEEc-cCcEEEEEeCCCCCeeeeeccCCCCC------CCCcccceee--eCCeEEE
Q 040693 189 FGEAPMMLSMYR----NKVKHDIVVAVQ-KSGFAWALDRDSGSLIWSMEAGPGGL------GGGAMWGAAT--DERRIYT 255 (382)
Q Consensus 189 ~~~~p~~~~~~~----~g~~~~~v~~~~-~~g~l~ald~~tG~~~W~~~~~~~~~------~g~~~~~~~~--~~~~v~~ 255 (382)
.|.-..++. +| ..++++. .++.+..+|..|++++..++...... .......... +++.+|+
T Consensus 223 ---~p~~va~sp~~~~dg---~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v 296 (543)
T 1nir_A 223 ---EARSVESSKFKGYED---RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 296 (543)
T ss_dssp ---EEEEEEECCSTTCTT---TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred ---CcceEEeCCCcCCCC---CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence 232233333 33 5566665 47899999999999998887531100 0101122222 4566666
Q ss_pred EecCccccccccCCCCCCCCCceEEEEECCCCcEEe--eecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCC
Q 040693 256 NIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW--STADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTG 331 (382)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W--~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG 331 (382)
+. ...+.|..+|..+++.+. ++.... ....+.+ ++.++|++.. .++.|.++|.++|
T Consensus 297 s~----------------~~~g~i~vvd~~~~~~l~~~~i~~~~---~~~~~~~spdg~~l~va~~-~~~~v~v~D~~tg 356 (543)
T 1nir_A 297 NV----------------KETGKVLLVNYKDIDNLTVTSIGAAP---FLHDGGWDSSHRYFMTAAN-NSNKVAVIDSKDR 356 (543)
T ss_dssp EE----------------TTTTEEEEEECTTSSSCEEEEEECCS---SCCCEEECTTSCEEEEEEG-GGTEEEEEETTTT
T ss_pred EE----------------CCCCeEEEEEecCCCcceeEEeccCc---CccCceECCCCCEEEEEec-CCCeEEEEECCCC
Confidence 53 235889999999987654 343221 1122233 3456777653 4688999999999
Q ss_pred cEeEEEecCCc-ee-cceE-Ee--CCEEEEEeCc-eeEeecCCccC
Q 040693 332 KILWSYDTGAT-IY-GGAS-VS--NGCIYMGNGY-KVTVGFGNKNF 371 (382)
Q Consensus 332 ~ilw~~~~~~~-~~-~~p~-~~--~g~lyv~~~~-g~~~~~~~~~~ 371 (382)
+++..++.+.. .. .... +. ++++|+++.. ...+.++..++
T Consensus 357 ~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 357 RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred eEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCC
Confidence 99998886421 11 1112 22 4788887652 24456666655
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-06 Score=79.31 Aligned_cols=205 Identities=16% Similarity=0.149 Sum_probs=126.7
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++++.+-+...... .+ ....+.+++..++.+..+
T Consensus 86 d~~i~vwd~~~~~~~~~~~~~~~-----------~v--~~~~~~~~~~~l~s~~~d------------------------ 128 (312)
T 4ery_A 86 DKTLKIWDVSSGKCLKTLKGHSN-----------YV--FCCNFNPQSNLIVSGSFD------------------------ 128 (312)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-----------CE--EEEEECSSSSEEEEEETT------------------------
T ss_pred CCEEEEEECCCCcEEEEEcCCCC-----------CE--EEEEEcCCCCEEEEEeCC------------------------
Confidence 88999999999998876653111 01 124456666667666543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++.+..+......+ .-.....+ +..++++..
T Consensus 129 ---------~~i~iwd~~~~~~~~~~~~~~~~v---------------------------~~~~~~~~---~~~l~~~~~ 169 (312)
T 4ery_A 129 ---------ESVRIWDVKTGKCLKTLPAHSDPV---------------------------SAVHFNRD---GSLIVSSSY 169 (312)
T ss_dssp ---------SCEEEEETTTCCEEEEECCCSSCE---------------------------EEEEECTT---SSEEEEEET
T ss_pred ---------CcEEEEECCCCEEEEEecCCCCcE---------------------------EEEEEcCC---CCEEEEEeC
Confidence 889999999999887765432211 01112222 457888889
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+..+|..+++.+........ ........ ++..++.+ ..++.|..+|.++++.+.
T Consensus 170 d~~i~~wd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~-----------------~~d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 170 DGLCRIWDTASGQCLKTLIDDDN----PPVSFVKFSPNGKYILAA-----------------TLDNTLKLWDYSKGKCLK 228 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCSSC----CCEEEEEECTTSSEEEEE-----------------ETTTEEEEEETTTTEEEE
T ss_pred CCcEEEEECCCCceeeEEeccCC----CceEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCcEEE
Confidence 99999999999988776543211 11111122 44555555 345889999999999988
Q ss_pred eecCCCCCCCCcce--EEeC-CEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEE
Q 040693 292 STADPSNGTAPGPV--TVAN-GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMG 357 (382)
Q Consensus 292 ~~~~~~~~~~~~~~--~~~~-~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~ 357 (382)
.............. ...+ ..++.++ .++.|+.+|..+++++-++............ .++.++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGS--EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEEC--CCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEE
Confidence 87654322111111 1123 4555555 5899999999999998887644333333333 34444444
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.3e-07 Score=83.05 Aligned_cols=229 Identities=17% Similarity=0.099 Sum_probs=135.2
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
.+++|+.... ++.|..+|.++|+++......... . ...+++++..+|+....
T Consensus 9 ~~~~~v~~~~-------------~~~v~~~d~~~~~~~~~~~~~~~~-----------~---~~~~s~dg~~l~~~~~~- 60 (331)
T 3u4y_A 9 SNFGIVVEQH-------------LRRISFFSTDTLEILNQITLGYDF-----------V---DTAITSDCSNVVVTSDF- 60 (331)
T ss_dssp CCEEEEEEGG-------------GTEEEEEETTTCCEEEEEECCCCE-----------E---EEEECSSSCEEEEEEST-
T ss_pred CCEEEEEecC-------------CCeEEEEeCcccceeeeEEccCCc-----------c---eEEEcCCCCEEEEEeCC-
Confidence 3667776652 789999999999998887652110 1 25677787788887653
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcE-EEEEecCCCcccccccccCCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKI-VWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADF 189 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (382)
++.|+.+|+++|+. .........
T Consensus 61 -------------------------------~~~i~~~d~~~~~~~~~~~~~~~~------------------------- 84 (331)
T 3u4y_A 61 -------------------------------CQTLVQIETQLEPPKVVAIQEGQS------------------------- 84 (331)
T ss_dssp -------------------------------TCEEEEEECSSSSCEEEEEEECSS-------------------------
T ss_pred -------------------------------CCeEEEEECCCCceeEEecccCCC-------------------------
Confidence 27999999999998 555443322
Q ss_pred CCCceE-EEeeeCceeecEEEEEccC-c--EEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCcccc
Q 040693 190 GEAPMM-LSMYRNKVKHDIVVAVQKS-G--FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHK 263 (382)
Q Consensus 190 ~~~p~~-~~~~~~g~~~~~v~~~~~~-g--~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~ 263 (382)
|.- ..+..+ +..+++...+ + .+..+|.++++.+...+... ......+ ++..+|+....
T Consensus 85 ---~~~~~~~s~d---g~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~------~~~~~~~spdg~~l~~~~~~---- 148 (331)
T 3u4y_A 85 ---SMADVDITPD---DQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY------DAVGIAISPNGNGLILIDRS---- 148 (331)
T ss_dssp ---CCCCEEECTT---SSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT------TEEEEEECTTSSCEEEEEET----
T ss_pred ---CccceEECCC---CCEEEEecCCCCcccEEEEECCCCCeEEEEECCC------CccceEECCCCCEEEEEecC----
Confidence 111 112222 3455554444 2 89999999999888776532 1122222 55567776332
Q ss_pred ccccCCCCCCCCCce-EEEEECCCCcEEeee---cCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcE---e
Q 040693 264 NFNLKPSKNSTIAGG-WVAMDASNGNVLWST---ADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKI---L 334 (382)
Q Consensus 264 ~~~~~~~~~~~~~g~-v~a~d~~tG~~~W~~---~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~i---l 334 (382)
.+. +..++......+... ..... .....+.+ ++..+|++.. .++.|..+|.+++++ +
T Consensus 149 ------------~~~~i~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~-~~~~v~v~d~~~~~~~~~~ 214 (331)
T 3u4y_A 149 ------------SANTVRRFKIDADGVLFDTGQEFISGG-TRPFNITFTPDGNFAFVANL-IGNSIGILETQNPENITLL 214 (331)
T ss_dssp ------------TTTEEEEEEECTTCCEEEEEEEEECSS-SSEEEEEECTTSSEEEEEET-TTTEEEEEECSSTTSCEEE
T ss_pred ------------CCceEEEEEECCCCcEeecCCccccCC-CCccceEECCCCCEEEEEeC-CCCeEEEEECCCCccccee
Confidence 244 666665543322211 11111 11122233 2346777763 478899999999998 7
Q ss_pred EEEecCCceecceEE-eCC-EEEEEeCceeEeecCCccCCCCCe
Q 040693 335 WSYDTGATIYGGASV-SNG-CIYMGNGYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 335 w~~~~~~~~~~~p~~-~~g-~lyv~~~~g~~~~~~~~~~~~g~~ 376 (382)
.+++.+.. ...+.+ .++ .||+++.....+ +.+|..+|+.
T Consensus 215 ~~~~~~~~-~~~~~~spdg~~l~v~~~~~~~i--~~~d~~~~~~ 255 (331)
T 3u4y_A 215 NAVGTNNL-PGTIVVSRDGSTVYVLTESTVDV--FNFNQLSGTL 255 (331)
T ss_dssp EEEECSSC-CCCEEECTTSSEEEEECSSEEEE--EEEETTTTEE
T ss_pred eeccCCCC-CceEEECCCCCEEEEEEcCCCEE--EEEECCCCce
Confidence 77775432 233334 344 488887644433 3466677776
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.8e-07 Score=83.60 Aligned_cols=192 Identities=10% Similarity=0.036 Sum_probs=118.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++|+.+.++.-... .+ .+..+.+++..++.+..+
T Consensus 76 d~~i~vwd~~~~~~~~~~~~h~~-----------~v--~~~~~~~~~~~l~sgs~D------------------------ 118 (304)
T 2ynn_A 76 DFRIRVFNYNTGEKVVDFEAHPD-----------YI--RSIAVHPTKPYVLSGSDD------------------------ 118 (304)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-----------CE--EEEEECSSSSEEEEEETT------------------------
T ss_pred CCEEEEEECCCCcEEEEEeCCCC-----------cE--EEEEEcCCCCEEEEECCC------------------------
Confidence 89999999999999887654211 11 134566666666665543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceE-EEeeeCceeecEEEEEc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM-LSMYRNKVKHDIVVAVQ 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~v~~~~ 212 (382)
+.|..+|..+++.+-+.-.... .++. ..+.+.+ ...++++.
T Consensus 119 ---------~~v~lWd~~~~~~~~~~~~~h~---------------------------~~v~~v~~~p~~--~~~l~sgs 160 (304)
T 2ynn_A 119 ---------LTVKLWNWENNWALEQTFEGHE---------------------------HFVMCVAFNPKD--PSTFASGC 160 (304)
T ss_dssp ---------SCEEEEEGGGTTEEEEEECCCC---------------------------SCEEEEEECTTC--TTEEEEEE
T ss_pred ---------CeEEEEECCCCcchhhhhcccC---------------------------CcEEEEEECCCC--CCEEEEEe
Confidence 8899999888855433221111 1111 1111111 46788899
Q ss_pred cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
.|+.+..+|..+++.................+.+..++..++.+ ..++.|..+|.++++.+-+
T Consensus 161 ~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-----------------s~D~~i~iWd~~~~~~~~~ 223 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA-----------------SDDLTIKIWDYQTKSCVAT 223 (304)
T ss_dssp TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE-----------------ETTSEEEEEETTTTEEEEE
T ss_pred CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE-----------------cCCCeEEEEeCCCCcccee
Confidence 99999999998888776665332100000111111133445554 3458899999999998888
Q ss_pred ecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 293 TADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 293 ~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
....... ...+.+ ++.+++.++ .++.|...|.++++.+.+++...
T Consensus 224 ~~~h~~~--v~~~~~~p~~~~l~s~s--~Dg~i~iWd~~~~~~~~~~~~~~ 270 (304)
T 2ynn_A 224 LEGHMSN--VSFAVFHPTLPIIISGS--EDGTLKIWNSSTYKVEKTLNVGL 270 (304)
T ss_dssp EECCSSC--EEEEEECSSSSEEEEEE--TTSCEEEEETTTCCEEEEECCSS
T ss_pred eCCCCCC--EEEEEECCCCCEEEEEc--CCCeEEEEECCCCceeeeccCCC
Confidence 7654321 122222 234566666 49999999999999998887654
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.86 E-value=7.9e-07 Score=81.97 Aligned_cols=206 Identities=9% Similarity=0.074 Sum_probs=125.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++++......+.... ..+ ....+.+++..++++..+
T Consensus 118 d~~i~~~d~~~~~~~~~~~~~~~~---------~~i--~~~~~~~~~~~l~~~~~d------------------------ 162 (337)
T 1gxr_A 118 ASTLSIWDLAAPTPRIKAELTSSA---------PAC--YALAISPDSKVCFSCCSD------------------------ 162 (337)
T ss_dssp SSEEEEEECCCC--EEEEEEECSS---------SCE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCcEEEEECCCCCcceeeecccCC---------Cce--EEEEECCCCCEEEEEeCC------------------------
Confidence 889999999998844443332110 001 134566666677776543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++.+.+++...... .-.....+ +..++++..
T Consensus 163 ---------g~v~~~d~~~~~~~~~~~~~~~~i---------------------------~~~~~~~~---~~~l~~~~~ 203 (337)
T 1gxr_A 163 ---------GNIAVWDLHNQTLVRQFQGHTDGA---------------------------SCIDISND---GTKLWTGGL 203 (337)
T ss_dssp ---------SCEEEEETTTTEEEEEECCCSSCE---------------------------EEEEECTT---SSEEEEEET
T ss_pred ---------CcEEEEeCCCCceeeeeecccCce---------------------------EEEEECCC---CCEEEEEec
Confidence 889999999999888775432211 11112222 467888888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+..+|..+++.+....... ....... ++..++++ ..++.|..+|.++++...
T Consensus 204 dg~i~~~d~~~~~~~~~~~~~~------~v~~~~~s~~~~~l~~~-----------------~~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 204 DNTVRSWDLREGRQLQQHDFTS------QIFSLGYCPTGEWLAVG-----------------MESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp TSEEEEEETTTTEEEEEEECSS------CEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTSSCEEE
T ss_pred CCcEEEEECCCCceEeeecCCC------ceEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCCCeEE
Confidence 9999999999999988876432 1122222 45566665 345789999999988753
Q ss_pred eecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eC-CEEEEEeCcee
Q 040693 292 STADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SN-GCIYMGNGYKV 362 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~-g~lyv~~~~g~ 362 (382)
...... ....+.+. +.+++.++ .++.|..+|..+++.+........+. +..+ .+ ..|++++.+|.
T Consensus 261 ~~~~~~---~v~~~~~~~~~~~l~~~~--~dg~i~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~ 329 (337)
T 1gxr_A 261 LHLHES---CVLSLKFAYCGKWFVSTG--KDNLLNAWRTPYGASIFQSKESSSVL-SCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp ECCCSS---CEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSC
T ss_pred EcCCcc---ceeEEEECCCCCEEEEec--CCCcEEEEECCCCeEEEEecCCCcEE-EEEECCCCCEEEEecCCCe
Confidence 322221 12222232 45666666 48999999999999997766544333 2333 33 44555566654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-06 Score=80.41 Aligned_cols=181 Identities=17% Similarity=0.209 Sum_probs=113.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+|+.+.++.......+. ....++ +..++++..++.+..+|
T Consensus 101 D~~i~lWd~~~~~~~~~~~~~~~~~~~---------------------------~~~spd---g~~l~~g~~dg~v~i~~ 150 (321)
T 3ow8_A 101 DAHIRLWDLENGKQIKSIDAGPVDAWT---------------------------LAFSPD---SQYLATGTHVGKVNIFG 150 (321)
T ss_dssp TSEEEEEETTTTEEEEEEECCTTCCCC---------------------------EEECTT---SSEEEEECTTSEEEEEE
T ss_pred CCcEEEEECCCCCEEEEEeCCCccEEE---------------------------EEECCC---CCEEEEEcCCCcEEEEE
Confidence 489999999999999887655432210 111112 46788889999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
..+++..+...... ........ ++..+..+ ..++.|..+|+++|+.+.+.......
T Consensus 151 ~~~~~~~~~~~~~~-----~~v~~~~~spdg~~lasg-----------------~~dg~i~iwd~~~~~~~~~~~~h~~~ 208 (321)
T 3ow8_A 151 VESGKKEYSLDTRG-----KFILSIAYSPDGKYLASG-----------------AIDGIINIFDIATGKLLHTLEGHAMP 208 (321)
T ss_dssp TTTCSEEEEEECSS-----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred cCCCceeEEecCCC-----ceEEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCcEEEEEcccCCc
Confidence 99999988876432 12222222 45555555 34588999999999998877654321
Q ss_pred CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCCCe
Q 040693 300 TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 300 ~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~~ 376 (382)
...+.+ ++.+++.++ .++.|...|..+++.+-.+............ .+++.+++.+....+.+|.+ .+++.
T Consensus 209 --v~~l~~spd~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~--~~~~~ 282 (321)
T 3ow8_A 209 --IRSLTFSPDSQLLVTAS--DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV--GTRTC 282 (321)
T ss_dssp --CCEEEECTTSCEEEEEC--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET--TTTEE
T ss_pred --eeEEEEcCCCCEEEEEc--CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeC--CCCEE
Confidence 223333 234666665 4899999999999988776543333333333 24444444433344556654 44666
Q ss_pred EEEE
Q 040693 377 LYAF 380 (382)
Q Consensus 377 l~~~ 380 (382)
+..|
T Consensus 283 ~~~~ 286 (321)
T 3ow8_A 283 VHTF 286 (321)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-06 Score=84.47 Aligned_cols=260 Identities=12% Similarity=0.037 Sum_probs=149.3
Q ss_pred ceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEE
Q 040693 26 SGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYI 105 (382)
Q Consensus 26 ~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v 105 (382)
.|.-...++||....... ..+.|+.||.+|++++.+.+.+... ...+++++..+|+
T Consensus 39 ~~~pd~~~vyV~~~~~~~---------~~~~V~ViD~~t~~v~~~I~vG~~P---------------~va~spDG~~lyV 94 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFA---------AVTQQFVIDGEAGRVIGMIDGGFLP---------------NPVVADDGSFIAH 94 (386)
T ss_dssp CCCCCTTEEEEEECGGGC---------SSEEEEEEETTTTEEEEEEEECSSC---------------EEEECTTSSCEEE
T ss_pred ccCCCCCEEEEEcCcccC---------CCCEEEEEECCCCeEEEEEECCCCC---------------cEEECCCCCEEEE
Confidence 455667899998752111 1468999999999999999874221 2578888899999
Q ss_pred EcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCC
Q 040693 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSP 185 (382)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (382)
+.... . |..-+...+.|..||.+|++++-+...+....
T Consensus 95 an~~~----~-------------------r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r------------------- 132 (386)
T 3sjl_D 95 ASTVF----S-------------------RIARGERTDYVEVFDPVTLLPTADIELPDAPR------------------- 132 (386)
T ss_dssp EEEEE----E-------------------ETTEEEEEEEEEEECTTTCCEEEEEEETTCCC-------------------
T ss_pred Ecccc----c-------------------ccccCCCCCEEEEEECCCCeEEEEEECCCccc-------------------
Confidence 75210 0 00000012679999999999999987754110
Q ss_pred CCCCCCCceEEEeeeCceeecEEEEEc--cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccce-eeeCCeEEEEecCccc
Q 040693 186 DADFGEAPMMLSMYRNKVKHDIVVAVQ--KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGA-ATDERRIYTNIANSQH 262 (382)
Q Consensus 186 ~~~~~~~p~~~~~~~~g~~~~~v~~~~--~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~-~~~~~~v~~~~~~~~~ 262 (382)
......|.-..+..+| ..+|+.. .++.+..+|.++++++-+++.+. . .+. ......++..
T Consensus 133 -~~~g~~P~~~a~spDG---k~lyVan~~~~~~VsVID~~t~~vv~tI~v~g-----~--~~~~P~g~~~~~~~------ 195 (386)
T 3sjl_D 133 -FLVGTYPWMTSLTPDG---KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD-----C--YHIFPTAPDTFFMH------ 195 (386)
T ss_dssp -CCBSCCGGGEEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEECCS-----E--EEEEEEETTEEEEE------
T ss_pred -cccCCCCceEEEcCCC---CEEEEEEcCCCCeEEEEECCCCcEEEEEECCC-----c--ceeecCCCceeEEE------
Confidence 0011234334444444 4566654 36789999999999999887532 1 111 1122333332
Q ss_pred cccccCCCCCCCCCceEEEEECCC-CcEEeeecCCC---CCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCc--Ee
Q 040693 263 KNFNLKPSKNSTIAGGWVAMDASN-GNVLWSTADPS---NGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGK--IL 334 (382)
Q Consensus 263 ~~~~~~~~~~~~~~g~v~a~d~~t-G~~~W~~~~~~---~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~--il 334 (382)
..+|++..++..+ |++.=+..... .......+.+ .++.+++.+. .|.++++|..+++ ++
T Consensus 196 -----------~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~--~g~V~v~d~~~~~~~v~ 262 (386)
T 3sjl_D 196 -----------CRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--TGKIHQIDLSSGDAKFL 262 (386)
T ss_dssp -----------ETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--TSEEEEEECTTSSCEEC
T ss_pred -----------CCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeC--CCEEEEEECCCCcceee
Confidence 2346777777775 66532111110 0111111222 3565444553 8999999998664 33
Q ss_pred EEEecC------Cc----eecceEE--eCCEEEEEeCce-------eEeecCCccCCCCCeEEEEE
Q 040693 335 WSYDTG------AT----IYGGASV--SNGCIYMGNGYK-------VTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 335 w~~~~~------~~----~~~~p~~--~~g~lyv~~~~g-------~~~~~~~~~~~~g~~l~~~~ 381 (382)
-+..+- .+ ......+ ..++||+....+ ..-.++.+|.+|++.+-.+.
T Consensus 263 ~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~ 328 (386)
T 3sjl_D 263 PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 328 (386)
T ss_dssp CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred cceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE
Confidence 333210 00 1111222 579999986421 12345779999999876654
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-06 Score=82.89 Aligned_cols=240 Identities=10% Similarity=0.049 Sum_probs=138.8
Q ss_pred cceEEEEeC----ccCceeeeeeccCCCCCCCCCC---cCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCC
Q 040693 54 QGSLAKLDA----KTGRILWQTFMLPDNFGKLNEY---AGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQ 126 (382)
Q Consensus 54 ~g~l~ald~----~tG~~lW~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 126 (382)
++.|..+|. .+|+.+|+.............. .+.........+.+++..++++..+
T Consensus 67 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----------------- 129 (425)
T 1r5m_A 67 NSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVEN----------------- 129 (425)
T ss_dssp BTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETT-----------------
T ss_pred CceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCC-----------------
Confidence 899999999 9999877764321111000000 0011011235566666677776543
Q ss_pred CCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeec
Q 040693 127 TTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHD 206 (382)
Q Consensus 127 ~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~ 206 (382)
+.|..+| .+|+.+..+......+. -..+..+ +.
T Consensus 130 ----------------g~i~i~~-~~~~~~~~~~~~~~~v~---------------------------~~~~~~~---~~ 162 (425)
T 1r5m_A 130 ----------------GELRLWN-KTGALLNVLNFHRAPIV---------------------------SVKWNKD---GT 162 (425)
T ss_dssp ----------------SCEEEEE-TTSCEEEEECCCCSCEE---------------------------EEEECTT---SS
T ss_pred ----------------CeEEEEe-CCCCeeeeccCCCccEE---------------------------EEEECCC---CC
Confidence 7899999 67998888764332111 1111222 45
Q ss_pred EEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC----------CCccccee-eeCCeEEEEecCccccccccCCCCCCCC
Q 040693 207 IVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG----------GGAMWGAA-TDERRIYTNIANSQHKNFNLKPSKNSTI 275 (382)
Q Consensus 207 ~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~----------g~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 275 (382)
.|+++..++.+..+|..+++.+..+........ +....... ..++.++++ ..
T Consensus 163 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~ 225 (425)
T 1r5m_A 163 HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIP-----------------GP 225 (425)
T ss_dssp EEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEE-----------------CG
T ss_pred EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEE-----------------cC
Confidence 788888899999999999999988875432100 00011111 245666665 44
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEe-CC
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVS-NG 352 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~-~g 352 (382)
++.|..+|.++++.+......... ...+.+ ++.+++.++ .++.|..+|..+++.+..+............. ++
T Consensus 226 ~g~i~~~d~~~~~~~~~~~~~~~~--i~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 301 (425)
T 1r5m_A 226 KGAIFVYQITEKTPTGKLIGHHGP--ISVLEFNDTNKLLLSAS--DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD 301 (425)
T ss_dssp GGCEEEEETTCSSCSEEECCCSSC--EEEEEEETTTTEEEEEE--TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT
T ss_pred CCeEEEEEcCCCceeeeeccCCCc--eEEEEECCCCCEEEEEc--CCCEEEEEECCCCccceEecCCCccEEEEEECCCC
Confidence 588999999999988877644321 122223 245676666 48999999999999988886444333344443 45
Q ss_pred EEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 353 CIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
.+++++.+|. +.+| |..+++.+..+.
T Consensus 302 ~l~~~~~d~~-i~i~--d~~~~~~~~~~~ 327 (425)
T 1r5m_A 302 KVISCSMDGS-VRLW--SLKQNTLLALSI 327 (425)
T ss_dssp EEEEEETTSE-EEEE--ETTTTEEEEEEE
T ss_pred EEEEEeCCCc-EEEE--ECCCCcEeEecc
Confidence 6666666655 3444 445677776553
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.2e-06 Score=81.64 Aligned_cols=228 Identities=11% Similarity=0.011 Sum_probs=132.5
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.+.+....... ....+.+++..++++..+.
T Consensus 95 dg~i~iwd~~~~~~~~~~~~~~~v--------------~~~~~~~~~~~l~~~~~~~----------------------- 137 (369)
T 3zwl_B 95 DYSIKLWDVSNGQCVATWKSPVPV--------------KRVEFSPCGNYFLAILDNV----------------------- 137 (369)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCE--------------EEEEECTTSSEEEEEECCB-----------------------
T ss_pred CCeEEEEECCCCcEEEEeecCCCe--------------EEEEEccCCCEEEEecCCc-----------------------
Confidence 899999999999999988742111 1355666666666655420
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCC--CceEEEeeeCceeecEEEEE
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGE--APMMLSMYRNKVKHDIVVAV 211 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~g~~~~~v~~~ 211 (382)
....+.|..+|..+++............... ...... ......+..+ +..++++
T Consensus 138 -----~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~---~~~l~~~ 193 (369)
T 3zwl_B 138 -----MKNPGSINIYEIERDSATHELTKVSEEPIHK----------------IITHEGLDAATVAGWSTK---GKYIIAG 193 (369)
T ss_dssp -----TTBCCEEEEEEEEECTTTCCEEEECSSCSEE----------------EECCTTCCCEEEEEECGG---GCEEEEE
T ss_pred -----cCCCCEEEEEEecCCccceeecccccceeee----------------ccCCcCccceeEEEEcCC---CCEEEEE
Confidence 1123678888877766544433221100000 000001 1111222222 4578888
Q ss_pred ccCcEEEEEeCCC-CCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCc
Q 040693 212 QKSGFAWALDRDS-GSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGN 288 (382)
Q Consensus 212 ~~~g~l~ald~~t-G~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~ 288 (382)
..++.+..+|..+ ++.+..+.... ........ ++..++++ ..++.|..+|.++++
T Consensus 194 ~~dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~-----------------~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 194 HKDGKISKYDVSNNYEYVDSIDLHE-----KSISDMQFSPDLTYFITS-----------------SRDTNSFLVDVSTLQ 251 (369)
T ss_dssp ETTSEEEEEETTTTTEEEEEEECCS-----SCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTCC
T ss_pred cCCCEEEEEECCCCcEeEEEEecCC-----CceeEEEECCCCCEEEEe-----------------cCCceEEEEECCCCc
Confidence 8899999999998 67776666422 12222222 45556555 345889999999999
Q ss_pred EEeeecCCCCCCCCcceEE--eCCEEEEeeecCCC--------------cEEEEeCCCCcEeEEEecCCceecceEE-eC
Q 040693 289 VLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQG--------------PIYAMDVKTGKILWSYDTGATIYGGASV-SN 351 (382)
Q Consensus 289 ~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g--------------~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~ 351 (382)
.+........ ...+.+ .+..++++.. ++ .+..+|..+++.+..+...........+ .+
T Consensus 252 ~~~~~~~~~~---~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (369)
T 3zwl_B 252 VLKKYETDCP---LNTAVITPLKEFIILGGG--QEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQ 326 (369)
T ss_dssp EEEEEECSSC---EEEEEECSSSSEEEEEEC--CC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTT
T ss_pred eeeeecCCCC---ceeEEecCCCceEEEeec--CCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCC
Confidence 9988874431 122222 2456666553 44 7899999999999888755444444444 24
Q ss_pred CEEEE-EeCceeEeecCCcc
Q 040693 352 GCIYM-GNGYKVTVGFGNKN 370 (382)
Q Consensus 352 g~lyv-~~~~g~~~~~~~~~ 370 (382)
+++++ ++.+|. +.+|.++
T Consensus 327 ~~~l~s~~~dg~-v~iw~~~ 345 (369)
T 3zwl_B 327 GTSYASGGEDGF-IRLHHFE 345 (369)
T ss_dssp SSEEEEEETTSE-EEEEEEC
T ss_pred CCEEEEEcCCCe-EEEEECc
Confidence 55444 445544 5555544
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.3e-06 Score=85.48 Aligned_cols=257 Identities=11% Similarity=0.076 Sum_probs=151.4
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCc--cCceeeeeeccCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAK--TGRILWQTFMLPDNFG 79 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~--tG~~lW~~~~~~~~~~ 79 (382)
||.+|++++.+...+..+ ..+..+| .+..+|++.. ++.|..+|.. |++++.+...+...
T Consensus 182 iD~~t~~v~~~i~~g~~p-~~v~~Sp--DGr~lyv~~~--------------dg~V~viD~~~~t~~~v~~i~~G~~P-- 242 (567)
T 1qks_A 182 IDGSTYEIKTVLDTGYAV-HISRLSA--SGRYLFVIGR--------------DGKVNMIDLWMKEPTTVAEIKIGSEA-- 242 (567)
T ss_dssp EETTTCCEEEEEECSSCE-EEEEECT--TSCEEEEEET--------------TSEEEEEETTSSSCCEEEEEECCSEE--
T ss_pred EECCCCeEEEEEeCCCCc-cceEECC--CCCEEEEEcC--------------CCeEEEEECCCCCCcEeEEEecCCCC--
Confidence 688999999988765321 1222223 3456888764 7899999996 99999887763221
Q ss_pred CCCCCcCccccCCCceee----CCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcE
Q 040693 80 KLNEYAGAAIWGSSPSID----PIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKI 155 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~----~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~ 155 (382)
....++ +++.++|++... .+.+..||..|.++
T Consensus 243 ------------~~ia~s~~~~pDGk~l~v~n~~--------------------------------~~~v~ViD~~t~~~ 278 (567)
T 1qks_A 243 ------------RSIETSKMEGWEDKYAIAGAYW--------------------------------PPQYVIMDGETLEP 278 (567)
T ss_dssp ------------EEEEECCSTTCTTTEEEEEEEE--------------------------------TTEEEEEETTTCCE
T ss_pred ------------ceeEEccccCCCCCEEEEEEcc--------------------------------CCeEEEEECCCCcE
Confidence 124566 477899997653 38899999999999
Q ss_pred EEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCC
Q 040693 156 VWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGP 235 (382)
Q Consensus 156 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~ 235 (382)
+.......... .. ..+...|.+..+...-.....++.....|.+..+|..+.+.+-......
T Consensus 279 ~~~i~~~~~~~---~~---------------~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~ 340 (567)
T 1qks_A 279 KKIQSTRGMTY---DE---------------QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISA 340 (567)
T ss_dssp EEEEECCEECT---TT---------------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEEC
T ss_pred EEEEecccccc---cc---------------ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeec
Confidence 99988654210 00 0000123333221111112334445566888888887765332222111
Q ss_pred CCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecC-CCCCC-CCcceEEe--C
Q 040693 236 GGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTAD-PSNGT-APGPVTVA--N 309 (382)
Q Consensus 236 ~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~-~~~~~-~~~~~~~~--~ 309 (382)
+.......+ ++..+|+... .++.|..+|.++++++...+. ...+. ..+...+. +
T Consensus 341 ----~~~~~d~~~~pdgr~~~va~~----------------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~~~p~~ 400 (567)
T 1qks_A 341 ----ERFLHDGGLDGSHRYFITAAN----------------ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTF 400 (567)
T ss_dssp ----CSSEEEEEECTTSCEEEEEEG----------------GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTT
T ss_pred ----cccccCceECCCCCEEEEEeC----------------CCCeEEEEECCCCcEEEEEeccCcCCCCccceeeECCCC
Confidence 111111122 5666777632 347799999999999999987 44221 12222233 3
Q ss_pred CEEEEeeecCCCcEEEEeCCC-------CcEeEEEecCCce--ecceEEeCCEEEEEeC
Q 040693 310 GVLFGGSTYRQGPIYAMDVKT-------GKILWSYDTGATI--YGGASVSNGCIYMGNG 359 (382)
Q Consensus 310 ~~v~~~~~~~~g~l~~ld~~t-------G~ilw~~~~~~~~--~~~p~~~~g~lyv~~~ 359 (382)
+.+|+.+...++.|.+||.++ -+++-+.+..+.. +-...-....|||.+.
T Consensus 401 g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 401 GPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp EEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT
T ss_pred CcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecC
Confidence 678876532357899999987 5677776664321 1111113457888763
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-06 Score=85.45 Aligned_cols=258 Identities=12% Similarity=0.015 Sum_probs=150.1
Q ss_pred EEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcC
Q 040693 29 YYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATG 108 (382)
Q Consensus 29 v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~ 108 (382)
....++||........ .+.|..||++|++++++.+++... ...+++++..+|++..
T Consensus 82 ~~~~~vyV~n~~~~~~---------~~~VsVID~~t~~vv~~I~vG~~P---------------gia~SpDgk~lyVan~ 137 (426)
T 3c75_H 82 PDARRVYIQDPAHFAA---------ITQQFVIDGSTGRILGMTDGGFLP---------------HPVAAEDGSFFAQAST 137 (426)
T ss_dssp CCTTEEEEEECTTTCS---------SEEEEEEETTTTEEEEEEEECSSC---------------EEEECTTSSCEEEEEE
T ss_pred CCCCEEEEECCCcCCC---------CCeEEEEECCCCEEEEEEECCCCC---------------ceEECCCCCEEEEEec
Confidence 4567899987531000 178999999999999999985321 2678889999999852
Q ss_pred CCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCC
Q 040693 109 NLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDAD 188 (382)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (382)
... +...+...+.|..||..|++++-+...+....+ .
T Consensus 138 ~~~-----------------------~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~--------------------~ 174 (426)
T 3c75_H 138 VFE-----------------------RIARGKRTDYVEVFDPVTFLPIADIELPDAPRF--------------------L 174 (426)
T ss_dssp EEE-----------------------ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC--------------------C
T ss_pred ccc-----------------------ccccCCCCCEEEEEECCCCcEEEEEECCCcccc--------------------c
Confidence 100 000000136899999999999999887511000 0
Q ss_pred CCCCceEEEeeeCceeecEEEEEcc--CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccc
Q 040693 189 FGEAPMMLSMYRNKVKHDIVVAVQK--SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFN 266 (382)
Q Consensus 189 ~~~~p~~~~~~~~g~~~~~v~~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~ 266 (382)
....|.-+.++.+ +..+|+... ++.+..+|.++++++.+++.+. . .....++...|+..
T Consensus 175 ~g~~P~~~~~spD---Gk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g------~-~~~~p~g~~~~v~~--------- 235 (426)
T 3c75_H 175 VGTYQWMNALTPD---NKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD------C-YHIFPASPTVFYMN--------- 235 (426)
T ss_dssp BSCCGGGSEECTT---SSEEEEEECSSSCEEEEEETTTTEEEEEEECCS------E-EEEEEEETTEEEEE---------
T ss_pred cCCCcceEEEcCC---CCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC------c-eeeccCCCcEEEEE---------
Confidence 0011222222223 356666542 5789999999999999988642 1 11111334555543
Q ss_pred cCCCCCCCCCceEEEEECCCCcEEeeec----CCCCCCCC-cceEEeCCEEEEeeecCCCcEEEEeCCCCcE----eEEE
Q 040693 267 LKPSKNSTIAGGWVAMDASNGNVLWSTA----DPSNGTAP-GPVTVANGVLFGGSTYRQGPIYAMDVKTGKI----LWSY 337 (382)
Q Consensus 267 ~~~~~~~~~~g~v~a~d~~tG~~~W~~~----~~~~~~~~-~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~i----lw~~ 337 (382)
..+|++..++..++++.++.. ........ .+..-+++.+|+.+. .+.++.+|..++++ .|+.
T Consensus 236 -------~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~--~g~V~ViD~~~~~~~v~~~~~~ 306 (426)
T 3c75_H 236 -------CRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY--TGKIFQADLTAEGATFRAPIEA 306 (426)
T ss_dssp -------ETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT--TSEEEEEEECSSCEEECCCEES
T ss_pred -------cCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC--CCcEEEEeccCCceEEeeeeee
Confidence 335788889998898887542 11111001 111123466666664 78999999876553 2332
Q ss_pred ecCC----cee---c-ceEE--eCCEEEEEeCce-------eEeecCCccCCCCCeEEEEE
Q 040693 338 DTGA----TIY---G-GASV--SNGCIYMGNGYK-------VTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 338 ~~~~----~~~---~-~p~~--~~g~lyv~~~~g-------~~~~~~~~~~~~g~~l~~~~ 381 (382)
.... +.. . ...+ .+++|||.+.++ ..-.+..+|..+.+.+-.+.
T Consensus 307 ~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~ 367 (426)
T 3c75_H 307 LTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE 367 (426)
T ss_dssp SCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEE
Confidence 1100 000 0 1122 468999987531 11235668888888876553
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.5e-07 Score=86.57 Aligned_cols=223 Identities=10% Similarity=0.040 Sum_probs=130.0
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+|.|..+|.++|+.+.......... ...+ .+..+.+++.+++.+..+
T Consensus 102 dg~v~lWd~~~~~~~~~~~~~~~~H-------~~~V--~~v~~spdg~~l~sgs~d------------------------ 148 (344)
T 4gqb_B 102 SGAVELWELDENETLIVSKFCKYEH-------DDIV--STVSVLSSGTQAVSGSKD------------------------ 148 (344)
T ss_dssp TSEEEEEEECTTSSCEEEEEEEECC-------SSCE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCEEEEEeccCCCceeEeeccccCC-------CCCE--EEEEECCCCCEEEEEeCC------------------------
Confidence 8999999999999877655321110 0111 234566676677666543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+|+.+-.+......+. -.....++ ..+++.+..
T Consensus 149 ---------~~i~iwd~~~~~~~~~~~~h~~~V~---------------------------~~~~~~~~--~~~l~s~s~ 190 (344)
T 4gqb_B 149 ---------ICIKVWDLAQQVVLSSYRAHAAQVT---------------------------CVAASPHK--DSVFLSCSE 190 (344)
T ss_dssp ---------SCEEEEETTTTEEEEEECCCSSCEE---------------------------EEEECSSC--TTEEEEEET
T ss_pred ---------CeEEEEECCCCcEEEEEcCcCCceE---------------------------EEEecCCC--CCceeeecc
Confidence 8899999999999877654322111 11112222 456778888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
|+.+..+|..+++..-++..... +........ +++.+++.. ..++.|..+|.++++.+.
T Consensus 191 D~~v~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~p~~~~~l~sg----------------~~dg~v~~wd~~~~~~~~ 251 (344)
T 4gqb_B 191 DNRILLWDTRCPKPASQIGCSAP---GYLPTSLAWHPQQSEVFVFG----------------DENGTVSLVDTKSTSCVL 251 (344)
T ss_dssp TSCEEEEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEE----------------ETTSEEEEEESCC--CCE
T ss_pred ccccccccccccceeeeeeccee---eccceeeeecCCCCcceEEe----------------ccCCcEEEEECCCCcEEE
Confidence 99999999999998877653321 111112222 344444432 345889999999999988
Q ss_pred eecCCCCCCCCcceEEe--CC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeec
Q 040693 292 STADPSNGTAPGPVTVA--NG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGF 366 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~ 366 (382)
+....... ...+.+. +. ++..++ .++.|..+|..+++++ +..-......+... .+..|+++.+....+.+
T Consensus 252 ~~~~h~~~--v~~v~fsp~g~~~lasgs--~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 252 SSAVHSQC--VTGLVFSPHSVPFLASLS--EDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp EEECCSSC--EEEEEECSSSSCCEEEEE--TTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEcCCCCC--EEEEEEccCCCeEEEEEe--CCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 87754421 2233332 32 455555 4899999999998865 33222222333333 34557765554344556
Q ss_pred CCccC
Q 040693 367 GNKNF 371 (382)
Q Consensus 367 ~~~~~ 371 (382)
+.+..
T Consensus 327 w~v~~ 331 (344)
T 4gqb_B 327 HVVPT 331 (344)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 66544
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-05 Score=73.05 Aligned_cols=255 Identities=15% Similarity=0.138 Sum_probs=145.7
Q ss_pred CCcCCCC-ceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 1 AVKRSNG-KLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 1 ald~~tG-k~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
++|..++ ++..+..........+. ...++.++.+.. +|.|..+|.++++..-........
T Consensus 1 ~~d~~~~~~~~~~l~~h~~~v~~~~---~~~~~~l~s~~~--------------dg~v~vw~~~~~~~~~~~~~~~~~-- 61 (313)
T 3odt_A 1 GIDPFTGYQLSATLKGHDQDVRDVV---AVDDSKVASVSR--------------DGTVRLWSKDDQWLGTVVYTGQGF-- 61 (313)
T ss_dssp ----CCCCEEEEEECCCSSCEEEEE---EEETTEEEEEET--------------TSEEEEEEESSSEEEEEEEECSSC--
T ss_pred CCCccccHHHHHHhhCCCCCcEEEE---ecCCCEEEEEEc--------------CCcEEEEECCCCEEEEEeecCCcc--
Confidence 3677776 33333333322221221 134566776664 899999999999888776642111
Q ss_pred CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCC---cEE
Q 040693 80 KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTG---KIV 156 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG---~~~ 156 (382)
+ ....+.+++..++.+..+ +.+..+|..+. +.+
T Consensus 62 ---------v--~~~~~~~~~~~l~~~~~d---------------------------------g~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 62 ---------L--NSVCYDSEKELLLFGGKD---------------------------------TMINGVPLFATSGEDPL 97 (313)
T ss_dssp ---------E--EEEEEETTTTEEEEEETT---------------------------------SCEEEEETTCCTTSCC-
T ss_pred ---------E--EEEEECCCCCEEEEecCC---------------------------------CeEEEEEeeecCCCCcc
Confidence 1 135566677777776654 67777776543 334
Q ss_pred EEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCC
Q 040693 157 WYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPG 236 (382)
Q Consensus 157 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~ 236 (382)
........ + +..+.. .+..++++..++.+..+| +++..........
T Consensus 98 ~~~~~~~~----------------------------~-i~~~~~---~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~ 143 (313)
T 3odt_A 98 YTLIGHQG----------------------------N-VCSLSF---QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA 143 (313)
T ss_dssp CEECCCSS----------------------------C-EEEEEE---ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS
T ss_pred cchhhccc----------------------------C-EEEEEe---cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC
Confidence 33322211 1 122222 256888899999999999 6777777764321
Q ss_pred CCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEE
Q 040693 237 GLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLF 313 (382)
Q Consensus 237 ~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~ 313 (382)
....... +++.++++ ..++.|..+| .++....................++.++
T Consensus 144 -----~v~~~~~~~~~~~~l~~~-----------------~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 199 (313)
T 3odt_A 144 -----SVWDAKVVSFSENKFLTA-----------------SADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGHFI 199 (313)
T ss_dssp -----CEEEEEEEETTTTEEEEE-----------------ETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTEEE
T ss_pred -----ceeEEEEccCCCCEEEEE-----------------ECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCeEE
Confidence 2222111 45666665 3457899999 4555555543221111122223456666
Q ss_pred EeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 314 GGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 314 ~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
.++ .++.|..+|..+++.+.++............ .+++|+.++.+|. +.+| |..+++.+..+.
T Consensus 200 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~-v~iw--d~~~~~~~~~~~ 263 (313)
T 3odt_A 200 SCS--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGDIVSCGEDRT-VRIW--SKENGSLKQVIT 263 (313)
T ss_dssp EEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSCEEEEETTSE-EEEE--CTTTCCEEEEEE
T ss_pred Ecc--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCCEEEEecCCE-EEEE--ECCCCceeEEEe
Confidence 666 4999999999999999998755443444444 3557777777766 4444 455678777654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.4e-06 Score=88.03 Aligned_cols=228 Identities=11% Similarity=0.034 Sum_probs=138.5
Q ss_pred cCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCC
Q 040693 3 KRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLN 82 (382)
Q Consensus 3 d~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~ 82 (382)
|..+|+.+.+......+...+..+| .+..++++.. ++.|..+|..+|+.+.+.......
T Consensus 41 d~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~--------------dg~i~vw~~~~~~~~~~~~~~~~~----- 99 (814)
T 3mkq_A 41 NYETQVEVRSIQVTETPVRAGKFIA--RKNWIIVGSD--------------DFRIRVFNYNTGEKVVDFEAHPDY----- 99 (814)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEEEG--GGTEEEEEET--------------TSEEEEEETTTCCEEEEEECCSSC-----
T ss_pred ECCCCceEEEEecCCCcEEEEEEeC--CCCEEEEEeC--------------CCeEEEEECCCCcEEEEEecCCCC-----
Confidence 4556666555553322222222222 2345666654 889999999999998887642111
Q ss_pred CCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecC
Q 040693 83 EYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLG 162 (382)
Q Consensus 83 ~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~ 162 (382)
+ ....+.+++..++.+..+ +.|..+|..++...-+.-..
T Consensus 100 ------v--~~~~~s~~~~~l~~~~~d---------------------------------g~i~vw~~~~~~~~~~~~~~ 138 (814)
T 3mkq_A 100 ------I--RSIAVHPTKPYVLSGSDD---------------------------------LTVKLWNWENNWALEQTFEG 138 (814)
T ss_dssp ------E--EEEEECSSSSEEEEEETT---------------------------------SEEEEEEGGGTSEEEEEEEC
T ss_pred ------E--EEEEEeCCCCEEEEEcCC---------------------------------CEEEEEECCCCceEEEEEcC
Confidence 1 135666676677766543 88999998877433222111
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCCCCCceE-EEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCC
Q 040693 163 GYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM-LSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGG 241 (382)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~ 241 (382)
.. .++. ....+. .+..++++..++.+..+|..+++...............
T Consensus 139 ~~---------------------------~~v~~~~~~p~--~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~ 189 (814)
T 3mkq_A 139 HE---------------------------HFVMCVAFNPK--DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNY 189 (814)
T ss_dssp CS---------------------------SCEEEEEEETT--EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCE
T ss_pred CC---------------------------CcEEEEEEEcC--CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEE
Confidence 11 1111 112221 15678888999999999999998888876543111111
Q ss_pred cccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecC
Q 040693 242 AMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYR 319 (382)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~ 319 (382)
..+.+..++..++++ ..++.|..+|..+++.+.+....... ...+.. ++.+++.++ .
T Consensus 190 ~~~~~~~~~~~l~~~-----------------~~dg~i~~~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~--~ 248 (814)
T 3mkq_A 190 VDYYPLPDKPYMITA-----------------SDDLTIKIWDYQTKSCVATLEGHMSN--VSFAVFHPTLPIIISGS--E 248 (814)
T ss_dssp EEECCSTTCCEEEEE-----------------CTTSEEEEEETTTTEEEEEEECCSSC--EEEEEECSSSSEEEEEE--T
T ss_pred EEEEECCCCCEEEEE-----------------eCCCEEEEEECCCCcEEEEEcCCCCC--EEEEEEcCCCCEEEEEe--C
Confidence 122221145566665 44588999999999998887654321 122222 235666666 4
Q ss_pred CCcEEEEeCCCCcEeEEEecCCc
Q 040693 320 QGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 320 ~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
+|.|..+|..+++.++.+.....
T Consensus 249 dg~v~vwd~~~~~~~~~~~~~~~ 271 (814)
T 3mkq_A 249 DGTLKIWNSSTYKVEKTLNVGLE 271 (814)
T ss_dssp TSCEEEEETTTCSEEEEECCSSS
T ss_pred CCeEEEEECCCCcEEEEeecCCC
Confidence 89999999999999999876644
|
| >3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-06 Score=83.96 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=71.7
Q ss_pred cceEEEEECCC---CcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc-----
Q 040693 142 SNSLLALDLDT---GKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK----- 213 (382)
Q Consensus 142 ~g~v~ald~~t---G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~----- 213 (382)
...+||||..+ .+++|++........ -...+.|.|..+. ++ +..++++..
T Consensus 163 G~~~yALDVT~P~~p~~LWe~~~~~~~~L-------------------G~t~s~P~I~~~~-~g--~w~~vfG~GY~~~~ 220 (570)
T 3hx6_A 163 GKGLFALDVTDPANIKLLWEIGVDQEPDL-------------------GYSFPKPTVARLH-NG--KWAVVTGNGYSSMN 220 (570)
T ss_dssp CSEEEEEECSSGGGCEEEEEEETTTCTTC-------------------CBCCSCCEEEECT-TS--SEEEEEECCBSCTT
T ss_pred CcEEEEEECCCCCCCceeEEECCCCcccc-------------------CccccCCEEEEec-CC--CEEEEEccccCCCC
Confidence 46899999765 899999984332111 1133788888654 33 456666653
Q ss_pred -CcEEEEEeCCCCCeeeeeccCCCCCCCCccccee-ee------CCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 214 -SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAA-TD------ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 214 -~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~-~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
...||.+|++||+++|++..+...........+. +| -+.+|++ +..|+|+.||+.
T Consensus 221 ~~~~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaG-----------------Dl~GnlWRfDl~ 283 (570)
T 3hx6_A 221 DKAALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAG-----------------DLQGNLWRFDLI 283 (570)
T ss_dssp CCEEEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEE-----------------ETTSEEEEEECS
T ss_pred CccEEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEE-----------------eCCCcEEEEEcC
Confidence 4589999999999999998653211111112222 22 2578887 677999999998
Q ss_pred CCcE
Q 040693 286 NGNV 289 (382)
Q Consensus 286 tG~~ 289 (382)
+...
T Consensus 284 ~~~~ 287 (570)
T 3hx6_A 284 AGKV 287 (570)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 8765
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-06 Score=82.66 Aligned_cols=227 Identities=12% Similarity=0.022 Sum_probs=136.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+| .+|+.+.+...... .+ ....+.+++..++.+..+
T Consensus 129 dg~i~i~~-~~~~~~~~~~~~~~-----------~v--~~~~~~~~~~~l~~~~~d------------------------ 170 (425)
T 1r5m_A 129 NGELRLWN-KTGALLNVLNFHRA-----------PI--VSVKWNKDGTHIISMDVE------------------------ 170 (425)
T ss_dssp TSCEEEEE-TTSCEEEEECCCCS-----------CE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEe-CCCCeeeeccCCCc-----------cE--EEEEECCCCCEEEEEecC------------------------
Confidence 88999999 68888887653211 11 135566666677776543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++.+.++...........+.... +.........+. .++.++++..
T Consensus 171 ---------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-------~~~~~~~~~~ 225 (425)
T 1r5m_A 171 ---------NVTILWNVISGTVMQHFELKETGGSSINAENHS---------GDGSLGVDVEWV-------DDDKFVIPGP 225 (425)
T ss_dssp ---------CCEEEEETTTTEEEEEECCC------------------------CCCBSCCEEE-------ETTEEEEECG
T ss_pred ---------CeEEEEECCCCcEEEEeeccccCccceeecccc---------CCcceeeEEEEc-------CCCEEEEEcC
Confidence 889999999999999887654310000000000 000000111111 2567888999
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+..+|..+++.+..+.... ........ ++..++++ ..++.|..+|.++++.+.
T Consensus 226 ~g~i~~~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~~~~~~~~ 283 (425)
T 1r5m_A 226 KGAIFVYQITEKTPTGKLIGHH-----GPISVLEFNDTNKLLLSA-----------------SDDGTLRIWHGGNGNSQN 283 (425)
T ss_dssp GGCEEEEETTCSSCSEEECCCS-----SCEEEEEEETTTTEEEEE-----------------ETTSCEEEECSSSBSCSE
T ss_pred CCeEEEEEcCCCceeeeeccCC-----CceEEEEECCCCCEEEEE-----------------cCCCEEEEEECCCCccce
Confidence 9999999999998888776322 12222222 45556655 345789999999999888
Q ss_pred eecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCC
Q 040693 292 STADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGN 368 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~ 368 (382)
........ ...+.. .+++++.++ .++.|..+|..+++.+..+...........+ .+..|++++.+|. +.+|.
T Consensus 284 ~~~~~~~~--i~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~i~~ 358 (425)
T 1r5m_A 284 CFYGHSQS--IVSASWVGDDKVISCS--MDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ-VNVYD 358 (425)
T ss_dssp EECCCSSC--EEEEEEETTTEEEEEE--TTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC-EEEEE
T ss_pred EecCCCcc--EEEEEECCCCEEEEEe--CCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe-EEEEE
Confidence 87643321 222223 245666666 4899999999999999988764433333333 2344555555554 45555
Q ss_pred cc
Q 040693 369 KN 370 (382)
Q Consensus 369 ~~ 370 (382)
+.
T Consensus 359 ~~ 360 (425)
T 1r5m_A 359 LK 360 (425)
T ss_dssp CH
T ss_pred CC
Confidence 44
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=98.75 E-value=8.8e-06 Score=74.81 Aligned_cols=224 Identities=16% Similarity=0.119 Sum_probs=136.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+|+.+-....... .+ ....+.+++..++.+..+
T Consensus 44 dg~i~iw~~~~~~~~~~~~~h~~-----------~v--~~~~~~~~~~~l~s~~~d------------------------ 86 (312)
T 4ery_A 44 DKLIKIWGAYDGKFEKTISGHKL-----------GI--SDVAWSSDSNLLVSASDD------------------------ 86 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCSS-----------CE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEeCCCcccchhhccCCC-----------ce--EEEEEcCCCCEEEEECCC------------------------
Confidence 88999999999988766542110 01 134566666677666543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++.+-.++.....+. -..+..+ +..++++..
T Consensus 87 ---------~~i~vwd~~~~~~~~~~~~~~~~v~---------------------------~~~~~~~---~~~l~s~~~ 127 (312)
T 4ery_A 87 ---------KTLKIWDVSSGKCLKTLKGHSNYVF---------------------------CCNFNPQ---SNLIVSGSF 127 (312)
T ss_dssp ---------SEEEEEETTTCCEEEEEECCSSCEE---------------------------EEEECSS---SSEEEEEET
T ss_pred ---------CEEEEEECCCCcEEEEEcCCCCCEE---------------------------EEEEcCC---CCEEEEEeC
Confidence 8999999999998877754432111 0111122 467888899
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+..+|..+++.+..+.... ........ ++..++.+ ..++.|..+|.++++.+-
T Consensus 128 d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~-----------------~~d~~i~~wd~~~~~~~~ 185 (312)
T 4ery_A 128 DESVRIWDVKTGKCLKTLPAHS-----DPVSAVHFNRDGSLIVSS-----------------SYDGLCRIWDTASGQCLK 185 (312)
T ss_dssp TSCEEEEETTTCCEEEEECCCS-----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCCEEE
T ss_pred CCcEEEEECCCCEEEEEecCCC-----CcEEEEEEcCCCCEEEEE-----------------eCCCcEEEEECCCCceee
Confidence 9999999999999887766322 12222222 34555554 345889999999999877
Q ss_pred eecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc----eecceEEeCCEEEEEeCceeEee
Q 040693 292 STADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT----IYGGASVSNGCIYMGNGYKVTVG 365 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~----~~~~p~~~~g~lyv~~~~g~~~~ 365 (382)
+....... ....+.+ ++..++.++ .++.|..+|..+++.+.++..... ........+++++++.+....+.
T Consensus 186 ~~~~~~~~-~~~~~~~~~~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~ 262 (312)
T 4ery_A 186 TLIDDDNP-PVSFVKFSPNGKYILAAT--LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262 (312)
T ss_dssp EECCSSCC-CEEEEEECTTSSEEEEEE--TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEE
T ss_pred EEeccCCC-ceEEEEECCCCCEEEEEc--CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEE
Confidence 66433211 1112223 245666666 489999999999999887754322 11112223555555544333345
Q ss_pred cCCccCCCCCeEEEE
Q 040693 366 FGNKNFTSGTSLYAF 380 (382)
Q Consensus 366 ~~~~~~~~g~~l~~~ 380 (382)
+|.+ .+++.+-.+
T Consensus 263 vwd~--~~~~~~~~~ 275 (312)
T 4ery_A 263 IWNL--QTKEIVQKL 275 (312)
T ss_dssp EEET--TTCCEEEEE
T ss_pred EEEC--CCchhhhhh
Confidence 5544 456665544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.74 E-value=8.6e-06 Score=76.07 Aligned_cols=161 Identities=9% Similarity=0.074 Sum_probs=84.4
Q ss_pred EEeeeCceeecEEEEEccCcEEEEEeCC-CCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCC
Q 040693 196 LSMYRNKVKHDIVVAVQKSGFAWALDRD-SGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKN 272 (382)
Q Consensus 196 ~~~~~~g~~~~~v~~~~~~g~l~ald~~-tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~ 272 (382)
..+.++| . +++....++.+..+|.. +|++.-....... .+......++ ++..+|+...
T Consensus 146 ~~~spdg--~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~--~g~~p~~~~~spdg~~l~v~~~-------------- 206 (347)
T 3hfq_A 146 TDLTPDN--R-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTME--AGFGPRHLVFSPDGQYAFLAGE-------------- 206 (347)
T ss_dssp EEECTTS--C-EEEEETTTTEEEEEEECTTSCEEEEEEEECC--TTCCEEEEEECTTSSEEEEEET--------------
T ss_pred EEECCCC--c-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcC--CCCCCceEEECCCCCEEEEEeC--------------
Confidence 3344455 3 55555667789888887 6765433221110 1111111222 5566777532
Q ss_pred CCCCceEEEEECC--CCcEEeeecCCCCCC------CCcceEEe--CCEEEEeeecCCCcEEEEeCC-CC--cEeEEEec
Q 040693 273 STIAGGWVAMDAS--NGNVLWSTADPSNGT------APGPVTVA--NGVLFGGSTYRQGPIYAMDVK-TG--KILWSYDT 339 (382)
Q Consensus 273 ~~~~g~v~a~d~~--tG~~~W~~~~~~~~~------~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~-tG--~ilw~~~~ 339 (382)
..+.+..++.. +|+..-......... ....+.+. +.++|+... .++.|..+|.+ +| +.+...+.
T Consensus 207 --~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~-~~~~v~v~~~~~~g~~~~~~~~~~ 283 (347)
T 3hfq_A 207 --LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR-GYNTLAVFAVTADGHLTLIQQIST 283 (347)
T ss_dssp --TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE-TTTEEEEEEECGGGCEEEEEEEEC
T ss_pred --CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeC-CCCEEEEEEECCCCcEEEeEEEec
Confidence 23555555544 676533222111000 01113332 456777664 46788888876 34 33444444
Q ss_pred CCceecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEE
Q 040693 340 GATIYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLY 378 (382)
Q Consensus 340 ~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~ 378 (382)
.+......++ .+..||+++.....+.+|.+|..+|++.-
T Consensus 284 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 284 EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp SSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 2222233334 34468998877666888999999998763
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=2.9e-05 Score=70.43 Aligned_cols=234 Identities=11% Similarity=0.095 Sum_probs=134.8
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
++.+|++.. .++.|+.+|++ |+.+++......... .... . ...+++...+.+|++...
T Consensus 40 ~g~l~v~~~-------------~~~~i~~~d~~-g~~~~~~~~~~~~~~---~~~~--p--~~i~~~~~~g~l~v~~~~- 97 (286)
T 1q7f_A 40 QNDIIVADT-------------NNHRIQIFDKE-GRFKFQFGECGKRDS---QLLY--P--NRVAVVRNSGDIIVTERS- 97 (286)
T ss_dssp TCCEEEEEG-------------GGTEEEEECTT-SCEEEEECCBSSSTT---CBSS--E--EEEEEETTTTEEEEEECG-
T ss_pred CCCEEEEEC-------------CCCEEEEECCC-CcEEEEecccCCCcc---cccC--c--eEEEEEcCCCeEEEEcCC-
Confidence 477888754 27789999985 888887654211110 0000 0 123454455788887631
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFG 190 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (382)
..+.|+.+| .+|+.+.++.....
T Consensus 98 ------------------------------~~~~i~~~d-~~g~~~~~~~~~~~-------------------------- 120 (286)
T 1q7f_A 98 ------------------------------PTHQIQIYN-QYGQFVRKFGATIL-------------------------- 120 (286)
T ss_dssp ------------------------------GGCEEEEEC-TTSCEEEEECTTTC--------------------------
T ss_pred ------------------------------CCCEEEEEC-CCCcEEEEecCccC--------------------------
Confidence 027899999 67998877644321
Q ss_pred CCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCC
Q 040693 191 EAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKP 269 (382)
Q Consensus 191 ~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~ 269 (382)
..|.-..+..+ +.++++...++.++.+|. +|+.++.+..... .....+.++ .++.+|++..
T Consensus 121 ~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~---~~~p~~i~~~~~g~l~v~~~----------- 182 (286)
T 1q7f_A 121 QHPRGVTVDNK---GRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKH---LEFPNGVVVNDKQEIFISDN----------- 182 (286)
T ss_dssp SCEEEEEECTT---SCEEEEETTTTEEEEECT-TSCEEEEEECTTT---CSSEEEEEECSSSEEEEEEG-----------
T ss_pred CCceEEEEeCC---CCEEEEECCCCEEEEEcC-CCCEEEEeCCCCc---cCCcEEEEECCCCCEEEEEC-----------
Confidence 12222222222 234444456788999996 4888777653211 112223333 3567888632
Q ss_pred CCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCC-cEEEEeCCCCcEeEEEecCCce--ec
Q 040693 270 SKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQG-PIYAMDVKTGKILWSYDTGATI--YG 345 (382)
Q Consensus 270 ~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g-~l~~ld~~tG~ilw~~~~~~~~--~~ 345 (382)
..+.|..+|+ +|+.+.++...........+.++ ++.+|++.. .++ .|..+|. +|+.+..+...... ..
T Consensus 183 -----~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~-~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~ 254 (286)
T 1q7f_A 183 -----RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADN-HNNFNLTIFTQ-DGQLISALESKVKHAQCF 254 (286)
T ss_dssp -----GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC-SSSCEEEEECT-TSCEEEEEEESSCCSCEE
T ss_pred -----CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeC-CCCEEEEEECC-CCCEEEEEcccCCCCcce
Confidence 2467999997 67777776543211112234444 567888774 344 8999996 58888887654322 11
Q ss_pred ceEE-eCCEEEEEeCceeEeecCCcc
Q 040693 346 GASV-SNGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 346 ~p~~-~~g~lyv~~~~g~~~~~~~~~ 370 (382)
..++ .+|+||+++.++ .+.+|.+.
T Consensus 255 ~i~~~~~g~l~vs~~~~-~v~v~~~~ 279 (286)
T 1q7f_A 255 DVALMDDGSVVLASKDY-RLYIYRYV 279 (286)
T ss_dssp EEEEETTTEEEEEETTT-EEEEEECS
T ss_pred eEEECCCCcEEEECCCC-eEEEEEcc
Confidence 2333 478999997654 34555543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-06 Score=86.61 Aligned_cols=221 Identities=14% Similarity=0.077 Sum_probs=134.4
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
++++||.... ++.|..+|.+|++++.+..++.... ...+++++.++|++..+
T Consensus 166 ~~~~~V~~~~-------------~~~V~viD~~t~~v~~~i~~g~~p~--------------~v~~SpDGr~lyv~~~d- 217 (567)
T 1qks_A 166 ENLFSVTLRD-------------AGQIALIDGSTYEIKTVLDTGYAVH--------------ISRLSASGRYLFVIGRD- 217 (567)
T ss_dssp GGEEEEEETT-------------TTEEEEEETTTCCEEEEEECSSCEE--------------EEEECTTSCEEEEEETT-
T ss_pred CceEEEEeCC-------------CCeEEEEECCCCeEEEEEeCCCCcc--------------ceEECCCCCEEEEEcCC-
Confidence 4678887652 7899999999999999988743211 35788888899997543
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECC--CCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLD--TGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDAD 188 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~--tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (382)
+.|..||.. |++++.+.+...
T Consensus 218 --------------------------------g~V~viD~~~~t~~~v~~i~~G~------------------------- 240 (567)
T 1qks_A 218 --------------------------------GKVNMIDLWMKEPTTVAEIKIGS------------------------- 240 (567)
T ss_dssp --------------------------------SEEEEEETTSSSCCEEEEEECCS-------------------------
T ss_pred --------------------------------CeEEEEECCCCCCcEeEEEecCC-------------------------
Confidence 789999996 999998776542
Q ss_pred CCCCceEEEee----eCceeecEEEEE-ccCcEEEEEeCCCCCeeeeeccCCCCCCC------Cccccee-e-eCCeEEE
Q 040693 189 FGEAPMMLSMY----RNKVKHDIVVAV-QKSGFAWALDRDSGSLIWSMEAGPGGLGG------GAMWGAA-T-DERRIYT 255 (382)
Q Consensus 189 ~~~~p~~~~~~----~~g~~~~~v~~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~g------~~~~~~~-~-~~~~v~~ 255 (382)
.|.-..++ .+| ..+++. ...+.+..+|..|.+++..+........+ ....... . ++...++
T Consensus 241 ---~P~~ia~s~~~~pDG---k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv 314 (567)
T 1qks_A 241 ---EARSIETSKMEGWED---KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIV 314 (567)
T ss_dssp ---EEEEEEECCSTTCTT---TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEE
T ss_pred ---CCceeEEccccCCCC---CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEE
Confidence 23323333 133 345544 44588999999999999988754211000 0011111 1 2333444
Q ss_pred EecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC-CCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEe
Q 040693 256 NIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT-APGPVTVANGVLFGGSTYRQGPIYAMDVKTGKIL 334 (382)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~il 334 (382)
.. ...|.|..+|.++.+.+=...+..... ....+.-++.++|++.. ..+.|.++|.++++++
T Consensus 315 ~~----------------~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~-~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 315 NV----------------KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN-ARNKLVVIDTKEGKLV 377 (567)
T ss_dssp EE----------------TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG-GGTEEEEEETTTTEEE
T ss_pred Ee----------------cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC-CCCeEEEEECCCCcEE
Confidence 32 234788888887765332222221111 01111113456777664 5788999999999999
Q ss_pred EEEec-CC-cee-cceE-Ee--CCEEEEEeC
Q 040693 335 WSYDT-GA-TIY-GGAS-VS--NGCIYMGNG 359 (382)
Q Consensus 335 w~~~~-~~-~~~-~~p~-~~--~g~lyv~~~ 359 (382)
...++ +. ..- ..+. +. .+.+|+++.
T Consensus 378 ~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~ 408 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANFVHPTFGPVWATSH 408 (567)
T ss_dssp EEEECSSSSBCCTTCEEEEETTTEEEEEEEB
T ss_pred EEEeccCcCCCCccceeeECCCCCcEEEeCC
Confidence 99988 32 111 1222 22 367777654
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-05 Score=75.44 Aligned_cols=237 Identities=14% Similarity=0.031 Sum_probs=133.5
Q ss_pred eEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCC
Q 040693 56 SLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKC 135 (382)
Q Consensus 56 ~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (382)
.|+.+|.+|++++-+.+.+.. ..+.+.+++..+|+..... .+
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~~---------------p~i~~spDg~~lyv~n~~~-----------------------~~ 89 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGFL---------------PNPVAAHSGSEFALASTSF-----------------------SR 89 (373)
T ss_pred EEEEEECCCCeEEEEecCCCC---------------CCeEECCCCCEEEEEeccc-----------------------cc
Confidence 789999999999866554211 1367888999999975310 00
Q ss_pred CCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc-c-
Q 040693 136 IEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ-K- 213 (382)
Q Consensus 136 ~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~-~- 213 (382)
..-+..++.|..||++|++++-+......... .....|.-..+.++| ..+++.. .
T Consensus 90 ~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~--------------------~~g~~p~~~~~spDG---~~l~v~n~~~ 146 (373)
T 2mad_H 90 IAKGKRTDYVEVFDPVTFLPIADIELPDAPRF--------------------DVGPYSWMNANTPNN---ADLLFFQFAA 146 (373)
T ss_pred cccCCCCCeEEEEECCCCcEEEEEECCCcccc--------------------ccCCCccceEECCCC---CEEEEEecCC
Confidence 00011236799999999999988876521000 000123222333344 4566554 3
Q ss_pred CcEEEEEeCCCCCeeee-eccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 214 SGFAWALDRDSGSLIWS-MEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~-~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
++.+..+| ++++++-. .+.+. + .....+++..|+.. ..++.+..+|. +|+..++
T Consensus 147 ~~~v~viD-~t~~~~~~~i~~~~-----~--~~~~~~~~~~~~~~----------------~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 147 GPAVGLVV-QGGSSDDQLLSSPT-----C--YHIHPGAPSTFYLL----------------CAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred CCeEEEEE-CCCCEEeEEcCCCc-----e--EEEEeCCCceEEEE----------------cCCCCEEEEEC-CCcEEEE
Confidence 57899999 99999877 66431 1 11112444555543 34588999999 9999876
Q ss_pred ecCCC-----CCCCCcc-eEEeCCEEEEeeecCCCcEEEEeCCCCcE--eEEEecC-----------Ccee-cceEEeCC
Q 040693 293 TADPS-----NGTAPGP-VTVANGVLFGGSTYRQGPIYAMDVKTGKI--LWSYDTG-----------ATIY-GGASVSNG 352 (382)
Q Consensus 293 ~~~~~-----~~~~~~~-~~~~~~~v~~~~~~~~g~l~~ld~~tG~i--lw~~~~~-----------~~~~-~~p~~~~g 352 (382)
..... ......+ ...+++.+|+.+. .+.++.+|..+++. +-++++. .+.. ......++
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVY--SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcC--CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence 54211 0100111 1223444444443 78999999976632 2222221 1100 01111568
Q ss_pred EEEEEeCcee-------EeecCCccCCCCCeEEEE
Q 040693 353 CIYMGNGYKV-------TVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 353 ~lyv~~~~g~-------~~~~~~~~~~~g~~l~~~ 380 (382)
+||+....+. ...++.+|..+++.+-..
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i 314 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI 314 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEE
Confidence 9999865321 123566788888776544
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-05 Score=74.07 Aligned_cols=144 Identities=10% Similarity=0.052 Sum_probs=89.6
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..++++..++.+..+|..+++.+..+.... ........ ++..++++ ..++.|..+
T Consensus 153 ~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~l~~~-----------------~~dg~i~~~ 210 (337)
T 1gxr_A 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHT-----DGASCIDISNDGTKLWTG-----------------GLDNTVRSW 210 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCS-----SCEEEEEECTTSSEEEEE-----------------ETTSEEEEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCceeeeeeccc-----CceEEEEECCCCCEEEEE-----------------ecCCcEEEE
Confidence 4678888889999999999999888776422 12222222 45566665 345889999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCE-EEEEe
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGC-IYMGN 358 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~-lyv~~ 358 (382)
|.++++.+.+...... ...+.+ ++..+++++ .++.|+.+|..+++... ............. .+++ |+.++
T Consensus 211 d~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~--~~~~i~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~ 284 (337)
T 1gxr_A 211 DLREGRQLQQHDFTSQ---IFSLGYCPTGEWLAVGM--ESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYCGKWFVSTG 284 (337)
T ss_dssp ETTTTEEEEEEECSSC---EEEEEECTTSSEEEEEE--TTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTTSSEEEEEE
T ss_pred ECCCCceEeeecCCCc---eEEEEECCCCCEEEEEc--CCCcEEEEECCCCCeEE-EcCCccceeEEEECCCCCEEEEec
Confidence 9999999988875432 122223 245677766 48999999999888653 3222222223333 2444 44455
Q ss_pred CceeEeecCCccCCCCCeEEE
Q 040693 359 GYKVTVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 359 ~~g~~~~~~~~~~~~g~~l~~ 379 (382)
.+|. +.+|. ..+++.+..
T Consensus 285 ~dg~-i~~~~--~~~~~~~~~ 302 (337)
T 1gxr_A 285 KDNL-LNAWR--TPYGASIFQ 302 (337)
T ss_dssp TTSE-EEEEE--TTTCCEEEE
T ss_pred CCCc-EEEEE--CCCCeEEEE
Confidence 5544 44554 445666643
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.69 E-value=5.5e-06 Score=77.12 Aligned_cols=210 Identities=16% Similarity=0.080 Sum_probs=126.7
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.+.++..... .+ ....+.+++..++.+..+
T Consensus 53 dg~i~vwd~~~~~~~~~~~~h~~-----------~v--~~~~~~~~~~~l~s~~~d------------------------ 95 (369)
T 3zwl_B 53 DSSASVWYSLNGERLGTLDGHTG-----------TI--WSIDVDCFTKYCVTGSAD------------------------ 95 (369)
T ss_dssp SSCEEEEETTTCCEEEEECCCSS-----------CE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCEEEEEeCCCchhhhhhhhcCC-----------cE--EEEEEcCCCCEEEEEeCC------------------------
Confidence 88999999999999887753111 11 135566666677666543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++.+..+..... ..-.....+ +..++++..
T Consensus 96 ---------g~i~iwd~~~~~~~~~~~~~~~----------------------------v~~~~~~~~---~~~l~~~~~ 135 (369)
T 3zwl_B 96 ---------YSIKLWDVSNGQCVATWKSPVP----------------------------VKRVEFSPC---GNYFLAILD 135 (369)
T ss_dssp ---------TEEEEEETTTCCEEEEEECSSC----------------------------EEEEEECTT---SSEEEEEEC
T ss_pred ---------CeEEEEECCCCcEEEEeecCCC----------------------------eEEEEEccC---CCEEEEecC
Confidence 8999999999999998873321 111111222 356666666
Q ss_pred C-----cEEEEEeCCCCCeeeeeccCCCCC-------CC-Ccccceee--eCCeEEEEecCccccccccCCCCCCCCCce
Q 040693 214 S-----GFAWALDRDSGSLIWSMEAGPGGL-------GG-GAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGG 278 (382)
Q Consensus 214 ~-----g~l~ald~~tG~~~W~~~~~~~~~-------~g-~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (382)
+ +.+..+|..+++............ .+ ........ ++..++++ ..++.
T Consensus 136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~dg~ 198 (369)
T 3zwl_B 136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-----------------HKDGK 198 (369)
T ss_dssp CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE-----------------ETTSE
T ss_pred CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE-----------------cCCCE
Confidence 6 889888888776544333211000 00 01111111 44555555 34588
Q ss_pred EEEEECCC-CcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEE
Q 040693 279 WVAMDASN-GNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCI 354 (382)
Q Consensus 279 v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~l 354 (382)
|..+|+++ ++.+......... ...+.+ ++.+++.++ .++.|..+|..+++.+..+............ .+..+
T Consensus 199 i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l 274 (369)
T 3zwl_B 199 ISKYDVSNNYEYVDSIDLHEKS--ISDMQFSPDLTYFITSS--RDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFI 274 (369)
T ss_dssp EEEEETTTTTEEEEEEECCSSC--EEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEE
T ss_pred EEEEECCCCcEeEEEEecCCCc--eeEEEECCCCCEEEEec--CCceEEEEECCCCceeeeecCCCCceeEEecCCCceE
Confidence 99999999 6777777654321 122223 345666666 4899999999999999998855443322222 34555
Q ss_pred EEEeCce
Q 040693 355 YMGNGYK 361 (382)
Q Consensus 355 yv~~~~g 361 (382)
++++.++
T Consensus 275 ~~~~~~~ 281 (369)
T 3zwl_B 275 ILGGGQE 281 (369)
T ss_dssp EEEECCC
T ss_pred EEeecCC
Confidence 5555544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.68 E-value=8.3e-06 Score=77.97 Aligned_cols=222 Identities=10% Similarity=0.102 Sum_probs=136.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++++.+....... ..+ ....+.+++..++.+..+
T Consensus 118 dg~i~iwd~~~~~~~~~~~~h~-----------~~v--~~~~~~~~~~~l~s~s~d------------------------ 160 (420)
T 3vl1_A 118 EGDIKVLDSNFNLQREIDQAHV-----------SEI--TKLKFFPSGEALISSSQD------------------------ 160 (420)
T ss_dssp TSCEEEECTTSCEEEEETTSSS-----------SCE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCCEEEEeCCCcceeeeccccc-----------Ccc--EEEEECCCCCEEEEEeCC------------------------
Confidence 7889999998888766542210 111 235566666677766543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++.+.++......+ .-..+..+ +..++++..
T Consensus 161 ---------~~i~iwd~~~~~~~~~~~~h~~~v---------------------------~~~~~~~~---~~~l~s~~~ 201 (420)
T 3vl1_A 161 ---------MQLKIWSVKDGSNPRTLIGHRATV---------------------------TDIAIIDR---GRNVLSASL 201 (420)
T ss_dssp ---------SEEEEEETTTCCCCEEEECCSSCE---------------------------EEEEEETT---TTEEEEEET
T ss_pred ---------CeEEEEeCCCCcCceEEcCCCCcE---------------------------EEEEEcCC---CCEEEEEcC
Confidence 899999999999887775432211 11112222 467888889
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCC-------------------Ccccceee--eCCeEEEEecCccccccccCCCCC
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGG-------------------GAMWGAAT--DERRIYTNIANSQHKNFNLKPSKN 272 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g-------------------~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~ 272 (382)
|+.+..+|..+++.+..+......... ........ ++..++++
T Consensus 202 d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---------------- 265 (420)
T 3vl1_A 202 DGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG---------------- 265 (420)
T ss_dssp TSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE----------------
T ss_pred CCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE----------------
Confidence 999999999999999888743210000 00000011 33444444
Q ss_pred CCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe--CC-EEEEeeecCCCcEEEEeCCCCcE-eEEEec-CCceecce
Q 040693 273 STIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA--NG-VLFGGSTYRQGPIYAMDVKTGKI-LWSYDT-GATIYGGA 347 (382)
Q Consensus 273 ~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~g~l~~ld~~tG~i-lw~~~~-~~~~~~~p 347 (382)
..++.|..+|+++++...+....... ....+... +. +++.++ .+|.|..+|..+++. +.++.. ........
T Consensus 266 -~~dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~ 341 (420)
T 3vl1_A 266 -HVSGVITVHNVFSKEQTIQLPSKFTC-SCNSLTVDGNNANYIYAGY--ENGMLAQWDLRSPECPVGEFLINEGTPINNV 341 (420)
T ss_dssp -ETTSCEEEEETTTCCEEEEECCTTSS-CEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEEESTTSCEEEE
T ss_pred -cCCCeEEEEECCCCceeEEcccccCC-CceeEEEeCCCCCEEEEEe--CCCeEEEEEcCCCcCchhhhhccCCCCceEE
Confidence 34588999999999998887643211 12223332 33 677777 489999999998854 555554 22333344
Q ss_pred EEeCCEEEEEeCceeEeecCCccC
Q 040693 348 SVSNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 348 ~~~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
...+++++++.+....+.+|.+..
T Consensus 342 ~~~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 342 YFAAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp EEETTEEEEEETTTEEEEEEEECC
T ss_pred EeCCCCEEEEecCCccEEEEeccC
Confidence 556777777766556677777654
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.67 E-value=6.2e-06 Score=79.01 Aligned_cols=256 Identities=11% Similarity=0.014 Sum_probs=143.3
Q ss_pred cCCCCceeeeeecC-cCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 3 KRSNGKLVWKTKLD-DHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 3 d~~tGk~~W~~~~~-~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
|.++|+........ ......+..+| .+..++++.. +|.|..+|..+++.+.+......
T Consensus 119 ~~~~~~~~~~~~~~~~~~v~~v~~s~--~~~~l~~~~~--------------dg~i~iwd~~~~~~~~~~~~~~~----- 177 (401)
T 4aez_A 119 NADSGSVSALAETDESTYVASVKWSH--DGSFLSVGLG--------------NGLVDIYDVESQTKLRTMAGHQA----- 177 (401)
T ss_dssp ETTTCCEEEEEECCTTCCEEEEEECT--TSSEEEEEET--------------TSCEEEEETTTCCEEEEECCCSS-----
T ss_pred eCCCCcEeEeeecCCCCCEEEEEECC--CCCEEEEECC--------------CCeEEEEECcCCeEEEEecCCCC-----
Confidence 55666665555542 11122233333 2345555554 88999999999998887653111
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCC-CcEEEEEe
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDT-GKIVWYKQ 160 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~t-G~~~W~~~ 160 (382)
.+ ..... +...++.+..+ +.|..+|..+ ++.+....
T Consensus 178 ------~v--~~~~~--~~~~l~~~~~d---------------------------------g~i~i~d~~~~~~~~~~~~ 214 (401)
T 4aez_A 178 ------RV--GCLSW--NRHVLSSGSRS---------------------------------GAIHHHDVRIANHQIGTLQ 214 (401)
T ss_dssp ------CE--EEEEE--ETTEEEEEETT---------------------------------SEEEEEETTSSSCEEEEEE
T ss_pred ------ce--EEEEE--CCCEEEEEcCC---------------------------------CCEEEEecccCcceeeEEc
Confidence 01 11233 33466665543 8999999884 55555544
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCC
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGG 240 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g 240 (382)
.....+ .-.....+ +..+++++.++.+..+|..+++.+........
T Consensus 215 ~~~~~v---------------------------~~~~~~~~---~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~---- 260 (401)
T 4aez_A 215 GHSSEV---------------------------CGLAWRSD---GLQLASGGNDNVVQIWDARSSIPKFTKTNHNA---- 260 (401)
T ss_dssp CCSSCE---------------------------EEEEECTT---SSEEEEEETTSCEEEEETTCSSEEEEECCCSS----
T ss_pred CCCCCe---------------------------eEEEEcCC---CCEEEEEeCCCeEEEccCCCCCccEEecCCcc----
Confidence 332211 11112222 46788888999999999999999888763221
Q ss_pred Ccccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEee
Q 040693 241 GAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGS 316 (382)
Q Consensus 241 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~ 316 (382)
....... ++..+++.... ..++.|..+|..+++.+........ ...+.. ++..+++++
T Consensus 261 -~v~~~~~~p~~~~ll~~~~g--------------s~d~~i~i~d~~~~~~~~~~~~~~~---v~~~~~s~~~~~l~~~~ 322 (401)
T 4aez_A 261 -AVKAVAWCPWQSNLLATGGG--------------TMDKQIHFWNAATGARVNTVDAGSQ---VTSLIWSPHSKEIMSTH 322 (401)
T ss_dssp -CCCEEEECTTSTTEEEEECC--------------TTTCEEEEEETTTCCEEEEEECSSC---EEEEEECSSSSEEEEEE
T ss_pred -eEEEEEECCCCCCEEEEecC--------------CCCCEEEEEECCCCCEEEEEeCCCc---EEEEEECCCCCeEEEEe
Confidence 2222222 34455554321 2468899999999999988875431 222223 345666643
Q ss_pred ecCCCcEEEEeCCCCcEeEEEecC--CceecceEE-eCCE-EEEEeCceeEeecCCccCCCCCeE
Q 040693 317 TYRQGPIYAMDVKTGKILWSYDTG--ATIYGGASV-SNGC-IYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 317 ~~~~g~l~~ld~~tG~ilw~~~~~--~~~~~~p~~-~~g~-lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
...++.|..+|..+++..-..... ......... .+++ |+.++.+|. +.+|.+.. ++.+
T Consensus 323 g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~-i~iw~~~~--~~~~ 384 (401)
T 4aez_A 323 GFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN-LKFWRVYD--GDHV 384 (401)
T ss_dssp CTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE-EEEEECCC------
T ss_pred ecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc-EEEEECCC--Cccc
Confidence 224899999999987766554432 222222233 2454 444555544 56666543 5544
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.1e-05 Score=74.27 Aligned_cols=225 Identities=8% Similarity=-0.014 Sum_probs=133.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++++.+-+....... + ....+.+++..++.+..+
T Consensus 34 dg~v~lWd~~~~~~~~~~~~~~~~-----------v--~~~~~~~~~~~l~s~s~d------------------------ 76 (304)
T 2ynn_A 34 SGRVELWNYETQVEVRSIQVTETP-----------V--RAGKFIARKNWIIVGSDD------------------------ 76 (304)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSC-----------E--EEEEEEGGGTEEEEEETT------------------------
T ss_pred CCcEEEEECCCCceeEEeeccCCc-----------E--EEEEEeCCCCEEEEECCC------------------------
Confidence 899999999999988776642111 0 123455566677766543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+|+.+..+......+.. ..+.++ +..++++..
T Consensus 77 ---------~~i~vwd~~~~~~~~~~~~h~~~v~~---------------------------~~~~~~---~~~l~sgs~ 117 (304)
T 2ynn_A 77 ---------FRIRVFNYNTGEKVVDFEAHPDYIRS---------------------------IAVHPT---KPYVLSGSD 117 (304)
T ss_dssp ---------SEEEEEETTTCCEEEEEECCSSCEEE---------------------------EEECSS---SSEEEEEET
T ss_pred ---------CEEEEEECCCCcEEEEEeCCCCcEEE---------------------------EEEcCC---CCEEEEECC
Confidence 89999999999999887654332110 111112 467888899
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
|+.+..+|..++..+-..-.+- ......... ++..+..+ ..++.|..+|..+++..
T Consensus 118 D~~v~lWd~~~~~~~~~~~~~h----~~~v~~v~~~p~~~~~l~sg-----------------s~D~~v~iwd~~~~~~~ 176 (304)
T 2ynn_A 118 DLTVKLWNWENNWALEQTFEGH----EHFVMCVAFNPKDPSTFASG-----------------CLDRTVKVWSLGQSTPN 176 (304)
T ss_dssp TSCEEEEEGGGTTEEEEEECCC----CSCEEEEEECTTCTTEEEEE-----------------ETTSEEEEEETTCSSCS
T ss_pred CCeEEEEECCCCcchhhhhccc----CCcEEEEEECCCCCCEEEEE-----------------eCCCeEEEEECCCCCcc
Confidence 9999999998875443221110 111222222 22344444 34588999999988877
Q ss_pred eeecCCCCCCCCcceEE----eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEee
Q 040693 291 WSTADPSNGTAPGPVTV----ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVG 365 (382)
Q Consensus 291 W~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~ 365 (382)
.+....... ....+.+ ++.+++.++ .++.|...|..+++.+..++........... .++.++++.+....+.
T Consensus 177 ~~~~~~~~~-~v~~~~~~~~~~~~~l~s~s--~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~ 253 (304)
T 2ynn_A 177 FTLTTGQER-GVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLK 253 (304)
T ss_dssp EEEECCCTT-CEEEEEECCSTTCCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEE
T ss_pred ceeccCCcC-cEEEEEEEEcCCCCEEEEEc--CCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEE
Confidence 666543211 1111111 234666666 4999999999999998887654333333333 3444444444334456
Q ss_pred cCCccCCCCCeEEEE
Q 040693 366 FGNKNFTSGTSLYAF 380 (382)
Q Consensus 366 ~~~~~~~~g~~l~~~ 380 (382)
+|.+ .+++.+..+
T Consensus 254 iWd~--~~~~~~~~~ 266 (304)
T 2ynn_A 254 IWNS--STYKVEKTL 266 (304)
T ss_dssp EEET--TTCCEEEEE
T ss_pred EEEC--CCCceeeec
Confidence 6654 456666544
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.7e-06 Score=78.34 Aligned_cols=189 Identities=12% Similarity=0.081 Sum_probs=122.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|.++|+........... .+ ....+.+++..++++..+
T Consensus 112 d~~v~lw~~~~~~~~~~~~~~~~~----------~v--~~v~~s~~~~~l~~~~~d------------------------ 155 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAETDEST----------YV--ASVKWSHDGSFLSVGLGN------------------------ 155 (401)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTC----------CE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEeeCCCCcEeEeeecCCCC----------CE--EEEEECCCCCEEEEECCC------------------------
Confidence 889999999999998877652111 01 235566676777777654
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++.+.++...... +..+.. .+..+++++.
T Consensus 156 ---------g~i~iwd~~~~~~~~~~~~~~~~-----------------------------v~~~~~---~~~~l~~~~~ 194 (401)
T 4aez_A 156 ---------GLVDIYDVESQTKLRTMAGHQAR-----------------------------VGCLSW---NRHVLSSGSR 194 (401)
T ss_dssp ---------SCEEEEETTTCCEEEEECCCSSC-----------------------------EEEEEE---ETTEEEEEET
T ss_pred ---------CeEEEEECcCCeEEEEecCCCCc-----------------------------eEEEEE---CCCEEEEEcC
Confidence 88999999999998877633221 111111 1468889999
Q ss_pred CcEEEEEeCCC-CCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 214 SGFAWALDRDS-GSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 214 ~g~l~ald~~t-G~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
++.+..+|..+ ++....+.... ........ ++..++++ ..++.|..+|.++++.+
T Consensus 195 dg~i~i~d~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~s~-----------------~~d~~v~iwd~~~~~~~ 252 (401)
T 4aez_A 195 SGAIHHHDVRIANHQIGTLQGHS-----SEVCGLAWRSDGLQLASG-----------------GNDNVVQIWDARSSIPK 252 (401)
T ss_dssp TSEEEEEETTSSSCEEEEEECCS-----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTCSSEE
T ss_pred CCCEEEEecccCcceeeEEcCCC-----CCeeEEEEcCCCCEEEEE-----------------eCCCeEEEccCCCCCcc
Confidence 99999999984 44455444221 12222222 45556555 34588999999999999
Q ss_pred eeecCCCCCCCCcceEEe--CCEEEE-eeecCCCcEEEEeCCCCcEeEEEecCCce
Q 040693 291 WSTADPSNGTAPGPVTVA--NGVLFG-GSTYRQGPIYAMDVKTGKILWSYDTGATI 343 (382)
Q Consensus 291 W~~~~~~~~~~~~~~~~~--~~~v~~-~~~~~~g~l~~ld~~tG~ilw~~~~~~~~ 343 (382)
.+....... ...+... +..+++ ++...++.|..+|..+++.+..++....+
T Consensus 253 ~~~~~~~~~--v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v 306 (401)
T 4aez_A 253 FTKTNHNAA--VKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQV 306 (401)
T ss_dssp EEECCCSSC--CCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCE
T ss_pred EEecCCcce--EEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcE
Confidence 887654321 2233332 333444 32114899999999999999998765543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=1e-05 Score=73.86 Aligned_cols=149 Identities=11% Similarity=-0.015 Sum_probs=86.3
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
+..++.+..|+.+..+|..+|+.............+ ....... ....+.+... ...+.|..
T Consensus 162 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~---------------~~~~~i~l 225 (318)
T 4ggc_A 162 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG-AVKAVAWCPWQSNVLATGGG---------------TSDRHIRI 225 (318)
T ss_dssp SSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCS-CEEEEEECTTSTTEEEEEEC---------------TTTCEEEE
T ss_pred CCEEEEEecCcceeEEECCCCcccccceeeecccCC-ceEEEEecCCCCcEEEEEec---------------CCCCEEEE
Confidence 467888889999999999998765443321110111 1111111 2333333322 34577889
Q ss_pred EECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCc
Q 040693 282 MDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGY 360 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~ 360 (382)
+|.++++.......... .........++.+++++...++.|+.+|..+++.+.+++-......+..+ .+++++++.+.
T Consensus 226 wd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~ 304 (318)
T 4ggc_A 226 WNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAA 304 (318)
T ss_dssp EETTTCCEEEEEECSSC-EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEET
T ss_pred Eecccccccccccceee-eeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEec
Confidence 99999988777665432 11111112345666655335899999999999999988643333333343 35555555444
Q ss_pred eeEeecCCcc
Q 040693 361 KVTVGFGNKN 370 (382)
Q Consensus 361 g~~~~~~~~~ 370 (382)
...+.+|.+.
T Consensus 305 D~~v~iWd~~ 314 (318)
T 4ggc_A 305 DETLRLWRCF 314 (318)
T ss_dssp TTEEEEECCS
T ss_pred CCeEEEEECC
Confidence 4556677654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-05 Score=76.89 Aligned_cols=221 Identities=12% Similarity=0.115 Sum_probs=121.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++++.+-...-.. ..+ .+..+.+++..++.+..+
T Consensus 144 d~~i~iwd~~~~~~~~~~~~h~-----------~~v--~~~~~~p~~~~l~s~s~d------------------------ 186 (393)
T 1erj_A 144 DRLIRIWDIENRKIVMILQGHE-----------QDI--YSLDYFPSGDKLVSGSGD------------------------ 186 (393)
T ss_dssp TSCEEEEETTTTEEEEEECCCS-----------SCE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEECCCCcEEEEEccCC-----------CCE--EEEEEcCCCCEEEEecCC------------------------
Confidence 8899999999998876543211 011 134556666677666543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+|+.......... .......... +..++++..
T Consensus 187 ---------~~v~iwd~~~~~~~~~~~~~~~----------------------------v~~~~~~~~~--~~~l~~~s~ 227 (393)
T 1erj_A 187 ---------RTVRIWDLRTGQCSLTLSIEDG----------------------------VTTVAVSPGD--GKYIAAGSL 227 (393)
T ss_dssp ---------SEEEEEETTTTEEEEEEECSSC----------------------------EEEEEECSTT--CCEEEEEET
T ss_pred ---------CcEEEEECCCCeeEEEEEcCCC----------------------------cEEEEEECCC--CCEEEEEcC
Confidence 8999999999998877754322 1111111111 467888889
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCC--Ccccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGG--GAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV 289 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g--~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~ 289 (382)
|+.+..+|..+|+.+-..........+ ........ ++..++.+ ..++.|..+|+++++.
T Consensus 228 d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-----------------s~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-----------------SLDRSVKLWNLQNANN 290 (393)
T ss_dssp TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEEC-----
T ss_pred CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEE-----------------eCCCEEEEEECCCCCC
Confidence 999999999999987766432211111 12222222 44555554 3457899999887654
Q ss_pred EeeecCCCC----------CCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEe-------
Q 040693 290 LWSTADPSN----------GTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVS------- 350 (382)
Q Consensus 290 ~W~~~~~~~----------~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~------- 350 (382)
......+.. ......+.. ++.+++.++ .++.|+..|.++|+.+..+........+..+.
T Consensus 291 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs--~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p 368 (393)
T 1erj_A 291 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGP 368 (393)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGGCEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCT
T ss_pred cccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEe--CCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCC
Confidence 322111100 000111222 234566666 48999999999999988776443322233332
Q ss_pred CCEEEEEeCceeEeecCCc
Q 040693 351 NGCIYMGNGYKVTVGFGNK 369 (382)
Q Consensus 351 ~g~lyv~~~~g~~~~~~~~ 369 (382)
++.++++.+....+.+|.+
T Consensus 369 ~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 369 EYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp TCEEEEEEETTSEEEEEEE
T ss_pred CCCEEEEECCCCcEEECcc
Confidence 3566665544344555554
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=6.8e-06 Score=79.30 Aligned_cols=216 Identities=11% Similarity=0.041 Sum_probs=127.1
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.+-+..-. ...+ .+..+.+++..++.+..
T Consensus 171 D~~i~iwd~~~~~~~~~~~~h-----------~~~V--~~v~~~p~~~~l~s~s~------------------------- 212 (410)
T 1vyh_C 171 DMTIKLWDFQGFECIRTMHGH-----------DHNV--SSVSIMPNGDHIVSASR------------------------- 212 (410)
T ss_dssp TSCCCEEETTSSCEEECCCCC-----------SSCE--EEEEECSSSSEEEEEET-------------------------
T ss_pred CCeEEEEeCCCCceeEEEcCC-----------CCCE--EEEEEeCCCCEEEEEeC-------------------------
Confidence 888999999888876554321 0111 23456666666666554
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
++.|..+|..+|+.+-.+......+ .......+ +..+++++.
T Consensus 213 --------D~~i~~wd~~~~~~~~~~~~h~~~v---------------------------~~~~~~~~---g~~l~s~s~ 254 (410)
T 1vyh_C 213 --------DKTIKMWEVQTGYCVKTFTGHREWV---------------------------RMVRPNQD---GTLIASCSN 254 (410)
T ss_dssp --------TSEEEEEETTTCCEEEEEECCSSCE---------------------------EEEEECTT---SSEEEEEET
T ss_pred --------CCeEEEEECCCCcEEEEEeCCCccE---------------------------EEEEECCC---CCEEEEEcC
Confidence 3899999999999887665432211 11111112 467888889
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccce------------------eeeCCeEEEEecCccccccccCCCCCCCC
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGA------------------ATDERRIYTNIANSQHKNFNLKPSKNSTI 275 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 275 (382)
|+.+..+|..+++..-.+...... .....+.+ ...+..++.+ ..
T Consensus 255 D~~v~vwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg-----------------s~ 316 (410)
T 1vyh_C 255 DQTVRVWVVATKECKAELREHRHV-VECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-----------------SR 316 (410)
T ss_dssp TSCEEEEETTTCCEEEEECCCSSC-EEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-----------------ET
T ss_pred CCeEEEEECCCCceeeEecCCCce-EEEEEEcCcccccchhhhccccccccCCCCCEEEEE-----------------eC
Confidence 999999999998876554321100 00000000 0013344444 34
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEe-CC
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVS-NG 352 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~-~g 352 (382)
++.|..+|.++|+.+.+...... ....+.+ ++.+++.++ .++.|...|.++++.+..+........+..+. ++
T Consensus 317 D~~i~iwd~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s--~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~ 392 (410)
T 1vyh_C 317 DKTIKMWDVSTGMCLMTLVGHDN--WVRGVLFHSGGKFILSCA--DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTA 392 (410)
T ss_dssp TSEEEEEETTTTEEEEEEECCSS--CEEEEEECSSSSCEEEEE--TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSS
T ss_pred CCeEEEEECCCCceEEEEECCCC--cEEEEEEcCCCCEEEEEe--CCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCC
Confidence 58899999999998887764432 1122333 234666666 48999999999999888776544434444442 34
Q ss_pred E-EEEEeCceeEeecCC
Q 040693 353 C-IYMGNGYKVTVGFGN 368 (382)
Q Consensus 353 ~-lyv~~~~g~~~~~~~ 368 (382)
. |..++.+|. +.+|.
T Consensus 393 ~~l~sgs~D~~-i~vW~ 408 (410)
T 1vyh_C 393 PYVVTGSVDQT-VKVWE 408 (410)
T ss_dssp SCEEEEETTSE-EEEEC
T ss_pred CEEEEEeCCCc-EEEEe
Confidence 4 444444544 45554
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-07 Score=85.08 Aligned_cols=223 Identities=9% Similarity=0.028 Sum_probs=123.3
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+|+.+-......... ...+ ....+.+++..++.+..+
T Consensus 114 dg~v~lWd~~~~~~~~~~~~~~~~h-------~~~V--~~v~~spdg~~l~sgs~d------------------------ 160 (357)
T 4g56_B 114 SGAVELWEILEKESLLVNKFAKYEH-------DDIV--KTLSVFSDGTQAVSGGKD------------------------ 160 (357)
T ss_dssp TSCEEEC--------CCCCEEECCC-------SSCE--EEEEECSSSSEEEEEETT------------------------
T ss_pred CCEEEEeeccccceeEEEeeccCCC-------CCCE--EEEEECCCCCEEEEEeCC------------------------
Confidence 7778888887777654433211100 0111 134566666666665543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++.+..++.....+. -..+..++ ...++.+..
T Consensus 161 ---------g~v~iwd~~~~~~~~~~~~h~~~v~---------------------------~v~~s~~~--~~~~~s~~~ 202 (357)
T 4g56_B 161 ---------FSVKVWDLSQKAVLKSYNAHSSEVN---------------------------CVAACPGK--DTIFLSCGE 202 (357)
T ss_dssp ---------SCEEEEETTTTEEEEEECCCSSCEE---------------------------EEEECTTC--SSCEEEEET
T ss_pred ---------CeEEEEECCCCcEEEEEcCCCCCEE---------------------------EEEEccCC--Cceeeeecc
Confidence 8899999999999988865433211 01111222 456777888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
|+.+..+|..+++..-....... ......... +++.+++.. ..++.|..+|+++++.+.
T Consensus 203 dg~v~~wd~~~~~~~~~~~~~~~---~~~v~~v~~sp~~~~~la~g----------------~~d~~i~~wd~~~~~~~~ 263 (357)
T 4g56_B 203 DGRILLWDTRKPKPATRIDFCAS---DTIPTSVTWHPEKDDTFACG----------------DETGNVSLVNIKNPDSAQ 263 (357)
T ss_dssp TSCEEECCTTSSSCBCBCCCTTC---CSCEEEEEECTTSTTEEEEE----------------ESSSCEEEEESSCGGGCE
T ss_pred CCceEEEECCCCceeeeeeeccc---cccccchhhhhcccceEEEe----------------ecccceeEEECCCCcEeE
Confidence 99999999999987766553321 111122222 334444331 345789999999999887
Q ss_pred eecCCCCCCCCcceEE--eCC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeec
Q 040693 292 STADPSNGTAPGPVTV--ANG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGF 366 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~--~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~ 366 (382)
+....... ...+.+ +++ ++..++ .++.|..+|.++++++........ ..+.+. .+++++++.+....+.+
T Consensus 264 ~~~~~~~~--v~~l~~sp~~~~~lasgs--~D~~i~iwd~~~~~~~~~~~H~~~-V~~vafsP~d~~~l~s~s~Dg~v~i 338 (357)
T 4g56_B 264 TSAVHSQN--ITGLAYSYHSSPFLASIS--EDCTVAVLDADFSEVFRDLSHRDF-VTGVAWSPLDHSKFTTVGWDHKVLH 338 (357)
T ss_dssp EECCCSSC--EEEEEECSSSSCCEEEEE--TTSCEEEECTTSCEEEEECCCSSC-EEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEecccee--EEEEEEcCCCCCEEEEEe--CCCEEEEEECCCCcEeEECCCCCC-EEEEEEeCCCCCEEEEEcCCCeEEE
Confidence 77654321 122333 233 444455 489999999999998876533222 233333 35666665444344667
Q ss_pred CCccC
Q 040693 367 GNKNF 371 (382)
Q Consensus 367 ~~~~~ 371 (382)
|.+..
T Consensus 339 W~~~~ 343 (357)
T 4g56_B 339 HHLPS 343 (357)
T ss_dssp EECC-
T ss_pred EECCC
Confidence 76643
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.62 E-value=2.5e-05 Score=74.20 Aligned_cols=278 Identities=14% Similarity=0.089 Sum_probs=146.5
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|.+||+++=+.+.+..+ .+..+| .+..+|++......... -..++.|..||.++++++-+..+.+....
T Consensus 36 ~D~~t~~~~~~i~~g~~p--~i~~sp--dg~~lyv~~~~~~~~~~----g~~~~~v~v~d~~t~~~~~~i~~~~~~~~-- 105 (361)
T 2oiz_A 36 YDYTNGKFLGMVPTAFNG--HVQVSN--DGKKIYTMTTYHERITR----GKRSDVVEVWDADKLTFEKEISLPPKRVQ-- 105 (361)
T ss_dssp EETTTCCEEEEEECCEEE--EEEECT--TSSEEEEEEEEETTSSS----SCEEEEEEEEETTTCCEEEEEEECTTBCC--
T ss_pred EECCCCeEEEEecCCCCC--ceEECC--CCCEEEEEEeccccccc----CCCCCEEEEEECcCCcEEEEEEcCccccc--
Confidence 577788876544432211 111111 24678887521000000 00156799999999999988876422110
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEE-Ee
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWY-KQ 160 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~-~~ 160 (382)
.|... ....+++++.++|++... ..+.|..+|.++++++-+ .+
T Consensus 106 ---~g~~p--~~i~~spdg~~l~v~n~~-------------------------------~~~~v~v~d~~~~~~~~~~i~ 149 (361)
T 2oiz_A 106 ---GLNYD--GLFRQTTDGKFIVLQNAS-------------------------------PATSIGIVDVAKGDYVEDVTA 149 (361)
T ss_dssp ---BCCCG--GGEEECTTSSEEEEEEES-------------------------------SSEEEEEEETTTTEEEEEEGG
T ss_pred ---cCCCc--ceEEECCCCCEEEEECCC-------------------------------CCCeEEEEECCCCcEEEEEec
Confidence 01111 246788888999997532 127899999999998765 44
Q ss_pred cCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCC-CCeeeeeccCCCC-C
Q 040693 161 LGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDS-GSLIWSMEAGPGG-L 238 (382)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~t-G~~~W~~~~~~~~-~ 238 (382)
.... + ++. ...++ ...++....+|.+..++.++ |+..+........ .
T Consensus 150 ~~~~--~-------------------------~v~--~~p~~--~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~ 198 (361)
T 2oiz_A 150 AAGC--W-------------------------SVI--PQPNR--PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV 198 (361)
T ss_dssp GTTE--E-------------------------EEE--ECTTS--SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT
T ss_pred CCCc--c-------------------------eeE--EcCCC--CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC
Confidence 3221 0 000 01111 12344555566666666543 6666433210000 0
Q ss_pred CCCccc-ceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE----eeecC------CCCCCCCcceEE
Q 040693 239 GGGAMW-GAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL----WSTAD------PSNGTAPGPVTV 307 (382)
Q Consensus 239 ~g~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~----W~~~~------~~~~~~~~~~~~ 307 (382)
.....+ ...-++..+++. ...+.++.+|..+++.. |.... ...+.....+.+
T Consensus 199 ~~~~~~~~~~~~g~~~~~~-----------------~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~ 261 (361)
T 2oiz_A 199 KDDPIFIAPALDKDKAHFV-----------------SYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL 261 (361)
T ss_dssp TTSCBCSCCEECSSEEEEE-----------------BTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred CCCceEEEecccCCEEEEE-----------------eCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence 001111 111234444444 23467999998776532 33211 000000111333
Q ss_pred --eCCEEEEeee-c--------CCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCCccCCCC
Q 040693 308 --ANGVLFGGST-Y--------RQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSG 374 (382)
Q Consensus 308 --~~~~v~~~~~-~--------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g 374 (382)
+++++|+... . ..+.|..+|.++++++-+++.+. -.+..+ .+.+||+++. +. + .-+|..+|
T Consensus 262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~-v--~v~D~~t~ 335 (361)
T 2oiz_A 262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN-V--NVYDISQP 335 (361)
T ss_dssp ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SC-E--EEEECSSS
T ss_pred ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce-E--EEEECCCC
Confidence 3578998752 0 13479999999999999998876 333333 4567888775 33 3 33588888
Q ss_pred --CeEEE
Q 040693 375 --TSLYA 379 (382)
Q Consensus 375 --~~l~~ 379 (382)
+.+-.
T Consensus 336 ~l~~~~~ 342 (361)
T 2oiz_A 336 EPKLLRT 342 (361)
T ss_dssp SCEEEEE
T ss_pred cceeeEE
Confidence 76643
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.61 E-value=5.4e-06 Score=78.58 Aligned_cols=111 Identities=11% Similarity=0.072 Sum_probs=75.2
Q ss_pred EEEEEccCcEEEEEeCCCCCeeeeeccCCCC-CCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCC---ceEE
Q 040693 207 IVVAVQKSGFAWALDRDSGSLIWSMEAGPGG-LGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIA---GGWV 280 (382)
Q Consensus 207 ~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~---g~v~ 280 (382)
.++++..++.+..+|..+++.+..+.....- ........... ++..++++ ..+ +.|.
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~-----------------~~d~~~g~i~ 261 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA-----------------HDSNSFGCIT 261 (397)
T ss_dssp EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEE-----------------EEETTEEEEE
T ss_pred eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEE-----------------ecCCCCceEE
Confidence 7888899999999999999999888751000 00112222222 45555554 334 7899
Q ss_pred EEECCCCcEEeeecC-------------CCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 281 AMDASNGNVLWSTAD-------------PSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 281 a~d~~tG~~~W~~~~-------------~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
.+|.++++.+.+... ... ....+.+ ++.+++.++ .++.|..+|..+++.+.++.
T Consensus 262 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~ 330 (397)
T 1sq9_A 262 LYETEFGERIGSLSVPTHSSQASLGEFAHSS--WVMSLSFNDSGETLCSAG--WDGKLRFWDVKTKERITTLN 330 (397)
T ss_dssp EEETTTCCEEEEECBC--------CCBSBSS--CEEEEEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEE
T ss_pred EEECCCCcccceeccCcccccccccccccCC--cEEEEEECCCCCEEEEEe--CCCeEEEEEcCCCceeEEEe
Confidence 999999999988775 221 1122223 245666666 48999999999999999988
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-05 Score=76.86 Aligned_cols=148 Identities=11% Similarity=-0.014 Sum_probs=88.1
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
+..+..+..|+.+..+|..+++..+.......... ........ ....+.+... ..++.|..
T Consensus 242 g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~-~~V~~~~~~p~~~~~la~~~g---------------s~D~~I~i 305 (420)
T 4gga_A 242 GRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ-GAVKAVAWCPWQSNVLATGGG---------------TSDRHIRI 305 (420)
T ss_dssp SSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCS-SCEEEEEECTTCTTEEEEEEC---------------TTTCEEEE
T ss_pred CCeeeeeeccccceEEeeccccccceeeeeecccC-CceeeeeeCCCcccEEEEEee---------------cCCCEEEE
Confidence 46778888899999999998875433211100000 11111111 2333333322 34588999
Q ss_pred EECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEe
Q 040693 282 MDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGN 358 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~ 358 (382)
+|..+|+.......... ...+.. .++.+++++...++.|+.+|..+++.+.++.-......+..+ .+++++++.
T Consensus 306 wd~~t~~~~~~~~~~~~---v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~ 382 (420)
T 4gga_A 306 WNVCSGACLSAVDAHSQ---VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA 382 (420)
T ss_dssp EETTTTEEEEEEECSSC---EEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred EeCCccccceeeccccc---eeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence 99999999988876542 122222 345666665335799999999999999988643333333333 356656655
Q ss_pred CceeEeecCCccC
Q 040693 359 GYKVTVGFGNKNF 371 (382)
Q Consensus 359 ~~g~~~~~~~~~~ 371 (382)
+....+.+|.+..
T Consensus 383 s~D~tvriWdv~~ 395 (420)
T 4gga_A 383 AADETLRLWRCFE 395 (420)
T ss_dssp ETTTEEEEECCSC
T ss_pred ecCCeEEEEECCC
Confidence 5445577887653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-05 Score=83.74 Aligned_cols=223 Identities=9% Similarity=-0.002 Sum_probs=139.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+|.|..+|..+|+.+.+....... + ....+.+++..++++..+
T Consensus 34 ~g~v~iwd~~~~~~~~~~~~~~~~-----------v--~~~~~s~~~~~l~~~~~d------------------------ 76 (814)
T 3mkq_A 34 SGRVEIWNYETQVEVRSIQVTETP-----------V--RAGKFIARKNWIIVGSDD------------------------ 76 (814)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSC-----------E--EEEEEEGGGTEEEEEETT------------------------
T ss_pred CCEEEEEECCCCceEEEEecCCCc-----------E--EEEEEeCCCCEEEEEeCC------------------------
Confidence 889999999999998887642111 1 235677777777776654
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+|+.+.+.......+. -.....+ +..|++++.
T Consensus 77 ---------g~i~vw~~~~~~~~~~~~~~~~~v~---------------------------~~~~s~~---~~~l~~~~~ 117 (814)
T 3mkq_A 77 ---------FRIRVFNYNTGEKVVDFEAHPDYIR---------------------------SIAVHPT---KPYVLSGSD 117 (814)
T ss_dssp ---------SEEEEEETTTCCEEEEEECCSSCEE---------------------------EEEECSS---SSEEEEEET
T ss_pred ---------CeEEEEECCCCcEEEEEecCCCCEE---------------------------EEEEeCC---CCEEEEEcC
Confidence 8999999999999988865433211 1112222 356778888
Q ss_pred CcEEEEEeCCCCCee-eeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE
Q 040693 214 SGFAWALDRDSGSLI-WSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV 289 (382)
Q Consensus 214 ~g~l~ald~~tG~~~-W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~ 289 (382)
++.+..+|..++... -...... ........ ++..++++ ..++.|..+|..+++.
T Consensus 118 dg~i~vw~~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~-----------------~~dg~v~vwd~~~~~~ 175 (814)
T 3mkq_A 118 DLTVKLWNWENNWALEQTFEGHE-----HFVMCVAFNPKDPSTFASG-----------------CLDRTVKVWSLGQSTP 175 (814)
T ss_dssp TSEEEEEEGGGTSEEEEEEECCS-----SCEEEEEEETTEEEEEEEE-----------------ETTSEEEEEETTCSSC
T ss_pred CCEEEEEECCCCceEEEEEcCCC-----CcEEEEEEEcCCCCEEEEE-----------------eCCCeEEEEECCCCcc
Confidence 999999999887333 2222111 12222222 23345444 3458899999999998
Q ss_pred EeeecCCCCCCCCcceEE----eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCC-EEEEEeCceeE
Q 040693 290 LWSTADPSNGTAPGPVTV----ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNG-CIYMGNGYKVT 363 (382)
Q Consensus 290 ~W~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g-~lyv~~~~g~~ 363 (382)
.......... ....+.. ++..++.++ .++.|..+|..+++.+..+............ .++ .|++++.+|.
T Consensus 176 ~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~- 251 (814)
T 3mkq_A 176 NFTLTTGQER-GVNYVDYYPLPDKPYMITAS--DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT- 251 (814)
T ss_dssp SEEEECCCTT-CCCEEEECCSTTCCEEEEEC--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-
T ss_pred eeEEecCCCC-CEEEEEEEECCCCCEEEEEe--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-
Confidence 8887654311 1222222 345666666 4899999999999998888754433333333 234 4555555655
Q ss_pred eecCCccCCCCCeEEEE
Q 040693 364 VGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 364 ~~~~~~~~~~g~~l~~~ 380 (382)
+.+| +..+++.+..+
T Consensus 252 v~vw--d~~~~~~~~~~ 266 (814)
T 3mkq_A 252 LKIW--NSSTYKVEKTL 266 (814)
T ss_dssp EEEE--ETTTCSEEEEE
T ss_pred EEEE--ECCCCcEEEEe
Confidence 3444 45557776655
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-05 Score=74.20 Aligned_cols=223 Identities=9% Similarity=-0.005 Sum_probs=126.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeC-CCCeEEEEcCCCCCCCcchhhcccccCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDP-IRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSP 132 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (382)
++.|..+|..+++.+.+....... + ....+.+ ++..++.+..+
T Consensus 94 dg~i~v~d~~~~~~~~~~~~~~~~-----------i--~~~~~~~~~~~~l~s~~~d----------------------- 137 (366)
T 3k26_A 94 RGIIRIINPITMQCIKHYVGHGNA-----------I--NELKFHPRDPNLLLSVSKD----------------------- 137 (366)
T ss_dssp TCEEEEECTTTCCEEEEEESCCSC-----------E--EEEEECSSCTTEEEEEETT-----------------------
T ss_pred CCEEEEEEchhceEeeeecCCCCc-----------E--EEEEECCCCCCEEEEEeCC-----------------------
Confidence 899999999999998887632110 1 1345555 45566665543
Q ss_pred CCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc
Q 040693 133 DKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ 212 (382)
Q Consensus 133 ~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~ 212 (382)
+.|..+|..+++.+..+...... .....-.....+ +..++++.
T Consensus 138 ----------g~i~iwd~~~~~~~~~~~~~~~~------------------------~~~v~~~~~~~~---~~~l~~~~ 180 (366)
T 3k26_A 138 ----------HALRLWNIQTDTLVAIFGGVEGH------------------------RDEVLSADYDLL---GEKIMSCG 180 (366)
T ss_dssp ----------SCEEEEETTTTEEEEEECSTTSC------------------------SSCEEEEEECTT---SSEEEEEE
T ss_pred ----------CeEEEEEeecCeEEEEecccccc------------------------cCceeEEEECCC---CCEEEEec
Confidence 88999999999988877431110 011111122222 46788888
Q ss_pred cCcEEEEEeCCCCCeeeeeccC----CC-------------------CCCCCcccceeeeCCeEEEEecCccccccccCC
Q 040693 213 KSGFAWALDRDSGSLIWSMEAG----PG-------------------GLGGGAMWGAATDERRIYTNIANSQHKNFNLKP 269 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~----~~-------------------~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 269 (382)
.++.+..+|..+++.+-.+... +. .............++.++.+
T Consensus 181 ~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~------------- 247 (366)
T 3k26_A 181 MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSK------------- 247 (366)
T ss_dssp TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEE-------------
T ss_pred CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEE-------------
Confidence 8999999999988766443310 00 00111122222235555554
Q ss_pred CCCCCCCceEEEEECCCCcE--------------EeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcE
Q 040693 270 SKNSTIAGGWVAMDASNGNV--------------LWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 270 ~~~~~~~g~v~a~d~~tG~~--------------~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
..++.|..+|..+++. +.+..........-....+ +.+++.++ .+|.|+.+|..+++.
T Consensus 248 ----~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~--~dg~i~vwd~~~~~~ 321 (366)
T 3k26_A 248 ----SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGN--QVGKLYVWDLEVEDP 321 (366)
T ss_dssp ----CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEEC--TTSCEEEEECCSSSG
T ss_pred ----ecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEe--cCCcEEEEECCCCCC
Confidence 4468899999988854 4444333322223333334 56777776 489999999999875
Q ss_pred eE----EEecC--CceecceEE-eCCE-EEEEeCceeEeecCCc
Q 040693 334 LW----SYDTG--ATIYGGASV-SNGC-IYMGNGYKVTVGFGNK 369 (382)
Q Consensus 334 lw----~~~~~--~~~~~~p~~-~~g~-lyv~~~~g~~~~~~~~ 369 (382)
+. .+... ......... .+++ |+.++.+|. +.+|.+
T Consensus 322 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~ 364 (366)
T 3k26_A 322 HKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS-IWRWDR 364 (366)
T ss_dssp GGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEEC
T ss_pred ccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE-EEEEEe
Confidence 43 33332 122223333 2444 444555544 445543
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.6e-05 Score=72.96 Aligned_cols=167 Identities=13% Similarity=0.014 Sum_probs=102.1
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+|+.+-.+......+. -..+.++ +..++++..|+.+..+|
T Consensus 163 d~~i~~wd~~~~~~~~~~~~h~~~v~---------------------------~~~~~~~---~~~l~sg~~d~~v~~wd 212 (340)
T 1got_B 163 DTTCALWDIETGQQTTTFTGHTGDVM---------------------------SLSLAPD---TRLFVSGACDASAKLWD 212 (340)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEE---------------------------EEEECTT---SSEEEEEETTSCEEEEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCceE---------------------------EEEECCC---CCEEEEEeCCCcEEEEE
Confidence 38899999999998876653322111 1112222 35788888999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
..+++.+..+..-. ........ ++..++.+ ..++.|..+|.++++.+.........
T Consensus 213 ~~~~~~~~~~~~h~-----~~v~~v~~~p~~~~l~s~-----------------s~d~~v~iwd~~~~~~~~~~~~~~~~ 270 (340)
T 1got_B 213 VREGMCRQTFTGHE-----SDINAICFFPNGNAFATG-----------------SDDATCRLFDLRADQELMTYSHDNII 270 (340)
T ss_dssp TTTCSEEEEECCCS-----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred CCCCeeEEEEcCCc-----CCEEEEEEcCCCCEEEEE-----------------cCCCcEEEEECCCCcEEEEEccCCcc
Confidence 99998887765321 11222222 44555554 34588999999999988777643311
Q ss_pred CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEE-EeCcee
Q 040693 300 TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYM-GNGYKV 362 (382)
Q Consensus 300 ~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv-~~~~g~ 362 (382)
.....+.+ ++.+++.++ .++.|..+|..+++.+-.+...........+ .++++++ ++.+|.
T Consensus 271 ~~v~~~~~s~~g~~l~~g~--~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 271 CGITSVSFSKSGRLLLAGY--DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335 (340)
T ss_dssp SCEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred cceEEEEECCCCCEEEEEC--CCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence 11122223 245666666 4899999999999988777643333333333 3454444 444433
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.6e-05 Score=75.89 Aligned_cols=197 Identities=11% Similarity=-0.035 Sum_probs=112.1
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.+.++..... .+ ....+.+++..++.+..+
T Consensus 160 d~~i~iwd~~~~~~~~~~~~h~~-----------~v--~~~~~~~~~~~l~s~~~d------------------------ 202 (420)
T 3vl1_A 160 DMQLKIWSVKDGSNPRTLIGHRA-----------TV--TDIAIIDRGRNVLSASLD------------------------ 202 (420)
T ss_dssp TSEEEEEETTTCCCCEEEECCSS-----------CE--EEEEEETTTTEEEEEETT------------------------
T ss_pred CCeEEEEeCCCCcCceEEcCCCC-----------cE--EEEEEcCCCCEEEEEcCC------------------------
Confidence 88999999999998876643111 11 235667776777766543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCC-----CCCCCCCCCCCceEEEeeeCceeecEE
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPP-----GPSPDADFGEAPMMLSMYRNKVKHDIV 208 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~g~~~~~v 208 (382)
+.|..+|..+|+.+..+.......-...+..+. |.... ...+...+.-+ . .+..|
T Consensus 203 ---------~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~~~~s-------~---~~~~l 262 (420)
T 3vl1_A 203 ---------GTIRLWECGTGTTIHTFNRKENPHDGVNSIALF-VGTDRQLHEISTSKKNNLEFG-------T---YGKYV 262 (420)
T ss_dssp ---------SCEEEEETTTTEEEEEECBTTBTTCCEEEEEEE-ECCCSSCGGGCCCCCCTTCSS-------C---TTEEE
T ss_pred ---------CcEEEeECCCCceeEEeecCCCCCCCccEEEEe-cCCcceeeecccCcccceEEc-------C---CCCEE
Confidence 889999999999999887543210000000000 00000 00000000001 1 14577
Q ss_pred EEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCC-eEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 209 VAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DER-RIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 209 ~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~-~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
+++..++.+..+|..+++.......... ........ ++. .++.+ ..++.|..+|.+
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~g-----------------~~dg~i~vwd~~ 321 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLPSKFT----CSCNSLTVDGNNANYIYAG-----------------YENGMLAQWDLR 321 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCTTS----SCEEEEEECSSCTTEEEEE-----------------ETTSEEEEEETT
T ss_pred EEEcCCCeEEEEECCCCceeEEcccccC----CCceeEEEeCCCCCEEEEE-----------------eCCCeEEEEEcC
Confidence 8888999999999999998888754211 12222222 344 56665 345889999999
Q ss_pred CCcE-EeeecCCCCCCCCcceEEeCC-EEEEeeecCCCcEEEEeCCCC
Q 040693 286 NGNV-LWSTADPSNGTAPGPVTVANG-VLFGGSTYRQGPIYAMDVKTG 331 (382)
Q Consensus 286 tG~~-~W~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~g~l~~ld~~tG 331 (382)
+++. +-+....... ....+...++ +++.++ .++.|...|..+.
T Consensus 322 ~~~~~~~~~~~~~~~-~v~~~~~~~~~~l~s~~--~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 322 SPECPVGEFLINEGT-PINNVYFAAGALFVSSG--FDTSIKLDIISDP 366 (420)
T ss_dssp CTTSCSEEEEESTTS-CEEEEEEETTEEEEEET--TTEEEEEEEECCT
T ss_pred CCcCchhhhhccCCC-CceEEEeCCCCEEEEec--CCccEEEEeccCC
Confidence 9854 4444432211 1222334445 444444 4888999987763
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-05 Score=79.52 Aligned_cols=149 Identities=14% Similarity=0.036 Sum_probs=94.3
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--e-CCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--D-ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
..++++..++.+..+|..+++.+..+..... .+........ + +..++++ ..++.|..+
T Consensus 174 ~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~-----------------~~dg~i~vw 234 (615)
T 1pgu_A 174 MRSMTVGDDGSVVFYQGPPFKFSASDRTHHK--QGSFVRDVEFSPDSGEFVITV-----------------GSDRKISCF 234 (615)
T ss_dssp CEEEEEETTTEEEEEETTTBEEEEEECSSSC--TTCCEEEEEECSTTCCEEEEE-----------------ETTCCEEEE
T ss_pred cEEEEEeCCCcEEEEeCCCcceeeeecccCC--CCceEEEEEECCCCCCEEEEE-----------------eCCCeEEEE
Confidence 3788888999999999999998887763221 0002222222 4 4556655 345889999
Q ss_pred ECCCCcEEeee-c---CCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-----ceecceEEeCC
Q 040693 283 DASNGNVLWST-A---DPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-----TIYGGASVSNG 352 (382)
Q Consensus 283 d~~tG~~~W~~-~---~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-----~~~~~p~~~~g 352 (382)
|.++++.+.+. . ..... ...+.+ ++..++.++ .++.|..+|..+++.+.++.... .........++
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (615)
T 1pgu_A 235 DGKSGEFLKYIEDDQEPVQGG--IFALSWLDSQKFATVG--ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 310 (615)
T ss_dssp ETTTCCEEEECCBTTBCCCSC--EEEEEESSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETT
T ss_pred ECCCCCEeEEecccccccCCc--eEEEEEcCCCEEEEEc--CCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCCC
Confidence 99999999887 3 22211 122222 456777766 48999999999999999988762 11111122667
Q ss_pred EEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 353 CIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.+++++.+|. +.+|. ..+++.+..+
T Consensus 311 ~l~~~~~~g~-i~~~d--~~~~~~~~~~ 335 (615)
T 1pgu_A 311 RIISLSLDGT-LNFYE--LGHDEVLKTI 335 (615)
T ss_dssp EEEEEETTSC-EEEEE--TTEEEEEEEE
T ss_pred eEEEEECCCC-EEEEE--CCCCcEEEEE
Confidence 7777777765 33443 4445555443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=9.5e-05 Score=68.90 Aligned_cols=233 Identities=14% Similarity=0.108 Sum_probs=127.6
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|.++|+++-.... .....| ...++++++. +|++...
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~--~~~~~p----------~gia~d~~g~-l~v~d~~------------------------ 110 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGK--NLFYLP----------HGLSIDTDGN-YWVTDVA------------------------ 110 (329)
T ss_dssp SCCEEEECTTTCCEEEEECT--TTCSSE----------EEEEECTTSC-EEEEETT------------------------
T ss_pred CCcEEEEECCCCeEEeccCC--CccCCc----------eEEEECCCCC-EEEEECC------------------------
Confidence 35799999999998754321 111000 1246776544 7776542
Q ss_pred CCCCCCCCcceEEEEECCCCc--EEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE
Q 040693 134 KCIEPENHSNSLLALDLDTGK--IVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~ 211 (382)
.+.|+.+|+. |+ .+..+........ ..+....|.=..+..++ +.++++.
T Consensus 111 --------~~~v~~~~~~-g~~~~~~~~~~~~~~g~------------------~~~~~~~P~~ia~~~~~--g~lyv~d 161 (329)
T 3fvz_A 111 --------LHQVFKLDPH-SKEGPLLILGRSMQPGS------------------DQNHFCQPTDVAVEPST--GAVFVSD 161 (329)
T ss_dssp --------TTEEEEECTT-CSSCCSEEESBTTBCCC------------------STTCCSSEEEEEECTTT--CCEEEEE
T ss_pred --------CCEEEEEeCC-CCeEEEEEecccCCCCC------------------CccccCCCcEEEEeCCC--CeEEEEe
Confidence 2789999974 66 5555532211000 00011234333332211 3344444
Q ss_pred c-cCcEEEEEeCCCCCeeeeeccCCCCC---CC--Ccccceeee--CCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 212 Q-KSGFAWALDRDSGSLIWSMEAGPGGL---GG--GAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 212 ~-~~g~l~ald~~tG~~~W~~~~~~~~~---~g--~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
. .++.+..+| .+|+.++.+....... .+ ....+.+++ ++.+|++.. ..++|..+|
T Consensus 162 ~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~----------------~~~~I~~~~ 224 (329)
T 3fvz_A 162 GYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR----------------ENGRIQCFK 224 (329)
T ss_dssp CSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET----------------TTTEEEEEE
T ss_pred CCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC----------------CCCEEEEEE
Confidence 3 478999999 5699888775321100 00 012333443 488998742 357899999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEeCCEEEEeee------cCCCcEEEEeCCCCcEeEEEecCCceecc---eEE-eCCE
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVANGVLFGGST------YRQGPIYAMDVKTGKILWSYDTGATIYGG---ASV-SNGC 353 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~------~~~g~l~~ld~~tG~ilw~~~~~~~~~~~---p~~-~~g~ 353 (382)
+.+|+.+.++..+........+.+..+.+|.... .....++.+|..+|+++..+......... .++ .+|.
T Consensus 225 ~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~ 304 (329)
T 3fvz_A 225 TDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT 304 (329)
T ss_dssp TTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE
T ss_pred CCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC
Confidence 9999999887644311111112222344444431 13458999999999999887533222222 233 4679
Q ss_pred EEEEeCceeEeecCCc
Q 040693 354 IYMGNGYKVTVGFGNK 369 (382)
Q Consensus 354 lyv~~~~g~~~~~~~~ 369 (382)
|||+......+..|.+
T Consensus 305 lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 305 VYIGDAHTNTVWKFTL 320 (329)
T ss_dssp EEEEESSSCCEEEEEE
T ss_pred EEEEECCCCEEEEEeC
Confidence 9999876554444443
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.50 E-value=1.7e-05 Score=74.08 Aligned_cols=221 Identities=5% Similarity=-0.062 Sum_probs=130.8
Q ss_pred cceEEEEeCccCc--eeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCC
Q 040693 54 QGSLAKLDAKTGR--ILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTS 131 (382)
Q Consensus 54 ~g~l~ald~~tG~--~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
++.|+.+|.++++ .+-++..... .+ ....+.+++..++.+..+
T Consensus 29 d~~v~i~~~~~~~~~~~~~~~~h~~-----------~v--~~~~~~~~~~~l~~~~~d---------------------- 73 (372)
T 1k8k_C 29 NHEVHIYEKSGNKWVQVHELKEHNG-----------QV--TGVDWAPDSNRIVTCGTD---------------------- 73 (372)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCSS-----------CE--EEEEEETTTTEEEEEETT----------------------
T ss_pred CCEEEEEeCCCCcEEeeeeecCCCC-----------cc--cEEEEeCCCCEEEEEcCC----------------------
Confidence 8899999999997 5555542111 11 135566666677776543
Q ss_pred CCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE
Q 040693 132 PDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211 (382)
Q Consensus 132 ~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~ 211 (382)
+.|..+|..+++..-........ ....-..+..+ +..++++
T Consensus 74 -----------g~i~vwd~~~~~~~~~~~~~~~~-------------------------~~v~~~~~~~~---~~~l~~~ 114 (372)
T 1k8k_C 74 -----------RNAYVWTLKGRTWKPTLVILRIN-------------------------RAARCVRWAPN---EKKFAVG 114 (372)
T ss_dssp -----------SCEEEEEEETTEEEEEEECCCCS-------------------------SCEEEEEECTT---SSEEEEE
T ss_pred -----------CeEEEEECCCCeeeeeEEeecCC-------------------------CceeEEEECCC---CCEEEEE
Confidence 78999999888866665543321 11111222222 4678888
Q ss_pred ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEEC-----
Q 040693 212 QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA----- 284 (382)
Q Consensus 212 ~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~----- 284 (382)
..++.+..+|..+++..+....-.. ........... ++..++++ ..++.|..+|.
T Consensus 115 ~~d~~v~i~d~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~-----------------~~dg~i~~~d~~~~~~ 176 (372)
T 1k8k_C 115 SGSRVISICYFEQENDWWVCKHIKK-PIRSTVLSLDWHPNSVLLAAG-----------------SCDFKCRIFSAYIKEV 176 (372)
T ss_dssp ETTSSEEEEEEETTTTEEEEEEECT-TCCSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEECCCTTT
T ss_pred eCCCEEEEEEecCCCcceeeeeeec-ccCCCeeEEEEcCCCCEEEEE-----------------cCCCCEEEEEcccccc
Confidence 8899999988888775443321110 00111222222 44555554 34578888994
Q ss_pred -------------CCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE
Q 040693 285 -------------SNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV 349 (382)
Q Consensus 285 -------------~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~ 349 (382)
.+++.+-+...... ....+.+ ++..++.++ .++.|..+|..+++.+.++............
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~ 252 (372)
T 1k8k_C 177 EERPAPTPWGSKMPFGELMFESSSSCG--WVHGVCFSANGSRVAWVS--HDSTVCLADADKKMAVATLASETLPLLAVTF 252 (372)
T ss_dssp SCCCCCBTTBSCCCTTCEEEECCCCSS--CEEEEEECSSSSEEEEEE--TTTEEEEEEGGGTTEEEEEECSSCCEEEEEE
T ss_pred cccccccccccccchhhheEecCCCCC--eEEEEEECCCCCEEEEEe--CCCEEEEEECCCCceeEEEccCCCCeEEEEE
Confidence 46777766653321 1122223 345777776 4899999999999999988765433333333
Q ss_pred -eCCEEEEEeCceeEeecCCccC
Q 040693 350 -SNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 350 -~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
.+++++++..++. +.+|.++.
T Consensus 253 ~~~~~~l~~~~d~~-i~i~~~~~ 274 (372)
T 1k8k_C 253 ITESSLVAAGHDCF-PVLFTYDS 274 (372)
T ss_dssp EETTEEEEEETTSS-CEEEEEET
T ss_pred ecCCCEEEEEeCCe-EEEEEccC
Confidence 5777777765544 45566554
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00023 Score=67.60 Aligned_cols=257 Identities=13% Similarity=0.089 Sum_probs=138.5
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcch-------------hhc
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHI-------------RQC 120 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~-------------~~~ 120 (382)
++.|..+|..+++.+-........ .....+.+++..++.+..+..+.--+. +.+
T Consensus 87 D~~v~iWd~~~~~~~~~~~~h~~~-------------v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~ 153 (380)
T 3iz6_a 87 DGRLIVWNALTSQKTHAIKLHCPW-------------VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVL 153 (380)
T ss_dssp TSEEEEEETTTTEEEEEEECCCTT-------------CCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBC
T ss_pred CCeEEEEECCCCccceEEecCCCC-------------EEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeec
Confidence 899999999999988776642111 123455666555555443311100000 000
Q ss_pred cc--ccCCCCCCCC--CCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEE
Q 040693 121 QE--ENNQTTPTSP--DKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMML 196 (382)
Q Consensus 121 ~~--~~~~~~~~~~--~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 196 (382)
.+ +...+..... ..++..+..++.|..+|..+|+.+-.+....... . ..+ +.
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~----------------------h-~~~-v~ 209 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG----------------------H-TAD-VL 209 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS----------------------C-CSC-EE
T ss_pred cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC----------------------C-ccC-eE
Confidence 00 0000100011 1234445667899999999999887664321100 0 111 11
Q ss_pred EeeeCceeecEEEEEccCcEEEEEeCC-CCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCC
Q 040693 197 SMYRNKVKHDIVVAVQKSGFAWALDRD-SGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNS 273 (382)
Q Consensus 197 ~~~~~g~~~~~v~~~~~~g~l~ald~~-tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~ 273 (382)
.+.........++.++.|+.+..+|.. +++.+-.+..-. ........ ++..++.+
T Consensus 210 ~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~-----~~v~~v~~~p~~~~l~s~----------------- 267 (380)
T 3iz6_a 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHE-----GDINSVKFFPDGQRFGTG----------------- 267 (380)
T ss_dssp EEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCS-----SCCCEEEECTTSSEEEEE-----------------
T ss_pred EEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcC-----CCeEEEEEecCCCeEEEE-----------------
Confidence 111111125688889999999999987 444444433211 11122222 44555544
Q ss_pred CCCceEEEEECCCCcEEeeecCCCCC-----CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC----Cc
Q 040693 274 TIAGGWVAMDASNGNVLWSTADPSNG-----TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG----AT 342 (382)
Q Consensus 274 ~~~g~v~a~d~~tG~~~W~~~~~~~~-----~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~----~~ 342 (382)
..++.|..+|.++|+.+-........ .....+.+ ++.+++.+. .+|.|+..|..+++.+.+.... ..
T Consensus 268 s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~h~~ 345 (380)
T 3iz6_a 268 SDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY--SNGDCYVWDTLLAEMVLNLGTLQNSHEG 345 (380)
T ss_dssp CSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC--TTSCEEEEETTTCCEEEEECCSCSSCCC
T ss_pred cCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE--CCCCEEEEECCCCceEEEEecccCCCCC
Confidence 45688999999999988766543211 01122333 345777766 4999999999999988776321 12
Q ss_pred eecceEE-eCCEEEEEeCceeEeecCCccC
Q 040693 343 IYGGASV-SNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 343 ~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
......+ .+++.+++.+....+.+|.+..
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 2233333 3566666555545567777653
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.48 E-value=9.3e-05 Score=67.90 Aligned_cols=123 Identities=15% Similarity=0.132 Sum_probs=72.7
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEEC--CCCcE
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA--SNGNV 289 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~--~tG~~ 289 (382)
.+.|+.+|.. |+..-..... ....+.++ ++..+|+... ..+.|+.+|. ++|++
T Consensus 129 ~~~l~~~d~~-g~~~~~~~~~------~~pngi~~spdg~~lyv~~~----------------~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 129 QGALYSLFPD-HHVKKYFDQV------DISNGLDWSLDHKIFYYIDS----------------LSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp CEEEEEECTT-SCEEEEEEEE------SBEEEEEECTTSCEEEEEEG----------------GGTEEEEEEECTTTCCE
T ss_pred CcEEEEEECC-CCEEEEeecc------ccccceEEcCCCCEEEEecC----------------CCCcEEEEeccCCCCcc
Confidence 3578888875 5443221110 01112222 5667887632 3467888875 78865
Q ss_pred Eeee---cCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEe---CCEEEEEeCc
Q 040693 290 LWST---ADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVS---NGCIYMGNGY 360 (382)
Q Consensus 290 ~W~~---~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~---~g~lyv~~~~ 360 (382)
.-+. ..........-+.++ ++.+|++.. ..+.|+.+|+++|+++-+++.+.....+.++. .++|||++..
T Consensus 186 ~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~-~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 186 SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACY-NGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEE-TTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred cCcEEEEECCCCCCCCCeeEECCCCCEEEEEc-CCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEEEEcCC
Confidence 3221 111100011223444 578888875 45779999999999999998876555556664 3689999874
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=98.47 E-value=4.9e-05 Score=71.04 Aligned_cols=222 Identities=13% Similarity=0.085 Sum_probs=129.5
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.+-........ + ....+.+++..++.+..+
T Consensus 76 Dg~v~iWd~~~~~~~~~~~~~~~~-----------v--~~~~~s~~~~~l~s~~~d------------------------ 118 (340)
T 1got_B 76 DGKLIIWDSYTTNKVHAIPLRSSW-----------V--MTCAYAPSGNYVACGGLD------------------------ 118 (340)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSC-----------E--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCcEEEEECCCCCcceEeecCCcc-----------E--EEEEECCCCCEEEEEeCC------------------------
Confidence 899999999999988776542110 1 124566666666665543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEE--ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceE-EEeeeCceeecEEEE
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYK--QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM-LSMYRNKVKHDIVVA 210 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~v~~ 210 (382)
+.+..+|..+++...+. ...... .++. .... .++.+++
T Consensus 119 ---------~~v~iw~~~~~~~~~~~~~~~~~h~--------------------------~~v~~~~~~----~~~~l~s 159 (340)
T 1got_B 119 ---------NICSIYNLKTREGNVRVSRELAGHT--------------------------GYLSCCRFL----DDNQIVT 159 (340)
T ss_dssp ---------CEEEEEETTTCSBSCEEEEEEECCS--------------------------SCEEEEEEE----ETTEEEE
T ss_pred ---------CeEEEEECccCCCcceeEEEecCCC--------------------------ccEEEEEEC----CCCcEEE
Confidence 78888888776532221 111110 1111 1111 1456888
Q ss_pred EccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCc
Q 040693 211 VQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGN 288 (382)
Q Consensus 211 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~ 288 (382)
+..|+.+..+|..+|+.+-.+.... ........ ++..++.+ ..++.|..+|.++++
T Consensus 160 ~s~d~~i~~wd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~l~sg-----------------~~d~~v~~wd~~~~~ 217 (340)
T 1got_B 160 SSGDTTCALWDIETGQQTTTFTGHT-----GDVMSLSLAPDTRLFVSG-----------------ACDASAKLWDVREGM 217 (340)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCS-----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCS
T ss_pred EECCCcEEEEECCCCcEEEEEcCCC-----CceEEEEECCCCCEEEEE-----------------eCCCcEEEEECCCCe
Confidence 8899999999999999887765321 12222222 34444444 345889999999999
Q ss_pred EEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc--eecceEE-eCCEEE-EEeCcee
Q 040693 289 VLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT--IYGGASV-SNGCIY-MGNGYKV 362 (382)
Q Consensus 289 ~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~--~~~~p~~-~~g~ly-v~~~~g~ 362 (382)
.+-+....... ...+.+ ++.+++.++ .++.|..+|..+++.+..+..... ...+..+ .+++++ .++.+|.
T Consensus 218 ~~~~~~~h~~~--v~~v~~~p~~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 218 CRQTFTGHESD--INAICFFPNGNAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp EEEEECCCSSC--EEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred eEEEEcCCcCC--EEEEEEcCCCCEEEEEc--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe
Confidence 88776644321 122223 245666666 499999999999998877754331 1122222 244444 4455544
Q ss_pred EeecCCccCCCCCeEEEE
Q 040693 363 TVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 363 ~~~~~~~~~~~g~~l~~~ 380 (382)
+.+|. ..+++.+..+
T Consensus 294 -i~vwd--~~~~~~~~~~ 308 (340)
T 1got_B 294 -CNVWD--ALKADRAGVL 308 (340)
T ss_dssp -EEEEE--TTTCCEEEEE
T ss_pred -EEEEE--cccCcEeeEe
Confidence 45554 3445555443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-05 Score=75.36 Aligned_cols=226 Identities=15% Similarity=0.084 Sum_probs=132.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|++||+++-...+... +. +.++..+.+++..+++++.+
T Consensus 124 d~tV~lWd~~tg~~~~~~~~~~~---------~~--~V~sv~fspdg~~lasgs~D------------------------ 168 (420)
T 4gga_A 124 DNSVYLWSASSGDILQLLQMEQP---------GE--YISSVAWIKEGNYLAVGTSS------------------------ 168 (420)
T ss_dssp TTEEEEEETTTCCEEEEEECCST---------TC--CEEEEEECTTSSEEEEEETT------------------------
T ss_pred CCEEEEEECCCCCEEEEEEecCC---------CC--cEEEEEECCCCCEEEEEECC------------------------
Confidence 78999999999999887775311 11 11245677777778777654
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+|+.+......... +..+.. ....+..+..
T Consensus 169 ---------g~v~iWd~~~~~~~~~~~~h~~~-----------------------------v~~~s~---~~~~l~sgs~ 207 (420)
T 4gga_A 169 ---------AEVQLWDVQQQKRLRNMTSHSAR-----------------------------VGSLSW---NSYILSSGSR 207 (420)
T ss_dssp ---------SCEEEEETTTTEEEEEECCCSSC-----------------------------EEEEEE---ETTEEEEEET
T ss_pred ---------CeEEEEEcCCCcEEEEEeCCCCc-----------------------------eEEEee---CCCEEEEEeC
Confidence 89999999999999877543221 111111 1467788888
Q ss_pred CcEEEEEeCCCCCeee-eeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 214 SGFAWALDRDSGSLIW-SMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W-~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
++.+...|..+....- ...... ........ ++..+... ..++.+..+|..+++..
T Consensus 208 d~~i~~~d~~~~~~~~~~~~~h~-----~~~~~~~~~~~g~~l~s~-----------------~~D~~v~i~~~~~~~~~ 265 (420)
T 4gga_A 208 SGHIHHHDVRVAEHHVATLSGHS-----QEVCGLRWAPDGRHLASG-----------------GNDNLVNVWPSAPGEGG 265 (420)
T ss_dssp TSEEEEEETTSSSCEEEEEECCS-----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESSCCSSC
T ss_pred CCceeEeeecccceeeEEecccc-----cceeeeeecCCCCeeeee-----------------eccccceEEeecccccc
Confidence 9999999987654332 222111 01111111 34444444 33577888898888654
Q ss_pred eeec--CCCCCCCCcceEE---eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeC--cee
Q 040693 291 WSTA--DPSNGTAPGPVTV---ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNG--YKV 362 (382)
Q Consensus 291 W~~~--~~~~~~~~~~~~~---~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~--~g~ 362 (382)
+... ..........+.. ...++..++...++.|...|..+|+.+..+.....+.+.... .++.++++++ ++.
T Consensus 266 ~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 266 WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 345 (420)
T ss_dssp SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCE
Confidence 3211 1110000111111 224555544335789999999999999998876654433333 4556666553 333
Q ss_pred EeecCCccCCCCCeEEEE
Q 040693 363 TVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 363 ~~~~~~~~~~~g~~l~~~ 380 (382)
+.+| |..+++.+..|
T Consensus 346 -I~iw--d~~~~~~v~~l 360 (420)
T 4gga_A 346 -LVIW--KYPTMAKVAEL 360 (420)
T ss_dssp -EEEE--ETTTCCEEEEE
T ss_pred -EEEE--ECCCCcEEEEE
Confidence 3444 55667777655
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-05 Score=77.27 Aligned_cols=274 Identities=7% Similarity=-0.101 Sum_probs=150.7
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
||++|+|++=+..++..+ .+..+| .+..+|++....+-... -..++.|..+|++|++++.+..+......
T Consensus 51 ID~~t~~v~~~i~vG~~P--~i~~sp--Dg~~lyVan~~~~r~~~----G~~~~~VsviD~~T~~vv~~I~v~~~~~~-- 120 (368)
T 1mda_H 51 SCAGCGVTLGHSLGAFLS--LAVAGH--SGSDFALASTSFARSAK----GKRTDYVEVFDPVTFLPIADIELPDAPRF-- 120 (368)
T ss_dssp EETTTTEEEEEEEECTTC--EEEECT--TSSCEEEEEEEETTTTS----SSEEEEEEEECTTTCCEEEEEEETTSCSC--
T ss_pred EECCCCeEEEEEeCCCCC--ceEECC--CCCEEEEEccccccccc----CCCCCEEEEEECCCCCEEEEEECCCcccc--
Confidence 688999998877775433 122222 35679997631000000 00157899999999999999887411100
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEE--EECCCCcEEEEE
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLA--LDLDTGKIVWYK 159 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~a--ld~~tG~~~W~~ 159 (382)
..|... ....+++++.++|++.... ...+.. ||++| +-+.
T Consensus 121 --~~g~~P--~~ia~SpDGk~lyVan~~~-------------------------------~~~v~V~~iD~~t---v~~i 162 (368)
T 1mda_H 121 --SVGPRV--HIIGNCASSACLLFFLFGS-------------------------------SAAAGLSVPGASD---DQLT 162 (368)
T ss_dssp --CBSCCT--TSEEECTTSSCEEEEECSS-------------------------------SCEEEEEETTTEE---EEEE
T ss_pred --ccCCCc--ceEEEcCCCCEEEEEccCC-------------------------------CCeEEEEEEchhh---ceEE
Confidence 001111 1367888999999975320 156777 89887 3344
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCC-----CCeeeeeccC
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDS-----GSLIWSMEAG 234 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~t-----G~~~W~~~~~ 234 (382)
..+.. ..+. .+| ....++...++.+..+|.++ |++.|... .
T Consensus 163 ~v~~~----------------------------~~~~---p~g--~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~ 208 (368)
T 1mda_H 163 KSASC----------------------------FHIH---PGA--AATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-G 208 (368)
T ss_dssp ECSSC----------------------------CCCE---EEE--TTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-T
T ss_pred ECCCc----------------------------eEEc---cCC--CeEEEEEcCCCCEEEEECccccccCCeEEEEee-e
Confidence 33211 0011 011 23444556788888899997 88777432 0
Q ss_pred CCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE----eeecCC----C--CCCCCcc
Q 040693 235 PGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL----WSTADP----S--NGTAPGP 304 (382)
Q Consensus 235 ~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~----W~~~~~----~--~~~~~~~ 304 (382)
. ...+.... ...+++.+|.. .. +.++.+|..+++.. |..... . .+....+
T Consensus 209 ~-i~vg~~P~-~~~~~~~~~~v-----------------s~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~ 268 (368)
T 1mda_H 209 A-QNCSSQAA-QANYPGMLVWA-----------------VA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQM 268 (368)
T ss_dssp T-SCBCSCCE-EETTTTEEEEC-----------------BS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSC
T ss_pred e-eeCCCCcc-ccccCCEEEEE-----------------cC-CEEEEEECCCCcceEEEEEEeccccccccccccCccee
Confidence 0 00111111 12244555544 34 77999999765422 332110 0 0011112
Q ss_pred eEE--eCCEEEEeee-c-C-----CCcEEEEeCCCCcEeEEEecCCceecceEEeCC-EEEEEeC--ceeEeecCCccCC
Q 040693 305 VTV--ANGVLFGGST-Y-R-----QGPIYAMDVKTGKILWSYDTGATIYGGASVSNG-CIYMGNG--YKVTVGFGNKNFT 372 (382)
Q Consensus 305 ~~~--~~~~v~~~~~-~-~-----~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g-~lyv~~~--~g~~~~~~~~~~~ 372 (382)
+.+ +++++|++.. . . .+.+.+||.++++++-+++++..-.+-....++ ++|+++. .+. +.-+|..
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~---VsVID~~ 345 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV---LDIYDAA 345 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTE---EEEEESS
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCe---EEEEECC
Confidence 333 4578998763 1 1 235779999999999888876532222222344 5888776 334 3447888
Q ss_pred CCCeEEEE
Q 040693 373 SGTSLYAF 380 (382)
Q Consensus 373 ~g~~l~~~ 380 (382)
+++.+-..
T Consensus 346 t~kvv~~I 353 (368)
T 1mda_H 346 SDQDQSSV 353 (368)
T ss_dssp SCEEEEEC
T ss_pred CCcEEEEE
Confidence 88877543
|
| >3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-05 Score=79.48 Aligned_cols=172 Identities=14% Similarity=0.191 Sum_probs=100.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCC--CCCCCCCCCceEEEeeeCceeecEEEEEccCc--EE
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGP--SPDADFGEAPMMLSMYRNKVKHDIVVAVQKSG--FA 217 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g--~l 217 (382)
+|.|+|||.. |+++|.+=.... ..... .+..|. +. ...|.+-.+|++.+...++.-+-+|+.+...| .+
T Consensus 94 DGmLHaF~a~-G~E~wAfiP~~~--l~~L~-~l~~~~---y~~~~h~Y~VDG~p~~~Dv~~~g~wrtvLvggmg~GG~~~ 166 (570)
T 3hx6_A 94 DGMLHGFDTD-GNETFAFIPSAV--FEKMH-KLTARG---YQGGAHQFYVDGSPVVADAFFGGAWHTVLIGSLRAGGKGL 166 (570)
T ss_dssp SSCEEECCSS-CCCCEEECCHHH--HHHCC-----------CCHHHHHHHHCCCEEEEEEETTEEEEEEEEECTTSCSEE
T ss_pred CceEEEECCC-CcEEEEECCHHH--HHHHH-HHhccC---ccccCcceecCCCCEEEEEEeCCcceEEEEEecCCCCcEE
Confidence 4999999987 999999832211 00000 000000 00 00223457888887766664455566665443 79
Q ss_pred EEEeCCC---CCeeeeeccCCCCCCCCcccceee----eCC-eEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE
Q 040693 218 WALDRDS---GSLIWSMEAGPGGLGGGAMWGAAT----DER-RIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV 289 (382)
Q Consensus 218 ~ald~~t---G~~~W~~~~~~~~~~g~~~~~~~~----~~~-~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~ 289 (382)
||||..+ .+++|+++.......|.....|.+ .+. .++++.. .+. ......|+.+|++||++
T Consensus 167 yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~G-Y~~----------~~~~~~Lyv~d~~tG~l 235 (570)
T 3hx6_A 167 FALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNG-YSS----------MNDKAALLIIDMETGAI 235 (570)
T ss_dssp EEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECC-BSC----------TTCCEEEEEEETTTCCE
T ss_pred EEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccc-cCC----------CCCccEEEEEECCCCce
Confidence 9999876 789999984332233434444443 122 3333322 110 12346799999999999
Q ss_pred EeeecCCCCC----CCCcceEEe-C-----CEEEEeeecCCCcEEEEeCCCCcE
Q 040693 290 LWSTADPSNG----TAPGPVTVA-N-----GVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 290 ~W~~~~~~~~----~~~~~~~~~-~-----~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
+|++...... ..+.+.+++ + +++|++.. .|.|+.||+.+...
T Consensus 236 i~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl--~GnlWRfDl~~~~~ 287 (570)
T 3hx6_A 236 TRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDL--QGNLWRFDLIAGKV 287 (570)
T ss_dssp EEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEET--TSEEEEEECSCSSC
T ss_pred EEEEecCCCCccCCccccceEEecCCCCceeEEEEEeC--CCcEEEEEcCCCCc
Confidence 9998765311 112233343 1 48999985 99999999987654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=9.4e-05 Score=81.11 Aligned_cols=252 Identities=13% Similarity=0.069 Sum_probs=136.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.+...........................+.+++..++++..
T Consensus 764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~------------------------- 818 (1249)
T 3sfz_A 764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK------------------------- 818 (1249)
T ss_dssp SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET-------------------------
T ss_pred CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC-------------------------
Confidence 8999999999999888876532111100000000001123456666666666542
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.+..+|..+++.+......... ...-..+..+ +..++++..
T Consensus 819 ---------~~v~~~d~~~~~~~~~~~~~~~~--------------------------~v~~~~~sp~---~~~l~~~~~ 860 (1249)
T 3sfz_A 819 ---------NKVLLFDIHTSGLLAEIHTGHHS--------------------------TIQYCDFSPY---DHLAVIALS 860 (1249)
T ss_dssp ---------TEEEEEETTTCCEEEEEECSSSS--------------------------CCCEEEECSS---TTEEEEECS
T ss_pred ---------CcEEEEEecCCCceeEEcCCCCC--------------------------ceEEEEEcCC---CCEEEEEeC
Confidence 78999999999998887654321 1111111112 467778888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCcccccc--------------------------
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNF-------------------------- 265 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~-------------------------- 265 (382)
++.+..+|..+++.+........ ....... ++..++.+..+..-..|
T Consensus 861 dg~v~vwd~~~~~~~~~~~~h~~-----~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1249)
T 3sfz_A 861 QYCVELWNIDSRLKVADCRGHLS-----WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENET 935 (1249)
T ss_dssp SSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEE
T ss_pred CCeEEEEEcCCCceeeecCCCcc-----ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCc
Confidence 88899999888887766553211 1111111 22222222211100000
Q ss_pred --------------------------------ccCCCCC----CCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--
Q 040693 266 --------------------------------NLKPSKN----STIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV-- 307 (382)
Q Consensus 266 --------------------------------~~~~~~~----~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-- 307 (382)
...|... ...++.|..+|..+++........... ...+.+
T Consensus 936 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~--v~~l~~s~ 1013 (1249)
T 3sfz_A 936 MVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA--VRHIQFTA 1013 (1249)
T ss_dssp EEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC--CCCEEECS
T ss_pred EEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc--eEEEEECC
Confidence 0111110 134567888888888877766544322 222333
Q ss_pred eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 308 ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 308 ~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
++..++.++ .++.|..+|..+|+.+........+..-....+++++.++.+|. +.+| |..+|+.+..|
T Consensus 1014 dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~-v~vw--d~~~~~~~~~~ 1081 (1249)
T 3sfz_A 1014 DGKTLISSS--EDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGT-VKVW--NVITGRIERDF 1081 (1249)
T ss_dssp SSSCEEEEC--SSSBEEEEETTTTEEECCBCCSSCEEEEEECSSSEEEEEESSSE-EEEE--ETTTTCCCEEE
T ss_pred CCCEEEEEc--CCCEEEEEECCCCceEEEecCCCcEEEEEEcCCCcEEEEECCCc-EEEE--ECCCCceeEEE
Confidence 344566655 48999999999998875443333333222234777777777765 3444 44556655444
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-05 Score=74.36 Aligned_cols=221 Identities=14% Similarity=0.058 Sum_probs=127.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++|+.+-++.... ..+ ....+.+++..++.+..+
T Consensus 129 Dg~i~vwd~~~~~~~~~l~~h~-----------~~V--~~v~~~~~~~~l~sgs~D------------------------ 171 (410)
T 1vyh_C 129 DATIKVWDYETGDFERTLKGHT-----------DSV--QDISFDHSGKLLASCSAD------------------------ 171 (410)
T ss_dssp SSCEEEEETTTCCCCEEECCCS-----------SCE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEECCCCcEEEEEeccC-----------CcE--EEEEEcCCCCEEEEEeCC------------------------
Confidence 8899999999998776554211 111 134556665666665543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++.+-.+......+ .-..+.++ +..|++++.
T Consensus 172 ---------~~i~iwd~~~~~~~~~~~~h~~~V---------------------------~~v~~~p~---~~~l~s~s~ 212 (410)
T 1vyh_C 172 ---------MTIKLWDFQGFECIRTMHGHDHNV---------------------------SSVSIMPN---GDHIVSASR 212 (410)
T ss_dssp ---------SCCCEEETTSSCEEECCCCCSSCE---------------------------EEEEECSS---SSEEEEEET
T ss_pred ---------CeEEEEeCCCCceeEEEcCCCCCE---------------------------EEEEEeCC---CCEEEEEeC
Confidence 788888988888765443222111 01111222 467888999
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
|+.+..+|..+|+.+-.+..... ....... ++..++.+ ..++.|..+|..+++..-
T Consensus 213 D~~i~~wd~~~~~~~~~~~~h~~-----~v~~~~~~~~g~~l~s~-----------------s~D~~v~vwd~~~~~~~~ 270 (410)
T 1vyh_C 213 DKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASC-----------------SNDQTVRVWVVATKECKA 270 (410)
T ss_dssp TSEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCCEEE
T ss_pred CCeEEEEECCCCcEEEEEeCCCc-----cEEEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCceee
Confidence 99999999999998776653211 1111111 34444444 345789999999987765
Q ss_pred eecCCCCCCCCcceEE----------------------eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE
Q 040693 292 STADPSNGTAPGPVTV----------------------ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV 349 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~----------------------~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~ 349 (382)
+....... ...+.+ .+..++.++ .++.|..+|..+|+.+..+........+..+
T Consensus 271 ~~~~h~~~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~ 346 (410)
T 1vyh_C 271 ELREHRHV--VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346 (410)
T ss_dssp EECCCSSC--EEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred EecCCCce--EEEEEEcCcccccchhhhccccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECCCCcEEEEEE
Confidence 54332210 000111 134566666 4899999999999998877644333333333
Q ss_pred -eCCE-EEEEeCceeEeecCCccCCCCCeEEE
Q 040693 350 -SNGC-IYMGNGYKVTVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 350 -~~g~-lyv~~~~g~~~~~~~~~~~~g~~l~~ 379 (382)
.+++ |+.++.+| .+.+|.+ .+++.+..
T Consensus 347 ~~~g~~l~s~s~D~-~i~vwd~--~~~~~~~~ 375 (410)
T 1vyh_C 347 HSGGKFILSCADDK-TLRVWDY--KNKRCMKT 375 (410)
T ss_dssp CSSSSCEEEEETTT-EEEEECC--TTSCCCEE
T ss_pred cCCCCEEEEEeCCC-eEEEEEC--CCCceEEE
Confidence 3444 44444454 4556654 44554443
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=0.00016 Score=65.62 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=105.9
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
+.|..+| +++.+........... -...... .+..++++..++.+..+|
T Consensus 124 ~~i~~~d--~~~~~~~~~~~~~~v~---------------------------~~~~~~~--~~~~l~~~~~d~~i~i~d- 171 (313)
T 3odt_A 124 KTAKVWK--EGSLVYNLQAHNASVW---------------------------DAKVVSF--SENKFLTASADKTIKLWQ- 171 (313)
T ss_dssp SEEEEEE--TTEEEEEEECCSSCEE---------------------------EEEEEET--TTTEEEEEETTSCEEEEE-
T ss_pred CCEEEEc--CCcEEEecccCCCcee---------------------------EEEEccC--CCCEEEEEECCCCEEEEe-
Confidence 8899998 6888887765433211 0111111 156788888899999999
Q ss_pred CCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 223 DSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 223 ~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
.++....+.... ......... .++.++++ ..++.|..+|.++++.+.+.......
T Consensus 172 -~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~~~~-- 227 (313)
T 3odt_A 172 -NDKVIKTFSGIH----NDVVRHLAVVDDGHFISC-----------------SNDGLIKLVDMHTGDVLRTYEGHESF-- 227 (313)
T ss_dssp -TTEEEEEECSSC----SSCEEEEEEEETTEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCSSC--
T ss_pred -cCceEEEEeccC----cccEEEEEEcCCCeEEEc-----------------cCCCeEEEEECCchhhhhhhhcCCce--
Confidence 445555444311 112222222 45555554 34588999999999999888754321
Q ss_pred CcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccC
Q 040693 302 PGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 302 ~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
...+.+. ++.++.++ .++.|+.+|..+++.+..+............ .++++++++.+|. +.+|.++.
T Consensus 228 i~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~-i~iw~~~~ 296 (313)
T 3odt_A 228 VYCIKLLPNGDIVSCG--EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGDIIVGSSDNL-VRIFSQEK 296 (313)
T ss_dssp EEEEEECTTSCEEEEE--TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSCEEEEETTSC-EEEEESCG
T ss_pred EEEEEEecCCCEEEEe--cCCEEEEEECCCCceeEEEeccCceEEEEEEccCCCEEEEeCCCc-EEEEeCCC
Confidence 2223332 45666666 4999999999999999998776543333333 4667777777765 45565543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.0002 Score=67.38 Aligned_cols=169 Identities=15% Similarity=0.098 Sum_probs=101.3
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+|+.+-.+......+ ....+..+ ..+..+++++.|+.+..+|
T Consensus 175 D~~v~lwd~~~~~~~~~~~~h~~~v---------------------------~~~~~~~~-~~g~~l~sgs~Dg~v~~wd 226 (354)
T 2pbi_B 175 DGTCALWDVESGQLLQSFHGHGADV---------------------------LCLDLAPS-ETGNTFVSGGCDKKAMVWD 226 (354)
T ss_dssp TSEEEEEETTTCCEEEEEECCSSCE---------------------------EEEEECCC-SSCCEEEEEETTSCEEEEE
T ss_pred CCcEEEEeCCCCeEEEEEcCCCCCe---------------------------EEEEEEeC-CCCCEEEEEeCCCeEEEEE
Confidence 3899999999999887765433211 11111111 1146788899999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
..+|+.+-.+..-. ........ ++..++.+ ..++.|..+|+++++.+-........
T Consensus 227 ~~~~~~~~~~~~h~-----~~v~~v~~~p~~~~l~s~-----------------s~D~~v~lwd~~~~~~~~~~~~~~~~ 284 (354)
T 2pbi_B 227 MRSGQCVQAFETHE-----SDVNSVRYYPSGDAFASG-----------------SDDATCRLYDLRADREVAIYSKESII 284 (354)
T ss_dssp TTTCCEEEEECCCS-----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred CCCCcEEEEecCCC-----CCeEEEEEeCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEEcCCCcc
Confidence 99999877665321 11222222 44555554 34588999999999876555433211
Q ss_pred CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEE-EeCcee
Q 040693 300 TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYM-GNGYKV 362 (382)
Q Consensus 300 ~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv-~~~~g~ 362 (382)
.....+.+ ++.+++.+. .++.|..+|..+|+.+-.+........+..+ .+++.++ ++.+|.
T Consensus 285 ~~~~~~~~s~~g~~l~~g~--~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~ 349 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGY--NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349 (354)
T ss_dssp SCEEEEEECTTSSEEEEEE--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSE
T ss_pred cceeEEEEeCCCCEEEEEE--CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCC
Confidence 11222323 245666666 4899999999999988766433333333333 3455444 444543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=98.40 E-value=3.5e-05 Score=72.86 Aligned_cols=153 Identities=12% Similarity=0.032 Sum_probs=90.4
Q ss_pred ecE-EEEEccCcEEEEEeCCC------CCeee-----eecc--CCCCCCCCcccceee-eCCeEEEEecCccccccccCC
Q 040693 205 HDI-VVAVQKSGFAWALDRDS------GSLIW-----SMEA--GPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKP 269 (382)
Q Consensus 205 ~~~-v~~~~~~g~l~ald~~t------G~~~W-----~~~~--~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~ 269 (382)
+.. ++++..++.+..+|..+ ++.+. .+.. ............... .++.++++
T Consensus 137 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~------------- 203 (397)
T 1sq9_A 137 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATG------------- 203 (397)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEEEEE-------------
T ss_pred CceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCceEEEE-------------
Confidence 456 88888899999999988 66655 4321 000001112222222 22344444
Q ss_pred CCCCCCCceEEEEECCCCcEEeeecC---C---CCCCCCcceEE--eCCEEEEeeecCC---CcEEEEeCCCCcEeEEEe
Q 040693 270 SKNSTIAGGWVAMDASNGNVLWSTAD---P---SNGTAPGPVTV--ANGVLFGGSTYRQ---GPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 270 ~~~~~~~g~v~a~d~~tG~~~W~~~~---~---~~~~~~~~~~~--~~~~v~~~~~~~~---g~l~~ld~~tG~ilw~~~ 338 (382)
..++.|..+|.++++.+.+... . ... ...+.+ ++.++++++. + +.|..+|..+++.+.++.
T Consensus 204 ----~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~--i~~i~~~~~~~~l~~~~~--d~~~g~i~i~d~~~~~~~~~~~ 275 (397)
T 1sq9_A 204 ----FNNGTVQISELSTLRPLYNFESQHSMINNSNS--IRSVKFSPQGSLLAIAHD--SNSFGCITLYETEFGERIGSLS 275 (397)
T ss_dssp ----CTTSEEEEEETTTTEEEEEEECCC---CCCCC--EEEEEECSSTTEEEEEEE--ETTEEEEEEEETTTCCEEEEEC
T ss_pred ----eCCCcEEEEECCCCceeEEEeccccccccCCc--cceEEECCCCCEEEEEec--CCCCceEEEEECCCCcccceec
Confidence 4468899999999999998876 2 211 122223 3456776664 7 899999999999999887
Q ss_pred c-------------CCceecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 339 T-------------GATIYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 339 ~-------------~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
. .......... .+..|+.++.+|. +.+| |..+++.+..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iw--d~~~~~~~~~~~ 330 (397)
T 1sq9_A 276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGK-LRFW--DVKTKERITTLN 330 (397)
T ss_dssp BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSE-EEEE--ETTTTEEEEEEE
T ss_pred cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCe-EEEE--EcCCCceeEEEe
Confidence 5 2222233333 2344555555554 4455 445577777664
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.39 E-value=8e-05 Score=70.66 Aligned_cols=256 Identities=13% Similarity=0.069 Sum_probs=137.8
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
...+|+........ .++.|+.+|.+||+++-+.... ... ..++++++..+|++....
T Consensus 15 ~~~~yv~~~~~~~~--------~d~~v~v~D~~t~~~~~~i~~g------------~~p---~i~~spdg~~lyv~~~~~ 71 (361)
T 2oiz_A 15 ENRIYVMDSVFMHL--------TESRVHVYDYTNGKFLGMVPTA------------FNG---HVQVSNDGKKIYTMTTYH 71 (361)
T ss_dssp GGEEEEEECCGGGG--------GGCEEEEEETTTCCEEEEEECC------------EEE---EEEECTTSSEEEEEEEEE
T ss_pred CCEEEEECCCCCcc--------ccCeEEEEECCCCeEEEEecCC------------CCC---ceEECCCCCEEEEEEecc
Confidence 45688866422111 1678999999999998665542 111 257888889999975310
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFG 190 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (382)
.+...+..++.|..+|..|++++-+........ ...
T Consensus 72 -----------------------~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~---------------------~~g 107 (361)
T 2oiz_A 72 -----------------------ERITRGKRSDVVEVWDADKLTFEKEISLPPKRV---------------------QGL 107 (361)
T ss_dssp -----------------------TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBC---------------------CBC
T ss_pred -----------------------cccccCCCCCEEEEEECcCCcEEEEEEcCcccc---------------------ccC
Confidence 000001113679999999999999887653210 001
Q ss_pred CCceEEEeeeCceeecEEEEEcc--CcEEEEEeCCCCCeeee-eccCCCCCCCCcccceee--eCCeEEEEecCcccccc
Q 040693 191 EAPMMLSMYRNKVKHDIVVAVQK--SGFAWALDRDSGSLIWS-MEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNF 265 (382)
Q Consensus 191 ~~p~~~~~~~~g~~~~~v~~~~~--~g~l~ald~~tG~~~W~-~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~ 265 (382)
..|.-..+.++| ..+|+... ++.+..+|.++++++-. .+.+. .++... ++...|+..
T Consensus 108 ~~p~~i~~spdg---~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~-------~~~v~~~p~~~~~~~~~-------- 169 (361)
T 2oiz_A 108 NYDGLFRQTTDG---KFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG-------CWSVIPQPNRPRSFMTI-------- 169 (361)
T ss_dssp CCGGGEEECTTS---SEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT-------EEEEEECTTSSSEEEEE--------
T ss_pred CCcceEEECCCC---CEEEEECCCCCCeEEEEECCCCcEEEEEecCCC-------cceeEEcCCCCeeEEEE--------
Confidence 223333333344 46666543 57899999999998877 65431 111111 222333332
Q ss_pred ccCCCCCCCCCceEEEEECCC-CcEEeeecCCC-----CCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEe--EEE
Q 040693 266 NLKPSKNSTIAGGWVAMDASN-GNVLWSTADPS-----NGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKIL--WSY 337 (382)
Q Consensus 266 ~~~~~~~~~~~g~v~a~d~~t-G~~~W~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~il--w~~ 337 (382)
..+|.+..++..+ |+..++..... .........-++..+++.+. ++.++.+|..++++. -.+
T Consensus 170 --------~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~v~v~d~~~~~~~~~~~~ 239 (361)
T 2oiz_A 170 --------CGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSY--YGNVYSADFSGDEVKVDGPW 239 (361)
T ss_dssp --------ETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBT--TSEEEEEECSSSSCEEEEEE
T ss_pred --------CCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeC--CCeEEEEEecCCCceecccc
Confidence 2245666666654 77664432100 00011111233445555553 789999998765432 122
Q ss_pred ecCC------cee-c---ceEE--eCCEEEEEeC-cee-------EeecCCccCCCCCeEEEEE
Q 040693 338 DTGA------TIY-G---GASV--SNGCIYMGNG-YKV-------TVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 338 ~~~~------~~~-~---~p~~--~~g~lyv~~~-~g~-------~~~~~~~~~~~g~~l~~~~ 381 (382)
++.. ... . ..++ .++++|+... ++. ...++.+|..+++.+-.+.
T Consensus 240 ~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~ 303 (361)
T 2oiz_A 240 SLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP 303 (361)
T ss_dssp ESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE
T ss_pred cccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe
Confidence 2111 000 0 1222 3589999864 221 1234567788888776543
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00013 Score=66.44 Aligned_cols=226 Identities=16% Similarity=0.086 Sum_probs=130.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|.+||+.+-....... ..+..+..+.+++..++.+..+
T Consensus 44 D~tV~iWd~~tg~~~~~~~~~~~-----------~~~V~~v~~~~~~~~l~sgs~D------------------------ 88 (318)
T 4ggc_A 44 DNSVYLWSASSGDILQLLQMEQP-----------GEYISSVAWIKEGNYLAVGTSS------------------------ 88 (318)
T ss_dssp TTEEEEEETTTCCEEEEEECCST-----------TCCEEEEEECTTSSEEEEEETT------------------------
T ss_pred CCEEEEEECCCCCEEEEEEecCC-----------CCeEEEEEECCCCCEEEEEECC------------------------
Confidence 78999999999999887765211 1111235667776777766543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|...|..+|+.+...+...... .... .....+..+..
T Consensus 89 ---------g~v~iw~~~~~~~~~~~~~h~~~~-----------------------------~~~~---~~~~~l~s~~~ 127 (318)
T 4ggc_A 89 ---------AEVQLWDVQQQKRLRNMTSHSARV-----------------------------GSLS---WNSYILSSGSR 127 (318)
T ss_dssp ---------SEEEEEETTTTEEEEEEECCSSCE-----------------------------EEEE---EETTEEEEEET
T ss_pred ---------CcEEEeecCCceeEEEecCccceE-----------------------------EEee---cCCCEEEEEec
Confidence 899999999999998876543211 1111 11456777888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+...+..++...-...... ......... ++..++.+ ..++.|..+|.++++...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~s~-----------------~~d~~i~iwd~~~~~~~~ 186 (318)
T 4ggc_A 128 SGHIHHHDVRVAEHHVATLSGH----SQEVCGLRWAPDGRHLASG-----------------GNDNLVNVWPSAPGEGGW 186 (318)
T ss_dssp TSEEEEEETTSSSCEEEEEECC----SSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESSCBTTBS
T ss_pred CCceEeeecCCCceeEEEEcCc----cCceEEEEEcCCCCEEEEE-----------------ecCcceeEEECCCCcccc
Confidence 8888888877665433322111 001111111 34445444 345789999999987543
Q ss_pred eecCCCCCCCCcc---eEE---eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeC--cee
Q 040693 292 STADPSNGTAPGP---VTV---ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNG--YKV 362 (382)
Q Consensus 292 ~~~~~~~~~~~~~---~~~---~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~--~g~ 362 (382)
........ ...+ +.. ....++..+...++.|...|..+++..........+...... .++.++++++ ++.
T Consensus 187 ~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 187 VPLQTFTQ-HQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp CCSEEECC-CCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred cceeeecc-cCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE
Confidence 32211100 1111 111 224555554435678999999988888777665544333322 4566666553 333
Q ss_pred EeecCCccCCCCCeEEEE
Q 040693 363 TVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 363 ~~~~~~~~~~~g~~l~~~ 380 (382)
+.+| |..+|+.+..|
T Consensus 266 -i~iw--d~~~~~~~~~l 280 (318)
T 4ggc_A 266 -LVIW--KYPTMAKVAEL 280 (318)
T ss_dssp -EEEE--ETTTCCEEEEE
T ss_pred -EEEE--ECCCCcEEEEE
Confidence 3444 45667777665
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.8e-05 Score=70.61 Aligned_cols=209 Identities=10% Similarity=-0.005 Sum_probs=120.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCcee--eCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSI--DPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTS 131 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
++.|..+|..+++.+........ + ....+ .+++..++.+..+
T Consensus 107 dg~v~iwd~~~~~~~~~~~~~~~------------v--~~~~~~~~~~~~~l~~~~~d---------------------- 150 (368)
T 3mmy_A 107 DKTAKMWDLSSNQAIQIAQHDAP------------V--KTIHWIKAPNYSCVMTGSWD---------------------- 150 (368)
T ss_dssp TSEEEEEETTTTEEEEEEECSSC------------E--EEEEEEECSSCEEEEEEETT----------------------
T ss_pred CCcEEEEEcCCCCceeeccccCc------------e--EEEEEEeCCCCCEEEEccCC----------------------
Confidence 88999999999998765432111 1 12333 4454455555443
Q ss_pred CCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE
Q 040693 132 PDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211 (382)
Q Consensus 132 ~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~ 211 (382)
+.|..+|..+++.+..+...... .... .....++++
T Consensus 151 -----------g~i~vwd~~~~~~~~~~~~~~~~----------------------------~~~~-----~~~~~~~~~ 186 (368)
T 3mmy_A 151 -----------KTLKFWDTRSSNPMMVLQLPERC----------------------------YCAD-----VIYPMAVVA 186 (368)
T ss_dssp -----------SEEEEECSSCSSCSEEEECSSCE----------------------------EEEE-----EETTEEEEE
T ss_pred -----------CcEEEEECCCCcEEEEEecCCCc----------------------------eEEE-----ecCCeeEEE
Confidence 89999999999999888765321 0111 114567777
Q ss_pred ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCC----eEEEEecCccccccccCCCCCCCCCceEEEEECCCC
Q 040693 212 QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDER----RIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG 287 (382)
Q Consensus 212 ~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG 287 (382)
..++.+..+|..+....+......... ............ .++++ ..++.+..+|..++
T Consensus 187 ~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 187 TAERGLIVYQLENQPSEFRRIESPLKH-QHRCVAIFKDKQNKPTGFALG-----------------SIEGRVAIHYINPP 248 (368)
T ss_dssp EGGGCEEEEECSSSCEEEEECCCSCSS-CEEEEEEEECTTSCEEEEEEE-----------------ETTSEEEEEESSCS
T ss_pred eCCCcEEEEEeccccchhhhccccccC-CCceEEEcccCCCCCCeEEEe-----------------cCCCcEEEEecCCC
Confidence 788889999998877666654322100 001111111111 14443 34588889998887
Q ss_pred ---cEEeeecCCCCCC----------CCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--e
Q 040693 288 ---NVLWSTADPSNGT----------APGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--S 350 (382)
Q Consensus 288 ---~~~W~~~~~~~~~----------~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~ 350 (382)
+.+.......... ....+.+ ++.+++.++ .+|.|..+|..+++.+.++............ .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~ 326 (368)
T 3mmy_A 249 NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVG--SDGRFSFWDKDARTKLKTSEQLDQPISACCFNHN 326 (368)
T ss_dssp CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEE--TTSCEEEEETTTTEEEEECCCCSSCEEEEEECTT
T ss_pred CccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEc--cCCeEEEEECCCCcEEEEecCCCCCceEEEECCC
Confidence 4444443322100 0112223 234666666 4999999999999998887654433334444 3
Q ss_pred CCEEEEEeCcee
Q 040693 351 NGCIYMGNGYKV 362 (382)
Q Consensus 351 ~g~lyv~~~~g~ 362 (382)
+..|..++.++.
T Consensus 327 g~~l~~~s~d~~ 338 (368)
T 3mmy_A 327 GNIFAYASSYDW 338 (368)
T ss_dssp SSCEEEEECCCS
T ss_pred CCeEEEEecccc
Confidence 445555666654
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-05 Score=74.09 Aligned_cols=151 Identities=10% Similarity=-0.070 Sum_probs=92.8
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+..|++++.|+.+..+|..+++.+..+..+-. .......+ ++..++.+ ..++.|..+|
T Consensus 210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~----~~v~~~~~sd~~~l~s~-----------------~~d~~v~vwd 268 (450)
T 2vdu_B 210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHK----HFVSSICCGKDYLLLSA-----------------GGDDKIFAWD 268 (450)
T ss_dssp CEEEEEEETTSCEEEEEESCTTCEEEECCCCS----SCEEEEEECSTTEEEEE-----------------ESSSEEEEEE
T ss_pred CcEEEEEcCCCcEEEEECCCCceeeeeecCCC----CceEEEEECCCCEEEEE-----------------eCCCeEEEEE
Confidence 35788888899999999999988766432211 12222222 55666655 3458899999
Q ss_pred CCCCcEEeeecCCC-----------------------CCCCCcceEE--eCCEEEEeeecCCCcEEEEeC--CCC---cE
Q 040693 284 ASNGNVLWSTADPS-----------------------NGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDV--KTG---KI 333 (382)
Q Consensus 284 ~~tG~~~W~~~~~~-----------------------~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~--~tG---~i 333 (382)
.++|+.+-...... .......+.. ++..++++.. .++.|..+|. .++ +.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~-~d~~i~iw~~~~~~~~~l~~ 347 (450)
T 2vdu_B 269 WKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVE-ATKCIIILEMSEKQKGDLAL 347 (450)
T ss_dssp TTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEET-TCSEEEEEEECSSSTTCEEE
T ss_pred CCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEEC-CCCeEEEEEeccCCCCceee
Confidence 99999887765321 0001111222 2457777662 3788999998 565 44
Q ss_pred eEEEecCCceecceEEeCCEEEEEeCc-------eeEeecCCccCCCCCeEE
Q 040693 334 LWSYDTGATIYGGASVSNGCIYMGNGY-------KVTVGFGNKNFTSGTSLY 378 (382)
Q Consensus 334 lw~~~~~~~~~~~p~~~~g~lyv~~~~-------g~~~~~~~~~~~~g~~l~ 378 (382)
+-.+... .......+..+.++++... ...+.+|.++..+|+..|
T Consensus 348 ~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~~ 398 (450)
T 2vdu_B 348 KQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVV 398 (450)
T ss_dssp EEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEE
T ss_pred ccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEEE
Confidence 5555544 3344555666788887543 223567888887776543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00027 Score=64.33 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=59.4
Q ss_pred CCceEEEEECC-CCcE---EeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE
Q 040693 275 IAGGWVAMDAS-NGNV---LWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV 349 (382)
Q Consensus 275 ~~g~v~a~d~~-tG~~---~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~ 349 (382)
..+.|+.+|.. +|+. .-...... .....+.++ ++.+|+++ .+.|..+|++ |+.+.++..+.. ..+.++
T Consensus 191 ~~~~i~~~~~~~~g~~~~~~~~~~~~~--~~p~~i~~d~~G~l~v~~---~~~v~~~~~~-g~~~~~~~~~~~-~~~~~f 263 (296)
T 3e5z_A 191 GDNATHRYCLNARGETEYQGVHFTVEP--GKTDGLRVDAGGLIWASA---GDGVHVLTPD-GDELGRVLTPQT-TSNLCF 263 (296)
T ss_dssp TTTEEEEEEECSSSCEEEEEEEECCSS--SCCCSEEEBTTSCEEEEE---TTEEEEECTT-SCEEEEEECSSC-CCEEEE
T ss_pred CCCeEEEEEECCCCcCcCCCeEeeCCC--CCCCeEEECCCCCEEEEc---CCeEEEECCC-CCEEEEEECCCC-ceeEEE
Confidence 34779999986 6765 21221111 112234454 57889888 7899999987 999888887765 444455
Q ss_pred e---CCEEEEEeCceeEeecCCccCCCCCe
Q 040693 350 S---NGCIYMGNGYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 350 ~---~g~lyv~~~~g~~~~~~~~~~~~g~~ 376 (382)
. ++.||+++..+ +|.++.++.++
T Consensus 264 ~~~d~~~L~v~t~~~----l~~~~~~~~~~ 289 (296)
T 3e5z_A 264 GGPEGRTLYMTVSTE----FWSIETNVRGL 289 (296)
T ss_dssp ESTTSCEEEEEETTE----EEEEECSCCBC
T ss_pred ECCCCCEEEEEcCCe----EEEEEcccccc
Confidence 2 24799998763 57777777654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00019 Score=78.76 Aligned_cols=223 Identities=13% Similarity=0.044 Sum_probs=137.1
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+|+.+.+..... ..+ ....+.+++..++.+..+
T Consensus 636 d~~i~vw~~~~~~~~~~~~~h~-----------~~v--~~~~~s~~~~~l~s~~~d------------------------ 678 (1249)
T 3sfz_A 636 DKTLQVFKAETGEKLLDIKAHE-----------DEV--LCCAFSSDDSYIATCSAD------------------------ 678 (1249)
T ss_dssp TSCEEEEETTTCCEEEEECCCS-----------SCE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEECCCCCEEEEeccCC-----------CCE--EEEEEecCCCEEEEEeCC------------------------
Confidence 8899999999999888765311 111 235677776777776543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+|+.+..+......++ -..+..++ ....+++++.
T Consensus 679 ---------~~v~vwd~~~~~~~~~~~~~~~~v~---------------------------~~~~~~~~-~~~~l~sg~~ 721 (1249)
T 3sfz_A 679 ---------KKVKIWDSATGKLVHTYDEHSEQVN---------------------------CCHFTNKS-NHLLLATGSN 721 (1249)
T ss_dssp ---------SEEEEEETTTCCEEEEEECCSSCEE---------------------------EEEECSSS-SCCEEEEEET
T ss_pred ---------CeEEEEECCCCceEEEEcCCCCcEE---------------------------EEEEecCC-CceEEEEEeC
Confidence 8999999999999988875433211 01111111 2456778888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+..+|..+|+.+....... ........ ++..++.+ ..++.|..+|..+++...
T Consensus 722 d~~v~vwd~~~~~~~~~~~~h~-----~~v~~~~~sp~~~~l~s~-----------------s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 722 DFFLKLWDLNQKECRNTMFGHT-----NSVNHCRFSPDDELLASC-----------------SADGTLRLWDVRSANERK 779 (1249)
T ss_dssp TSCEEEEETTSSSEEEEECCCS-----SCEEEEEECSSTTEEEEE-----------------ESSSEEEEEEGGGTEEEE
T ss_pred CCeEEEEECCCcchhheecCCC-----CCEEEEEEecCCCEEEEE-----------------ECCCeEEEEeCCCCcccc
Confidence 9999999999999887765321 12222222 45556655 345889999999998887
Q ss_pred eecCCCCC-------------CCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc-eecceEE--eCCEEE
Q 040693 292 STADPSNG-------------TAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT-IYGGASV--SNGCIY 355 (382)
Q Consensus 292 ~~~~~~~~-------------~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~-~~~~p~~--~~g~ly 355 (382)
........ .......-++..+++++ ++.+..+|..+++.+.....+.. ......+ .+..++
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~---~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 856 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA---KNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAV 856 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE---TTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEE
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEc---CCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEE
Confidence 76543210 00111111345666655 79999999999999888865432 2222222 344444
Q ss_pred EEeCceeEeecCCccCCCCCeEE
Q 040693 356 MGNGYKVTVGFGNKNFTSGTSLY 378 (382)
Q Consensus 356 v~~~~g~~~~~~~~~~~~g~~l~ 378 (382)
+++.+|. +.+|.++ +++.+.
T Consensus 857 ~~~~dg~-v~vwd~~--~~~~~~ 876 (1249)
T 3sfz_A 857 IALSQYC-VELWNID--SRLKVA 876 (1249)
T ss_dssp EECSSSC-EEEEETT--TTEEEE
T ss_pred EEeCCCe-EEEEEcC--CCceee
Confidence 4545543 4555443 344443
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.30 E-value=0.00014 Score=64.84 Aligned_cols=138 Identities=14% Similarity=0.047 Sum_probs=75.9
Q ss_pred EEEE-ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee-CCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 208 VVAV-QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD-ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 208 v~~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
+++. ..++.++.+|..+.......... .....+.+++ ++.+|++.. ..+.|..+|+.
T Consensus 121 l~v~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~p~~i~~~~~g~l~v~~~----------------~~~~i~~~~~~ 179 (270)
T 1rwi_B 121 VYVADRGNNRVVKLAAGSKTQTVLPFTG-----LNDPDGVAVDNSGNVYVTDT----------------DNNRVVKLEAE 179 (270)
T ss_dssp EEEEEGGGTEEEEECTTCCSCEECCCCS-----CCSCCCEEECTTCCEEEEEG----------------GGTEEEEECTT
T ss_pred EEEEECCCCEEEEEECCCceeEeecccc-----CCCceeEEEeCCCCEEEEEC----------------CCCEEEEEecC
Confidence 4444 55678999986655443322111 0112233333 466888632 23679999988
Q ss_pred CCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEE-eCCEEEEEeCcee
Q 040693 286 NGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASV-SNGCIYMGNGYKV 362 (382)
Q Consensus 286 tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~-~~g~lyv~~~~g~ 362 (382)
+++......... .....+.++ ++.+|+++. .++.|+.+|+++.. .......+ ......++ .+|+||+++....
T Consensus 180 ~~~~~~~~~~~~--~~p~~i~~d~~g~l~v~~~-~~~~v~~~~~~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 180 SNNQVVLPFTDI--TAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp TCCEEECCCSSC--CSEEEEEECTTCCEEEEET-TTSCEEEECTTCSC-CEECCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred CCceEeecccCC--CCceEEEECCCCCEEEEEC-CCCcEEEEcCCCCc-ceeeccCCCCCceeEEECCCCCEEEEECCCC
Confidence 776543322111 112234454 468888874 46789999987543 33333222 11223334 3688999987665
Q ss_pred EeecCCcc
Q 040693 363 TVGFGNKN 370 (382)
Q Consensus 363 ~~~~~~~~ 370 (382)
.+.+|.++
T Consensus 256 ~v~~~~~~ 263 (270)
T 1rwi_B 256 RVVKLTSL 263 (270)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 55555554
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00017 Score=68.45 Aligned_cols=144 Identities=12% Similarity=0.017 Sum_probs=86.1
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCc---EEE
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSG---FAW 218 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g---~l~ 218 (382)
++.|..+|..+++.+.++....... +......-..+.+++ ...++++..++ .+.
T Consensus 187 dg~v~iwd~~~~~~~~~~~~~~~~~---------------------~~~~~v~~~~~~~~~--~~~l~~~~~d~~~~~i~ 243 (416)
T 2pm9_A 187 SNFASIWDLKAKKEVIHLSYTSPNS---------------------GIKQQLSVVEWHPKN--STRVATATGSDNDPSIL 243 (416)
T ss_dssp SSCEEEEETTTTEEEEEECCCCCSS---------------------CCCCCEEEEEECSSC--TTEEEEEECCSSSCCCC
T ss_pred CCCEEEEECCCCCcceEEecccccc---------------------ccCCceEEEEECCCC--CCEEEEEECCCCCceEE
Confidence 3889999999999988886653100 000111112222333 35777888787 999
Q ss_pred EEeCCCC-CeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 219 ALDRDSG-SLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 219 ald~~tG-~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
.+|..++ +.+..+.... ......... ++..++.+ ..++.|..+|.++++.+.+..
T Consensus 244 ~~d~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~l~s~-----------------~~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 244 IWDLRNANTPLQTLNQGH----QKGILSLDWCHQDEHLLLSS-----------------GRDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp EEETTSTTSCSBCCCSCC----SSCEEEEEECSSCSSCEEEE-----------------ESSSEEEEECSSSCCEEEEEE
T ss_pred EEeCCCCCCCcEEeecCc----cCceeEEEeCCCCCCeEEEE-----------------eCCCCEEEeeCCCCccceeec
Confidence 9999987 4444433111 112222222 34455554 345889999999999998877
Q ss_pred CCCCCCCCcceEEe--C-CEEEEeeecCCCcEEEEeCCCCcE
Q 040693 295 DPSNGTAPGPVTVA--N-GVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 295 ~~~~~~~~~~~~~~--~-~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
...... ..+.+. + .+++.++ .++.|..+|..+++.
T Consensus 303 ~~~~~v--~~~~~s~~~~~~l~s~~--~d~~i~iw~~~~~~~ 340 (416)
T 2pm9_A 303 ARGNWC--FKTKFAPEAPDLFACAS--FDNKIEVQTLQNLTN 340 (416)
T ss_dssp CSSSCC--CCEEECTTCTTEEEECC--SSSEEEEEESCCCCC
T ss_pred CCCCce--EEEEECCCCCCEEEEEe--cCCcEEEEEccCCCC
Confidence 544322 223332 3 4566655 489999999987664
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=0.00032 Score=66.06 Aligned_cols=222 Identities=14% Similarity=0.045 Sum_probs=125.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeC---CCCeEEEEcCCCCCCCcchhhcccccCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDP---IRNHVYIATGNLYSVPLHIRQCQEENNQTTPT 130 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (382)
++.|..+|..+++.+.......... ...+.+ +...++++..+
T Consensus 121 d~~i~iwd~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~--------------------- 165 (408)
T 4a11_B 121 DKTLKVWDTNTLQTADVFNFEETVY--------------SHHMSPVSTKHCLVAVGTRG--------------------- 165 (408)
T ss_dssp TSEEEEEETTTTEEEEEEECSSCEE--------------EEEECSSCSSCCEEEEEESS---------------------
T ss_pred CCeEEEeeCCCCccceeccCCCcee--------------eeEeecCCCCCcEEEEEcCC---------------------
Confidence 8899999999999998887532211 111221 22355555443
Q ss_pred CCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEE
Q 040693 131 SPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVA 210 (382)
Q Consensus 131 ~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~ 210 (382)
+.|..+|..+++.+..+......+ .-.....++ ..++++
T Consensus 166 ------------~~v~~~d~~~~~~~~~~~~~~~~v---------------------------~~~~~~~~~--~~ll~~ 204 (408)
T 4a11_B 166 ------------PKVQLCDLKSGSCSHILQGHRQEI---------------------------LAVSWSPRY--DYILAT 204 (408)
T ss_dssp ------------SSEEEEESSSSCCCEEECCCCSCE---------------------------EEEEECSSC--TTEEEE
T ss_pred ------------CeEEEEeCCCcceeeeecCCCCcE---------------------------EEEEECCCC--CcEEEE
Confidence 889999999999887765432211 111122222 336778
Q ss_pred EccCcEEEEEeCCCCC-eeeeeccCCC----------CCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCc
Q 040693 211 VQKSGFAWALDRDSGS-LIWSMEAGPG----------GLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAG 277 (382)
Q Consensus 211 ~~~~g~l~ald~~tG~-~~W~~~~~~~----------~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g 277 (382)
+..++.+..+|..+++ .+...+.... ............ ++..++++ ..++
T Consensus 205 ~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----------------~~dg 267 (408)
T 4a11_B 205 ASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTV-----------------GTDN 267 (408)
T ss_dssp EETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEE-----------------ETTS
T ss_pred EcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEe-----------------cCCC
Confidence 8899999999998876 3332221100 000111122222 44455554 3457
Q ss_pred eEEEEECCCCcEEeeecCCCCC--CCCcceEE---eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eC
Q 040693 278 GWVAMDASNGNVLWSTADPSNG--TAPGPVTV---ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SN 351 (382)
Q Consensus 278 ~v~a~d~~tG~~~W~~~~~~~~--~~~~~~~~---~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~ 351 (382)
.|..+|..+++........... ........ .++.+++... ++.|..+|..+++.+.++...........+ .+
T Consensus 268 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~ 345 (408)
T 4a11_B 268 RMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPY--GSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSN 345 (408)
T ss_dssp CEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEE--TTEEEEEETTTCCEEEEECCCSSCEEEEEEETT
T ss_pred eEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEec--CCEEEEEECcCCcceeeeccCCCeEEEEEEcCC
Confidence 8999999999876554322110 01111111 1234444443 899999999999999988754443334444 34
Q ss_pred CE-EEEEeCceeEeecCCccC
Q 040693 352 GC-IYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 352 g~-lyv~~~~g~~~~~~~~~~ 371 (382)
++ |+.++.+|. +.+|.++.
T Consensus 346 ~~~l~s~~~dg~-i~iw~~~~ 365 (408)
T 4a11_B 346 FQELYSGSRDCN-ILAWVPSL 365 (408)
T ss_dssp TTEEEEEETTSC-EEEEEECC
T ss_pred CCEEEEECCCCe-EEEEeCCC
Confidence 44 544555554 55665544
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=98.26 E-value=6.7e-05 Score=70.03 Aligned_cols=181 Identities=11% Similarity=0.015 Sum_probs=104.7
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++++..-...+... ...+ ....+.+++..++++..+
T Consensus 73 dg~i~vwd~~~~~~~~~~~~~~~---------~~~v--~~~~~~~~~~~l~~~~~d------------------------ 117 (372)
T 1k8k_C 73 DRNAYVWTLKGRTWKPTLVILRI---------NRAA--RCVRWAPNEKKFAVGSGS------------------------ 117 (372)
T ss_dssp TSCEEEEEEETTEEEEEEECCCC---------SSCE--EEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEECCCCeeeeeEEeecC---------CCce--eEEEECCCCCEEEEEeCC------------------------
Confidence 88999999989886655543211 0011 134566666677776643
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++..+........ ......-..+..+ +..++++..
T Consensus 118 ---------~~v~i~d~~~~~~~~~~~~~~~~-----------------------~~~~i~~~~~~~~---~~~l~~~~~ 162 (372)
T 1k8k_C 118 ---------RVISICYFEQENDWWVCKHIKKP-----------------------IRSTVLSLDWHPN---SVLLAAGSC 162 (372)
T ss_dssp ---------SSEEEEEEETTTTEEEEEEECTT-----------------------CCSCEEEEEECTT---SSEEEEEET
T ss_pred ---------CEEEEEEecCCCcceeeeeeecc-----------------------cCCCeeEEEEcCC---CCEEEEEcC
Confidence 77888887777755543322110 0011111122222 457888888
Q ss_pred CcEEEEEeC------------------CCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCC
Q 040693 214 SGFAWALDR------------------DSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNS 273 (382)
Q Consensus 214 ~g~l~ald~------------------~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~ 273 (382)
++.+..+|. .+++.+-.+.... ........ ++..++.+
T Consensus 163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~----------------- 220 (372)
T 1k8k_C 163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC-----GWVHGVCFSANGSRVAWV----------------- 220 (372)
T ss_dssp TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS-----SCEEEEEECSSSSEEEEE-----------------
T ss_pred CCCEEEEEcccccccccccccccccccchhhheEecCCCC-----CeEEEEEECCCCCEEEEE-----------------
Confidence 999999994 3566665554211 11222222 44556655
Q ss_pred CCCceEEEEECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCC
Q 040693 274 TIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKT 330 (382)
Q Consensus 274 ~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~t 330 (382)
..++.|..+|.++++.+.+....... ...+.+ .++.++++. .++.++.+|..+
T Consensus 221 ~~d~~i~i~d~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~--~d~~i~i~~~~~ 274 (372)
T 1k8k_C 221 SHDSTVCLADADKKMAVATLASETLP--LLAVTFITESSLVAAG--HDCFPVLFTYDS 274 (372)
T ss_dssp ETTTEEEEEEGGGTTEEEEEECSSCC--EEEEEEEETTEEEEEE--TTSSCEEEEEET
T ss_pred eCCCEEEEEECCCCceeEEEccCCCC--eEEEEEecCCCEEEEE--eCCeEEEEEccC
Confidence 34588999999999999888755421 122222 355555544 388888888877
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.2e-05 Score=69.81 Aligned_cols=113 Identities=10% Similarity=-0.046 Sum_probs=65.6
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC-CCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG-GGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..|+++..++.+..+|..+++............. ......... ....+++. ..++.|..+
T Consensus 257 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~i~v~ 319 (408)
T 4a11_B 257 GLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFV-----------------PYGSTIAVY 319 (408)
T ss_dssp SSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEE-----------------EETTEEEEE
T ss_pred CCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEE-----------------ecCCEEEEE
Confidence 46788888899999999999987655432211000 111111111 23334443 234789999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
|..+++.+.+....... ...+.+ ++.+++.++ .+|.|...|.++++.+-..+
T Consensus 320 d~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~s~~--~dg~i~iw~~~~~~~~~~~~ 373 (408)
T 4a11_B 320 TVYSGEQITMLKGHYKT--VDCCVFQSNFQELYSGS--RDCNILAWVPSLYEPVPDDD 373 (408)
T ss_dssp ETTTCCEEEEECCCSSC--EEEEEEETTTTEEEEEE--TTSCEEEEEECC--------
T ss_pred ECcCCcceeeeccCCCe--EEEEEEcCCCCEEEEEC--CCCeEEEEeCCCCCccCCCC
Confidence 99999999888754422 122223 245666666 48999999999998776544
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00025 Score=67.70 Aligned_cols=192 Identities=11% Similarity=0.106 Sum_probs=105.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCC-----cCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEY-----AGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTT 128 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
++.+..+|..+|+.+.+..........+... .....+..+..+.+++..++.+..
T Consensus 84 ~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~-------------------- 143 (393)
T 1erj_A 84 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE-------------------- 143 (393)
T ss_dssp BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET--------------------
T ss_pred CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcC--------------------
Confidence 5678888999999887764321110000000 001111123456666666666554
Q ss_pred CCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEE
Q 040693 129 PTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIV 208 (382)
Q Consensus 129 ~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v 208 (382)
++.|..+|..+++.+-..+.....+. -..+..+ +..+
T Consensus 144 -------------d~~i~iwd~~~~~~~~~~~~h~~~v~---------------------------~~~~~p~---~~~l 180 (393)
T 1erj_A 144 -------------DRLIRIWDIENRKIVMILQGHEQDIY---------------------------SLDYFPS---GDKL 180 (393)
T ss_dssp -------------TSCEEEEETTTTEEEEEECCCSSCEE---------------------------EEEECTT---SSEE
T ss_pred -------------CCeEEEEECCCCcEEEEEccCCCCEE---------------------------EEEEcCC---CCEE
Confidence 38899999999988766543322111 1111222 4678
Q ss_pred EEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 209 VAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 209 ~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
+++..|+.+..+|..+|+....+.... ....... ++..+..+ ..++.|..+|.+
T Consensus 181 ~s~s~d~~v~iwd~~~~~~~~~~~~~~------~v~~~~~~~~~~~~l~~~-----------------s~d~~v~iwd~~ 237 (393)
T 1erj_A 181 VSGSGDRTVRIWDLRTGQCSLTLSIED------GVTTVAVSPGDGKYIAAG-----------------SLDRAVRVWDSE 237 (393)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEECSTTCCEEEEE-----------------ETTSCEEEEETT
T ss_pred EEecCCCcEEEEECCCCeeEEEEEcCC------CcEEEEEECCCCCEEEEE-----------------cCCCcEEEEECC
Confidence 888899999999999999887776432 1111111 33444444 345889999999
Q ss_pred CCcEEeeecCCCCC-----CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcE
Q 040693 286 NGNVLWSTADPSNG-----TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 286 tG~~~W~~~~~~~~-----~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
+|+.+-+....... .....+.+ ++..++.++ .++.|...|..+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s--~d~~v~~wd~~~~~~ 290 (393)
T 1erj_A 238 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANN 290 (393)
T ss_dssp TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEC-----
T ss_pred CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe--CCCEEEEEECCCCCC
Confidence 99987766422110 01112223 245666666 489999999876543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00023 Score=69.13 Aligned_cols=110 Identities=16% Similarity=0.083 Sum_probs=69.4
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeee----eeccCCCCCCCCcccceee--e---CCeEEEEecCccccccccCCCCCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIW----SMEAGPGGLGGGAMWGAAT--D---ERRIYTNIANSQHKNFNLKPSKNSTI 275 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W----~~~~~~~~~~g~~~~~~~~--~---~~~v~~~~~~~~~~~~~~~~~~~~~~ 275 (382)
+..|+++..++.++.+|..+++..- .+... ........+ + +..++.+ ..
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~sp~~~~~~~l~s~-----------------~~ 218 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-----VSMLTDVHLIKDSDGHQFIITS-----------------DR 218 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-----SSCEEEEEEEECTTSCEEEEEE-----------------ET
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecc-----cCceEEEEEcCCCCCCcEEEEE-----------------cC
Confidence 3678888889999999998887543 22111 111222222 3 3344444 34
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
++.|..+|..+++.+.+....... ....+.+ ++.+++.++ .++.|..+|..+|+.+-.++.
T Consensus 219 d~~i~vwd~~~~~~~~~~~~~h~~-~v~~~~~sd~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~ 280 (450)
T 2vdu_B 219 DEHIKISHYPQCFIVDKWLFGHKH-FVSSICCGKDYLLLSAG--GDDKIFAWDWKTGKNLSTFDY 280 (450)
T ss_dssp TSCEEEEEESCTTCEEEECCCCSS-CEEEEEECSTTEEEEEE--SSSEEEEEETTTCCEEEEEEC
T ss_pred CCcEEEEECCCCceeeeeecCCCC-ceEEEEECCCCEEEEEe--CCCeEEEEECCCCcEeeeecc
Confidence 578999999999887664322111 1122222 456777776 499999999999999888864
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00048 Score=62.03 Aligned_cols=140 Identities=11% Similarity=0.083 Sum_probs=77.7
Q ss_pred EEEEE-ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 207 IVVAV-QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 207 ~v~~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
.+++. ..++.++.+|. +|+.... .... .......... .++.+|++.. ..+.|..+|+
T Consensus 153 ~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~---~~~~~~~i~~~~~g~l~v~~~----------------~~~~i~~~~~ 211 (299)
T 2z2n_A 153 ALWFTENQNNAIGRITE-SGDITEF-KIPT---PASGPVGITKGNDDALWFVEI----------------IGNKIGRITT 211 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEE-ECSS---TTCCEEEEEECTTSSEEEEET----------------TTTEEEEECT
T ss_pred CEEEEeCCCCEEEEEcC-CCcEEEe-eCCC---CCCcceeEEECCCCCEEEEcc----------------CCceEEEECC
Confidence 45554 45678999999 7877643 2211 1112223333 3467888632 2467999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC--ceecceEEeCCEEEEEeCce
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA--TIYGGASVSNGCIYMGNGYK 361 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~--~~~~~p~~~~g~lyv~~~~g 361 (382)
+|+..- +..+........+.++ ++.+|+++. ..+.|+.+|+ +|++. .+..+. ....+.++.+++||+++..+
T Consensus 212 -~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~g~l~v~~~~~ 286 (299)
T 2z2n_A 212 -SGEITE-FKIPTPNARPHAITAGAGIDLWFTEW-GANKIGRLTS-NNIIE-EYPIQIKSAEPHGICFDGETIWFAMECD 286 (299)
T ss_dssp -TCCEEE-EECSSTTCCEEEEEECSTTCEEEEET-TTTEEEEEET-TTEEE-EEECSSSSCCEEEEEECSSCEEEEETTT
T ss_pred -CCcEEE-EECCCCCCCceeEEECCCCCEEEecc-CCceEEEECC-CCceE-EEeCCCCCCccceEEecCCCEEEEecCC
Confidence 887542 3232211112234444 567888863 3688999998 56543 443332 22223333789999997654
Q ss_pred eEeecCCccCCCCC
Q 040693 362 VTVGFGNKNFTSGT 375 (382)
Q Consensus 362 ~~~~~~~~~~~~g~ 375 (382)
. ++.+++++++
T Consensus 287 ~---l~~~~~~~~~ 297 (299)
T 2z2n_A 287 K---IGKLTLIKDN 297 (299)
T ss_dssp E---EEEEEEC---
T ss_pred c---EEEEEcCccc
Confidence 4 3456666654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00013 Score=67.44 Aligned_cols=226 Identities=12% Similarity=0.097 Sum_probs=128.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCC---CCeEEEEcCCCCCCCcchhhcccccCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPI---RNHVYIATGNLYSVPLHIRQCQEENNQTTPT 130 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (382)
++.|..+|.++++..-........ .+ ....+.++ +..++.+..+
T Consensus 43 d~~v~iw~~~~~~~~~~~~~~~~~----------~v--~~~~~~~~~~~~~~l~~~~~d--------------------- 89 (357)
T 3i2n_A 43 TGVIQLYEIQHGDLKLLREIEKAK----------PI--KCGTFGATSLQQRYLATGDFG--------------------- 89 (357)
T ss_dssp CEEEEEEEECSSSEEEEEEEEESS----------CE--EEEECTTCCTTTCCEEEEETT---------------------
T ss_pred CcEEEEEeCCCCcccceeeecccC----------cE--EEEEEcCCCCCCceEEEecCC---------------------
Confidence 689999999999876554432110 00 12344444 3566665543
Q ss_pred CCCCCCCCCCCcceEEEEECCCCc-EEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEE
Q 040693 131 SPDKCIEPENHSNSLLALDLDTGK-IVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVV 209 (382)
Q Consensus 131 ~~~~~~~~~~~~g~v~ald~~tG~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~ 209 (382)
+.|..+|..+++ .+..+......+..... .|.+ .+. ..+..++
T Consensus 90 ------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--------------------~~~~-~~s---~~~~~l~ 133 (357)
T 3i2n_A 90 ------------GNLHIWNLEAPEMPVYSVKGHKEIINAIDG--------------------IGGL-GIG---EGAPEIV 133 (357)
T ss_dssp ------------SCEEEECTTSCSSCSEEECCCSSCEEEEEE--------------------ESGG-GCC----CCCEEE
T ss_pred ------------CeEEEEeCCCCCccEEEEEecccceEEEee--------------------cccc-ccC---CCccEEE
Confidence 889999999988 66665533221110000 0000 000 1145788
Q ss_pred EEccCcEEEEEeCCCCC-eeeeeccCCCCCCCCccccee------eeCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 210 AVQKSGFAWALDRDSGS-LIWSMEAGPGGLGGGAMWGAA------TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 210 ~~~~~g~l~ald~~tG~-~~W~~~~~~~~~~g~~~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
++..++.+..+|..+++ .+..+...... .....+... .++..++++ ..++.|..+
T Consensus 134 ~~~~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~l~~~-----------------~~d~~i~i~ 195 (357)
T 3i2n_A 134 TGSRDGTVKVWDPRQKDDPVANMEPVQGE-NKRDCWTVAFGNAYNQEERVVCAG-----------------YDNGDIKLF 195 (357)
T ss_dssp EEETTSCEEEECTTSCSSCSEEECCCTTS-CCCCEEEEEEECCCC-CCCEEEEE-----------------ETTSEEEEE
T ss_pred EEeCCCeEEEEeCCCCCCcceeccccCCC-CCCceEEEEEEeccCCCCCEEEEE-----------------ccCCeEEEE
Confidence 88899999999999987 55555432210 011222221 145555555 345889999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE-----eCCEEEEeeecCCCcEEEEeCCCCcEeEEEe-----cCCceecceEE-eC
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV-----ANGVLFGGSTYRQGPIYAMDVKTGKILWSYD-----TGATIYGGASV-SN 351 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~-----~~~~~~~~p~~-~~ 351 (382)
|.++++..+....... ...+.+ .++.+++++ .++.|..+|..+++.+..+. ........... .+
T Consensus 196 d~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 270 (357)
T 3i2n_A 196 DLRNMALRWETNIKNG---VCSLEFDRKDISMNKLVATS--LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQ 270 (357)
T ss_dssp ETTTTEEEEEEECSSC---EEEEEESCSSSSCCEEEEEE--STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETT
T ss_pred ECccCceeeecCCCCc---eEEEEcCCCCCCCCEEEEEC--CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCC
Confidence 9999999887665432 222333 346777776 48999999998887766554 22222333333 33
Q ss_pred CE-EEEEeCceeEeecCCccC
Q 040693 352 GC-IYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 352 g~-lyv~~~~g~~~~~~~~~~ 371 (382)
++ ++++.+....+.+|.+..
T Consensus 271 ~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 271 NRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp EEEEEEEEETTSEEEEEEEEC
T ss_pred CCcEEEEEeCCCcEEEeecCC
Confidence 44 444433333466776654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00033 Score=64.35 Aligned_cols=149 Identities=12% Similarity=0.042 Sum_probs=81.4
Q ss_pred cEEEEEc-cCcEEEEEeCCC-CCeeeee----ccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCc
Q 040693 206 DIVVAVQ-KSGFAWALDRDS-GSLIWSM----EAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAG 277 (382)
Q Consensus 206 ~~v~~~~-~~g~l~ald~~t-G~~~W~~----~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g 277 (382)
..+++.. .++.+..+|..+ |++.-.. .... +.......+ ++..+|+.. ...+
T Consensus 141 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~pdg~~l~~~~----------------~~~~ 200 (343)
T 1ri6_A 141 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE----GAGPRHMVFHPNEQYAYCVN----------------ELNS 200 (343)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST----TCCEEEEEECTTSSEEEEEE----------------TTTT
T ss_pred CEEEEecCCCCEEEEEEecCCCceeeecccccccCC----CCCcceEEECCCCCEEEEEe----------------CCCC
Confidence 4455554 788999999987 7654322 2111 111111222 556677653 2347
Q ss_pred eEEEEEC--CCCcEEeeec---CCCC---CCCCcceEEe--CCEEEEeeecCCCcEEEEeCC--CCc--EeEEEecCCce
Q 040693 278 GWVAMDA--SNGNVLWSTA---DPSN---GTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVK--TGK--ILWSYDTGATI 343 (382)
Q Consensus 278 ~v~a~d~--~tG~~~W~~~---~~~~---~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~--tG~--ilw~~~~~~~~ 343 (382)
.+..+|. .+|+...... .+.. ......+.+. +..+|+... .++.|..+|.+ +++ .+-..+....
T Consensus 201 ~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~-~~~~i~v~d~~~~~~~~~~~~~~~~~~~- 278 (343)
T 1ri6_A 201 SVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR-TASLITVFSVSEDGSVLSKEGFQPTETQ- 278 (343)
T ss_dssp EEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET-TTTEEEEEEECTTSCCEEEEEEEECSSS-
T ss_pred EEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEec-CCCEEEEEEEcCCCCceEEeeeecCCCc-
Confidence 7888888 4565533222 1111 0011123343 347776652 47889999987 443 3444444333
Q ss_pred ecceEE--eCCEEEEEeCceeEeecCCccCCCCCe
Q 040693 344 YGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 344 ~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~ 376 (382)
.....+ .+..||+++.....+.+|.++..+|+.
T Consensus 279 ~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~ 313 (343)
T 1ri6_A 279 PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 313 (343)
T ss_dssp CCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred cceEEECCCCCEEEEecCCCCeEEEEEEcCCCcee
Confidence 233344 345688888655567789899888854
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.20 E-value=8.1e-05 Score=68.06 Aligned_cols=84 Identities=7% Similarity=-0.025 Sum_probs=50.3
Q ss_pred CceEEEEECC-CCcEEee---ecCCCCC-CCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE
Q 040693 276 AGGWVAMDAS-NGNVLWS---TADPSNG-TAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV 349 (382)
Q Consensus 276 ~g~v~a~d~~-tG~~~W~---~~~~~~~-~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~ 349 (382)
.+.|..+|.+ +|+..-. ...+... .....+.++ ++.+|+++. .++.|+.+|+++|+.+..+..+.....+.++
T Consensus 197 ~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~-~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~ 275 (314)
T 1pjx_A 197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW-GSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF 275 (314)
T ss_dssp TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE-TTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEc-CCCEEEEEcCCCCcEeEEEeCCCCCceeEEE
Confidence 4678999876 5653211 1122110 011223344 577888764 3688999999989988877766433344444
Q ss_pred -eCCE-EEEEeCc
Q 040693 350 -SNGC-IYMGNGY 360 (382)
Q Consensus 350 -~~g~-lyv~~~~ 360 (382)
.+++ ||+++..
T Consensus 276 ~~dg~~l~v~~~~ 288 (314)
T 1pjx_A 276 KPQTKTIFVTEHE 288 (314)
T ss_dssp CTTSSEEEEEETT
T ss_pred CCCCCEEEEEeCC
Confidence 3455 9998865
|
| >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00011 Score=72.48 Aligned_cols=113 Identities=19% Similarity=0.240 Sum_probs=64.8
Q ss_pred ceEEEEECCCCc--EEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEE
Q 040693 143 NSLLALDLDTGK--IVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 143 g~v~ald~~tG~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
..|.|+|.++|+ ++|++.......-.+.+. -.-.|.+.++..|| .+.|+.+.. ++
T Consensus 292 ~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gq----------------g~h~~~vaDVDgDG--~dEIv~Gs~-----~i 348 (591)
T 2zux_A 292 TMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQ----------------GNHNLSIADVDGDG--KDEIIFGSM-----AV 348 (591)
T ss_dssp CEEEEEEEETTEEEEEEEEETTSTTCGGGSSC----------------CCSCCEEECCSSSS--SCEEEETTE-----EE
T ss_pred eEEEEEECCCCceEEEEEecCCCCCccccccc----------------CCCCCeeEeCCCCC--CceEEEeee-----EE
Confidence 569999998886 599998764311111110 11478888888888 666776653 56
Q ss_pred eCCCCCeeeeeccCCCCCCCCcccceeee----CCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCC
Q 040693 221 DRDSGSLIWSMEAGPGGLGGGAMWGAATD----ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
| .+|+.+|+....- +......-.+ +-.+|....+ . .........|++||+++|+....
T Consensus 349 D-~dG~~L~st~~gH----GDa~hv~dldP~r~GlEv~~~~E~-~------------~~~~G~~~~dA~tG~vlw~~~~~ 410 (591)
T 2zux_A 349 D-HDGKGMYSTGLGH----GDALHTGDLDPGRPGLEVFQVHED-K------------NAKYGLSFRDAATGKILWGVYAG 410 (591)
T ss_dssp C-TTSCEEEECSCCC----CSCEEEECCCTTSSSCEEEEECCC-T------------TSSCSEEEEETTTCCEEEEECCS
T ss_pred C-CCCCEeeeCCCCC----CCeeEEeecCCCCCCcEEEEEecC-C------------CCCCccEEEECCCCcEEEEcCCC
Confidence 7 5699999987531 1111111111 1123333111 0 11113444799999999998753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00026 Score=65.05 Aligned_cols=219 Identities=12% Similarity=0.032 Sum_probs=120.5
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
|+.|..+|..+++......... +.++........+.+++..++.+..+
T Consensus 60 D~~i~vWd~~~~~~~~~~~~~~--------l~~h~~~V~~~~~s~dg~~l~s~~~d------------------------ 107 (340)
T 4aow_A 60 DKTIIMWKLTRDETNYGIPQRA--------LRGHSHFVSDVVISSDGQFALSGSWD------------------------ 107 (340)
T ss_dssp TSCEEEEEECCSSSCSEEEEEE--------ECCCSSCEEEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEECCCCCcccceeeEE--------EeCCCCCEEEEEECCCCCEEEEEccc------------------------
Confidence 8889999887766544332210 00111111234566666666665543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..++...++............ ....... .+..++.+..
T Consensus 108 ---------~~i~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~---~~~~l~s~s~ 148 (340)
T 4aow_A 108 ---------GTLRLWDLTTGTTTRRFVGHTKDV---------------------------LSVAFSS---DNRQIVSGSR 148 (340)
T ss_dssp ---------SEEEEEETTTTEEEEEEECCSSCE---------------------------EEEEECT---TSSCEEEEET
T ss_pred ---------ccceEEeecccceeeeecCCCCce---------------------------eEEEEee---cCccceeecC
Confidence 788999988887777665543311 1111111 1456777888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--e-CCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--D-ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~-~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
|+.+..+|.......-...... ......... + ...++++. ..++.|..+|.++++.+
T Consensus 149 d~~~~~~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~s~----------------~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 149 DKTIKLWNTLGVCKYTVQDESH----SEWVSCVRFSPNSSNPIIVSC----------------GWDKLVKVWNLANCKLK 208 (340)
T ss_dssp TSCEEEECTTSCEEEEECSSSC----SSCEEEEEECSCSSSCEEEEE----------------ETTSCEEEEETTTTEEE
T ss_pred CCeEEEEEeCCCceEEEEeccc----cCcccceEEccCCCCcEEEEE----------------cCCCEEEEEECCCCcee
Confidence 8989988877554332222111 001111111 1 22233321 23577999999999988
Q ss_pred eeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCC
Q 040693 291 WSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGN 368 (382)
Q Consensus 291 W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~ 368 (382)
.+....... ...+.+ ++.+++.++ .++.|...|..+++.+..++....+..-....++.+++++.++. +.+|.
T Consensus 209 ~~~~~h~~~--v~~~~~s~~~~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~-i~iwd 283 (340)
T 4aow_A 209 TNHIGHTGY--LNTVTVSPDGSLCASGG--KDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPS-IKIWD 283 (340)
T ss_dssp EEECCCSSC--EEEEEECTTSSEEEEEE--TTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTE-EEEEE
T ss_pred eEecCCCCc--EEEEEECCCCCEEEEEe--CCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCE-EEEEE
Confidence 777644321 122233 245666666 48999999999999998887655433222223555555555544 34443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=98.17 E-value=9.3e-05 Score=68.66 Aligned_cols=187 Identities=7% Similarity=-0.035 Sum_probs=111.6
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCC----CCeEEEEcCCCCCCCcchhhcccccCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPI----RNHVYIATGNLYSVPLHIRQCQEENNQTTP 129 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 129 (382)
++.|..+|..+++.+........... ...+ ....+.++ +.+++.+..
T Consensus 43 ~~~v~vw~~~~~~~~~~~~~~~~~~~------~~~v--~~~~~~~~~~~~~~~l~~~~~--------------------- 93 (366)
T 3k26_A 43 SNRVTLYECHSQGEIRLLQSYVDADA------DENF--YTCAWTYDSNTSHPLLAVAGS--------------------- 93 (366)
T ss_dssp TTEEEEEEECGGGCEEEEEEEECSCT------TCCE--EEEEEEECTTTCCEEEEEEET---------------------
T ss_pred CCEEEEEEcCCCcEEEeeeeccccCC------CCcE--EEEEeccCCCCCCCEEEEecC---------------------
Confidence 77899999999998877654221100 0111 12334433 234555544
Q ss_pred CCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEE
Q 040693 130 TSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVV 209 (382)
Q Consensus 130 ~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~ 209 (382)
++.|..+|..+++.+.++......+. -...... .+..++
T Consensus 94 ------------dg~i~v~d~~~~~~~~~~~~~~~~i~---------------------------~~~~~~~--~~~~l~ 132 (366)
T 3k26_A 94 ------------RGIIRIINPITMQCIKHYVGHGNAIN---------------------------ELKFHPR--DPNLLL 132 (366)
T ss_dssp ------------TCEEEEECTTTCCEEEEEESCCSCEE---------------------------EEEECSS--CTTEEE
T ss_pred ------------CCEEEEEEchhceEeeeecCCCCcEE---------------------------EEEECCC--CCCEEE
Confidence 38999999999999988764332111 1111111 146788
Q ss_pred EEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCC
Q 040693 210 AVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG 287 (382)
Q Consensus 210 ~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG 287 (382)
++..++.+..+|..+++.+..+..-. ........... ++..++.+ ..++.|..+|.+++
T Consensus 133 s~~~dg~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~-----------------~~dg~i~i~d~~~~ 193 (366)
T 3k26_A 133 SVSKDHALRLWNIQTDTLVAIFGGVE--GHRDEVLSADYDLLGEKIMSC-----------------GMDHSLKLWRINSK 193 (366)
T ss_dssp EEETTSCEEEEETTTTEEEEEECSTT--SCSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEESCSH
T ss_pred EEeCCCeEEEEEeecCeEEEEecccc--cccCceeEEEECCCCCEEEEe-----------------cCCCCEEEEECCCC
Confidence 88899999999999999888773211 01112222222 45556555 34578999999988
Q ss_pred cEEeeecC----------------------------CCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcE
Q 040693 288 NVLWSTAD----------------------------PSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 288 ~~~W~~~~----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
+.+-.... .. .....+.+.+++++.++. ++.|..+|..+++.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 194 RMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR--NYVDCVRWLGDLILSKSC--ENAIVCWKPGKMED 263 (366)
T ss_dssp HHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS--SCCCEEEEETTEEEEECS--SSEEEEEEESSTTC
T ss_pred ccccccceeEEecCCCCcccccceeeccCccccccCCc--ceEEEEEEcCCEEEEEec--CCEEEEEeCCCccc
Confidence 75533221 11 112233344777777764 89999999887754
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00015 Score=68.24 Aligned_cols=178 Identities=14% Similarity=0.091 Sum_probs=99.6
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++|+.+-++.-.. ..+ ....+.+++..+++..+.
T Consensus 148 d~~i~iwd~~~~~~~~~~~~h~-----------~~V--~~~~~~~~~~~~l~s~s~------------------------ 190 (344)
T 4gqb_B 148 DICIKVWDLAQQVVLSSYRAHA-----------AQV--TCVAASPHKDSVFLSCSE------------------------ 190 (344)
T ss_dssp TSCEEEEETTTTEEEEEECCCS-----------SCE--EEEEECSSCTTEEEEEET------------------------
T ss_pred CCeEEEEECCCCcEEEEEcCcC-----------Cce--EEEEecCCCCCceeeecc------------------------
Confidence 8899999999999987764311 011 123444554444443322
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
++.|..+|..+++.+-++...... ....-.....++ ..+++++..
T Consensus 191 --------D~~v~iwd~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~p~~--~~~l~sg~~ 235 (344)
T 4gqb_B 191 --------DNRILLWDTRCPKPASQIGCSAPG-------------------------YLPTSLAWHPQQ--SEVFVFGDE 235 (344)
T ss_dssp --------TSCEEEEETTSSSCEEECC----C-------------------------CCEEEEEECSSC--TTEEEEEET
T ss_pred --------ccccccccccccceeeeeecceee-------------------------ccceeeeecCCC--CcceEEecc
Confidence 488999999999988776543321 011112222222 467778889
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCe-EEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERR-IYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~-v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
|+.+..+|..+++.+..+..-. ........ ++.. |..+ ..++.|..+|.++++..
T Consensus 236 dg~v~~wd~~~~~~~~~~~~h~-----~~v~~v~fsp~g~~~lasg-----------------s~D~~i~vwd~~~~~~~ 293 (344)
T 4gqb_B 236 NGTVSLVDTKSTSCVLSSAVHS-----QCVTGLVFSPHSVPFLASL-----------------SEDCSLAVLDSSLSELF 293 (344)
T ss_dssp TSEEEEEESCC--CCEEEECCS-----SCEEEEEECSSSSCCEEEE-----------------ETTSCEEEECTTCCEEE
T ss_pred CCcEEEEECCCCcEEEEEcCCC-----CCEEEEEEccCCCeEEEEE-----------------eCCCeEEEEECCCCcEE
Confidence 9999999999999988876321 12222222 3333 3333 34588999999999865
Q ss_pred eeecCCCCCCCCcceEE--eCCEEEE-eeecCCCcEEEEeCCC
Q 040693 291 WSTADPSNGTAPGPVTV--ANGVLFG-GSTYRQGPIYAMDVKT 330 (382)
Q Consensus 291 W~~~~~~~~~~~~~~~~--~~~~v~~-~~~~~~g~l~~ld~~t 330 (382)
- ...... ....+.+ ++..+++ ++ .++.|...+..+
T Consensus 294 ~-~~~H~~--~V~~v~~sp~~~~llas~s--~D~~v~~w~v~~ 331 (344)
T 4gqb_B 294 R-SQAHRD--FVRDATWSPLNHSLLTTVG--WDHQVVHHVVPT 331 (344)
T ss_dssp E-ECCCSS--CEEEEEECSSSTTEEEEEE--TTSCEEEEECCC
T ss_pred E-EcCCCC--CEEEEEEeCCCCeEEEEEc--CCCeEEEEECCC
Confidence 3 322211 1122223 2333443 34 477777666654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00071 Score=63.58 Aligned_cols=146 Identities=12% Similarity=0.146 Sum_probs=87.1
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee----eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT----DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
+..|++++.|+.+..+|.++|+.+-.+.... ........ ++..++.+ ..++.|.
T Consensus 166 ~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~-----~~v~~~~~~~~~~g~~l~sg-----------------s~Dg~v~ 223 (354)
T 2pbi_B 166 DMQILTASGDGTCALWDVESGQLLQSFHGHG-----ADVLCLDLAPSETGNTFVSG-----------------GCDKKAM 223 (354)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCS-----SCEEEEEECCCSSCCEEEEE-----------------ETTSCEE
T ss_pred CCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC-----CCeEEEEEEeCCCCCEEEEE-----------------eCCCeEE
Confidence 4578889999999999999999887765321 11111111 23455555 3458899
Q ss_pred EEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCce--ecceEE-eCCE-E
Q 040693 281 AMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATI--YGGASV-SNGC-I 354 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~--~~~p~~-~~g~-l 354 (382)
.+|.++|+.+-....... ....+.+ ++..++.++ .++.|..+|..+++.+-.+...... ..+..+ .+++ |
T Consensus 224 ~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 224 VWDMRSGQCVQAFETHES--DVNSVRYYPSGDAFASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp EEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred EEECCCCcEEEEecCCCC--CeEEEEEeCCCCEEEEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence 999999998877654432 1222333 245666666 4999999999988876655433211 112222 2344 4
Q ss_pred EEEeCceeEeecCCccCCCCCeEEE
Q 040693 355 YMGNGYKVTVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 355 yv~~~~g~~~~~~~~~~~~g~~l~~ 379 (382)
++++.++. +.+|.+ .+|+.+-.
T Consensus 300 ~~g~~d~~-i~vwd~--~~~~~~~~ 321 (354)
T 2pbi_B 300 FAGYNDYT-INVWDV--LKGSRVSI 321 (354)
T ss_dssp EEEETTSC-EEEEET--TTCSEEEE
T ss_pred EEEECCCc-EEEEEC--CCCceEEE
Confidence 44555544 455543 44665543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00055 Score=64.06 Aligned_cols=101 Identities=9% Similarity=0.083 Sum_probs=59.3
Q ss_pred CceEEEEECCCCcEEeeecCCCCC---CCCcceEE--eCCEEEEeeecC-CCcEEEEeC--CCCcE--eEEEecCCceec
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNG---TAPGPVTV--ANGVLFGGSTYR-QGPIYAMDV--KTGKI--LWSYDTGATIYG 345 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~---~~~~~~~~--~~~~v~~~~~~~-~g~l~~ld~--~tG~i--lw~~~~~~~~~~ 345 (382)
.+.|..+|..+|+........... .....+.+ ++..+|+... . .+.|..++. ++|+. +..... +....
T Consensus 232 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~-~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~ 309 (361)
T 3scy_A 232 GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR-LKADGVAIFKVDETNGTLTKVGYQLT-GIHPR 309 (361)
T ss_dssp TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC-SSSCEEEEEEECTTTCCEEEEEEEEC-SSCCC
T ss_pred CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC-CCCCEEEEEEEcCCCCcEEEeeEecC-CCCCc
Confidence 577999999988764443322110 01112333 3457887764 2 366666555 57774 444444 22222
Q ss_pred ceEE--eCCEEEEEeCceeEeecCCccCCCCCeEE
Q 040693 346 GASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLY 378 (382)
Q Consensus 346 ~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~ 378 (382)
...+ .+..||+++.....+.+|.+|..+|++..
T Consensus 310 ~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 310 NFIITPNGKYLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp EEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEECCCCcEee
Confidence 3333 34568888866666788999999998754
|
| >2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00021 Score=70.86 Aligned_cols=114 Identities=20% Similarity=0.210 Sum_probs=66.0
Q ss_pred ceEEEEECCCC--cEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEE
Q 040693 143 NSLLALDLDTG--KIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 143 g~v~ald~~tG--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
..|.|+|.++| +.+|++.........+.+. -.-.+.+.++..+| .+.|+.+. .++
T Consensus 296 ~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gq----------------g~H~~svaDVDGDG--~dEIv~Gs-----~~i 352 (620)
T 2zuy_A 296 TVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQ----------------GNHSLSVADVDGDG--KDEIIYGA-----MAV 352 (620)
T ss_dssp CEEEEEEEETTEEEEEEEEETTSTTCGGGTTC----------------CCSSCEEECCSSSS--SCEEEETT-----EEE
T ss_pred eeEEEEEccCCceeeeeEecCCCCcccccccc----------------cCcCceEEecCCCC--ceeEEEee-----eEE
Confidence 56899999888 4799998753211111110 11467888887777 66777765 367
Q ss_pred eCCCCCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCC
Q 040693 221 DRDSGSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
| .+|+.+|+.... .|......-. ..++.++...+.. .........|++||+++|+....
T Consensus 353 D-~dG~~L~st~~g----HGDa~hv~d~dP~rpGlev~~~~E~~------------~~~~G~~~~DA~tG~vlw~~~~~ 414 (620)
T 2zuy_A 353 D-HDGTGLYSTGLG----HGDAMHVGDLDPSRKGLEVFQVHEDA------------TKPYGLSLRDAGTGEILWGVHAG 414 (620)
T ss_dssp C-TTSSEEEECSCC----CCSCEEEECSCTTSSSCEEEEECCCT------------TSSCSEEEEETTTCCEEEEECCS
T ss_pred C-CCCCEEeecCCC----CCceeEEEecCCCCCCCEEEEEecCC------------CCCCceEEEECCCCcEEEEecCc
Confidence 7 679999998752 1111111101 1233332222210 11224567899999999998753
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00014 Score=69.01 Aligned_cols=150 Identities=9% Similarity=0.070 Sum_probs=88.8
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC-CCcccceee--eCC-eEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG-GGAMWGAAT--DER-RIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-g~~~~~~~~--~~~-~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
...++++..++.+..+|..+++.+..+........ ......... ++. .++....+ ...+.|.
T Consensus 178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------------~~~~~i~ 243 (416)
T 2pm9_A 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGS--------------DNDPSIL 243 (416)
T ss_dssp TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECC--------------SSSCCCC
T ss_pred CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECC--------------CCCceEE
Confidence 46788889999999999999999888775421000 112222222 332 44444221 0112799
Q ss_pred EEECCCC-cEEeeec-CCCCCCCCcceEE---eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEe-CC-E
Q 040693 281 AMDASNG-NVLWSTA-DPSNGTAPGPVTV---ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVS-NG-C 353 (382)
Q Consensus 281 a~d~~tG-~~~W~~~-~~~~~~~~~~~~~---~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~-~g-~ 353 (382)
.+|.+++ +++.... .... ....+.+ ++.+++.++ .++.|..+|.++++.+.++............. ++ +
T Consensus 244 ~~d~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~l~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 244 IWDLRNANTPLQTLNQGHQK--GILSLDWCHQDEHLLLSSG--RDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPD 319 (416)
T ss_dssp EEETTSTTSCSBCCCSCCSS--CEEEEEECSSCSSCEEEEE--SSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTT
T ss_pred EEeCCCCCCCcEEeecCccC--ceeEEEeCCCCCCeEEEEe--CCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCC
Confidence 9999987 4444443 2211 1122223 335666666 48999999999999998887654444444443 34 5
Q ss_pred EEEEeCceeEeecCCccCC
Q 040693 354 IYMGNGYKVTVGFGNKNFT 372 (382)
Q Consensus 354 lyv~~~~g~~~~~~~~~~~ 372 (382)
++++.+....+.+|.+...
T Consensus 320 ~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 320 LFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp EEEECCSSSEEEEEESCCC
T ss_pred EEEEEecCCcEEEEEccCC
Confidence 6665554455677776653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.13 E-value=0.00027 Score=65.08 Aligned_cols=148 Identities=8% Similarity=0.033 Sum_probs=85.8
Q ss_pred ecEEEEEccCcEEEEEeCCC---------CCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDS---------GSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTI 275 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~t---------G~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 275 (382)
+..++++..++.+..+|..+ ++.+..+.... .........+.++++ ..
T Consensus 112 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~------~v~~~~~~~~~l~~~-----------------~~ 168 (342)
T 1yfq_A 112 DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN------KIFTMDTNSSRLIVG-----------------MN 168 (342)
T ss_dssp TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC------CEEEEEECSSEEEEE-----------------ES
T ss_pred CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCC------ceEEEEecCCcEEEE-----------------eC
Confidence 46788888999999999888 77776665321 223333333445555 34
Q ss_pred CceEEEEECCC-CcEEeeecCCCCCCCCcceEE---eCCEEEEeeecCCCcEEEEeCCCC------cEeEEEecCCc---
Q 040693 276 AGGWVAMDASN-GNVLWSTADPSNGTAPGPVTV---ANGVLFGGSTYRQGPIYAMDVKTG------KILWSYDTGAT--- 342 (382)
Q Consensus 276 ~g~v~a~d~~t-G~~~W~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~g~l~~ld~~tG------~ilw~~~~~~~--- 342 (382)
++.|..+|.++ ++................+.+ ++..+++++ .+|.+...|.+.+ +.+..+.....
T Consensus 169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (342)
T 1yfq_A 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK 246 (342)
T ss_dssp TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT
T ss_pred CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEe--cCCcEEEEEEcCCCcccccccceeeeccccccc
Confidence 58899999998 764333221110111222223 345666666 4899999888766 77777765422
Q ss_pred ------eecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 343 ------IYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 343 ------~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
......+ .+..|+.++.+|. +.+| |..+++.+..+
T Consensus 247 ~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vw--d~~~~~~~~~~ 289 (342)
T 1yfq_A 247 DTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCW--NLQTRKKIKNF 289 (342)
T ss_dssp CCSSCCCEEEEEECTTTCCEEEEETTSC-EEEE--ETTTTEEEEEC
T ss_pred ccccceeEEEEEEcCCCCEEEEecCCce-EEEE--cCccHhHhhhh
Confidence 2223333 2344665666655 3444 45567776654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0011 Score=61.98 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=41.7
Q ss_pred CCEEEEeeecCCCcEEEEeCCCCcEeEEE--ecCCce---ecceEE--eCCEEEEEeCc-eeEeecCCccCCCCCe
Q 040693 309 NGVLFGGSTYRQGPIYAMDVKTGKILWSY--DTGATI---YGGASV--SNGCIYMGNGY-KVTVGFGNKNFTSGTS 376 (382)
Q Consensus 309 ~~~v~~~~~~~~g~l~~ld~~tG~ilw~~--~~~~~~---~~~p~~--~~g~lyv~~~~-g~~~~~~~~~~~~g~~ 376 (382)
+..+|+... .++.|..+|.++|++.... ...... ...+.+ .+..||+++.. ...+.+|.++..+|+.
T Consensus 222 g~~l~v~~~-~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~ 296 (361)
T 3scy_A 222 GKFAYLINE-IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTL 296 (361)
T ss_dssp SSEEEEEET-TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCE
T ss_pred CCEEEEEcC-CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcE
Confidence 347877763 4788999999888764332 221111 112333 34458888776 5567888888878874
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0012 Score=60.94 Aligned_cols=123 Identities=11% Similarity=0.064 Sum_probs=69.6
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCC-CcEE
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASN-GNVL 290 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~t-G~~~ 290 (382)
.+.|+.+|.++++..-..... ....+.+. ++..+|+... ..+.|+.+|.++ |+.+
T Consensus 161 ~~~l~~~~~~~~~~~~~~~~~------~~~~~i~~~~dg~~l~v~~~----------------~~~~i~~~d~~~~g~~~ 218 (333)
T 2dg1_A 161 LGGVYYVSPDFRTVTPIIQNI------SVANGIALSTDEKVLWVTET----------------TANRLHRIALEDDGVTI 218 (333)
T ss_dssp CEEEEEECTTSCCEEEEEEEE------SSEEEEEECTTSSEEEEEEG----------------GGTEEEEEEECTTSSSE
T ss_pred CceEEEEeCCCCEEEEeecCC------CcccceEECCCCCEEEEEeC----------------CCCeEEEEEecCCCcCc
Confidence 467999998877654322110 01122222 4456777632 246799999874 5543
Q ss_pred eee------cCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc------eecceEEe-C-CEEE
Q 040693 291 WST------ADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT------IYGGASVS-N-GCIY 355 (382)
Q Consensus 291 W~~------~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~------~~~~p~~~-~-g~ly 355 (382)
... .... ......+.++ ++.+|+++. .++.|+.+|+ +|+.+.++..+.. ...++++. + ++||
T Consensus 219 ~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~-~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~ 295 (333)
T 2dg1_A 219 QPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMY-GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLI 295 (333)
T ss_dssp EEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEE-TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEE
T ss_pred ccccceEEEecCC-CCCCCceEECCCCCEEEEEc-CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEE
Confidence 321 1111 0011223444 467888774 3578999998 5888888876543 23344442 3 5899
Q ss_pred EEeCce
Q 040693 356 MGNGYK 361 (382)
Q Consensus 356 v~~~~g 361 (382)
+++..|
T Consensus 296 v~~~~g 301 (333)
T 2dg1_A 296 ICSNDI 301 (333)
T ss_dssp EEEECG
T ss_pred EEeCcc
Confidence 988764
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0008 Score=63.98 Aligned_cols=146 Identities=9% Similarity=0.082 Sum_probs=85.9
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
...+++++.|+.+..+|..+++.+..+.... .......... ++..++++ ..++.|..+
T Consensus 144 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~iw 203 (402)
T 2aq5_A 144 QNVLLSAGCDNVILVWDVGTGAAVLTLGPDV---HPDTIYSVDWSRDGALICTS-----------------CRDKRVRVI 203 (402)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECTTT---CCSCEEEEEECTTSSCEEEE-----------------ETTSEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCCCCccEEEecCC---CCCceEEEEECCCCCEEEEE-----------------ecCCcEEEE
Confidence 3688888999999999999999888873111 0112222222 45556665 345889999
Q ss_pred ECCCCcEEeee-cCCCCCCCCcceEE-eCCEEEEeee--cCCCcEEEEeCCCCcE-eEEEecCC-ceecceEE--eCCEE
Q 040693 283 DASNGNVLWST-ADPSNGTAPGPVTV-ANGVLFGGST--YRQGPIYAMDVKTGKI-LWSYDTGA-TIYGGASV--SNGCI 354 (382)
Q Consensus 283 d~~tG~~~W~~-~~~~~~~~~~~~~~-~~~~v~~~~~--~~~g~l~~ld~~tG~i-lw~~~~~~-~~~~~p~~--~~g~l 354 (382)
|+++++.+.+. ....... ...+.. .++.+++... ..++.|..+|..+++. +-...... .....+.+ .+..|
T Consensus 204 d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 282 (402)
T 2aq5_A 204 EPRKGTVVAEKDRPHEGTR-PVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV 282 (402)
T ss_dssp ETTTTEEEEEEECSSCSSS-CCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred eCCCCceeeeeccCCCCCc-ceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence 99999999887 3332211 122223 3454444331 1489999999998765 33333322 22233333 34566
Q ss_pred EEEeCceeEeecCCccC
Q 040693 355 YMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 355 yv~~~~g~~~~~~~~~~ 371 (382)
+++.+....+.+|.++.
T Consensus 283 ~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 283 YLCGKGDSSIRYFEITS 299 (402)
T ss_dssp EEEETTCSCEEEEEECS
T ss_pred EEEEcCCCeEEEEEecC
Confidence 66654334455666554
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0016 Score=58.65 Aligned_cols=186 Identities=16% Similarity=0.157 Sum_probs=107.0
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc--CcEEEEE
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK--SGFAWAL 220 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~--~g~l~al 220 (382)
+.|..+|++ |+.++++....... +....|.-..+. + .++.+++... ++.++.+
T Consensus 51 ~~i~~~d~~-g~~~~~~~~~~~~~---------------------~~~~~p~~i~~~-~--~~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 51 HRIQIFDKE-GRFKFQFGECGKRD---------------------SQLLYPNRVAVV-R--NSGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp TEEEEECTT-SCEEEEECCBSSST---------------------TCBSSEEEEEEE-T--TTTEEEEEECGGGCEEEEE
T ss_pred CEEEEECCC-CcEEEEecccCCCc---------------------ccccCceEEEEE-c--CCCeEEEEcCCCCCEEEEE
Confidence 789999976 99888875432100 001223222221 1 1345666553 7889999
Q ss_pred eCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 221 DRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 221 d~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
| .+|+.+..+..... ......++ .++.+|++.. ..+.|..+|+ +|+.++........
T Consensus 106 d-~~g~~~~~~~~~~~----~~~~~i~~~~~g~l~v~~~----------------~~~~i~~~~~-~g~~~~~~~~~~~~ 163 (286)
T 1q7f_A 106 N-QYGQFVRKFGATIL----QHPRGVTVDNKGRIIVVEC----------------KVMRVIIFDQ-NGNVLHKFGCSKHL 163 (286)
T ss_dssp C-TTSCEEEEECTTTC----SCEEEEEECTTSCEEEEET----------------TTTEEEEECT-TSCEEEEEECTTTC
T ss_pred C-CCCcEEEEecCccC----CCceEEEEeCCCCEEEEEC----------------CCCEEEEEcC-CCCEEEEeCCCCcc
Confidence 9 56888877753211 12223333 3456787632 2467999995 58887776543211
Q ss_pred CCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc--eecceEE-eCCEEEEEeCcee-EeecCCccCCCC
Q 040693 300 TAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT--IYGGASV-SNGCIYMGNGYKV-TVGFGNKNFTSG 374 (382)
Q Consensus 300 ~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~--~~~~p~~-~~g~lyv~~~~g~-~~~~~~~~~~~g 374 (382)
.....+.++ ++.+|++.. .++.|+.+|. +|+.+.++...+. .....++ .+|+||+++.... .+.+| + .+|
T Consensus 164 ~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~--~-~~g 238 (286)
T 1q7f_A 164 EFPNGVVVNDKQEIFISDN-RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF--T-QDG 238 (286)
T ss_dssp SSEEEEEECSSSEEEEEEG-GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE--C-TTS
T ss_pred CCcEEEEECCCCCEEEEEC-CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEE--C-CCC
Confidence 112234444 478888763 4689999997 5788777754321 1122333 4689999986542 34444 3 357
Q ss_pred CeEEEE
Q 040693 375 TSLYAF 380 (382)
Q Consensus 375 ~~l~~~ 380 (382)
+.+..+
T Consensus 239 ~~~~~~ 244 (286)
T 1q7f_A 239 QLISAL 244 (286)
T ss_dssp CEEEEE
T ss_pred CEEEEE
Confidence 766655
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.0026 Score=56.98 Aligned_cols=149 Identities=9% Similarity=-0.053 Sum_probs=80.3
Q ss_pred cEEEEE-ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee--CCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVVAV-QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+.||+. ...+.+..+|.+.....-..... .....+.+++ ++.+|++... ...+.|+.+
T Consensus 91 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~-----~~~P~~i~vd~~~g~lyv~~~~--------------~~~~~I~~~ 151 (267)
T 1npe_A 91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDTG-----LVNPRGIVTDPVRGNLYWTDWN--------------RDNPKIETS 151 (267)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSS-----CSSEEEEEEETTTTEEEEEECC--------------SSSCEEEEE
T ss_pred CeEEEEECCCCEEEEEEcCCCCEEEEEECC-----CCCccEEEEeeCCCEEEEEECC--------------CCCcEEEEE
Confidence 345444 45678888887632221111111 0122233443 6889987432 113578888
Q ss_pred ECCCCcEEeee-cCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeC
Q 040693 283 DASNGNVLWST-ADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNG 359 (382)
Q Consensus 283 d~~tG~~~W~~-~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~ 359 (382)
++. |+..-.. .... .....+.++ ++.+|++.. ..+.|+.+|+++++..-..+. ...-....+.++.||+++.
T Consensus 152 ~~d-g~~~~~~~~~~~--~~P~gia~d~~~~~lyv~d~-~~~~I~~~~~~g~~~~~~~~~-~~~P~gi~~d~~~lyva~~ 226 (267)
T 1npe_A 152 HMD-GTNRRILAQDNL--GLPNGLTFDAFSSQLCWVDA-GTHRAECLNPAQPGRRKVLEG-LQYPFAVTSYGKNLYYTDW 226 (267)
T ss_dssp ETT-SCCCEEEECTTC--SCEEEEEEETTTTEEEEEET-TTTEEEEEETTEEEEEEEEEC-CCSEEEEEEETTEEEEEET
T ss_pred ecC-CCCcEEEEECCC--CCCcEEEEcCCCCEEEEEEC-CCCEEEEEecCCCceEEEecC-CCCceEEEEeCCEEEEEEC
Confidence 865 3321111 1111 112234444 578999875 567899999985543332221 1111234567999999986
Q ss_pred ceeEeecCCccCCCCCeEEEE
Q 040693 360 YKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 360 ~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.... ++.++..+|+.+-.+
T Consensus 227 ~~~~--v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 227 KTNS--VIAMDLAISKEMDTF 245 (267)
T ss_dssp TTTE--EEEEETTTTEEEEEE
T ss_pred CCCe--EEEEeCCCCCceEEE
Confidence 5432 466888888876544
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00026 Score=67.45 Aligned_cols=145 Identities=11% Similarity=0.059 Sum_probs=83.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+|+.+.++...... ....-.....+ +..|+++..++.+..+|
T Consensus 153 dg~i~iwd~~~~~~~~~~~~~~~~-------------------------~~v~~~~~~~~---~~~l~~~~~d~~i~iwd 204 (402)
T 2aq5_A 153 DNVILVWDVGTGAAVLTLGPDVHP-------------------------DTIYSVDWSRD---GALICTSCRDKRVRVIE 204 (402)
T ss_dssp TSCEEEEETTTTEEEEEECTTTCC-------------------------SCEEEEEECTT---SSCEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCCccEEEecCCCC-------------------------CceEEEEECCC---CCEEEEEecCCcEEEEe
Confidence 388999999999988877422111 01111112222 46778888899999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEe-cCccccccccCCCCCCCCCceEEEEECCCCcE-EeeecCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNI-ANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV-LWSTADPSN 298 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~-~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~-~W~~~~~~~ 298 (382)
..+++.+..+..... +........ .++.+++.. .. ..++.|..+|.++++. +-.......
T Consensus 205 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~~~--------------~~d~~i~iwd~~~~~~~~~~~~~~~~ 267 (402)
T 2aq5_A 205 PRKGTVVAEKDRPHE---GTRPVHAVFVSEGKILTTGFSR--------------MSERQVALWDTKHLEEPLSLQELDTS 267 (402)
T ss_dssp TTTTEEEEEEECSSC---SSSCCEEEECSTTEEEEEEECT--------------TCCEEEEEEETTBCSSCSEEEECCCC
T ss_pred CCCCceeeeeccCCC---CCcceEEEEcCCCcEEEEeccC--------------CCCceEEEEcCccccCCceEEeccCC
Confidence 999999888732211 111111111 234444432 11 2358899999999875 323332221
Q ss_pred CCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcE
Q 040693 299 GTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 299 ~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
. ....+.+. +..++++.. .++.|..+|..+++.
T Consensus 268 ~-~v~~~~~s~~~~~l~~~g~-~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 268 S-GVLLPFFDPDTNIVYLCGK-GDSSIRYFEITSEAP 302 (402)
T ss_dssp S-SCEEEEEETTTTEEEEEET-TCSCEEEEEECSSTT
T ss_pred C-ceeEEEEcCCCCEEEEEEc-CCCeEEEEEecCCCc
Confidence 1 12222332 456665442 489999999999883
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.0026 Score=57.08 Aligned_cols=129 Identities=15% Similarity=0.066 Sum_probs=71.1
Q ss_pred cEEEEE-ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAV-QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+.++++ ..++.++.+|.+ |+... +..+. .......... .++.+|++.. ..+.|..+|
T Consensus 115 g~l~v~~~~~~~i~~~~~~-g~~~~-~~~~~---~~~~~~~i~~d~~g~l~v~~~----------------~~~~i~~~~ 173 (300)
T 2qc5_A 115 GDIWFTQLNGDRIGKLTAD-GTIYE-YDLPN---KGSYPAFITLGSDNALWFTEN----------------QNNSIGRIT 173 (300)
T ss_dssp TCEEEEETTTTEEEEECTT-SCEEE-EECSS---TTCCEEEEEECTTSSEEEEET----------------TTTEEEEEC
T ss_pred CCEEEEccCCCeEEEECCC-CCEEE-ccCCC---CCCCceeEEECCCCCEEEEec----------------CCCeEEEEC
Confidence 345554 446789999998 87763 22221 1112223333 3456887632 246799999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC--ceecceEE-eCCEEEEEeC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA--TIYGGASV-SNGCIYMGNG 359 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~--~~~~~p~~-~~g~lyv~~~ 359 (382)
+ +|+..- +..+........+.++ ++.+|+++. ..+.|+.+|+ +|+.... ..+. ......++ .+|+||+++.
T Consensus 174 ~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 174 N-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEI-MGNKIGRITT-TGEISEY-DIPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp T-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEEEE-ECSSTTCCEEEEEECSTTCEEEEET
T ss_pred C-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEcc-CCCEEEEEcC-CCcEEEE-ECCCCCCCceEEEECCCCCEEEecc
Confidence 8 776653 3332211112233444 567888774 3567999998 6776543 2221 11222333 3688999985
Q ss_pred c
Q 040693 360 Y 360 (382)
Q Consensus 360 ~ 360 (382)
.
T Consensus 249 ~ 249 (300)
T 2qc5_A 249 G 249 (300)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0026 Score=58.97 Aligned_cols=216 Identities=13% Similarity=0.196 Sum_probs=114.4
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCc--eeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGR--ILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATG 108 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~--~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~ 108 (382)
++.+|++... ++.|+.+|+ +|+ .+.+................. ...+++++++.+|++..
T Consensus 101 ~g~l~v~d~~-------------~~~v~~~~~-~g~~~~~~~~~~~~~~g~~~~~~~~P----~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 101 DGNYWVTDVA-------------LHQVFKLDP-HSKEGPLLILGRSMQPGSDQNHFCQP----TDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp TSCEEEEETT-------------TTEEEEECT-TCSSCCSEEESBTTBCCCSTTCCSSE----EEEEECTTTCCEEEEEC
T ss_pred CCCEEEEECC-------------CCEEEEEeC-CCCeEEEEEecccCCCCCCccccCCC----cEEEEeCCCCeEEEEeC
Confidence 4678887652 678999997 565 444442210000000000000 12567765678888763
Q ss_pred -CCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCC
Q 040693 109 -NLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDA 187 (382)
Q Consensus 109 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (382)
. .+.|..+| .+|+.++.+.......- +..
T Consensus 163 ~~--------------------------------~~~I~~~~-~~g~~~~~~~~~g~~~~-----------------~~~ 192 (329)
T 3fvz_A 163 YC--------------------------------NSRIVQFS-PSGKFVTQWGEESSGSS-----------------PRP 192 (329)
T ss_dssp SS--------------------------------CCEEEEEC-TTSCEEEEECEECCSSS-----------------CCT
T ss_pred CC--------------------------------CCeEEEEc-CCCCEEEEeccCCCCCC-----------------CCC
Confidence 2 27899999 57999988754322100 000
Q ss_pred CCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCcccccccc
Q 040693 188 DFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNL 267 (382)
Q Consensus 188 ~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~ 267 (382)
.--..|.-..+..++ +.++++...++.+..+|.++|+.+..+..... +...+.....-+.+|....+ .+..
T Consensus 193 ~~~~~p~gia~d~~~--g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~---~~~~~~~~~~pg~~~~~~g~----~~v~ 263 (329)
T 3fvz_A 193 GQFSVPHSLALVPHL--DQLCVADRENGRIQCFKTDTKEFVREIKHASF---GRNVFAISYIPGFLFAVNGK----PYFG 263 (329)
T ss_dssp TEESCEEEEEEETTT--TEEEEEETTTTEEEEEETTTCCEEEEECCTTT---TTCEEEEEEETTEEEEEECC----CCTT
T ss_pred cccCCCcEEEEECCC--CEEEEEECCCCEEEEEECCCCcEEEEEecccc---CCCcceeeecCCEEEEeCCC----EEec
Confidence 001223333333222 34445556678999999999999988764321 11222222233556655322 1111
Q ss_pred CCCCCCCCCceEEEEECCCCcEEeeecCCCCCC-CCcceEEe-CCEEEEeeecCCCcEEEEeCC
Q 040693 268 KPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT-APGPVTVA-NGVLFGGSTYRQGPIYAMDVK 329 (382)
Q Consensus 268 ~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~-~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~ 329 (382)
. .....+..+|..+|+.+..+....... ....+.++ ++.+|++.. .++.|..++++
T Consensus 264 ~-----~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~-~~~~I~~~~~~ 321 (329)
T 3fvz_A 264 D-----QEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDA-HTNTVWKFTLT 321 (329)
T ss_dssp C-----SCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEES-SSCCEEEEEEE
T ss_pred c-----CCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEEC-CCCEEEEEeCC
Confidence 1 234579999999999988764221111 11223333 456777654 45667777654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00086 Score=61.71 Aligned_cols=133 Identities=11% Similarity=0.104 Sum_probs=72.6
Q ss_pred EEEEEc-cCcEEEEEeCCCCC-eeeeecc--C--CCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 207 IVVAVQ-KSGFAWALDRDSGS-LIWSMEA--G--PGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 207 ~v~~~~-~~g~l~ald~~tG~-~~W~~~~--~--~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
.+++.. .++.++.+|..+++ .+|.... . ..........+...+++.+|++.. ..+.|+
T Consensus 129 ~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~----------------~~~~I~ 192 (306)
T 2p4o_A 129 QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT----------------EKMLLL 192 (306)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET----------------TTTEEE
T ss_pred cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC----------------CCCEEE
Confidence 444444 57899999998764 3342211 0 000000011112336778998742 347799
Q ss_pred EEECCC-CcE----EeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeE--EEecCCceecceEEe--
Q 040693 281 AMDASN-GNV----LWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILW--SYDTGATIYGGASVS-- 350 (382)
Q Consensus 281 a~d~~t-G~~----~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw--~~~~~~~~~~~p~~~-- 350 (382)
.||... |+. .+. ... ...-+.++ ++.+|++.. ..+.|..||++ |++.- +.+.+...-.+.++.
T Consensus 193 ~~~~~~~g~~~~~~~~~-~~~----~P~gi~vd~dG~l~va~~-~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~ 265 (306)
T 2p4o_A 193 RIPVDSTDKPGEPEIFV-EQT----NIDDFAFDVEGNLYGATH-IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQT 265 (306)
T ss_dssp EEEBCTTSCBCCCEEEE-ESC----CCSSEEEBTTCCEEEECB-TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCS
T ss_pred EEEeCCCCCCCccEEEe-ccC----CCCCeEECCCCCEEEEeC-CCCeEEEECCC-CCEEEEeecccccCCceEEEEecc
Confidence 999875 542 111 111 12234444 567888875 56899999986 87733 333332222344443
Q ss_pred ---CCEEEEEeCcee
Q 040693 351 ---NGCIYMGNGYKV 362 (382)
Q Consensus 351 ---~g~lyv~~~~g~ 362 (382)
+++|||++..+.
T Consensus 266 ~~d~~~LyVt~~~~~ 280 (306)
T 2p4o_A 266 EGDCTAIYVVTNGGM 280 (306)
T ss_dssp TTTTTEEEEEECTTS
T ss_pred cCCCCEEEEECCCCc
Confidence 379999987543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00084 Score=62.03 Aligned_cols=224 Identities=11% Similarity=0.057 Sum_probs=128.3
Q ss_pred cceEEEEeCcc-Ccee-eeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCC
Q 040693 54 QGSLAKLDAKT-GRIL-WQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTS 131 (382)
Q Consensus 54 ~g~l~ald~~t-G~~l-W~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (382)
++.|..+|.++ ++.+ -....... .+ ....+.+++..++.+..+
T Consensus 63 dg~i~iw~~~~~~~~~~~~~~~h~~-----------~v--~~~~~~~~~~~l~s~~~d---------------------- 107 (368)
T 3mmy_A 63 ANDVRCWEVQDSGQTIPKAQQMHTG-----------PV--LDVCWSDDGSKVFTASCD---------------------- 107 (368)
T ss_dssp TSEEEEEEECTTSCEEEEEEEECSS-----------CE--EEEEECTTSSEEEEEETT----------------------
T ss_pred CCcEEEEEcCCCCceeEEEeccccC-----------CE--EEEEECcCCCEEEEEcCC----------------------
Confidence 88999999987 5554 22221100 01 134566666677766543
Q ss_pred CCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE
Q 040693 132 PDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211 (382)
Q Consensus 132 ~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~ 211 (382)
+.|..+|..+++.+........ + .-...... ..+..++++
T Consensus 108 -----------g~v~iwd~~~~~~~~~~~~~~~-v---------------------------~~~~~~~~-~~~~~l~~~ 147 (368)
T 3mmy_A 108 -----------KTAKMWDLSSNQAIQIAQHDAP-V---------------------------KTIHWIKA-PNYSCVMTG 147 (368)
T ss_dssp -----------SEEEEEETTTTEEEEEEECSSC-E---------------------------EEEEEEEC-SSCEEEEEE
T ss_pred -----------CcEEEEEcCCCCceeeccccCc-e---------------------------EEEEEEeC-CCCCEEEEc
Confidence 8999999999987764432211 0 11111001 114568888
Q ss_pred ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 212 QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 212 ~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
..++.+..+|..+++.+..++... ...........+++.. .++.+..+|..+....+
T Consensus 148 ~~dg~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~ 204 (368)
T 3mmy_A 148 SWDKTLKFWDTRSSNPMMVLQLPE------RCYCADVIYPMAVVAT-----------------AERGLIVYQLENQPSEF 204 (368)
T ss_dssp ETTSEEEEECSSCSSCSEEEECSS------CEEEEEEETTEEEEEE-----------------GGGCEEEEECSSSCEEE
T ss_pred cCCCcEEEEECCCCcEEEEEecCC------CceEEEecCCeeEEEe-----------------CCCcEEEEEeccccchh
Confidence 889999999999999998887542 2222233456666653 34779999999887777
Q ss_pred eecCCCCCCCCcceEE--eCC----EEEEeeecCCCcEEEEeCCCC---cEeEEEecCCc------------eecceEE-
Q 040693 292 STADPSNGTAPGPVTV--ANG----VLFGGSTYRQGPIYAMDVKTG---KILWSYDTGAT------------IYGGASV- 349 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~--~~~----~v~~~~~~~~g~l~~ld~~tG---~ilw~~~~~~~------------~~~~p~~- 349 (382)
.............+.+ ... .++.++ .++.+..+|..++ +.+..+..... ......+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp EECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 6543321111111111 111 255555 4899999999877 45555543321 1222333
Q ss_pred -eCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 350 -SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 350 -~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.+..|+.++.+|. +.+|. ..+++.+..+
T Consensus 283 p~~~~l~s~~~dg~-i~iwd--~~~~~~~~~~ 311 (368)
T 3mmy_A 283 PVHGTLATVGSDGR-FSFWD--KDARTKLKTS 311 (368)
T ss_dssp TTTCCEEEEETTSC-EEEEE--TTTTEEEEEC
T ss_pred cCCCEEEEEccCCe-EEEEE--CCCCcEEEEe
Confidence 2345555656655 44554 4457766544
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00046 Score=68.99 Aligned_cols=147 Identities=13% Similarity=0.019 Sum_probs=83.6
Q ss_pred cEEEEEccC----cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCC-eEEEEecCccccccccCCCCCCCCCce
Q 040693 206 DIVVAVQKS----GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DER-RIYTNIANSQHKNFNLKPSKNSTIAGG 278 (382)
Q Consensus 206 ~~v~~~~~~----g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~-~v~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (382)
..++++..+ +.++.+| +++.+....... ........ ++. .++.+ ..++.
T Consensus 129 ~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~-----~~v~~~~~~~~~~~~l~~~-----------------~~d~~ 184 (615)
T 1pgu_A 129 RRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS-----QRINACHLKQSRPMRSMTV-----------------GDDGS 184 (615)
T ss_dssp SEEEEEECCSSCSEEEEETT--TCCEEEECCSCS-----SCEEEEEECSSSSCEEEEE-----------------ETTTE
T ss_pred CEEEEeccCCCCccEEEEEE--CCCcceeeecCC-----ccEEEEEECCCCCcEEEEE-----------------eCCCc
Confidence 455555544 6777777 677766655321 12222222 333 44444 34588
Q ss_pred EEEEECCCCcEEeeecCCCCCC-CCcceEE--e-CCEEEEeeecCCCcEEEEeCCCCcEeEEE-e---cCCceecceEEe
Q 040693 279 WVAMDASNGNVLWSTADPSNGT-APGPVTV--A-NGVLFGGSTYRQGPIYAMDVKTGKILWSY-D---TGATIYGGASVS 350 (382)
Q Consensus 279 v~a~d~~tG~~~W~~~~~~~~~-~~~~~~~--~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~-~---~~~~~~~~p~~~ 350 (382)
|..+|.++++.+.+........ ....+.+ + +.+++.++ .++.|..+|..+++.+.++ . ............
T Consensus 185 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp EEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE--TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred EEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe--CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc
Confidence 9999999999988876543200 1122223 2 34666666 4899999999999999888 3 222222222222
Q ss_pred CCE-EEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 351 NGC-IYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 351 ~g~-lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
+++ |+.++.+|. +.+|. ..+++.+..+.
T Consensus 263 ~~~~l~~~~~d~~-i~~wd--~~~~~~~~~~~ 291 (615)
T 1pgu_A 263 DSQKFATVGADAT-IRVWD--VTTSKCVQKWT 291 (615)
T ss_dssp SSSEEEEEETTSE-EEEEE--TTTTEEEEEEE
T ss_pred CCCEEEEEcCCCc-EEEEE--CCCCcEEEEEc
Confidence 544 444555544 44554 45577776654
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4.6e-05 Score=76.46 Aligned_cols=230 Identities=13% Similarity=0.039 Sum_probs=129.7
Q ss_pred EEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceee-CCCCeEEEEc
Q 040693 29 YYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSID-PIRNHVYIAT 107 (382)
Q Consensus 29 v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~v~v~~ 107 (382)
..+..+||... .+.+|..+|+++.+......+.... . ..| ..... ++.++||++.
T Consensus 99 ~DG~~lfVnd~-------------~~~rVavIdl~t~~~~~ii~ip~g~-~----phg------~~~~~~p~~~~v~~~~ 154 (595)
T 1fwx_A 99 YDGRFLFMNDK-------------ANTRVARVRCDVMKCDAILEIPNAK-G----IHG------LRPQKWPRSNYVFCNG 154 (595)
T ss_dssp EEEEEEEEEET-------------TTTEEEEEETTTTEEEEEEECSSCC-S----EEE------EEECCSSBCSEEEEEE
T ss_pred cCCCEEEEEcC-------------CCCEEEEEECCCceEeeEEeCCCCC-C----Ccc------eeeeecCCCcEEEEec
Confidence 34577888654 2678999999999988866541100 0 001 12224 6778999986
Q ss_pred CCCCCCCcchhhcccccCCCCCCCCCCCCCC--CCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCC
Q 040693 108 GNLYSVPLHIRQCQEENNQTTPTSPDKCIEP--ENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSP 185 (382)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (382)
.. +.|...+++... +.+++.+.+||.+|.+++|+......
T Consensus 155 ~~-----------------~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~--------------------- 196 (595)
T 1fwx_A 155 ED-----------------ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN--------------------- 196 (595)
T ss_dssp CS-----------------CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---------------------
T ss_pred cc-----------------ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---------------------
Confidence 54 223333333332 45578999999999999999988542
Q ss_pred CCCCCCCceEEEeeeCceeecEEEEEccCc---------------EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeC
Q 040693 186 DADFGEAPMMLSMYRNKVKHDIVVAVQKSG---------------FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDE 250 (382)
Q Consensus 186 ~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g---------------~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~ 250 (382)
|-......+ +..+++...++ .+..+|..+.+ ...-++
T Consensus 197 -------pd~~~~spd---Gk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~------------------~~v~~G 248 (595)
T 1fwx_A 197 -------LDNCDADYE---GKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIE------------------KAIAAG 248 (595)
T ss_dssp -------CCCEEECSS---SSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHH------------------HHHHHT
T ss_pred -------ccceEECCC---CCEEEEEecCcccCcchhhccccccceEEEeecccee------------------EeccCC
Confidence 111111111 23333333221 11111111000 000023
Q ss_pred CeEEEEecCccccccccCCCCCCCCCceEEEEECCC--CcE-EeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEe
Q 040693 251 RRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASN--GNV-LWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMD 327 (382)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~t--G~~-~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld 327 (382)
...++ +.|..||.++ +++ +-.++.+.. .....+.-++.++|++.. ....+..+|
T Consensus 249 k~~~i---------------------~~V~VID~~~~~~~~~~~~Ipvg~~-PhGv~~sPDGk~v~V~~~-~s~~VsVid 305 (595)
T 1fwx_A 249 DYQEL---------------------NGVKVVDGRKEASSLFTRYIPIANN-PHGCNMAPDKKHLCVAGK-LSPTVTVLD 305 (595)
T ss_dssp CSEEE---------------------TTEEEEECSGGGCCSSEEEEEEESS-CCCEEECTTSSEEEEECT-TSSBEEEEE
T ss_pred CeeEE---------------------CcEEEEeCcccCCceeEEEEecCCC-ceEEEEcCCCCEEEEeCC-CCCeEEEEE
Confidence 33343 4499999999 766 667776542 233333335667888764 578899999
Q ss_pred CCCCc------------EeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccC
Q 040693 328 VKTGK------------ILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 328 ~~tG~------------ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
.++.+ ++.+.+.+.+-.....-.+|++|++..-...+..|+++.
T Consensus 306 ~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 306 VTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp GGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred CcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 98653 455555554322222224579999887666555566554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00082 Score=64.48 Aligned_cols=150 Identities=9% Similarity=0.011 Sum_probs=91.4
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+++.++++...... ....-..+..+ +..+++++.++.+..+|
T Consensus 191 d~~i~iwd~~~~~~~~~~~~~~h~-------------------------~~v~~~~~s~~---~~~l~s~~~dg~i~iwd 242 (437)
T 3gre_A 191 LSRVIIFDIRTLERLQIIENSPRH-------------------------GAVSSICIDEE---CCVLILGTTRGIIDIWD 242 (437)
T ss_dssp TSEEEEEETTTCCEEEEEECCGGG-------------------------CCEEEEEECTT---SCEEEEEETTSCEEEEE
T ss_pred CCeEEEEeCCCCeeeEEEccCCCC-------------------------CceEEEEECCC---CCEEEEEcCCCeEEEEE
Confidence 389999999999999998764221 00111111222 46788899999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee-eCC-eEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT-DER-RIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~-~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
..+++.+-.+............+.+.. .++ .++.+ ..++.|..+|.++|+.+.........
T Consensus 243 ~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~-----------------~~dg~i~iwd~~~~~~~~~~~~~~~~ 305 (437)
T 3gre_A 243 IRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGG-----------------SSKTFLTIWNFVKGHCQYAFINSDEQ 305 (437)
T ss_dssp TTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEE-----------------STTEEEEEEETTTTEEEEEEESSSSC
T ss_pred cCCccEEEEEecCCCCceEEEEeccccCCCccEEEEE-----------------cCCCcEEEEEcCCCcEEEEEEcCCCC
Confidence 999998877654221000001111111 123 33333 34588999999999987776532210
Q ss_pred CC------------------------CcceEEeCC-EEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 300 TA------------------------PGPVTVANG-VLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 300 ~~------------------------~~~~~~~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
.. ...+.+.++ +++.++ .++.|...|.++++.+-.+.
T Consensus 306 ~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~ 367 (437)
T 3gre_A 306 PSMEHFLPIEKGLEELNFCGIRSLNALSTISVSNDKILLTDE--ATSSIVMFSLNELSSSKAVI 367 (437)
T ss_dssp CCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEG--GGTEEEEEETTCGGGCEEEE
T ss_pred CccceecccccccccceecccccCCceEEEEECCceEEEecC--CCCeEEEEECCCcccceEEe
Confidence 00 112233344 455555 48999999999998776665
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0012 Score=60.40 Aligned_cols=146 Identities=10% Similarity=0.123 Sum_probs=75.0
Q ss_pred cEEEE-EccCcEEEEEeCCCC---CeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 206 DIVVA-VQKSGFAWALDRDSG---SLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 206 ~~v~~-~~~~g~l~ald~~tG---~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
..+++ ...++.+..+|..+| +......... ......+ ++..+|++.. ..+.|
T Consensus 96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~------~~~~~~~s~dg~~l~~~~~----------------~~~~v 153 (343)
T 1ri6_A 96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD------GCHSANISPDNRTLWVPAL----------------KQDRI 153 (343)
T ss_dssp SEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT------TBCCCEECTTSSEEEEEEG----------------GGTEE
T ss_pred CEEEEEecCCCeEEEEECCCCccccccccccCCC------CceEEEECCCCCEEEEecC----------------CCCEE
Confidence 34544 445788888888434 3443333221 1122222 5667887631 34779
Q ss_pred EEEECCC-CcEEee----ecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCC--CCcEeE--EEe-cCCc-----
Q 040693 280 VAMDASN-GNVLWS----TADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVK--TGKILW--SYD-TGAT----- 342 (382)
Q Consensus 280 ~a~d~~t-G~~~W~----~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~--tG~ilw--~~~-~~~~----- 342 (382)
..+|+.+ |+..-. ...... .....+.+ ++.++|++.. .++.+..+|.+ +|+... ... .+..
T Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~pdg~~l~~~~~-~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 231 (343)
T 1ri6_A 154 CLFTVSDDGHLVAQDPAEVTTVEG-AGPRHMVFHPNEQYAYCVNE-LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTR 231 (343)
T ss_dssp EEEEECTTSCEEEEEEEEEECSTT-CCEEEEEECTTSSEEEEEET-TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCC
T ss_pred EEEEecCCCceeeecccccccCCC-CCcceEEECCCCCEEEEEeC-CCCEEEEEEecCCCCcEEEEeeccccCccccccC
Confidence 9999988 765432 222211 01112233 2456777653 47889999984 566532 222 1111
Q ss_pred eecceEE--eCCEEEEEeCceeEeecCCccCCCCC
Q 040693 343 IYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 343 ~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~ 375 (382)
......+ .+..||++......+.+|.++..+|+
T Consensus 232 ~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~ 266 (343)
T 1ri6_A 232 WAADIHITPDGRHLYACDRTASLITVFSVSEDGSV 266 (343)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCC
T ss_pred CccceEECCCCCEEEEEecCCCEEEEEEEcCCCCc
Confidence 1112333 24578877754455667777644443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00055 Score=71.58 Aligned_cols=155 Identities=12% Similarity=0.124 Sum_probs=88.8
Q ss_pred eEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee-CCeEEEEecCccccccccCCCCC
Q 040693 194 MMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD-ERRIYTNIANSQHKNFNLKPSKN 272 (382)
Q Consensus 194 ~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 272 (382)
.+..+..+. ++.|++++.++-|+.+|..+++..+-.. +........+....+ ++.|++++
T Consensus 364 ~v~~i~~d~--~g~lWigt~~~Gl~~~~~~~~~~~~~~~--~~~~~~~~v~~i~~d~~g~lWigt--------------- 424 (781)
T 3v9f_A 364 VVSSVCDDG--QGKLWIGTDGGGINVFENGKRVAIYNKE--NRELLSNSVLCSLKDSEGNLWFGT--------------- 424 (781)
T ss_dssp CEEEEEECT--TSCEEEEEBSSCEEEEETTEEEEECC-------CCCSBEEEEEECTTSCEEEEE---------------
T ss_pred ceEEEEEcC--CCCEEEEeCCCcEEEEECCCCeEEEccC--CCCCCCcceEEEEECCCCCEEEEe---------------
Confidence 344444443 4678888866669999998776544321 111122233333333 67888873
Q ss_pred CCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecC-----Cceecc
Q 040693 273 STIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG-----ATIYGG 346 (382)
Q Consensus 273 ~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~-----~~~~~~ 346 (382)
..+.|..+|+++++...-............+..+ ++.+|+++ .+.|+.+|+++++........ .....+
T Consensus 425 --~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt---~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 499 (781)
T 3v9f_A 425 --YLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT---HAGVFVIDLASKKVIHHYDTSNSQLLENFVRS 499 (781)
T ss_dssp --TTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE---TTEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred --ccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE---CCceEEEeCCCCeEEecccCcccccccceeEE
Confidence 3467999999998765432211111112233344 58999998 478999999988765543322 111222
Q ss_pred eEE-eCCEEEEEeCceeEeecCCccCCCCC
Q 040693 347 ASV-SNGCIYMGNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 347 p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~ 375 (382)
... .+|+|++++..+. ++.++..+++
T Consensus 500 i~~d~~g~lWigt~~~G---l~~~~~~~~~ 526 (781)
T 3v9f_A 500 IAQDSEGRFWIGTFGGG---VGIYTPDMQL 526 (781)
T ss_dssp EEECTTCCEEEEESSSC---EEEECTTCCE
T ss_pred EEEcCCCCEEEEEcCCC---EEEEeCCCCe
Confidence 222 4789999987322 3556665543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00031 Score=67.76 Aligned_cols=221 Identities=13% Similarity=0.031 Sum_probs=113.2
Q ss_pred ceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCC
Q 040693 55 GSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDK 134 (382)
Q Consensus 55 g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (382)
+.|+.+|.+++++.-..... . . ...+.+.+++..++++...
T Consensus 159 ~~i~i~d~~g~~~~~l~~~~-~-----------~--v~~~~~Spdg~~la~~s~~------------------------- 199 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHRSP-Q-----------P--LMSPAWSPDGSKLAYVTFE------------------------- 199 (415)
T ss_dssp EEEEEEETTSCSCEEEEEES-S-----------C--EEEEEECTTSSEEEEEECT-------------------------
T ss_pred ceEEEEcCCCCCCEEEeCCC-C-----------c--ceeeEEcCCCCEEEEEEec-------------------------
Confidence 68899998654433222111 0 0 1246778887777766532
Q ss_pred CCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccC
Q 040693 135 CIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKS 214 (382)
Q Consensus 135 ~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~ 214 (382)
.....|+.+|.++|+..--.... . ...-....++| ..+++....+
T Consensus 200 -----~~~~~i~~~d~~tg~~~~l~~~~-~---------------------------~~~~~~~spdg--~~la~~~~~~ 244 (415)
T 2hqs_A 200 -----SGRSALVIQTLANGAVRQVASFP-R---------------------------HNGAPAFSPDG--SKLAFALSKT 244 (415)
T ss_dssp -----TSSCEEEEEETTTCCEEEEECCS-S---------------------------CEEEEEECTTS--SEEEEEECTT
T ss_pred -----CCCcEEEEEECCCCcEEEeecCC-C---------------------------cccCEEEcCCC--CEEEEEEecC
Confidence 01258999999999876322111 1 11111223333 3344455544
Q ss_pred --cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 215 --GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 215 --g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
..|+.+|..+|+..--.... .....+.. ++..+++.... .....|+.+|+.+|+..
T Consensus 245 g~~~i~~~d~~~~~~~~l~~~~------~~~~~~~~spdg~~l~~~s~~--------------~g~~~i~~~d~~~~~~~ 304 (415)
T 2hqs_A 245 GSLNLYVMDLASGQIRQVTDGR------SNNTEPTWFPDSQNLAFTSDQ--------------AGRPQVYKVNINGGAPQ 304 (415)
T ss_dssp SSCEEEEEETTTCCEEECCCCS------SCEEEEEECTTSSEEEEEECT--------------TSSCEEEEEETTSSCCE
T ss_pred CCceEEEEECCCCCEEeCcCCC------CcccceEECCCCCEEEEEECC--------------CCCcEEEEEECCCCCEE
Confidence 45999999998763221111 12222332 55656655321 11236999999998754
Q ss_pred eeecCCCCCCCCcceEE--eCCEEEEeeec-CCCcEEEEeCCCCcEeEEEecCCceecceEEe-CC-EEEEEeCceeEee
Q 040693 291 WSTADPSNGTAPGPVTV--ANGVLFGGSTY-RQGPIYAMDVKTGKILWSYDTGATIYGGASVS-NG-CIYMGNGYKVTVG 365 (382)
Q Consensus 291 W~~~~~~~~~~~~~~~~--~~~~v~~~~~~-~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~-~g-~lyv~~~~g~~~~ 365 (382)
-...... ....+.+ ++..++..... ....|+.+|.++|++.. .... ....++... ++ .|+.++.++....
T Consensus 305 ~l~~~~~---~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~~-~~~~~~~~spdg~~l~~~s~~~~~~~ 379 (415)
T 2hqs_A 305 RITWEGS---QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSST-FLDETPSLAPNGTMVIYSSSQGMGSV 379 (415)
T ss_dssp ECCCSSS---EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCS-SSCEEEEECTTSSEEEEEEEETTEEE
T ss_pred EEecCCC---cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ecCC-CCcCCeEEcCCCCEEEEEEcCCCccE
Confidence 2221111 1112223 34556655531 12589999999998742 2222 233344442 44 4555555443334
Q ss_pred cCCccCCCC
Q 040693 366 FGNKNFTSG 374 (382)
Q Consensus 366 ~~~~~~~~g 374 (382)
+|.++..++
T Consensus 380 l~~~d~~g~ 388 (415)
T 2hqs_A 380 LNLVSTDGR 388 (415)
T ss_dssp EEEEETTSC
T ss_pred EEEEECCCC
Confidence 555555433
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0012 Score=60.54 Aligned_cols=108 Identities=13% Similarity=0.070 Sum_probs=73.1
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
...++.+..++.+..+|..+++.+..+..-. .......+ ++..++.+ ..++.|..+
T Consensus 185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~-----~~v~~~~~s~~~~~l~s~-----------------s~Dg~i~iw 242 (340)
T 4aow_A 185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHT-----GYLNTVTVSPDGSLCASG-----------------GKDGQAMLW 242 (340)
T ss_dssp SCEEEEEETTSCEEEEETTTTEEEEEECCCS-----SCEEEEEECTTSSEEEEE-----------------ETTCEEEEE
T ss_pred CcEEEEEcCCCEEEEEECCCCceeeEecCCC-----CcEEEEEECCCCCEEEEE-----------------eCCCeEEEE
Confidence 4566677889999999999998887765321 12222222 44555554 345889999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
|..+++.+........ ...+.. .++.+++++. ++.|..+|.++++.+++.+.
T Consensus 243 d~~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~--d~~i~iwd~~~~~~~~~~~~ 295 (340)
T 4aow_A 243 DLNEGKHLYTLDGGDI---INALCFSPNRYWLCAAT--GPSIKIWDLEGKIIVDELKQ 295 (340)
T ss_dssp ETTTTEEEEEEECSSC---EEEEEECSSSSEEEEEE--TTEEEEEETTTTEEEEEECC
T ss_pred EeccCceeeeecCCce---EEeeecCCCCceeeccC--CCEEEEEECCCCeEEEeccc
Confidence 9999999988775431 122222 3455556554 89999999999988888754
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00016 Score=68.24 Aligned_cols=148 Identities=12% Similarity=0.021 Sum_probs=89.4
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..|+++..++.+..+|..+++.+..++... .......+ ++..++++. ..++.|..+
T Consensus 151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~-----~~v~~v~~s~~~~~~~~s~----------------~~dg~v~~w 209 (357)
T 4g56_B 151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS-----SEVNCVAACPGKDTIFLSC----------------GEDGRILLW 209 (357)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCS-----SCEEEEEECTTCSSCEEEE----------------ETTSCEEEC
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEcCCC-----CCEEEEEEccCCCceeeee----------------ccCCceEEE
Confidence 3678888999999999999999998876422 12222222 333333332 235789999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE--eC-CEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEE-
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV--AN-GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYM- 356 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~--~~-~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv- 356 (382)
|+++++..-.............+.+ ++ .++..++ .++.|..+|..+++.+..+...........+ .++++++
T Consensus 210 d~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 210 DTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp CTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEE--SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred ECCCCceeeeeeeccccccccchhhhhcccceEEEee--cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEE
Confidence 9999987766554332111222333 23 3555555 4899999999999998887655443334444 2335444
Q ss_pred EeCceeEeecCCccCCCCCeEE
Q 040693 357 GNGYKVTVGFGNKNFTSGTSLY 378 (382)
Q Consensus 357 ~~~~g~~~~~~~~~~~~g~~l~ 378 (382)
++.+|. +.+|. ..+|+.+.
T Consensus 288 gs~D~~-i~iwd--~~~~~~~~ 306 (357)
T 4g56_B 288 ISEDCT-VAVLD--ADFSEVFR 306 (357)
T ss_dssp EETTSC-EEEEC--TTSCEEEE
T ss_pred EeCCCE-EEEEE--CCCCcEeE
Confidence 444444 55554 44566654
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00013 Score=67.43 Aligned_cols=101 Identities=11% Similarity=0.102 Sum_probs=63.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-----eCCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-----DERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
+..++++..++.+..+|..+++.++...... ....... ++..++++ ..++.|
T Consensus 180 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~------~v~~~~~~~~~~~~~~l~~~-----------------~~dg~i 236 (357)
T 3i2n_A 180 ERVVCAGYDNGDIKLFDLRNMALRWETNIKN------GVCSLEFDRKDISMNKLVAT-----------------SLEGKF 236 (357)
T ss_dssp CCEEEEEETTSEEEEEETTTTEEEEEEECSS------CEEEEEESCSSSSCCEEEEE-----------------ESTTEE
T ss_pred CCEEEEEccCCeEEEEECccCceeeecCCCC------ceEEEEcCCCCCCCCEEEEE-----------------CCCCeE
Confidence 4678888889999999999999887765432 1122222 34556555 345889
Q ss_pred EEEECCCCcEEeeec-----CCCCCCCCcceEEe-CC--EEEEeeecCCCcEEEEeCCCCc
Q 040693 280 VAMDASNGNVLWSTA-----DPSNGTAPGPVTVA-NG--VLFGGSTYRQGPIYAMDVKTGK 332 (382)
Q Consensus 280 ~a~d~~tG~~~W~~~-----~~~~~~~~~~~~~~-~~--~v~~~~~~~~g~l~~ld~~tG~ 332 (382)
..+|.++++...... .... ....+.+. ++ +++.++ .+|.|..+|..+++
T Consensus 237 ~i~d~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~ 293 (357)
T 3i2n_A 237 HVFDMRTQHPTKGFASVSEKAHKS--TVWQVRHLPQNRELFLTAG--GAGGLHLWKYEYPI 293 (357)
T ss_dssp EEEEEEEEETTTEEEEEEEECCSS--CEEEEEEETTEEEEEEEEE--TTSEEEEEEEECCS
T ss_pred EEEeCcCCCcccceeeeccCCCcC--CEEEEEECCCCCcEEEEEe--CCCcEEEeecCCCc
Confidence 999999887665543 2211 11222232 33 344444 58999999987653
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0021 Score=57.70 Aligned_cols=126 Identities=11% Similarity=0.129 Sum_probs=71.0
Q ss_pred EEEEc-cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee-CCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 208 VVAVQ-KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD-ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 208 v~~~~-~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
+++.. .++.++.+|. +|+..- +..+. ......+...+ ++.+|++.. ..+.|..+|+
T Consensus 159 l~v~~~~~~~i~~~~~-~g~~~~-~~~~~---~~~~~~~i~~d~~g~l~v~~~----------------~~~~i~~~~~- 216 (300)
T 2qc5_A 159 LWFTENQNNSIGRITN-TGKLEE-YPLPT---NAAAPVGITSGNDGALWFVEI----------------MGNKIGRITT- 216 (300)
T ss_dssp EEEEETTTTEEEEECT-TCCEEE-EECSS---TTCCEEEEEECTTSSEEEEET----------------TTTEEEEECT-
T ss_pred EEEEecCCCeEEEECC-CCcEEE-eeCCC---CCCCcceEEECCCCCEEEEcc----------------CCCEEEEEcC-
Confidence 55544 4678999998 677653 33211 11122233333 567888732 2357999998
Q ss_pred CCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC--ceecceEE-eCCEEEEEeC
Q 040693 286 NGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA--TIYGGASV-SNGCIYMGNG 359 (382)
Q Consensus 286 tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~--~~~~~p~~-~~g~lyv~~~ 359 (382)
+|+..... .+........+.++ ++.+|+++. ..+.|+.+|+ +|++. .+..+. ....+.++ .+|+||+++.
T Consensus 217 ~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~~-~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 217 TGEISEYD-IPTPNARPHAITAGKNSEIWFTEW-GANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp TCCEEEEE-CSSTTCCEEEEEECSTTCEEEEET-TTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS
T ss_pred CCcEEEEE-CCCCCCCceEEEECCCCCEEEecc-CCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc
Confidence 67655432 22111112234444 567888874 3589999998 57654 343432 22233344 3789999986
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00079 Score=62.67 Aligned_cols=107 Identities=11% Similarity=0.009 Sum_probs=66.9
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..+++++.|+.+..+|..+++.......... ........ ++..+..+ ..++.|..+
T Consensus 139 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~----~~i~~~~~~pdg~~lasg-----------------~~dg~i~iw 197 (343)
T 3lrv_A 139 TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSD----VEYSSGVLHKDSLLLALY-----------------SPDGILDVY 197 (343)
T ss_dssp CCEEEEEETTCCEEEEESSSSCEEEEECCCSS----CCCCEEEECTTSCEEEEE-----------------CTTSCEEEE
T ss_pred CCEEEEEeCCCcEEEEECCCCcEEEEEecCCC----CceEEEEECCCCCEEEEE-----------------cCCCEEEEE
Confidence 56788888999999999999998655533211 11122222 44445444 346889999
Q ss_pred ECCCCcEE-eeecC-CCCCCCCcceEEe-CC-EEEEeeecCCCcEEEEeCCCCcEeEEE
Q 040693 283 DASNGNVL-WSTAD-PSNGTAPGPVTVA-NG-VLFGGSTYRQGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 283 d~~tG~~~-W~~~~-~~~~~~~~~~~~~-~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~ 337 (382)
|.++++.+ -+... ... ....+.+. ++ .++.++ ++.|...|..+++.+..+
T Consensus 198 d~~~~~~~~~~~~~~h~~--~v~~l~fs~~g~~l~s~~---~~~v~iwd~~~~~~~~~~ 251 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEA--KIKEVKFADNGYWMVVEC---DQTVVCFDLRKDVGTLAY 251 (343)
T ss_dssp ESSCTTSCCEECCCCTTS--CEEEEEECTTSSEEEEEE---SSBEEEEETTSSTTCBSS
T ss_pred ECCCCCCCccEEeccCCC--CEEEEEEeCCCCEEEEEe---CCeEEEEEcCCCCcceee
Confidence 99999876 55544 221 12223332 33 555555 559999999988776443
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=0.002 Score=59.90 Aligned_cols=121 Identities=9% Similarity=0.083 Sum_probs=69.1
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC--CC-c
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS--NG-N 288 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~--tG-~ 288 (382)
.+.|+.+| +|+..-..... ....+.+. ++..+|+.. ...+.|+.+|.. +| +
T Consensus 160 ~~~l~~~~--~g~~~~~~~~~------~~~~~i~~s~dg~~lyv~~----------------~~~~~I~~~d~~~~~Gl~ 215 (326)
T 2ghs_A 160 AGSIYHVA--KGKVTKLFADI------SIPNSICFSPDGTTGYFVD----------------TKVNRLMRVPLDARTGLP 215 (326)
T ss_dssp CEEEEEEE--TTEEEEEEEEE------SSEEEEEECTTSCEEEEEE----------------TTTCEEEEEEBCTTTCCB
T ss_pred ceEEEEEe--CCcEEEeeCCC------cccCCeEEcCCCCEEEEEE----------------CCCCEEEEEEcccccCCc
Confidence 36799999 57654322110 01112222 455677763 224679999975 77 4
Q ss_pred E----EeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEe---CCEEEEEeCc
Q 040693 289 V----LWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVS---NGCIYMGNGY 360 (382)
Q Consensus 289 ~----~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~---~g~lyv~~~~ 360 (382)
. .+.. ..........+.++ ++.+|+++. ..+.|+.+|+ +|+++-++..+.....++++. ++.||+++..
T Consensus 216 ~~~~~~~~~-~~~~~~~p~gi~~d~~G~lwva~~-~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 216 TGKAEVFID-STGIKGGMDGSVCDAEGHIWNARW-GEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SSCCEEEEE-CTTSSSEEEEEEECTTSCEEEEEE-TTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred ccCceEEEE-CCCCCCCCCeeEECCCCCEEEEEe-CCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEEecC
Confidence 2 2321 11100011223344 567888774 3578999998 688888887766444555554 2689998765
Q ss_pred e
Q 040693 361 K 361 (382)
Q Consensus 361 g 361 (382)
+
T Consensus 293 ~ 293 (326)
T 2ghs_A 293 E 293 (326)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00022 Score=65.73 Aligned_cols=138 Identities=7% Similarity=-0.039 Sum_probs=78.2
Q ss_pred EEEEccCcEEEEEeCCC-CCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 208 VVAVQKSGFAWALDRDS-GSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 208 v~~~~~~g~l~ald~~t-G~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
++++..++.+..+|..+ ++.......... ......... ++..++++ ..++.+..+|
T Consensus 163 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~i~~i~~~~~~~~~l~~~-----------------~~dg~i~i~~ 222 (342)
T 1yfq_A 163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGL---KYQIRDVALLPKEQEGYACS-----------------SIDGRVAVEF 222 (342)
T ss_dssp EEEEESTTEEEEEESSCCTTCCCEEEECSC---SSCEEEEEECSGGGCEEEEE-----------------ETTSEEEEEE
T ss_pred EEEEeCCCeEEEEECCccccccceeeecCC---CCceeEEEECCCCCCEEEEE-----------------ecCCcEEEEE
Confidence 88888899999999998 765433322110 011122222 33455554 3357788877
Q ss_pred CCCC------cEEeeecCCCCC-------CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC-Cceecce
Q 040693 284 ASNG------NVLWSTADPSNG-------TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG-ATIYGGA 347 (382)
Q Consensus 284 ~~tG------~~~W~~~~~~~~-------~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~-~~~~~~p 347 (382)
..++ +.+......... .....+.+ ++.+++.++ .+|.|+.+|..+++.+..+... .....+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~ 300 (342)
T 1yfq_A 223 FDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG--SDGIISCWNLQTRKKIKNFAKFNEDSVVKI 300 (342)
T ss_dssp CCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEE--TTSCEEEEETTTTEEEEECCCCSSSEEEEE
T ss_pred EcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEec--CCceEEEEcCccHhHhhhhhcccCCCceEe
Confidence 7776 666665543210 01122223 245666666 4899999999999999887654 3333334
Q ss_pred EEeCCEEEE-EeCceeEeecCC
Q 040693 348 SVSNGCIYM-GNGYKVTVGFGN 368 (382)
Q Consensus 348 ~~~~g~lyv-~~~~g~~~~~~~ 368 (382)
. .++++++ ++.+|.....+.
T Consensus 301 ~-~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 301 A-CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp E-ECSSEEEEEEECTHHHHCSS
T ss_pred c-CCCCeEEEEecCCccccccc
Confidence 4 5555555 444543134444
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.001 Score=63.73 Aligned_cols=150 Identities=17% Similarity=0.129 Sum_probs=92.2
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..+++++.++.+..+|..+++.++.+.... .......... ++..++.+ ..++.|..+
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~-----------------~~dg~i~iw 241 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSP---RHGAVSSICIDEECCVLILG-----------------TTRGIIDIW 241 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCG---GGCCEEEEEECTTSCEEEEE-----------------ETTSCEEEE
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCC---CCCceEEEEECCCCCEEEEE-----------------cCCCeEEEE
Confidence 4678889999999999999999999887521 0112222222 45555555 345889999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE-----eCC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCC---------------
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV-----ANG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGA--------------- 341 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~-----~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~--------------- 341 (382)
|.++++.+-+....... ....+.. .++ +++.++ .++.|..+|..+++.+..+....
T Consensus 242 d~~~~~~~~~~~~~~~~-~v~~~~~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 318 (437)
T 3gre_A 242 DIRFNVLIRSWSFGDHA-PITHVEVCQFYGKNSVIVVGGS--SKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGL 318 (437)
T ss_dssp ETTTTEEEEEEBCTTCE-EEEEEEECTTTCTTEEEEEEES--TTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSG
T ss_pred EcCCccEEEEEecCCCC-ceEEEEeccccCCCccEEEEEc--CCCcEEEEEcCCCcEEEEEEcCCCCCccceeccccccc
Confidence 99999988776543210 0111101 123 444444 58999999999999888776321
Q ss_pred -----------ceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEE
Q 040693 342 -----------TIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 342 -----------~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~ 379 (382)
....+..+.+++++++.+....+.+|.+. +++.+..
T Consensus 319 ~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~ 365 (437)
T 3gre_A 319 EELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLN--ELSSSKA 365 (437)
T ss_dssp GGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETT--CGGGCEE
T ss_pred ccceecccccCCceEEEEECCceEEEecCCCCeEEEEECC--CcccceE
Confidence 01223344567766666544445666554 4554433
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0024 Score=58.85 Aligned_cols=106 Identities=7% Similarity=0.030 Sum_probs=67.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
...++.+..|+.+..+|..+++..-.+..-. ........ ++..+..+ ..++.|..+
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~-----~~v~~~~~sp~g~~l~s~-----------------~~dg~i~iw 223 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQFQIEADFIGHN-----SNINTLTASPDGTLIASA-----------------GKDGEIMLW 223 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTTEEEEEECCCC-----SCEEEEEECTTSSEEEEE-----------------ETTCEEEEE
T ss_pred ccEEEEEeCCCEEEEEECCcchhheeecCCC-----CcEEEEEEcCCCCEEEEE-----------------eCCCeEEEE
Confidence 3468888899999999999888766554211 12222222 44455544 345889999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEe-CC-EEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVA-NG-VLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
|.++++.+.+...... ...+.+. ++ .+..+. ...+..++.++++.+....
T Consensus 224 d~~~~~~~~~~~~~~~---v~~~~~sp~~~~la~~~---~~~i~v~~~~~~~~~~~~~ 275 (319)
T 3frx_A 224 NLAAKKAMYTLSAQDE---VFSLAFSPNRYWLAAAT---ATGIKVFSLDPQYLVDDLR 275 (319)
T ss_dssp ETTTTEEEEEEECCSC---EEEEEECSSSSEEEEEE---TTEEEEEEETTEEEEEEEC
T ss_pred ECCCCcEEEEecCCCc---EEEEEEcCCCCEEEEEc---CCCcEEEEeCcCeeeeccC
Confidence 9999999988875431 1222232 33 444444 5668888888777766654
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0037 Score=56.03 Aligned_cols=128 Identities=8% Similarity=-0.006 Sum_probs=71.3
Q ss_pred cEEEEE-ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee-CCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAV-QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD-ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+.++++ ..++.++.+|. +|+...... .. ........+.+ ++.+|++.. ..+.|+.+|
T Consensus 110 g~l~v~~~~~~~i~~~d~-~g~~~~~~~-~~---~~~~~~~i~~~~~g~l~v~~~----------------~~~~i~~~~ 168 (299)
T 2z2n_A 110 GDIWFTEMNGNRIGRITD-DGKIREYEL-PN---KGSYPSFITLGSDNALWFTEN----------------QNNAIGRIT 168 (299)
T ss_dssp SCEEEEETTTTEEEEECT-TCCEEEEEC-SS---TTCCEEEEEECTTSCEEEEET----------------TTTEEEEEC
T ss_pred CCEEEEecCCceEEEECC-CCCEEEecC-CC---CCCCCceEEEcCCCCEEEEeC----------------CCCEEEEEc
Confidence 345554 45678999999 777653221 11 11122233333 567887632 246799999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC--ceecceEE-eCCEEEEEeC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA--TIYGGASV-SNGCIYMGNG 359 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~--~~~~~p~~-~~g~lyv~~~ 359 (382)
+ +|+.... ..+........+.++ ++.+|+++. ..+.|+.+|+ +|++.- +..+. .......+ .+|+||+++.
T Consensus 169 ~-~g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~ 243 (299)
T 2z2n_A 169 E-SGDITEF-KIPTPASGPVGITKGNDDALWFVEI-IGNKIGRITT-SGEITE-FKIPTPNARPHAITAGAGIDLWFTEW 243 (299)
T ss_dssp T-TCCEEEE-ECSSTTCCEEEEEECTTSSEEEEET-TTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECSTTCEEEEET
T ss_pred C-CCcEEEe-eCCCCCCcceeEEECCCCCEEEEcc-CCceEEEECC-CCcEEE-EECCCCCCCceeEEECCCCCEEEecc
Confidence 9 8877642 222211111233444 467888763 3678999999 787543 33332 11223333 3688999874
|
| >2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00044 Score=68.34 Aligned_cols=205 Identities=18% Similarity=0.227 Sum_probs=109.9
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCc-------
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSG------- 215 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g------- 215 (382)
..|.|++++ |+.+|+..+.... . ......++.+++++.+| ...|++.+.+|
T Consensus 151 ~~l~aY~ld-G~~LW~idlg~ni-~------------------aGa~yt~~~V~DlDGDG--kaEIvv~TadGt~dg~g~ 208 (591)
T 2zux_A 151 VLIDAYKLD-GTKLWRINLGKNI-R------------------AGAHYTQFMVYDLDGDG--KAEVAMKTADGTKDGTGK 208 (591)
T ss_dssp CEEEEECTT-SCEEEEEECCTTS-C------------------CSTTSCCCEEECSSSSS--SCEEEEEECTTCBCTTSC
T ss_pred cEEEEEECC-CCEEEEEcCCCCc-c------------------cccccCceeEEEcCCCC--cceEEEEccCCcccCCce
Confidence 579999985 9999998876431 0 00122578889988888 45566654433
Q ss_pred ---------------------EEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCcccc-cccc-CCC
Q 040693 216 ---------------------FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHK-NFNL-KPS 270 (382)
Q Consensus 216 ---------------------~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~-~~~~-~~~ 270 (382)
.|..||..||+.+++.+..++.. ....|+... .-++..+....-++. +..+ ..+
T Consensus 209 ~ig~~~~dyrn~~g~il~GpEyL~vfdG~TG~~l~~~~~~p~rg-~~~~WGD~ygnR~drf~~~vayLDG~~Ps~v~~rG 287 (591)
T 2zux_A 209 VIGNANADYRNEQGRVLSGPEYLTVFQGSTGKELVTANFEPARG-NVSDWGDSYGNRVDRFLAGIAYLDGQRPSLIMTRG 287 (591)
T ss_dssp BCSSTTCCCBCTTSCBCSSCCEEEEEETTTCCEEEEEECSSCCC-CGGGGTCSSSSGGGCEEEEEECTTSSSCEEEEEEC
T ss_pred EecccccccccccceeecCCcEEEEEeCCCCCEEecccCCCCCC-cccccccccccccccceeeEEECCCCCceEEEecc
Confidence 49999999999999988654211 111222110 001111121111110 0000 000
Q ss_pred CCCCCCceEEEEECCCCc--EEeeecCCCCC------CCCcceEEe---C-C--EEEEeeecCCCcEEEEeCCCCcEeEE
Q 040693 271 KNSTIAGGWVAMDASNGN--VLWSTADPSNG------TAPGPVTVA---N-G--VLFGGSTYRQGPIYAMDVKTGKILWS 336 (382)
Q Consensus 271 ~~~~~~g~v~a~d~~tG~--~~W~~~~~~~~------~~~~~~~~~---~-~--~v~~~~~~~~g~l~~ld~~tG~ilw~ 336 (382)
-.....|.|+|.++++ ++|+....... .....+.+. + + -|+.++ .++| .+|+.||.
T Consensus 288 --yYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs-------~~iD-~dG~~L~s 357 (591)
T 2zux_A 288 --YYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGS-------MAVD-HDGKGMYS 357 (591)
T ss_dssp --CSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETT-------EEEC-TTSCEEEE
T ss_pred --ccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEee-------eEEC-CCCCEeee
Confidence 0122469999999996 59999875421 011222221 1 1 222222 2567 67999999
Q ss_pred EecCCceecce-----EEeCCEEEEEeCceeE-eecCCccCCCCCeEEEE
Q 040693 337 YDTGATIYGGA-----SVSNGCIYMGNGYKVT-VGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 337 ~~~~~~~~~~p-----~~~~g~lyv~~~~g~~-~~~~~~~~~~g~~l~~~ 380 (382)
..++.+-.... -..+=.+|.....+.. .+..-.|+.||++||.+
T Consensus 358 t~~gHGDa~hv~dldP~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~ 407 (591)
T 2zux_A 358 TGLGHGDALHTGDLDPGRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGV 407 (591)
T ss_dssp CSCCCCSCEEEECCCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEE
T ss_pred CCCCCCCeeEEeecCCCCCCcEEEEEecCCCCCCccEEEECCCCcEEEEc
Confidence 98765321111 1122356766554211 01112588999999976
|
| >2zuy_A YESX protein; beta-propeller, lyase; 1.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0046 Score=61.41 Aligned_cols=224 Identities=17% Similarity=0.185 Sum_probs=114.2
Q ss_pred ceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCC---eEEEEcCCCCCCCcchhhccc-ccCCCCCC
Q 040693 55 GSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRN---HVYIATGNLYSVPLHIRQCQE-ENNQTTPT 130 (382)
Q Consensus 55 g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~v~v~~~~~~~~~~~~~~~~~-~~~~~~~~ 130 (382)
..|.|+++ +|+++|+.++.+.. .+| ..+.+..++|-+++ -|++.+.+... .+ +....-+.
T Consensus 155 ~~l~aY~l-dG~~LW~idlg~Ni------~aG-ahyt~~~V~DlDGDGkaEIvv~TadGt~--------dg~g~vigd~~ 218 (620)
T 2zuy_A 155 VLIDAYKL-DGTFLWRINLGRNI------RAG-AHYTQFMVYDLDGDGKAEIAMKTADGTT--------DGKGHIIGDEQ 218 (620)
T ss_dssp CEEEEECT-TSCEEEEEECCTTS------CCS-TTSCCCEEECSSSSSSCEEEEEECTTCB--------CTTSCBCSCTT
T ss_pred cEEEEEEC-CCCEEEEEcCCCCc------ccc-cccCceeEEEcCCCCcceEEEEccCCcc--------cCcceeecccc
Confidence 37899998 59999999885421 111 11122334444433 46665543110 00 00000000
Q ss_pred ----CCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCc----ccccccccCCCCCCCCCCCCCCCCCCCceEEEe-eeC
Q 040693 131 ----SPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYD----VWFGACNWYLNPNCPPGPSPDADFGEAPMMLSM-YRN 201 (382)
Q Consensus 131 ----~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~ 201 (382)
..++++..+ ...|..+|.+||+.+++.++.+.. .|. . .++-.....++.+ ..+
T Consensus 219 ~dyr~~~g~il~G--~eyL~vfdG~TG~~l~t~~~~p~rg~~~~WG------D----------~yGnR~drf~~~vayLD 280 (620)
T 2zuy_A 219 ADFRNEQGRILSG--PEYLTVFKGETGEALTTVEYEPPRGKLEDWG------D----------GYGNRMDRFLAGTAYLD 280 (620)
T ss_dssp CCCBCTTSCBCSS--CCEEEEEETTTCCEEEEEECSSCCCSGGGGT------S----------SSSTTTTCEEEEEECTT
T ss_pred cccccccceEecC--CeEEEEEcCCCcceeeecccCCCcCcccccc------c----------cccccccccceeEEecC
Confidence 013333332 367999999999999999874321 110 0 0111112222222 344
Q ss_pred ceeecEEEEEc---cCcEEEEEeCCCCC--eeeeeccCCCC---CCCCcccceee-----e-CCeEEEEecCcccccccc
Q 040693 202 KVKHDIVVAVQ---KSGFAWALDRDSGS--LIWSMEAGPGG---LGGGAMWGAAT-----D-ERRIYTNIANSQHKNFNL 267 (382)
Q Consensus 202 g~~~~~v~~~~---~~g~l~ald~~tG~--~~W~~~~~~~~---~~g~~~~~~~~-----~-~~~v~~~~~~~~~~~~~~ 267 (382)
|. ...++++. ....+.|+|..+|+ .+|+++...+. ..+.....+.+ | ..-|+++
T Consensus 281 G~-~Ps~v~~rG~Ytr~~v~A~d~~~g~L~~~W~~ds~~~~~~~~~gqg~H~~svaDVDGDG~dEIv~G----------- 348 (620)
T 2zuy_A 281 GE-RPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYG----------- 348 (620)
T ss_dssp CC--CEEEEEECSSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGTTCCCSSCEEECCSSSSSCEEEET-----------
T ss_pred CC-CceEEEecCcccceeEEEEEccCCceeeeeEecCCCCcccccccccCcCceEEecCCCCceeEEEe-----------
Confidence 54 33444432 23579999998884 79999875321 11111112211 1 1223321
Q ss_pred CCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe-------CCEEEEeeec--CCCcEEEEeCCCCcEeEEEe
Q 040693 268 KPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-------NGVLFGGSTY--RQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 268 ~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-------~~~v~~~~~~--~~g~l~~ld~~tG~ilw~~~ 338 (382)
. .++| .+|+.+|+....- ...+.+. +-.||.+... ........|++||+++|+.+
T Consensus 349 ----------s-~~iD-~dG~~L~st~~gH----GDa~hv~d~dP~rpGlev~~~~E~~~~~~G~~~~DA~tG~vlw~~~ 412 (620)
T 2zuy_A 349 ----------A-MAVD-HDGTGLYSTGLGH----GDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVH 412 (620)
T ss_dssp ----------T-EEEC-TTSSEEEECSCCC----CSCEEEECSCTTSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEEC
T ss_pred ----------e-eEEC-CCCCEEeecCCCC----CceeEEEecCCCCCCCEEEEEecCCCCCCceEEEECCCCcEEEEec
Confidence 1 3566 7899999988633 2222221 1245555421 01256678999999999997
Q ss_pred cC
Q 040693 339 TG 340 (382)
Q Consensus 339 ~~ 340 (382)
..
T Consensus 413 ~~ 414 (620)
T 2zuy_A 413 AG 414 (620)
T ss_dssp CS
T ss_pred Cc
Confidence 54
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0011 Score=61.09 Aligned_cols=148 Identities=9% Similarity=0.050 Sum_probs=86.9
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+|+.+-++......+. -..+..+ +..++.+..|+.+..+|
T Consensus 86 D~~v~~wd~~~~~~~~~~~~h~~~v~---------------------------~~~~~~~---~~~l~s~s~D~~i~vwd 135 (319)
T 3frx_A 86 DKTLRLWDVATGETYQRFVGHKSDVM---------------------------SVDIDKK---ASMIISGSRDKTIKVWT 135 (319)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEE---------------------------EEEECTT---SCEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCCCeeEEEccCCCcEE---------------------------EEEEcCC---CCEEEEEeCCCeEEEEE
Confidence 38999999999998876654332111 0111111 46788888999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee----eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT----DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
.. ++.+-....... ......+.+.. +...++.+ ..++.|..+|.++++..-+.....
T Consensus 136 ~~-~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~l~s~-----------------~~d~~i~~wd~~~~~~~~~~~~h~ 196 (319)
T 3frx_A 136 IK-GQCLATLLGHND-WVSQVRVVPNEKADDDSVTIISA-----------------GNDKMVKAWNLNQFQIEADFIGHN 196 (319)
T ss_dssp TT-SCEEEEECCCSS-CEEEEEECCC------CCEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCC
T ss_pred CC-CCeEEEEeccCC-cEEEEEEccCCCCCCCccEEEEE-----------------eCCCEEEEEECCcchhheeecCCC
Confidence 86 444443331110 00000111100 12234433 345889999999998876665433
Q ss_pred CCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc
Q 040693 298 NGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 298 ~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
.. ...+.+ ++.+++.++ .++.|...|..+++.+.++.....
T Consensus 197 ~~--v~~~~~sp~g~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~ 239 (319)
T 3frx_A 197 SN--INTLTASPDGTLIASAG--KDGEIMLWNLAAKKAMYTLSAQDE 239 (319)
T ss_dssp SC--EEEEEECTTSSEEEEEE--TTCEEEEEETTTTEEEEEEECCSC
T ss_pred Cc--EEEEEEcCCCCEEEEEe--CCCeEEEEECCCCcEEEEecCCCc
Confidence 21 122223 234666666 489999999999999988876544
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.0084 Score=55.10 Aligned_cols=127 Identities=11% Similarity=0.034 Sum_probs=73.8
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-.+.+ ........+..++.||+..+.... ......+..+|+.+. .|+.-
T Consensus 117 ~~~~~~d~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~--~W~~~ 180 (315)
T 4asc_A 117 DSVMCYDRLSF--KWGESDPLP--YVVYGHTVLSHMDLVYVIGGKGSD----------RKCLNKMCVYDPKKF--EWKEL 180 (315)
T ss_dssp CCEEEEETTTT--EEEECCCCS--SCCBSCEEEEETTEEEEECCBCTT----------SCBCCCEEEEETTTT--EEEEC
T ss_pred ceEEEECCCCC--cEeECCCCC--CcccceeEEEECCEEEEEeCCCCC----------CcccceEEEEeCCCC--eEEEC
Confidence 45899999876 487654321 122333344467788876443110 123466999999876 57753
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeecCC----CcEEEEeCCCCcEeEEEecC--Cc-eecceEEeCCEEEEEeCc
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTYRQ----GPIYAMDVKTGKILWSYDTG--AT-IYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~~~----g~l~~ld~~tG~ilw~~~~~--~~-~~~~p~~~~g~lyv~~~~ 360 (382)
.+.+. ......+.++.+|+...... ..++++|+++. .|+.-.+ .. ...+.++.+++||+..+.
T Consensus 181 ~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~ 252 (315)
T 4asc_A 181 APMQTAR-SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN--KWAPFEAFPQERSSLSLVSLVGTLYAIGGF 252 (315)
T ss_dssp CCCSSCC-BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEEEEE
T ss_pred CCCCCch-hceEEEEECCEEEEEeccCCCCccceEEEEECCCC--eEEECCCCCCcccceeEEEECCEEEEECCc
Confidence 33322 23334455777666542111 25899999876 5765332 22 334456689999998664
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0022 Score=59.22 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=74.3
Q ss_pred CcEEEEEeCCCCCeeeeec-cCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCC---
Q 040693 214 SGFAWALDRDSGSLIWSME-AGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG--- 287 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~-~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG--- 287 (382)
.+.++.+|.++|+..-... .. ...+.++ +++.+|++.. ..+.|+.+|..+.
T Consensus 164 ~g~v~~~d~~~~~~~~~~~~~~-------~p~gia~~~dg~~lyv~d~----------------~~~~I~~~~~~~~~~~ 220 (322)
T 2fp8_A 164 TGRLIKYDPSTKETTLLLKELH-------VPGGAEVSADSSFVLVAEF----------------LSHQIVKYWLEGPKKG 220 (322)
T ss_dssp CEEEEEEETTTTEEEEEEEEES-------CCCEEEECTTSSEEEEEEG----------------GGTEEEEEESSSTTTT
T ss_pred CceEEEEeCCCCEEEEeccCCc-------cCcceEECCCCCEEEEEeC----------------CCCeEEEEECCCCcCC
Confidence 3789999998886532221 11 1112233 4457888732 2367999998753
Q ss_pred cEEeeecCCCCCCCCcceEEe-CCEEEEeeec---------CCCcEEEEeCCCCcEeEEEecCCc----eecceEEeCCE
Q 040693 288 NVLWSTADPSNGTAPGPVTVA-NGVLFGGSTY---------RQGPIYAMDVKTGKILWSYDTGAT----IYGGASVSNGC 353 (382)
Q Consensus 288 ~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~---------~~g~l~~ld~~tG~ilw~~~~~~~----~~~~p~~~~g~ 353 (382)
+..--...+. ..-+.++ ++.+|++... ..+.|+.+|++ |+++-.+..+.+ ...+.+..+++
T Consensus 221 ~~~~~~~~~g----P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~~~g~ 295 (322)
T 2fp8_A 221 TAEVLVKIPN----PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQEHDGL 295 (322)
T ss_dssp CEEEEEECSS----EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEEETTE
T ss_pred ccceEEeCCC----CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEEeCCE
Confidence 2221112211 1223444 4678888751 03679999985 998888876542 22334557999
Q ss_pred EEEEeCceeEeecCCcc
Q 040693 354 IYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 354 lyv~~~~g~~~~~~~~~ 370 (382)
|||++.....+..+.+.
T Consensus 296 L~v~~~~~~~i~~~~~~ 312 (322)
T 2fp8_A 296 LYIGTLFHGSVGILVYD 312 (322)
T ss_dssp EEEECSSCSEEEEEEC-
T ss_pred EEEeecCCCceEEEecc
Confidence 99998655544444443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.0025 Score=57.75 Aligned_cols=99 Identities=10% Similarity=0.144 Sum_probs=63.5
Q ss_pred cEEEEEccCcEEEEEeCC-CCCe---eeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 206 DIVVAVQKSGFAWALDRD-SGSL---IWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~-tG~~---~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
..+++...++.++.+|.. +|++ .-.+... .+ ...+.+. .++.+|++. .+.|.
T Consensus 184 ~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~----~~-~p~~i~~d~~G~l~v~~------------------~~~v~ 240 (296)
T 3e5z_A 184 NLLVSDTGDNATHRYCLNARGETEYQGVHFTVE----PG-KTDGLRVDAGGLIWASA------------------GDGVH 240 (296)
T ss_dssp CEEEEETTTTEEEEEEECSSSCEEEEEEEECCS----SS-CCCSEEEBTTSCEEEEE------------------TTEEE
T ss_pred CEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCC----CC-CCCeEEECCCCCEEEEc------------------CCeEE
Confidence 344666777889999986 6765 2222111 11 1123333 356788873 36799
Q ss_pred EEECCCCcEEeeecCCCCCCCCcceEEe---CCEEEEeeecCCCcEEEEeCCCCcEe
Q 040693 281 AMDASNGNVLWSTADPSNGTAPGPVTVA---NGVLFGGSTYRQGPIYAMDVKTGKIL 334 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~g~l~~ld~~tG~il 334 (382)
.+|++ |+.+-++..+.. ...+.+. ++.+|+++ .+.|+.+++++.++.
T Consensus 241 ~~~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t---~~~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 241 VLTPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTV---STEFWSIETNVRGLE 290 (296)
T ss_dssp EECTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEE---TTEEEEEECSCCBCC
T ss_pred EECCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEc---CCeEEEEEccccccc
Confidence 99986 888877776653 2333442 35799988 679999999988764
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.0032 Score=57.95 Aligned_cols=125 Identities=12% Similarity=0.163 Sum_probs=72.4
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-.+.+ ........++.++.||+..+.... .....+..+|+++. .|+.-
T Consensus 165 ~~~~~yd~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~--~W~~~ 227 (315)
T 4asc_A 165 NKMCVYDPKKF--EWKELAPMQ--TARSLFGATVHDGRIIVAAGVTDT-----------GLTSSAEVYSITDN--KWAPF 227 (315)
T ss_dssp CCEEEEETTTT--EEEECCCCS--SCCBSCEEEEETTEEEEEEEECSS-----------SEEEEEEEEETTTT--EEEEE
T ss_pred ceEEEEeCCCC--eEEECCCCC--CchhceEEEEECCEEEEEeccCCC-----------CccceEEEEECCCC--eEEEC
Confidence 46999999865 687654321 122333344467788876443110 12346999999887 67754
Q ss_pred C--CCCCCCCcceEEeCCEEEEeeecC-------------CCcEEEEeCCCCcEeEEEecCC-ceecceEEeCCEEEEEe
Q 040693 295 D--PSNGTAPGPVTVANGVLFGGSTYR-------------QGPIYAMDVKTGKILWSYDTGA-TIYGGASVSNGCIYMGN 358 (382)
Q Consensus 295 ~--~~~~~~~~~~~~~~~~v~~~~~~~-------------~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~~~g~lyv~~ 358 (382)
. +... ........++.+|+..... ...++++|+++. .|+.-.+. ....+.++.+++||+..
T Consensus 228 ~~~p~~r-~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~r~~~~~~~~~~~l~v~~ 304 (315)
T 4asc_A 228 EAFPQER-SSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK--KWEGVLREIAYAAGATFLPVRLNVLR 304 (315)
T ss_dssp CCCSSCC-BSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT--EEEEEESCSSCCSSCEEEEEEECGGG
T ss_pred CCCCCcc-cceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC--hhhhhccCCcCccceEEeCCEEEEEE
Confidence 3 3322 2333445566666653200 134889999866 47654333 34456777889998864
Q ss_pred C
Q 040693 359 G 359 (382)
Q Consensus 359 ~ 359 (382)
.
T Consensus 305 ~ 305 (315)
T 4asc_A 305 L 305 (315)
T ss_dssp S
T ss_pred e
Confidence 4
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0017 Score=60.98 Aligned_cols=219 Identities=12% Similarity=0.047 Sum_probs=121.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+ +.+-......... . ......+.+++..++.+..+
T Consensus 140 d~~i~iwd~~~-~~~~~~~~~~~~~--------~--~v~~~~~~~~~~~l~~~~~d------------------------ 184 (383)
T 3ei3_B 140 RGATTLRDFSG-SVIQVFAKTDSWD--------Y--WYCCVDVSVSRQMLATGDST------------------------ 184 (383)
T ss_dssp TTEEEEEETTS-CEEEEEECCCCSS--------C--CEEEEEEETTTTEEEEEETT------------------------
T ss_pred CCEEEEEECCC-CceEEEeccCCCC--------C--CeEEEEECCCCCEEEEECCC------------------------
Confidence 88999999875 4443333211100 0 01235566676777776553
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|. +++.+..+......+. -..+..++ ...++++..
T Consensus 185 ---------~~i~i~d~-~~~~~~~~~~h~~~v~---------------------------~~~~~~~~--~~~l~s~~~ 225 (383)
T 3ei3_B 185 ---------GRLLLLGL-DGHEIFKEKLHKAKVT---------------------------HAEFNPRC--DWLMATSSV 225 (383)
T ss_dssp ---------SEEEEEET-TSCEEEEEECSSSCEE---------------------------EEEECSSC--TTEEEEEET
T ss_pred ---------CCEEEEEC-CCCEEEEeccCCCcEE---------------------------EEEECCCC--CCEEEEEeC
Confidence 89999998 6888888765432111 11122222 237888889
Q ss_pred CcEEEEEeCCC----CCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCC
Q 040693 214 SGFAWALDRDS----GSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASN 286 (382)
Q Consensus 214 ~g~l~ald~~t----G~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~t 286 (382)
|+.+..+|..+ ++.+...... ........ ++..++++ ..++.|..+|.++
T Consensus 226 d~~i~iwd~~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~~l~~~-----------------~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 226 DATVKLWDLRNIKDKNSYIAEMPHE------KPVNAAYFNPTDSTKLLTT-----------------DQRNEIRVYSSYD 282 (383)
T ss_dssp TSEEEEEEGGGCCSTTCEEEEEECS------SCEEEEEECTTTSCEEEEE-----------------ESSSEEEEEETTB
T ss_pred CCEEEEEeCCCCCcccceEEEecCC------CceEEEEEcCCCCCEEEEE-----------------cCCCcEEEEECCC
Confidence 99999999998 5555544321 12222222 33455544 3458899999999
Q ss_pred CcEEeeecCCCCCC--CCcc--eEE--eCCEEEEe-------eecCCCcEEEEeCCCCcEeEEEecCC--ceecceEE-e
Q 040693 287 GNVLWSTADPSNGT--APGP--VTV--ANGVLFGG-------STYRQGPIYAMDVKTGKILWSYDTGA--TIYGGASV-S 350 (382)
Q Consensus 287 G~~~W~~~~~~~~~--~~~~--~~~--~~~~v~~~-------~~~~~g~l~~ld~~tG~ilw~~~~~~--~~~~~p~~-~ 350 (382)
++..-+........ ...+ ... .+..+.+. +...++.|..+|..+|+.+.++.... ........ .
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~ 362 (383)
T 3ei3_B 283 WSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQLLLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP 362 (383)
T ss_dssp TTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTTCTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT
T ss_pred CccccccccccccccccccceEEeccCCCCceEEEecCCcccccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec
Confidence 98765544221000 0000 011 11222222 11148999999999999998887532 23333233 3
Q ss_pred CCEEEEEeCceeEeecCCcc
Q 040693 351 NGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 351 ~g~lyv~~~~g~~~~~~~~~ 370 (382)
+++++++.++|. +.+|.++
T Consensus 363 ~g~~l~s~sd~~-i~iw~~~ 381 (383)
T 3ei3_B 363 TGDVLASGMGFN-ILIWNRE 381 (383)
T ss_dssp TSSEEEEEETTE-EEEEECC
T ss_pred CccEEEEecCCc-EEEEecC
Confidence 566666555544 5666654
|
| >3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0035 Score=62.54 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=38.1
Q ss_pred EEEEECCCC--cEEeeecCC-----CCCCCCcceEEeCC-EEEEeeec---------CCCcEEEEeCCCCcEeEEEecC
Q 040693 279 WVAMDASNG--NVLWSTADP-----SNGTAPGPVTVANG-VLFGGSTY---------RQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 279 v~a~d~~tG--~~~W~~~~~-----~~~~~~~~~~~~~~-~v~~~~~~---------~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
.+.||.++. +++|++... .....++.-...++ .++.-... ..++|.=++.++.+++|++.+.
T Consensus 472 ~y~ID~~~~Tv~~vw~y~~~~g~~~yS~~~gs~Q~L~nGN~li~~g~~~~~~~~g~~~~~~i~E~~~~~~evv~e~~~~ 550 (571)
T 3elq_A 472 EYKIDEKKGTVQQVWEYGKERGYDFYSPITSIIEYQADRNTMFGFGGSIHLFDVGQPTVGKLNEIDYKTKEVKVEIDVL 550 (571)
T ss_dssp EEEEETTTTEEEEEEEECGGGGGGGCCSSCCEEEEETTTTEEEEEEEEETTTSTTSEEEEEEEEEETTTCCEEEEEEEE
T ss_pred EEEEcCCCCEEEEEEEecCCCCCCcccccccccEECCCCCEEEEecccccccccCCCCceeEEEECCCCCEEEEEEEec
Confidence 456999977 899999521 11222333334554 44333210 0467888999888899998764
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00041 Score=71.37 Aligned_cols=180 Identities=14% Similarity=0.094 Sum_probs=101.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+|+.+.++......+. -..+..+ +..|++++.|+.+..+|
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~~v~---------------------------~~~~s~~---~~~l~s~s~D~~i~iwd 500 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTKDVL---------------------------SVAFSLD---NRQIVSASRDRTIKLWN 500 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSCEE---------------------------EEEECTT---SSCEEEEETTSCEEEEC
T ss_pred CCcEEEEECCCCcceeEEeCCCCCEE---------------------------EEEEeCC---CCEEEEEeCCCEEEEEE
Confidence 38999999999998877654332111 0111222 35677888899999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eC--CeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DE--RRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS 297 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~--~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~ 297 (382)
... +........... .......... ++ ..++.+ ..++.|..+|+++++..-+.....
T Consensus 501 ~~~-~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~-----------------s~d~~v~vwd~~~~~~~~~~~~h~ 561 (694)
T 3dm0_A 501 TLG-ECKYTISEGGEG-HRDWVSCVRFSPNTLQPTIVSA-----------------SWDKTVKVWNLSNCKLRSTLAGHT 561 (694)
T ss_dssp TTS-CEEEEECSSTTS-CSSCEEEEEECSCSSSCEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCS
T ss_pred CCC-CcceeeccCCCC-CCCcEEEEEEeCCCCcceEEEE-----------------eCCCeEEEEECCCCcEEEEEcCCC
Confidence 763 444443321110 0001111111 11 234443 345889999999999887765443
Q ss_pred CCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCC
Q 040693 298 NGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSG 374 (382)
Q Consensus 298 ~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g 374 (382)
.. ...+.+ ++.++..++ .++.|...|..+++.+.+......+. +... .++.++++..++. +.+|.+ .++
T Consensus 562 ~~--v~~v~~spdg~~l~sg~--~Dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~sp~~~~l~~~~~~~-i~iwd~--~~~ 633 (694)
T 3dm0_A 562 GY--VSTVAVSPDGSLCASGG--KDGVVLLWDLAEGKKLYSLEANSVIH-ALCFSPNRYWLCAATEHG-IKIWDL--ESK 633 (694)
T ss_dssp SC--EEEEEECTTSSEEEEEE--TTSBCEEEETTTTEEEECCBCSSCEE-EEEECSSSSEEEEEETTE-EEEEET--TTT
T ss_pred CC--EEEEEEeCCCCEEEEEe--CCCeEEEEECCCCceEEEecCCCcEE-EEEEcCCCcEEEEEcCCC-EEEEEC--CCC
Confidence 21 122233 234666666 49999999999999988776544322 2223 3455555544433 445544 345
Q ss_pred CeEE
Q 040693 375 TSLY 378 (382)
Q Consensus 375 ~~l~ 378 (382)
+.+-
T Consensus 634 ~~~~ 637 (694)
T 3dm0_A 634 SIVE 637 (694)
T ss_dssp EEEE
T ss_pred CChh
Confidence 5443
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0012 Score=62.03 Aligned_cols=94 Identities=10% Similarity=-0.049 Sum_probs=47.4
Q ss_pred eEEEEECCCCcEEeeecCCC-----CCCCCcceEEeCCEEEEeee-------cCCCcEEEEeCCCCcEeEEEecCCc---
Q 040693 278 GWVAMDASNGNVLWSTADPS-----NGTAPGPVTVANGVLFGGST-------YRQGPIYAMDVKTGKILWSYDTGAT--- 342 (382)
Q Consensus 278 ~v~a~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~v~~~~~-------~~~g~l~~ld~~tG~ilw~~~~~~~--- 342 (382)
.|+.+|+++|+.......+. .........-++..+++... .....|+.+|+++|++. ++.....
T Consensus 265 ~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~~~ 343 (388)
T 3pe7_A 265 FIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVARHDTSWK 343 (388)
T ss_dssp EEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEEECCCCCC
T ss_pred eEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-EeccccCccc
Confidence 49999999998655444332 00111123334444443221 13568999999988763 3322222
Q ss_pred --------eecceEE--eCCEEEEEeCceeEeecCCccCC
Q 040693 343 --------IYGGASV--SNGCIYMGNGYKVTVGFGNKNFT 372 (382)
Q Consensus 343 --------~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~ 372 (382)
....+.. .+.+|++.+..+....+|.++..
T Consensus 344 ~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~ 383 (388)
T 3pe7_A 344 VFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLP 383 (388)
T ss_dssp CBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECC
T ss_pred ccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECC
Confidence 2344444 33466666654343445555543
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0076 Score=58.00 Aligned_cols=141 Identities=9% Similarity=0.088 Sum_probs=75.6
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCccc-ceeee--CCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMW-GAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~-~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
++.||+...++.++.+|.++++.............+.... ..+++ ++.+|++.. ..+.|+.
T Consensus 230 ~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~----------------~~~~I~~ 293 (409)
T 3hrp_A 230 EEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ----------------NLSSVYK 293 (409)
T ss_dssp SSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET----------------TTTEEEE
T ss_pred CCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC----------------CCCEEEE
Confidence 4567777778899999999887544322111111111112 34443 688998732 3467888
Q ss_pred EECCCCcEEeeecCC-C-CC---------C-CCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC--c----
Q 040693 282 MDASNGNVLWSTADP-S-NG---------T-APGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA--T---- 342 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~-~-~~---------~-~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~--~---- 342 (382)
+|.. |+........ . .. . ....+.++ ++.+|++....++.|..+|+.+|++.--.-.+. +
T Consensus 294 ~~~~-g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g 372 (409)
T 3hrp_A 294 ITPD-GECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDG 372 (409)
T ss_dssp ECTT-CCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCB
T ss_pred EecC-CCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCC
Confidence 8865 4433222111 0 00 0 11123343 466887752136789999987888654333211 0
Q ss_pred -----eecce---EE-eCCEEEEEeCcee
Q 040693 343 -----IYGGA---SV-SNGCIYMGNGYKV 362 (382)
Q Consensus 343 -----~~~~p---~~-~~g~lyv~~~~g~ 362 (382)
.+..| ++ .++.|||+.....
T Consensus 373 ~~~~~~~~~P~giavd~~g~lyVad~~n~ 401 (409)
T 3hrp_A 373 TPLEATFNYPYDICYDGEGGYWIAEAWGK 401 (409)
T ss_dssp STTTCCBSSEEEEEECSSSEEEEEESTTC
T ss_pred ChhceEeCCceEEEEcCCCCEEEEECCCC
Confidence 12223 33 3589999987544
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0015 Score=68.51 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=81.9
Q ss_pred ecE-EEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDI-VVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~-v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
++. |++++.++-|+.+|..+|+.. .+....+............ .++.+++++ . +.|..+
T Consensus 416 ~g~~lWigt~~~Gl~~~d~~~~~~~-~~~~~~~~l~~~~v~~i~~d~~g~lwigt-----------------~-~Gl~~~ 476 (795)
T 4a2l_A 416 KKSLVYIGTHAGGLSILHRNSGQVE-NFNQRNSQLVNENVYAILPDGEGNLWLGT-----------------L-SALVRF 476 (795)
T ss_dssp TTTEEEEEETTTEEEEEETTTCCEE-EECTTTSCCSCSCEEEEEECSSSCEEEEE-----------------S-SCEEEE
T ss_pred CCCEEEEEeCcCceeEEeCCCCcEE-EeecCCCCcCCCeeEEEEECCCCCEEEEe-----------------c-CceeEE
Confidence 345 888988667999999988743 3332111111222333333 357788873 2 459999
Q ss_pred ECCCCcEEeeecCC--CC--CCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEec---CC----ceecceEE-
Q 040693 283 DASNGNVLWSTADP--SN--GTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDT---GA----TIYGGASV- 349 (382)
Q Consensus 283 d~~tG~~~W~~~~~--~~--~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~---~~----~~~~~p~~- 349 (382)
|+++++...-.... .. ......+..+ ++.+|+++ .+.|+.+|.++++. ++.. .. ....+...
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt---~~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d 551 (795)
T 4a2l_A 477 NPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG---EEGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEA 551 (795)
T ss_dssp ETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE---SSCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEEC
T ss_pred eCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEe---CCceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEEC
Confidence 99988665432220 00 0111223333 57899998 47899999988776 4431 11 11222222
Q ss_pred eCCEEEEEeCceeEeecCCccCCCCC
Q 040693 350 SNGCIYMGNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 350 ~~g~lyv~~~~g~~~~~~~~~~~~g~ 375 (382)
.+|+|++++..| ++.++..+++
T Consensus 552 ~~g~lWigT~~G----l~~~d~~~~~ 573 (795)
T 4a2l_A 552 SNGIIWVGTREG----FYCFNEKDKQ 573 (795)
T ss_dssp TTSCEEEEESSC----EEEEETTTTE
T ss_pred CCCCEEEEeCCC----ceeECCCCCc
Confidence 468999998753 4556665553
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.0074 Score=59.85 Aligned_cols=143 Identities=16% Similarity=0.237 Sum_probs=82.0
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
..|+++..++.+..+|. +++.+....... ........ ++..+... ..++.|..+|
T Consensus 398 ~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~-----~~v~~~~~s~d~~~l~~~-----------------~~d~~v~~w~ 454 (577)
T 2ymu_A 398 QTIASASDDKTVKLWNR-NGQLLQTLTGHS-----SSVWGVAFSPDDQTIASA-----------------SDDKTVKLWN 454 (577)
T ss_dssp SCEEEEETTSEEEEECT-TCCEEEEEECCS-----SCEEEEEECTTSSEEEEE-----------------ETTSEEEEEE
T ss_pred CEEEEEeCCCEEEEEeC-CCCEEEEecCCC-----CCeEEEEECCCCCEEEEE-----------------cCCCEEEEEE
Confidence 46777888899999995 577776655321 12222222 44555554 3347788888
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCc
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGY 360 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~ 360 (382)
. +++.+.+....... ...+.+ ++.++..++ .++.|...|. +|+.+.++...........+ .+++++++.+.
T Consensus 455 ~-~~~~~~~~~~~~~~--v~~~~~spd~~~las~~--~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~ 528 (577)
T 2ymu_A 455 R-NGQLLQTLTGHSSS--VRGVAFSPDGQTIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 528 (577)
T ss_dssp T-TSCEEEEEECCSSC--EEEEEECTTSCEEEEEE--TTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET
T ss_pred C-CCCEEEEEcCCCCC--EEEEEEcCCCCEEEEEe--CCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEEC
Confidence 5 67766665543321 122223 234555555 4899999995 68888887654333333333 35555554443
Q ss_pred eeEeecCCccCCCCCeEEEE
Q 040693 361 KVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 361 g~~~~~~~~~~~~g~~l~~~ 380 (382)
...+.+|. .+|+.+-.+
T Consensus 529 dg~v~lwd---~~~~~~~~~ 545 (577)
T 2ymu_A 529 DKTVKLWN---RNGQLLQTL 545 (577)
T ss_dssp TSEEEEEC---TTSCEEEEE
T ss_pred cCEEEEEe---CCCCEEEEE
Confidence 34466776 356766554
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0071 Score=58.18 Aligned_cols=223 Identities=13% Similarity=0.041 Sum_probs=120.0
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.+++...-..... ....+.++..+.+++.+++.+..+
T Consensus 186 D~~v~iwd~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~~g~~d------------------------ 230 (435)
T 4e54_B 186 EGTTRLQDFKGNILRVFASSD-----------TINIWFCSLDVSASSRMVVTGDNV------------------------ 230 (435)
T ss_dssp SSCEEEEETTSCEEEEEECCS-----------SCSCCCCCEEEETTTTEEEEECSS------------------------
T ss_pred CCEEEEeeccCCceeEEeccC-----------CCCccEEEEEECCCCCEEEEEeCC------------------------
Confidence 899999999776554333221 111222345677777777776543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceE-EEeeeCceeecEEEEEc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM-LSMYRNKVKHDIVVAVQ 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~v~~~~ 212 (382)
+.|..+|.. |+.+.++..... ++. ..+..++ ..+++.+.
T Consensus 231 ---------g~i~~wd~~-~~~~~~~~~h~~----------------------------~v~~v~~~p~~--~~~~~s~s 270 (435)
T 4e54_B 231 ---------GNVILLNMD-GKELWNLRMHKK----------------------------KVTHVALNPCC--DWFLATAS 270 (435)
T ss_dssp ---------SBEEEEESS-SCBCCCSBCCSS----------------------------CEEEEEECTTC--SSEEEEEE
T ss_pred ---------CcEeeeccC-cceeEEEecccc----------------------------eEEeeeecCCC--ceEEEEec
Confidence 889999975 666654433221 111 1122223 45777888
Q ss_pred cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
.|+.+..+|..+++..-.+.... ........... ++..|+.+ ..++.|..+|.++++..
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~l~s~-----------------~~D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSL--PHRHPVNAACFSPDGARLLTT-----------------DQKSEIRVYSASQWDCP 331 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCC--BCSSCEEECCBCTTSSEEEEE-----------------ESSSCEEEEESSSSSSE
T ss_pred CcceeeEEecccccccceEEEee--eccccccceeECCCCCeeEEE-----------------cCCCEEEEEECCCCccc
Confidence 89999999988776443332111 00011111111 45556555 34588999999999766
Q ss_pred eeecCCCCCC--CCcc--eEE--eCCEEEEeee----------cCCCcEEEEeCCCCcEeEEEecCCc-eecce-EE-eC
Q 040693 291 WSTADPSNGT--APGP--VTV--ANGVLFGGST----------YRQGPIYAMDVKTGKILWSYDTGAT-IYGGA-SV-SN 351 (382)
Q Consensus 291 W~~~~~~~~~--~~~~--~~~--~~~~v~~~~~----------~~~g~l~~ld~~tG~ilw~~~~~~~-~~~~p-~~-~~ 351 (382)
-......... ...+ ... .+..+.++.. ...+.|..+|..+|+++.+...+.. ...+. .. .+
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspd 411 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPM 411 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCC
Confidence 5543222100 0011 111 1223333321 1235688999999999988754432 22222 22 36
Q ss_pred CEEEEEeCceeEeecCCccC
Q 040693 352 GCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 352 g~lyv~~~~g~~~~~~~~~~ 371 (382)
++++++.+++. +.+|.+..
T Consensus 412 g~~lasg~d~~-i~iW~~~~ 430 (435)
T 4e54_B 412 GDTLASAMGYH-ILIWSQQE 430 (435)
T ss_dssp SSCEEEECSSE-EEECCCC-
T ss_pred CCEEEEEcCCc-EEEEECCc
Confidence 67777666554 56776543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0027 Score=57.69 Aligned_cols=108 Identities=9% Similarity=0.060 Sum_probs=58.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCC--------CCCCcccceee-----eCCeEEEEecCccccccccCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG--------LGGGAMWGAAT-----DERRIYTNIANSQHKNFNLKPSK 271 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~--------~~g~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~ 271 (382)
+..+++++.++.+..+|..+++.+-.+...... ........... .+..++++
T Consensus 124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~--------------- 188 (351)
T 3f3f_A 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVS--------------- 188 (351)
T ss_dssp CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEE---------------
T ss_pred CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEe---------------
Confidence 457888889999999999999876554421100 00001111111 24455554
Q ss_pred CCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe-CC-----EEEEeeecCCCcEEEEeCCCC
Q 040693 272 NSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-NG-----VLFGGSTYRQGPIYAMDVKTG 331 (382)
Q Consensus 272 ~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~-----~v~~~~~~~~g~l~~ld~~tG 331 (382)
..++.+...+..+++..-.............+.+. ++ +++.++ .++.|..+|..++
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~--~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 189 --ALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC--KDGRIRIFKITEK 250 (351)
T ss_dssp --ETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE--TTSCEEEEEEEEC
T ss_pred --cCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc--CCCeEEEEeCCCC
Confidence 23466777777777764333333211111222232 32 455555 5899999998765
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0032 Score=63.74 Aligned_cols=191 Identities=9% Similarity=0.022 Sum_probs=112.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.+-.+.- +..+..+..+.+++.+++.+..+
T Consensus 169 D~~v~lwd~~~~~~~~~l~~-------------H~~~V~~v~fspdg~~las~s~D------------------------ 211 (611)
T 1nr0_A 169 DNTVAIFEGPPFKFKSTFGE-------------HTKFVHSVRYNPDGSLFASTGGD------------------------ 211 (611)
T ss_dssp TSCEEEEETTTBEEEEEECC-------------CSSCEEEEEECTTSSEEEEEETT------------------------
T ss_pred CCeEEEEECCCCeEeeeecc-------------ccCceEEEEECCCCCEEEEEECC------------------------
Confidence 88899999888877654331 11111235566666666655543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+|+.+-.+....... .+......-..+.++ +..|+.+..
T Consensus 212 ---------~~i~lwd~~~g~~~~~~~~~~~~~--------------------~~h~~~V~~v~~spd---g~~l~s~s~ 259 (611)
T 1nr0_A 212 ---------GTIVLYNGVDGTKTGVFEDDSLKN--------------------VAHSGSVFGLTWSPD---GTKIASASA 259 (611)
T ss_dssp ---------SCEEEEETTTCCEEEECBCTTSSS--------------------CSSSSCEEEEEECTT---SSEEEEEET
T ss_pred ---------CcEEEEECCCCcEeeeeccccccc--------------------cccCCCEEEEEECCC---CCEEEEEeC
Confidence 889999999999876553210000 000011111222333 367888889
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
|+.+..+|..+|+.+-.+...... .........++..++.. ..++.+..+|+++++..-..
T Consensus 260 D~~v~lWd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~-----------------s~d~~i~~~~~~~~~~~~~~ 320 (611)
T 1nr0_A 260 DKTIKIWNVATLKVEKTIPVGTRI--EDQQLGIIWTKQALVSI-----------------SANGFINFVNPELGSIDQVR 320 (611)
T ss_dssp TSEEEEEETTTTEEEEEEECCSSG--GGCEEEEEECSSCEEEE-----------------ETTCCEEEEETTTTEEEEEE
T ss_pred CCeEEEEeCCCCceeeeecCCCCc--cceeEEEEEcCCEEEEE-----------------eCCCcEEEEeCCCCCcceEE
Confidence 999999999999988777643210 00112222244555544 34578999999998765443
Q ss_pred cCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEE
Q 040693 294 ADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWS 336 (382)
Q Consensus 294 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~ 336 (382)
..... ....+.+ ++.+++.++ .++.|...|..+|+..-.
T Consensus 321 ~gh~~--~v~~l~~spdg~~l~s~s--~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 321 YGHNK--AITALSSSADGKTLFSAD--AEGHINSWDISTGISNRV 361 (611)
T ss_dssp CCCSS--CEEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEC
T ss_pred cCCCC--CEEEEEEeCCCCEEEEEe--CCCcEEEEECCCCceeee
Confidence 32221 1122222 345677666 499999999999887543
|
| >3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate complex, periplasm, transesterification, phenol, bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=0.009 Score=59.60 Aligned_cols=60 Identities=15% Similarity=0.246 Sum_probs=36.4
Q ss_pred cEEEEeCCCC--cEeEEEec--CC----ceecceEE-eCC-EEEEEeCc------ee--EeecCCccCCCCCeEEEEE
Q 040693 322 PIYAMDVKTG--KILWSYDT--GA----TIYGGASV-SNG-CIYMGNGY------KV--TVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 322 ~l~~ld~~tG--~ilw~~~~--~~----~~~~~p~~-~~g-~lyv~~~~------g~--~~~~~~~~~~~g~~l~~~~ 381 (382)
..+.||.++. +++|++.. +. .+.++... .+| .|++-++. |. ...+.+++..+.+++|-+.
T Consensus 471 l~y~ID~~~~Tv~~vw~y~~~~g~~~yS~~~gs~Q~L~nGN~li~~g~~~~~~~~g~~~~~~i~E~~~~~~evv~e~~ 548 (571)
T 3elq_A 471 VEYKIDEKKGTVQQVWEYGKERGYDFYSPITSIIEYQADRNTMFGFGGSIHLFDVGQPTVGKLNEIDYKTKEVKVEID 548 (571)
T ss_dssp EEEEEETTTTEEEEEEEECGGGGGGGCCSSCCEEEEETTTTEEEEEEEEETTTSTTSEEEEEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCCEEEEEEEecCCCCCCcccccccccEECCCCCEEEEecccccccccCCCCceeEEEECCCCCEEEEEEE
Confidence 3566998866 89999953 22 23334433 344 44443331 11 4667889998888888764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00078 Score=61.63 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=82.9
Q ss_pred EEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCC
Q 040693 208 VVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASN 286 (382)
Q Consensus 208 v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~t 286 (382)
++++. +..|+.+|.++|+...-...... ..........+ .++.+|++....... +.......+.|+.+|+.
T Consensus 67 l~v~~-~~~l~~~d~~~g~~~~~~~~~~~-~~~~~~~di~~d~dG~l~~~~~~~~~~-----~~~~~~~~~~l~~~d~~- 138 (297)
T 3g4e_A 67 YVATI-GTKFCALNWKEQSAVVLATVDND-KKNNRFNDGKVDPAGRYFAGTMAEETA-----PAVLERHQGALYSLFPD- 138 (297)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEEECCTT-CSSEEEEEEEECTTSCEEEEEEECCSB-----TTBCCTTCEEEEEECTT-
T ss_pred EEEEE-CCeEEEEECCCCcEEEEEecCCC-CCCCCCCCEEECCCCCEEEecCCcccc-----cccccCCCcEEEEEECC-
Confidence 55555 45699999999986544433211 01111112223 356688865332110 00011234678999875
Q ss_pred CcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeC--CCCcEeEEE---ecCC--ceecceEE-eCCEEEE
Q 040693 287 GNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDV--KTGKILWSY---DTGA--TIYGGASV-SNGCIYM 356 (382)
Q Consensus 287 G~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~--~tG~ilw~~---~~~~--~~~~~p~~-~~g~lyv 356 (382)
|+..-...... ....+.+ ++..+|+... ..+.|+.+|. ++|++.-+. .... ..-...++ .+|+||+
T Consensus 139 g~~~~~~~~~~---~pngi~~spdg~~lyv~~~-~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwv 214 (297)
T 3g4e_A 139 HHVKKYFDQVD---ISNGLDWSLDHKIFYYIDS-LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWV 214 (297)
T ss_dssp SCEEEEEEEES---BEEEEEECTTSCEEEEEEG-GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEE
T ss_pred CCEEEEeeccc---cccceEEcCCCCEEEEecC-CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEE
Confidence 54432221111 1112333 3456777653 4678999875 678753221 1111 12223344 4789999
Q ss_pred EeCceeEeecCCccCCCCCeEEEEE
Q 040693 357 GNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 357 ~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
++..+.. ++.+|+.+|+.+-.+.
T Consensus 215 a~~~~~~--v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 215 ACYNGGR--VIRLDPVTGKRLQTVK 237 (297)
T ss_dssp EEETTTE--EEEECTTTCCEEEEEE
T ss_pred EEcCCCE--EEEEcCCCceEEEEEE
Confidence 9765432 4667888899886654
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00081 Score=64.06 Aligned_cols=249 Identities=8% Similarity=-0.070 Sum_probs=138.0
Q ss_pred EEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcC
Q 040693 29 YYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATG 108 (382)
Q Consensus 29 v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~ 108 (382)
....++||......... + .|..||.+|++++=+..++... .+.+++++..+|++..
T Consensus 29 ~~~~~~yV~~~~~~~~~--------d-~vsvID~~t~~v~~~i~vG~~P---------------~i~~spDg~~lyVan~ 84 (368)
T 1mda_H 29 AISRRSHITLPAYFAGT--------T-ENWVSCAGCGVTLGHSLGAFLS---------------LAVAGHSGSDFALAST 84 (368)
T ss_dssp CCTTEEEEEECTTTCSS--------E-EEEEEETTTTEEEEEEEECTTC---------------EEEECTTSSCEEEEEE
T ss_pred CCCCeEEEECCccCCcc--------c-eEEEEECCCCeEEEEEeCCCCC---------------ceEECCCCCEEEEEcc
Confidence 34478899775311100 2 7999999999999998875321 2678888899999862
Q ss_pred CCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCC
Q 040693 109 NLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDAD 188 (382)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (382)
.. . |..-+..++.|..||+.|++++-+...+....+.
T Consensus 85 ~~--------------~---------r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~-------------------- 121 (368)
T 1mda_H 85 SF--------------A---------RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS-------------------- 121 (368)
T ss_dssp EE--------------T---------TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC--------------------
T ss_pred cc--------------c---------ccccCCCCCEEEEEECCCCCEEEEEECCCccccc--------------------
Confidence 10 0 0000111378999999999999999876211000
Q ss_pred CCCCceEEEeeeCceeecEEEEEcc--CcEEEE--EeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccc
Q 040693 189 FGEAPMMLSMYRNKVKHDIVVAVQK--SGFAWA--LDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKN 264 (382)
Q Consensus 189 ~~~~p~~~~~~~~g~~~~~v~~~~~--~g~l~a--ld~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~ 264 (382)
....|.-..++++| ..+|+... ...+.. +|.++ +-+.+.+ +. +....++...|+..
T Consensus 122 ~g~~P~~ia~SpDG---k~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-----~~--~~~~p~g~~~~~~~------- 181 (368)
T 1mda_H 122 VGPRVHIIGNCASS---ACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-----SC--FHIHPGAAATHYLG------- 181 (368)
T ss_dssp BSCCTTSEEECTTS---SCEEEEECSSSCEEEEEETTTEE---EEEEECS-----SC--CCCEEEETTEEECC-------
T ss_pred cCCCcceEEEcCCC---CEEEEEccCCCCeEEEEEEchhh---ceEEECC-----Cc--eEEccCCCeEEEEE-------
Confidence 00122223333344 34555543 345777 78887 4444432 11 11122455566642
Q ss_pred cccCCCCCCCCCceEEEEECCC-----CcEEeeecCCCCCCCCcc-eEEeCCEEEEeeecCCCcEEEEeCCCCc--Ee--
Q 040693 265 FNLKPSKNSTIAGGWVAMDASN-----GNVLWSTADPSNGTAPGP-VTVANGVLFGGSTYRQGPIYAMDVKTGK--IL-- 334 (382)
Q Consensus 265 ~~~~~~~~~~~~g~v~a~d~~t-----G~~~W~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~g~l~~ld~~tG~--il-- 334 (382)
..++++..+|..+ |+..|+.. ........| ...+++.+|..+ . +.++.+|..+++ ++
T Consensus 182 ---------~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~vg~~P~~~~~~~~~~~vs--~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 182 ---------SCPASLAASDLAAAPAAAGIVGAQCT-GAQNCSSQAAQANYPGMLVWAV--A-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp ---------CCTTSCEEEECCSSCCCCEECCCCSC-TTSCBCSCCEEETTTTEEEECB--S-SCCEEEECCSSCCEEECC
T ss_pred ---------cCCCCEEEEECccccccCCeEEEEee-eeeeCCCCccccccCCEEEEEc--C-CEEEEEECCCCcceEEEE
Confidence 3357788899997 88777432 110011112 123356777766 3 899999987543 22
Q ss_pred EEEecC----Ccee---cc-eEE--eCCEEEEEeC-c-e------eEeecCCccCCCCCeEEE
Q 040693 335 WSYDTG----ATIY---GG-ASV--SNGCIYMGNG-Y-K------VTVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 335 w~~~~~----~~~~---~~-p~~--~~g~lyv~~~-~-g------~~~~~~~~~~~~g~~l~~ 379 (382)
|.+... .... .. ..+ .++++||+.. . + .... .+|..+++.+-.
T Consensus 249 ~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~--ViD~~t~~vv~~ 309 (368)
T 1mda_H 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS--SVTASVGQTSGP 309 (368)
T ss_dssp CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE--EEESSSCCEEEC
T ss_pred EEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE--EEECCCCeEEEE
Confidence 322111 0111 11 122 4689999754 2 2 2122 688888887643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.0041 Score=57.57 Aligned_cols=93 Identities=14% Similarity=0.108 Sum_probs=45.7
Q ss_pred CceEEEEECC-CCcEEeee--cCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCC--CCcEeE--EEec-CCc---
Q 040693 276 AGGWVAMDAS-NGNVLWST--ADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVK--TGKILW--SYDT-GAT--- 342 (382)
Q Consensus 276 ~g~v~a~d~~-tG~~~W~~--~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~--tG~ilw--~~~~-~~~--- 342 (382)
.+.|..+|+. +|+..-.. ..... .....+.+. +.++|++.. .++.+..++.+ +|+..- .... +..
T Consensus 161 ~~~v~~~~~~~~g~~~~~~~~~~~~g-~~p~~~~~spdg~~l~v~~~-~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 238 (347)
T 3hfq_A 161 SDKVYVYNVSDAGQLSEQSVLTMEAG-FGPRHLVFSPDGQYAFLAGE-LSSQIASLKYDTQTGAFTQLGIVKTIPADYTA 238 (347)
T ss_dssp TTEEEEEEECTTSCEEEEEEEECCTT-CCEEEEEECTTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESSCTTCCS
T ss_pred CCEEEEEEECCCCcEEEeeeEEcCCC-CCCceEEECCCCCEEEEEeC-CCCEEEEEEecCCCCceEEeeeeeecCCCCCC
Confidence 4678889988 67654332 22211 011112332 346777653 45666666554 576532 2221 111
Q ss_pred --eecceEE-eCC-EEEEEeCceeEeecCCcc
Q 040693 343 --IYGGASV-SNG-CIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 343 --~~~~p~~-~~g-~lyv~~~~g~~~~~~~~~ 370 (382)
....+.+ .+| .||+++.....+.+|.++
T Consensus 239 ~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 239 HNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred CCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 1122333 344 588876644445666665
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.013 Score=52.30 Aligned_cols=111 Identities=12% Similarity=-0.050 Sum_probs=65.8
Q ss_pred cEEEEEcc---CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 206 DIVVAVQK---SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 206 ~~v~~~~~---~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
+.||+... .+.++.++.+ |+..-...... .....+.++ +++.||++.. ..+.|.
T Consensus 134 g~lyv~~~~~~~~~I~~~~~d-g~~~~~~~~~~----~~~P~gia~d~~~~~lyv~d~----------------~~~~I~ 192 (267)
T 1npe_A 134 GNLYWTDWNRDNPKIETSHMD-GTNRRILAQDN----LGLPNGLTFDAFSSQLCWVDA----------------GTHRAE 192 (267)
T ss_dssp TEEEEEECCSSSCEEEEEETT-SCCCEEEECTT----CSCEEEEEEETTTTEEEEEET----------------TTTEEE
T ss_pred CEEEEEECCCCCcEEEEEecC-CCCcEEEEECC----CCCCcEEEEcCCCCEEEEEEC----------------CCCEEE
Confidence 45555543 3578777765 43322111110 012223334 4678998743 347899
Q ss_pred EEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
.+|+.+++..-..+... ....+.++++.+|++.. ..+.|+.+|+++|+++-+++.+.
T Consensus 193 ~~~~~g~~~~~~~~~~~---~P~gi~~d~~~lyva~~-~~~~v~~~d~~~g~~~~~i~~g~ 249 (267)
T 1npe_A 193 CLNPAQPGRRKVLEGLQ---YPFAVTSYGKNLYYTDW-KTNSVIAMDLAISKEMDTFHPHK 249 (267)
T ss_dssp EEETTEEEEEEEEECCC---SEEEEEEETTEEEEEET-TTTEEEEEETTTTEEEEEECCSS
T ss_pred EEecCCCceEEEecCCC---CceEEEEeCCEEEEEEC-CCCeEEEEeCCCCCceEEEcccc
Confidence 99998655433333211 11234567889999874 46899999999999988877653
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.002 Score=67.39 Aligned_cols=146 Identities=12% Similarity=0.079 Sum_probs=82.1
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
++.|++++.. -|+.+|..+++...................... .++.+++++ ..+.|+.+|
T Consensus 460 ~g~lwigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-----------------~~~Gl~~~~ 521 (781)
T 3v9f_A 460 NKKIWIGTHA-GVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGT-----------------FGGGVGIYT 521 (781)
T ss_dssp TSEEEEEETT-EEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEE-----------------SSSCEEEEC
T ss_pred CCCEEEEECC-ceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEE-----------------cCCCEEEEe
Confidence 5678888875 499999998876544332211111112222222 467788873 335599999
Q ss_pred CCCCcEEeeecCCC-CCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC----ceecceEE-eCCEEEE
Q 040693 284 ASNGNVLWSTADPS-NGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA----TIYGGASV-SNGCIYM 356 (382)
Q Consensus 284 ~~tG~~~W~~~~~~-~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~----~~~~~p~~-~~g~lyv 356 (382)
+++++...-..... .......+..+ ++.+|+++. .|-++.+|+++++.. .+.... ....+.+. .+|+|++
T Consensus 522 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~--~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~ 598 (781)
T 3v9f_A 522 PDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG--EGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWA 598 (781)
T ss_dssp TTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET--TEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEE
T ss_pred CCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC--CCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEE
Confidence 98886544322111 00111223333 578999983 444499999888743 333221 12233333 4799999
Q ss_pred EeCceeEeecCCccCCCCC
Q 040693 357 GNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 357 ~~~~g~~~~~~~~~~~~g~ 375 (382)
++..|- +.+++.+++
T Consensus 599 ~t~~Gl----~~~~~~~~~ 613 (781)
T 3v9f_A 599 STNTGI----SCYITSKKC 613 (781)
T ss_dssp ECSSCE----EEEETTTTE
T ss_pred EcCCce----EEEECCCCc
Confidence 987753 456665543
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0021 Score=67.35 Aligned_cols=155 Identities=11% Similarity=0.077 Sum_probs=85.9
Q ss_pred eEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccC-C-C-CCCCCcccceeee-CCe-EEEEecCccccccccC
Q 040693 194 MMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAG-P-G-GLGGGAMWGAATD-ERR-IYTNIANSQHKNFNLK 268 (382)
Q Consensus 194 ~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~-~-~-~~~g~~~~~~~~~-~~~-v~~~~~~~~~~~~~~~ 268 (382)
.+..+..+. ++.|++++.++-|..+|..+++...-.... . . ............+ ++. +++++
T Consensus 358 ~V~~i~~d~--~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt----------- 424 (795)
T 4a2l_A 358 VVSCIVEDK--DKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGT----------- 424 (795)
T ss_dssp SEEEEEECT--TSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEE-----------
T ss_pred eeEEEEECC--CCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEe-----------
Confidence 344444443 567899988867999999988765443211 0 0 1112233333333 566 88873
Q ss_pred CCCCCCCCceEEEEECCCCcEEeeecCCCC--CCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEec------
Q 040693 269 PSKNSTIAGGWVAMDASNGNVLWSTADPSN--GTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDT------ 339 (382)
Q Consensus 269 ~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~------ 339 (382)
..+.|..+|+++|+...-...... ......+..+ ++.+|+++ .+.|+.+|+++++...-...
T Consensus 425 ------~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt---~~Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 425 ------HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT---LSALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp ------TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE---SSCEEEEETTTTEEEECCBCTTCCBC
T ss_pred ------CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe---cCceeEEeCCCCeEEEcccccccccc
Confidence 346799999999875432221110 0111223333 57899998 46799999998765432211
Q ss_pred CCceecceEE-eCCEEEEEeCceeEeecCCccCCCC
Q 040693 340 GATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSG 374 (382)
Q Consensus 340 ~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g 374 (382)
......+... .+|+|++++..| ++.++..++
T Consensus 496 ~~~~i~~i~~d~~g~lWigt~~G----l~~~~~~~~ 527 (795)
T 4a2l_A 496 VSKQITTLFRDSHKRLWIGGEEG----LSVFKQEGL 527 (795)
T ss_dssp CCCCEEEEEECTTCCEEEEESSC----EEEEEEETT
T ss_pred CCceEEEEEECCCCCEEEEeCCc----eEEEeCCCC
Confidence 0111122222 478999998743 344554443
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0061 Score=62.56 Aligned_cols=188 Identities=14% Similarity=0.090 Sum_probs=111.3
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+|+.+-++.-... .+ .+..+.+++..++.+..+
T Consensus 451 Dg~v~vwd~~~~~~~~~~~~h~~-----------~v--~~~~~s~~~~~l~s~s~D------------------------ 493 (694)
T 3dm0_A 451 DGELRLWDLAAGVSTRRFVGHTK-----------DV--LSVAFSLDNRQIVSASRD------------------------ 493 (694)
T ss_dssp TSEEEEEETTTTEEEEEEECCSS-----------CE--EEEEECTTSSCEEEEETT------------------------
T ss_pred CCcEEEEECCCCcceeEEeCCCC-----------CE--EEEEEeCCCCEEEEEeCC------------------------
Confidence 89999999999988766542110 11 134556666666665543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|.. ++........... ......-.....++ ....+++++.
T Consensus 494 ---------~~i~iwd~~-~~~~~~~~~~~~~-----------------------h~~~v~~~~~~~~~-~~~~l~s~s~ 539 (694)
T 3dm0_A 494 ---------RTIKLWNTL-GECKYTISEGGEG-----------------------HRDWVSCVRFSPNT-LQPTIVSASW 539 (694)
T ss_dssp ---------SCEEEECTT-SCEEEEECSSTTS-----------------------CSSCEEEEEECSCS-SSCEEEEEET
T ss_pred ---------CEEEEEECC-CCcceeeccCCCC-----------------------CCCcEEEEEEeCCC-CcceEEEEeC
Confidence 788888864 5555444322110 00000111112222 1356888889
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
|+.+..+|..+++..-.+..-. ........ ++..+..+ ..++.|..+|.++|+.+.
T Consensus 540 d~~v~vwd~~~~~~~~~~~~h~-----~~v~~v~~spdg~~l~sg-----------------~~Dg~i~iwd~~~~~~~~ 597 (694)
T 3dm0_A 540 DKTVKVWNLSNCKLRSTLAGHT-----GYVSTVAVSPDGSLCASG-----------------GKDGVVLLWDLAEGKKLY 597 (694)
T ss_dssp TSCEEEEETTTCCEEEEECCCS-----SCEEEEEECTTSSEEEEE-----------------ETTSBCEEEETTTTEEEE
T ss_pred CCeEEEEECCCCcEEEEEcCCC-----CCEEEEEEeCCCCEEEEE-----------------eCCCeEEEEECCCCceEE
Confidence 9999999999998876654211 12222222 44445444 345889999999999988
Q ss_pred eecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 292 STADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
+...... ...+.+ .++.++++.. ++.|...|..+++++-++..
T Consensus 598 ~~~~~~~---v~~~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~ 641 (694)
T 3dm0_A 598 SLEANSV---IHALCFSPNRYWLCAAT--EHGIKIWDLESKSIVEDLKV 641 (694)
T ss_dssp CCBCSSC---EEEEEECSSSSEEEEEE--TTEEEEEETTTTEEEEEECC
T ss_pred EecCCCc---EEEEEEcCCCcEEEEEc--CCCEEEEECCCCCChhhhcc
Confidence 7664321 122223 2444444443 77799999999998876653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.012 Score=52.08 Aligned_cols=107 Identities=17% Similarity=0.036 Sum_probs=51.8
Q ss_pred cEEEEEccCc--EEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 206 DIVVAVQKSG--FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 206 ~~v~~~~~~g--~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
.+++....++ .++.+|..+++..-..... .....+.. ++..+++.... .....|+.
T Consensus 142 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~s~dg~~l~~~~~~--------------~~~~~i~~ 201 (297)
T 2ojh_A 142 SFTYCGIRDQVFDIYSMDIDSGVETRLTHGE------GRNDGPDYSPDGRWIYFNSSR--------------TGQMQIWR 201 (297)
T ss_dssp EEEEEEEETTEEEEEEEETTTCCEEECCCSS------SCEEEEEECTTSSEEEEEECT--------------TSSCEEEE
T ss_pred EEEEEECCCCceEEEEEECCCCcceEcccCC------CccccceECCCCCEEEEEecC--------------CCCccEEE
Confidence 3444555555 5777777777654322211 11122222 45556554321 12355777
Q ss_pred EECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecC---------CCcEEEEeCCCCcEeE
Q 040693 282 MDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYR---------QGPIYAMDVKTGKILW 335 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~---------~g~l~~ld~~tG~ilw 335 (382)
++..+++..-...... ....+.+ ++..+++.+... ...|+.+|.+++++.-
T Consensus 202 ~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~ 263 (297)
T 2ojh_A 202 VRVDGSSVERITDSAY---GDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET 263 (297)
T ss_dssp EETTSSCEEECCCCSE---EEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE
T ss_pred ECCCCCCcEEEecCCc---ccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee
Confidence 7776665432211111 1112223 234555555311 1569999999887633
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0024 Score=59.29 Aligned_cols=143 Identities=10% Similarity=0.013 Sum_probs=75.6
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee---------------eCCeEEEEecCccccccccCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT---------------DERRIYTNIANSQHKNFNLKP 269 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~---------------~~~~v~~~~~~~~~~~~~~~~ 269 (382)
+..++++..++.+..+|..+++..-....... ......... ++..++++
T Consensus 115 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------- 178 (379)
T 3jrp_A 115 GPLLLVASSDGKVSVVEFKENGTTSPIIIDAH---AIGVNSASWAPATIEEDGEHNGTKESRKFVTG------------- 178 (379)
T ss_dssp CSEEEEEETTSEEEEEECCTTSCCCEEEEECC---TTCEEEEEECCCC----------CTTCEEEEE-------------
T ss_pred CCEEEEecCCCcEEEEecCCCCceeeEEecCC---CCceEEEEEcCccccccccccCCCCCCEEEEE-------------
Confidence 36788888999999999998743322221110 001111111 24445554
Q ss_pred CCCCCCCceEEEEECCCCcEEeeec--CCCCCCCCcceEEe-C---C-EEEEeeecCCCcEEEEeCCCCcEeEEEecCC-
Q 040693 270 SKNSTIAGGWVAMDASNGNVLWSTA--DPSNGTAPGPVTVA-N---G-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGA- 341 (382)
Q Consensus 270 ~~~~~~~g~v~a~d~~tG~~~W~~~--~~~~~~~~~~~~~~-~---~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~- 341 (382)
..++.|..+|.++++..+... ..........+.+. + + +++.++ .++.|..+|..+++..+......
T Consensus 179 ----~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~ 252 (379)
T 3jrp_A 179 ----GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKTLLKE 252 (379)
T ss_dssp ----ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEEESSS
T ss_pred ----eCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEe--CCCEEEEEeCCCCCccceeeeecc
Confidence 345789999999887665532 11101111222232 2 3 455555 58999999999886544433221
Q ss_pred ----ceecceEE-eCC-EEEEEeCceeEeecCCcc
Q 040693 342 ----TIYGGASV-SNG-CIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 342 ----~~~~~p~~-~~g-~lyv~~~~g~~~~~~~~~ 370 (382)
........ .++ .|++++.+|. +.+|.++
T Consensus 253 ~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~ 286 (379)
T 3jrp_A 253 EKFPDVLWRASWSLSGNVLALSGGDNK-VTLWKEN 286 (379)
T ss_dssp SCCSSCEEEEEECSSSCCEEEEESSSS-EEEEEEE
T ss_pred ccCCCcEEEEEEcCCCCEEEEecCCCc-EEEEeCC
Confidence 12222223 244 4555555544 5666665
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0026 Score=59.62 Aligned_cols=169 Identities=9% Similarity=-0.042 Sum_probs=92.4
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
+.|..+|..+|+.+-++..... + ..+... .+.+++. .++.+..+|.
T Consensus 81 ~~v~iWd~~~~~~~~~~~~~~~-----------------------------v-~~v~~~---~~~~~~~-~~~~i~i~d~ 126 (355)
T 3vu4_A 81 EVVHIWDDVKKQDVSRIKVDAP-----------------------------V-KDLFLS---REFIVVS-YGDVISVFKF 126 (355)
T ss_dssp TEEEEEETTTTEEEEEEECSSC-----------------------------E-EEEEEC---SSEEEEE-ETTEEEEEES
T ss_pred cEEEEEECCCCcEEEEEECCCc-----------------------------e-EEEEEc---CCEEEEE-EcCEEEEEEC
Confidence 6899999999999887764321 1 111111 2233333 3677999999
Q ss_pred CCC-CeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE------------
Q 040693 223 DSG-SLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV------------ 289 (382)
Q Consensus 223 ~tG-~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~------------ 289 (382)
.++ +.+..+.. + . ......-..+.+... ..++.|..+|.++++.
T Consensus 127 ~~~~~~~~~~~~-~------~-~~~~~s~~~la~~sg---------------~~~g~v~iwd~~~~~~~~~~~~~~~~~~ 183 (355)
T 3vu4_A 127 GNPWKRITDDIR-F------G-GVCEFSNGLLVYSNE---------------FNLGQIHITKLQSSGSATTQDQGVQQKA 183 (355)
T ss_dssp STTCCBSSCCEE-E------E-EEEEEETTEEEEEES---------------SCTTCEEEEECCC---------------
T ss_pred CCCceeeEEecc-C------C-ceEEEEccEEEEeCC---------------CcCcEEEEEECCCCCccccccccccccc
Confidence 988 76666553 1 0 000111133333211 3458899999998762
Q ss_pred ----EeeecCCCCCCCCcceEE--eCCEEEEeeecCCCc-EEEEeCCCCcEeEEEecC--CceecceEE-eCCEEEEEeC
Q 040693 290 ----LWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGP-IYAMDVKTGKILWSYDTG--ATIYGGASV-SNGCIYMGNG 359 (382)
Q Consensus 290 ----~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~-l~~ld~~tG~ilw~~~~~--~~~~~~p~~-~~g~lyv~~~ 359 (382)
+-....... ....+.+ ++.++..++ .++. |...|..+|+.+.++..+ .....+... .+++++++.+
T Consensus 184 ~~p~~~~~~~h~~--~v~~~~~s~~g~~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s 259 (355)
T 3vu4_A 184 ILGKGVLIKAHTN--PIKMVRLNRKSDMVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259 (355)
T ss_dssp ---CCEEECCCSS--CEEEEEECTTSSEEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEE
T ss_pred cCcccEEEEccCC--ceEEEEECCCCCEEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEE
Confidence 222222211 1122223 234566555 4897 999999999999988732 222223333 3555555555
Q ss_pred ceeEeecCCccCC
Q 040693 360 YKVTVGFGNKNFT 372 (382)
Q Consensus 360 ~g~~~~~~~~~~~ 372 (382)
....+.+|.+...
T Consensus 260 ~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 260 DKWTLHVFEIFND 272 (355)
T ss_dssp TTCEEEEEESSCC
T ss_pred CCCEEEEEEccCC
Confidence 4455777776543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0076 Score=57.92 Aligned_cols=195 Identities=12% Similarity=0.105 Sum_probs=101.8
Q ss_pred ceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCC
Q 040693 55 GSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDK 134 (382)
Q Consensus 55 g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (382)
..|+.+|.++|+.+-..... + . ...+.+.+++..+++.....
T Consensus 203 ~~i~~~d~~tg~~~~l~~~~-----------~-~--~~~~~~spdg~~la~~~~~~------------------------ 244 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVASFP-----------R-H--NGAPAFSPDGSKLAFALSKT------------------------ 244 (415)
T ss_dssp CEEEEEETTTCCEEEEECCS-----------S-C--EEEEEECTTSSEEEEEECTT------------------------
T ss_pred cEEEEEECCCCcEEEeecCC-----------C-c--ccCEEEcCCCCEEEEEEecC------------------------
Confidence 48999999999876322210 0 0 12467888877777543210
Q ss_pred CCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccC
Q 040693 135 CIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKS 214 (382)
Q Consensus 135 ~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~ 214 (382)
....|+.+|..+|+.. ++.... ....-....++| ..+++....+
T Consensus 245 ------g~~~i~~~d~~~~~~~---~l~~~~-------------------------~~~~~~~~spdg--~~l~~~s~~~ 288 (415)
T 2hqs_A 245 ------GSLNLYVMDLASGQIR---QVTDGR-------------------------SNNTEPTWFPDS--QNLAFTSDQA 288 (415)
T ss_dssp ------SSCEEEEEETTTCCEE---ECCCCS-------------------------SCEEEEEECTTS--SEEEEEECTT
T ss_pred ------CCceEEEEECCCCCEE---eCcCCC-------------------------CcccceEECCCC--CEEEEEECCC
Confidence 1257999999988763 222111 011111223333 2233334333
Q ss_pred c--EEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE
Q 040693 215 G--FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL 290 (382)
Q Consensus 215 g--~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~ 290 (382)
+ .++.+|..+|+..--.. . +.....+.+ ++..|++.... .....|+.+|+.+|+..
T Consensus 289 g~~~i~~~d~~~~~~~~l~~-~-----~~~~~~~~~spdG~~l~~~~~~--------------~g~~~i~~~d~~~~~~~ 348 (415)
T 2hqs_A 289 GRPQVYKVNINGGAPQRITW-E-----GSQNQDADVSSDGKFMVMVSSN--------------GGQQHIAKQDLATGGVQ 348 (415)
T ss_dssp SSCEEEEEETTSSCCEECCC-S-----SSEEEEEEECTTSSEEEEEEEC--------------SSCEEEEEEETTTCCEE
T ss_pred CCcEEEEEECCCCCEEEEec-C-----CCcccCeEECCCCCEEEEEECc--------------CCceEEEEEECCCCCEE
Confidence 4 79999999887532111 1 112222332 56666655322 12357999999999875
Q ss_pred eeecCCCCCCCCcceEEe--CCEEEEeeecCCC--cEEEEeCCCCcEeEEEecCCceecceEE
Q 040693 291 WSTADPSNGTAPGPVTVA--NGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGATIYGGASV 349 (382)
Q Consensus 291 W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~~~~~p~~ 349 (382)
-.... . ....+... +..++.++. +++ .|+.+|.+ |+.+.++....+...+|+.
T Consensus 349 ~l~~~-~---~~~~~~~spdg~~l~~~s~-~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~ 405 (415)
T 2hqs_A 349 VLSST-F---LDETPSLAPNGTMVIYSSS-QGMGSVLNLVSTD-GRFKARLPATDGQVKFPAW 405 (415)
T ss_dssp ECCCS-S---SCEEEEECTTSSEEEEEEE-ETTEEEEEEEETT-SCCEEECCCSSSEEEEEEE
T ss_pred EecCC-C---CcCCeEEcCCCCEEEEEEc-CCCccEEEEEECC-CCcEEEeeCCCCCCcCCcc
Confidence 32221 1 12223332 345555543 233 79999987 5555555544333444443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.025 Score=51.30 Aligned_cols=140 Identities=17% Similarity=0.206 Sum_probs=78.4
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-.+.+ ........++.++.||+....... .....+..+|+++. .|+.-
T Consensus 128 ~~~~~~d~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~~d~~~~--~W~~~ 190 (301)
T 2vpj_A 128 TSMERYDPNID--QWSMLGDMQ--TAREGAGLVVASGVIYCLGGYDGL-----------NILNSVEKYDPHTG--HWTNV 190 (301)
T ss_dssp CEEEEEETTTT--EEEEEEECS--SCCBSCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTT--EEEEE
T ss_pred ceEEEEcCCCC--eEEECCCCC--CCcccceEEEECCEEEEECCCCCC-----------cccceEEEEeCCCC--cEEeC
Confidence 46899998865 476543221 112223334467788876432110 12466999999887 57653
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeecC----CCcEEEEeCCCCcEeEEEe--cCCc-eecceEEeCCEEEEEeCcee---
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTYR----QGPIYAMDVKTGKILWSYD--TGAT-IYGGASVSNGCIYMGNGYKV--- 362 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~~----~g~l~~ld~~tG~ilw~~~--~~~~-~~~~p~~~~g~lyv~~~~g~--- 362 (382)
.+... ........++.+|+..... ...++++|+++.+ |+.- ++.. ...+.++.+++||+..+...
T Consensus 191 ~~~p~~r-~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 267 (301)
T 2vpj_A 191 TPMATKR-SGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSL 267 (301)
T ss_dssp CCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEETTEEEEECCBCSSSB
T ss_pred CCCCccc-ccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCc--EEECCCCCCcccceeEEEECCEEEEEcCcCCCcc
Confidence 33322 2334445577777754211 2469999998764 6543 2222 33445668999999876432
Q ss_pred EeecCCccCCCC
Q 040693 363 TVGFGNKNFTSG 374 (382)
Q Consensus 363 ~~~~~~~~~~~g 374 (382)
...++.+|..+.
T Consensus 268 ~~~v~~yd~~~~ 279 (301)
T 2vpj_A 268 LSSIECYDPIID 279 (301)
T ss_dssp EEEEEEEETTTT
T ss_pred cccEEEEcCCCC
Confidence 123444555443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.017 Score=55.03 Aligned_cols=146 Identities=11% Similarity=-0.034 Sum_probs=75.9
Q ss_pred cEEEE-EccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee--CCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVVA-VQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~~-~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+.||+ ....+.+..++.+.....-..... .....+.+++ ++.||++... ..+.|+.+
T Consensus 171 g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~-----l~~P~giavdp~~g~ly~td~~---------------~~~~I~r~ 230 (386)
T 3v65_B 171 DKLYWTDSGTSRIEVANLDGAHRKVLLWQS-----LEKPRAIALHPMEGTIYWTDWG---------------NTPRIEAS 230 (386)
T ss_dssp TEEEEEETTTTEEEECBTTSCSCEEEECSS-----CSCEEEEEEETTTTEEEEEECS---------------SSCEEEEE
T ss_pred CeEEEEcCCCCeEEEEeCCCCceEEeecCC-----CCCCcEEEEEcCCCeEEEeccC---------------CCCEEEEE
Confidence 34443 444567777776633211111110 0122333444 7889987432 12678888
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEE-ecCCceecceEEeCCEEEEEeC
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSY-DTGATIYGGASVSNGCIYMGNG 359 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~-~~~~~~~~~p~~~~g~lyv~~~ 359 (382)
+.......-...... .....++++ ++++|++.. ..+.|+.+|.+ |+..-.+ ..+...-...++.++.||++..
T Consensus 231 ~~dG~~~~~~~~~~~--~~PnGlavd~~~~~lY~aD~-~~~~I~~~d~d-G~~~~~~~~~~~~~P~giav~~~~ly~td~ 306 (386)
T 3v65_B 231 SMDGSGRRIIADTHL--FWPNGLTIDYAGRRMYWVDA-KHHVIERANLD-GSHRKAVISQGLPHPFAITVFEDSLYWTDW 306 (386)
T ss_dssp ETTSCSCEEEECSSC--SCEEEEEEEGGGTEEEEEET-TTTEEEEECTT-SCSCEEEECSSCSSEEEEEEETTEEEEEET
T ss_pred eCCCCCcEEEEECCC--CCeeeEEEeCCCCEEEEEEC-CCCEEEEEeCC-CCeeEEEEECCCCCceEEEEECCEEEEeeC
Confidence 875433222222111 122334554 689999875 56789999986 3332222 2111222345568999999986
Q ss_pred ceeEeecCCccCCCCCeE
Q 040693 360 YKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 360 ~g~~~~~~~~~~~~g~~l 377 (382)
.... +..++..+|+.+
T Consensus 307 ~~~~--V~~~~~~~G~~~ 322 (386)
T 3v65_B 307 HTKS--INSANKFTGKNQ 322 (386)
T ss_dssp TTTE--EEEEETTTCCSC
T ss_pred CCCe--EEEEECCCCcce
Confidence 5442 344555556543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0067 Score=60.18 Aligned_cols=129 Identities=14% Similarity=0.178 Sum_probs=74.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..|.++..|+.+..+|. +++.+....... ........ ++..+..+ ..++.|..+
T Consensus 438 ~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~-----~~v~~~~~spd~~~las~-----------------~~d~~i~iw 494 (577)
T 2ymu_A 438 DQTIASASDDKTVKLWNR-NGQLLQTLTGHS-----SSVRGVAFSPDGQTIASA-----------------SDDKTVKLW 494 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TSCEEEEEECCS-----SCEEEEEECTTSCEEEEE-----------------ETTSEEEEE
T ss_pred CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCC-----CCEEEEEEcCCCCEEEEE-----------------eCCCEEEEE
Confidence 357778888999999996 577766654321 12222222 44555444 335788889
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEE-e
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMG-N 358 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~-~ 358 (382)
| .+|+.+.+....... ...+.+ ++.+++.++ .++.|...|. +|+.+-.+........+..+ .+++.+++ +
T Consensus 495 ~-~~~~~~~~~~~h~~~--v~~l~~s~dg~~l~s~~--~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 495 N-RNGQLLQTLTGHSSS--VRGVAFSPDGQTIASAS--DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp E-TTSCEEEEEECCSSC--EEEEEECTTSSCEEEEE--TTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred c-CCCCEEEEEeCCCCC--EEEEEEcCCCCEEEEEE--CcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 9 578888777654321 122223 234565555 4899999995 68888776543332333333 35554444 4
Q ss_pred Ccee
Q 040693 359 GYKV 362 (382)
Q Consensus 359 ~~g~ 362 (382)
.++.
T Consensus 569 ~D~~ 572 (577)
T 2ymu_A 569 SDKT 572 (577)
T ss_dssp TTSC
T ss_pred CCCE
Confidence 4443
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.015 Score=58.84 Aligned_cols=146 Identities=11% Similarity=0.033 Sum_probs=82.8
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCC--CCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG--LGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~--~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
+..+..+..|+.+..+|..+|+.+-.+...... ........... ++..+..+ ..++.|.
T Consensus 202 g~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~-----------------s~D~~v~ 264 (611)
T 1nr0_A 202 GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA-----------------SADKTIK 264 (611)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE-----------------ETTSEEE
T ss_pred CCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEE-----------------eCCCeEE
Confidence 357888889999999999999887665321100 01112222222 44445444 3458899
Q ss_pred EEECCCCcEEeeecCCCCCC-CCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCC-EEEEE
Q 040693 281 AMDASNGNVLWSTADPSNGT-APGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNG-CIYMG 357 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g-~lyv~ 357 (382)
.+|+++|+.+-+........ ....+...+..++..+ .++.+..+|..+++++-...-......+..+ .++ .|+.+
T Consensus 265 lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s--~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~ 342 (611)
T 1nr0_A 265 IWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS--ANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSA 342 (611)
T ss_dssp EEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEE--TTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred EEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEe--CCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEE
Confidence 99999999887776542110 1112233455666666 4899999999988765443322222222222 244 44445
Q ss_pred eCceeEeecCCcc
Q 040693 358 NGYKVTVGFGNKN 370 (382)
Q Consensus 358 ~~~g~~~~~~~~~ 370 (382)
+.++. +.+|.+.
T Consensus 343 s~D~~-v~~Wd~~ 354 (611)
T 1nr0_A 343 DAEGH-INSWDIS 354 (611)
T ss_dssp ETTSC-EEEEETT
T ss_pred eCCCc-EEEEECC
Confidence 55543 4555543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.019 Score=53.70 Aligned_cols=148 Identities=14% Similarity=0.099 Sum_probs=74.8
Q ss_pred cEEEEE-ccCcEEEEEeCC-CCCeee--eeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 206 DIVVAV-QKSGFAWALDRD-SGSLIW--SMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 206 ~~v~~~-~~~g~l~ald~~-tG~~~W--~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
..+++. ..++.++.+|.+ +|+..- ..+.+. .+......++ ++..+|+... .++.+
T Consensus 157 ~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~---~g~~p~~~~~spdg~~l~v~~~----------------~~~~v 217 (365)
T 1jof_A 157 TYLYSADLTANKLWTHRKLASGEVELVGSVDAPD---PGDHPRWVAMHPTGNYLYALME----------------AGNRI 217 (365)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS---TTCCEEEEEECTTSSEEEEEET----------------TTTEE
T ss_pred CEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC---CCCCCCEeEECCCCCEEEEEEC----------------CCCeE
Confidence 345554 346789999988 887643 222111 0111122222 5667887632 23566
Q ss_pred EEE--ECCCCcEEe---eec-CCCCC---C-------CCcceE-E--eCCEEEEeeecCC----CcEEEEeCC-CCcEeE
Q 040693 280 VAM--DASNGNVLW---STA-DPSNG---T-------APGPVT-V--ANGVLFGGSTYRQ----GPIYAMDVK-TGKILW 335 (382)
Q Consensus 280 ~a~--d~~tG~~~W---~~~-~~~~~---~-------~~~~~~-~--~~~~v~~~~~~~~----g~l~~ld~~-tG~ilw 335 (382)
..+ |.++|+... +.. .+... . ....+. + ++..+|++....+ +.|..++.+ +|++..
T Consensus 218 ~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 218 CEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp EEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE
T ss_pred EEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE
Confidence 665 556887643 222 22110 0 111233 3 2457887663112 178888875 788654
Q ss_pred E---EecCCceecceE--E---eCCEEEEEeCceeEeecCCccCC
Q 040693 336 S---YDTGATIYGGAS--V---SNGCIYMGNGYKVTVGFGNKNFT 372 (382)
Q Consensus 336 ~---~~~~~~~~~~p~--~---~~g~lyv~~~~g~~~~~~~~~~~ 372 (382)
. .+.....-...+ . .+..||+++.+...+.+|.++..
T Consensus 298 ~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 298 QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2 222211111111 2 36778888776556777777654
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0075 Score=56.94 Aligned_cols=109 Identities=10% Similarity=0.067 Sum_probs=66.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCC--Ccccceee--eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGG--GAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g--~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
+..++.++.|+.+..+|..+|+.+..+......... ......+. ++..++.+ ..++.|.
T Consensus 261 ~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g-----------------~~dg~i~ 323 (380)
T 3iz6_a 261 GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAG-----------------YSNGDCY 323 (380)
T ss_dssp SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEE-----------------CTTSCEE
T ss_pred CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEE-----------------ECCCCEE
Confidence 467888999999999999999988766543211110 01112222 55666665 4458899
Q ss_pred EEECCCCcEEeeecCCC-C-CCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCc
Q 040693 281 AMDASNGNVLWSTADPS-N-GTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGK 332 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~-~-~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ 332 (382)
.+|..+++...+..... . ......+.+ ++..++.++ .++.|...+...++
T Consensus 324 vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs--~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 324 VWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGS--WDKNLKIWAFSGHR 377 (380)
T ss_dssp EEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEEC--TTSCEEEEECCSSS
T ss_pred EEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEee--CCCCEEEEecCCCc
Confidence 99999999887763211 0 001122223 344565555 48888888876543
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00021 Score=67.07 Aligned_cols=142 Identities=6% Similarity=-0.097 Sum_probs=70.9
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..++++..++.+..+|..+++..+....-.. ........... ++..++.+ ..++.|..+
T Consensus 112 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~iw 173 (377)
T 3dwl_C 112 EDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLLAAG-----------------CADRKAYVL 173 (377)
T ss_dssp SSCCEEEESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSEEEEE-----------------ESSSCEEEE
T ss_pred CCEEEEEecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCEEEEE-----------------eCCCEEEEE
Confidence 35677888899999999998874222211000 00112222222 34455554 334778888
Q ss_pred ECCC------------------CcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcE----eEEEe
Q 040693 283 DASN------------------GNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKI----LWSYD 338 (382)
Q Consensus 283 d~~t------------------G~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~i----lw~~~ 338 (382)
|..+ ++.+-+. ... .....+.+ ++.+++.++ .++.|..+|..+++. +..+.
T Consensus 174 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~v~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~ 248 (377)
T 3dwl_C 174 SAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG--GWVHAVGFSPSGNALAYAG--HDSSVTIAYPSAPEQPPRALITVK 248 (377)
T ss_dssp EECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS--SSEEEEEECTTSSCEEEEE--TTTEEC-CEECSTTSCEEECCCEE
T ss_pred EEEecccCCCccccccccccchhhhhhcc-cCC--ceEEEEEECCCCCEEEEEe--CCCcEEEEECCCCCCcceeeEeec
Confidence 8753 3333333 111 01112222 234566666 489999999999887 44444
Q ss_pred cCCceecceEE-eCCEEEEEeCceeEeecCCcc
Q 040693 339 TGATIYGGASV-SNGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 339 ~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~ 370 (382)
.......+... .+++++++.+++.+. +|..+
T Consensus 249 ~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 249 LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSSSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 43332233333 577777777666544 44443
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.037 Score=50.15 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=57.8
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-.+.+ ........+..++.||+....... .....+..+|+++.+ |+.-
T Consensus 175 ~~~~~~d~~~~--~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~v~~yd~~~~~--W~~~ 237 (301)
T 2vpj_A 175 NSVEKYDPHTG--HWTNVTPMA--TKRSGAGVALLNDHIYVVGGFDGT-----------AHLSSVEAYNIRTDS--WTTV 237 (301)
T ss_dssp CCEEEEETTTT--EEEEECCCS--SCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTTE--EEEE
T ss_pred ceEEEEeCCCC--cEEeCCCCC--cccccceEEEECCEEEEEeCCCCC-----------cccceEEEEeCCCCc--EEEC
Confidence 45899999875 677653221 122233344467788876433110 114669999998874 6653
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeecCC----CcEEEEeCCCCcEeEEE
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTYRQ----GPIYAMDVKTGKILWSY 337 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~~~----g~l~~ld~~tG~ilw~~ 337 (382)
.+.... .......++.+|+...... ..++.+|+++.+ |+.
T Consensus 238 ~~~p~~r~-~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 283 (301)
T 2vpj_A 238 TSMTTPRC-YVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS--WEV 283 (301)
T ss_dssp CCCSSCCB-SCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE--EEE
T ss_pred CCCCCccc-ceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe--EEE
Confidence 333222 2233445676776542111 458899988754 654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.01 Score=55.60 Aligned_cols=61 Identities=18% Similarity=0.077 Sum_probs=41.3
Q ss_pred eEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCC
Q 040693 56 SLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKC 135 (382)
Q Consensus 56 ~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (382)
.|+.+|+++|+.+-..... +... ..+.+.+++..|++...+
T Consensus 61 ~l~~~d~~~g~~~~lt~~~-----------~~~~--~~~~~spdg~~l~~~~~~-------------------------- 101 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTEGR-----------GDNT--FGGFLSPDDDALFYVKDG-------------------------- 101 (388)
T ss_dssp EEEEEETTTCEEEECCCSS-----------CBCS--SSCEECTTSSEEEEEETT--------------------------
T ss_pred eEEEEeCCCCceEEeeeCC-----------CCCc--cceEEcCCCCEEEEEeCC--------------------------
Confidence 5889999888876443321 1001 135678888888887643
Q ss_pred CCCCCCcceEEEEECCCCcEEEEEecC
Q 040693 136 IEPENHSNSLLALDLDTGKIVWYKQLG 162 (382)
Q Consensus 136 ~~~~~~~g~v~ald~~tG~~~W~~~~~ 162 (382)
..|+.+|+.+|+..-....+
T Consensus 102 -------~~l~~~d~~~g~~~~~~~~~ 121 (388)
T 3pe7_A 102 -------RNLMRVDLATLEENVVYQVP 121 (388)
T ss_dssp -------TEEEEEETTTCCEEEEEECC
T ss_pred -------CeEEEEECCCCcceeeeech
Confidence 68999999999877655544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0038 Score=57.96 Aligned_cols=183 Identities=10% Similarity=-0.027 Sum_probs=100.4
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+|+.+.+....... .+...|.++.. ..++.|.+-..++.+..+|
T Consensus 57 Dg~v~iwd~~~~~~~~~~~~~~v~----------------------~~~~~~~~~s~----s~D~~i~~w~~~~~~~~~~ 110 (343)
T 3lrv_A 57 DGALHFTQLKDSKTITTITTPNPR----------------------TGGEHPAIISR----GPCNRLLLLYPGNQITILD 110 (343)
T ss_dssp TTEEEEEEESSSSCEEEEEEECCC----------------------TTCCCCSEEEE----CSTTEEEEEETTTEEEEEE
T ss_pred CCcEEEEECCCCcEEEEEecCCce----------------------eeeeCCceEEe----cCCCeEEEEEccCceEEee
Confidence 489999999999999988732211 11122323321 1234444445556666777
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
..+++.+...............+.+..++..++.+ ..++.|..+|.++++........... .
T Consensus 111 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-----------------s~dg~i~~wd~~~~~~~~~~~~~~~~-~ 172 (343)
T 3lrv_A 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWA-----------------DNRGTIGFQSYEDDSQYIVHSAKSDV-E 172 (343)
T ss_dssp TTTCCEEEEEECCCSSCEEEEECCC---CCEEEEE-----------------ETTCCEEEEESSSSCEEEEECCCSSC-C
T ss_pred cCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEE-----------------eCCCcEEEEECCCCcEEEEEecCCCC-c
Confidence 77887776666432110000111111134444444 34588999999999986655433211 1
Q ss_pred CcceEEe-C-CEEEEeeecCCCcEEEEeCCCCcEe-EEEec-CCceecceEE-eCCEEEEEeCceeEeecCCccC
Q 040693 302 PGPVTVA-N-GVLFGGSTYRQGPIYAMDVKTGKIL-WSYDT-GATIYGGASV-SNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 302 ~~~~~~~-~-~~v~~~~~~~~g~l~~ld~~tG~il-w~~~~-~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
...+.+. + .++..++ .++.|..+|..+++.+ .+++. .......... .+++.+++.+++ .+.+|.+..
T Consensus 173 i~~~~~~pdg~~lasg~--~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~ 244 (343)
T 3lrv_A 173 YSSGVLHKDSLLLALYS--PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRK 244 (343)
T ss_dssp CCEEEECTTSCEEEEEC--TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTS
T ss_pred eEEEEECCCCCEEEEEc--CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCC
Confidence 2223332 3 4555555 4999999999999987 66655 2222223333 355555554555 566665543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0018 Score=62.85 Aligned_cols=192 Identities=11% Similarity=0.034 Sum_probs=103.4
Q ss_pred CcceEEEEECCCCcEEEEEecCCCc-ccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEc-------
Q 040693 141 HSNSLLALDLDTGKIVWYKQLGGYD-VWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQ------- 212 (382)
Q Consensus 141 ~~g~v~ald~~tG~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~------- 212 (382)
..+.|+.||.+|++++=+....... .+ .|++.-+| .++.+++..
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~------------------~Yd~~~~p----------~~~~mvsS~wg~p~~~ 213 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYL------------------AYDFWWNL----------PNEVLVSSEWAVPNTI 213 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCC------------------CCCEEEET----------TTTEEEECBCCCHHHH
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccc------------------cceEEECC----------CCCEEEEccCcCcccc
Confidence 3489999999999999887754321 11 11111111 023444442
Q ss_pred ------------cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccce--eeeCCeEEEEec-CccccccccCCCCCCCCCc
Q 040693 213 ------------KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGA--ATDERRIYTNIA-NSQHKNFNLKPSKNSTIAG 277 (382)
Q Consensus 213 ------------~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~--~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~g 277 (382)
....|..+|.++++++-+++++..+ .+...... .-++..+|+... ... ..++
T Consensus 214 ~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g-~~P~~i~f~~~Pdg~~aYV~~e~~~~------------~Lss 280 (462)
T 2ece_A 214 EDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN-RMALELRPLHDPTKLMGFINMVVSLK------------DLSS 280 (462)
T ss_dssp TTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE-EEEEEEEECSSTTCCEEEEEEEEETT------------TCCE
T ss_pred ccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC-CccceeEeeECCCCCEEEEEEeeecc------------CCCc
Confidence 3578999999999988888875210 00011111 115677888743 000 1234
Q ss_pred eEEEE-------------ECCCCcEEeeec-CCC--C--CCCCcceEE--eCCEEEEeeecCCCcEEEEeCC---CCcEe
Q 040693 278 GWVAM-------------DASNGNVLWSTA-DPS--N--GTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVK---TGKIL 334 (382)
Q Consensus 278 ~v~a~-------------d~~tG~~~W~~~-~~~--~--~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~---tG~il 334 (382)
+|..+ |+.+.+..++.+ ++. . ......+.+ ++..+|++.. ..+.|.++|.. +.+++
T Consensus 281 ~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnr-g~d~VavfdV~d~~~~~lv 359 (462)
T 2ece_A 281 SIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLW-GIGEVRQYDISNPFKPVLT 359 (462)
T ss_dssp EEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEET-TTTEEEEEECSSTTSCEEE
T ss_pred eEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeC-CCCEEEEEEecCCCCcEEE
Confidence 55543 333333333211 000 0 011222223 4568998874 56789999864 45778
Q ss_pred EEEecCCce--------------ecceEE--eCCEEEEEeC-----------ceeEeecC--CccCCCC
Q 040693 335 WSYDTGATI--------------YGGASV--SNGCIYMGNG-----------YKVTVGFG--NKNFTSG 374 (382)
Q Consensus 335 w~~~~~~~~--------------~~~p~~--~~g~lyv~~~-----------~g~~~~~~--~~~~~~g 374 (382)
-+.++++.+ -....+ .+.+|||+++ ++.-..++ ..|..+|
T Consensus 360 ~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G 428 (462)
T 2ece_A 360 GKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG 428 (462)
T ss_dssp EEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC
T ss_pred EEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcCCcccccccccCCCCceEEEEEEecCCCC
Confidence 888776321 111222 5779999993 22223344 5588888
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0039 Score=57.77 Aligned_cols=108 Identities=8% Similarity=-0.002 Sum_probs=60.3
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--e---CCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--D---ERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~---~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
+..++++..++.+..+|..+++..+.....-. ........... + +..++.+ ..++.|
T Consensus 172 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~l~s~-----------------~~dg~i 233 (379)
T 3jrp_A 172 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASV-----------------SQDRTC 233 (379)
T ss_dssp TCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEE-----------------ETTSCE
T ss_pred CCEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCeEEEE-----------------eCCCEE
Confidence 46788888899999999988876655432100 00112222222 3 3344443 345789
Q ss_pred EEEECCCCcEEeeecCCCCCCCCc---ceEE--eCCEEEEeeecCCCcEEEEeCCCCc
Q 040693 280 VAMDASNGNVLWSTADPSNGTAPG---PVTV--ANGVLFGGSTYRQGPIYAMDVKTGK 332 (382)
Q Consensus 280 ~a~d~~tG~~~W~~~~~~~~~~~~---~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ 332 (382)
..+|..+++..+............ .+.+ ++.+++.++. +|.|+.+|..++.
T Consensus 234 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGG--DNKVTLWKENLEG 289 (379)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEES--SSSEEEEEEEETT
T ss_pred EEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecC--CCcEEEEeCCCCC
Confidence 999999986544433222111111 1222 2345666653 8888888877543
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0066 Score=63.14 Aligned_cols=132 Identities=10% Similarity=0.138 Sum_probs=74.2
Q ss_pred ecEEEE--EccCcEEEEEeCCCCCeeeeeccCCCCCCC-Ccccceee-eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVA--VQKSGFAWALDRDSGSLIWSMEAGPGGLGG-GAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~--~~~~g~l~ald~~tG~~~W~~~~~~~~~~g-~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
++.|++ ++..| |+.+|+++++..--.. .. ... ........ .++.+++++. +.|.
T Consensus 482 ~g~lWi~~~t~~G-l~~~d~~~~~~~~~~~-~~--~~~~~~~~~i~~d~~g~lWigt~------------------~Gl~ 539 (758)
T 3ott_A 482 EGNVWVLLYNNKG-IDKINPRTREVTKLFA-DE--LTGEKSPNYLLCDEDGLLWVGFH------------------GGVM 539 (758)
T ss_dssp TSCEEEEETTCSS-EEEEETTTTEEEEECT-TT--SCGGGCEEEEEECTTSCEEEEET------------------TEEE
T ss_pred CCCEEEEccCCCC-cEEEeCCCCceEEecC-CC--cCCCcccceEEECCCCCEEEEec------------------CceE
Confidence 456776 66666 9999999886553211 11 111 01111222 4678888732 4599
Q ss_pred EEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEe
Q 040693 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGN 358 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~ 358 (382)
.+|+++++...-.....+......+..+++.+|+++ ...|+.+|+++.+..- +.++...+..... .+|+||+++
T Consensus 540 ~~~~~~~~~~~~~~~gl~~~~i~~i~~~~g~lWi~t---~~Gl~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~G~l~fG~ 615 (758)
T 3ott_A 540 RINPKDESQQSISFGSFSNNEILSMTCVKNSIWVST---TNGLWIIDRKTMDARQ-QNMTNKRFTSLLFDPKEDCVYLGG 615 (758)
T ss_dssp EECC--CCCCBCCCCC---CCEEEEEEETTEEEEEE---SSCEEEEETTTCCEEE-C--CCCCCSEEEEETTTTEEEEEC
T ss_pred EEecCCCceEEecccCCCccceEEEEECCCCEEEEC---CCCeEEEcCCCceeEE-ecCCCCceeeeEEECCCCcEEEec
Confidence 999988865422111111111223344678999998 5679999999887643 2333333333333 489999999
Q ss_pred Ccee
Q 040693 359 GYKV 362 (382)
Q Consensus 359 ~~g~ 362 (382)
.+|-
T Consensus 616 ~~Gl 619 (758)
T 3ott_A 616 ADGF 619 (758)
T ss_dssp BSEE
T ss_pred CCce
Confidence 8875
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.057 Score=50.57 Aligned_cols=146 Identities=12% Similarity=-0.020 Sum_probs=76.7
Q ss_pred cEEE-EEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee--CCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVV-AVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~-~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+.|| +....+.+..++.+ |+..-..-... .....+.+++ ++.+|++... ..+.|..+
T Consensus 128 g~ly~~d~~~~~I~~~~~d-G~~~~~l~~~~----l~~P~~iavdp~~g~ly~td~~---------------~~~~I~r~ 187 (349)
T 3v64_C 128 DKLYWTDSGTSRIEVANLD-GAHRKVLLWQS----LEKPRAIALHPMEGTIYWTDWG---------------NTPRIEAS 187 (349)
T ss_dssp TEEEEEETTTTEEEEEETT-SCSCEEEECTT----CSCEEEEEEETTTTEEEEEECS---------------SSCEEEEE
T ss_pred CeEEEEcCCCCeEEEEcCC-CCceEEEEeCC----CCCcceEEEecCcCeEEEeccC---------------CCCEEEEE
Confidence 3444 44456778888876 43322211110 0122334444 7889987432 12678888
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEE-ecCCceecceEEeCCEEEEEeC
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSY-DTGATIYGGASVSNGCIYMGNG 359 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~-~~~~~~~~~p~~~~g~lyv~~~ 359 (382)
+.......-..... ......++++ ++++|++.. ..+.|+.+|.+ |+..-.+ ......-...++.+++||++..
T Consensus 188 ~~dG~~~~~~~~~~--~~~PnGla~d~~~~~lY~aD~-~~~~I~~~~~d-G~~~~~~~~~~~~~P~giav~~~~ly~td~ 263 (349)
T 3v64_C 188 SMDGSGRRIIADTH--LFWPNGLTIDYAGRRMYWVDA-KHHVIERANLD-GSHRKAVISQGLPHPFAITVFEDSLYWTDW 263 (349)
T ss_dssp ETTSCSCEESCCSS--CSCEEEEEEETTTTEEEEEET-TTTEEEEEETT-SCSCEEEECSSCSSEEEEEEETTEEEEEET
T ss_pred eCCCCCcEEEEECC--CCCcceEEEeCCCCEEEEEEC-CCCEEEEEeCC-CCceEEEEeCCCCCceEEEEECCEEEEecC
Confidence 87543222111111 1122334554 689999875 56789999987 4332222 2211222345568999999986
Q ss_pred ceeEeecCCccCCCCCeE
Q 040693 360 YKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 360 ~g~~~~~~~~~~~~g~~l 377 (382)
.... +..++..+|+.+
T Consensus 264 ~~~~--V~~~~~~~G~~~ 279 (349)
T 3v64_C 264 HTKS--INSANKFTGKNQ 279 (349)
T ss_dssp TTTE--EEEEETTTCCSC
T ss_pred CCCe--EEEEEccCCCcc
Confidence 5442 344555556543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0094 Score=55.84 Aligned_cols=175 Identities=8% Similarity=0.037 Sum_probs=100.0
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceE-EEeeeCceeecEEEEEccCcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM-LSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
+.|..+|..+++..-........ .++. .....++ +..++++..++.+..+|
T Consensus 96 g~i~iwd~~~~~~~~~~~~~~h~--------------------------~~v~~~~~~~~~--~~~l~s~~~d~~i~iwd 147 (383)
T 3ei3_B 96 GDIILWDYDVQNKTSFIQGMGPG--------------------------DAITGMKFNQFN--TNQLFVSSIRGATTLRD 147 (383)
T ss_dssp SCEEEEETTSTTCEEEECCCSTT--------------------------CBEEEEEEETTE--EEEEEEEETTTEEEEEE
T ss_pred CeEEEEeCCCcccceeeecCCcC--------------------------CceeEEEeCCCC--CCEEEEEeCCCEEEEEE
Confidence 88999999999888777643321 1111 1122212 56788889999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
..+ +.+-.+..... .......... ++..++.+ ..++.|..+|+ +++.+.+.......
T Consensus 148 ~~~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~-~~~~~~~~~~h~~~ 206 (383)
T 3ei3_B 148 FSG-SVIQVFAKTDS--WDYWYCCVDVSVSRQMLATG-----------------DSTGRLLLLGL-DGHEIFKEKLHKAK 206 (383)
T ss_dssp TTS-CEEEEEECCCC--SSCCEEEEEEETTTTEEEEE-----------------ETTSEEEEEET-TSCEEEEEECSSSC
T ss_pred CCC-CceEEEeccCC--CCCCeEEEEECCCCCEEEEE-----------------CCCCCEEEEEC-CCCEEEEeccCCCc
Confidence 985 44444432211 0011122222 45555555 34588999998 68888877654321
Q ss_pred CCCcceEEe--CC-EEEEeeecCCCcEEEEeCCC----CcEeEEEecCCceecceEE-e-CCEEEEEeCceeEeecCCcc
Q 040693 300 TAPGPVTVA--NG-VLFGGSTYRQGPIYAMDVKT----GKILWSYDTGATIYGGASV-S-NGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 300 ~~~~~~~~~--~~-~v~~~~~~~~g~l~~ld~~t----G~ilw~~~~~~~~~~~p~~-~-~g~lyv~~~~g~~~~~~~~~ 370 (382)
...+.+. +. +++.++ .++.|..+|..+ ++.+........ ..+..+ . +++++++.+....+.+|.+.
T Consensus 207 --v~~~~~~~~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~-v~~~~~s~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 207 --VTHAEFNPRCDWLMATSS--VDATVKLWDLRNIKDKNSYIAEMPHEKP-VNAAYFNPTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp --EEEEEECSSCTTEEEEEE--TTSEEEEEEGGGCCSTTCEEEEEECSSC-EEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred --EEEEEECCCCCCEEEEEe--CCCEEEEEeCCCCCcccceEEEecCCCc-eEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence 2222232 33 666666 489999999987 667766643332 233333 2 45444444433345566554
Q ss_pred C
Q 040693 371 F 371 (382)
Q Consensus 371 ~ 371 (382)
.
T Consensus 282 ~ 282 (383)
T 3ei3_B 282 D 282 (383)
T ss_dssp B
T ss_pred C
Confidence 3
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.05 Score=49.63 Aligned_cols=126 Identities=17% Similarity=0.198 Sum_probs=72.9
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-.+.+ ........++.++.||+....... .....+..+|+++. .|+.-
T Consensus 137 ~~~~~yd~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~--~W~~~ 199 (308)
T 1zgk_A 137 NSVERYEPERD--EWHLVAPML--TRRIGVGVAVLNRLLYAVGGFDGT-----------NRLNSAECYYPERN--EWRMI 199 (308)
T ss_dssp CCEEEEETTTT--EEEECCCCS--SCCBSCEEEEETTEEEEECCBCSS-----------CBCCCEEEEETTTT--EEEEC
T ss_pred ccEEEECCCCC--eEeECCCCC--ccccceEEEEECCEEEEEeCCCCC-----------CcCceEEEEeCCCC--eEeeC
Confidence 35889998865 577643321 122223334467888886433110 11366999999876 57753
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeecC----CCcEEEEeCCCCcEeEEEec--CCc-eecceEEeCCEEEEEeCc
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTYR----QGPIYAMDVKTGKILWSYDT--GAT-IYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~~----~g~l~~ld~~tG~ilw~~~~--~~~-~~~~p~~~~g~lyv~~~~ 360 (382)
.+... ......+.++.+|+..... ...++.+|+++. .|+.-. +.. ...+.++.+++||+..+.
T Consensus 200 ~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 271 (308)
T 1zgk_A 200 TAMNTIR-SGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE--TWTFVAPMKHRRSALGITVHQGRIYVLGGY 271 (308)
T ss_dssp CCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT--EEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred CCCCCcc-ccceEEEECCEEEEEeCCCCCCccceEEEEeCCCC--cEEECCCCCCCccceEEEEECCEEEEEcCc
Confidence 23222 2333345577777754211 256999999865 476532 222 334556689999998764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0051 Score=63.33 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=66.8
Q ss_pred EEEEEeCCC-CCeeeeeccCCC-CCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 216 FAWALDRDS-GSLIWSMEAGPG-GLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 216 ~l~ald~~t-G~~~W~~~~~~~-~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
.|+.+|.++ |+.......... .......| -++..|++...+.. .....|+.+|+++|+..-..
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---pDg~~l~~~~~~~~------------~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW---RDPQHLSFQRQSRD------------QKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE---EETTEEEEEEEETT------------SSEEEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe---CCCCEEEEEEeccc------------CCeEEEEEEECCCCceEEEE
Confidence 788899998 886654321000 00011122 36777776543211 23467999999999876555
Q ss_pred cCCCCC---CCCcceEEeC-CEEEEeeecCCC--cEEEEeCCCCcEeEEEecCCceecce-EE--eCCEEEEEeCcee--
Q 040693 294 ADPSNG---TAPGPVTVAN-GVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGATIYGGA-SV--SNGCIYMGNGYKV-- 362 (382)
Q Consensus 294 ~~~~~~---~~~~~~~~~~-~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~~~~~p-~~--~~g~lyv~~~~g~-- 362 (382)
...... ....+....+ .+++.+. .++ .|+.+|.+ |+ +.++.........+ .+ .+..||+....+.
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~~~~--~~g~~~l~~~~~~-~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~ 404 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILWSSE--RTGFQHLYRIDSK-GK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESAR 404 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEEEEC--TTSSCEEEEECSS-SC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTT
T ss_pred EcCCCCcCCcCCceEECCCCeEEEEec--CCCccEEEEEcCC-CC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCc
Confidence 432211 0112222234 4444444 344 68888865 44 33332222222222 13 2345666555432
Q ss_pred EeecCCccC
Q 040693 363 TVGFGNKNF 371 (382)
Q Consensus 363 ~~~~~~~~~ 371 (382)
...+|.++.
T Consensus 405 ~~~l~~~~~ 413 (741)
T 2ecf_A 405 ESQIYAVPL 413 (741)
T ss_dssp CBEEEEEET
T ss_pred eEEEEEEEc
Confidence 345565554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0092 Score=55.57 Aligned_cols=175 Identities=11% Similarity=0.107 Sum_probs=87.5
Q ss_pred cceEEEEECC---CCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEE-EccC-cE
Q 040693 142 SNSLLALDLD---TGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVA-VQKS-GF 216 (382)
Q Consensus 142 ~g~v~ald~~---tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~-~~~~-g~ 216 (382)
...|+++|+. ||+++|...+...... +-. .+ +. ......++..+. ++.+|+ .+.. +.
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~-~~~--~~------------g~-~~~~~nDvavD~--~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDE-FEK--KA------------GK-RPFGVVQSAQDR--DGNSYVAFALGMPA 160 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHH-HHH--HH------------SS-CCEEEEEEEECT--TSCEEEEEEESSCE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCcccccc-ccc--cc------------cc-cccCCceeEECC--CCCEEEeCCCCCCe
Confidence 4789999999 9999999987532100 000 00 00 001133443333 233443 5666 88
Q ss_pred EEEEeCCCCC--eeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 217 AWALDRDSGS--LIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 217 l~ald~~tG~--~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
|+-+|++ |+ ..|..+.+.. .......+.++ ++.++++. ...+.|++||+++ ...|.
T Consensus 161 I~rV~pd-G~~~~~~~~~~~~~-~~~~G~nGIv~~pdg~~Liv~-----------------~~~g~L~~fD~~~-pv~~~ 220 (334)
T 2p9w_A 161 IARVSAD-GKTVSTFAWESGNG-GQRPGYSGITFDPHSNKLIAF-----------------GGPRALTAFDVSK-PYAWP 220 (334)
T ss_dssp EEEECTT-SCCEEEEEECCCCS-SSCCSCSEEEEETTTTEEEEE-----------------SSSSSEEEEECSS-SSCCC
T ss_pred EEEEeCC-CCEEeeeeecCCCc-ccccCcceEEEeCCCCEEEEE-----------------cCCCeEEEEcCCC-Cccee
Confidence 9999987 54 3365443221 11111223333 46667665 2368899999884 33344
Q ss_pred ecCC--C--CCCCC--c--ceEEeCC-EEEEeeecCCCcEEEEeCCCCcEeEEEe-----cCCc----eecceEE----e
Q 040693 293 TADP--S--NGTAP--G--PVTVANG-VLFGGSTYRQGPIYAMDVKTGKILWSYD-----TGAT----IYGGASV----S 350 (382)
Q Consensus 293 ~~~~--~--~~~~~--~--~~~~~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~-----~~~~----~~~~p~~----~ 350 (382)
++.. . ..... . |+ ..++ .+++... ...+..|-.++| |+.. .+.. .....++ .
T Consensus 221 v~~~~~G~~~~~~~~dgilp~-~~~G~vllV~~~--~~~~~~l~S~Dg---W~sa~~~g~~~~~~~~~g~tt~t~~~~~~ 294 (334)
T 2p9w_A 221 EPVKINGDFGTLSGTEKIVTV-PVGNESVLVGAR--APYAISFRSWDN---WKSANIKKTKRSELQNSGFTAVADYYQGS 294 (334)
T ss_dssp EECEESSCCCCCTTEEEEEEE-EETTEEEEEEEE--TTEEEEEECSST---TSEEEEEEEECGGGGSSCEEEEEEEEETT
T ss_pred ecccccCCcccccCccccccc-ccCCEEEEEEcC--CCCEEEEECCCC---cceeEEeeeecCccccCceeEEEEecccc
Confidence 5432 1 01111 1 22 2344 4466654 445566655555 4331 1111 1222222 5
Q ss_pred CCEEEEEeCc
Q 040693 351 NGCIYMGNGY 360 (382)
Q Consensus 351 ~g~lyv~~~~ 360 (382)
++++|+.+..
T Consensus 295 ~~~iYvv~~~ 304 (334)
T 2p9w_A 295 EQGLYAVSAF 304 (334)
T ss_dssp EEEEEEEECC
T ss_pred CCeEEEEeee
Confidence 7999999864
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.05 Score=49.34 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=58.4
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-...+ ........++.++.||+..+.... .....+..+|+++. .|+.-
T Consensus 173 ~~~~~yd~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~--~W~~~ 235 (302)
T 2xn4_A 173 STVECYNATTN--EWTYIAEMS--TRRSGAGVGVLNNLLYAVGGHDGP-----------LVRKSVEVYDPTTN--AWRQV 235 (302)
T ss_dssp CCEEEEETTTT--EEEEECCCS--SCCBSCEEEEETTEEEEECCBSSS-----------SBCCCEEEEETTTT--EEEEE
T ss_pred cEEEEEeCCCC--cEEECCCCc--cccccccEEEECCEEEEECCCCCC-----------cccceEEEEeCCCC--CEeeC
Confidence 35889998865 577643221 112223334467788876432110 12356999999886 47653
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeecC----CCcEEEEeCCCCcEeEEE
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTYR----QGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~~----~g~l~~ld~~tG~ilw~~ 337 (382)
.+... ........++.+|+..... ...++++|+++.+ |+.
T Consensus 236 ~~~~~~r-~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 236 ADMNMCR-RNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp CCCSSCC-BSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred CCCCCcc-ccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 33322 2333445577777654211 2358999998764 765
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0061 Score=56.19 Aligned_cols=164 Identities=10% Similarity=0.025 Sum_probs=83.2
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-e-CCeEEEEecCcccc--cc--ccCCCCCCCCCceE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-D-ERRIYTNIANSQHK--NF--NLKPSKNSTIAGGW 279 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~-~~~v~~~~~~~~~~--~~--~~~~~~~~~~~g~v 279 (382)
+.|++++..+.++.+|.++|+...-...... .........++ . ++.+|++....... .+ .+. .....+.|
T Consensus 92 g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~-~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~---~~~~~g~v 167 (322)
T 2fp8_A 92 NQLYIVDCYYHLSVVGSEGGHATQLATSVDG-VPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD---TSDKTGRL 167 (322)
T ss_dssp TEEEEEETTTEEEEECTTCEECEEEESEETT-EECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH---HTCCCEEE
T ss_pred CcEEEEECCCCEEEEeCCCCEEEEecccCCC-CcccccceEEEecCCCEEEEECCcccccccccceehc---ccCCCceE
Confidence 5677765555599999887754322111100 00001112233 3 57899875431100 00 000 00234789
Q ss_pred EEEECCCCcEEeeec-CCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCC---cEeEEEecCCceecceEE-eCC
Q 040693 280 VAMDASNGNVLWSTA-DPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTG---KILWSYDTGATIYGGASV-SNG 352 (382)
Q Consensus 280 ~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG---~ilw~~~~~~~~~~~p~~-~~g 352 (382)
+.+|+.+|+..-... ... ..-+.+. ++.+|++.. ..+.|+.++.++. +..--...++ -...++ .+|
T Consensus 168 ~~~d~~~~~~~~~~~~~~~----p~gia~~~dg~~lyv~d~-~~~~I~~~~~~~~~~~~~~~~~~~~g--P~gi~~d~~G 240 (322)
T 2fp8_A 168 IKYDPSTKETTLLLKELHV----PGGAEVSADSSFVLVAEF-LSHQIVKYWLEGPKKGTAEVLVKIPN--PGNIKRNADG 240 (322)
T ss_dssp EEEETTTTEEEEEEEEESC----CCEEEECTTSSEEEEEEG-GGTEEEEEESSSTTTTCEEEEEECSS--EEEEEECTTS
T ss_pred EEEeCCCCEEEEeccCCcc----CcceEECCCCCEEEEEeC-CCCeEEEEECCCCcCCccceEEeCCC--CCCeEECCCC
Confidence 999999887543222 111 1223343 357888763 4688999998752 2211112222 122233 467
Q ss_pred EEEEEeCc--------eeEeecCCccCCCCCeEEEEE
Q 040693 353 CIYMGNGY--------KVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 353 ~lyv~~~~--------g~~~~~~~~~~~~g~~l~~~~ 381 (382)
+|||+... +....++.+++ .|+.+-.|.
T Consensus 241 ~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~ 276 (322)
T 2fp8_A 241 HFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIP 276 (322)
T ss_dssp CEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEE
T ss_pred CEEEEecCcccccccCCCccEEEEECC-CCCEEEEEE
Confidence 89999765 22334566776 477776553
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.012 Score=52.00 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=38.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|..+|++.......... ..+.+.+++..++++. +
T Consensus 21 ~~~i~~~d~~~~~~~~~~~~~~~v--------------~~~~~spdg~~l~~~~-~------------------------ 61 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRVVWQTPELF--------------EAPNWSPDGKYLLLNS-E------------------------ 61 (297)
T ss_dssp CEEEEEEETTTTEEEEEEEESSCC--------------EEEEECTTSSEEEEEE-T------------------------
T ss_pred ceeEEEEeCCCCceeeeccCCcce--------------EeeEECCCCCEEEEEc-C------------------------
Confidence 789999999999987554431111 2466777777777653 2
Q ss_pred CCCCCCCCcceEEEEECCC-CcEE
Q 040693 134 KCIEPENHSNSLLALDLDT-GKIV 156 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~t-G~~~ 156 (382)
+.|+.+|..+ |+..
T Consensus 62 ---------~~i~~~d~~~~~~~~ 76 (297)
T 2ojh_A 62 ---------GLLYRLSLAGDPSPE 76 (297)
T ss_dssp ---------TEEEEEESSSCCSCE
T ss_pred ---------CeEEEEeCCCCCCce
Confidence 7899999998 7765
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.041 Score=50.45 Aligned_cols=123 Identities=15% Similarity=0.204 Sum_probs=70.8
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-.+.+ ........++.++.||+..+.... .....+..+|+++.+ |+.-
T Consensus 175 ~~~~~yd~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~~~~yd~~~~~--W~~~ 237 (318)
T 2woz_A 175 NRVFIYNPKKG--DWKDLAPMK--TPRSMFGVAIHKGKIVIAGGVTED-----------GLSASVEAFDLKTNK--WEVM 237 (318)
T ss_dssp CCEEEEETTTT--EEEEECCCS--SCCBSCEEEEETTEEEEEEEEETT-----------EEEEEEEEEETTTCC--EEEC
T ss_pred ceEEEEcCCCC--EEEECCCCC--CCcccceEEEECCEEEEEcCcCCC-----------CccceEEEEECCCCe--EEEC
Confidence 35999999875 587654321 122223334467788876432110 112568899998874 7764
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeec-------------CCCcEEEEeCCCCcEeEEEecCC-ceecceEEeCCEEEEE
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTY-------------RQGPIYAMDVKTGKILWSYDTGA-TIYGGASVSNGCIYMG 357 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~-------------~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~~~g~lyv~ 357 (382)
.+... ......+.++.+|+.... ....++++|+++. .|+.-.+. ....+.++.++++|+.
T Consensus 238 ~~~p~~r-~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~r~~~~~~~~~~~iyi~ 313 (318)
T 2woz_A 238 TEFPQER-SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK--EWAGMLKEIRYASGASCLATRLNLF 313 (318)
T ss_dssp CCCSSCC-BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT--EEEEEESCCGGGTTCEEEEEEEEGG
T ss_pred CCCCCcc-cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC--EehhhcccccccccceeeCCEEEEE
Confidence 23222 233344556777765321 1256899999865 47654333 3445566788888875
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.50 E-value=0.009 Score=57.41 Aligned_cols=101 Identities=12% Similarity=0.011 Sum_probs=59.3
Q ss_pred ecEEEEEccCcEEEEEeCCCC---CeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 205 HDIVVAVQKSGFAWALDRDSG---SLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG---~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
...++++..++.+..+|..++ +.+....... ........ ++..++++. ..++.|
T Consensus 244 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-----~~v~~i~~~p~~~~~l~tg----------------~~dg~v 302 (430)
T 2xyi_A 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-----AEVNCLSFNPYSEFILATG----------------SADKTV 302 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS-----SCEEEEEECSSCTTEEEEE----------------ETTSEE
T ss_pred CCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC-----CCeEEEEeCCCCCCEEEEE----------------eCCCeE
Confidence 567788888999999999987 4555554221 11122222 344344332 345889
Q ss_pred EEEECCC-CcEEeeecCCCCCCCCcceEEe--CC-EEEEeeecCCCcEEEEeCCC
Q 040693 280 VAMDASN-GNVLWSTADPSNGTAPGPVTVA--NG-VLFGGSTYRQGPIYAMDVKT 330 (382)
Q Consensus 280 ~a~d~~t-G~~~W~~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~g~l~~ld~~t 330 (382)
..+|.++ ++++.+...... ....+... +. +++.++ .++.|..+|..+
T Consensus 303 ~vwd~~~~~~~~~~~~~h~~--~v~~i~~sp~~~~~l~s~~--~d~~i~iwd~~~ 353 (430)
T 2xyi_A 303 ALWDLRNLKLKLHSFESHKD--EIFQVQWSPHNETILASSG--TDRRLHVWDLSK 353 (430)
T ss_dssp EEEETTCTTSCSEEEECCSS--CEEEEEECSSCTTEEEEEE--TTSCCEEEEGGG
T ss_pred EEEeCCCCCCCeEEeecCCC--CEEEEEECCCCCCEEEEEe--CCCcEEEEeCCC
Confidence 9999998 455555543321 11222232 33 444454 489999999876
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.48 E-value=0.027 Score=52.09 Aligned_cols=173 Identities=10% Similarity=0.009 Sum_probs=88.9
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+|+.+-++......+. -..+.++ +..|++++.|+.+..+|
T Consensus 97 D~~v~lwd~~~~~~~~~~~~h~~~v~---------------------------~v~~sp~---~~~l~s~~~d~~i~~wd 146 (343)
T 2xzm_R 97 DKTLRLWDLRTGTTYKRFVGHQSEVY---------------------------SVAFSPD---NRQILSAGAEREIKLWN 146 (343)
T ss_dssp TSEEEEEETTSSCEEEEEECCCSCEE---------------------------EEEECSS---TTEEEEEETTSCEEEEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCCcEE---------------------------EEEECCC---CCEEEEEcCCCEEEEEe
Confidence 48999999999998877654322111 1112222 35778888899999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--e----------CCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--D----------ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV 289 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~----------~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~ 289 (382)
.. ++.......... .......... + ...+..+ ..++.|..+| .+++.
T Consensus 147 ~~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~-----------------~~d~~i~iwd-~~~~~ 205 (343)
T 2xzm_R 147 IL-GECKFSSAEKEN--HSDWVSCVRYSPIMKSANKVQPFAPYFASV-----------------GWDGRLKVWN-TNFQI 205 (343)
T ss_dssp SS-SCEEEECCTTTS--CSSCEEEEEECCCCCSCSCCCSSCCEEEEE-----------------ETTSEEEEEE-TTTEE
T ss_pred cc-CCceeeeecccC--CCceeeeeeeccccccccccCCCCCEEEEE-----------------cCCCEEEEEc-CCCce
Confidence 87 333332221100 0000011110 1 1233333 3457899999 45666
Q ss_pred EeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCC-CCcEeEEEecCCceecceEE-eCCEEEEEeCceeEee
Q 040693 290 LWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVK-TGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVG 365 (382)
Q Consensus 290 ~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~-tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~ 365 (382)
..+....... ...+.+ ++.++..++ .++.|...|.. .++....+..+..+ ....+ .+++++++..++. +.
T Consensus 206 ~~~~~~h~~~--v~~~~~s~~g~~l~sgs--~dg~v~iwd~~~~~~~~~~~~~~~~v-~~v~~sp~~~~la~~~d~~-v~ 279 (343)
T 2xzm_R 206 RYTFKAHESN--VNHLSISPNGKYIATGG--KDKKLLIWDILNLTYPQREFDAGSTI-NQIAFNPKLQWVAVGTDQG-VK 279 (343)
T ss_dssp EEEEECCSSC--EEEEEECTTSSEEEEEE--TTCEEEEEESSCCSSCSEEEECSSCE-EEEEECSSSCEEEEEESSC-EE
T ss_pred eEEEcCcccc--ceEEEECCCCCEEEEEc--CCCeEEEEECCCCcccceeecCCCcE-EEEEECCCCCEEEEECCCC-EE
Confidence 6555443211 122223 234666666 48999999984 45555554443322 22222 2444444443333 45
Q ss_pred cCCccC
Q 040693 366 FGNKNF 371 (382)
Q Consensus 366 ~~~~~~ 371 (382)
+|.+..
T Consensus 280 iw~~~~ 285 (343)
T 2xzm_R 280 IFNLMT 285 (343)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 555443
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.039 Score=56.78 Aligned_cols=102 Identities=11% Similarity=0.045 Sum_probs=58.5
Q ss_pred CceEEEEECCC------CcEEeeecCCCCCCCCcceEEeCCEEEEeeec--CCCcEEEEeCCCCcE-eEEEecCC-c--e
Q 040693 276 AGGWVAMDASN------GNVLWSTADPSNGTAPGPVTVANGVLFGGSTY--RQGPIYAMDVKTGKI-LWSYDTGA-T--I 343 (382)
Q Consensus 276 ~g~v~a~d~~t------G~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~g~l~~ld~~tG~i-lw~~~~~~-~--~ 343 (382)
...|+.+|+.+ |+..++.-..........+..+++.+|+.+.. ....|+.+|.++++. .|+.-++. . .
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred ccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 46799999987 64333322111111223344467777776641 134699999988753 45543332 1 3
Q ss_pred ecceEEe-CCEEEEEeCceeEeecCCccCCCCCeE
Q 040693 344 YGGASVS-NGCIYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 344 ~~~p~~~-~g~lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
...+... +++|++....+....++.++..+|+.+
T Consensus 338 ~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~ 372 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL 372 (710)
T ss_dssp EEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE
Confidence 4445555 788888766555455666666666644
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.06 Score=48.90 Aligned_cols=103 Identities=14% Similarity=0.168 Sum_probs=58.3
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|.++. .|+.-.+.+ ........++.++.||+..+.... .....+..+|+++.+ |+.-
T Consensus 169 ~~~~~yd~~~~--~W~~~~~~p--~~r~~~~~~~~~~~i~v~GG~~~~-----------~~~~~~~~yd~~~~~--W~~~ 231 (306)
T 3ii7_A 169 NSCEVYDPATE--TWTELCPMI--EARKNHGLVFVKDKIFAVGGQNGL-----------GGLDNVEYYDIKLNE--WKMV 231 (306)
T ss_dssp CCEEEEETTTT--EEEEECCCS--SCCBSCEEEEETTEEEEECCEETT-----------EEBCCEEEEETTTTE--EEEC
T ss_pred ceEEEeCCCCC--eEEECCCcc--chhhcceEEEECCEEEEEeCCCCC-----------CCCceEEEeeCCCCc--EEEC
Confidence 45899999876 577654321 122233334467788876432110 113569999998874 7754
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeec----CCCcEEEEeCCCCcEeEEE
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTY----RQGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~----~~g~l~~ld~~tG~ilw~~ 337 (382)
.+... ......+.++.+|+.... ....++++|+++.+ |+.
T Consensus 232 ~~~p~~r-~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~ 277 (306)
T 3ii7_A 232 SPMPWKG-VTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK--WVA 277 (306)
T ss_dssp CCCSCCB-SCCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE--EEE
T ss_pred CCCCCCc-cceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEe
Confidence 33222 233334457767665421 12568999998654 654
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.46 E-value=0.066 Score=49.29 Aligned_cols=145 Identities=12% Similarity=0.021 Sum_probs=77.1
Q ss_pred cEEEE-EccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVVA-VQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~~-~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+.||+ ....+.+..+|.+......-.... .....+.++ .++.+|++... ..+.|+.+
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~-----~~~P~~iavdp~~g~ly~~d~~---------------~~~~I~~~ 148 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTLFREN-----GSKPRAIVVDPVHGFMYWTDWG---------------TPAKIKKG 148 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEEEECT-----TCCEEEEEEETTTTEEEEEECS---------------SSCEEEEE
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEEEECC-----CCCcceEEeCCCCCEEEEEccC---------------CCCeEEEE
Confidence 34444 455678888887733222222211 112233444 37889987422 12578888
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEE-ecCC--ceecceEEeCCEEEEE
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSY-DTGA--TIYGGASVSNGCIYMG 357 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~-~~~~--~~~~~p~~~~g~lyv~ 357 (382)
+.. |+..-..-... ......+.++ ++++|++.. ..+.|..+|.+ |+.+-.+ .... ..-...++.+++||++
T Consensus 149 ~~d-G~~~~~~~~~~-~~~P~gla~d~~~~~lY~~D~-~~~~I~~~d~d-g~~~~~~~~~~~~~~~P~giav~~~~ly~~ 224 (316)
T 1ijq_A 149 GLN-GVDIYSLVTEN-IQWPNGITLDLLSGRLYWVDS-KLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFWT 224 (316)
T ss_dssp ETT-SCCEEEEECSS-CSCEEEEEEETTTTEEEEEET-TTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEETTEEEEE
T ss_pred cCC-CCCeEEEEECC-CCCceEEEEeccCCEEEEEEC-CCCeEEEEecC-CCceEEEeecCCccCCcEEEEEECCEEEEE
Confidence 874 43322211111 1122344555 689999875 56789999987 4333222 2111 1223445688999999
Q ss_pred eCceeEeecCCccCCCCCe
Q 040693 358 NGYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 358 ~~~g~~~~~~~~~~~~g~~ 376 (382)
...... ++.++..+|+.
T Consensus 225 d~~~~~--V~~~~~~~g~~ 241 (316)
T 1ijq_A 225 DIINEA--IFSANRLTGSD 241 (316)
T ss_dssp ETTTTE--EEEEETTTCCC
T ss_pred ECCCCe--EEEEeCCCCcc
Confidence 865442 34455555654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.017 Score=54.14 Aligned_cols=146 Identities=13% Similarity=0.097 Sum_probs=72.2
Q ss_pred cCcEEEEEeCC-CCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC-CCc
Q 040693 213 KSGFAWALDRD-SGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS-NGN 288 (382)
Q Consensus 213 ~~g~l~ald~~-tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~-tG~ 288 (382)
.++.+..++.. +|++.-....-.. ..+.......+ ++..+|++.. ..+.|..+|.. +|+
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~spdG~~l~~~~~----------------~~~~v~~~~~~~~g~ 179 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEY-QENTGIHGMVFDPTETYLYSADL----------------TANKLWTHRKLASGE 179 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEET----------------TTTEEEEEEECTTSC
T ss_pred CCceEEEEccCCCCcCcceEeeEEe-CCCCcceEEEECCCCCEEEEEcC----------------CCCEEEEEEECCCCC
Confidence 46667777765 5765432221000 00112222222 5567777521 23679999998 887
Q ss_pred EEe--eecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEe--CCCCcEeE---EEe-cCCc------------eecc
Q 040693 289 VLW--STADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMD--VKTGKILW---SYD-TGAT------------IYGG 346 (382)
Q Consensus 289 ~~W--~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld--~~tG~ilw---~~~-~~~~------------~~~~ 346 (382)
..- +...+........+.+ ++.++|+... .++.+..++ .++|+... +.. ++.. ....
T Consensus 180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~-~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 258 (365)
T 1jof_A 180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALME-AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp EEEEEEEECSSTTCCEEEEEECTTSSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred EEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC-CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCccccccccccccc
Confidence 643 2332210011112233 2457887763 356777664 55788643 232 2211 1223
Q ss_pred eE-E-eC-CEEEEEeCcee-----EeecCCccCCCCCeE
Q 040693 347 AS-V-SN-GCIYMGNGYKV-----TVGFGNKNFTSGTSL 377 (382)
Q Consensus 347 p~-~-~~-g~lyv~~~~g~-----~~~~~~~~~~~g~~l 377 (382)
+. + .+ ..||+++.... .+.+|.++. +|++.
T Consensus 259 i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~-~g~~~ 296 (365)
T 1jof_A 259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRD-CGSIE 296 (365)
T ss_dssp EEEECTTSSEEEEEEEESSTTSCCEEEEEEECT-TSCEE
T ss_pred EEEECCCCCEEEEECCCCCCCCCCeEEEEEECC-CCCEE
Confidence 33 3 24 46787765443 566777764 56654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.013 Score=59.88 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=70.0
Q ss_pred cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCC-cE
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG-NV 289 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG-~~ 289 (382)
.+..++.+|.++|+......... .........+ ++..|++...+.. .....|+.+|+.+| +.
T Consensus 233 ~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~~~~~~~~------------~~~~~v~~~d~~~g~~~ 297 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQTGEP---KEKFLTNLSWSPDENILYVAEVNRA------------QNECKVNAYDAETGRFV 297 (706)
T ss_dssp CEEEEEEEETTTTEEEECCCCSC---TTCEEEEEEECTTSSEEEEEEECTT------------SCEEEEEEEETTTCCEE
T ss_pred CeeEEEEEECCCCceEeeccCCC---CceeEeeEEEECCCCEEEEEEeCCC------------CCeeEEEEEECCCCcee
Confidence 34679999999998765543211 0111122222 5666766533211 12357999999999 43
Q ss_pred EeeecCCCC-CC-CCcceEE-e--CC-EEEEeeecCCC--cEEEEeCCCCcEeEEEecCCc-eecceEE--eCCEEEEEe
Q 040693 290 LWSTADPSN-GT-APGPVTV-A--NG-VLFGGSTYRQG--PIYAMDVKTGKILWSYDTGAT-IYGGASV--SNGCIYMGN 358 (382)
Q Consensus 290 ~W~~~~~~~-~~-~~~~~~~-~--~~-~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~-~~~~p~~--~~g~lyv~~ 358 (382)
.-....... .. ....+.+ . ++ .++.+. .++ .|+.+|.+ |+.+-++..+.. ....+.+ .+..||+++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~--~~g~~~l~~~~~~-~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~ 374 (706)
T 2z3z_A 298 RTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR--RDGWNHLYLYDTT-GRLIRQVTKGEWEVTNFAGFDPKGTRLYFES 374 (706)
T ss_dssp EEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC--TTSSCEEEEEETT-SCEEEECCCSSSCEEEEEEECTTSSEEEEEE
T ss_pred eEEEEccCCCeECccCCceeecCCCCEEEEEEc--cCCccEEEEEECC-CCEEEecCCCCeEEEeeeEEcCCCCEEEEEe
Confidence 322211110 00 0112223 2 44 444443 244 57777754 554444433221 2222333 345677766
Q ss_pred Ccee--EeecCCccCCCCC
Q 040693 359 GYKV--TVGFGNKNFTSGT 375 (382)
Q Consensus 359 ~~g~--~~~~~~~~~~~g~ 375 (382)
.... ...+|.++..+|+
T Consensus 375 ~~~~~~~~~l~~~d~~~~~ 393 (706)
T 2z3z_A 375 TEASPLERHFYCIDIKGGK 393 (706)
T ss_dssp SSSCTTCBEEEEEETTCCC
T ss_pred cCCCCceEEEEEEEcCCCC
Confidence 5533 2456666666654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.033 Score=50.67 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=69.0
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
+.|+.+|+++|+..-..... ...+.+. ++..+|+...... ....+.|+.+|...+.+.-.
T Consensus 169 ~~v~~~d~~~g~~~~~~~~~-------~p~gl~~spdg~~lyv~~~~~~-----------~~~~~~i~~~~~~~~~l~~~ 230 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMADLD-------HPNGLAFSPDEQTLYVSQTPEQ-----------GHGSVEITAFAWRDGALHDR 230 (305)
T ss_dssp EEEEEECSSSCCCEEEEEES-------SEEEEEECTTSSEEEEEECCC--------------CCCEEEEEEEETTEEEEE
T ss_pred CeEEEEcCCCCcEEEEecCC-------CCcceEEcCCCCEEEEEecCCc-----------CCCCCEEEEEEecCCCccCC
Confidence 67999999888754322211 1112222 5567888632200 00125789999876542111
Q ss_pred ecC-CCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCc
Q 040693 293 TAD-PSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGY 360 (382)
Q Consensus 293 ~~~-~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~ 360 (382)
... .........+.++ ++.+|+++ .+.|+.+|+ +|+.+-++..+.. ..+.+. .+++||+++..
T Consensus 231 ~~~~~~~~~~pdgi~~d~~G~lwv~~---~~gv~~~~~-~g~~~~~~~~~~~-~~~~~f~~d~~~L~it~~~ 297 (305)
T 3dr2_A 231 RHFASVPDGLPDGFCVDRGGWLWSSS---GTGVCVFDS-DGQLLGHIPTPGT-ASNCTFDQAQQRLFITGGP 297 (305)
T ss_dssp EEEECCSSSCCCSEEECTTSCEEECC---SSEEEEECT-TSCEEEEEECSSC-CCEEEECTTSCEEEEEETT
T ss_pred eEEEECCCCCCCeEEECCCCCEEEec---CCcEEEECC-CCCEEEEEECCCc-eeEEEEeCCCCEEEEEcCC
Confidence 111 0001112234444 57789887 456999998 5999888887653 333444 45689998876
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.027 Score=53.58 Aligned_cols=116 Identities=7% Similarity=0.051 Sum_probs=63.8
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeee-ccCCCCC--CCCcccceee--eC-CeEEEEecCccccccccCCCCCCCCCce
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSM-EAGPGGL--GGGAMWGAAT--DE-RRIYTNIANSQHKNFNLKPSKNSTIAGG 278 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~-~~~~~~~--~g~~~~~~~~--~~-~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (382)
+..++++ .|+.+..+|..++...... ...+... .......... ++ ..++.+ ..++.
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~-----------------~~dg~ 250 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS-----------------SSKGT 250 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE-----------------ETTSC
T ss_pred CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE-----------------eCCCe
Confidence 3566666 7999999999855444432 1111000 0111222222 33 455554 34588
Q ss_pred EEEEECCCCcE----EeeecCCCCC----------CCCcceEEe-C-CEEEEeeecCCCcEEEEeCCC-CcEeEEEecCC
Q 040693 279 WVAMDASNGNV----LWSTADPSNG----------TAPGPVTVA-N-GVLFGGSTYRQGPIYAMDVKT-GKILWSYDTGA 341 (382)
Q Consensus 279 v~a~d~~tG~~----~W~~~~~~~~----------~~~~~~~~~-~-~~v~~~~~~~~g~l~~ld~~t-G~ilw~~~~~~ 341 (382)
|..+|.++++. .......... .....+.+. + .+++.++ .+.|..+|..+ ++.+..+....
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~---~~~v~iwd~~~~~~~~~~~~~~~ 327 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD---YLSVKVWDLNMENRPVETYQVHE 327 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE---SSEEEEEETTCCSSCSCCEESCG
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee---CCeEEEEeCCCCccccceeeccc
Confidence 99999999986 4444433210 011222232 3 4555444 49999999987 88877776543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.011 Score=53.46 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=18.2
Q ss_pred ecEEEEEccCcEEEEEeCCCCCee
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLI 228 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~ 228 (382)
...++++..++.+...+..+++..
T Consensus 182 ~~~l~~~~~~~~~~~~~~~~~~~~ 205 (351)
T 3f3f_A 182 PEKLAVSALEQAIIYQRGKDGKLH 205 (351)
T ss_dssp CCEEEEEETTEEEEEEECTTSCEE
T ss_pred CcEEEEecCCCcEEEEccCCCcee
Confidence 567788888888877787777763
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0073 Score=56.52 Aligned_cols=97 Identities=5% Similarity=0.001 Sum_probs=52.4
Q ss_pred ceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeee--------------cCCCcEEEEeCCCCcEeEEEecC
Q 040693 277 GGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGST--------------YRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~--------------~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
+.|+.+|+++|+..-....+. .. +... ++.+++.... .....|+.+|+++|++..-....
T Consensus 264 ~~l~~~d~~~g~~~~l~~~~~---~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~ 339 (396)
T 3c5m_A 264 RVIYKANPETLENEEVMVMPP---CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHS 339 (396)
T ss_dssp EEEEEECTTTCCEEEEEECCS---EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECC
T ss_pred ceEEEEECCCCCeEEeeeCCC---CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCC
Confidence 459999999998765444432 11 2222 3344444321 02468999999988754322222
Q ss_pred Cce----------ecceEE--eCCEEEEEeCceeEeecCCccCCCCCeE
Q 040693 341 ATI----------YGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 341 ~~~----------~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
... ...+.. .+.+|++.+.......+|.++..+++..
T Consensus 340 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 340 TSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred CccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 111 233443 3446766665434456777777666543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0061 Score=56.51 Aligned_cols=155 Identities=15% Similarity=0.161 Sum_probs=76.4
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
++.++++..++ |+.+|.++|+...-...... ..........+ .++.+|++...... ....+.|+.+|
T Consensus 100 dg~l~v~~~~g-l~~~d~~~g~~~~~~~~~~~-~~~~~~~~i~~d~~G~l~v~~~~~~~----------~~~~~~l~~~~ 167 (326)
T 2ghs_A 100 DSKQLIASDDG-LFLRDTATGVLTLHAELESD-LPGNRSNDGRMHPSGALWIGTMGRKA----------ETGAGSIYHVA 167 (326)
T ss_dssp TTEEEEEETTE-EEEEETTTCCEEEEECSSTT-CTTEEEEEEEECTTSCEEEEEEETTC----------CTTCEEEEEEE
T ss_pred CCeEEEEECCC-EEEEECCCCcEEEEeeCCCC-CCCCCCCCEEECCCCCEEEEeCCCcC----------CCCceEEEEEe
Confidence 34455555554 99999999986533322110 01111122222 35567776432100 01346799999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCC--CC-cE----eEE-EecCCceecceEE-eCC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVK--TG-KI----LWS-YDTGATIYGGASV-SNG 352 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~--tG-~i----lw~-~~~~~~~~~~p~~-~~g 352 (382)
+|+..-...... ....+.+. +..+|+... ..+.|+.+|.+ +| ++ ++. +...........+ .+|
T Consensus 168 --~g~~~~~~~~~~---~~~~i~~s~dg~~lyv~~~-~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G 241 (326)
T 2ghs_A 168 --KGKVTKLFADIS---IPNSICFSPDGTTGYFVDT-KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG 241 (326)
T ss_dssp --TTEEEEEEEEES---SEEEEEECTTSCEEEEEET-TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS
T ss_pred --CCcEEEeeCCCc---ccCCeEEcCCCCEEEEEEC-CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC
Confidence 676543222111 11123332 346777653 46789999975 77 42 221 1111112222333 468
Q ss_pred EEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 353 CIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
+||+++..+. +++.+++ +|+.+-.+
T Consensus 242 ~lwva~~~~~--~v~~~d~-~g~~~~~i 266 (326)
T 2ghs_A 242 HIWNARWGEG--AVDRYDT-DGNHIARY 266 (326)
T ss_dssp CEEEEEETTT--EEEEECT-TCCEEEEE
T ss_pred CEEEEEeCCC--EEEEECC-CCCEEEEE
Confidence 8999874322 2344565 56665544
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.36 E-value=0.11 Score=49.63 Aligned_cols=147 Identities=12% Similarity=0.024 Sum_probs=79.3
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee--CCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+.++....+.+..+|.+.....-..... .....+.+++ ++.||++... ..+.|..++
T Consensus 172 ~lY~~d~~~~~I~~~~~~g~~~~~l~~~~-----~~~P~~iavdp~~g~ly~td~~---------------~~~~I~~~~ 231 (400)
T 3p5b_L 172 NIYWTDSVLGTVSVADTKGVKRKTLFREN-----GSKPRAIVVDPVHGFMYWTDWG---------------TPAKIKKGG 231 (400)
T ss_dssp EEEEEETTTTEEEEECTTTCSEEEEEECS-----SCCEEEEEEETTTTEEEEEECS---------------SSCCEEEEE
T ss_pred ceEEEECCCCeEEEEeCCCCceEEEEeCC-----CCCcceEEEecccCeEEEEeCC---------------CCCEEEEEe
Confidence 33344445667887877643322222211 1112334443 6888887432 125688888
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC---ceecceEEeCCEEEEEe
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA---TIYGGASVSNGCIYMGN 358 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~---~~~~~p~~~~g~lyv~~ 358 (382)
.......-...... .....++++ ++++|++.. ..+.|..+|.+ |+.+..+-... ..-.+.++.+++||++.
T Consensus 232 ~dG~~~~~~~~~~l--~~P~glavd~~~~~lY~aD~-~~~~I~~~d~d-G~~~~~~~~~~~~l~~P~gl~v~~~~lywtd 307 (400)
T 3p5b_L 232 LNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDS-KLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 307 (400)
T ss_dssp TTSCSCEEEECSSC--SCEEEEEEETTTTEEEEEET-TTTEEEEEETT-SCCCEEEEECSSTTSSEEEEEEETTEEEEEE
T ss_pred CCCCccEEEEECCC--CceEEEEEEeCCCEEEEEEC-CCCEEEEEeCC-CCccEEEEeCCCCCCCCEEEEEeCCEEEEec
Confidence 75433222222111 123345555 689999875 56789999986 44444442221 12234456899999998
Q ss_pred CceeEeecCCccCCCCCeEE
Q 040693 359 GYKVTVGFGNKNFTSGTSLY 378 (382)
Q Consensus 359 ~~g~~~~~~~~~~~~g~~l~ 378 (382)
.... .++.++..+|+.+-
T Consensus 308 ~~~~--~V~~~~~~~G~~~~ 325 (400)
T 3p5b_L 308 IINE--AIFSANRLTGSDVN 325 (400)
T ss_dssp SSSC--SEEEEESSSCCCCE
T ss_pred CCCC--eEEEEEcCCCCceE
Confidence 6544 24556666676543
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.018 Score=58.94 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=14.4
Q ss_pred CcceEEEEECCCCcEEEEE
Q 040693 141 HSNSLLALDLDTGKIVWYK 159 (382)
Q Consensus 141 ~~g~v~ald~~tG~~~W~~ 159 (382)
....|+.+|.++|+.....
T Consensus 233 ~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 233 HHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp CEEEEEEEETTTTEEEECC
T ss_pred CeeEEEEEECCCCceEeec
Confidence 3478999999998876543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.017 Score=59.35 Aligned_cols=93 Identities=5% Similarity=-0.053 Sum_probs=49.2
Q ss_pred eEEEEECCC-CcEEeeecCCC-C-CCCCcceEEeCCEEEEeee---cCCCcEEEEeCCCCcEeEEEecCCc----eecce
Q 040693 278 GWVAMDASN-GNVLWSTADPS-N-GTAPGPVTVANGVLFGGST---YRQGPIYAMDVKTGKILWSYDTGAT----IYGGA 347 (382)
Q Consensus 278 ~v~a~d~~t-G~~~W~~~~~~-~-~~~~~~~~~~~~~v~~~~~---~~~g~l~~ld~~tG~ilw~~~~~~~----~~~~p 347 (382)
.|+.+|+.+ |+......... . ....... -++..+++... ..+..|+.+|.++|+..-....... ....+
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 342 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSL 342 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCC
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCce
Confidence 688999999 88765432211 0 0111122 34555555432 1245799999999987655443221 12344
Q ss_pred EE-eCCEEEEEeCceeEeecCCccC
Q 040693 348 SV-SNGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 348 ~~-~~g~lyv~~~~g~~~~~~~~~~ 371 (382)
.. .+|++++.+.......+|.++.
T Consensus 343 ~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 343 RFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp EECTTSCEEEEECTTSSCEEEEECS
T ss_pred EECCCCeEEEEecCCCccEEEEEcC
Confidence 44 3555555544333345565554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=97.34 E-value=0.031 Score=52.47 Aligned_cols=179 Identities=9% Similarity=-0.031 Sum_probs=94.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|..+++.+.+...... +.. +.+.++ +..+..+. ++.+..++
T Consensus 156 d~~i~iwd~~~~~~~~~~~~~~~-V~~---------------------------v~fspd---g~~l~s~s-~~~~~~~~ 203 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIETRGE-VKD---------------------------LHFSTD---GKVVAYIT-GSSLEVIS 203 (365)
T ss_dssp SCEEEEEETTTTEEEEEEECSSC-CCE---------------------------EEECTT---SSEEEEEC-SSCEEEEE
T ss_pred CCEEEEeECCCCcEEEEeCCCCc-eEE---------------------------EEEccC---CceEEecc-ceeEEEEE
Confidence 58899999999999988753321 110 111222 24455554 55578888
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee--ecCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS--TADPS 297 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~--~~~~~ 297 (382)
..+|+.+-....... ......... ++..+....... ...-.+..+|..+++..-. .....
T Consensus 204 ~~~~~~~~~~~~~~~---~~~v~~v~fspdg~~l~~~s~d~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~ 267 (365)
T 4h5i_A 204 TVTGSCIARKTDFDK---NWSLSKINFIADDTVLIAASLKK-------------GKGIVLTKISIKSGNTSVLRSKQVTN 267 (365)
T ss_dssp TTTCCEEEEECCCCT---TEEEEEEEEEETTEEEEEEEESS-------------SCCEEEEEEEEETTEEEEEEEEEEES
T ss_pred eccCcceeeeecCCC---CCCEEEEEEcCCCCEEEEEecCC-------------cceeEEeecccccceecceeeeeecC
Confidence 888887655432210 111112221 333343332210 1112466667666643221 11111
Q ss_pred CCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEE-eCCEEEEEeCceeEeecCCcc
Q 040693 298 NGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASV-SNGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 298 ~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~ 370 (382)
.......+.+ ++.++..++ .++.|..+|.++|+++.++..+. ....+... .+++++++.+....+.++.+-
T Consensus 268 ~~~~V~~~~~Spdg~~lasgs--~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 268 RFKGITSMDVDMKGELAVLAS--NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp SCSCEEEEEECTTSCEEEEEE--TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred CCCCeEeEEECCCCCceEEEc--CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence 1011122223 345666666 48999999999999998874432 22233333 477777776666667787763
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=97.29 E-value=0.015 Score=52.66 Aligned_cols=102 Identities=9% Similarity=0.181 Sum_probs=57.1
Q ss_pred EEEEE-ccCcEEEEEeCC-CCCee----eeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 207 IVVAV-QKSGFAWALDRD-SGSLI----WSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 207 ~v~~~-~~~g~l~ald~~-tG~~~----W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
.+++. ..++.++.+|.+ +|+.. +. .... .......+.+. .++.+|++.. ..+.|
T Consensus 189 ~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~--~~~~~p~~i~~d~~G~l~v~~~----------------~~~~i 249 (314)
T 1pjx_A 189 QLIVAETPTKKLWSYDIKGPAKIENKKVWG-HIPG--THEGGADGMDFDEDNNLLVANW----------------GSSHI 249 (314)
T ss_dssp EEEEEETTTTEEEEEEEEETTEEEEEEEEE-ECCC--CSSCEEEEEEEBTTCCEEEEEE----------------TTTEE
T ss_pred EEEEEECCCCeEEEEECCCCCccccceEEE-ECCC--CCCCCCCceEECCCCCEEEEEc----------------CCCEE
Confidence 45554 556789999876 56532 21 1110 00011122233 3567887632 24679
Q ss_pred EEEECCCCcEEeeecCCCCCCCCcceEEe-C-CEEEEeeecCCCcEEEEeCCC
Q 040693 280 VAMDASNGNVLWSTADPSNGTAPGPVTVA-N-GVLFGGSTYRQGPIYAMDVKT 330 (382)
Q Consensus 280 ~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~-~~v~~~~~~~~g~l~~ld~~t 330 (382)
..+|+++|+.+.....+.. ....+.+. + ..+|+++. .++.|+.|+++.
T Consensus 250 ~~~d~~~g~~~~~~~~~~~--~~~~i~~~~dg~~l~v~~~-~~~~l~~~~~~~ 299 (314)
T 1pjx_A 250 EVFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQR 299 (314)
T ss_dssp EEECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEET-TTTEEEEEECSS
T ss_pred EEEcCCCCcEeEEEeCCCC--CceeEEECCCCCEEEEEeC-CCCeEEEEeCCC
Confidence 9999998988776665431 12233332 3 45888773 346899998763
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0052 Score=63.93 Aligned_cols=147 Identities=11% Similarity=0.053 Sum_probs=74.6
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCC-CCCCCccccee-----------eeCCeEEEEecCccccccccCCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPG-GLGGGAMWGAA-----------TDERRIYTNIANSQHKNFNLKPSKN 272 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~g~~~~~~~-----------~~~~~v~~~~~~~~~~~~~~~~~~~ 272 (382)
+..+++++.++.+..+|..+++..-....... .......+.+. .++..++++
T Consensus 113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sg---------------- 176 (753)
T 3jro_A 113 GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG---------------- 176 (753)
T ss_dssp CSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEE----------------
T ss_pred CCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEE----------------
Confidence 46788889999999999988743322221110 00000111110 024455554
Q ss_pred CCCCceEEEEECCCCcEEeeecC--CCCCCCCcceEEe-----CCEEEEeeecCCCcEEEEeCCCCcEeEEEecC-----
Q 040693 273 STIAGGWVAMDASNGNVLWSTAD--PSNGTAPGPVTVA-----NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG----- 340 (382)
Q Consensus 273 ~~~~g~v~a~d~~tG~~~W~~~~--~~~~~~~~~~~~~-----~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~----- 340 (382)
..++.|..+|.++++..++... .........+.+. +..++.++ .+|.|..+|..+++..+.....
T Consensus 177 -s~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 253 (753)
T 3jro_A 177 -GADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVS--QDRTCIIWTQDNEQGPWKKTLLKEEKF 253 (753)
T ss_dssp -ETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--SSSCEEEEEESSSSSCCBCCBSSSSCC
T ss_pred -ECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEe--cCCEEEEecCCCCCCcceeEEeccCCC
Confidence 3458899999998865444321 1100111122222 23455555 4899999999887543332221
Q ss_pred CceecceEE-eCCEEEE-EeCceeEeecCCccC
Q 040693 341 ATIYGGASV-SNGCIYM-GNGYKVTVGFGNKNF 371 (382)
Q Consensus 341 ~~~~~~p~~-~~g~lyv-~~~~g~~~~~~~~~~ 371 (382)
.....+... .+++.++ ++.+|. +.+|.++.
T Consensus 254 ~~~v~~l~~spdg~~l~s~s~Dg~-I~vwd~~~ 285 (753)
T 3jro_A 254 PDVLWRASWSLSGNVLALSGGDNK-VTLWKENL 285 (753)
T ss_dssp SSCCCCEEECTTTCCEEEECSSSC-EECCBCCS
T ss_pred CCceEEEEEcCCCCEEEEEcCCCE-EEEEecCC
Confidence 111222222 3444444 445544 67777663
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.11 Score=47.15 Aligned_cols=128 Identities=16% Similarity=0.155 Sum_probs=72.6
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-.+.+ ........++.++.||+........ ......+..+|+++. .|+.-
T Consensus 124 ~~~~~~d~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~---------~~~~~~~~~yd~~~~--~W~~~ 188 (302)
T 2xn4_A 124 SSVEAYNIKSN--EWFHVAPMN--TRRSSVGVGVVGGLLYAVGGYDVAS---------RQCLSTVECYNATTN--EWTYI 188 (302)
T ss_dssp EEEEEEETTTT--EEEEECCCS--SCCBSCEEEEETTEEEEECCEETTT---------TEECCCEEEEETTTT--EEEEE
T ss_pred ceEEEEeCCCC--eEeecCCCC--CcccCceEEEECCEEEEEeCCCCCC---------CccccEEEEEeCCCC--cEEEC
Confidence 35889998865 577653322 1222333444678888864321100 011356999999877 46653
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeecC----CCcEEEEeCCCCcEeEEEec--CCc-eecceEEeCCEEEEEeCc
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTYR----QGPIYAMDVKTGKILWSYDT--GAT-IYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~~----~g~l~~ld~~tG~ilw~~~~--~~~-~~~~p~~~~g~lyv~~~~ 360 (382)
.+... ......+.++.+|+..... ...++.+|+++. .|+.-. +.. ...+.++.+++||+..+.
T Consensus 189 ~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~r~~~~~~~~~~~i~v~GG~ 260 (302)
T 2xn4_A 189 AEMSTRR-SGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN--AWRQVADMNMCRRNAGVCAVNGLLYVVGGD 260 (302)
T ss_dssp CCCSSCC-BSCEEEEETTEEEEECCBSSSSBCCCEEEEETTTT--EEEEECCCSSCCBSCEEEEETTEEEEECCB
T ss_pred CCCcccc-ccccEEEECCEEEEECCCCCCcccceEEEEeCCCC--CEeeCCCCCCccccCeEEEECCEEEEECCc
Confidence 33322 2334445577777754211 246999999876 465432 222 334456689999998764
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.049 Score=56.00 Aligned_cols=145 Identities=13% Similarity=0.078 Sum_probs=76.5
Q ss_pred CcEEEEEeCCC------CCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCC
Q 040693 214 SGFAWALDRDS------GSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNG 287 (382)
Q Consensus 214 ~g~l~ald~~t------G~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG 287 (382)
+..++.+|..+ |+..+..-.... . ........+++.+|+..... .....|+.+|+.++
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~--~-~~~~~~s~dg~~l~~~s~~~-------------~~~~~l~~~d~~~~ 321 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNF--E-GEYDYVTNEGTVFTFKTNRH-------------SPNYRLINIDFTDP 321 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSS--S-SCEEEEEEETTEEEEEECTT-------------CTTCEEEEEETTSC
T ss_pred ccEEEEEECcccccccCCccceEEeeCCC--C-cEEEEEeccCCEEEEEECCC-------------CCCCEEEEEeCCCC
Confidence 56899999887 643232211110 0 11111222677777764321 12467999999988
Q ss_pred cE-EeeecCCCCC-CCCcceEEe-CCEEEEeeecCCC--cEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEe-C
Q 040693 288 NV-LWSTADPSNG-TAPGPVTVA-NGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGN-G 359 (382)
Q Consensus 288 ~~-~W~~~~~~~~-~~~~~~~~~-~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~-~ 359 (382)
+. .|+.-.+... .....+... ++.+++... .++ +|+.+|.++|+.+.++..+.+....... .+..+++.. +
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~-~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss 400 (710)
T 2xdw_A 322 EESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTS 400 (710)
T ss_dssp CGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEEC
T ss_pred CcccceeccCCCCCCeEEEEEEEcCCEEEEEEE-ECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeC
Confidence 63 5665433311 011122233 555554432 244 6899999889987777665433333322 334666553 3
Q ss_pred ceeEeecCCccCCCCC
Q 040693 360 YKVTVGFGNKNFTSGT 375 (382)
Q Consensus 360 ~g~~~~~~~~~~~~g~ 375 (382)
...-..+|.+|..+|+
T Consensus 401 ~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 401 FLSPGIIYHCDLTKEE 416 (710)
T ss_dssp SSCCCEEEEEETTSSS
T ss_pred CCCCCEEEEEECCCCc
Confidence 3222345666777776
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.086 Score=49.01 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=59.1
Q ss_pred cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV 289 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~ 289 (382)
.+..|+.+|.++|+......... ....+.. ++..+++...... ......|+.+|+.+++.
T Consensus 166 ~~~~l~~~d~~~g~~~~~~~~~~------~~~~~~~sp~dg~~l~~~~~~~~-----------~~~~~~l~~~d~~~~~~ 228 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIHQDTA------WLGHPIYRPFDDSTVGFCHEGPH-----------DLVDARMWLVNEDGSNV 228 (396)
T ss_dssp CCEEEEEEETTTCCEEEEEEESS------CEEEEEEETTEEEEEEEEECSCS-----------SSCSCCCEEEETTSCCC
T ss_pred CcceEEEEECCCCcEEeeccCCc------ccccceECCCCCCEEEEEecCCC-----------CCCCceEEEEECCCCce
Confidence 45679999999988765443211 1112222 3343444321100 01125688999887764
Q ss_pred EeeecCCCCCCCCcceEE--eCCE-EEEeeecCC--CcEEEEeCCCCcEeEEEecCCceecceEE-e-CCEEEEE
Q 040693 290 LWSTADPSNGTAPGPVTV--ANGV-LFGGSTYRQ--GPIYAMDVKTGKILWSYDTGATIYGGASV-S-NGCIYMG 357 (382)
Q Consensus 290 ~W~~~~~~~~~~~~~~~~--~~~~-v~~~~~~~~--g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~-~g~lyv~ 357 (382)
.-... .........+.+ ++.. +|....... +.|+.+|+++|++.--...+. . . +.. . ++++++.
T Consensus 229 ~~l~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~-~-~-~~~s~~dg~~l~~ 299 (396)
T 3c5m_A 229 RKIKE-HAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMPP-C-S-HLMSNFDGSLMVG 299 (396)
T ss_dssp EESSC-CCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECCS-E-E-EEEECSSSSEEEE
T ss_pred eEeec-cCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCCC-C-C-CCccCCCCceEEE
Confidence 32222 110001111223 2343 444332112 349999999998654433332 2 2 433 3 6666654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.04 Score=50.35 Aligned_cols=146 Identities=12% Similarity=0.041 Sum_probs=73.0
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
+.|+.+|.++++..-...... .+.......+ .++.+|++..... .....+.|+.+|+++++..-..
T Consensus 112 ~~i~~~d~~~~~~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~~~----------~~~~~~~l~~~~~~~~~~~~~~ 178 (333)
T 2dg1_A 112 GGIFAATENGDNLQDIIEDLS---TAYCIDDMVFDSKGGFYFTDFRGY----------STNPLGGVYYVSPDFRTVTPII 178 (333)
T ss_dssp CEEEEECTTSCSCEEEECSSS---SCCCEEEEEECTTSCEEEEECCCB----------TTBCCEEEEEECTTSCCEEEEE
T ss_pred ceEEEEeCCCCEEEEEEccCc---cCCcccceEECCCCCEEEEecccc----------ccCCCceEEEEeCCCCEEEEee
Confidence 579999999887642222111 1112222233 3567777643210 0012467999998887654322
Q ss_pred cCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCC-CcEeEEE------ecCC-ceecceEE-eCCEEEEEeCcee
Q 040693 294 ADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKT-GKILWSY------DTGA-TIYGGASV-SNGCIYMGNGYKV 362 (382)
Q Consensus 294 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~t-G~ilw~~------~~~~-~~~~~p~~-~~g~lyv~~~~g~ 362 (382)
.... ....+.+. +..+|++.. .++.|+.+|.++ |+.+..+ .... .......+ .+|++|+++....
T Consensus 179 ~~~~---~~~~i~~~~dg~~l~v~~~-~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~ 254 (333)
T 2dg1_A 179 QNIS---VANGIALSTDEKVLWVTET-TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQG 254 (333)
T ss_dssp EEES---SEEEEEECTTSSEEEEEEG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTT
T ss_pred cCCC---cccceEECCCCCEEEEEeC-CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCC
Confidence 2111 11223332 346777653 367899999863 5544332 1111 11222333 3688999874322
Q ss_pred EeecCCccCCCCCeEEEE
Q 040693 363 TVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 363 ~~~~~~~~~~~g~~l~~~ 380 (382)
. ++.++. +|+.+..|
T Consensus 255 ~--v~~~d~-~g~~~~~~ 269 (333)
T 2dg1_A 255 R--VLVFNK-RGYPIGQI 269 (333)
T ss_dssp E--EEEECT-TSCEEEEE
T ss_pred E--EEEECC-CCCEEEEE
Confidence 1 233455 46665554
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=97.18 E-value=0.11 Score=47.83 Aligned_cols=102 Identities=9% Similarity=-0.053 Sum_probs=55.7
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
..++.+..|+.+..+| .+++.+..+..-. ........ ++..+..+ ..++.|..+|
T Consensus 185 ~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~-----~~v~~~~~s~~g~~l~sg-----------------s~dg~v~iwd 241 (343)
T 2xzm_R 185 PYFASVGWDGRLKVWN-TNFQIRYTFKAHE-----SNVNHLSISPNGKYIATG-----------------GKDKKLLIWD 241 (343)
T ss_dssp CEEEEEETTSEEEEEE-TTTEEEEEEECCS-----SCEEEEEECTTSSEEEEE-----------------ETTCEEEEEE
T ss_pred CEEEEEcCCCEEEEEc-CCCceeEEEcCcc-----ccceEEEECCCCCEEEEE-----------------cCCCeEEEEE
Confidence 5677888899999999 4466655554221 11222222 44555554 3458899999
Q ss_pred CC-CCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeE
Q 040693 284 AS-NGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILW 335 (382)
Q Consensus 284 ~~-tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw 335 (382)
+. .++..-...... ....+.+. ++.+++... ++.+..+|..+++.+-
T Consensus 242 ~~~~~~~~~~~~~~~---~v~~v~~sp~~~~la~~~--d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 242 ILNLTYPQREFDAGS---TINQIAFNPKLQWVAVGT--DQGVKIFNLMTQSKAP 290 (343)
T ss_dssp SSCCSSCSEEEECSS---CEEEEEECSSSCEEEEEE--SSCEEEEESSSCCSCS
T ss_pred CCCCcccceeecCCC---cEEEEEECCCCCEEEEEC--CCCEEEEEeCCCCCCc
Confidence 84 343333332221 11222232 333333333 7789999988876544
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.019 Score=57.58 Aligned_cols=92 Identities=9% Similarity=0.041 Sum_probs=55.1
Q ss_pred CcCCCCceeeeeecCcCccceeeeceE--EEcCEEEEeccCc-----cccccccccccccceEEEEeCccCceeeeeecc
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGT--YYKGAYYVGTSSI-----EEGLTFELCCTFQGSLAKLDAKTGRILWQTFML 74 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~--v~~~~v~v~~~~~-----~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~ 74 (382)
||+++.|.....+++... .....++. -..++||++.... +....+. +=.+++.+.++|.+|.+++|+..+.
T Consensus 117 Idl~t~~~~~ii~ip~g~-~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~-~~~~~~~vtvID~~t~~v~~qI~Vg 194 (595)
T 1fwx_A 117 VRCDVMKCDAILEIPNAK-GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED-VANYVNVFTAVDADKWEVAWQVLVS 194 (595)
T ss_dssp EETTTTEEEEEEECSSCC-SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC-GGGEEEEEEEEETTTTEEEEEEEES
T ss_pred EECCCceEeeEEeCCCCC-CCcceeeeecCCCcEEEEecccccccCCCCccccc-ccccCceEEEEECCCCeEEEEEEeC
Confidence 678888877755543211 11111221 2457888875221 1111111 1125789999999999999999985
Q ss_pred CCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCC
Q 040693 75 PDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGN 109 (382)
Q Consensus 75 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~ 109 (382)
.... ...+++++.++|+...+
T Consensus 195 g~pd--------------~~~~spdGk~~~vt~~~ 215 (595)
T 1fwx_A 195 GNLD--------------NCDADYEGKWAFSTSYN 215 (595)
T ss_dssp SCCC--------------CEEECSSSSEEEEEESC
T ss_pred CCcc--------------ceEECCCCCEEEEEecC
Confidence 3211 25677788899998865
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.053 Score=51.99 Aligned_cols=149 Identities=13% Similarity=0.211 Sum_probs=80.5
Q ss_pred ecEEEEEccCc--EEEEEeCCCCCeeeee-ccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 205 HDIVVAVQKSG--FAWALDRDSGSLIWSM-EAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 205 ~~~v~~~~~~g--~l~ald~~tG~~~W~~-~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
+..|++...++ .++.+|..++...-.. ..... ........++ +++.||+. ...+.|
T Consensus 182 g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~--~~~~p~~iav~p~~g~lyv~-----------------d~~~~I 242 (409)
T 3hrp_A 182 KQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGST--FSGKIGAVALDETEEWLYFV-----------------DSNKNF 242 (409)
T ss_dssp SSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTT--SCSCCCBCEECTTSSEEEEE-----------------CTTCEE
T ss_pred CCcEEEEecCCCceEEEEEcCCCceeEEeeeccch--hcCCcEEEEEeCCCCeEEEE-----------------ECCCcE
Confidence 35677776654 8999999877653332 11110 1112233333 36889985 335789
Q ss_pred EEEECCCCcEEeeec--CCCCCCCC-c-ceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecC-C-c---------
Q 040693 280 VAMDASNGNVLWSTA--DPSNGTAP-G-PVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG-A-T--------- 342 (382)
Q Consensus 280 ~a~d~~tG~~~W~~~--~~~~~~~~-~-~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~-~-~--------- 342 (382)
+.+|+.+++...... ........ . -+.++ ++.+|++.. ..+.|+.+|.+ |++....-.. . +
T Consensus 243 ~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~-~~~~I~~~~~~-g~~~~~~g~~~~~g~~dg~~~~~ 320 (409)
T 3hrp_A 243 GRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ-NLSSVYKITPD-GECEWFCGSATQKTVQDGLREEA 320 (409)
T ss_dssp EEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET-TTTEEEEECTT-CCEEEEEECTTCCSCBCEEGGGC
T ss_pred EEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC-CCCEEEEEecC-CCEEEEEeCCCCCCcCCCccccc
Confidence 999999887544311 11111112 1 34454 578998874 57889999976 5533222211 0 0
Q ss_pred eecce---EE-eCCEEEEEeC-ceeEeecCCccCCCCCe
Q 040693 343 IYGGA---SV-SNGCIYMGNG-YKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 343 ~~~~p---~~-~~g~lyv~~~-~g~~~~~~~~~~~~g~~ 376 (382)
.+..| ++ .+|+||++.. ....+ ..++..+|++
T Consensus 321 ~~~~P~gia~d~dG~lyvad~~~~~~I--~~~~~~~G~v 357 (409)
T 3hrp_A 321 LFAQPNGMTVDEDGNFYIVDGFKGYCL--RKLDILDGYV 357 (409)
T ss_dssp BCSSEEEEEECTTCCEEEEETTTTCEE--EEEETTTTEE
T ss_pred EeCCCeEEEEeCCCCEEEEeCCCCCEE--EEEECCCCEE
Confidence 01122 23 3678999987 44432 3345445553
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.093 Score=53.55 Aligned_cols=97 Identities=16% Similarity=0.050 Sum_probs=46.7
Q ss_pred CceEEEEECCCCcEEeeecCCC-CCCC---CcceEE-eCCEEEEe-eecCCC------cEEEEe-CCCCcE--eEEEecC
Q 040693 276 AGGWVAMDASNGNVLWSTADPS-NGTA---PGPVTV-ANGVLFGG-STYRQG------PIYAMD-VKTGKI--LWSYDTG 340 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~-~~~~---~~~~~~-~~~~v~~~-~~~~~g------~l~~ld-~~tG~i--lw~~~~~ 340 (382)
...|+.+|+++|+..-...... .... ..+... ++..+++. +. .++ .|+.+| .++++. .-+...+
T Consensus 279 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~ 357 (723)
T 1xfd_A 279 VSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAI-PQGGRGKFYHITVSSSQPNSSNDNIQSITSG 357 (723)
T ss_dssp EEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEE-CCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred eEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEec-ccCCCcceeEEEEEeccCCCCccceeEeecC
Confidence 3568999999998765443211 1111 122222 33434433 32 355 689999 555551 2122111
Q ss_pred C-ceecceEE--eCCEEEEEeCce--eEeecCCccCCC
Q 040693 341 A-TIYGGASV--SNGCIYMGNGYK--VTVGFGNKNFTS 373 (382)
Q Consensus 341 ~-~~~~~p~~--~~g~lyv~~~~g--~~~~~~~~~~~~ 373 (382)
. .....+.. .+..||+.+..+ ....+|.++..+
T Consensus 358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~ 395 (723)
T 1xfd_A 358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVG 395 (723)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSST
T ss_pred CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCC
Confidence 1 12222333 355676665543 335566665543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.12 Score=50.20 Aligned_cols=151 Identities=10% Similarity=-0.095 Sum_probs=78.5
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCC-----CCCceEEEEECCCCcE
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNS-----TIAGGWVAMDASNGNV 289 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----~~~g~v~a~d~~tG~~ 289 (382)
+.+..+|.+|++++=+.+.+.....-.......-+.+.+|++.... +-....+... ....+|+.+|..++++
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~---p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~ 240 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAV---PNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR 240 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCC---HHHHTTCCCTTTHHHHSCCEEEEEETTTTEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcC---ccccccccchhhhhhccCCEEEEEECCCCcE
Confidence 6899999999999877664421110011111111566666652110 0000000000 2357899999999999
Q ss_pred EeeecCCCCCCCCcce--EE----eCCEEEEeee----cCCCcEEEEeCCCCcEeEEEe--cCC----------------
Q 040693 290 LWSTADPSNGTAPGPV--TV----ANGVLFGGST----YRQGPIYAMDVKTGKILWSYD--TGA---------------- 341 (382)
Q Consensus 290 ~W~~~~~~~~~~~~~~--~~----~~~~v~~~~~----~~~g~l~~ld~~tG~ilw~~~--~~~---------------- 341 (382)
+-+++.+.. ...|. .+ ++..+|+... ..++.|+.+..+.|+..-... ++.
T Consensus 241 ~~tI~vg~~--g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~ 318 (462)
T 2ece_A 241 IHSLTLGEE--NRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKA 318 (462)
T ss_dssp EEEEESCTT--EEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTE
T ss_pred eeEEecCCC--CCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccccccc
Confidence 888887531 12222 11 2457777652 025677766555443211111 111
Q ss_pred --ceecceEE--eCCEEEEEeCceeEeecCCcc
Q 040693 342 --TIYGGASV--SNGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 342 --~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~ 370 (382)
...+...+ .+..|||++.....+.+|.++
T Consensus 319 ~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~ 351 (462)
T 2ece_A 319 VPPLVTDIDISLDDKFLYLSLWGIGEVRQYDIS 351 (462)
T ss_dssp ECCCCCCEEECTTSCEEEEEETTTTEEEEEECS
T ss_pred CCCceeEEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 11111222 567899998876667777764
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.17 Score=47.01 Aligned_cols=147 Identities=14% Similarity=0.141 Sum_probs=74.7
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..+..+|..+. .|+.-.+.+ .......+.++.++.||+..+.... ......++.+|...-+..|+.-
T Consensus 168 ~~v~~yd~~~~--~W~~~~~~p-~~~~~~~~~~~~~~~iyv~GG~~~~----------~~~~~~v~~~d~d~~~~~W~~~ 234 (357)
T 2uvk_A 168 KFLLSFDPSTQ--QWSYAGESP-WYGTAGAAVVNKGDKTWLINGEAKP----------GLRTDAVFELDFTGNNLKWNKL 234 (357)
T ss_dssp CEEEEEETTTT--EEEEEEECS-SCCCBSCEEEEETTEEEEECCEEET----------TEECCCEEEEECC---CEEEEC
T ss_pred ccEEEEeCCCC--cEEECCCCC-CCCcccccEEEECCEEEEEeeecCC----------CcccCceEEEEecCCCCcEEec
Confidence 47999999865 677653221 1111113344467888876432110 0123568889885556679864
Q ss_pred CCC--CC-CCCcceEEeCCEEEEeeec-CC--------------------CcEEEEeCCCCcEeEEE--ecCCc-eecce
Q 040693 295 DPS--NG-TAPGPVTVANGVLFGGSTY-RQ--------------------GPIYAMDVKTGKILWSY--DTGAT-IYGGA 347 (382)
Q Consensus 295 ~~~--~~-~~~~~~~~~~~~v~~~~~~-~~--------------------g~l~~ld~~tG~ilw~~--~~~~~-~~~~p 347 (382)
... +. .......+.++.+|+.... .. ..++++|+++. .|+. +++.+ ...+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~ 312 (357)
T 2uvk_A 235 APVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG--KWDKSGELSQGRAYGVS 312 (357)
T ss_dssp CCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSCCBSSEE
T ss_pred CCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC--ceeeCCCCCCCccccee
Confidence 322 11 1122345567777765420 01 25789998855 4654 23332 23445
Q ss_pred EEeCCEEEEEeCcee----EeecCCccCCCCCe
Q 040693 348 SVSNGCIYMGNGYKV----TVGFGNKNFTSGTS 376 (382)
Q Consensus 348 ~~~~g~lyv~~~~g~----~~~~~~~~~~~g~~ 376 (382)
++.+++|||..+... .-.++.++.++++.
T Consensus 313 ~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~ 345 (357)
T 2uvk_A 313 LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKV 345 (357)
T ss_dssp EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSC
T ss_pred EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEe
Confidence 668999999866321 23344444444544
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.049 Score=51.76 Aligned_cols=110 Identities=12% Similarity=-0.012 Sum_probs=65.7
Q ss_pred cEEEEEccCcEEEEEeCCCCCe----eeeeccCCCCCCC-------Ccccceee--eCCeEEEEecCccccccccCCCCC
Q 040693 206 DIVVAVQKSGFAWALDRDSGSL----IWSMEAGPGGLGG-------GAMWGAAT--DERRIYTNIANSQHKNFNLKPSKN 272 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~----~W~~~~~~~~~~g-------~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~ 272 (382)
..++++..++.+..+|..+++. +..+......... ........ ++..++.+
T Consensus 240 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~---------------- 303 (447)
T 3dw8_B 240 NTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTR---------------- 303 (447)
T ss_dssp TEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEE----------------
T ss_pred cEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEe----------------
Confidence 6888999999999999999986 4444432110000 01111222 34444443
Q ss_pred CCCCceEEEEECCC-CcEEeeecCCCCCCC-------------CcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeE
Q 040693 273 STIAGGWVAMDASN-GNVLWSTADPSNGTA-------------PGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILW 335 (382)
Q Consensus 273 ~~~~g~v~a~d~~t-G~~~W~~~~~~~~~~-------------~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw 335 (382)
.. +.|..+|.++ ++.+-+......... ...+.+ ++.+++.++ .++.|+.+|.++++.+.
T Consensus 304 -~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s--~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 304 -DY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS--YNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp -ES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC--STTEEEEEETTTCCEEE
T ss_pred -eC-CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec--cCCEEEEEEcCCCccee
Confidence 33 7899999997 877666654321100 001333 245666666 49999999999998863
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.064 Score=55.59 Aligned_cols=154 Identities=12% Similarity=0.126 Sum_probs=80.2
Q ss_pred EEEeeeCceeecEEEEEccCcEEEEEeCCCC-----C-ee--eeeccCCCCCCCCcccceee-eCCeEEE--EecCcccc
Q 040693 195 MLSMYRNKVKHDIVVAVQKSGFAWALDRDSG-----S-LI--WSMEAGPGGLGGGAMWGAAT-DERRIYT--NIANSQHK 263 (382)
Q Consensus 195 ~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG-----~-~~--W~~~~~~~~~~g~~~~~~~~-~~~~v~~--~~~~~~~~ 263 (382)
+..+..+. ++.|++++..+-|+.+|..+. + .. ..+.... ............ .++.+++ +
T Consensus 421 v~~i~~d~--~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~i~~i~~d~~g~lWi~~~------- 490 (758)
T 3ott_A 421 TYYIFEDT--AGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHN-GLSGMFINQIIPDNEGNVWVLLY------- 490 (758)
T ss_dssp EEEEEECT--TSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGG-TCSCSCEEEEEECTTSCEEEEET-------
T ss_pred EEEEEEcC--CCCEEEEECCCceEEEccccccccCCcceeccccccccc-ccccceeeeEEEcCCCCEEEEcc-------
Confidence 34443333 578999987656999997631 1 11 1221110 011111222222 3466776 3
Q ss_pred ccccCCCCCCCCCceEEEEECCCCcEEeeecCCCC-CCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEE-E-ec
Q 040693 264 NFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSN-GTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWS-Y-DT 339 (382)
Q Consensus 264 ~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~-~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~-~-~~ 339 (382)
+ .+.|..+|+++++..--...... ......+..+ ++.+|+++ .+.|+.+|+++++...- . .+
T Consensus 491 ----------t-~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWigt---~~Gl~~~~~~~~~~~~~~~~gl 556 (758)
T 3ott_A 491 ----------N-NKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVGF---HGGVMRINPKDESQQSISFGSF 556 (758)
T ss_dssp ----------T-CSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEEE---TTEEEEECC--CCCCBCCCCC-
T ss_pred ----------C-CCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEEe---cCceEEEecCCCceEEecccCC
Confidence 2 24599999998876532211110 0111223333 57899988 46799999987765321 0 11
Q ss_pred CCceecceEEeCCEEEEEeCceeEeecCCccCCCCCe
Q 040693 340 GATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 340 ~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~ 376 (382)
+.....+.+..+|+|++++..|- +.+++.+.+.
T Consensus 557 ~~~~i~~i~~~~g~lWi~t~~Gl----~~~~~~~~~~ 589 (758)
T 3ott_A 557 SNNEILSMTCVKNSIWVSTTNGL----WIIDRKTMDA 589 (758)
T ss_dssp --CCEEEEEEETTEEEEEESSCE----EEEETTTCCE
T ss_pred CccceEEEEECCCCEEEECCCCe----EEEcCCCcee
Confidence 22223344457899999997754 5566666543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.049 Score=57.91 Aligned_cols=143 Identities=10% Similarity=-0.005 Sum_probs=83.4
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|...|..+|+.+-.+..... +. -+.+..+ +..++++..+|.+..+|
T Consensus 78 D~~v~lWd~~~~~~~~~~~~~~~-V~---------------------------~v~~sp~---g~~l~sgs~dg~V~lwd 126 (902)
T 2oaj_A 78 KDTVYVLSLYSQKVLTTVFVPGK-IT---------------------------SIDTDAS---LDWMLIGLQNGSMIVYD 126 (902)
T ss_dssp TCEEEEEETTTCSEEEEEECSSC-EE---------------------------EEECCTT---CSEEEEEETTSCEEEEE
T ss_pred cCeEEEEECCCCcEEEEEcCCCC-EE---------------------------EEEECCC---CCEEEEEcCCCcEEEEE
Confidence 38999999999999877752211 11 1111112 46788899999999999
Q ss_pred CCCCCee-------eeeccCCCCCCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 222 RDSGSLI-------WSMEAGPGGLGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 222 ~~tG~~~-------W~~~~~~~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
..+++.. |....... ........... +.+.+.++ ..++.+ .+|.++++.+-
T Consensus 127 ~~~~~~~~~~i~~~~~~~~~~~-~h~~~V~sl~~sp~~~~~l~~g-----------------~~dg~v-lWd~~~~~~~~ 187 (902)
T 2oaj_A 127 IDRDQLSSFKLDNLQKSSFFPA-ARLSPIVSIQWNPRDIGTVLIS-----------------YEYVTL-TYSLVENEIKQ 187 (902)
T ss_dssp TTTTEEEEEEECCHHHHHTCSS-SCCCCCCEEEEETTEEEEEEEE-----------------CSSCEE-EEETTTTEEEE
T ss_pred CCCCccccceeccccccccccc-cCCCCeEEEEEccCCCCEEEEE-----------------eCCCcE-EEECCCCceEE
Confidence 9998764 11100000 01112222222 22345544 345788 99999998876
Q ss_pred eecCCCC---C-------------CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEE
Q 040693 292 STADPSN---G-------------TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWS 336 (382)
Q Consensus 292 ~~~~~~~---~-------------~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~ 336 (382)
+...... . .....+.+ ++.++..++ .++.|...|.++|+.+-.
T Consensus 188 ~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs--~Dg~i~lWd~~~g~~~~~ 248 (902)
T 2oaj_A 188 SFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH--EDNSLVFWDANSGHMIMA 248 (902)
T ss_dssp EECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE--TTCCEEEEETTTCCEEEE
T ss_pred EEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEE--CCCeEEEEECCCCcEEEE
Confidence 6653300 0 00112222 234555555 599999999999998754
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.19 Score=52.55 Aligned_cols=145 Identities=12% Similarity=0.026 Sum_probs=79.3
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+.++....+.|..++.+ |+.+-..-... .....+.++ ..+.||++... ..+.|..++
T Consensus 484 ~LY~tD~~~~~I~v~~ld-G~~~~~l~~~~----l~~P~gIaVDp~~g~LYwtD~g---------------~~~~I~~~~ 543 (791)
T 3m0c_C 484 NIYWTDSVLGTVSVADTK-GVKRKTLFREN----GSKPRAIVVDPVHGFMYWTDWG---------------TPAKIKKGG 543 (791)
T ss_dssp EEEEEETTTTEEEEEETT-SSSEEEEEECT----TCCEEEEEEETTTTEEEEEECS---------------SSCEEEEEE
T ss_pred cEEEEecCCCeEEEEeCC-CCeEEEEEeCC----CCCcceEEEecCCCCEEEecCC---------------CCCeEEEEe
Confidence 344444556788888876 44332221110 112234445 36889987432 125688888
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee---cceEEeCCEEEEEe
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY---GGASVSNGCIYMGN 358 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~---~~p~~~~g~lyv~~ 358 (382)
.......-...... .....++++ +++||++.. ..+.|..+|++ |+.+..+-.....+ .+..+.+++||++.
T Consensus 544 ~dG~~~~~lv~~~l--~~P~GLavD~~~~~LYwaD~-~~~~I~~~d~d-G~~~~~v~~~~~~l~~P~glav~~~~lYwtD 619 (791)
T 3m0c_C 544 LNGVDIYSLVTENI--QWPNGITLDLLSGRLYWVDS-KLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 619 (791)
T ss_dssp TTSCCEEEEECSSC--SCEEEEEEETTTTEEEEEET-TTTEEEEEETT-SCSCEEEEECTTTTSSEEEEEEETTEEEEEE
T ss_pred cCCCceEEEEeCCC--CCceEEEEecCCCeEEEEeC-CCCcEEEEecC-CCceEEEecCCCccCCCCEEEEeCCEEEEEE
Confidence 75443322222211 123345555 689999874 56789999986 55444443221112 24456899999998
Q ss_pred CceeEeecCCccCCCCCe
Q 040693 359 GYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 359 ~~g~~~~~~~~~~~~g~~ 376 (382)
..... ++.++..+|+.
T Consensus 620 ~~~~~--I~~~dk~tG~~ 635 (791)
T 3m0c_C 620 IINEA--IFSANRLTGSD 635 (791)
T ss_dssp TTTTE--EEEEETTTCCC
T ss_pred CCCCE--EEEEeCCCCcc
Confidence 75442 34455555643
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=97.04 E-value=0.061 Score=51.47 Aligned_cols=146 Identities=10% Similarity=0.025 Sum_probs=78.9
Q ss_pred cEEEEEccCcEEEEEeCCCCCee-eeeccCCCC-CCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLI-WSMEAGPGG-LGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~-W~~~~~~~~-~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
..++++..+|.+..+|..+++.. +........ ........... +++.++++. ..++.|..
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~----------------~~dg~i~i 258 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSV----------------ADDQKLMI 258 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEE----------------ETTSEEEE
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEE----------------eCCCeEEE
Confidence 48888999999999999885432 221110000 00111222222 234444432 34588999
Q ss_pred EECCCC---cEEeeecCCCCCCCCcceEEe--CC-EEEEeeecCCCcEEEEeCCC-CcEeEEEecCCceecceEEe--CC
Q 040693 282 MDASNG---NVLWSTADPSNGTAPGPVTVA--NG-VLFGGSTYRQGPIYAMDVKT-GKILWSYDTGATIYGGASVS--NG 352 (382)
Q Consensus 282 ~d~~tG---~~~W~~~~~~~~~~~~~~~~~--~~-~v~~~~~~~~g~l~~ld~~t-G~ilw~~~~~~~~~~~p~~~--~g 352 (382)
+|.+++ +.......... ....+.+. +. +++.++ .++.|..+|..+ ++.+..+........+.... +.
T Consensus 259 ~d~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 259 WDTRNNNTSKPSHTVDAHTA--EVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNE 334 (430)
T ss_dssp EETTCSCSSSCSEEEECCSS--CEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCT
T ss_pred EECCCCCCCcceeEeecCCC--CeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCC
Confidence 999988 56666643321 11222232 33 455555 489999999987 56666665433333333332 33
Q ss_pred EEEEEeCceeEeecCCccC
Q 040693 353 CIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~ 371 (382)
.++++.+....+.+|.+..
T Consensus 335 ~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 335 TILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp TEEEEEETTSCCEEEEGGG
T ss_pred CEEEEEeCCCcEEEEeCCC
Confidence 4555554434466676655
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.036 Score=53.14 Aligned_cols=122 Identities=8% Similarity=-0.044 Sum_probs=62.2
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC-CCccccee--eeCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG-GGAMWGAA--TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-g~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
+..|++++.|+.+..+|..+++..-.......... ........ ..+..+.++... +....... ....+.|..
T Consensus 308 g~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~----~~~~~~i~i 382 (435)
T 4e54_B 308 GARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYP-DPNFKSCT----PYELRTIDV 382 (435)
T ss_dssp SSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCC-CTTSCCSS----TTCCCCEEE
T ss_pred CCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcC-CCCeEEEE----ecCCCEEEE
Confidence 46788889999999999999987665543211000 00000111 133444443221 11111111 122356899
Q ss_pred EECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcE
Q 040693 282 MDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKI 333 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~i 333 (382)
+|..+|+.+.+...+..........+ .++.++++.. ++.|...|+++|+.
T Consensus 383 wd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~--d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 383 FDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM--GYHILIWSQQEART 433 (435)
T ss_dssp ECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC--SSEEEECCCC----
T ss_pred EECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc--CCcEEEEECCcCee
Confidence 99999999887654332111221122 2444444443 77898889888875
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.027 Score=49.68 Aligned_cols=131 Identities=15% Similarity=0.075 Sum_probs=71.5
Q ss_pred EEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee-CCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 207 IVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD-ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 207 ~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
.+++...++.++.+|.+++ ..+.+.... .....+.+++ ++.+|++.. ..+.|..+|..
T Consensus 79 ~l~v~~~~~~i~~~d~~~~-~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~----------------~~~~i~~~~~~ 137 (270)
T 1rwi_B 79 TVYVTDFNNRVVTLAAGSN-NQTVLPFDG----LNYPEGLAVDTQGAVYVADR----------------GNNRVVKLAAG 137 (270)
T ss_dssp CEEEEETTTEEEEECTTCS-CCEECCCCS----CSSEEEEEECTTCCEEEEEG----------------GGTEEEEECTT
T ss_pred CEEEEcCCCEEEEEeCCCc-eEeeeecCC----cCCCcceEECCCCCEEEEEC----------------CCCEEEEEECC
Confidence 3655555788999998754 444433211 0122333333 567888632 23678889876
Q ss_pred CCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCce
Q 040693 286 NGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYK 361 (382)
Q Consensus 286 tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g 361 (382)
+.+......... .....+.++ ++.+|++.. ..+.|+.+|.++++...............++ .+|+||+++...
T Consensus 138 ~~~~~~~~~~~~--~~p~~i~~~~~g~l~v~~~-~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~ 212 (270)
T 1rwi_B 138 SKTQTVLPFTGL--NDPDGVAVDNSGNVYVTDT-DNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNT 212 (270)
T ss_dssp CCSCEECCCCSC--CSCCCEEECTTCCEEEEEG-GGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred CceeEeeccccC--CCceeEEEeCCCCEEEEEC-CCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCC
Confidence 665543322111 122334454 467888763 3578999998876654322111111223334 356999988643
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.017 Score=52.76 Aligned_cols=161 Identities=12% Similarity=0.046 Sum_probs=75.8
Q ss_pred EEEE-ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCcccc-ccccCCCCCCCCCceEEEEEC
Q 040693 208 VVAV-QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHK-NFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 208 v~~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~~~~~g~v~a~d~ 284 (382)
++++ ..++.|+.+|.+ |+...-...... .........++ .++.+|++....... .+...........+.|+.+|+
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~-~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAG-KRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECEETT-EECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEeccCC-CccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 4444 445679999986 775433221110 00001111222 366788752210000 000000001122467999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecC-----CCcEEEEeCCCCcEeEEEe----cCCceecceEE-eCC
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYR-----QGPIYAMDVKTGKILWSYD----TGATIYGGASV-SNG 352 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~-----~g~l~~ld~~tG~ilw~~~----~~~~~~~~p~~-~~g 352 (382)
++|+..-...... ...+.+. +..+|++.. . .+.|+.+|.+.+. +-... ..........+ .+|
T Consensus 177 ~~g~~~~~~~~~~----p~gl~~spdg~~lyv~~~-~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 177 DGSPLQRMADLDH----PNGLAFSPDEQTLYVSQT-PEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGG 250 (305)
T ss_dssp SSCCCEEEEEESS----EEEEEECTTSSEEEEEEC-CC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTS
T ss_pred CCCcEEEEecCCC----CcceEEcCCCCEEEEEec-CCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCC
Confidence 9997653322111 1122332 346888764 2 2689999887554 22111 11111123333 468
Q ss_pred EEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 353 CIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
+||+++..| ++.+++ .|+.+-.+.
T Consensus 251 ~lwv~~~~g----v~~~~~-~g~~~~~~~ 274 (305)
T 3dr2_A 251 WLWSSSGTG----VCVFDS-DGQLLGHIP 274 (305)
T ss_dssp CEEECCSSE----EEEECT-TSCEEEEEE
T ss_pred CEEEecCCc----EEEECC-CCCEEEEEE
Confidence 899988554 344555 566665553
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.061 Score=50.43 Aligned_cols=52 Identities=12% Similarity=-0.032 Sum_probs=33.9
Q ss_pred CCCceEEEEECCCCcEEeeec-CCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCC
Q 040693 274 TIAGGWVAMDASNGNVLWSTA-DPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVK 329 (382)
Q Consensus 274 ~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~ 329 (382)
..++.|..+|.++|+++-++. .... ....+.+ ++.++..++ .++.|..+|..
T Consensus 288 s~D~~V~iwd~~~~~~~~~~~~gH~~--~V~~v~fSpdg~~laS~S--~D~tvrvw~ip 342 (365)
T 4h5i_A 288 SNDNSIALVKLKDLSMSKIFKQAHSF--AITEVTISPDSTYVASVS--AANTIHIIKLP 342 (365)
T ss_dssp ETTSCEEEEETTTTEEEEEETTSSSS--CEEEEEECTTSCEEEEEE--TTSEEEEEECC
T ss_pred cCCCEEEEEECCCCcEEEEecCcccC--CEEEEEECCCCCEEEEEe--CCCeEEEEEcC
Confidence 345889999999999988764 2221 1222333 234555555 48999999874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.089 Score=53.92 Aligned_cols=134 Identities=6% Similarity=-0.009 Sum_probs=69.0
Q ss_pred EEEEEeCCCCC----eeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE
Q 040693 216 FAWALDRDSGS----LIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV 289 (382)
Q Consensus 216 ~l~ald~~tG~----~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~ 289 (382)
.|+.++..|++ ++......+ .....+.. ++..|++..... .....|+.+|..+|+.
T Consensus 203 ~v~~~~l~t~~~~~~lv~~~~~~~-----~~~~~~~~SpDG~~l~~~~~~~-------------~~~~~l~~~~~~~~~~ 264 (695)
T 2bkl_A 203 TIRYHTLGTEPSKDTVVHERTGDP-----TTFLQSDLSRDGKYLFVYILRG-------------WSENDVYWKRPGEKDF 264 (695)
T ss_dssp EEEEEETTSCGGGCEEEECCCCCT-----TCEEEEEECTTSCCEEEEEEET-------------TTEEEEEEECTTCSSC
T ss_pred EEEEEECCCCchhceEEEecCCCC-----EEEEEEEECCCCCEEEEEEeCC-------------CCceEEEEEcCCCCce
Confidence 48889988886 333322111 11222222 555566553321 0224688888777754
Q ss_pred EeeecCCCCCCCCcceEEeCCEEEEeeec--CCCcEEEEeCCCCcE-eEEEecCC---ceecceEEeCCEEEEEeCceeE
Q 040693 290 LWSTADPSNGTAPGPVTVANGVLFGGSTY--RQGPIYAMDVKTGKI-LWSYDTGA---TIYGGASVSNGCIYMGNGYKVT 363 (382)
Q Consensus 290 ~W~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~g~l~~ld~~tG~i-lw~~~~~~---~~~~~p~~~~g~lyv~~~~g~~ 363 (382)
.--..... ....++..+++ +|+.+.. .++.|+.+|.++++. .|+.-++. .....+.+.+++|++....+..
T Consensus 265 ~~l~~~~~--~~~~~~~~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~dg~ 341 (695)
T 2bkl_A 265 RLLVKGVG--AKYEVHAWKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKDAT 341 (695)
T ss_dssp EEEEECSS--CCEEEEEETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEETTE
T ss_pred EEeecCCC--ceEEEEecCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEECCE
Confidence 43332221 12233333445 6666531 247899999988763 34443322 2344555568888877654444
Q ss_pred eecCCcc
Q 040693 364 VGFGNKN 370 (382)
Q Consensus 364 ~~~~~~~ 370 (382)
..++.++
T Consensus 342 ~~l~~~~ 348 (695)
T 2bkl_A 342 SEVRVAT 348 (695)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 4444444
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.23 Score=45.99 Aligned_cols=123 Identities=14% Similarity=0.001 Sum_probs=55.2
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccc---cccCCC--CC-CCCCceEEEEECCCCc
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKN---FNLKPS--KN-STIAGGWVAMDASNGN 288 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~--~~-~~~~g~v~a~d~~tG~ 288 (382)
..++++|.+.-+..|+.-...+..........++.++.||+......... +..... .. ......+..+|+++.
T Consensus 217 ~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~- 295 (357)
T 2uvk_A 217 DAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNG- 295 (357)
T ss_dssp CCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---
T ss_pred CceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCC-
Confidence 45888887555677987543211111112223446778887643211000 000000 00 001135789999866
Q ss_pred EEeee--cCCCCCCCCcceEEeCCEEEEeee-cCC----CcEEEEeCCCCcEeEEEecC
Q 040693 289 VLWST--ADPSNGTAPGPVTVANGVLFGGST-YRQ----GPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 289 ~~W~~--~~~~~~~~~~~~~~~~~~v~~~~~-~~~----g~l~~ld~~tG~ilw~~~~~ 340 (382)
.|+. +++..+.. ......++.+|+... ..+ ..++.|+.+++|.+-..+.+
T Consensus 296 -~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 296 -KWDKSGELSQGRAY-GVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp --CEEEEECSSCCBS-SEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred -ceeeCCCCCCCccc-ceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 4664 34443332 333445665555432 111 35888899988877665544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.16 Score=47.87 Aligned_cols=61 Identities=8% Similarity=0.013 Sum_probs=37.3
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceE-EEeeeCceeecEEEEEccCcEEEEE
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM-LSMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
++.|...|..+++.+-....... ++. +...+++ ...++++..|+.+..+
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~----------------------------~v~~v~~~p~~--~~~l~~~~~d~~v~~w 214 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSS----------------------------PGISVQFRPSN--PNQLIVGERNGNIRIF 214 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSS----------------------------CEEEEEEETTE--EEEEEEEETTSEEEEE
T ss_pred CCeEEEEECCCCceeeeecCCCC----------------------------CcEEEEECCCC--CceEEecCCCCEEEEE
Confidence 48899999888877655543322 222 1222333 4578889999999999
Q ss_pred eCCCCCeeeeec
Q 040693 221 DRDSGSLIWSME 232 (382)
Q Consensus 221 d~~tG~~~W~~~ 232 (382)
|..+++......
T Consensus 215 d~~t~~~~~~~~ 226 (393)
T 4gq1_A 215 DWTLNLSAEENS 226 (393)
T ss_dssp ETTCCC------
T ss_pred ECCCCccccccc
Confidence 999998765543
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.095 Score=48.59 Aligned_cols=56 Identities=9% Similarity=0.146 Sum_probs=34.6
Q ss_pred eEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEE-eCCEEEEEeCce
Q 040693 305 VTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASV-SNGCIYMGNGYK 361 (382)
Q Consensus 305 ~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~-~~g~lyv~~~~g 361 (382)
+.++ ++.+|++.. ..+.|.++|+++|++.-....+. ..-.+.++ .+++||+++...
T Consensus 253 ia~d~~G~l~va~~-~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~ 311 (343)
T 2qe8_A 253 ISIDKDHNIYVGDL-AHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQL 311 (343)
T ss_dssp EEECTTCCEEEEEG-GGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCG
T ss_pred EEECCCCCEEEEcc-CCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcc
Confidence 4444 577888764 57889999996787543332221 11233444 478999987643
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.075 Score=49.47 Aligned_cols=145 Identities=8% Similarity=-0.003 Sum_probs=81.0
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
.+++++..++.+..+|..+|+.+-.++... .........+.+++. .++.+..+|..
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~------~v~~v~~~~~~~~~~------------------~~~~i~i~d~~ 127 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRIKVDA------PVKDLFLSREFIVVS------------------YGDVISVFKFG 127 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEEECSS------CEEEEEECSSEEEEE------------------ETTEEEEEESS
T ss_pred EEEEEECCccEEEEEECCCCcEEEEEECCC------ceEEEEEcCCEEEEE------------------EcCEEEEEECC
Confidence 344667778899999999999988877432 222223344445443 23678999999
Q ss_pred CC-cEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcE----------------eEEEecCCceecceE
Q 040693 286 NG-NVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKI----------------LWSYDTGATIYGGAS 348 (382)
Q Consensus 286 tG-~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~i----------------lw~~~~~~~~~~~p~ 348 (382)
++ +.+.+...+ .....+....+.+++...+|.|..+|..+++. +-.+...........
T Consensus 128 ~~~~~~~~~~~~-----~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~ 202 (355)
T 3vu4_A 128 NPWKRITDDIRF-----GGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVR 202 (355)
T ss_dssp TTCCBSSCCEEE-----EEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEE
T ss_pred CCceeeEEeccC-----CceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEE
Confidence 88 666554431 11122223544443122589999999998761 333332222222222
Q ss_pred E-eCCEEEEE-eCceeEeecCCccCCCCCeEEEEE
Q 040693 349 V-SNGCIYMG-NGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 349 ~-~~g~lyv~-~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
+ .+++++++ +.+|..+.+|.+ .+|+.+..|.
T Consensus 203 ~s~~g~~l~s~s~d~~~v~iwd~--~~~~~~~~~~ 235 (355)
T 3vu4_A 203 LNRKSDMVATCSQDGTIIRVFKT--EDGVLVREFR 235 (355)
T ss_dssp ECTTSSEEEEEETTCSEEEEEET--TTCCEEEEEE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEC--CCCcEEEEEE
Confidence 3 35555554 445433666654 4588777664
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.32 Score=46.04 Aligned_cols=111 Identities=15% Similarity=-0.061 Sum_probs=62.0
Q ss_pred cEEEEEc-cC-cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 206 DIVVAVQ-KS-GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 206 ~~v~~~~-~~-g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
+.||+.. .. +.|+.++.+ |+.+-..-... .....+.++ +++.||++.. ..+.|..
T Consensus 214 g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~----~~~PnGlavd~~~~~lY~aD~----------------~~~~I~~ 272 (386)
T 3v65_B 214 GTIYWTDWGNTPRIEASSMD-GSGRRIIADTH----LFWPNGLTIDYAGRRMYWVDA----------------KHHVIER 272 (386)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCSCEEEECSS----CSCEEEEEEEGGGTEEEEEET----------------TTTEEEE
T ss_pred CeEEEeccCCCCEEEEEeCC-CCCcEEEEECC----CCCeeeEEEeCCCCEEEEEEC----------------CCCEEEE
Confidence 4444443 33 567777765 43332221110 011223444 4788998742 3467999
Q ss_pred EECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 282 MDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
+|.......--..... .....+.+.++.+|++.. ..+.|..+|..+|+.+-.+..+
T Consensus 273 ~d~dG~~~~~~~~~~~--~~P~giav~~~~ly~td~-~~~~V~~~~~~~G~~~~~i~~~ 328 (386)
T 3v65_B 273 ANLDGSHRKAVISQGL--PHPFAITVFEDSLYWTDW-HTKSINSANKFTGKNQEIIRNK 328 (386)
T ss_dssp ECTTSCSCEEEECSSC--SSEEEEEEETTEEEEEET-TTTEEEEEETTTCCSCEEEECS
T ss_pred EeCCCCeeEEEEECCC--CCceEEEEECCEEEEeeC-CCCeEEEEECCCCcceEEEccC
Confidence 9976433222222111 122334557888998874 6789999998889887766543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.87 E-value=0.28 Score=45.26 Aligned_cols=145 Identities=9% Similarity=-0.079 Sum_probs=76.4
Q ss_pred cEEEE-EccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVVA-VQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~~-~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+.||+ ....+.+..++.+......-.... .....+.++ .++.+|++... ..+.|..+
T Consensus 91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~-----~~~P~giavdp~~g~ly~td~~---------------~~~~I~r~ 150 (318)
T 3sov_A 91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQE-----LDQPRAIALDPSSGFMYWTDWG---------------EVPKIERA 150 (318)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSS-----CSSEEEEEEEGGGTEEEEEECS---------------SSCEEEEE
T ss_pred CeEEEEECCCCEEEEEECCCCcEEEEEeCC-----CCCccEEEEeCCCCEEEEEecC---------------CCCEEEEE
Confidence 34444 445667888887633222111110 112233444 36888887421 13678888
Q ss_pred ECCCCcEEeee-cCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEec-CCceecceEEeCCEEEEEe
Q 040693 283 DASNGNVLWST-ADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDT-GATIYGGASVSNGCIYMGN 358 (382)
Q Consensus 283 d~~tG~~~W~~-~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~-~~~~~~~p~~~~g~lyv~~ 358 (382)
+.. |+.+-.. ... ......+.++ ++++|++.. ..+.|+.+|.+ |+..-.+-. ....-...++.++.+|++.
T Consensus 151 ~~d-G~~~~~~~~~~--l~~Pnglavd~~~~~lY~aD~-~~~~I~~~d~d-G~~~~~~~~~~~~~P~glav~~~~lywtd 225 (318)
T 3sov_A 151 GMD-GSSRFIIINSE--IYWPNGLTLDYEEQKLYWADA-KLNFIHKSNLD-GTNRQAVVKGSLPHPFALTLFEDILYWTD 225 (318)
T ss_dssp ETT-SCSCEEEECSS--CSCEEEEEEETTTTEEEEEET-TTTEEEEEETT-SCSCEEEECSCCSCEEEEEEETTEEEEEE
T ss_pred EcC-CCCeEEEEECC--CCCccEEEEeccCCEEEEEEC-CCCEEEEEcCC-CCceEEEecCCCCCceEEEEeCCEEEEEe
Confidence 875 4322221 111 1122344554 689999875 57889999986 332222211 1122234556889999997
Q ss_pred CceeEeecCCccCCCCCeE
Q 040693 359 GYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 359 ~~g~~~~~~~~~~~~g~~l 377 (382)
.... .++.++..+|+.+
T Consensus 226 ~~~~--~V~~~~~~~G~~~ 242 (318)
T 3sov_A 226 WSTH--SILACNKYTGEGL 242 (318)
T ss_dssp TTTT--EEEEEETTTCCSC
T ss_pred cCCC--eEEEEECCCCCce
Confidence 6544 2455666667643
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.069 Score=55.10 Aligned_cols=74 Identities=16% Similarity=0.093 Sum_probs=46.4
Q ss_pred eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeC
Q 040693 249 DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDV 328 (382)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~ 328 (382)
+++.||++.. ..+.|..+|.....+.-.............+.++++.+|++.. ..+.|..+|+
T Consensus 550 ~~~~LY~aD~----------------~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~~lywtd~-~~~~V~~~d~ 612 (699)
T 1n7d_A 550 LSGRLYWVDS----------------KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI-INEAIFSANR 612 (699)
T ss_dssp TTCCEEEEET----------------TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETTEEEEECS-TTTCEEEEET
T ss_pred cCCEEEEEec----------------CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECCEEEEEeC-CCCeEEEEEc
Confidence 4688998742 3467899998643222111211111123345567788888874 6789999999
Q ss_pred CCCcEeEEEec
Q 040693 329 KTGKILWSYDT 339 (382)
Q Consensus 329 ~tG~ilw~~~~ 339 (382)
.+|+.+-.+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 99988766644
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.26 Score=44.59 Aligned_cols=130 Identities=10% Similarity=0.133 Sum_probs=73.6
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-.+.+ ........+..++.+|+......... .......+..+|+++. .|+.-
T Consensus 118 ~~~~~~d~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~~~-------~~~~~~~~~~yd~~~~--~W~~~ 184 (306)
T 3ii7_A 118 YLFECYDTRTE--SWHTKPSML--TQRCSHGMVEANGLIYVCGGSLGNNV-------SGRVLNSCEVYDPATE--TWTEL 184 (306)
T ss_dssp CCEEEEETTTT--EEEEECCCS--SCCBSCEEEEETTEEEEECCEESCTT-------TCEECCCEEEEETTTT--EEEEE
T ss_pred eeEEEEeCCCC--ceEeCCCCc--CCcceeEEEEECCEEEEECCCCCCCC-------cccccceEEEeCCCCC--eEEEC
Confidence 45899999875 477653321 12223333446778888643211000 0001466999999987 57754
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeec----CCCcEEEEeCCCCcEeEEEec--CCc-eecceEEeCCEEEEEeCc
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTY----RQGPIYAMDVKTGKILWSYDT--GAT-IYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~----~~g~l~~ld~~tG~ilw~~~~--~~~-~~~~p~~~~g~lyv~~~~ 360 (382)
.+.. .......+.++.+|+.... ....++++|+++.+ |+.-. +.. ...+.++.+++||+..+.
T Consensus 185 ~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 256 (306)
T 3ii7_A 185 CPMIEA-RKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNE--WKMVSPMPWKGVTVKCAAVGSIVYVLAGF 256 (306)
T ss_dssp CCCSSC-CBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTE--EEECCCCSCCBSCCEEEEETTEEEEEECB
T ss_pred CCccch-hhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCc--EEECCCCCCCccceeEEEECCEEEEEeCc
Confidence 3332 2233344557777775320 12468999998764 76532 222 234456679999998764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.26 Score=47.56 Aligned_cols=135 Identities=11% Similarity=0.122 Sum_probs=71.4
Q ss_pred cEEEEE-ccCcEEEEEeCCCCCeeeeec-cCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 206 DIVVAV-QKSGFAWALDRDSGSLIWSME-AGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 206 ~~v~~~-~~~g~l~ald~~tG~~~W~~~-~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
+.||+. ..++.++.+|.++|+.....- ... .......++ +++.||+... ....|+.
T Consensus 240 G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~----~~~~~~ia~dpdG~~LYvad~----------------~~~~I~~ 299 (433)
T 4hw6_A 240 GKIYYTRYHHAMISSYDPATGTLTEEEVMMDT----KGSNFHIVWHPTGDWAYIIYN----------------GKHCIYR 299 (433)
T ss_dssp CCEEECBTTCSEEEEECTTTCCEEEEEEECSC----CSSCEEEEECTTSSEEEEEET----------------TTTEEEE
T ss_pred CeEEEEECCCCEEEEEECCCCeEEEEEeccCC----CCCcccEEEeCCCCEEEEEeC----------------CCCEEEE
Confidence 445544 456889999999998744332 211 111122333 4566888742 2467888
Q ss_pred EECC--CCcEE----eeecCCCCC----------CC-CcceEE---------e-CCEEEEeeecCCCcEEEEeCCCCcEe
Q 040693 282 MDAS--NGNVL----WSTADPSNG----------TA-PGPVTV---------A-NGVLFGGSTYRQGPIYAMDVKTGKIL 334 (382)
Q Consensus 282 ~d~~--tG~~~----W~~~~~~~~----------~~-~~~~~~---------~-~~~v~~~~~~~~g~l~~ld~~tG~il 334 (382)
+|.. +++.. +--...... .. ..-+.+ + ++.+|++.. ..++|..|++ +|++.
T Consensus 300 ~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~-~n~~I~~~~~-~G~v~ 377 (433)
T 4hw6_A 300 VDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDR-DSHTVRVLTP-EGRVT 377 (433)
T ss_dssp EEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEET-TTTEEEEECT-TSEEE
T ss_pred EeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEEC-CCCEEEEECC-CCCEE
Confidence 7754 45321 111101000 00 111444 3 468888874 5678999996 57665
Q ss_pred EEEecCC--------------ceecc---eEEe--CCEEEEEeCcee
Q 040693 335 WSYDTGA--------------TIYGG---ASVS--NGCIYMGNGYKV 362 (382)
Q Consensus 335 w~~~~~~--------------~~~~~---p~~~--~g~lyv~~~~g~ 362 (382)
--.-.+. ..+.. .++. ++.|||+.....
T Consensus 378 t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 424 (433)
T 4hw6_A 378 TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNH 424 (433)
T ss_dssp EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCC
Confidence 4332211 01222 3445 799999986533
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.016 Score=59.82 Aligned_cols=145 Identities=10% Similarity=-0.010 Sum_probs=72.7
Q ss_pred EEEEE-ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 207 IVVAV-QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 207 ~v~~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.||+. ...+.|..+|.+........... .....+.++ .++.||++... ..+.|+.++
T Consensus 466 ~LY~tD~~~~~I~v~d~dg~~~~~l~~~~-----~~~P~giavDp~~g~ly~td~~---------------~~~~I~~~~ 525 (699)
T 1n7d_A 466 NIYWTDSVLGTVSVADTKGVKRKTLFREQ-----GSKPRAIVVDPVHGFMYWTDWG---------------TPAKIKKGG 525 (699)
T ss_dssp BCEECCTTTSCEEEEBSSSCCEEEECCCS-----SCCCCCEECCSSSSCCEECCCS---------------SSCCEEBCC
T ss_pred cEEEEeccCCeEEEEecCCCceEEEEeCC-----CCCcceEEEccCCCcEEEcccC---------------CCCeEEEEe
Confidence 34443 45567888887744332222211 011223334 36788886321 124566666
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecC-C--ceecceEEeCCEEEEEe
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG-A--TIYGGASVSNGCIYMGN 358 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~-~--~~~~~p~~~~g~lyv~~ 358 (382)
+......-..... ......++++ +++||++.. ..+.|+.+|++ |..+-.+-.. . ..-.+..+.+++||++.
T Consensus 526 ~dG~~~~~l~~~~--l~~PnGlavd~~~~~LY~aD~-~~~~I~~~d~d-G~~~~~~~~~~~~~~~P~glavd~~~lywtd 601 (699)
T 1n7d_A 526 LNGVDIYSLVTEN--IQWPNGITLDLLSGRLYWVDS-KLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFWTD 601 (699)
T ss_dssp SSSCCCCEESCSS--CSSCCCEEECTTTCCEEEEET-TTTEEEEECSS-SSCCEEECCCSSSCSSCCCCEEETTEEEEEC
T ss_pred CCCCCeeEEEeCC--CCCccEEEEeccCCEEEEEec-CCCeEEEEccC-CCceEEEEecCCcCCCceEeEEECCEEEEEe
Confidence 5322111111111 1123345554 578888874 56789999986 3322222211 1 12234566888999998
Q ss_pred CceeEeecCCccCCCCCeE
Q 040693 359 GYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 359 ~~g~~~~~~~~~~~~g~~l 377 (382)
..... ++.++..+|+.+
T Consensus 602 ~~~~~--V~~~d~~~G~~~ 618 (699)
T 1n7d_A 602 IINEA--IFSANRLTGSDV 618 (699)
T ss_dssp STTTC--EEEEETTTEEEE
T ss_pred CCCCe--EEEEEccCCCce
Confidence 64332 344555556554
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.3 Score=44.36 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=58.0
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-...+ ........++.++.||+....... .....+..+|+++. .|+.-
T Consensus 184 ~~~~~yd~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~-----------~~~~~v~~yd~~~~--~W~~~ 246 (308)
T 1zgk_A 184 NSAECYYPERN--EWRMITAMN--TIRSGAGVCVLHNCIYAAGGYDGQ-----------DQLNSVERYDVETE--TWTFV 246 (308)
T ss_dssp CCEEEEETTTT--EEEECCCCS--SCCBSCEEEEETTEEEEECCBCSS-----------SBCCCEEEEETTTT--EEEEC
T ss_pred ceEEEEeCCCC--eEeeCCCCC--CccccceEEEECCEEEEEeCCCCC-----------CccceEEEEeCCCC--cEEEC
Confidence 45899998765 677653321 112223334467888876432110 12366999999876 57753
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeec----CCCcEEEEeCCCCcEeEEE
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTY----RQGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~----~~g~l~~ld~~tG~ilw~~ 337 (382)
.+... ......+.++.+|+.... ....++++|+++.+ |+.
T Consensus 247 ~~~p~~r-~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 292 (308)
T 1zgk_A 247 APMKHRR-SALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT--WSE 292 (308)
T ss_dssp CCCSSCC-BSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE--EEE
T ss_pred CCCCCCc-cceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE--Eee
Confidence 33222 233334456777765421 13468899998654 654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.037 Score=55.24 Aligned_cols=145 Identities=10% Similarity=-0.032 Sum_probs=78.6
Q ss_pred EeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCccccee--eeCCeEEEEecCccccccccCCCCCCC
Q 040693 197 SMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAA--TDERRIYTNIANSQHKNFNLKPSKNST 274 (382)
Q Consensus 197 ~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~ 274 (382)
....+| +.++++...++.+..+|.++|+..--..... +.+. -|+..++...... .
T Consensus 116 ~~s~dg--~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--------~~~~~spDG~~la~~~~~~-------------~ 172 (582)
T 3o4h_A 116 SGVDTG--EAVVFTGATEDRVALYALDGGGLRELARLPG--------FGFVSDIRGDLIAGLGFFG-------------G 172 (582)
T ss_dssp EEEECS--SCEEEEEECSSCEEEEEEETTEEEEEEEESS--------CEEEEEEETTEEEEEEEEE-------------T
T ss_pred eeCCCC--CeEEEEecCCCCceEEEccCCcEEEeecCCC--------ceEEECCCCCEEEEEEEcC-------------C
Confidence 444555 4566666555556677888887554433211 2222 2677776553221 1
Q ss_pred CCceEEEEECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCC--cEEEEeCCCCcEeEEEecCCceecceE---
Q 040693 275 IAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGATIYGGAS--- 348 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~~~~~p~--- 348 (382)
....|+.+|+.+|+..--..... ....+... ++..++... .++ .|+.+|.++|+.. ...........+.
T Consensus 173 ~~~~i~~~d~~~g~~~~l~~~~~--~~~~~~~SpDG~~l~~~~--~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~ 247 (582)
T 3o4h_A 173 GRVSLFTSNLSSGGLRVFDSGEG--SFSSASISPGMKVTAGLE--TAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTA 247 (582)
T ss_dssp TEEEEEEEETTTCCCEEECCSSC--EEEEEEECTTSCEEEEEE--CSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSE
T ss_pred CCeEEEEEcCCCCCceEeecCCC--ccccceECCCCCEEEEcc--CCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhcc
Confidence 12569999999998763322221 11222222 344566333 466 8999999999987 4332222222233
Q ss_pred -----E-eCCEEEEEeCceeEeecCCc
Q 040693 349 -----V-SNGCIYMGNGYKVTVGFGNK 369 (382)
Q Consensus 349 -----~-~~g~lyv~~~~g~~~~~~~~ 369 (382)
. .+|+++++...+....+|.+
T Consensus 248 ~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 248 ITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 3 45677776654444566655
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.43 Score=49.05 Aligned_cols=144 Identities=10% Similarity=0.025 Sum_probs=72.1
Q ss_pred cEEEEEccCc--EEEEEeCCCCCeeeeeccCCCCCC-CCcccceee-e--CCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 206 DIVVAVQKSG--FAWALDRDSGSLIWSMEAGPGGLG-GGAMWGAAT-D--ERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 206 ~~v~~~~~~g--~l~ald~~tG~~~W~~~~~~~~~~-g~~~~~~~~-~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
.++++++.++ .++.+|..+. .|+.-....... .......++ + .+.||+..+..... ....+.+
T Consensus 502 ~iyv~GG~~~~~~v~~yd~~t~--~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~---------~~~~~~v 570 (695)
T 2zwa_A 502 NVLILGGVTEGPAMLLYNVTEE--IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ---------TTVSDKA 570 (695)
T ss_dssp CEEEECCBCSSCSEEEEETTTT--EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS---------SCBCCEE
T ss_pred EEEEECCCCCCCCEEEEECCCC--ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC---------CeeeCcE
Confidence 3444444332 6999999875 488654311011 111222122 2 26788764321100 0223679
Q ss_pred EEEECCCCc----EEeeecC--C-CCCCCCcceEEeCCEEEEeeec-------CCCcEEEEeCCCCcEeEEE-ecCCce-
Q 040693 280 VAMDASNGN----VLWSTAD--P-SNGTAPGPVTVANGVLFGGSTY-------RQGPIYAMDVKTGKILWSY-DTGATI- 343 (382)
Q Consensus 280 ~a~d~~tG~----~~W~~~~--~-~~~~~~~~~~~~~~~v~~~~~~-------~~g~l~~ld~~tG~ilw~~-~~~~~~- 343 (382)
+.+|+.+.+ ..|+.-. + ......+...+.++.+|+.... ....++++|+.+.+ |+. +++...
T Consensus 571 ~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~--W~~~~~p~~~~ 648 (695)
T 2zwa_A 571 IIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET--LTSIPISRRIW 648 (695)
T ss_dssp EEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE--EEECCCCHHHH
T ss_pred EEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe--EEEeecccccc
Confidence 999999887 4576431 1 2222333344443766665321 13569999998764 763 222111
Q ss_pred ---------ecceEEeCCEEEEEeCcee
Q 040693 344 ---------YGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 344 ---------~~~p~~~~g~lyv~~~~g~ 362 (382)
.+..++.+++|||..+.+.
T Consensus 649 ~~~~p~~~gh~~~~~~~g~i~v~GGg~~ 676 (695)
T 2zwa_A 649 EDHSLMLAGFSLVSTSMGTIHIIGGGAT 676 (695)
T ss_dssp HHSCCCCSSCEEECC---CEEEECCEEE
T ss_pred CCCCccceeeeEEEeCCCEEEEEeCCcc
Confidence 1222234558999877544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.011 Score=61.40 Aligned_cols=107 Identities=7% Similarity=-0.037 Sum_probs=59.7
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--e---CCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--D---ERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~---~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
+..++++..+|.+..+|..+++..+.....-. ........... + +..++.+ ..++.|
T Consensus 170 ~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~-----------------s~Dg~I 231 (753)
T 3jro_A 170 SRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASV-----------------SQDRTC 231 (753)
T ss_dssp GCCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEE-----------------ESSSCE
T ss_pred CCEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEE-----------------ecCCEE
Confidence 46788888899999999988865544322100 00112222222 2 3344443 345789
Q ss_pred EEEECCCCcEEeeecCCCC---CCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCC
Q 040693 280 VAMDASNGNVLWSTADPSN---GTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTG 331 (382)
Q Consensus 280 ~a~d~~tG~~~W~~~~~~~---~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG 331 (382)
..+|..+++..+....... ......+.+ ++..++.++ .+|.|+.+|..++
T Consensus 232 ~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s--~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG--GDNKVTLWKENLE 286 (753)
T ss_dssp EEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC--SSSCEECCBCCSS
T ss_pred EEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEc--CCCEEEEEecCCC
Confidence 9999999865544332211 011122233 234566555 4899999998754
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.35 Score=44.05 Aligned_cols=127 Identities=15% Similarity=0.159 Sum_probs=72.0
Q ss_pred cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeec
Q 040693 215 GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTA 294 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~ 294 (382)
..++.+|..+. .|+.-.+.+ ........++.++.||+..+.... ......+..+|+++.+ |+.-
T Consensus 127 ~~~~~yd~~~~--~W~~~~~~p--~~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~~~~~yd~~~~~--W~~~ 190 (318)
T 2woz_A 127 DSVLCYDPVAA--KWSEVKNLP--IKVYGHNVISHNGMIYCLGGKTDD----------KKCTNRVFIYNPKKGD--WKDL 190 (318)
T ss_dssp EEEEEEETTTT--EEEEECCCS--SCEESCEEEEETTEEEEECCEESS----------SCBCCCEEEEETTTTE--EEEE
T ss_pred ceEEEEeCCCC--CEeECCCCC--CcccccEEEEECCEEEEEcCCCCC----------CCccceEEEEcCCCCE--EEEC
Confidence 35899998865 577643321 111223334467888876432110 0223569999998874 7754
Q ss_pred --CCCCCCCCcceEEeCCEEEEeeec-C---CCcEEEEeCCCCcEeEEEec--CCc-eecceEEeCCEEEEEeCc
Q 040693 295 --DPSNGTAPGPVTVANGVLFGGSTY-R---QGPIYAMDVKTGKILWSYDT--GAT-IYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 295 --~~~~~~~~~~~~~~~~~v~~~~~~-~---~g~l~~ld~~tG~ilw~~~~--~~~-~~~~p~~~~g~lyv~~~~ 360 (382)
.+... ......+.++.+|+.... . ...++++|+++.+ |+.-. +.. ...+.++.+++||+..+.
T Consensus 191 ~~~p~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~ 262 (318)
T 2woz_A 191 APMKTPR-SMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNK--WEVMTEFPQERSSISLVSLAGSLYAIGGF 262 (318)
T ss_dssp CCCSSCC-BSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCC--EEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred CCCCCCc-ccceEEEECCEEEEEcCcCCCCccceEEEEECCCCe--EEECCCCCCcccceEEEEECCEEEEECCe
Confidence 33322 223334556766665421 1 2358899998764 76532 222 234556789999998664
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.008 Score=56.03 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=16.5
Q ss_pred ecEEEEEccCcEEEEEeCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSG 225 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG 225 (382)
+..|+++..|+.+..+|..++
T Consensus 158 ~~~l~~~~~d~~i~iwd~~~~ 178 (377)
T 3dwl_C 158 NVLLAAGCADRKAYVLSAYVR 178 (377)
T ss_dssp SSEEEEEESSSCEEEEEECCS
T ss_pred CCEEEEEeCCCEEEEEEEEec
Confidence 357888888999999998643
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.16 Score=47.59 Aligned_cols=101 Identities=11% Similarity=0.182 Sum_probs=60.7
Q ss_pred CceEEEEEC---C----CCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCC-----CCcEeEEEecCC
Q 040693 276 AGGWVAMDA---S----NGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVK-----TGKILWSYDTGA 341 (382)
Q Consensus 276 ~g~v~a~d~---~----tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~-----tG~ilw~~~~~~ 341 (382)
.+.+.-+++ . +++++.++.++.. .-.+.++ .+.+|++.. +..|+.+|++ +++++.++..+.
T Consensus 152 ~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq---~EgcvvDd~~g~Lyv~eE--d~GIw~~da~p~~~~~~~~v~~~~~g~ 226 (355)
T 3amr_A 152 EGEFEQYELKADKNGYISGKKVRAFKMNSQ---TEGMAADDEYGRLYIAEE--DEAIWKFSAEPDGGSNGTVIDRADGRH 226 (355)
T ss_dssp SSEEEEEEEEECTTSCEEEEEEEEEECSSC---EEEEEEETTTTEEEEEET--TTEEEEEECSTTSCSCCEEEEEBSSSS
T ss_pred CCeEEEEEEEeCCCCcccceEEEEecCCCC---cceEEEcCCCCeEEEecc--cceEEEEeCCcCCCCCceEEEEecCCc
Confidence 366655444 3 4477788887652 2233454 489999984 5669999965 477887665432
Q ss_pred --ceecceEEe-C----CEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 342 --TIYGGASVS-N----GCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 342 --~~~~~p~~~-~----g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.-....++. . +.|++++.......+|... .+.+.+-+|++
T Consensus 227 l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~-~~~~~vg~f~I 273 (355)
T 3amr_A 227 LTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ-GKNKYVADFRI 273 (355)
T ss_dssp BCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS-TTCCEEEEEEE
T ss_pred cccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC-CCCcEEEEEEe
Confidence 122344442 2 4677777544455666553 25777877753
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.44 Score=44.61 Aligned_cols=155 Identities=7% Similarity=-0.020 Sum_probs=82.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCccccee-eeCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAA-TDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
+..|+.++.|+.+...|.+||+.+..+........ .....+ ..++.+++...+... .+.+.. +..++++..+|
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~--~v~~vafSpdG~~lvs~s~~~~-~w~laS---Gs~D~tIklWd 266 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQA--SVCHKAYSEMGLLFIVLSHPCA-KESESL---RSPVFQLIVIN 266 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCC---C--CCEEEEEEETTEEEEEEC----------------CCEEEEEEE
T ss_pred CceEEEecCCCcEEEEECCCCcEEEEEcCCCccee--eeEEEEECCCCCEEEEeccCCC-cceeec---cCCCcEEEEEE
Confidence 46788889999999999999999998863211000 110001 124444443222111 111111 14568899999
Q ss_pred CCCCcEEeeecC--CCCCCCCcce--EEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEE-eCCEEEEE
Q 040693 284 ASNGNVLWSTAD--PSNGTAPGPV--TVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASV-SNGCIYMG 357 (382)
Q Consensus 284 ~~tG~~~W~~~~--~~~~~~~~~~--~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~-~~g~lyv~ 357 (382)
+++|+.+-.... +.+. ....+ ...+.++..++ .++.|...|.++|+.+-.++-.. ...+..++ .+++++++
T Consensus 267 ~~tgk~l~v~~~~~p~Gh-~~~~lsg~~sg~~lASgS--~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaS 343 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQ-AGRFLEGDVKDHCAAAIL--TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLA 343 (356)
T ss_dssp TTTTEEEEEEEECCCTTC-CCCEEEEEEETTEEEEEE--TTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEE
T ss_pred CCCCEEEEEEEeeccCCC-cceeEccccCCCEEEEEc--CCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEE
Confidence 999988755421 2111 01111 11233444444 48999999999999998875332 23333333 35555554
Q ss_pred eCceeEeecCC
Q 040693 358 NGYKVTVGFGN 368 (382)
Q Consensus 358 ~~~g~~~~~~~ 368 (382)
.+.+..+++|.
T Consensus 344 GS~D~TIklWd 354 (356)
T 2w18_A 344 GQKDGNIFVYH 354 (356)
T ss_dssp ECTTSCEEEEE
T ss_pred EECCCcEEEec
Confidence 44444455543
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.44 Score=44.44 Aligned_cols=110 Identities=15% Similarity=-0.059 Sum_probs=61.4
Q ss_pred cEEEEEc-cC-cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 206 DIVVAVQ-KS-GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 206 ~~v~~~~-~~-g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
+.||+.+ .. +.++.++.+ |+.+-..-.. ......+.++ +++.||++.. ..+.|..
T Consensus 171 g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~----~~~~PnGla~d~~~~~lY~aD~----------------~~~~I~~ 229 (349)
T 3v64_C 171 GTIYWTDWGNTPRIEASSMD-GSGRRIIADT----HLFWPNGLTIDYAGRRMYWVDA----------------KHHVIER 229 (349)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCSCEESCCS----SCSCEEEEEEETTTTEEEEEET----------------TTTEEEE
T ss_pred CeEEEeccCCCCEEEEEeCC-CCCcEEEEEC----CCCCcceEEEeCCCCEEEEEEC----------------CCCEEEE
Confidence 3444443 33 667777765 4332221100 0111223444 4788999742 3467999
Q ss_pred EECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 282 MDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
+|.......--..... .....+.+.++.+|++.. ..+.|..+|..+|+.+-.+..
T Consensus 230 ~~~dG~~~~~~~~~~~--~~P~giav~~~~ly~td~-~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 230 ANLDGSHRKAVISQGL--PHPFAITVFEDSLYWTDW-HTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp EETTSCSCEEEECSSC--SSEEEEEEETTEEEEEET-TTTEEEEEETTTCCSCEEEEC
T ss_pred EeCCCCceEEEEeCCC--CCceEEEEECCEEEEecC-CCCeEEEEEccCCCccEEecc
Confidence 9976433222222211 122334557889999875 678999999888887666654
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.07 Score=54.61 Aligned_cols=55 Identities=7% Similarity=0.004 Sum_probs=37.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|.++|+.+....+... ...+.+.+++..|++...
T Consensus 89 ~~~i~~~d~~~g~~~~~~~l~~~--------------~~~~~~SPDG~~la~~~~------------------------- 129 (719)
T 1z68_A 89 TATYYIYDLSNGEFVRGNELPRP--------------IQYLCWSPVGSKLAYVYQ------------------------- 129 (719)
T ss_dssp EEEEEEEETTTTEECCSSCCCSS--------------BCCEEECSSTTCEEEEET-------------------------
T ss_pred ceEEEEEECCCCccccceecCcc--------------cccceECCCCCEEEEEEC-------------------------
Confidence 57899999999987543333110 135778888877777542
Q ss_pred CCCCCCCCcceEEEEECCCCcEE
Q 040693 134 KCIEPENHSNSLLALDLDTGKIV 156 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~ 156 (382)
+.|+.+|..+|+.+
T Consensus 130 ---------~~i~~~~~~~g~~~ 143 (719)
T 1z68_A 130 ---------NNIYLKQRPGDPPF 143 (719)
T ss_dssp ---------TEEEEESSTTSCCE
T ss_pred ---------CeEEEEeCCCCCcE
Confidence 68999999888764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.11 Score=47.47 Aligned_cols=136 Identities=13% Similarity=0.084 Sum_probs=63.7
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCC-CceEEEEECCCCcEEee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTI-AGGWVAMDASNGNVLWS 292 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~g~v~a~d~~tG~~~W~ 292 (382)
...|+.+|..+|+.+-.... + ......|.+ ++ ++|+...... . + ... ...|+.+| +|+..--
T Consensus 151 ~~~l~~~d~~~~~~~~~l~~-~--~~~~~~~sp--dg-~~~~~~~~~~-~-----~---~~~~~~~l~~~d--~~~~~~l 213 (347)
T 2gop_A 151 KTTFWIFDTESEEVIEEFEK-P--RFSSGIWHR--DK-IVVNVPHREI-I-----P---QYFKFWDIYIWE--DGKEEKM 213 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEE-E--TTCEEEEET--TE-EEEEEECCCS-S-----C---CSSCCEEEEEEE--TTEEEEE
T ss_pred cceEEEEECCCCeEEeeecC-C--CcccccCCC--Ce-EEEEEecccc-c-----c---cccccccEEEeC--CCceEEe
Confidence 35799999999887333332 1 111122221 33 5554422100 0 0 001 35688888 7765433
Q ss_pred ecCCCCCCCCcceEEeCCEEEEeeecC------CCcEEEEeCCCCcEeEEEecCCceecc-eEEeCCEEEEEeCceeEee
Q 040693 293 TADPSNGTAPGPVTVANGVLFGGSTYR------QGPIYAMDVKTGKILWSYDTGATIYGG-ASVSNGCIYMGNGYKVTVG 365 (382)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~~~~~~------~g~l~~ld~~tG~ilw~~~~~~~~~~~-p~~~~g~lyv~~~~g~~~~ 365 (382)
... . . ...+.-++..+++.+... ...|+.+| +|+..--.......... +...++ +|+....+....
T Consensus 214 ~~~-~-~--~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~sdg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 214 FEK-V-S--FYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKDGK-VYFTLFEEGSVN 286 (347)
T ss_dssp EEE-E-S--EEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEETTE-EEEEEEETTEEE
T ss_pred ccC-c-c--eeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEcCc-EEEEEecCCcEE
Confidence 332 1 1 112233445454444211 34799999 56643211111122333 555555 666555444567
Q ss_pred cCCccCCCCCe
Q 040693 366 FGNKNFTSGTS 376 (382)
Q Consensus 366 ~~~~~~~~g~~ 376 (382)
+| ++ +|+.
T Consensus 287 l~-~~--~g~~ 294 (347)
T 2gop_A 287 LY-IW--DGEI 294 (347)
T ss_dssp EE-EE--SSSE
T ss_pred EE-Ec--CCce
Confidence 78 77 3554
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.17 Score=51.47 Aligned_cols=79 Identities=13% Similarity=0.035 Sum_probs=44.1
Q ss_pred eEEEEECCCCcEEeee----cCCCCCCCCcceEEeCCEEEEeeecC----------CCcEEEEeCCCCcEeEEEecC--C
Q 040693 278 GWVAMDASNGNVLWST----ADPSNGTAPGPVTVANGVLFGGSTYR----------QGPIYAMDVKTGKILWSYDTG--A 341 (382)
Q Consensus 278 ~v~a~d~~tG~~~W~~----~~~~~~~~~~~~~~~~~~v~~~~~~~----------~g~l~~ld~~tG~ilw~~~~~--~ 341 (382)
.+..+|+.+.+ |+. .++..+.....+.+.++.||+..... ...+.++|+++. .|+.-.+ .
T Consensus 433 ~v~~yd~~~~~--W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~--~W~~~~~~~~ 508 (656)
T 1k3i_A 433 IITLGEPGTSP--NTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD--TFYKQNPNSI 508 (656)
T ss_dssp EEECCSTTSCC--EEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--EEEECCCCSS
T ss_pred EEEcCCCCCCC--eeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC--ceeecCCCCC
Confidence 57788888775 553 33443333343444466666644211 145889999865 4765221 1
Q ss_pred -ceecceEEe--CCEEEEEeCc
Q 040693 342 -TIYGGASVS--NGCIYMGNGY 360 (382)
Q Consensus 342 -~~~~~p~~~--~g~lyv~~~~ 360 (382)
....+.++. +++||+..+.
T Consensus 509 ~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 509 VRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CCCTTEEEEECTTSCEEEEECC
T ss_pred ccccccHhhcCCCcEEEecCCC
Confidence 122333444 9999998763
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.053 Score=54.87 Aligned_cols=98 Identities=12% Similarity=0.011 Sum_probs=53.5
Q ss_pred eEEEEECCCCcEEeeecCCCCC---CC---CcceEE-eCC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecce-E
Q 040693 278 GWVAMDASNGNVLWSTADPSNG---TA---PGPVTV-ANG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGA-S 348 (382)
Q Consensus 278 ~v~a~d~~tG~~~W~~~~~~~~---~~---~~~~~~-~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p-~ 348 (382)
+|+.+|+++|+..-........ .+ ...+.+ .++ ++|.... ....|+.+|.++|+ +-++.......... .
T Consensus 266 ~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~s 343 (662)
T 3azo_A 266 NLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAAGPWTEWAATLT 343 (662)
T ss_dssp EEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECCSSCCEEEEEEE
T ss_pred EEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEecCCCCeEEEEEe
Confidence 7999999888765333322110 01 122333 244 5555442 34568888988776 34444333333333 4
Q ss_pred EeCCEEEEEe-CceeEeecCCccCCCCCeE
Q 040693 349 VSNGCIYMGN-GYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 349 ~~~g~lyv~~-~~g~~~~~~~~~~~~g~~l 377 (382)
..++++++.. +......+|.++..+|+..
T Consensus 344 ~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~ 373 (662)
T 3azo_A 344 VSGTRAVGVAASPRTAYEVVELDTVTGRAR 373 (662)
T ss_dssp EETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred cCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence 5666666543 3334456777887777754
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.11 Score=55.12 Aligned_cols=108 Identities=9% Similarity=0.048 Sum_probs=68.5
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
..|++++.|+.+..+|..+|+.+..+.... ....... ++..++++ ..++.|..+|
T Consensus 70 ~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~------~V~~v~~sp~g~~l~sg-----------------s~dg~V~lwd 126 (902)
T 2oaj_A 70 IYLVVINAKDTVYVLSLYSQKVLTTVFVPG------KITSIDTDASLDWMLIG-----------------LQNGSMIVYD 126 (902)
T ss_dssp TEEEEEETTCEEEEEETTTCSEEEEEECSS------CEEEEECCTTCSEEEEE-----------------ETTSCEEEEE
T ss_pred CEEEEEECcCeEEEEECCCCcEEEEEcCCC------CEEEEEECCCCCEEEEE-----------------cCCCcEEEEE
Confidence 478888899999999999999887775321 1222222 56677776 3458899999
Q ss_pred CCCCcEE-eee-------cCCCC-CCCCcceEEeC---CEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 284 ASNGNVL-WST-------ADPSN-GTAPGPVTVAN---GVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 284 ~~tG~~~-W~~-------~~~~~-~~~~~~~~~~~---~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
+++++.. ++. ..... ......+.+.. +.++++. .++.+ ..|.++++.+-.+..
T Consensus 127 ~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~--~dg~v-lWd~~~~~~~~~~~~ 191 (902)
T 2oaj_A 127 IDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISY--EYVTL-TYSLVENEIKQSFIY 191 (902)
T ss_dssp TTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEEC--SSCEE-EEETTTTEEEEEECC
T ss_pred CCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEe--CCCcE-EEECCCCceEEEEec
Confidence 9999864 221 11110 01112233322 3555555 48888 999999998877653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.075 Score=54.24 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=42.5
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|+++|+..-........ . ....++.+.+++..|+++....
T Consensus 36 dg~i~~~d~~~g~~~~~~~~~~~~--------~--~~v~~~~~SpDg~~l~~~~~~~----------------------- 82 (723)
T 1xfd_A 36 KGTVRLWNVETNTSTVLIEGKKIE--------S--LRAIRYEISPDREYALFSYNVE----------------------- 82 (723)
T ss_dssp SSCEEEBCGGGCCCEEEECTTTTT--------T--TTCSEEEECTTSSEEEEEESCC-----------------------
T ss_pred CCCEEEEECCCCcEEEEecccccc--------c--cccceEEECCCCCEEEEEecCc-----------------------
Confidence 788999999999886554321100 0 0013577888888777765431
Q ss_pred CCCCCCCCcceEEEEECCCCcE
Q 040693 134 KCIEPENHSNSLLALDLDTGKI 155 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~ 155 (382)
........+.++.+|.++|+.
T Consensus 83 -~~~~~~~~~~i~~~d~~~~~~ 103 (723)
T 1xfd_A 83 -PIYQHSYTGYYVLSKIPHGDP 103 (723)
T ss_dssp -CCSSSCCCSEEEEEESSSCCC
T ss_pred -cceeecceeeEEEEECCCCce
Confidence 011122348899999999886
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=1 Score=47.07 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=61.2
Q ss_pred cEEEEEc-cC-cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee--CCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 206 DIVVAVQ-KS-GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 206 ~~v~~~~-~~-g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
+.||+.. .. +.|..++.+ |+.+-.+-.. ......+.+++ ++.||++.. ....|..
T Consensus 526 g~LYwtD~g~~~~I~~~~~d-G~~~~~lv~~----~l~~P~GLavD~~~~~LYwaD~----------------~~~~I~~ 584 (791)
T 3m0c_C 526 GFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDS----------------KLHSISS 584 (791)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCCEEEEECS----SCSCEEEEEEETTTTEEEEEET----------------TTTEEEE
T ss_pred CCEEEecCCCCCeEEEEecC-CCceEEEEeC----CCCCceEEEEecCCCeEEEEeC----------------CCCcEEE
Confidence 4555554 22 566666665 4433222110 00122334444 788998732 2467889
Q ss_pred EECCCCcEEeeec-CCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 282 MDASNGNVLWSTA-DPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 282 ~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
+|+. |+.+..+- ........-.+.+.++.||++.. ..+.|+.+|..+|+.+-.+.
T Consensus 585 ~d~d-G~~~~~v~~~~~~l~~P~glav~~~~lYwtD~-~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 585 IDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI-INEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EETT-SCSCEEEEECTTTTSSEEEEEEETTEEEEEET-TTTEEEEEETTTCCCCEEEE
T ss_pred EecC-CCceEEEecCCCccCCCCEEEEeCCEEEEEEC-CCCEEEEEeCCCCcceEEee
Confidence 9975 44333332 21111122244566889999875 67899999998997766554
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.31 Score=45.26 Aligned_cols=126 Identities=11% Similarity=0.079 Sum_probs=69.5
Q ss_pred CcEEEEEeCC---CCCeeeeeccCCCCCC-----CCcc--cc-eee-eCCeEEEEecCccccccccCCCCCCCCC-ceEE
Q 040693 214 SGFAWALDRD---SGSLIWSMEAGPGGLG-----GGAM--WG-AAT-DERRIYTNIANSQHKNFNLKPSKNSTIA-GGWV 280 (382)
Q Consensus 214 ~g~l~ald~~---tG~~~W~~~~~~~~~~-----g~~~--~~-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~-g~v~ 280 (382)
+..|.++|.. ||+.+|..++...... +... .. .++ .++.+|++.. .. +.|+
T Consensus 99 ~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s----------------~~~~~I~ 162 (334)
T 2p9w_A 99 ASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA----------------LGMPAIA 162 (334)
T ss_dssp CCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE----------------ESSCEEE
T ss_pred CCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC----------------CCCCeEE
Confidence 5789999999 9999999986421000 0011 11 222 4678998632 34 6788
Q ss_pred EEECCCCc-EEeeecCCCC--CC-CCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecC--C------ceec-c
Q 040693 281 AMDASNGN-VLWSTADPSN--GT-APGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG--A------TIYG-G 346 (382)
Q Consensus 281 a~d~~tG~-~~W~~~~~~~--~~-~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~--~------~~~~-~ 346 (382)
.+++..-+ ..|-.+.+.. .. ..+-.... +.++++... .|+|++||.++ ...|.++.. + ..-. .
T Consensus 163 rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~--~g~L~~fD~~~-pv~~~v~~~~~G~~~~~~~~dgil 239 (334)
T 2p9w_A 163 RVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG--PRALTAFDVSK-PYAWPEPVKINGDFGTLSGTEKIV 239 (334)
T ss_dssp EECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS--SSSEEEEECSS-SSCCCEECEESSCCCCCTTEEEEE
T ss_pred EEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC--CCeEEEEcCCC-CcceeecccccCCcccccCccccc
Confidence 88876332 3365443221 11 12222232 446666653 89999999884 334445442 1 0111 3
Q ss_pred eEEeCCEE-EEEe
Q 040693 347 ASVSNGCI-YMGN 358 (382)
Q Consensus 347 p~~~~g~l-yv~~ 358 (382)
|.-.+|++ +|++
T Consensus 240 p~~~~G~vllV~~ 252 (334)
T 2p9w_A 240 TVPVGNESVLVGA 252 (334)
T ss_dssp EEEETTEEEEEEE
T ss_pred ccccCCEEEEEEc
Confidence 44477777 5554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.21 Score=49.67 Aligned_cols=135 Identities=15% Similarity=0.112 Sum_probs=71.1
Q ss_pred cEEEEEccC----cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCc--
Q 040693 206 DIVVAVQKS----GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAG-- 277 (382)
Q Consensus 206 ~~v~~~~~~----g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g-- 277 (382)
..|+....+ ..++.+|.++|+..- ..... .....+.. |+..|+.+ ...+
T Consensus 162 ~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~~~~-----~~~~~~~~SpDG~~l~~~-----------------~~~~~~ 218 (582)
T 3o4h_A 162 DLIAGLGFFGGGRVSLFTSNLSSGGLRV-FDSGE-----GSFSSASISPGMKVTAGL-----------------ETAREA 218 (582)
T ss_dssp TEEEEEEEEETTEEEEEEEETTTCCCEE-ECCSS-----CEEEEEEECTTSCEEEEE-----------------ECSSCE
T ss_pred CEEEEEEEcCCCCeEEEEEcCCCCCceE-eecCC-----CccccceECCCCCEEEEc-----------------cCCCee
Confidence 445444433 679999999998762 22111 12233333 56666633 1224
Q ss_pred eEEEEECCCCcEEeeecCCCCCCCCcce--------EEeCC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceE
Q 040693 278 GWVAMDASNGNVLWSTADPSNGTAPGPV--------TVANG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS 348 (382)
Q Consensus 278 ~v~a~d~~tG~~~W~~~~~~~~~~~~~~--------~~~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~ 348 (382)
.|+.+|+.+|+.. ........ ...+. ...++ +++..+ .++.+..++. |+.+- ...+...++.
T Consensus 219 ~i~~~d~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~~~~--~~g~~~l~~~--g~~~~---~~~~~v~~~~ 289 (582)
T 3o4h_A 219 RLVTVDPRDGSVE-DLELPSKD-FSSYRPTAITWLGYLPDGRLAVVAR--REGRSAVFID--GERVE---APQGNHGRVV 289 (582)
T ss_dssp EEEEECTTTCCEE-ECCCSCSH-HHHHCCSEEEEEEECTTSCEEEEEE--ETTEEEEEET--TEEEC---CCSSEEEEEE
T ss_pred EEEEEcCCCCcEE-EccCCCcC-hhhhhhccccceeEcCCCcEEEEEE--cCCcEEEEEE--CCeec---cCCCceEEEE
Confidence 7999999999988 44332211 11111 22344 444444 4788877777 76543 2223333444
Q ss_pred EeCCEEEEEeC-ceeEeecCCccCC
Q 040693 349 VSNGCIYMGNG-YKVTVGFGNKNFT 372 (382)
Q Consensus 349 ~~~g~lyv~~~-~g~~~~~~~~~~~ 372 (382)
+.++++++..+ ...-..+|.++..
T Consensus 290 ~sdg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 290 LWRGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EETTEEEEEEEETTEEEEEEEETTC
T ss_pred ecCCEEEEEEcCCCCCCeEEEEcCC
Confidence 45777766533 3333445555543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.72 Score=43.19 Aligned_cols=151 Identities=12% Similarity=0.072 Sum_probs=72.6
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|...|++||+.+..+...........+..+ . +....++....+. ....+..+..|+.+..+|
T Consensus 202 D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf-S-------------pdG~~lvs~s~~~-~~w~laSGs~D~tIklWd 266 (356)
T 2w18_A 202 MNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY-S-------------EMGLLFIVLSHPC-AKESESLRSPVFQLIVIN 266 (356)
T ss_dssp TSEEEEEETTTCCEEEEEECCC---CCCEEEEE-E-------------ETTEEEEEEC-------------CCEEEEEEE
T ss_pred CCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE-C-------------CCCCEEEEeccCC-CcceeeccCCCcEEEEEE
Confidence 589999999999999998643221100000000 0 0011111110000 012345567788999999
Q ss_pred CCCCCeeeeeccC-CCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC
Q 040693 222 RDSGSLIWSMEAG-PGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT 300 (382)
Q Consensus 222 ~~tG~~~W~~~~~-~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~ 300 (382)
.++|+.+-..... +.+-.+ ........+..+..+ ..+++|...|+++|+.+-+........
T Consensus 267 ~~tgk~l~v~~~~~p~Gh~~-~~lsg~~sg~~lASg-----------------S~DgTIkIWDl~tGk~l~tL~gH~~~v 328 (356)
T 2w18_A 267 PKTTLSVGVMLYCLPPGQAG-RFLEGDVKDHCAAAI-----------------LTSGTIAIWDLLLGQCTALLPPVSDQH 328 (356)
T ss_dssp TTTTEEEEEEEECCCTTCCC-CEEEEEEETTEEEEE-----------------ETTSCEEEEETTTCSEEEEECCC--CC
T ss_pred CCCCEEEEEEEeeccCCCcc-eeEccccCCCEEEEE-----------------cCCCcEEEEECCCCcEEEEecCCCCCe
Confidence 9999876543211 100001 111111122223322 345889999999999988876433211
Q ss_pred CCcceEE--eCCEEEEeeecCCCcEEEEeC
Q 040693 301 APGPVTV--ANGVLFGGSTYRQGPIYAMDV 328 (382)
Q Consensus 301 ~~~~~~~--~~~~v~~~~~~~~g~l~~ld~ 328 (382)
...+.+ ++.+++.++ .++.|...|.
T Consensus 329 -vs~vafSPDG~~LaSGS--~D~TIklWd~ 355 (356)
T 2w18_A 329 -WSFVKWSGTDSHLLAGQ--KDGNIFVYHY 355 (356)
T ss_dssp -CCEEEECSSSSEEEEEC--TTSCEEEEEE
T ss_pred -EEEEEECCCCCEEEEEE--CCCcEEEecC
Confidence 122223 345666666 4788876663
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.25 Score=49.89 Aligned_cols=144 Identities=15% Similarity=0.088 Sum_probs=69.8
Q ss_pred cEEEEEeCCC------CCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC-
Q 040693 215 GFAWALDRDS------GSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS- 285 (382)
Q Consensus 215 g~l~ald~~t------G~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~- 285 (382)
..|+.+|.++ |+..--..... .....+.. |+..|++........ ......|+.+|+.
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~SpDG~~la~~~~~~~~~---------~~~~~~i~~~d~~~ 226 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVRELSDDAH-----RFVTGPRLSPDGRQAVWLAWDHPRM---------PWEGTELKTARVTE 226 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSEESSCSCS-----SEECCCEECTTSSEEEEEEECTTCC---------TTTCEEEEEEEECT
T ss_pred eEEEEEECCCCccccCCceeEEEecCC-----CcccCceECCCCCEEEEEECCCCCC---------CCCCcEEEEEEECC
Confidence 5799999988 55432210111 11222222 666666554321100 0123579999999
Q ss_pred CC---cEEeeecCCCCCCCCcceEEeCCEEEEeeecCCC--cEEEEeCCCCcEeEEEecCCce--------ecceEE-eC
Q 040693 286 NG---NVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGATI--------YGGASV-SN 351 (382)
Q Consensus 286 tG---~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~~--------~~~p~~-~~ 351 (382)
+| +..-....... ....+....++.+++.+. .++ .|+.+|.++|+..--....... .....+ .+
T Consensus 227 ~g~~~~~~~l~~~~~~-~~~~~~~spdg~l~~~~~-~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~ 304 (662)
T 3azo_A 227 DGRFADTRTLLGGPEE-AIAQAEWAPDGSLIVATD-RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLAN 304 (662)
T ss_dssp TSCEEEEEEEEEETTB-CEEEEEECTTSCEEEEEC-TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTT
T ss_pred CCcccccEEeCCCCCc-eEcceEECCCCeEEEEEC-CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCC
Confidence 68 33322221111 111222222443444442 355 7999998888753221111111 112333 36
Q ss_pred CEEEEEeCceeEeecCCccCCCCC
Q 040693 352 GCIYMGNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 352 g~lyv~~~~g~~~~~~~~~~~~g~ 375 (382)
+++++.... ....+|.++..+|+
T Consensus 305 ~~~~~~~~~-~~~~l~~~d~~~~~ 327 (662)
T 3azo_A 305 GLIAVVHGK-GAAVLGILDPESGE 327 (662)
T ss_dssp SCEEEEEBS-SSCEEEEEETTTTE
T ss_pred CEEEEEEEc-CccEEEEEECCCCc
Confidence 777776655 55667777766554
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=96.29 E-value=1.2 Score=45.77 Aligned_cols=96 Identities=8% Similarity=-0.048 Sum_probs=52.3
Q ss_pred CceEEEEECCCCcEE-eeecCCCCCCCCcceEEeCCEEEEeeec--CCCcEEEEeCCCCcEeEEEecCC--ceecceEEe
Q 040693 276 AGGWVAMDASNGNVL-WSTADPSNGTAPGPVTVANGVLFGGSTY--RQGPIYAMDVKTGKILWSYDTGA--TIYGGASVS 350 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~-W~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~g~l~~ld~~tG~ilw~~~~~~--~~~~~p~~~ 350 (382)
...|+.+|+.+|+.. |+.-.........++.-+++.+|+.+.. ..+.|+.+|.++++..|+.-++. .........
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~ 372 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA 372 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred cceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence 457999999988433 3322211111233344467777777641 14569999998753234332222 233444556
Q ss_pred CCEEEEEeCceeEeecCCccC
Q 040693 351 NGCIYMGNGYKVTVGFGNKNF 371 (382)
Q Consensus 351 ~g~lyv~~~~g~~~~~~~~~~ 371 (382)
+++|++....+....++.++.
T Consensus 373 ~~~lv~~~~~dg~~~l~~~~~ 393 (741)
T 1yr2_A 373 GNRLFASYIHDAKSQVLAFDL 393 (741)
T ss_dssp BTEEEEEEEETTEEEEEEEET
T ss_pred CCEEEEEEEECCEEEEEEEeC
Confidence 778777765444444554443
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.51 Score=43.37 Aligned_cols=23 Identities=9% Similarity=0.318 Sum_probs=18.6
Q ss_pred ecEEEEEccCcEEEEEeCCCCCe
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSL 227 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~ 227 (382)
+..|++++.|+.+..+|..+++.
T Consensus 117 ~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 117 GNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp SSEEEEEETTSCEEEEEECTTSC
T ss_pred CCEEEEEECCCeEEEEECCCCCC
Confidence 46788888899999999887753
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.41 Score=46.08 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=31.6
Q ss_pred CEEEEeeecCCCcEEEEeCCCCcEeEEEecC-----C---c------eecce---EEe--CCEEEEEeCcee
Q 040693 310 GVLFGGSTYRQGPIYAMDVKTGKILWSYDTG-----A---T------IYGGA---SVS--NGCIYMGNGYKV 362 (382)
Q Consensus 310 ~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~-----~---~------~~~~p---~~~--~g~lyv~~~~g~ 362 (382)
+.+|++.. ..++|..||+ +|++.-..-.+ + + .+..| ++. ++.|||+.....
T Consensus 352 g~lyvaD~-~n~~I~~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~ 421 (430)
T 3tc9_A 352 YDFYFCDR-ENHCIRILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENR 421 (430)
T ss_dssp EEEEEEEG-GGTEEEEECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGT
T ss_pred CeEEEEEC-CCcEEEEECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCC
Confidence 68888875 5678999995 58765544321 0 0 12233 344 589999976533
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.71 Score=42.11 Aligned_cols=104 Identities=10% Similarity=0.124 Sum_probs=52.9
Q ss_pred ecEEEEEccCcEEEEEeCCCC--CeeeeeccCCCCCCCCcccceee--e--CCeEEEEecCccccccccCCCCCCCCCce
Q 040693 205 HDIVVAVQKSGFAWALDRDSG--SLIWSMEAGPGGLGGGAMWGAAT--D--ERRIYTNIANSQHKNFNLKPSKNSTIAGG 278 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG--~~~W~~~~~~~~~~g~~~~~~~~--~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~ 278 (382)
+..|++++.|+.+..+|..++ +.+-.+..- ....+.... + ...+..+ ..++.
T Consensus 165 ~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~-----------------s~D~~ 222 (330)
T 2hes_X 165 EALLASSSYDDTVRIWKDYDDDWECVAVLNGH-----EGTVWSSDFDKTEGVFRLCSG-----------------SDDST 222 (330)
T ss_dssp SSEEEEEETTSCEEEEEEETTEEEEEEEECCC-----SSCEEEEEECCSSSSCEEEEE-----------------ETTSC
T ss_pred CCEEEEEcCCCeEEEEECCCCCeeEEEEccCC-----CCcEEEEEecCCCCeeEEEEE-----------------eCCCe
Confidence 457888888998888887665 233322211 112222222 1 1233333 23467
Q ss_pred EEEEECCCC----cEEeeec--CCC-CCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCc
Q 040693 279 WVAMDASNG----NVLWSTA--DPS-NGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGK 332 (382)
Q Consensus 279 v~a~d~~tG----~~~W~~~--~~~-~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ 332 (382)
|..+|..++ +..|... ... -......+.. .+++++.++ .++.|..+|..+|+
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~--~dg~v~iw~~~~~~ 282 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVG--ADGVLAVYEEVDGE 282 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEE--TTSCEEEEEEETTE
T ss_pred EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEe--CCCEEEEEEcCCCc
Confidence 777777654 3344322 111 0001112222 245566666 48999999988774
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.39 Score=43.09 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=18.6
Q ss_pred ecEEEEEccCcEEEEEeCCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGS 226 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~ 226 (382)
+..|+.++.|+.+..+|..+|+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~ 88 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGR 88 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSC
T ss_pred CCEEEEEcCCCEEEEEEcCCCc
Confidence 4678888999999999998875
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.78 Score=41.93 Aligned_cols=111 Identities=15% Similarity=0.050 Sum_probs=62.0
Q ss_pred cEEEEEcc-C-cEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee--CCeEEEEecCccccccccCCCCCCCCCceEEE
Q 040693 206 DIVVAVQK-S-GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVA 281 (382)
Q Consensus 206 ~~v~~~~~-~-g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a 281 (382)
+.||+... . +.|+.++.+ |+..-.+-... .....+.+++ ++.||+... ..+.|..
T Consensus 132 g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~~----~~~P~gla~d~~~~~lY~~D~----------------~~~~I~~ 190 (316)
T 1ijq_A 132 GFMYWTDWGTPAKIKKGGLN-GVDIYSLVTEN----IQWPNGITLDLLSGRLYWVDS----------------KLHSISS 190 (316)
T ss_dssp TEEEEEECSSSCEEEEEETT-SCCEEEEECSS----CSCEEEEEEETTTTEEEEEET----------------TTTEEEE
T ss_pred CEEEEEccCCCCeEEEEcCC-CCCeEEEEECC----CCCceEEEEeccCCEEEEEEC----------------CCCeEEE
Confidence 45555443 2 678888765 54432221110 1122233443 789998732 3467999
Q ss_pred EECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEe
Q 040693 282 MDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYD 338 (382)
Q Consensus 282 ~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~ 338 (382)
+|.......--............+.++++.+|++.. ..+.|+.+|..+|+.+-.+.
T Consensus 191 ~d~dg~~~~~~~~~~~~~~~P~giav~~~~ly~~d~-~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 191 IDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI-INEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEET-TTTEEEEEETTTCCCCEEEE
T ss_pred EecCCCceEEEeecCCccCCcEEEEEECCEEEEEEC-CCCeEEEEeCCCCcceEEEe
Confidence 998643322111211111112234567889999874 67899999998898765554
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.11 E-value=0.12 Score=46.98 Aligned_cols=141 Identities=15% Similarity=0.133 Sum_probs=76.4
Q ss_pred EEEE-ccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 208 VVAV-QKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 208 v~~~-~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
||+. ..++.|+.+|.++ +..-....+ ....+.++ .++.+|+.... .....|+.+|.+
T Consensus 45 lyv~d~~~~~I~~~d~~g-~~~~~~~~~------~~p~gia~~~dG~l~vad~~--------------~~~~~v~~~d~~ 103 (306)
T 2p4o_A 45 IFVTNHEVGEIVSITPDG-NQQIHATVE------GKVSGLAFTSNGDLVATGWN--------------ADSIPVVSLVKS 103 (306)
T ss_dssp EEEEETTTTEEEEECTTC-CEEEEEECS------SEEEEEEECTTSCEEEEEEC--------------TTSCEEEEEECT
T ss_pred EEEEeCCCCeEEEECCCC-ceEEEEeCC------CCceeEEEcCCCcEEEEecc--------------CCcceEEEEcCC
Confidence 4444 4678899999875 443333321 12223333 34567876422 112358899999
Q ss_pred CCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCc-EeEEEec------C-Cc--eecceEEeCCEEE
Q 040693 286 NGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGK-ILWSYDT------G-AT--IYGGASVSNGCIY 355 (382)
Q Consensus 286 tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~-ilw~~~~------~-~~--~~~~p~~~~g~ly 355 (382)
+|+.......+......+.....++.+|+... ..+.|+.+|..+++ .+|.... . .. .-......++.||
T Consensus 104 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~-~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~ly 182 (306)
T 2p4o_A 104 DGTVETLLTLPDAIFLNGITPLSDTQYLTADS-YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLY 182 (306)
T ss_dssp TSCEEEEEECTTCSCEEEEEESSSSEEEEEET-TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEE
T ss_pred CCeEEEEEeCCCccccCcccccCCCcEEEEEC-CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEE
Confidence 99876554443211112222234567888763 47899999998764 2332211 0 11 1111233567899
Q ss_pred EEeCceeEeecCCcc
Q 040693 356 MGNGYKVTVGFGNKN 370 (382)
Q Consensus 356 v~~~~g~~~~~~~~~ 370 (382)
++......+..|.++
T Consensus 183 v~d~~~~~I~~~~~~ 197 (306)
T 2p4o_A 183 VSNTEKMLLLRIPVD 197 (306)
T ss_dssp EEETTTTEEEEEEBC
T ss_pred EEeCCCCEEEEEEeC
Confidence 998765544445444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=1.5 Score=44.42 Aligned_cols=144 Identities=12% Similarity=-0.069 Sum_probs=76.4
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeee--CCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.+.++....+.+..++.+ |+..-..-.. ......+.+++ .+.+|++... ..+.|..++
T Consensus 93 ~LY~tD~~~~~I~v~~~d-G~~~~~l~~~----~l~~P~~iavdp~~G~lY~tD~g---------------~~~~I~r~~ 152 (628)
T 4a0p_A 93 NLYWADTGTNRIEVSKLD-GQHRQVLVWK----DLDSPRALALDPAEGFMYWTEWG---------------GKPKIDRAA 152 (628)
T ss_dssp EEEEEETTTTEEEEEETT-STTCEEEECS----SCCCEEEEEEETTTTEEEEEECS---------------SSCEEEEEE
T ss_pred EEEEEECCCCEEEEEecC-CCcEEEEEeC----CCCCcccEEEccCCCeEEEeCCC---------------CCCEEEEEe
Confidence 333444556788888876 4322111100 00122344444 6889987422 135688877
Q ss_pred CCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCce
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYK 361 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g 361 (382)
.......--.. . ......++++ ++++|++.. ..+.|..+|.+.+.. --+......-...++.+++||++....
T Consensus 153 ~dG~~~~~l~~-~--~~~P~GlalD~~~~~LY~aD~-~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~~~ly~tD~~~ 227 (628)
T 4a0p_A 153 MDGSERTTLVP-N--VGRANGLTIDYAKRRLYWTDL-DTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQDYIYWTDWSR 227 (628)
T ss_dssp TTSCSCEEEEC-S--CSSEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSC-EEEEECCSCEEEEEEETTEEEEEETTT
T ss_pred CCCCceEEEEC-C--CCCcceEEEccccCEEEEEEC-CCCEEEEEcCCCCce-EEeeccCCCceEEEEECCEEEEecCCC
Confidence 75443221122 1 1122334555 689999875 568899999874332 111111122235567889999998643
Q ss_pred eEeecCCccCCCCCe
Q 040693 362 VTVGFGNKNFTSGTS 376 (382)
Q Consensus 362 ~~~~~~~~~~~~g~~ 376 (382)
.. ++.+|..+|+.
T Consensus 228 ~~--I~~~dk~tg~~ 240 (628)
T 4a0p_A 228 RS--IERANKTSGQN 240 (628)
T ss_dssp TE--EEEEETTTCCS
T ss_pred CE--EEEEECCCCCc
Confidence 32 35566666653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.56 Score=50.41 Aligned_cols=128 Identities=11% Similarity=0.039 Sum_probs=67.4
Q ss_pred cEEEEEccCcEEE-EEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVVAVQKSGFAW-ALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~~~~~~g~l~-ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
..++....+..++ .+|..+++..-- . .. ......+.+ ++..|++. ...+.|+.+
T Consensus 349 ~~l~~~s~~~~l~~~~d~~~~~~~~l-~-~~----~~~~~~~~~SpDG~~la~~-----------------~~~~~v~~~ 405 (1045)
T 1k32_A 349 VAFIHGTREGDFLGIYDYRTGKAEKF-E-EN----LGNVFAMGVDRNGKFAVVA-----------------NDRFEIMTV 405 (1045)
T ss_dssp EEEEEEETTEEEEEEEETTTCCEEEC-C-CC----CCSEEEEEECTTSSEEEEE-----------------ETTSEEEEE
T ss_pred CeEEEEECCCceEEEEECCCCCceEe-c-CC----ccceeeeEECCCCCEEEEE-----------------CCCCeEEEE
Confidence 3444444477888 899988765322 2 11 012222222 55666554 234689999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecC--------CCcEEEEeCCCCcEeEEEecCCceecceEE--e
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYR--------QGPIYAMDVKTGKILWSYDTGATIYGGASV--S 350 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~--------~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~ 350 (382)
|+++|+..-......... ..+.. ++..+....... .+.|+.+|.++|+ +.+..........+.. .
T Consensus 406 d~~tg~~~~~~~~~~~~v--~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spd 482 (1045)
T 1k32_A 406 DLETGKPTVIERSREAMI--TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDAD 482 (1045)
T ss_dssp ETTTCCEEEEEECSSSCC--CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTT
T ss_pred ECCCCceEEeccCCCCCc--cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCC
Confidence 999999876664332211 22223 334454443201 2489999999887 3333222222233433 3
Q ss_pred CCEEEEEeC
Q 040693 351 NGCIYMGNG 359 (382)
Q Consensus 351 ~g~lyv~~~ 359 (382)
+.+||+.+.
T Consensus 483 G~~l~~~s~ 491 (1045)
T 1k32_A 483 SKNLYYLSY 491 (1045)
T ss_dssp SCEEEEEES
T ss_pred CCEEEEEec
Confidence 445666655
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=96.01 E-value=0.54 Score=48.39 Aligned_cols=82 Identities=10% Similarity=0.150 Sum_probs=40.2
Q ss_pred ceEEEEECCCCcEEeeec--------CCCCCCC----CcceEEeC-CEEE-EeeecCC--CcEEEEeCCCCcEeEEEecC
Q 040693 277 GGWVAMDASNGNVLWSTA--------DPSNGTA----PGPVTVAN-GVLF-GGSTYRQ--GPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~--------~~~~~~~----~~~~~~~~-~~v~-~~~~~~~--g~l~~ld~~tG~ilw~~~~~ 340 (382)
..|..+|+++|+..|... ....... ..+....+ ..++ ..+. ++ ..|+.+|.++++... ...+
T Consensus 285 ~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~-~~G~~~l~~~~~~~~~~~~-lT~g 362 (740)
T 4a5s_A 285 SVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISN-EEGYRHICYFQIDKKDCTF-ITKG 362 (740)
T ss_dssp EEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEEC-TTSCEEEEEEETTCSSCEE-SCCS
T ss_pred EEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEc-CCCceEEEEEECCCCceEe-cccC
Confidence 469999999998333211 1111111 13332334 3433 4442 23 469999998776542 2222
Q ss_pred C-ceecceEEeCCEEEEEeCc
Q 040693 341 A-TIYGGASVSNGCIYMGNGY 360 (382)
Q Consensus 341 ~-~~~~~p~~~~g~lyv~~~~ 360 (382)
. .+.......+++||..+..
T Consensus 363 ~~~v~~~~~~d~~~i~f~~~~ 383 (740)
T 4a5s_A 363 TWEVIGIEALTSDYLYYISNE 383 (740)
T ss_dssp SSCEEEEEEECSSEEEEEESC
T ss_pred CEEEEEEEEEeCCEEEEEEec
Confidence 1 1222222446677776554
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.75 Score=41.94 Aligned_cols=20 Identities=10% Similarity=0.290 Sum_probs=16.2
Q ss_pred ecEEEEEccCcEEEEEeCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDS 224 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~t 224 (382)
+..|++++.|+.+..+|..+
T Consensus 119 g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 119 GYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp SCEEEEEETTSCEEEEECCT
T ss_pred CCEEEEEeCCCEEEEEeccC
Confidence 35788888899999999853
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=95.72 E-value=1.1 Score=40.14 Aligned_cols=94 Identities=10% Similarity=-0.006 Sum_probs=46.1
Q ss_pred CCceEEEEECCCCcEEeeec--CCCCCCCCcceEEe-C----CEEEEeeecCCCcEEEEeCCCCcEeEEEecC--C---c
Q 040693 275 IAGGWVAMDASNGNVLWSTA--DPSNGTAPGPVTVA-N----GVLFGGSTYRQGPIYAMDVKTGKILWSYDTG--A---T 342 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~~W~~~--~~~~~~~~~~~~~~-~----~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~--~---~ 342 (382)
.++.|..+|.++++..|... +..-......+.+. + .++..++ .++.|...|.++++..|+...- . .
T Consensus 178 ~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s--~D~~v~iWd~~~~~~~~~~~~~~~~~~~~ 255 (297)
T 2pm7_B 178 ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVS--QDRTCIIWTQDNEQGPWKKTLLKEEKFPD 255 (297)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEE--TTSCEEEEEESSTTSCCEEEESSSSCCSS
T ss_pred CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEE--CCCcEEEEEeCCCCCccceeeeecccCCC
Confidence 45789999998887444321 21100111222222 2 2344444 5899999998876544433221 1 1
Q ss_pred eecceEE-eCCEEEE-EeCceeEeecCCccC
Q 040693 343 IYGGASV-SNGCIYM-GNGYKVTVGFGNKNF 371 (382)
Q Consensus 343 ~~~~p~~-~~g~lyv-~~~~g~~~~~~~~~~ 371 (382)
....... .++++++ ++.+| .+.+|..+.
T Consensus 256 ~v~~~~~s~~g~~las~~~D~-~v~lw~~~~ 285 (297)
T 2pm7_B 256 VLWRASWSLSGNVLALSGGDN-KVTLWKENL 285 (297)
T ss_dssp CEEEEEECSSSCCEEEEETTS-CEEEEEECT
T ss_pred cEEEEEECCCCCEEEEEcCCC-cEEEEEECC
Confidence 1112222 2455554 44454 466776553
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=95.72 E-value=1.5 Score=41.70 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=47.5
Q ss_pred eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee-cCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEe
Q 040693 249 DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST-ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMD 327 (382)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld 327 (382)
+++.||++.. ....|..+|.. |+.+... ...........+.+.++.+|++.. ..+.|+.+|
T Consensus 256 ~~~~lY~aD~----------------~~~~I~~~d~d-G~~~~~~~~~~~~l~~P~gl~v~~~~lywtd~-~~~~V~~~~ 317 (400)
T 3p5b_L 256 LSGRLYWVDS----------------KLHSISSIDVN-GGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI-INEAIFSAN 317 (400)
T ss_dssp TTTEEEEEET----------------TTTEEEEEETT-SCCCEEEEECSSTTSSEEEEEEETTEEEEEES-SSCSEEEEE
T ss_pred CCCEEEEEEC----------------CCCEEEEEeCC-CCccEEEEeCCCCCCCCEEEEEeCCEEEEecC-CCCeEEEEE
Confidence 3788998732 34679999985 4333333 221111122245567888888874 678999999
Q ss_pred CCCCcEeEEEecC
Q 040693 328 VKTGKILWSYDTG 340 (382)
Q Consensus 328 ~~tG~ilw~~~~~ 340 (382)
..+|+.+-.+..+
T Consensus 318 ~~~G~~~~~i~~~ 330 (400)
T 3p5b_L 318 RLTGSDVNLLAEN 330 (400)
T ss_dssp SSSCCCCEEEECS
T ss_pred cCCCCceEEEecC
Confidence 9899887766543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=2.1 Score=43.61 Aligned_cols=84 Identities=11% Similarity=0.055 Sum_probs=48.5
Q ss_pred ceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecC--CCcEEEEeCCCCcE-eEEEecCC--ceecceEEeC
Q 040693 277 GGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYR--QGPIYAMDVKTGKI-LWSYDTGA--TIYGGASVSN 351 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~g~l~~ld~~tG~i-lw~~~~~~--~~~~~p~~~~ 351 (382)
+.++.+|+.+++..|+.-.........++..+++.+|+.+... .+.|+.+|+++++. .|+.=++. ... +....+
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~s~~g 337 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-TVHSGS 337 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE-EEEEET
T ss_pred cEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE-EEEEEC
Confidence 5799999988864444322211112233445677777776411 36899999998764 45532222 233 555566
Q ss_pred CEEEEEeCce
Q 040693 352 GCIYMGNGYK 361 (382)
Q Consensus 352 g~lyv~~~~g 361 (382)
+.|++....+
T Consensus 338 ~~lv~~~~~~ 347 (693)
T 3iuj_A 338 GYLFAEYMVD 347 (693)
T ss_dssp TEEEEEEEET
T ss_pred CEEEEEEEEC
Confidence 7776665433
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.66 Score=42.59 Aligned_cols=106 Identities=5% Similarity=-0.048 Sum_probs=56.8
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..|+++..|+.+..+|..+++..-...... .......... ++..++.+ ..++.|..+
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~---h~~~v~~v~~sp~~~~l~s~-----------------s~D~~v~iw 132 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDFECVTTLEG---HENEVKSVAWAPSGNLLATC-----------------SRDKSVWVW 132 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-EEEEEEECC---CSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEE
T ss_pred CCEEEEEECCCcEEEEEccCCCeEEEEEccC---CCCCceEEEEeCCCCEEEEE-----------------ECCCeEEEE
Confidence 3678888889988888887775332222211 0111222222 44555554 345788999
Q ss_pred ECCCCcEEe---eecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEe
Q 040693 283 DASNGNVLW---STADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKIL 334 (382)
Q Consensus 283 d~~tG~~~W---~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~il 334 (382)
|+.+++..- ....... ....+.. ++.+++.++ .++.|..+|..+++..
T Consensus 133 d~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~s--~d~~i~~w~~~~~~~~ 185 (345)
T 3fm0_A 133 EVDEEDEYECVSVLNSHTQ--DVKHVVWHPSQELLASAS--YDDTVKLYREEEDDWV 185 (345)
T ss_dssp EECTTSCEEEEEEECCCCS--CEEEEEECSSSSCEEEEE--TTSCEEEEEEETTEEE
T ss_pred ECCCCCCeEEEEEecCcCC--CeEEEEECCCCCEEEEEe--CCCcEEEEEecCCCEE
Confidence 988775322 1221111 1112222 234566666 4889999998877643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=95.43 E-value=1.4 Score=39.77 Aligned_cols=21 Identities=14% Similarity=-0.009 Sum_probs=16.8
Q ss_pred ecEEEEEccCcEEEEEeCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSG 225 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG 225 (382)
+..+.++..|+.+..+|..++
T Consensus 117 g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 117 GLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp CSCEEEECSSSCEEEEEECSS
T ss_pred CcEEEEEcCCCCEEEEecCCC
Confidence 356778888999999998765
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.34 E-value=1.8 Score=43.90 Aligned_cols=133 Identities=9% Similarity=-0.017 Sum_probs=62.9
Q ss_pred cEEEEEeCCCCCeeeeeccCCC--CCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 215 GFAWALDRDSGSLIWSMEAGPG--GLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~~~~--~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
..+..+|+++++ |+.-.... ........+....++.+|+.... ++..+.. .....+..+|+++.+ |.
T Consensus 314 ~~~e~yd~~t~~--W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~-~g~~~~~------~~~~~v~~yd~~~~~--w~ 382 (656)
T 1k3i_A 314 KNGEVYSPSSKT--WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK-KGSVFQA------GPSTAMNWYYTSGSG--DV 382 (656)
T ss_dssp CCEEEEETTTTE--EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECG-GGCEEEC------CSSSEEEEEECSTTC--EE
T ss_pred ccceEeCCCCCc--ceeCCCccccccccccccceeecCCceEEEECC-CCcEEEe------cCccceeeeecCCcc--ee
Confidence 458899998764 87642110 00000111222234555544322 1111111 123578999998764 33
Q ss_pred ecCCCC---------CCCCcceEE--eCCEEEEeeecC-------CC---cEEEEeCCCCcEeEEEe----cCCc-eecc
Q 040693 293 TADPSN---------GTAPGPVTV--ANGVLFGGSTYR-------QG---PIYAMDVKTGKILWSYD----TGAT-IYGG 346 (382)
Q Consensus 293 ~~~~~~---------~~~~~~~~~--~~~~v~~~~~~~-------~g---~l~~ld~~tG~ilw~~~----~~~~-~~~~ 346 (382)
...... ......+.+ .++.+|+..... .. .+.++|+++.+ |+.. ++.+ ...+
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~mp~~R~~~~ 460 (656)
T 1k3i_A 383 KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP--NTVFASNGLYFARTFHT 460 (656)
T ss_dssp EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC--EEEECTTCCSSCCBSCE
T ss_pred ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC--eeEEccCCCCCCcccCC
Confidence 222111 112223322 367777654210 01 57778877655 6543 2322 3334
Q ss_pred eEEe-CCEEEEEeCc
Q 040693 347 ASVS-NGCIYMGNGY 360 (382)
Q Consensus 347 p~~~-~g~lyv~~~~ 360 (382)
.++. +++|||..+.
T Consensus 461 ~~~l~~g~i~v~GG~ 475 (656)
T 1k3i_A 461 SVVLPDGSTFITGGQ 475 (656)
T ss_dssp EEECTTSCEEEECCB
T ss_pred eEECCCCCEEEECCc
Confidence 3444 9999998764
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.021 Score=58.49 Aligned_cols=69 Identities=16% Similarity=0.175 Sum_probs=41.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|.++|+.+=......... ....++.+.+++..|+++.....
T Consensus 35 d~~i~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~SpDg~~la~~~~~~~---------------------- 82 (719)
T 1z68_A 35 DNNIVLYNIETGQSYTILSNRTMKS----------VNASNYGLSPDRQFVYLESDYSK---------------------- 82 (719)
T ss_dssp TSCEEEEESSSCCEEEEECHHHHHT----------TTCSEEEECTTSSEEEEEEEEEE----------------------
T ss_pred CCCEEEEEcCCCcEEEEEccccccc----------cceeeEEECCCCCeEEEEecCce----------------------
Confidence 7789999999998754433210000 00125778888888877654100
Q ss_pred CCCCCCCCcceEEEEECCCCcEE
Q 040693 134 KCIEPENHSNSLLALDLDTGKIV 156 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~ 156 (382)
..--..++.|+.+|.++|+.+
T Consensus 83 --~~~~s~~~~i~~~d~~~g~~~ 103 (719)
T 1z68_A 83 --LWRYSYTATYYIYDLSNGEFV 103 (719)
T ss_dssp --CSSSCEEEEEEEEETTTTEEC
T ss_pred --eEEeecceEEEEEECCCCccc
Confidence 000012378999999999874
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.31 E-value=1.5 Score=39.07 Aligned_cols=186 Identities=8% Similarity=0.058 Sum_probs=100.8
Q ss_pred ceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCccccccccc
Q 040693 94 PSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNW 173 (382)
Q Consensus 94 ~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~ 173 (382)
.+++++++.+|+.... .+.|+.||+. |+++.+.+.......
T Consensus 32 la~~~~~~~L~aV~d~--------------------------------~~~I~~ld~~-g~v~~~i~l~g~~D~------ 72 (255)
T 3qqz_A 32 LTWSAQSNTLFSTINK--------------------------------PAAIVEMTTN-GDLIRTIPLDFVKDL------ 72 (255)
T ss_dssp EEEETTTTEEEEEEET--------------------------------TEEEEEEETT-CCEEEEEECSSCSSE------
T ss_pred eEEeCCCCEEEEEECC--------------------------------CCeEEEEeCC-CCEEEEEecCCCCCh------
Confidence 5677777888886653 3899999987 999998877532110
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCC-C--C-CCCCcccceee-
Q 040693 174 YLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGP-G--G-LGGGAMWGAAT- 248 (382)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~-~--~-~~g~~~~~~~~- 248 (382)
..+...+ .+..+++...++.++.++..+...+|...... + . ......-+.++
T Consensus 73 ----------------------EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d 129 (255)
T 3qqz_A 73 ----------------------ETIEYIG-DNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYS 129 (255)
T ss_dssp ----------------------EEEEECS-TTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEE
T ss_pred ----------------------HHeEEeC-CCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEe
Confidence 1111111 12333455566778877765544444332111 0 0 00111233344
Q ss_pred -eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC-CC---cEE----eeecCCCCCCCCcceEEe--CCEEEEeee
Q 040693 249 -DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS-NG---NVL----WSTADPSNGTAPGPVTVA--NGVLFGGST 317 (382)
Q Consensus 249 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~-tG---~~~----W~~~~~~~~~~~~~~~~~--~~~v~~~~~ 317 (382)
.++.+|+..... ...|+.++-. ++ ++. +..... ....+.+.++ .+.+|+.+.
T Consensus 130 ~~~~~L~va~E~~---------------p~~i~~~~g~~~~~~l~i~~~~~~~~~~~--~~d~S~l~~dp~tg~lliLS~ 192 (255)
T 3qqz_A 130 RQDHTFWFFKEKN---------------PIEVYKVNGLLSSNELHISKDKALQRQFT--LDDVSGAEFNQQKNTLLVLSH 192 (255)
T ss_dssp TTTTEEEEEEESS---------------SEEEEEEESTTCSSCCEEEECHHHHHTCC--SSCCCEEEEETTTTEEEEEET
T ss_pred CCCCEEEEEECcC---------------CceEEEEcccccCCceeeecchhhccccc--cCCceeEEEcCCCCeEEEEEC
Confidence 355788864321 1246666611 11 111 110111 1123455555 367888774
Q ss_pred cCCCcEEEEeCCCCcEeEEEecCCcee---------cceEE-eCCEEEEEeCc
Q 040693 318 YRQGPIYAMDVKTGKILWSYDTGATIY---------GGASV-SNGCIYMGNGY 360 (382)
Q Consensus 318 ~~~g~l~~ld~~tG~ilw~~~~~~~~~---------~~p~~-~~g~lyv~~~~ 360 (382)
....|..+|.+ |+++-.+.+..+.. -..++ .+|+|||++.-
T Consensus 193 -~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~ 243 (255)
T 3qqz_A 193 -ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEP 243 (255)
T ss_dssp -TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETT
T ss_pred -CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCC
Confidence 56789999976 88988888875321 12233 57899999764
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=2.7 Score=42.00 Aligned_cols=110 Identities=10% Similarity=0.013 Sum_probs=63.7
Q ss_pred ecEEEEEccCcEEEEEeCCCCCe-------eeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSL-------IWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIA 276 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~-------~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 276 (382)
+..|++++.||.+..+|..+++. +-.++....+ ........+. .++ +.++ ..+
T Consensus 141 G~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h~~~V~sVawSPdg-Laas-----------------s~D 201 (588)
T 2j04_A 141 ESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG-SKDWVTHIVWYEDV-LVAA-----------------LSN 201 (588)
T ss_dssp SSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT-CCCCEEEEEEETTE-EEEE-----------------ETT
T ss_pred CCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc-ccccEEEEEEcCCc-EEEE-----------------eCC
Confidence 47888899999999999998863 3333322110 0011222222 233 3333 235
Q ss_pred ceEEEEECCCCcE--Eeee--cCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcE-eEEEe
Q 040693 277 GGWVAMDASNGNV--LWST--ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKI-LWSYD 338 (382)
Q Consensus 277 g~v~a~d~~tG~~--~W~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~i-lw~~~ 338 (382)
+.+..+|+.+++. .|+. .... .....+...++.+..+. ++.|...|.++++. ..+..
T Consensus 202 ~tVrlWd~~~~~~~~~~~tL~~~h~--~~V~svaFsg~~LASa~---~~tIkLWd~~~~~~~~~~~g 263 (588)
T 2j04_A 202 NSVFSMTVSASSHQPVSRMIQNASR--RKITDLKIVDYKVVLTC---PGYVHKIDLKNYSISSLKTG 263 (588)
T ss_dssp CCEEEECCCSSSSCCCEEEEECCCS--SCCCCEEEETTEEEEEC---SSEEEEEETTTTEEEEEECS
T ss_pred CeEEEEECCCCccccceeeeccccc--CcEEEEEEECCEEEEEe---CCeEEEEECCCCeEEEEEcC
Confidence 7899999988874 2333 1221 12223333356666554 68999999998888 55543
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.54 Score=46.53 Aligned_cols=141 Identities=12% Similarity=0.084 Sum_probs=73.4
Q ss_pred cEEEEEccCcEEEEEeCCCCCe-eeeeccCCCCCCCCcccce--ee-eCC-eEEEEecCccccccccCCCCCCCCCceEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSL-IWSMEAGPGGLGGGAMWGA--AT-DER-RIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~g~~~~~~--~~-~~~-~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
..|++++.||.+..+|..+++. ......-. ...... .. .++ .++++. ..+++|.
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~-----~~V~sv~~~~s~~g~~~laS~----------------S~D~tvk 336 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHD-----SYILSVSTAYSDFEDTVVSTV----------------AVDGYFY 336 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSSCSEEEECSS-----SCEEEEEEECCTTSCCEEEEE----------------ETTSEEE
T ss_pred CeEEEEeCCCEEEEEECCCCCCceEEeeccc-----ccEEEEEEEcCCCCCeEEEEe----------------ccCCeEE
Confidence 4788999999999999998743 22232111 112222 11 222 444432 3468899
Q ss_pred EEECCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEE
Q 040693 281 AMDASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMG 357 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~ 357 (382)
.+|+++++..-.............+.+. +..+..++ .++.|..+|..+++.+..+.-......+... .+++++++
T Consensus 337 lWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~S 414 (524)
T 2j04_B 337 IFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLA 414 (524)
T ss_dssp EECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEE
T ss_pred EEECCCCCcccccccccccCcccceEeCCCcCeEEEeC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEE
Confidence 9999988754332211100011223333 23444444 4778999999999876655432222222222 24444444
Q ss_pred eCceeEeecCCc
Q 040693 358 NGYKVTVGFGNK 369 (382)
Q Consensus 358 ~~~g~~~~~~~~ 369 (382)
.+.+..+.+|..
T Consensus 415 gs~Dgtv~lwd~ 426 (524)
T 2j04_B 415 GSADGSLIITNA 426 (524)
T ss_dssp EETTTEEECCBS
T ss_pred EECCCEEEEEec
Confidence 443344555543
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=94.89 E-value=3.8 Score=41.61 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=50.6
Q ss_pred CceEEEEECCCCcE-EeeecCCCC-CCCCcceEEeCCEEEEeeecCC--CcEEEEeCCCCcEeEEEecC-CceecceEE-
Q 040693 276 AGGWVAMDASNGNV-LWSTADPSN-GTAPGPVTVANGVLFGGSTYRQ--GPIYAMDVKTGKILWSYDTG-ATIYGGASV- 349 (382)
Q Consensus 276 ~g~v~a~d~~tG~~-~W~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~--g~l~~ld~~tG~ilw~~~~~-~~~~~~p~~- 349 (382)
.+.|+.+|+.+++. .|+.-.+.. ......+...++.+++... .+ .+|+.+|.+ |+.+.+...+ ......+..
T Consensus 294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~-~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s 371 (695)
T 2bkl_A 294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYL-KDATSEVRVATLK-GKPVRTVQLPGVGAASNLMGL 371 (695)
T ss_dssp TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEE-ETTEEEEEEEETT-CCEEEECCCSSSSEECCCBSC
T ss_pred CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEE-ECCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecC
Confidence 47899999988863 355433321 1111222334555554432 23 368888875 6665555544 222222222
Q ss_pred -eCCEEEEEeC-ceeEeecCCccCCCCCe
Q 040693 350 -SNGCIYMGNG-YKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 350 -~~g~lyv~~~-~g~~~~~~~~~~~~g~~ 376 (382)
.+..+++..+ ...-..+|..|..+|+.
T Consensus 372 ~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 372 EDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp TTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred CCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 3446665433 22223456667777764
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=4.1 Score=43.60 Aligned_cols=54 Identities=11% Similarity=-0.004 Sum_probs=33.2
Q ss_pred eceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEE
Q 040693 25 MSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVY 104 (382)
Q Consensus 25 ~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~ 104 (382)
..|.+.++.+++.. .+.|+.+|.++|+.. +....+ .. ...+.+.+++..|+
T Consensus 18 ~~~~~S~~~iaf~~---------------~~~l~~~~~~gg~~~-~lt~~~-----------~~--v~~~~~SPDG~~la 68 (1045)
T 1k32_A 18 LNPDIHGDRIIFVC---------------CDDLWEHDLKSGSTR-KIVSNL-----------GV--INNARFFPDGRKIA 68 (1045)
T ss_dssp EEEEEETTEEEEEE---------------TTEEEEEETTTCCEE-EEECSS-----------SE--EEEEEECTTSSEEE
T ss_pred eCcEEeCCEEEEEE---------------CCcEEEEECCCCcEE-EeeeCC-----------Cc--ccCeEECCCCCEEE
Confidence 35666667666655 457999999888753 222110 01 13578888888777
Q ss_pred EEc
Q 040693 105 IAT 107 (382)
Q Consensus 105 v~~ 107 (382)
+..
T Consensus 69 ~~s 71 (1045)
T 1k32_A 69 IRV 71 (1045)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=3.1 Score=38.93 Aligned_cols=95 Identities=17% Similarity=0.161 Sum_probs=51.9
Q ss_pred eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC-CCcEEee--ecCCCCCCCCcceEEe--CCEEEEeeecCCCcE
Q 040693 249 DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS-NGNVLWS--TADPSNGTAPGPVTVA--NGVLFGGSTYRQGPI 323 (382)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~-tG~~~W~--~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l 323 (382)
|+..+|++. +..++|+++|.. +|+..=+ +..+. ...-+.++ +|.+|++.....++|
T Consensus 231 Dg~~lYvad----------------t~~~~I~~~~~~~~g~l~~~~~~~~~g---~PDGi~vD~e~G~lwva~~~~g~~v 291 (355)
T 3sre_A 231 DGKYVYIAE----------------LLAHKIHVYEKHANWTLTPLRVLSFDT---LVDNISVDPVTGDLWVGCHPNGMRI 291 (355)
T ss_dssp TSSEEEEEE----------------GGGTEEEEEEECTTSCEEEEEEEECSS---EEEEEEECTTTCCEEEEEESCHHHH
T ss_pred CCCEEEEEe----------------CCCCeEEEEEECCCCcEecCEEEeCCC---CCceEEEeCCCCcEEEEecCCceEE
Confidence 667899873 234779999875 4544221 12221 12234455 378888653122455
Q ss_pred EEEeCC--CCcEeEEEec--------------CCc---eecceEEeCCEEEEEeCcee
Q 040693 324 YAMDVK--TGKILWSYDT--------------GAT---IYGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 324 ~~ld~~--tG~ilw~~~~--------------~~~---~~~~p~~~~g~lyv~~~~g~ 362 (382)
..+|++ .|+.+++... .+. ..+..+..+++||+++-...
T Consensus 292 ~~~~P~~~~~s~v~rI~~~~~~~~~v~~v~~ddG~~l~~~T~a~~~~g~L~iGsv~~~ 349 (355)
T 3sre_A 292 FFYDAENPPGSEVLRIQDILSEEPKVTVVYAENGTVLQGSTVAAVYKGKLLIGTVFHK 349 (355)
T ss_dssp HSCCTTSCCCEEEEEEECTTSSSCEEEEEEEECSSSCCSEEEEEEETTEEEEEESSSC
T ss_pred EEECCCCCCCCEEEEEEccCCCCcEEEEEEEcCCCEEEeeEEEEEECCEEEEEEcCCC
Confidence 555554 3555555543 121 22334458899999876544
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=5 Score=40.49 Aligned_cols=146 Identities=11% Similarity=-0.026 Sum_probs=75.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+.+.++....+.+..+|.+ |+.+-..-... . ....+.++ .++.+|++... ..+.|..+
T Consensus 96 ~~ly~~d~~~~~I~v~~~d-G~~~~~l~~~~--l--~~P~~Iavdp~~g~ly~tD~g---------------~~~~I~r~ 155 (619)
T 3s94_A 96 EKLYWTDSETNRIEVSNLD-GSLRKVLFWQE--L--DQPRAIALDPSSGFMYWTDWG---------------EVPKIERA 155 (619)
T ss_dssp TEEEEEETTTTEEEEEETT-SCSCEEEECSS--C--SCCCCEEEETTTTEEEEEECS---------------SSCEEEEE
T ss_pred CEEEEEeCCCCEEEEEECC-CCCEEEEEeCC--C--CCCceEEEecCCCeEEEeccC---------------CCCEEEEE
Confidence 3344445566788888876 44322221110 1 12233444 46889987432 12567777
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEec-CCceecceEEeCCEEEEEeC
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDT-GATIYGGASVSNGCIYMGNG 359 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~-~~~~~~~p~~~~g~lyv~~~ 359 (382)
+.. |+.+-..-... ..+...++++ ++++|++.. ..+.|+.+|.+ |.....+-. ....-....+.+++||++..
T Consensus 156 ~~d-G~~~~~l~~~~-~~~P~Glald~~~~~LY~aD~-~~~~I~~~~~d-G~~~~~~~~~~~~~P~gi~~~~~~ly~td~ 231 (619)
T 3s94_A 156 GMD-GSSRFIIINSE-IYWPNGLTLDYEEQKLYWADA-KLNFIHKSNLD-GTNRQAVVKGSLPHPFALTLFEDILYWTDW 231 (619)
T ss_dssp ETT-SCSCEEEECSS-CSSEEEEEEETTTTEEEEEET-TTCCEEEESSS-CCEEC---------CCCEEESSSEEEEECT
T ss_pred ECC-CCceEEEEeCC-CCCCcEEEEEccCCEEEEEeC-CCCeEEEecCC-CCccEEEEeCCCCCceEEEEeCCEEEEecC
Confidence 764 33221111101 1122345555 689999875 56889999986 544443322 11122345667889999976
Q ss_pred ceeEeecCCccCCCCCe
Q 040693 360 YKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 360 ~g~~~~~~~~~~~~g~~ 376 (382)
... .+..+|..+|+.
T Consensus 232 ~~~--~V~~~d~~tg~~ 246 (619)
T 3s94_A 232 STH--SILACNKYTGEG 246 (619)
T ss_dssp TTC--SEEEEESSSCCC
T ss_pred CCC--EEEEEECCCCcc
Confidence 433 234566666653
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=94.18 E-value=3.7 Score=42.08 Aligned_cols=111 Identities=10% Similarity=0.030 Sum_probs=58.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|+.+|.+||+..=.... .... .+... ...+.+.+++..|++.....-
T Consensus 35 ~~~i~~~~~~~~~~~~~~~~--~~~~---~~~~~---~~~~~~Spdg~~l~~~~~~~~---------------------- 84 (740)
T 4a5s_A 35 ENNILVFNAEYGNSSVFLEN--STFD---EFGHS---INDYSISPDGQFILLEYNYVK---------------------- 84 (740)
T ss_dssp TTEEEEEETTTCCEEEEECT--TTTT---TCCSC---CCEEEECTTSSEEEEEEEEEE----------------------
T ss_pred CCcEEEEECCCCceEEEEec--hhhh---hhccc---ccceEECCCCCEEEEEECCee----------------------
Confidence 67899999999986421111 1000 00000 012566788888887765310
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.-.+..+.++.+|.++|+..- +.... ..-.....+++| ..++++ .
T Consensus 85 --~~r~~~~~~~~~~d~~~~~~~~---l~~~~-------------------------~~~~~~~~SPdG--~~la~~--~ 130 (740)
T 4a5s_A 85 --QWRHSYTASYDIYDLNKRQLIT---EERIP-------------------------NNTQWVTWSPVG--HKLAYV--W 130 (740)
T ss_dssp --CSSSCEEEEEEEEETTTTEECC---SSCCC-------------------------TTEEEEEECSST--TCEEEE--E
T ss_pred --eEEEccceEEEEEECCCCcEEE---cccCC-------------------------CcceeeEECCCC--CEEEEE--E
Confidence 0001223788999999987542 22110 111112234455 344444 3
Q ss_pred CcEEEEEeCCCCCee
Q 040693 214 SGFAWALDRDSGSLI 228 (382)
Q Consensus 214 ~g~l~ald~~tG~~~ 228 (382)
++.|+.+|..+|+..
T Consensus 131 ~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 131 NNDIYVKIEPNLPSY 145 (740)
T ss_dssp TTEEEEESSTTSCCE
T ss_pred CCeEEEEECCCCceE
Confidence 567999999988754
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=94.16 E-value=3.3 Score=37.83 Aligned_cols=112 Identities=14% Similarity=-0.005 Sum_probs=63.7
Q ss_pred ecEEEEEcc--CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVAVQK--SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~~~~--~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
++.||+... .+.|+.++.+ |+.+-..-... .....+.++ +++.||++.. ..+.|.
T Consensus 133 ~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~~----l~~Pnglavd~~~~~lY~aD~----------------~~~~I~ 191 (318)
T 3sov_A 133 SGFMYWTDWGEVPKIERAGMD-GSSRFIIINSE----IYWPNGLTLDYEEQKLYWADA----------------KLNFIH 191 (318)
T ss_dssp GTEEEEEECSSSCEEEEEETT-SCSCEEEECSS----CSCEEEEEEETTTTEEEEEET----------------TTTEEE
T ss_pred CCEEEEEecCCCCEEEEEEcC-CCCeEEEEECC----CCCccEEEEeccCCEEEEEEC----------------CCCEEE
Confidence 356666552 4678888865 54332221110 012233444 4788999732 346799
Q ss_pred EEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
.+|.......--..... .....+.++++.+|++.. ..+.|..+|+.+|+.+-.+..+
T Consensus 192 ~~d~dG~~~~~~~~~~~--~~P~glav~~~~lywtd~-~~~~V~~~~~~~G~~~~~i~~~ 248 (318)
T 3sov_A 192 KSNLDGTNRQAVVKGSL--PHPFALTLFEDILYWTDW-STHSILACNKYTGEGLREIHSD 248 (318)
T ss_dssp EEETTSCSCEEEECSCC--SCEEEEEEETTEEEEEET-TTTEEEEEETTTCCSCEEEECC
T ss_pred EEcCCCCceEEEecCCC--CCceEEEEeCCEEEEEec-CCCeEEEEECCCCCceEEEeCC
Confidence 99986432221111111 112234567788888864 6789999999899876666544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.9 Score=43.74 Aligned_cols=149 Identities=12% Similarity=-0.038 Sum_probs=77.7
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+.||+....+.|+.+|.++|++.-.... .....+.++ .++.||++..... .....++.++.
T Consensus 153 g~Lyv~D~~~~I~~id~~~g~v~~~~~~------~~~P~giavd~dG~lyVad~~~~------------~~~~gv~~~~~ 214 (433)
T 4hw6_A 153 DDLYWVGQRDAFRHVDFVNQYVDIKTTN------IGQCADVNFTLNGDMVVVDDQSS------------DTNTGIYLFTR 214 (433)
T ss_dssp CEEEEECBTSCEEEEETTTTEEEEECCC------CSCEEEEEECTTCCEEEEECCSC------------TTSEEEEEECG
T ss_pred CEEEEEeCCCCEEEEECCCCEEEEeecC------CCCccEEEECCCCCEEEEcCCCC------------cccceEEEEEC
Confidence 5677776557899999988876543321 112223333 2334888743210 01123555665
Q ss_pred CCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEe-cCCc-eecceEE--eCCEEEEEe
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYD-TGAT-IYGGASV--SNGCIYMGN 358 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~-~~~~-~~~~p~~--~~g~lyv~~ 358 (382)
..+.. +...... .....-+.++ ++.+|++.. ..++|+.+|+++|++..++. .+.. .....++ .+++||++.
T Consensus 215 ~~~~~-~~~~~~~-~~~P~giavd~~~G~lyv~d~-~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad 291 (433)
T 4hw6_A 215 ASGFT-ERLSLCN-ARGAKTCAVHPQNGKIYYTRY-HHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY 291 (433)
T ss_dssp GGTTC-CEEEEEE-CSSBCCCEECTTTCCEEECBT-TCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred CCCee-ccccccc-cCCCCEEEEeCCCCeEEEEEC-CCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence 43322 1111110 0011123343 678998874 56899999999998844442 2221 1112333 234699998
Q ss_pred CceeEeecCCccCCCCC
Q 040693 359 GYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 359 ~~g~~~~~~~~~~~~g~ 375 (382)
.....+..+.++..+++
T Consensus 292 ~~~~~I~~~~~d~~~~~ 308 (433)
T 4hw6_A 292 NGKHCIYRVDYNRETGK 308 (433)
T ss_dssp TTTTEEEEEEBCTTTCC
T ss_pred CCCCEEEEEeCCCCCcc
Confidence 76555545555554553
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=93.80 E-value=6.8 Score=40.10 Aligned_cols=145 Identities=12% Similarity=0.061 Sum_probs=70.1
Q ss_pred CcEEEEEeCCCCCee-eeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 214 SGFAWALDRDSGSLI-WSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 214 ~g~l~ald~~tG~~~-W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
...++.+|.++|+.. |..-.... .. .......+++.+|+..... .....|+.+|+.+++..|+
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~~--~~-~~~~~~~dg~~l~~~s~~~-------------~~~~~l~~~d~~~~~~~~~ 356 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPDL--KA-QWDFVDGVGDQLWFVSGDG-------------APLKKIVRVDLSGSTPRFD 356 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECSS--SS-CEEEEEEETTEEEEEECTT-------------CTTCEEEEEECSSSSCEEE
T ss_pred cceEEEEECCCCCCcccEEecCCC--Cc-eEEEEeccCCEEEEEECCC-------------CCCCEEEEEeCCCCccccE
Confidence 348999999887322 32211110 01 1111113777777764321 2246799999988633455
Q ss_pred ecCCCCCCCCcceEEeCCEEEEeeecCCC--cEEEEeCCCCcEeEEEecCC-ceecceEE--eCCEEEEE-eCceeEeec
Q 040693 293 TADPSNGTAPGPVTVANGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGA-TIYGGASV--SNGCIYMG-NGYKVTVGF 366 (382)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~-~~~~~p~~--~~g~lyv~-~~~g~~~~~ 366 (382)
.-.+........+...++.+++... .++ +|+.+|.+ |+.+.+...+. +....+.. .+..|++. ++...-..+
T Consensus 357 ~l~~~~~~~l~~~~~~~~~lv~~~~-~dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i 434 (741)
T 1yr2_A 357 TVVPESKDNLESVGIAGNRLFASYI-HDAKSQVLAFDLD-GKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATV 434 (741)
T ss_dssp EEECCCSSEEEEEEEEBTEEEEEEE-ETTEEEEEEEETT-SCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEE
T ss_pred EEecCCCCeEEEEEEECCEEEEEEE-ECCEEEEEEEeCC-CCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEE
Confidence 4333321111122333554444432 243 58888874 66665555432 22222222 23445554 333233445
Q ss_pred CCccCCCCCe
Q 040693 367 GNKNFTSGTS 376 (382)
Q Consensus 367 ~~~~~~~g~~ 376 (382)
|..|..+|+.
T Consensus 435 ~~~d~~tg~~ 444 (741)
T 1yr2_A 435 LALDPATAKT 444 (741)
T ss_dssp EEEETTTTEE
T ss_pred EEEECCCCcE
Confidence 6666666653
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=93.69 E-value=2.2 Score=38.48 Aligned_cols=22 Identities=9% Similarity=0.164 Sum_probs=18.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGS 226 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~ 226 (382)
+..|+.++.|+.+..+|..+|+
T Consensus 71 ~~~l~s~s~D~~v~iWd~~~~~ 92 (316)
T 3bg1_A 71 GNILASCSYDRKVIIWREENGT 92 (316)
T ss_dssp SSCEEEEETTSCEEEECCSSSC
T ss_pred CCEEEEEECCCEEEEEECCCCc
Confidence 3578888899999999999875
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=93.66 E-value=4.6 Score=37.69 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=66.8
Q ss_pred EEEEEccCcEEEEEeC-------CCCCeeeeeccCCCCCCCCcccceeee--CCeEEEEecCccccccccCCCCCCCCCc
Q 040693 207 IVVAVQKSGFAWALDR-------DSGSLIWSMEAGPGGLGGGAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAG 277 (382)
Q Consensus 207 ~v~~~~~~g~l~ald~-------~tG~~~W~~~~~~~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g 277 (382)
.+++..++|.+.-++. .++++..++..+. ..-+.++| .+.||++.. ..
T Consensus 145 yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs------q~EgcvvDd~~g~Lyv~eE-----------------d~ 201 (355)
T 3amr_A 145 YAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNS------QTEGMAADDEYGRLYIAEE-----------------DE 201 (355)
T ss_dssp EEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSS------CEEEEEEETTTTEEEEEET-----------------TT
T ss_pred EEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCC------CcceEEEcCCCCeEEEecc-----------------cc
Confidence 5777777776655433 2346667777643 12233333 589999843 34
Q ss_pred eEEEEECC-----CCcEEeeecCCCC--CCCCcceEEeC---CEEEEeeecCCCcEEEEeCC-CCcEeEEEecCC
Q 040693 278 GWVAMDAS-----NGNVLWSTADPSN--GTAPGPVTVAN---GVLFGGSTYRQGPIYAMDVK-TGKILWSYDTGA 341 (382)
Q Consensus 278 ~v~a~d~~-----tG~~~W~~~~~~~--~~~~~~~~~~~---~~v~~~~~~~~g~l~~ld~~-tG~ilw~~~~~~ 341 (382)
.|+.||+. +++++.......- ....-.+.... +++++++. .+..+.++|.+ +.+.+-++.++.
T Consensus 202 GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQ-G~~s~~Vydr~~~~~~vg~f~Ig~ 275 (355)
T 3amr_A 202 AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQ-GNSSYAIYDRQGKNKYVADFRITD 275 (355)
T ss_dssp EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEG-GGTEEEEEESSTTCCEEEEEEECC
T ss_pred eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcC-CCCEEEEEECCCCCcEEEEEEecC
Confidence 59999955 4677766653321 11122222122 47888774 45689999997 788898887553
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=93.42 E-value=3.1 Score=38.84 Aligned_cols=27 Identities=15% Similarity=-0.028 Sum_probs=15.1
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeee
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSM 231 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~ 231 (382)
+..|+.+..++.+..+|..+++..-.+
T Consensus 267 g~~l~s~s~d~~i~vwd~~~~~~~~~l 293 (393)
T 4gq1_A 267 GSGILAMCKSGAWLRWNLFANNDYNEI 293 (393)
T ss_dssp TCEEEEECTTSEEEEEEC---------
T ss_pred CCEEEEEeCCCCEEEEECccCCCCceE
Confidence 457888888999999998887655433
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.17 E-value=1.4 Score=42.20 Aligned_cols=149 Identities=9% Similarity=0.014 Sum_probs=77.1
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
++.||+....+.|+.+|.+++++.-.... .......++ +++.||++..... .....++.+
T Consensus 149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~------~~~P~~ia~d~~G~~lyvad~~~~------------~~~~~v~~~ 210 (430)
T 3tc9_A 149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSG------LSKVRTICWTHEADSMIITNDQNN------------NDRPNNYIL 210 (430)
T ss_dssp EEEEEEEEBTEEEEEEETTTTEEEEEECC------CSCEEEEEECTTSSEEEEEECCSC------------TTSEEEEEE
T ss_pred CCeEEEEeCCCcEEEEECCCCEEEEEecC------CCCcceEEEeCCCCEEEEEeCCCC------------cccceEEEE
Confidence 45677776558899999987765433221 112233333 4566888743211 111245666
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc-eecceEEe-CC-EEEEE
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT-IYGGASVS-NG-CIYMG 357 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~-~~~~p~~~-~g-~lyv~ 357 (382)
+.. |+......+.. ......+.++ ++.+|++.. ..++|+.+|+++++..-....+.. .-...++. ++ +||++
T Consensus 211 ~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~-~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~ 287 (430)
T 3tc9_A 211 TRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSW-NAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIV 287 (430)
T ss_dssp EGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEET-TTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEE
T ss_pred eCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEEC-CCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEE
Confidence 653 43221111111 0011223343 578888874 578999999987765322333321 12233442 34 49999
Q ss_pred eCceeEeecCCccCCCC
Q 040693 358 NGYKVTVGFGNKNFTSG 374 (382)
Q Consensus 358 ~~~g~~~~~~~~~~~~g 374 (382)
......+..+..+..++
T Consensus 288 d~~~~~I~~~~~d~~~~ 304 (430)
T 3tc9_A 288 VVNQHYILRSDYDWKTK 304 (430)
T ss_dssp ETTTTEEEEEEEETTTT
T ss_pred ECCCCEEEEEeCCcccc
Confidence 87655554555554333
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.95 Score=41.65 Aligned_cols=69 Identities=12% Similarity=0.158 Sum_probs=44.9
Q ss_pred EEe-CCEEEEeeecC----CCcEEEEeCCCCcEeEEEecCCc------eecceEEe--CCEEEEEeC---ceeEeecCCc
Q 040693 306 TVA-NGVLFGGSTYR----QGPIYAMDVKTGKILWSYDTGAT------IYGGASVS--NGCIYMGNG---YKVTVGFGNK 369 (382)
Q Consensus 306 ~~~-~~~v~~~~~~~----~g~l~~ld~~tG~ilw~~~~~~~------~~~~p~~~--~g~lyv~~~---~g~~~~~~~~ 369 (382)
.++ ++++|+...+. ..+|+.+|+++|+++-++..+.. .....++. ++.+|++.. ... .++.+
T Consensus 73 ~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~--~i~v~ 150 (343)
T 2qe8_A 73 KSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA--ALIRV 150 (343)
T ss_dssp EECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC--EEEEE
T ss_pred EEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC--eEEEE
Confidence 444 47899887411 36899999999998877776421 22445565 579999976 322 24455
Q ss_pred cCCCCCe
Q 040693 370 NFTSGTS 376 (382)
Q Consensus 370 ~~~~g~~ 376 (382)
+..+|+.
T Consensus 151 d~~~g~~ 157 (343)
T 2qe8_A 151 DLQTGLA 157 (343)
T ss_dssp ETTTCCE
T ss_pred ECCCCCE
Confidence 6666664
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.56 E-value=11 Score=38.87 Aligned_cols=92 Identities=11% Similarity=0.021 Sum_probs=46.5
Q ss_pred CceEEEEECCCCcEEe--eecCCCCCCCCcceEEe---CCEEEEeeec---CCCcEEEEeCCCCcEeEEE---ecCCc-e
Q 040693 276 AGGWVAMDASNGNVLW--STADPSNGTAPGPVTVA---NGVLFGGSTY---RQGPIYAMDVKTGKILWSY---DTGAT-I 343 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W--~~~~~~~~~~~~~~~~~---~~~v~~~~~~---~~g~l~~ld~~tG~ilw~~---~~~~~-~ 343 (382)
...|+.+|+.+++..+ +.-.+.. .......+ ++.+|+.+.. ....|+.+|.++++ .|+. ..... .
T Consensus 294 ~~~l~~~d~~~~~~~~~~~~l~~~~--~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~-~~~~~li~~~~~~~ 370 (751)
T 2xe4_A 294 TAEVHLLDLRKGNAHNTLEIVRPRE--KGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPS-DWSHVLVDHSEDVF 370 (751)
T ss_dssp CEEEEEEESSSCTTCCCEEESSCCC--TTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTT-CCCCEEECCCSSEE
T ss_pred CceEEEEECCCCCCCceeEEeecCC--CCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcc-cceeeEECCCCCcE
Confidence 4679999999874334 3222221 11112233 6777776641 12479999987641 2321 11111 2
Q ss_pred ecceEEeCCEEEEEeCceeEeecCCcc
Q 040693 344 YGGASVSNGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 344 ~~~p~~~~g~lyv~~~~g~~~~~~~~~ 370 (382)
.......++.|++....+....++.++
T Consensus 371 l~~~~~~~~~lv~~~~~~g~~~l~~~d 397 (751)
T 2xe4_A 371 MESIAVRSNYLVVAGRRAGLTRIWTMM 397 (751)
T ss_dssp EEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred EEEEEEECCEEEEEEEeCCEEEEEEEe
Confidence 234445567777765543333344333
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.17 E-value=6.3 Score=35.39 Aligned_cols=86 Identities=13% Similarity=0.036 Sum_probs=39.6
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCC--cEEEEeCCCCcEeEEEecCCceecceEEeCCE
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGATIYGGASVSNGC 353 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~ 353 (382)
...|+.+| +|+..-....... .....+...+++++.++. ++ .|+ ++ +|++.-.... ......+.+....
T Consensus 243 ~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~sdg~~~~~~~--~~~~~l~-~~--~g~~~~~~~~-~~~v~~~~~s~~~ 313 (347)
T 2gop_A 243 HNKLYIYD--GKEVMGILDEVDR-GVGQAKIKDGKVYFTLFE--EGSVNLY-IW--DGEIKPIAKG-RHWIMGFDVDEIV 313 (347)
T ss_dssp SCEEEEEC--SSCEEESSTTCCS-EEEEEEEETTEEEEEEEE--TTEEEEE-EE--SSSEEEEECS-SSEEEEEEESSSE
T ss_pred cceEEEEC--CCceEeccccCCc-ccCCccEEcCcEEEEEec--CCcEEEE-Ec--CCceEEEecC-CCeEEeeeeeCcE
Confidence 35788898 6765432222111 111112233455555453 44 577 77 5776433322 2233334443434
Q ss_pred EEEEeCceeEeecCCcc
Q 040693 354 IYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 354 lyv~~~~g~~~~~~~~~ 370 (382)
+|+.++.+....+|.++
T Consensus 314 ~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 314 VYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEEECSSSCCEEEEES
T ss_pred EEEEcCCCChHHheEeC
Confidence 44455554433556555
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.19 E-value=3.5 Score=40.63 Aligned_cols=100 Identities=10% Similarity=0.102 Sum_probs=53.7
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMD 283 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d 283 (382)
.++..++.|+.+..+|..+++..-.+.... .+......+. ++..+..+ ..++.|..+|
T Consensus 324 ~~laS~S~D~tvklWD~~~~~~~~~~~~~~---~~~~v~~v~fsp~~~~l~s~-----------------~~d~tv~lwd 383 (524)
T 2j04_B 324 TVVSTVAVDGYFYIFNPKDIATTKTTVSRF---RGSNLVPVVYCPQIYSYIYS-----------------DGASSLRAVP 383 (524)
T ss_dssp CEEEEEETTSEEEEECGGGHHHHCEEEEEC---SCCSCCCEEEETTTTEEEEE-----------------CSSSEEEEEE
T ss_pred eEEEEeccCCeEEEEECCCCCccccccccc---ccCcccceEeCCCcCeEEEe-----------------CCCCcEEEEE
Confidence 577888899999999998877544332110 0001111222 33343333 2346789999
Q ss_pred CCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCC
Q 040693 284 ASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVK 329 (382)
Q Consensus 284 ~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~ 329 (382)
+++++.+.+....... ...+.+ ++..++.++ .++.|...|+.
T Consensus 384 ~~~~~~~~~l~gH~~~--V~sva~Sp~g~~l~Sgs--~Dgtv~lwd~~ 427 (524)
T 2j04_B 384 SRAAFAVHPLVSRETT--ITAIGVSRLHPMVLAGS--ADGSLIITNAA 427 (524)
T ss_dssp TTCTTCCEEEEECSSC--EEEEECCSSCCBCEEEE--TTTEEECCBSC
T ss_pred CcccccceeeecCCCc--eEEEEeCCCCCeEEEEE--CCCEEEEEech
Confidence 9998876554432211 111111 234455544 37777776654
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=91.16 E-value=14 Score=37.40 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=73.7
Q ss_pred cEEEEEeCCCCCeeeee-ccCCCCCCCCcccc-eeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE-Ee
Q 040693 215 GFAWALDRDSGSLIWSM-EAGPGGLGGGAMWG-AATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV-LW 291 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~-~~~~~~~~g~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~-~W 291 (382)
..++.+|.++++..+.. .... . .... ...+++.+|+.+... .....|+.+|+.+++. .|
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~~----~-~~~~~~~~~g~~l~~~t~~~-------------~~~~~l~~~d~~~~~~~~~ 320 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGDL----D-ADVSLVDNKGSTLYLLTNRD-------------APNRRLVTVDAANPGPAHW 320 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECSS----S-SCEEEEEEETTEEEEEECTT-------------CTTCEEEEEETTSCCGGGC
T ss_pred cEEEEEECCCCCCceEEEeCCC----C-ceEEEEeccCCEEEEEECCC-------------CCCCEEEEEeCCCCCcccc
Confidence 48999999887533332 2211 1 1112 223677777764431 1247899999998864 56
Q ss_pred eecCCCCCCCCcceEEeCCEEEEeeecCCC--cEEEEeCCCCcEeEEEecCCc-eecceEE--eCCEEEEEeCc-eeEee
Q 040693 292 STADPSNGTAPGPVTVANGVLFGGSTYRQG--PIYAMDVKTGKILWSYDTGAT-IYGGASV--SNGCIYMGNGY-KVTVG 365 (382)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g--~l~~ld~~tG~ilw~~~~~~~-~~~~p~~--~~g~lyv~~~~-g~~~~ 365 (382)
+.-.+...... .+...++.+++... .++ .|+.+|.+ |+..-+...+.. ....+.. .++.|++..+. -.-..
T Consensus 321 ~~l~~~~~~~~-~~s~~g~~lv~~~~-~~g~~~l~~~d~~-g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~ 397 (693)
T 3iuj_A 321 RDLIPERQQVL-TVHSGSGYLFAEYM-VDATARVEQFDYE-GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPT 397 (693)
T ss_dssp EEEECCCSSCE-EEEEETTEEEEEEE-ETTEEEEEEECTT-SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCE
T ss_pred EEEecCCCCEE-EEEEECCEEEEEEE-ECCeeEEEEEECC-CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCE
Confidence 64333322122 44445665555443 243 68999987 544555555432 2222222 34566665332 11133
Q ss_pred cCCccCCCCCe
Q 040693 366 FGNKNFTSGTS 376 (382)
Q Consensus 366 ~~~~~~~~g~~ 376 (382)
+|.+|..+|+.
T Consensus 398 l~~~d~~~g~~ 408 (693)
T 3iuj_A 398 LYRFEPKSGAI 408 (693)
T ss_dssp EEEECTTTCCE
T ss_pred EEEEECCCCeE
Confidence 56666666654
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.98 E-value=1.4 Score=43.21 Aligned_cols=154 Identities=11% Similarity=0.042 Sum_probs=76.8
Q ss_pred ecEEEEEcc-CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee---------eCCeEEEEecCccccccccCCCCCCC
Q 040693 205 HDIVVAVQK-SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT---------DERRIYTNIANSQHKNFNLKPSKNST 274 (382)
Q Consensus 205 ~~~v~~~~~-~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~---------~~~~v~~~~~~~~~~~~~~~~~~~~~ 274 (382)
++.||+... .+.+..+|.+++++.--...+.... ......++ +++.+|++....... .
T Consensus 151 ~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~--~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~----------~ 218 (496)
T 3kya_A 151 KDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPT--NRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG----------D 218 (496)
T ss_dssp EEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSC--SBEEEEEECCCBTTTBCTTCEEEEEECCCTTG----------G
T ss_pred CCEEEEEECCCCeEEEEECCCCEEEEEEccCcccc--CCCcEEEEeecccccCCCCCEEEEEeCCCCCc----------c
Confidence 344555543 4679999999877664444322111 11222323 455688874431100 0
Q ss_pred CCceEEEEECCC-CcEEe-----eecCCCCCCCCcceEEe--CCEEEEeeecCCCcEEEEeCC-------CCcE------
Q 040693 275 IAGGWVAMDASN-GNVLW-----STADPSNGTAPGPVTVA--NGVLFGGSTYRQGPIYAMDVK-------TGKI------ 333 (382)
Q Consensus 275 ~~g~v~a~d~~t-G~~~W-----~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~g~l~~ld~~-------tG~i------ 333 (382)
....++.++... |+..+ .... .. ...-+.++ ++.||++.. ..+.|+.+|++ +|+.
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~--~p~giavdp~~g~LYvtd~-~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YK--QCNGATIHPINGELYFNSY-EKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ES--CCCCEEECTTTCCEEEEET-TTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cCceEEEEecCCCCceeecccceeecc-CC--CceEEEEcCCCCeEEEEEC-CCCEEEEEecccccccccCceeeccccc
Confidence 112377777554 44331 1111 11 11222343 578888875 57889999998 6664
Q ss_pred -----eEE-EecCCce-ecceEE--eCCEEEEEeCceeEeecCCccCCCC
Q 040693 334 -----LWS-YDTGATI-YGGASV--SNGCIYMGNGYKVTVGFGNKNFTSG 374 (382)
Q Consensus 334 -----lw~-~~~~~~~-~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g 374 (382)
+-+ +.++... -...++ .++.||++....+.+..+.+|..++
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~ 344 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK 344 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc
Confidence 112 2232211 123344 2345899987555444444555444
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=18 Score=36.43 Aligned_cols=69 Identities=14% Similarity=-0.010 Sum_probs=44.1
Q ss_pred eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeC
Q 040693 249 DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDV 328 (382)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~ 328 (382)
+++.||+... ..+.|..+|...+...- ..... ...-.+.+.++.+|++.. ..+.|+.+|.
T Consensus 176 ~~~~LY~aD~----------------~~~~I~~~d~dG~~~~v-~~~~l--~~P~glav~~~~ly~tD~-~~~~I~~~dk 235 (628)
T 4a0p_A 176 AKRRLYWTDL----------------DTNLIESSNMLGLNREV-IADDL--PHPFGLTQYQDYIYWTDW-SRRSIERANK 235 (628)
T ss_dssp TTTEEEEEET----------------TTTEEEEEETTSCSCEE-EEECC--SCEEEEEEETTEEEEEET-TTTEEEEEET
T ss_pred ccCEEEEEEC----------------CCCEEEEEcCCCCceEE-eeccC--CCceEEEEECCEEEEecC-CCCEEEEEEC
Confidence 3688998743 34679999986544321 11111 112245567789999874 5789999999
Q ss_pred CCCcEeEEE
Q 040693 329 KTGKILWSY 337 (382)
Q Consensus 329 ~tG~ilw~~ 337 (382)
.+|+..-.+
T Consensus 236 ~tg~~~~~l 244 (628)
T 4a0p_A 236 TSGQNRTII 244 (628)
T ss_dssp TTCCSCEEE
T ss_pred CCCCceEEE
Confidence 888754443
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=89.81 E-value=16 Score=35.75 Aligned_cols=26 Identities=4% Similarity=-0.205 Sum_probs=19.1
Q ss_pred CCEEEEeeecCCCcEEEEeCCCCcEeEE
Q 040693 309 NGVLFGGSTYRQGPIYAMDVKTGKILWS 336 (382)
Q Consensus 309 ~~~v~~~~~~~~g~l~~ld~~tG~ilw~ 336 (382)
++.+|++.. .+++|..|++ +|.+..-
T Consensus 390 ~g~lyVaD~-~N~rIr~i~~-~G~v~Ti 415 (496)
T 3kya_A 390 EYDFYFVDR-LNFCVRKVTP-EGIVSTY 415 (496)
T ss_dssp CEEEEEEEG-GGTEEEEECT-TCBEEEE
T ss_pred CCeEEEEEC-CCCEEEEEeC-CCCEEEE
Confidence 468888875 5789999995 6866543
|
| >3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0 | Back alignment and structure |
|---|
Probab=89.56 E-value=5 Score=30.58 Aligned_cols=20 Identities=15% Similarity=0.307 Sum_probs=16.5
Q ss_pred cceEEEEeCccCceeeeeec
Q 040693 54 QGSLAKLDAKTGRILWQTFM 73 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~ 73 (382)
+|.|+.++...++++|....
T Consensus 33 dGNLvL~~~~~~~~vWssnt 52 (113)
T 3mez_B 33 DCNLVLTKGSKTNIVWESGT 52 (113)
T ss_dssp TSCEEEEETTTTEEEEECCC
T ss_pred CCEEEEEECCCCEEEEECCc
Confidence 88898888756899999765
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=20 Score=35.97 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=41.7
Q ss_pred ceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEE-ecCCceecceEEeCCEEEEEeCceeEeecCCccCCCCC
Q 040693 304 PVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSY-DTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 304 ~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~-~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~ 375 (382)
-++++ ++++|++.. ..++|..+|++ |...-.+ ...-..-.+.++.+++||++..... .++.++..+|+
T Consensus 483 GlalD~~~~~LY~aD~-~~~~I~~~~~d-G~~~~~~~~~~l~~P~glav~~~~ly~tD~~~~--~I~~~~k~~g~ 553 (619)
T 3s94_A 483 GLALDYDEGKIYWGDA-KTDKIEVMNTD-GTGRRVLVEDKIPHIFGFTLLGDYVYWTDWQRR--SIERVHKRSAE 553 (619)
T ss_dssp EEEEETTTTEEEEEET-TTTEEEEEESS-SCCCEEEEECCCCSSCCEEEETTEEEEECTTSS--CEEEEESSSCC
T ss_pred eeEEcccCCEEEEEEC-CCCEEEEEecC-CCceEEEeccCCCCcEEEEEECCEEEEeecCCC--eEEEEEcCCCc
Confidence 34555 679999875 56789999986 3322222 1111122456778999999986544 34556666664
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=89.06 E-value=7.6 Score=39.66 Aligned_cols=130 Identities=8% Similarity=-0.084 Sum_probs=70.9
Q ss_pred cEEEEEeCCCCCeeeeecc-CC---CCCCCCcccceeee--CCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCc
Q 040693 215 GFAWALDRDSGSLIWSMEA-GP---GGLGGGAMWGAATD--ERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGN 288 (382)
Q Consensus 215 g~l~ald~~tG~~~W~~~~-~~---~~~~g~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~ 288 (382)
..++++|..+++ |+.-. +. ...........++. ++.||+..+..... ...+.++.+|+.+.
T Consensus 412 ~~v~~yd~~~~~--W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~----------~~~~dv~~yd~~t~- 478 (695)
T 2zwa_A 412 NEILQLSIHYDK--IDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPH----------QGLSDNWIFDMKTR- 478 (695)
T ss_dssp CCEEEEEECSSC--EEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTT----------CBCCCCEEEETTTT-
T ss_pred CcEEEEECCCCe--EEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCC----------CccccEEEEeCCCC-
Confidence 458999998764 77644 20 01112223333444 88888874432100 12356899999886
Q ss_pred EEeeec--CCCCCCCCcceEEeCCEEEEeee-cCCCcEEEEeCCCCcEeEEEecC-----Ccee-cceEEeC---CEEEE
Q 040693 289 VLWSTA--DPSNGTAPGPVTVANGVLFGGST-YRQGPIYAMDVKTGKILWSYDTG-----ATIY-GGASVSN---GCIYM 356 (382)
Q Consensus 289 ~~W~~~--~~~~~~~~~~~~~~~~~v~~~~~-~~~g~l~~ld~~tG~ilw~~~~~-----~~~~-~~p~~~~---g~lyv 356 (382)
.|+.- .+.+....+...+.++.+|+... ...+.++++|+.+.+ |+.-.. ..-. .+.++.+ ++||+
T Consensus 479 -~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~--W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 479 -EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI--FKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp -EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE--EEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred -cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc--eEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence 57764 33322222333323666666532 112279999998764 876432 1222 2324445 88999
Q ss_pred EeCc
Q 040693 357 GNGY 360 (382)
Q Consensus 357 ~~~~ 360 (382)
..+.
T Consensus 556 ~GG~ 559 (695)
T 2zwa_A 556 LGGG 559 (695)
T ss_dssp ECCB
T ss_pred ECCc
Confidence 8764
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=87.83 E-value=15 Score=33.12 Aligned_cols=130 Identities=9% Similarity=0.053 Sum_probs=70.8
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
...|+.++.+.++ ........ ......+++.||...... .....|+.+++...+ +-+.
T Consensus 87 ~~~Iy~i~~dg~~-~~~l~~~~-------~~~~s~~g~~Iy~~~~~~-------------~~~~~Iy~~~~dGs~-~~~l 144 (302)
T 3s25_A 87 RNSLCRIKRNGHG-STVLDPDP-------CIYASLIGNYIYYLHYDT-------------QTATSLYRIRIDGEE-KKKI 144 (302)
T ss_dssp SEEEEEEETTSCC-CEEEECSC-------EEEEEEETTEEEEEEESS-------------SSCEEEEEEETTSCC-CEEE
T ss_pred CCeEEEEeCCCCc-ceEeecCC-------ccEEEEeCCEEEEEeecC-------------CCCceEEEEECCCCC-eEEE
Confidence 3578999988554 44433211 112334788888864100 224668888886433 3333
Q ss_pred cCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCC
Q 040693 294 ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFT 372 (382)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~ 372 (382)
.... ..++..+++.+|..+. ....|+.++++.+. ..++- .+.. ..|+. .++.||.+...+. .+++..+..
T Consensus 145 t~~~----~~~~~~~g~~iy~t~~-g~~~Iy~~~l~g~~-~~~l~-~~~~-~~~~~P~g~~iy~t~~~~~-~~I~~~~ld 215 (302)
T 3s25_A 145 KNHY----LFTCNTSDRYFYYNNP-KNGQLYRYDTASQS-EALFY-DCNC-YKPVVLDDTNVYYMDVNRD-NAIVHVNIN 215 (302)
T ss_dssp ESSC----CCCSEEETTEEEEECT-TTCCEEEEETTTTE-EEEEE-CSCE-EEEEEEETTEEEEEEGGGT-TEEEEECSS
T ss_pred eCCC----ceEeeEECCEEEEEeC-CCceEEEEECCCCC-EEEEe-CCCc-cceeeecCCEEEEEEcCCC-cEEEEEECC
Confidence 2221 1344567788887763 46789999987554 23332 2222 23444 7888888765432 334444444
Q ss_pred CC
Q 040693 373 SG 374 (382)
Q Consensus 373 ~g 374 (382)
.+
T Consensus 216 G~ 217 (302)
T 3s25_A 216 NP 217 (302)
T ss_dssp SC
T ss_pred CC
Confidence 33
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=87.14 E-value=17 Score=32.85 Aligned_cols=122 Identities=12% Similarity=0.094 Sum_probs=61.8
Q ss_pred ecEEEEEc----cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 205 HDIVVAVQ----KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 205 ~~~v~~~~----~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
++.|+... .+..|+.++.+ |+...+..... .. ....+++.||.... ....|+
T Consensus 115 g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~~~-----~~--~~~~~g~~iy~t~~----------------g~~~Iy 170 (302)
T 3s25_A 115 GNYIYYLHYDTQTATSLYRIRID-GEEKKKIKNHY-----LF--TCNTSDRYFYYNNP----------------KNGQLY 170 (302)
T ss_dssp TTEEEEEEESSSSCEEEEEEETT-SCCCEEEESSC-----CC--CSEEETTEEEEECT----------------TTCCEE
T ss_pred CCEEEEEeecCCCCceEEEEECC-CCCeEEEeCCC-----ce--EeeEECCEEEEEeC----------------CCceEE
Confidence 45565543 46689999987 55444443221 01 12237788887632 235688
Q ss_pred EEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEE
Q 040693 281 AMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMG 357 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~ 357 (382)
.+++.+++.. +.. ... ...++.-.++.+|.........|+.++++.+. ...+. ........+.+++||.+
T Consensus 171 ~~~l~g~~~~-~l~-~~~--~~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt--~~~~~~~~~~g~~Iy~~ 240 (302)
T 3s25_A 171 RYDTASQSEA-LFY-DCN--CYKPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT--EANIEHYNVYGSLIFYQ 240 (302)
T ss_dssp EEETTTTEEE-EEE-CSC--EEEEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS--CSCEEEEEEETTEEEEE
T ss_pred EEECCCCCEE-EEe-CCC--ccceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe--CCCcceEEECCCEEEEE
Confidence 8887666433 221 111 12233225677777653223467788776433 22221 11112244456666665
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=83.76 E-value=30 Score=32.71 Aligned_cols=27 Identities=4% Similarity=-0.182 Sum_probs=20.7
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeec
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSME 232 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~ 232 (382)
+..|+++..|+.+..+|.. ++..-.+.
T Consensus 204 g~~lasgs~dg~v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 204 GKQLAVGKQNGTVVQYLPT-LQEKKVIP 230 (434)
T ss_dssp SSCEEEEETTSCEEEECTT-CCEEEEEC
T ss_pred CCEEEEEcCCCcEEEEccC-Cccccccc
Confidence 4677888899999999998 76654444
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=83.32 E-value=8.2 Score=36.72 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=37.9
Q ss_pred CCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 275 IAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
.++.|..+|+++++........... ...+.. ++.+++.++ .++.|..+|.+ ++..-....
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~--v~~v~wspdg~~lasgs--~dg~v~iwd~~-~~~~~~~~~ 231 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVA--VTSVCWSPKGKQLAVGK--QNGTVVQYLPT-LQEKKVIPC 231 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGC--EEEEEECTTSSCEEEEE--TTSCEEEECTT-CCEEEEECC
T ss_pred CCCeEEEEEcCCCcceeeccCCCCc--eeEEEEcCCCCEEEEEc--CCCcEEEEccC-CcccccccC
Confidence 4588999999999766544322111 112222 345677776 48999999998 766555543
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=24 Score=32.53 Aligned_cols=138 Identities=16% Similarity=0.271 Sum_probs=69.2
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeee-eeccCCCCCCCCcccceeee-----CCeEEEEecC-ccccccccCCCCCCCCCc
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIW-SMEAGPGGLGGGAMWGAATD-----ERRIYTNIAN-SQHKNFNLKPSKNSTIAG 277 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W-~~~~~~~~~~g~~~~~~~~~-----~~~v~~~~~~-~~~~~~~~~~~~~~~~~g 277 (382)
++.|++....|.|+.+| .+|+... ..+... .......+.+++ ++.||+.... ... .....
T Consensus 39 dG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~--~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~----------~~~~~ 105 (354)
T 3a9g_A 39 GGRYLVTERPGRLVLIS-PSGKKLVASFDVAN--VGEAGLLGLALHPEFPKKSWVYLYASYFAEG----------GHIRN 105 (354)
T ss_dssp TTEEEEEETTTEEEEEC-SSCEEEEEECCCCC--STTCSEEEEEECTTTTTSCEEEEEEEEECGG----------GCEEE
T ss_pred CCeEEEEeCCCEEEEEe-CCCceEeeccceee--cCCCceeeEEeCCCCCcCCEEEEEEeccCCC----------CCcce
Confidence 34577887789999998 4575111 111100 001122333443 5789987431 000 00125
Q ss_pred eEEEEECCCC-------cEEee-ecCCCCCCCCcceEEe-CCEEEEeeec------------CCCcEEEEeCCCCc----
Q 040693 278 GWVAMDASNG-------NVLWS-TADPSNGTAPGPVTVA-NGVLFGGSTY------------RQGPIYAMDVKTGK---- 332 (382)
Q Consensus 278 ~v~a~d~~tG-------~~~W~-~~~~~~~~~~~~~~~~-~~~v~~~~~~------------~~g~l~~ld~~tG~---- 332 (382)
.|..++...+ ++++. .+. ........+.+. ++.+|++... ..|+|+.||++ |+
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~-~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~ 183 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPG-AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPAD 183 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEEC-CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTT
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCC-CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCC
Confidence 6888887655 22332 221 111223445564 5788887531 13679999876 54
Q ss_pred ------EeEEEecCCceecceEEe--CCEEEEEeC
Q 040693 333 ------ILWSYDTGATIYGGASVS--NGCIYMGNG 359 (382)
Q Consensus 333 ------ilw~~~~~~~~~~~p~~~--~g~lyv~~~ 359 (382)
.+|..-+..+ ...++. +++||++..
T Consensus 184 npf~~~~i~a~G~rnp--~Gla~d~~~g~l~v~d~ 216 (354)
T 3a9g_A 184 NPFPNSPIWSYGHRNP--QGIDWHRASGVMVATEH 216 (354)
T ss_dssp SSSTTCCEEEECCSCC--CEEEECTTTCCEEEEEC
T ss_pred CCCCCCcEEEEccCCc--ceEEEeCCCCCEEEEec
Confidence 4554432211 123333 578888764
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.46 E-value=25 Score=30.92 Aligned_cols=30 Identities=3% Similarity=0.212 Sum_probs=24.1
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeecc
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFML 74 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~ 74 (382)
++++|+.... ++.|+.||+. |+++.+..+.
T Consensus 38 ~~~L~aV~d~-------------~~~I~~ld~~-g~v~~~i~l~ 67 (255)
T 3qqz_A 38 SNTLFSTINK-------------PAAIVEMTTN-GDLIRTIPLD 67 (255)
T ss_dssp TTEEEEEEET-------------TEEEEEEETT-CCEEEEEECS
T ss_pred CCEEEEEECC-------------CCeEEEEeCC-CCEEEEEecC
Confidence 4789986653 7899999996 9998888763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 382 | ||||
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 7e-18 | |
| d1flga_ | 582 | b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas a | 3e-05 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 2e-17 | |
| d1kv9a2 | 560 | b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogen | 2e-05 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 2e-16 | |
| d1kb0a2 | 573 | b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogen | 2e-05 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 5e-16 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 8e-12 | |
| d2ad6a1 | 571 | b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy c | 5e-04 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 2e-15 | |
| d1w6sa_ | 596 | b.70.1.1 (A:) Methanol dehydrogenase, heavy chain | 0.003 |
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 83.1 bits (204), Expect = 7e-18
Identities = 81/462 (17%), Positives = 136/462 (29%), Gaps = 97/462 (20%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKL 60
A+ ++ GK+VWK K DH + G + G + + G L
Sbjct: 131 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGD-EFGVVGRLFAR 189
Query: 61 DAKTGRILWQTFMLPDNFGKLNEYAGAAIWG----------------------------S 92
D TG +W + + G+LN
Sbjct: 190 DPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ 249
Query: 93 SPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDT 152
S S D N + + GN R + N P D +++ + +D +
Sbjct: 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGN----PHDYD-----SLYTSGQVGVDPSS 300
Query: 153 GKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHD------ 206
G++ W+ Q D W + N + D +A D
Sbjct: 301 GEVKWFYQHTPNDAWDFSGNN--ELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKL 358
Query: 207 -------------------IVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAA 247
V++ G L ++E P LGG A
Sbjct: 359 QNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMA 418
Query: 248 TD-ERRIYTNIANSQHKNFNLKPSKNSTIA-----------------GGWVAMDASNGNV 289
+ ++ AN +++ + + + G AMD +G V
Sbjct: 419 YSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKV 478
Query: 290 LWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV 349
+W + A G + A ++F G+ G A D K+GK LW + TG+ I
Sbjct: 479 VWEHKEHLPLWA-GVLATAGNLVFTGTG--DGYFKAFDAKSGKELWKFQTGSGIVSPPIT 535
Query: 350 --SNGCIYM------GNGYKVTVGF---GNKNFTSGTSLYAF 380
+G Y+ G + G + G S + F
Sbjct: 536 WEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQGGSFWVF 577
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 582 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.8 bits (102), Expect = 3e-05
Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 5/81 (6%)
Query: 291 WSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA---TIYGGA 347
+S D V++GV++ ++Y + ++A+D KTGK LW+Y+
Sbjct: 50 YSFGDEKQRGQESQAIVSDGVIYVTASYSR--LFALDAKTGKRLWTYNHRLPDDIRPCCD 107
Query: 348 SVSNGCIYMGNGYKVTVGFGN 368
V+ G G+ +
Sbjct: 108 VVNRGAAIYGDKVFFGTLDAS 128
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 81.6 bits (200), Expect = 2e-17
Identities = 75/459 (16%), Positives = 138/459 (30%), Gaps = 126/459 (27%)
Query: 4 RSNGKLVWKTKLDDHARSF-ITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDA 62
GK +W + D A+ + IT + KG +G E +G ++ DA
Sbjct: 134 AKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE--------YGVRGFVSAYDA 185
Query: 63 KTGRILWQTFMLPDNFGKL-------------------NEYAGAAIWGSSPSIDPIRNHV 103
TG++ W+ + +P + G +W S + DP + +
Sbjct: 186 DTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVW-DSMAYDPELDLL 244
Query: 104 YIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGG 163
Y+ TGN +R +N + +S+LA+ DTGK+ W+ Q+
Sbjct: 245 YVGTGNGSPWNREVRSPGGGDN--------------LYLSSILAIRPDTGKLAWHYQVTP 290
Query: 164 YDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRD 223
D W + + + +++ K+GF + LDR
Sbjct: 291 GDSWDFTATQQITLAE------------------LNIDGKPRKVLMQAPKNGFFYVLDRT 332
Query: 224 SGSLIWSMEAGPG------------------------------GLGGGAMWGAATDERRI 253
+G LI + + G G W + +
Sbjct: 333 NGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGT 392
Query: 254 YTNIANSQHKNFNLKPSKNS----------------------TIAGGWVAMDASNGNVLW 291
Q + ++G +A D W
Sbjct: 393 GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAW 452
Query: 292 STADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-- 349
P++ G ++ A ++F G+ G ++A G+ LW ++ + I
Sbjct: 453 KVPYPTHWNG-GTLSTAGNLVFQGTA--AGQMHAYSADKGEALWQFEAQSGIVAAPMTFE 509
Query: 350 SNGCIYM------GNGYKVTVGF--GNKNFTSGTSLYAF 380
G Y+ G +T G + + L F
Sbjct: 510 LAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVF 548
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} Length = 560 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Score = 44.6 bits (104), Expect = 2e-05
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 289 VLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS 348
+ W + +GV++ ++ + + A+D +GK LW YD +
Sbjct: 46 LAWYMDLDNTRGLEATPLFHDGVIYTSMSWSR--VIAVDAASGKELWRYDPEVAKVKART 103
Query: 349 VSNGCIYMGNGY 360
+ G
Sbjct: 104 SCCDAVNRGVAL 115
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 78.1 bits (191), Expect = 2e-16
Identities = 81/448 (18%), Positives = 129/448 (28%), Gaps = 94/448 (20%)
Query: 1 AVKRSNGKLVWKTKLDDHARSFITMSG--TYYKGAYYVGTSSIEEGLTFELCCTFQGSLA 58
A+ + GK VW + + +T++G +KG +G +G +
Sbjct: 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGA--------EYGVRGYIT 193
Query: 59 KLDAKTGRILWQTFMLPDNFGKLNE--------------------YAGAAIWGSSPSIDP 98
DA+TG W+ F +P + K E G +W S + D
Sbjct: 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDS-MTFDA 252
Query: 99 IRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWY 158
N +Y+ TGN +R + +N + S++ALD DTGK W+
Sbjct: 253 ELNTMYVGTGNGSPWSHKVRSPKGGDN--------------LYLASIVALDPDTGKYKWH 298
Query: 159 KQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSM--------YRNKVKHDIVVA 210
Q D W + + + V
Sbjct: 299 YQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPV 358
Query: 211 VQKSGFAWALDRDSGSLIWSMEAG---PGGLGGGAMWGAATDERRIYTNIANSQHKNFNL 267
SG+ + G G W + + +Q+ NL
Sbjct: 359 NWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNL 418
Query: 268 KPSK-----------------------------NSTIAGGWVAMDASNGNVLWSTADPSN 298
K S G +A D WS S
Sbjct: 419 MDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSP 478
Query: 299 GTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS--VSNGCIYM 356
G +T A V+F G+ G + A TG+ LW TG + S + +G Y+
Sbjct: 479 WNG-GTLTTAGNVVFQGTA--DGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYV 535
Query: 357 ----GNGYKVTVGFGNKNFTSGTSLYAF 380
G G + ++Y F
Sbjct: 536 SVAVGWGGVYGLAARATERQGPGTVYTF 563
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} Length = 573 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Score = 44.2 bits (103), Expect = 2e-05
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
Query: 289 VLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS 348
+ WS S V +G+++ +++ ++A+D +TG +W+YD G
Sbjct: 57 LAWSYNLESTRGVEATPVVVDGIMYVSASWSV--VHAIDTRTGNRIWTYDPQIDRSTGFK 114
Query: 349 VSNGCIYMGNGY 360
+ G
Sbjct: 115 GCCDVVNRGVAL 126
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 77.3 bits (189), Expect = 5e-16
Identities = 72/443 (16%), Positives = 127/443 (28%), Gaps = 137/443 (30%)
Query: 1 AVKRSNGKLVWKTKL-DDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ GK+ W+ ++ D S +T + K +G S E +G++
Sbjct: 129 ALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAE--------LGVRGAVNA 180
Query: 60 LDAKTGRILWQTFMLPDN--------------------------FGKLNEYAGAAIWGSS 93
D KTG + W+ F + G + G WG
Sbjct: 181 FDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGW- 239
Query: 94 PSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTG 153
+ DP N Y +GN +R + + ++ DLDTG
Sbjct: 240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNK-----------------WTMTIWGRDLDTG 282
Query: 154 KIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213
W Q +D W D ++ N ++ + +
Sbjct: 283 MAKWGYQKTPHDEW------------------DFAGVNQMVLTDQPVNGKMTPLLSHIDR 324
Query: 214 SGFAWALDRDSGSLIWSMEAGP----------------------------------GGLG 239
+G + L+R++G+LI + + P +G
Sbjct: 325 NGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMG 384
Query: 240 GGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGW-------------------- 279
+ D T A H + +P AG +
Sbjct: 385 FHNQGVDSYDPES-RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEM 443
Query: 280 ---VAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWS 336
A D + G W+ + G + G+++ + G + A+D K GK LW+
Sbjct: 444 GQIRAFDLTTGKAKWTKWEKFAAWG-GTLYTKGGLVWYATL--DGYLKALDNKDGKELWN 500
Query: 337 YDTGATIYGGASVSNGCIYMGNG 359
+ + G Y G
Sbjct: 501 FKMPSGGIGSPM-----TYSFKG 518
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 64.2 bits (155), Expect = 8e-12
Identities = 69/439 (15%), Positives = 115/439 (26%), Gaps = 119/439 (27%)
Query: 4 RSNGKLVWKTKLDDHARSFITMSG-------TYYKGAYYVGTSSIE-------------- 42
GK+VW+ K A + M Y G ++
Sbjct: 81 NDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINWE 140
Query: 43 -----------------------EGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDN-- 77
+G++ D KTG + W+ F +
Sbjct: 141 VEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDS 200
Query: 78 ------------------------FGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSV 113
G + G WG + DP N Y +GN
Sbjct: 201 VRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWG-WYAYDPKLNLFYYGSGNPAPW 259
Query: 114 PLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNW 173
+R + + ++ DLDTG W Q +D W
Sbjct: 260 NETMRPGDNK-----------------WTMTIWGRDLDTGMAKWGYQKTPHDEW------ 296
Query: 174 YLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEA 233
D ++ N ++ + ++G + L+R++G+LI + +
Sbjct: 297 ------------DFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV 344
Query: 234 GPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293
P + R HK N+ PS G + D + +
Sbjct: 345 DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGL 404
Query: 294 ADPSNGTAPGPVTVANGVLFGGSTYRQ------------GPIYAMDVKTGKILWSYDTGA 341
P + G F G+T G I A D+ TGK W+
Sbjct: 405 NHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF 464
Query: 342 TIYGGA-SVSNGCIYMGNG 359
+GG G ++
Sbjct: 465 AAWGGTLYTKGGLVWYATL 483
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 571 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 39.9 bits (92), Expect = 5e-04
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 289 VLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVK-TGKILWSYDTGATIYGGA 347
WS + G V +++ S + YA+++ GKI+W + A
Sbjct: 42 AAWSFSTGVLNGHEGAPLVIGDMMYVHSAFP-NNTYALNLNDPGKIVWQHKPKQDASTKA 100
Query: 348 SVSNGCIYMGNGY 360
+ + G Y
Sbjct: 101 VMCCDVVDRGLAY 113
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 75.0 bits (183), Expect = 2e-15
Identities = 68/427 (15%), Positives = 116/427 (27%), Gaps = 102/427 (23%)
Query: 1 AVKRSNGKLVWKTKLDDHARS-FITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAK 59
A+ G+ VWK + D +T++ K +G+ +G L
Sbjct: 135 ALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGS--------SGAELGVRGYLTA 186
Query: 60 LDAKTGRILWQTFMLPDNF--------------------------GKLNEYAGAAIWGSS 93
D KTG +W+ + + G + G WG
Sbjct: 187 YDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWG-W 245
Query: 94 PSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTG 153
+ DP N +Y TGN +R + ++ D DTG
Sbjct: 246 YAYDPGTNLIYFGTGNPAPWNETMRPGD-----------------NKWTMTIFGRDADTG 288
Query: 154 KIVWYKQLGGYDVWFGACNWY--LNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV 211
+ + Q +D W A L+ +Y +V+
Sbjct: 289 EAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348
Query: 212 QK----SGFAWALDRDSGSLIWSMEAGPG----------GLGGGAMWGAATDERRIYTNI 257
K ++D +G + E G G G + + +
Sbjct: 349 NKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFF 408
Query: 258 ANSQHKNFNLKPSKNSTIAGGW-------------------------VAMDASNGNVLWS 292
H + +P AG + A +A G+ W
Sbjct: 409 MGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWE 468
Query: 293 TADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNG 352
+ G + A ++F G+ G + A D TG +LW + + G
Sbjct: 469 KMERFAVWG-GTMATAGDLVFYGTL--DGYLKARDSDTGDLLWKFKIPSGAIGYPMT--- 522
Query: 353 CIYMGNG 359
Y G
Sbjct: 523 --YTHKG 527
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} Length = 596 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Score = 37.2 bits (85), Expect = 0.003
Identities = 11/72 (15%), Positives = 20/72 (27%)
Query: 289 VLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS 348
W+ + G V +G ++ +++ G ILW A
Sbjct: 42 PAWTFSTGLLNGHEGAPLVVDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAV 101
Query: 349 VSNGCIYMGNGY 360
+ G Y
Sbjct: 102 ACCDLVNRGLAY 113
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 382 | |||
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 100.0 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 100.0 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 100.0 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 100.0 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 100.0 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.96 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 99.95 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 99.95 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 99.95 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.23 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.07 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.04 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.93 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.85 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.73 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 98.71 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.69 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.68 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.64 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 98.61 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.6 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.6 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.58 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.51 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 98.51 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.44 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.43 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 98.43 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.41 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.39 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.39 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.28 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 98.24 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 98.23 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.2 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.19 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.1 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.09 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 98.06 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 98.04 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 98.04 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 98.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.98 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.97 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 97.88 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 97.87 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 97.77 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 97.76 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.63 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 97.49 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 97.36 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.22 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 96.86 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.84 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 96.78 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 96.75 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.72 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.45 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 96.42 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 96.42 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 96.39 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 96.38 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 96.27 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 96.17 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 96.12 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 95.95 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.48 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 95.44 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 95.21 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 94.78 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 94.27 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 94.18 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 93.67 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 93.61 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 89.54 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 88.85 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 87.4 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 86.81 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 85.16 | |
| d1dlpa2 | 120 | Fetuin-binding protein Scafet precursor {Bluebell | 82.72 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 82.55 |
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=100.00 E-value=1.4e-34 Score=292.31 Aligned_cols=335 Identities=22% Similarity=0.359 Sum_probs=252.8
Q ss_pred CCcCCCCceeeeeecCc-CccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDD-HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~-~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
|||++|||++|++.+.+ .....+.++|++.+++||++....+... .|.|+|||++||+++|+++..+....
T Consensus 129 alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~--------~G~v~a~D~~TG~~~W~~~t~~~~~~ 200 (571)
T d2ad6a1 129 ALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGV--------RGAVNAFDLKTGELKWRAFATGSDDS 200 (571)
T ss_dssp EEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTC--------CCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred eeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccc--------cCcEEEEECCCCcEEEEEeccCCccc
Confidence 68999999999998754 3456688999999999999998766653 88999999999999999886542110
Q ss_pred --------------------------CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 80 --------------------------KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 80 --------------------------~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
....+.++.+|. .+.+|+..+++|+++++.. |....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~-~~s~D~~~g~~y~~tg~~~-----------------p~~~~ 262 (571)
T d2ad6a1 201 VRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWG-WYAYDPKLNLFYYGSGNPA-----------------PWNET 262 (571)
T ss_dssp HTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCS-CCEEETTTTEEEEECCCCS-----------------CSCGG
T ss_pred ccccccccccccccCcccccccccCCcccccCCCcccc-ccccchhcCeeeeeccccc-----------------Ccccc
Confidence 001235677886 6899999999999998742 23333
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
.|...+.+...++|||.+|||++|.++...++.|. ++....|++.++..+|.....++..++
T Consensus 263 ~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd------------------~D~~~~~~l~~~~~~g~~~~~v~~~~k 324 (571)
T d2ad6a1 263 MRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD------------------FAGVNQMVLTDQPVNGKMTPLLSHIDR 324 (571)
T ss_dssp GSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC------------------CCCCCCCEEEEEEETTEEEEEEEEECT
T ss_pred ccccccccccceeeeeccchhheecccccCccccc------------------cccccccceeeeeccCccccceeeccc
Confidence 45566777799999999999999999999999884 455578889888888877778899999
Q ss_pred CcEEEEEeCCCCCeeeeeccCCC---------------------------------CCCCCcccceee---eCCeEEEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPG---------------------------------GLGGGAMWGAAT---DERRIYTNI 257 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~---------------------------------~~~g~~~~~~~~---~~~~v~~~~ 257 (382)
+|.+++||++||+++|..+..+. ...|...|++.. +.+++|+..
T Consensus 325 ~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~ 404 (571)
T d2ad6a1 325 NGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGL 404 (571)
T ss_dssp TSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEE
T ss_pred cceEEEEecCCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEec
Confidence 99999999999999998654321 123445555443 467888876
Q ss_pred cCcccc------c-----------ccc--CCCC-CCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeee
Q 040693 258 ANSQHK------N-----------FNL--KPSK-NSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGST 317 (382)
Q Consensus 258 ~~~~~~------~-----------~~~--~~~~-~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (382)
.+.... . ... .|.. .....|.|.|+|++|||++|+++.+. ...+++++..+++||+++.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~-~~~~g~l~TagglVf~G~~ 483 (571)
T d2ad6a1 405 NHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYTKGGLVWYATL 483 (571)
T ss_dssp ECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEEECT
T ss_pred cccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCC-CCCcceeEecCCEEEEECC
Confidence 542100 0 000 0110 12234789999999999999998876 3567888889999999884
Q ss_pred cCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeE---------------------ee--cCCccCC
Q 040693 318 YRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVT---------------------VG--FGNKNFT 372 (382)
Q Consensus 318 ~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~---------------------~~--~~~~~~~ 372 (382)
++.|+|||.+|||+||+++++....++|+. .||++||....|.- .. -+.-.++
T Consensus 484 --dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqYi~v~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (571)
T d2ad6a1 484 --DGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSMYGVGGWPGVGLVFDLTDPSAGLGAVGAFRELQNHTQ 561 (571)
T ss_dssp --TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTTTHHHHTTCCCTTGGGGHHHHTTTGGGTCC
T ss_pred --CCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEEEEEEeccCCcccccccccccCcccccccccccccccccCC
Confidence 999999999999999999999999999984 79999996543310 00 0112346
Q ss_pred CCCeEEEEEC
Q 040693 373 SGTSLYAFCV 382 (382)
Q Consensus 373 ~g~~l~~~~~ 382 (382)
.|..|++|.|
T Consensus 562 ~g~~l~vf~l 571 (571)
T d2ad6a1 562 MGGGLMVFSL 571 (571)
T ss_dssp CCCEEEEEEC
T ss_pred CCCEEEEEeC
Confidence 7999999987
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=100.00 E-value=3.2e-34 Score=290.72 Aligned_cols=312 Identities=23% Similarity=0.350 Sum_probs=239.1
Q ss_pred CCcCCCCceeeeeecCc-CccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCC-
Q 040693 1 AVKRSNGKLVWKTKLDD-HARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNF- 78 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~-~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~- 78 (382)
|||++|||++|++...+ .....+.++|++++++||++.+..+.. +.|.|+|||++||+++|++.+.+...
T Consensus 135 Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~--------~~G~v~A~Da~TG~~~W~~~t~~~~~~ 206 (596)
T d1w6sa_ 135 ALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELG--------VRGYLTAYDVKTGEQVWRAYATGPDKD 206 (596)
T ss_dssp EEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGT--------CCCEEEEEETTTCCEEEEEESSSCHHH
T ss_pred eeccccCceeccccccccccccccccCCcEECCeEEEeecccccc--------ccCceEEEECCCCcEEEEeeccCCccc
Confidence 68999999999998653 335568899999999999998765544 38999999999999999988754210
Q ss_pred -------------------------CCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 79 -------------------------GKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 79 -------------------------~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
.......++.+|. .+.+|+..+++|+++++.. |....
T Consensus 207 ~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~-~~s~D~~~~lvy~~tg~~~-----------------p~~~~ 268 (596)
T d1w6sa_ 207 LLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWG-WYAYDPGTNLIYFGTGNPA-----------------PWNET 268 (596)
T ss_dssp HTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCS-CCEEETTTTEEEEECCCCS-----------------CSCGG
T ss_pred cccccccccccccccccccccccCCCCceecCCCcccc-ccccccCCCeeeccccccc-----------------ccccc
Confidence 0011236777886 6899999999999998842 23333
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEe-eeCceeecEEEEEc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSM-YRNKVKHDIVVAVQ 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~g~~~~~v~~~~ 212 (382)
.|..++.+...|+|||++|||++|.++...++.|+| +....|++.+. ..+|.....++..+
T Consensus 269 ~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~------------------d~~~~~~l~d~~~~~G~~~~~v~~~~ 330 (596)
T d1w6sa_ 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY------------------AGVNVMMLSEQKDKDGKARKLLTHPD 330 (596)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC------------------CCCCCCEEEEEECTTSCEEEEEEEEC
T ss_pred cccccccccccccccccccccccccccceeccccCC------------------ccccceeeeeccccccccccceeccc
Confidence 456677788999999999999999999999999954 44578888875 46777778899999
Q ss_pred cCcEEEEEeCCCCCeeeeeccCC---------------------------------CCCCCCcccceee---eCCeEEEE
Q 040693 213 KSGFAWALDRDSGSLIWSMEAGP---------------------------------GGLGGGAMWGAAT---DERRIYTN 256 (382)
Q Consensus 213 ~~g~l~ald~~tG~~~W~~~~~~---------------------------------~~~~g~~~~~~~~---~~~~v~~~ 256 (382)
++|.+++||+.||+++|..+... +...+...|.... +.+++|+.
T Consensus 331 k~G~~~vlDr~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp 410 (596)
T d1w6sa_ 331 RNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMG 410 (596)
T ss_dssp TTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEE
T ss_pred cccceeeecCCCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEec
Confidence 99999999999999999866421 1123344455443 56778887
Q ss_pred ecCccc------------c-----cccc--CCCC---CCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEE
Q 040693 257 IANSQH------------K-----NFNL--KPSK---NSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFG 314 (382)
Q Consensus 257 ~~~~~~------------~-----~~~~--~~~~---~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~ 314 (382)
..+... . .+.. .|.. .....|.|.|+|+.|||++|+...+. ...+++++.++++||.
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~-~~~gg~lsTagglVF~ 489 (596)
T d1w6sa_ 411 INHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF-AVWGGTMATAGDLVFY 489 (596)
T ss_dssp EECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEETTTEEEE
T ss_pred ccccccccccccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCCCC-CCccceeEecCCEEEE
Confidence 654210 0 0000 1111 01224789999999999999998776 3567888888999999
Q ss_pred eeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeC
Q 040693 315 GSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNG 359 (382)
Q Consensus 315 ~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~ 359 (382)
++. +|.|+|+|++|||+||+++++.++.++|+. ++|+.||.-.
T Consensus 490 G~~--Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQYvav~ 534 (596)
T d1w6sa_ 490 GTL--DGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYVAIY 534 (596)
T ss_dssp ECT--TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred ECC--CCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEEEEEEE
Confidence 885 999999999999999999999999999985 8999999743
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=100.00 E-value=3.5e-34 Score=288.89 Aligned_cols=338 Identities=22% Similarity=0.380 Sum_probs=255.1
Q ss_pred CCcCCCCceeeeeecCcC-ccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDH-ARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~-~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
|||++|||++|++...+. ....+.++|++.++.|+++....+ |..+|.|+|||++||+++|++++.++...
T Consensus 131 Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~--------~~~~G~v~a~D~~TG~~~W~~~t~~~~~~ 202 (560)
T d1kv9a2 131 ALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAE--------YGVRGFVSAYDADTGKLAWRFYTVPGDPA 202 (560)
T ss_dssp EEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTT--------TCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred EEECCCCcEEeccCccCcccceeeeeeeeeecCccccccccee--------ccccceEEEEECCCceEEeeeeecccccc
Confidence 689999999999987543 344567899999999999886433 44589999999999999999998665433
Q ss_pred CCCC-------------------CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCC
Q 040693 80 KLNE-------------------YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPEN 140 (382)
Q Consensus 80 ~~~~-------------------~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (382)
.+.. .+|+.+|. .+.+|+.++++|+++++....+...+ ..+..++.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~-~~s~D~~~~l~y~~tgn~~~~~~~~~--------------~~~~g~n~ 267 (560)
T d1kv9a2 203 LPYEHPELREAAKTWQGDQYWKLGGGGTVWD-SMAYDPELDLLYVGTGNGSPWNREVR--------------SPGGGDNL 267 (560)
T ss_dssp SCCSSHHHHHHHTTCCSSCHHHHCEECCCCS-CEEEETTTTEEEEECCCEESSCHHHH--------------STTCCCCT
T ss_pred CCccccccccccccccccccccccCCCCccc-ccccccccCeeeecCCCCcccccccc--------------cccCCccc
Confidence 2211 25788896 58999999999999998543222110 12234566
Q ss_pred CcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEE
Q 040693 141 HSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWAL 220 (382)
Q Consensus 141 ~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~al 220 (382)
+...|+|||++||+++|.++...++.|.+ +....|.+.++..+|.....++..+++|.+++|
T Consensus 268 ~s~sivAld~~tG~~~W~~Q~~~~D~wd~------------------d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~l 329 (560)
T d1kv9a2 268 YLSSILAIRPDTGKLAWHYQVTPGDSWDF------------------TATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (560)
T ss_dssp TTTEEEEECTTTCCEEEEEESSTTCCSCC------------------CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred cceeeEEecCCccceeEEEeccccccccc------------------cccceeeeeeeecCCceeeeeeecCccceEEEE
Confidence 67899999999999999999999999854 445789999988888778889999999999999
Q ss_pred eCCCCCeeeeeccCC------------------------------CCCCCCcccceee---eCCeEEEEecCccc-----
Q 040693 221 DRDSGSLIWSMEAGP------------------------------GGLGGGAMWGAAT---DERRIYTNIANSQH----- 262 (382)
Q Consensus 221 d~~tG~~~W~~~~~~------------------------------~~~~g~~~~~~~~---~~~~v~~~~~~~~~----- 262 (382)
|++||+++|..+..+ +...|...|.+.. +.+++|+...+...
T Consensus 330 Dr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~ 409 (560)
T d1kv9a2 330 DRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNE 409 (560)
T ss_dssp ETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCC
T ss_pred ecCCCcccccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeecc
Confidence 999999999887543 2234556666554 56778887654210
Q ss_pred -------cccccCCC------C-CCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeC
Q 040693 263 -------KNFNLKPS------K-NSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDV 328 (382)
Q Consensus 263 -------~~~~~~~~------~-~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~ 328 (382)
..+..... . .....|.|.|+|+.|||++|+++.+. ...++++...+++||+++. +|.|+|||.
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~TagglVF~G~~--dg~l~A~Da 486 (560)
T d1kv9a2 410 GKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLSTAGNLVFQGTA--AGQMHAYSA 486 (560)
T ss_dssp GGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECT--TSEEEEEET
T ss_pred ccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCC-CCCCceeEECCCEEEEECC--CCcEEEEEC
Confidence 00100000 0 01224789999999999999999876 3567788888999999885 999999999
Q ss_pred CCCcEeEEEecCCceecceEE--eCCEEEEEeCc--eeEee------cCCccCCCCCeEEEEEC
Q 040693 329 KTGKILWSYDTGATIYGGASV--SNGCIYMGNGY--KVTVG------FGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 329 ~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~--g~~~~------~~~~~~~~g~~l~~~~~ 382 (382)
+|||+||+++++.++.++|+. ++|+.||.-.. |.... .......+|..|++|.|
T Consensus 487 ~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~L 550 (560)
T d1kv9a2 487 DKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFAL 550 (560)
T ss_dssp TTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEE
T ss_pred CCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEEe
Confidence 999999999999999999987 89999986432 22111 12345577899999986
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=100.00 E-value=1.5e-33 Score=285.13 Aligned_cols=338 Identities=25% Similarity=0.359 Sum_probs=251.6
Q ss_pred CCcCCCCceeeeeecCcCc--cceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCC
Q 040693 1 AVKRSNGKLVWKTKLDDHA--RSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNF 78 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~--~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~ 78 (382)
|||++|||++|++.+.+.. ...+.++|++.++.|+++....+.. ..|.|+|||++||+++|++++.+...
T Consensus 142 alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~--------~~G~v~a~D~~TG~~~W~~~t~~~~~ 213 (573)
T d1kb0a2 142 ALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYG--------VRGYITAYDAETGERKWRWFSVPGDP 213 (573)
T ss_dssp EEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTC--------CBCEEEEEETTTCCEEEEEESSCCCT
T ss_pred eeccccccceecccCccCCcceEEeecceEEEeccEEEeecccccc--------ccceEEEEecCCccceeeeeeccccC
Confidence 6899999999999875432 2346788999999999988755443 37899999999999999998865443
Q ss_pred CCCC--------------------CCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCC
Q 040693 79 GKLN--------------------EYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEP 138 (382)
Q Consensus 79 ~~~~--------------------~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (382)
..+. ...|+.+|. .+.+|++.+++|+.+++....... ....+..+
T Consensus 214 ~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~-~~s~D~~~g~~~~~~g~~~~~~~~--------------~~~~~~g~ 278 (573)
T d1kb0a2 214 SKPFEDESMKRAARTWDPSGKWWEAGGGGTMWD-SMTFDAELNTMYVGTGNGSPWSHK--------------VRSPKGGD 278 (573)
T ss_dssp TSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCS-CEEEETTTTEEEEECCCEESSCHH--------------HHSTTCCC
T ss_pred CCCCCcccccccccccCCCCceeecCCCCcccc-cceEchhhCeeeeccCCCcccccc--------------cccccccc
Confidence 3221 135677886 689999999999999874322211 11223445
Q ss_pred CCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEE
Q 040693 139 ENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAW 218 (382)
Q Consensus 139 ~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ 218 (382)
+.+...|+|+|++||+++|.++....+.|.+. ....+++..+..+|.....++..+.+|.++
T Consensus 279 ~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d------------------~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~ 340 (573)
T d1kb0a2 279 NLYLASIVALDPDTGKYKWHYQETPGDNWDYT------------------STQPMILADIKIAGKPRKVILHAPKNGFFF 340 (573)
T ss_dssp CTTTTEEEEECTTTCCEEEEEESSTTCCSCCC------------------CCSCCEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred ccccceEEEecccchheeecccccCccccccc------------------ccceeeecceecCCCceeeeeeccccceeE
Confidence 66778999999999999999999999888554 446778888888887778889999999999
Q ss_pred EEeCCCCCeeeeeccCC-----------------------------CCCCCCcccceee---eCCeEEEEecCccccc--
Q 040693 219 ALDRDSGSLIWSMEAGP-----------------------------GGLGGGAMWGAAT---DERRIYTNIANSQHKN-- 264 (382)
Q Consensus 219 ald~~tG~~~W~~~~~~-----------------------------~~~~g~~~~~~~~---~~~~v~~~~~~~~~~~-- 264 (382)
+||++||+.+|..+..+ +...+...|.+.. +.+.+|+...+.....
T Consensus 341 ~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 420 (573)
T d1kb0a2 341 VLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMD 420 (573)
T ss_dssp EEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEE
T ss_pred EeccccccccccccccccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeec
Confidence 99999999999876432 1134455566544 4677888755421100
Q ss_pred -------------------cc-----cCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCC
Q 040693 265 -------------------FN-----LKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQ 320 (382)
Q Consensus 265 -------------------~~-----~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 320 (382)
+. ..........|.|.|+|+.|||++|+++.+. +...+++++++++||+++. +
T Consensus 421 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~--d 497 (573)
T d1kb0a2 421 DKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTA--D 497 (573)
T ss_dssp CTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECT--T
T ss_pred ccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECC--C
Confidence 00 0000011224789999999999999998876 3456788888999999885 9
Q ss_pred CcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCcee--Ee--ecCCccCCCCCeEEEEEC
Q 040693 321 GPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKV--TV--GFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 321 g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~--~~--~~~~~~~~~g~~l~~~~~ 382 (382)
|.|+|||.+|||+||+++++.++.++|+. ++|++||.-..|. .. ..+......|..||+|.|
T Consensus 498 g~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~~~~F~l 565 (573)
T d1kb0a2 498 GRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVV 565 (573)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEE
T ss_pred CeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccCCCCCEEEEEEe
Confidence 99999999999999999999999999985 8999998644332 11 124667788999999975
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6e-31 Score=266.33 Aligned_cols=343 Identities=23% Similarity=0.365 Sum_probs=239.7
Q ss_pred CCcCCCCceeeeeecCcCc-cceeeeceEEEcC-----EEEEeccCccccccccccccccceEEEEeCccCceeeeeecc
Q 040693 1 AVKRSNGKLVWKTKLDDHA-RSFITMSGTYYKG-----AYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFML 74 (382)
Q Consensus 1 ald~~tGk~~W~~~~~~~~-~~~~~~~p~v~~~-----~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~ 74 (382)
|||++|||++|+..+.+.. .....++|.+..+ .+++..... .+|...+.|+|+|++||+++|++...
T Consensus 131 alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~-------~~~~~~g~v~a~d~~tG~~~W~~~~~ 203 (582)
T d1flga_ 131 ALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSG-------DEFGVVGRLFARDPDTGEEIWMRPFV 203 (582)
T ss_dssp EEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBC-------GGGCCBCEEEEECTTTCCEEEEEESS
T ss_pred EecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccc-------cccccccceEEecCCCCcEEEEEecc
Confidence 6899999999999986532 3345677877653 344433221 23445789999999999999999875
Q ss_pred CCCCC-----------------------------CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccC
Q 040693 75 PDNFG-----------------------------KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENN 125 (382)
Q Consensus 75 ~~~~~-----------------------------~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~ 125 (382)
+.... ....++|+.+|. ++.+|+..+++|+++++........+ ..
T Consensus 204 ~~~~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~-~~s~D~~~~~vy~~tgn~~p~~~~~~--~~--- 277 (582)
T d1flga_ 204 EGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQ-SASFDAETNTIIVGAGNPGPWNTWAR--TA--- 277 (582)
T ss_dssp TTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCS-CCEEETTTTEEEEEECCBSSSCGGGG--SC---
T ss_pred CCccccccccccccccccccccCCCccccccCCccceecCCCcccc-cceeccccceEEeccCCccccccccc--cc---
Confidence 43210 001246888897 69999999999999988422111100 00
Q ss_pred CCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEee-eCcee
Q 040693 126 QTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMY-RNKVK 204 (382)
Q Consensus 126 ~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~g~~ 204 (382)
.....+..++.+...++|||++||+++|.++...++.|. ++..+.|++.++. .++..
T Consensus 278 ----~g~~~~~~dn~ys~SvvAld~~tG~~~W~~q~~~~D~wd------------------~d~~~~p~l~d~~~~~g~~ 335 (582)
T d1flga_ 278 ----KGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWD------------------FSGNNELVLFDYKAKDGKI 335 (582)
T ss_dssp ----TTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSC------------------CCCCCCCEEEEEECSSSCE
T ss_pred ----CCCCcCcccccccceeEEecccchhhhhccccccccccc------------------ccccccccccccccccccc
Confidence 001122334557789999999999999999999999994 4556889999876 35655
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCC---------------------------------------CCCCCCcccc
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGP---------------------------------------GGLGGGAMWG 245 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~---------------------------------------~~~~g~~~~~ 245 (382)
...++..++++.++++|++||+++|..+... +...+...|.
T Consensus 336 ~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~ 415 (582)
T d1flga_ 336 VKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWN 415 (582)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSS
T ss_pred cceeEeecccccEEeecccCCcccccccccCccccccccccccccceeccccccccccccccccceEEECCCccCCcccc
Confidence 6778889999999999999999998654221 0112333444
Q ss_pred eee---eCCeEEEEecCcccccc-----------------ccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcce
Q 040693 246 AAT---DERRIYTNIANSQHKNF-----------------NLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPV 305 (382)
Q Consensus 246 ~~~---~~~~v~~~~~~~~~~~~-----------------~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~ 305 (382)
... +.+++|+...+...... ...|. .....|.|.|+|++|||++|+++.+.+ ..++++
T Consensus 416 ~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~G~l~AiD~~TG~i~W~~~~~~p-~~~g~l 493 (582)
T d1flga_ 416 PMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRM-YDDHVGSLRAMDPVSGKVVWEHKEHLP-LWAGVL 493 (582)
T ss_dssp CCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEES-CSSCSEEEEEECTTTCCEEEEEEESSC-CCSCCE
T ss_pred cceecCCCCceeeeccccccccccccccccccccccccCcccccc-ccCCCCeEEEEcCCCCcEEeecCCCCC-Ccccee
Confidence 332 35778877654211100 00000 013358899999999999999998763 567788
Q ss_pred EEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCc--eeEeecC-------CccCCCC
Q 040693 306 TVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGY--KVTVGFG-------NKNFTSG 374 (382)
Q Consensus 306 ~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~--g~~~~~~-------~~~~~~g 374 (382)
+.++++||+++. +|.++|||.+|||+||+++++.+..++|+. ++|+.||...- |...++. ......|
T Consensus 494 stagglVF~Gt~--dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~ag~g~~~~~~~g~~~~~~~~~~~g 571 (582)
T d1flga_ 494 ATAGNLVFTGTG--DGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVTVGYGGAVPLWGGDMADLTRPVAQG 571 (582)
T ss_dssp EETTTEEEEECT--TSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCTHHHHHHTTCCCC
T ss_pred EEcCCeEEEeCC--CCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCCccccccccccccccccCCC
Confidence 889999999885 999999999999999999999999999987 79999986432 2211111 1235679
Q ss_pred CeEEEEEC
Q 040693 375 TSLYAFCV 382 (382)
Q Consensus 375 ~~l~~~~~ 382 (382)
..|++|+|
T Consensus 572 ~~l~vF~L 579 (582)
T d1flga_ 572 GSFWVFKL 579 (582)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEeC
Confidence 99999987
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=99.96 E-value=4.7e-27 Score=236.41 Aligned_cols=294 Identities=21% Similarity=0.346 Sum_probs=192.3
Q ss_pred CCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCc
Q 040693 6 NGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYA 85 (382)
Q Consensus 6 tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~ 85 (382)
+-|+.|++.++.. ..++++|++.+++||+++. ++.|+|||++||+++|+++.............
T Consensus 43 ~L~~aW~~~~~~~--~~~~stPiv~~g~vyv~t~--------------~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~ 106 (560)
T d1kv9a2 43 SLGLAWYMDLDNT--RGLEATPLFHDGVIYTSMS--------------WSRVIAVDAASGKELWRYDPEVAKVKARTSCC 106 (560)
T ss_dssp GEEEEEEEECSCC--SCCCCCCEEETTEEEEEEG--------------GGEEEEEETTTCCEEEEECCCCCGGGGGGCTT
T ss_pred cceEEEEEECCCC--CCcEeCCEEECCEEEEECC--------------CCeEEEEeCCCCCEEEEECCCCCccccccccc
Confidence 4578899998653 3367899999999999886 89999999999999999875321110000000
Q ss_pred CccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCc
Q 040693 86 GAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYD 165 (382)
Q Consensus 86 g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 165 (382)
.. . ...+.+ .++.||+++.+ +.|+|||++||+++|++......
T Consensus 107 ~~-~-~~~~~~--~~~~v~~~~~~---------------------------------g~l~Alda~tG~~~w~~~~~~~~ 149 (560)
T d1kv9a2 107 DA-V-NRGVAL--WGDKVYVGTLD---------------------------------GRLIALDAKTGKAIWSQQTTDPA 149 (560)
T ss_dssp CS-C-CCCCEE--EBTEEEEECTT---------------------------------SEEEEEETTTCCEEEEEECSCTT
T ss_pred cc-c-ccCcce--eCCeEEEEeCC---------------------------------CEEEEEECCCCcEEeccCccCcc
Confidence 00 0 011222 24578887764 89999999999999999875432
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc------CcEEEEEeCCCCCeeeeeccCCCCC-
Q 040693 166 VWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK------SGFAWALDRDSGSLIWSMEAGPGGL- 238 (382)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~------~g~l~ald~~tG~~~W~~~~~~~~~- 238 (382)
. .+.+.+.|++. ++.|+++.. .|.|+|||++||+++|++...+...
T Consensus 150 ~-------------------~~~~~~~p~v~--------~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~ 202 (560)
T d1kv9a2 150 K-------------------PYSITGAPRVV--------KGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPA 202 (560)
T ss_dssp S-------------------SCBCCSCCEEE--------TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred c-------------------ceeeeeeeeee--------cCcccccccceeccccceEEEEECCCceEEeeeeecccccc
Confidence 1 22345778887 677777643 4789999999999999998653211
Q ss_pred ------------------------CCCcccceee---eCCeEEEEecCcccccccc--CCCCC-----------------
Q 040693 239 ------------------------GGGAMWGAAT---DERRIYTNIANSQHKNFNL--KPSKN----------------- 272 (382)
Q Consensus 239 ------------------------~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~--~~~~~----------------- 272 (382)
.+...|.... ..+++|+.+.+........ .....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~ 282 (560)
T d1kv9a2 203 LPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL 282 (560)
T ss_dssp SCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE
T ss_pred CCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccce
Confidence 1334455333 5688888876532110000 00001
Q ss_pred -------------------------------------CCCCceEEEEECCCCcEEeeecCCCC-----------------
Q 040693 273 -------------------------------------STIAGGWVAMDASNGNVLWSTADPSN----------------- 298 (382)
Q Consensus 273 -------------------------------------~~~~g~v~a~d~~tG~~~W~~~~~~~----------------- 298 (382)
....|.++++|.+||+++|..+....
T Consensus 283 ~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~~~~~~~ 362 (560)
T d1kv9a2 283 AWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAP 362 (560)
T ss_dssp EEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECT
T ss_pred eEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhccccccc
Confidence 12335566666666666666543210
Q ss_pred -----------------CCCCcceEEe--CCEEEEeeec----------------------------------CCCcEEE
Q 040693 299 -----------------GTAPGPVTVA--NGVLFGGSTY----------------------------------RQGPIYA 325 (382)
Q Consensus 299 -----------------~~~~~~~~~~--~~~v~~~~~~----------------------------------~~g~l~~ 325 (382)
...-.+..++ .+++|+.... ..|.|.|
T Consensus 363 ~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A 442 (560)
T d1kv9a2 363 GVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLA 442 (560)
T ss_dssp TTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEE
T ss_pred cccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEE
Confidence 0000122232 2456655420 1257999
Q ss_pred EeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 326 MDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 326 ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
+|+.|||++|+++.+....+.++. .+|.||+++.+|. |+|+|..||++||.|++
T Consensus 443 ~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~---l~A~Da~tGe~LW~~~l 497 (560)
T d1kv9a2 443 WDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQ---MHAYSADKGEALWQFEA 497 (560)
T ss_dssp EETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE---EEEEETTTCCEEEEEEC
T ss_pred EeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCc---EEEEECCCCcEeEEEEC
Confidence 999999999999998877766654 6889999988876 79999999999999985
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=99.95 E-value=1.4e-26 Score=233.63 Aligned_cols=295 Identities=19% Similarity=0.317 Sum_probs=188.5
Q ss_pred CCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCc
Q 040693 6 NGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYA 85 (382)
Q Consensus 6 tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~ 85 (382)
+-++.|++.++.. ..++++|++.+++||+++. ++.|+|||++||+++|+++...+..... ..
T Consensus 54 ~L~~aW~~~~~~~--~~~~stPiv~~g~vyv~t~--------------~~~v~AlDa~TG~~~W~~~~~~~~~~~~--~~ 115 (573)
T d1kb0a2 54 DLGLAWSYNLEST--RGVEATPVVVDGIMYVSAS--------------WSVVHAIDTRTGNRIWTYDPQIDRSTGF--KG 115 (573)
T ss_dssp GEEEEEEEECCCC--SCCCCCCEEETTEEEEECG--------------GGCEEEEETTTTEEEEEECCCCCGGGGG--GS
T ss_pred cceEEEEEECCCC--CCcEECCEEECCEEEEECC--------------CCeEEEEeCCCCCeEEEeCCCCCccccc--cc
Confidence 3467899988642 3367899999999999886 8899999999999999998632211100 00
Q ss_pred CccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCc
Q 040693 86 GAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYD 165 (382)
Q Consensus 86 g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~ 165 (382)
........+.+. .+.+|+++.+ +.|+|||++||+++|+.......
T Consensus 116 ~~~~~~~g~~~~--~~~v~~~t~~---------------------------------g~l~alda~tG~~~W~~~~~~~~ 160 (573)
T d1kb0a2 116 CCDVVNRGVALW--KGKVYVGAWD---------------------------------GRLIALDAATGKEVWHQNTFEGQ 160 (573)
T ss_dssp SSCSCCCCCEEE--TTEEEEECTT---------------------------------SEEEEEETTTCCEEEEEETTTTC
T ss_pred ccccccccceEE--CCcEEEEecc---------------------------------cceeeeccccccceecccCccCC
Confidence 000001123343 3578887754 89999999999999999875432
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc------CcEEEEEeCCCCCeeeeeccCCCC--
Q 040693 166 VWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK------SGFAWALDRDSGSLIWSMEAGPGG-- 237 (382)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~------~g~l~ald~~tG~~~W~~~~~~~~-- 237 (382)
.. .+.+.+.|++. ++.|+++.. .|.|+|||++||+++|++...+..
T Consensus 161 ~~------------------~~~~~~~p~v~--------~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~ 214 (573)
T d1kb0a2 161 KG------------------SLTITGAPRVF--------KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPS 214 (573)
T ss_dssp CS------------------SCBCCSCCEEE--------TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTT
T ss_pred cc------------------eEEeecceEEE--------eccEEEeeccccccccceEEEEecCCccceeeeeeccccCC
Confidence 11 22345778887 677777643 578999999999999998754321
Q ss_pred ------------------------CCCCccccee-e--eCCeEEEEecCccccccccC--CCCC----------------
Q 040693 238 ------------------------LGGGAMWGAA-T--DERRIYTNIANSQHKNFNLK--PSKN---------------- 272 (382)
Q Consensus 238 ------------------------~~g~~~~~~~-~--~~~~v~~~~~~~~~~~~~~~--~~~~---------------- 272 (382)
..+...|... + +.+++|+...+......... ....
T Consensus 215 ~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~ 294 (573)
T d1kb0a2 215 KPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGK 294 (573)
T ss_dssp SCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC
T ss_pred CCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchh
Confidence 0122334433 2 45778877655321111100 0011
Q ss_pred --------------------------------------CCCCceEEEEECCCCcEEeeecCCCC----------------
Q 040693 273 --------------------------------------STIAGGWVAMDASNGNVLWSTADPSN---------------- 298 (382)
Q Consensus 273 --------------------------------------~~~~g~v~a~d~~tG~~~W~~~~~~~---------------- 298 (382)
....|.++++|.+|||.+|..+....
T Consensus 295 ~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (573)
T d1kb0a2 295 YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIA 374 (573)
T ss_dssp EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECG
T ss_pred eeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccceeeee
Confidence 12334455566666665555432110
Q ss_pred -----------------CCCCcceEEe--CCEEEEeeec-----------------------------------------
Q 040693 299 -----------------GTAPGPVTVA--NGVLFGGSTY----------------------------------------- 318 (382)
Q Consensus 299 -----------------~~~~~~~~~~--~~~v~~~~~~----------------------------------------- 318 (382)
...-.+..++ .+++|+....
T Consensus 375 ~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~ 454 (573)
T d1kb0a2 375 AARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSK 454 (573)
T ss_dssp GGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSC
T ss_pred eccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCC
Confidence 0000111222 2455554320
Q ss_pred CCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 319 RQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 319 ~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.-|.|.|+|+.|||++|+++.+....++++. .+|.||+++.+|. ++|||+.||++||.|++
T Consensus 455 ~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~---l~A~Da~TGe~LW~~~~ 516 (573)
T d1kb0a2 455 PFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGR---LVAYHAATGEKLWEAPT 516 (573)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSE---EEEEETTTCCEEEEEEC
T ss_pred CcccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCe---EEEEECCCCcEeEEEEC
Confidence 0146999999999999999988776666555 6789999988876 79999999999999985
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.95 E-value=2.4e-26 Score=231.54 Aligned_cols=296 Identities=23% Similarity=0.320 Sum_probs=190.4
Q ss_pred CCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeC-ccCceeeeeeccCCCCCCCCC
Q 040693 5 SNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDA-KTGRILWQTFMLPDNFGKLNE 83 (382)
Q Consensus 5 ~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~-~tG~~lW~~~~~~~~~~~~~~ 83 (382)
++-|+.|++.+++. ..++++|++.++.||+++. .++.|+|||+ +||+++|+++...........
T Consensus 38 ~~L~~aW~~~~g~~--~~~~~tP~v~~g~vyv~t~-------------~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~ 102 (571)
T d2ad6a1 38 KNVKAAWSFSTGVL--NGHEGAPLVIGDMMYVHSA-------------FPNNTYALNLNDPGKIVWQHKPKQDASTKAVM 102 (571)
T ss_dssp GGCEEEEEEECSCC--SCCCSCCEEETTEEEEECS-------------TTTCEEEEETTCTTSEEEEECCCCCGGGGGGC
T ss_pred hhceEEEEEeCCCC--CCcccCCEEECCEEEEecC-------------CCCeEEEEeCCCCCceEEEecCCCCccccccc
Confidence 34678899998653 2367899999999999874 1578999998 589999998753222110000
Q ss_pred CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCC
Q 040693 84 YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGG 163 (382)
Q Consensus 84 ~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~ 163 (382)
..+ .....+++. ++.||+++.+ +.|+|||++|||++|++....
T Consensus 103 ~~~--~~~rg~a~~--~~~i~~~~~~---------------------------------g~l~alda~tG~~~w~~~~~~ 145 (571)
T d2ad6a1 103 CCD--VVDRGLAYG--AGQIVKKQAN---------------------------------GHLLALDAKTGKINWEVEVCD 145 (571)
T ss_dssp TTC--SCCCCCEEE--TTEEEEECTT---------------------------------SEEEEEETTTCCEEEEEECCC
T ss_pred ccC--cCCCcceee--CCeEEEEeCC---------------------------------CcEEeeehhhhhhhccccccc
Confidence 000 000123343 4678887754 899999999999999998754
Q ss_pred CcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc------CcEEEEEeCCCCCeeeeeccCCCC
Q 040693 164 YDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK------SGFAWALDRDSGSLIWSMEAGPGG 237 (382)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~------~g~l~ald~~tG~~~W~~~~~~~~ 237 (382)
... .+.+.++|++. ++.|+++.. .|.++|+|+.||+++|++...+..
T Consensus 146 ~~~-------------------~~~~t~~p~v~--------~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~ 198 (571)
T d2ad6a1 146 PKV-------------------GSTLTQAPFVA--------KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSD 198 (571)
T ss_dssp GGG-------------------TCBCCSCCEEE--------TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCH
T ss_pred ccc-------------------ccceeecCeEe--------CCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCc
Confidence 321 22355788888 678887764 689999999999999988654210
Q ss_pred --------------------------------CCCCcccceee---eCCeEEEEecCccccccccCCCCC----------
Q 040693 238 --------------------------------LGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKN---------- 272 (382)
Q Consensus 238 --------------------------------~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~---------- 272 (382)
..+...|.... +.+++|+...+.........++..
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld 278 (571)
T d2ad6a1 199 DSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRD 278 (571)
T ss_dssp HHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEE
T ss_pred ccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeee
Confidence 11223344222 467788776654321111111110
Q ss_pred -------------------------------------------CCCCceEEEEECCCCcEEeeecCCCC-----------
Q 040693 273 -------------------------------------------STIAGGWVAMDASNGNVLWSTADPSN----------- 298 (382)
Q Consensus 273 -------------------------------------------~~~~g~v~a~d~~tG~~~W~~~~~~~----------- 298 (382)
....|.++++|.+|||++|..+....
T Consensus 279 ~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~~~~~~ 358 (571)
T d2ad6a1 279 LDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKT 358 (571)
T ss_dssp TTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTT
T ss_pred ccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCcccccccccccc
Confidence 02234455555555555554322100
Q ss_pred --------------------------CCCCcceEEe--CCEEEEeeec--------------------------------
Q 040693 299 --------------------------GTAPGPVTVA--NGVLFGGSTY-------------------------------- 318 (382)
Q Consensus 299 --------------------------~~~~~~~~~~--~~~v~~~~~~-------------------------------- 318 (382)
...-.+..++ .+++|+....
T Consensus 359 ~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (571)
T d2ad6a1 359 GTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGP 438 (571)
T ss_dssp CSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTST
T ss_pred cccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCc
Confidence 0000112222 2455554320
Q ss_pred ---CCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 319 ---RQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 319 ---~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.-|.|.|+|++|||++|+.+.+...+++++. .+|.||+++.+|. |+|||.+|||+||.|++
T Consensus 439 ~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~---l~A~Da~tGe~lW~~~l 503 (571)
T d2ad6a1 439 TKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGY---LKALDNKDGKELWNFKM 503 (571)
T ss_dssp TSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSE---EEEEETTTCCEEEEEEC
T ss_pred ccCCcccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCe---EEEEECCCCcEEEEEEC
Confidence 1257999999999999999998877777766 7889999988876 79999999999999975
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1.7e-25 Score=226.10 Aligned_cols=300 Identities=24% Similarity=0.368 Sum_probs=195.4
Q ss_pred CCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCC
Q 040693 5 SNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEY 84 (382)
Q Consensus 5 ~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~ 84 (382)
++-|+.|++.+++......+++|++.+++||+++. ++.|+|||++||+++|+++...........
T Consensus 42 ~~L~~aW~~~~g~~~~~~~~stPiv~~g~vy~~t~--------------~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~- 106 (582)
T d1flga_ 42 FKLTPAWSYSFGDEKQRGQESQAIVSDGVIYVTAS--------------YSRLFALDAKTGKRLWTYNHRLPDDIRPCC- 106 (582)
T ss_dssp GGCEEEEEEECCTTCCSCCCCCCEEETTEEEEEET--------------TTEEEEEESSSCCEEEEEECCCCTTCCCSS-
T ss_pred hhceEEEEEeCCCCCCCCcccCCEEECCEEEEeCC--------------CCeEEEEeCCCCCeEEEEcCCCCCcccccc-
Confidence 35678899998754444467899999999999885 899999999999999999864322111100
Q ss_pred cCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCC
Q 040693 85 AGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGY 164 (382)
Q Consensus 85 ~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~ 164 (382)
+ .....+++. .+.+|+++.+ +.|+|||++||+++|+......
T Consensus 107 -~--~~~rg~a~~--~~~i~~~t~~---------------------------------~~l~alda~tG~~~W~~~~~~~ 148 (582)
T d1flga_ 107 -D--VVNRGAAIY--GDKVFFGTLD---------------------------------ASVVALNKNTGKVVWKKKFADH 148 (582)
T ss_dssp -C--SCCCCCEEE--TTEEEEEETT---------------------------------TEEEEEESSSCCEEEEEECSCG
T ss_pred -c--cccCCceEe--CCceEEecCC---------------------------------CeEEEecccccceeeeecccCC
Confidence 0 001123343 3678887764 8999999999999999987654
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE-------ccCcEEEEEeCCCCCeeeeeccCCCC
Q 040693 165 DVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV-------QKSGFAWALDRDSGSLIWSMEAGPGG 237 (382)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~-------~~~g~l~ald~~tG~~~W~~~~~~~~ 237 (382)
.. .....+.|.+..- +.....++.. ...+.++|+|++||+++|++...+..
T Consensus 149 ~~-------------------~~~~~~~p~~~~~---~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 206 (582)
T d1flga_ 149 GA-------------------GYTMTGAPTIVKD---GKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGH 206 (582)
T ss_dssp GG-------------------TCBCCSCCEEEEC---TTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTC
T ss_pred Cc-------------------cceeecCceEecC---CcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCc
Confidence 21 1123456776631 1112333332 23578999999999999998754310
Q ss_pred -----------------------------------CCCCcccce-ee--eCCeEEEEecCccccccccC-------CCCC
Q 040693 238 -----------------------------------LGGGAMWGA-AT--DERRIYTNIANSQHKNFNLK-------PSKN 272 (382)
Q Consensus 238 -----------------------------------~~g~~~~~~-~~--~~~~v~~~~~~~~~~~~~~~-------~~~~ 272 (382)
..+...|.. .. ..+++|+...+......... ....
T Consensus 207 ~~~~~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~d 286 (582)
T d1flga_ 207 MGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYD 286 (582)
T ss_dssp EEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCC
T ss_pred cccccccccccccccccccCCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCccc
Confidence 113344553 33 57899998876433222111 0111
Q ss_pred CCCCceEEEEECCCCcEEeeecCCCCCCC-----Cc--------------------------------------------
Q 040693 273 STIAGGWVAMDASNGNVLWSTADPSNGTA-----PG-------------------------------------------- 303 (382)
Q Consensus 273 ~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-----~~-------------------------------------------- 303 (382)
......++|+|++||+++|.+..-....+ ..
T Consensus 287 n~ys~SvvAld~~tG~~~W~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~ 366 (582)
T d1flga_ 287 SLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVD 366 (582)
T ss_dssp CTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSS
T ss_pred ccccceeEEecccchhhhhcccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccC
Confidence 23456688888888888887653210000 00
Q ss_pred -------------------------------------------------ceEEe--CCEEEEeeec--------------
Q 040693 304 -------------------------------------------------PVTVA--NGVLFGGSTY-------------- 318 (382)
Q Consensus 304 -------------------------------------------------~~~~~--~~~v~~~~~~-------------- 318 (382)
+..++ .+++|+....
T Consensus 367 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~ 446 (582)
T d1flga_ 367 NITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTK 446 (582)
T ss_dssp CCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCT
T ss_pred ccccccccccccccceeccccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccc
Confidence 00111 1234443220
Q ss_pred -----------------CCCcEEEEeCCCCcEeEEEecCCceecceE-EeCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 319 -----------------RQGPIYAMDVKTGKILWSYDTGATIYGGAS-VSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 319 -----------------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~-~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
..|.|+|||++|||++|+++.+.+.++.++ ..++.||+++.+|. ++|+|..|||+||.|
T Consensus 447 g~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~---l~A~Da~TGe~LW~~ 523 (582)
T d1flga_ 447 GSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGY---FKAFDAKSGKELWKF 523 (582)
T ss_dssp TSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSE---EEEEETTTCCEEEEE
T ss_pred cccccccCccccccccCCCCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCe---EEEEECCCCcEeEEE
Confidence 126799999999999999999888777664 46788999988876 799999999999999
Q ss_pred EC
Q 040693 381 CV 382 (382)
Q Consensus 381 ~~ 382 (382)
++
T Consensus 524 ~~ 525 (582)
T d1flga_ 524 QT 525 (582)
T ss_dssp EC
T ss_pred EC
Confidence 86
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=99.95 E-value=9.8e-26 Score=227.98 Aligned_cols=296 Identities=20% Similarity=0.306 Sum_probs=192.0
Q ss_pred CCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeC-ccCceeeeeeccCCCCCCCC-
Q 040693 5 SNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDA-KTGRILWQTFMLPDNFGKLN- 82 (382)
Q Consensus 5 ~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~-~tG~~lW~~~~~~~~~~~~~- 82 (382)
++-|+.|++.+++. ..++++|+++++.||+.+. ..+.|+|+|+ +|||++|+++..........
T Consensus 38 ~~L~~aW~~~~~~~--~~~~~tPiv~~g~ly~~t~-------------~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~ 102 (596)
T d1w6sa_ 38 KQLRPAWTFSTGLL--NGHEGAPLVVDGKMYIHTS-------------FPNNTFALGLDDPGTILWQDKPKQNPAARAVA 102 (596)
T ss_dssp GGEEEEEEEECSCC--SCCCSCCEEETTEEEEECS-------------TTTCEEEEETTCTTSEEEEECCCCCGGGGGGC
T ss_pred hhceEEEEEECCCC--CCceeCCEEECCEEEEeeC-------------CCCcEEEEeCCCCCCEEEEecCCCCccccccc
Confidence 35678899998653 3367899999999999764 2578999997 69999999986432211000
Q ss_pred ----CCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEE
Q 040693 83 ----EYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWY 158 (382)
Q Consensus 83 ----~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~ 158 (382)
...|...|. .-.....+||+++. ++.|+|||++||+++|+
T Consensus 103 ~~~~~~RGv~~~~---~~~~~~~~v~~~t~---------------------------------dg~l~Alda~tG~~~w~ 146 (596)
T d1w6sa_ 103 CCDLVNRGLAYWP---GDGKTPALILKTQL---------------------------------DGNVAALNAETGETVWK 146 (596)
T ss_dssp SSCSCCCCCEEEC---CCSSSCCEEEEECT---------------------------------TSEEEEEETTTCCEEEE
T ss_pred ccccccceeEEec---CCCCCceEEEEEeC---------------------------------CCCeEeeccccCceecc
Confidence 001111110 00011224666554 48999999999999999
Q ss_pred EecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc------CcEEEEEeCCCCCeeeeec
Q 040693 159 KQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK------SGFAWALDRDSGSLIWSME 232 (382)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~------~g~l~ald~~tG~~~W~~~ 232 (382)
++...... .+.+.++|+++ ++.|+++.. .|.|+|+|++||+++|++.
T Consensus 147 ~~~~d~~~-------------------~~~~t~~P~v~--------~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~ 199 (596)
T d1w6sa_ 147 VENSDIKV-------------------GSTLTIAPYVV--------KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAY 199 (596)
T ss_dssp EECCCGGG-------------------TCBCCSCCEEE--------TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred cccccccc-------------------ccccccCCcEE--------CCeEEEeeccccccccCceEEEECCCCcEEEEee
Confidence 98754321 23356889998 788888754 4899999999999999987
Q ss_pred cCCCC--------------------------------CCCCcccceee---eCCeEEEEecCccccccccCCCCCCCCCc
Q 040693 233 AGPGG--------------------------------LGGGAMWGAAT---DERRIYTNIANSQHKNFNLKPSKNSTIAG 277 (382)
Q Consensus 233 ~~~~~--------------------------------~~g~~~~~~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~g 277 (382)
..++. ..+...|.... ..+++|+...+........+++ ......
T Consensus 200 t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g-~n~ys~ 278 (596)
T d1w6sa_ 200 ATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPG-DNKWTM 278 (596)
T ss_dssp SSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCS-CCTTSS
T ss_pred ccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccc-cccccc
Confidence 53210 12333454433 4788999877754332222222 222345
Q ss_pred eEEEEECCCCcEEeeecCCCCCCC-----Cc-------------------------------------------------
Q 040693 278 GWVAMDASNGNVLWSTADPSNGTA-----PG------------------------------------------------- 303 (382)
Q Consensus 278 ~v~a~d~~tG~~~W~~~~~~~~~~-----~~------------------------------------------------- 303 (382)
.++|+|++|||++|.+.......+ ..
T Consensus 279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~~ 358 (596)
T d1w6sa_ 279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVF 358 (596)
T ss_dssp EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeecccccccccc
Confidence 677777777777775542110000 00
Q ss_pred --------------------------------------ceEEe--CCEEEEeeec-------------------------
Q 040693 304 --------------------------------------PVTVA--NGVLFGGSTY------------------------- 318 (382)
Q Consensus 304 --------------------------------------~~~~~--~~~v~~~~~~------------------------- 318 (382)
+..++ .+++|+....
T Consensus 359 ~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~ 438 (596)
T d1w6sa_ 359 KSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNM 438 (596)
T ss_dssp EEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred ccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccccc
Confidence 00111 1234443210
Q ss_pred ------------CCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 319 ------------RQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 319 ------------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
.-|.|.|+|+.|||++|+.+.+...++.+++ .+|.||+++.+|. |+|+|.+|||+||+|++
T Consensus 439 ~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~---l~A~Da~TGe~LW~~~~ 512 (596)
T d1w6sa_ 439 YPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGY---LKARDSDTGDLLWKFKI 512 (596)
T ss_dssp EECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSE---EEEEETTTCCEEEEEEC
T ss_pred ccCcccCcccCCCcceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCe---EEEEECCCCcEeeEEEC
Confidence 1257999999999999999988877777766 6788899988876 79999999999999985
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.23 E-value=4.2e-09 Score=93.53 Aligned_cols=265 Identities=13% Similarity=0.142 Sum_probs=166.8
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|++|||++-+.+++..+. .+..+| .+.++|++.. .++.|..+|.++++.+.+.......
T Consensus 17 ~D~~t~~~~~~i~~g~~p~-~va~sp--dG~~l~v~~~-------------~~~~i~v~d~~t~~~~~~~~~~~~~---- 76 (301)
T d1l0qa2 17 IDVTSNKVTATIPVGSNPM-GAVISP--DGTKVYVANA-------------HSNDVSIIDTATNNVIATVPAGSSP---- 76 (301)
T ss_dssp EETTTTEEEEEEECSSSEE-EEEECT--TSSEEEEEEG-------------GGTEEEEEETTTTEEEEEEECSSSE----
T ss_pred EECCCCeEEEEEECCCCce-EEEEeC--CCCEEEEEEC-------------CCCEEEEEECCCCceeeeeeccccc----
Confidence 6899999998888754321 122222 2345777654 2789999999999999887653211
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
....+.+++..+++.... +..+..+|..+++.+.....
T Consensus 77 ----------~~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~ 114 (301)
T d1l0qa2 77 ----------QGVAVSPDGKQVYVTNMA--------------------------------SSTLSVIDTTSNTVAGTVKT 114 (301)
T ss_dssp ----------EEEEECTTSSEEEEEETT--------------------------------TTEEEEEETTTTEEEEEEEC
T ss_pred ----------cccccccccccccccccc--------------------------------cceeeecccccceeeeeccc
Confidence 124566666677775543 37889999999999988866
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGG 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~ 241 (382)
... |....+..+| ...++....+..+..++..+++.......... .
T Consensus 115 ~~~----------------------------~~~~~~~~dg--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 160 (301)
T d1l0qa2 115 GKS----------------------------PLGLALSPDG--KKLYVTNNGDKTVSVINTVTKAVINTVSVGRS----P 160 (301)
T ss_dssp SSS----------------------------EEEEEECTTS--SEEEEEETTTTEEEEEETTTTEEEEEEECCSS----E
T ss_pred ccc----------------------------ceEEEeecCC--CeeeeeeccccceeeeeccccceeeecccCCC----c
Confidence 532 2222333334 34555666778899999999998888764321 0
Q ss_pred cccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeee-cCC
Q 040693 242 AMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGST-YRQ 320 (382)
Q Consensus 242 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~ 320 (382)
.......++..+++... ..+.+...+....+........... ....+..++..+|+... ...
T Consensus 161 ~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~v~~~~~~~ 223 (301)
T d1l0qa2 161 KGIAVTPDGTKVYVANF----------------DSMSISVIDTVTNSVIDTVKVEAAP-SGIAVNPEGTKAYVTNVDKYF 223 (301)
T ss_dssp EEEEECTTSSEEEEEET----------------TTTEEEEEETTTTEEEEEEECSSEE-EEEEECTTSSEEEEEEECSSC
T ss_pred eEEEeeccccceeeecc----------------cccccccccccceeeeecccccCCc-ceeecccccccccccccccee
Confidence 11111125666776632 2355777788888887777655421 11111123456766653 124
Q ss_pred CcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 321 GPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 321 g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
+.|+.+|..+++++.+++.+.... ..++ .+.+|||+.+....+.+ +|..+|+++-.+.|
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~~~~-~va~spdg~~l~va~~~~~~i~v--~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGPDPA-GIAVTPDGKKVYVALSFCNTVSV--IDTATNTITATMAV 284 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCSSEE-EEEECTTSSEEEEEETTTTEEEE--EETTTTEEEEEEEC
T ss_pred eeeeeeecCCCeEEEEEcCCCCEE-EEEEeCCCCEEEEEECCCCeEEE--EECCCCeEEEEEeC
Confidence 679999999999999988765432 3333 34568988775444444 57788998876653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.07 E-value=3.5e-08 Score=88.58 Aligned_cols=289 Identities=12% Similarity=0.075 Sum_probs=163.0
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEE-c-CEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYY-K-GAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFG 79 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~-~-~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~ 79 (382)
+|+++++++.+.++++..... ....+. + ..+|++.. .++.|+.+|.+||+++++.........
T Consensus 16 ~D~~s~~~~~~i~~~~~~~~~--~~i~~spDg~~l~v~~~-------------~~~~v~v~D~~t~~~~~~~~~~~~~~~ 80 (337)
T d1pbyb_ 16 IDTEKMAVDKVITIADAGPTP--MVPMVAPGGRIAYATVN-------------KSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EETTTTEEEEEEECTTCTTCC--CCEEECTTSSEEEEEET-------------TTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred EECCCCeEEEEEECCCCCCCc--cEEEECCCCCEEEEEEC-------------CCCeEEEEECCCCcEEEEEecCCCccc
Confidence 689999999998875432211 122332 3 45677543 278899999999999999887432210
Q ss_pred CCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEE
Q 040693 80 KLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYK 159 (382)
Q Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~ 159 (382)
+.. .....+.+++..+|++........ .........+..+|..+++.++..
T Consensus 81 ------~~~--~~~v~~s~dg~~l~~~~~~~~~~~---------------------~~~~~~~~~~~~~d~~~~~~~~~~ 131 (337)
T d1pbyb_ 81 ------VKS--LFGAALSPDGKTLAIYESPVRLEL---------------------THFEVQPTRVALYDAETLSRRKAF 131 (337)
T ss_dssp ------EEC--TTCEEECTTSSEEEEEEEEEEECS---------------------SCEEECCCEEEEEETTTTEEEEEE
T ss_pred ------ccc--eeeEEEcCCCcEEEEeecCCccee---------------------eeccccccceeeccccCCeEEEec
Confidence 111 123567788888888754310000 001112378899999999999998
Q ss_pred ecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC
Q 040693 160 QLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG 239 (382)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~ 239 (382)
...... .-..+..+ +..++++..+ ...+|..+++..+..........
T Consensus 132 ~~~~~~----------------------------~~~~~s~d---g~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~ 178 (337)
T d1pbyb_ 132 EAPRQI----------------------------TMLAWARD---GSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAE 178 (337)
T ss_dssp ECCSSC----------------------------CCEEECTT---SSCEEEESSS--EEEEETTTTEEEEEECSTTTTTT
T ss_pred cccCCc----------------------------eEEEEcCC---CCEEEEEcCC--cceeeeecCcEEEEeecCCcccc
Confidence 765331 11111222 3455565544 66789999999998876432111
Q ss_pred C------CcccceeeeCCeEE--EEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe-C-
Q 040693 240 G------GAMWGAATDERRIY--TNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-N- 309 (382)
Q Consensus 240 g------~~~~~~~~~~~~v~--~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~- 309 (382)
. ...+.........- ......+ ..........+.+..+|..+|+..-....+... ........ +
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 252 (337)
T d1pbyb_ 179 TYAQPDVLAVWNQHESSGVMATPFYTARKD-----IDPADPTAYRTGLLTMDLETGEMAMREVRIMDV-FYFSTAVNPAK 252 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTT-----SCTTSGGGEEEEEEEEETTTCCEEEEEEEECSS-CEEEEEECTTS
T ss_pred ceecCCcceeeccccccceeeeeeeeeeec-----cceeeecccCccEEEEEcCCCcEEEEEecCCCc-ceEEEEecccc
Confidence 0 00010000111111 1111100 001111123456889999999876554333211 11112222 2
Q ss_pred CEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 310 GVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 310 ~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
.+++. . ++.+..+|.++++.+.+.+.+.... +.++ .+.+||+++.++.+ .-+|..+++.+-.+.
T Consensus 253 ~~~~~-~---~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~s~dG~~l~v~~~~~~i---~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 253 TRAFG-A---YNVLESFDLEKNASIKRVPLPHSYY-SVNVSTDGSTVWLGGALGDL---AAYDAETLEKKGQVD 318 (337)
T ss_dssp SEEEE-E---ESEEEEEETTTTEEEEEEECSSCCC-EEEECTTSCEEEEESBSSEE---EEEETTTCCEEEEEE
T ss_pred eEEEE-c---cccEEEEECCCCcEEEEEcCCCCEE-EEEECCCCCEEEEEeCCCcE---EEEECCCCcEEEEEE
Confidence 34443 3 5889999999999999998876443 3343 46678888777662 346777788876654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.04 E-value=4.1e-08 Score=86.86 Aligned_cols=228 Identities=14% Similarity=0.136 Sum_probs=147.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|++||+++.+.++.... ...++++++.++|++...
T Consensus 11 ~~~v~v~D~~t~~~~~~i~~g~~p--------------~~va~spdG~~l~v~~~~------------------------ 52 (301)
T d1l0qa2 11 SDNISVIDVTSNKVTATIPVGSNP--------------MGAVISPDGTKVYVANAH------------------------ 52 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSSE--------------EEEEECTTSSEEEEEEGG------------------------
T ss_pred CCEEEEEECCCCeEEEEEECCCCc--------------eEEEEeCCCCEEEEEECC------------------------
Confidence 788999999999999998874221 125788888889886543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
++.|..+|..+++.+.+.+.... |.-..+..++ ...++....
T Consensus 53 --------~~~i~v~d~~t~~~~~~~~~~~~----------------------------~~~~~~~~~~--~~~~~~~~~ 94 (301)
T d1l0qa2 53 --------SNDVSIIDTATNNVIATVPAGSS----------------------------PQGVAVSPDG--KQVYVTNMA 94 (301)
T ss_dssp --------GTEEEEEETTTTEEEEEEECSSS----------------------------EEEEEECTTS--SEEEEEETT
T ss_pred --------CCEEEEEECCCCceeeeeecccc----------------------------cccccccccc--ccccccccc
Confidence 37899999999999988765432 2222222233 345556666
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
+..+..+|..+++.......... ........++..+++.. ..+..+..++..+++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dg~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~ 154 (301)
T d1l0qa2 95 SSTLSVIDTTSNTVAGTVKTGKS----PLGLALSPDGKKLYVTN----------------NGDKTVSVINTVTKAVINTV 154 (301)
T ss_dssp TTEEEEEETTTTEEEEEEECSSS----EEEEEECTTSSEEEEEE----------------TTTTEEEEEETTTTEEEEEE
T ss_pred cceeeecccccceeeeecccccc----ceEEEeecCCCeeeeee----------------ccccceeeeeccccceeeec
Confidence 77899999999998888775321 01111111556666553 23467889999999999887
Q ss_pred cCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceE-EeCCEEEEEeCceeEeecCCcc
Q 040693 294 ADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS-VSNGCIYMGNGYKVTVGFGNKN 370 (382)
Q Consensus 294 ~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~-~~~g~lyv~~~~g~~~~~~~~~ 370 (382)
..... ...+.. ++..++++.. ..+.+...+....++......+....+... ..+..+|++..++....++.+|
T Consensus 155 ~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D 230 (301)
T d1l0qa2 155 SVGRS---PKGIAVTPDGTKVYVANF-DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMID 230 (301)
T ss_dssp ECCSS---EEEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEE
T ss_pred ccCCC---ceEEEeeccccceeeecc-cccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeee
Confidence 76432 112222 3457777764 456677778888888887776654332222 2567777776544333345567
Q ss_pred CCCCCeEEEEE
Q 040693 371 FTSGTSLYAFC 381 (382)
Q Consensus 371 ~~~g~~l~~~~ 381 (382)
..+++.+..+.
T Consensus 231 ~~t~~~~~~~~ 241 (301)
T d1l0qa2 231 TGTNKITARIP 241 (301)
T ss_dssp TTTTEEEEEEE
T ss_pred cCCCeEEEEEc
Confidence 77788776653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.93 E-value=6.2e-08 Score=87.23 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=60.4
Q ss_pred ceEEEEECCCCcEEeeecCCCCCCCCcceEE-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCE
Q 040693 277 GGWVAMDASNGNVLWSTADPSNGTAPGPVTV-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGC 353 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~ 353 (382)
..+..+|.++++.......+........... .+..+.... .+.+..+|.++++.+.+.+.+.... +.++ .+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~v~d~~~~~~~~~~~~~~~~~-~va~s~DG~~ 305 (346)
T d1jmxb_ 230 YGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLAKYDLKQRKLIKAANLDHTYY-CVAFDKKGDK 305 (346)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEEEEETTTTEEEEEEECSSCCC-EEEECSSSSC
T ss_pred ceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec---CCeEEEEECCCCcEEEEEcCCCCEE-EEEEcCCCCE
Confidence 3466677777776665443321111111111 233344333 5789999999999999998876433 2333 5678
Q ss_pred EEEEeCceeEeecCCccCCCCCeEEEEEC
Q 040693 354 IYMGNGYKVTVGFGNKNFTSGTSLYAFCV 382 (382)
Q Consensus 354 lyv~~~~g~~~~~~~~~~~~g~~l~~~~~ 382 (382)
||+++.+|. + .-+|..|++.+....+
T Consensus 306 l~v~~~d~~-v--~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 306 LYLGGTFND-L--AVFNPDTLEKVKNIKL 331 (346)
T ss_dssp EEEESBSSE-E--EEEETTTTEEEEEEEC
T ss_pred EEEEeCCCc-E--EEEECccCCEEEEEEC
Confidence 888877665 3 3367788998877653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.85 E-value=1.6e-06 Score=79.23 Aligned_cols=287 Identities=11% Similarity=-0.017 Sum_probs=145.9
Q ss_pred ceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEE
Q 040693 26 SGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYI 105 (382)
Q Consensus 26 ~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v 105 (382)
+|.-.+.++|+....... ..+.|+.+|.+||+++.+.+.... ..+++.+++.++|+
T Consensus 27 a~spdg~~~~~~~~~~~~---------~~~~v~v~D~~tg~~~~~~~~~~~---------------~~~a~SpDG~~l~v 82 (373)
T d2madh_ 27 APGADGRRSYINLPAHHS---------AIIQQWVLDAGSGSILGHVNGGFL---------------PNPVAAHSGSEFAL 82 (373)
T ss_pred ccCCCCCEEEEEcccccC---------CCceEEEEECCCCCEEEEEeCCCC---------------ccEEEcCCCCEEEE
Confidence 344556778876532211 156899999999999998765311 13678888889988
Q ss_pred EcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccC---CCCC----
Q 040693 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWY---LNPN---- 178 (382)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~---~~~~---- 178 (382)
..... .+......++.|..+|+.||++++.........+....... ..|.
T Consensus 83 a~~~~-----------------------~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~ 139 (373)
T d2madh_ 83 ASTSF-----------------------SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADL 139 (373)
T ss_pred EeecC-----------------------CcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcE
Confidence 76431 11111223578999999999999887655432111100000 0000
Q ss_pred ------------CCCCCC-CCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccc
Q 040693 179 ------------CPPGPS-PDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWG 245 (382)
Q Consensus 179 ------------~~~~~~-~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~ 245 (382)
...... ........|.-..+..+| ...++....++.+..+|..++++.+................
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g--~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (373)
T d2madh_ 140 LFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGA--PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ 217 (373)
T ss_pred EEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCC--CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee
Confidence 000000 000001112222223333 34556677788899999999988887764321111111111
Q ss_pred -eeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCC----------CCCCCcceE--EeCCEE
Q 040693 246 -AATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPS----------NGTAPGPVT--VANGVL 312 (382)
Q Consensus 246 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~----------~~~~~~~~~--~~~~~v 312 (382)
...+.+..++.. ...+.+..++..+++..-...... .......+. .++..+
T Consensus 218 ~~~~~~~~~~~~~----------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 281 (373)
T d2madh_ 218 PAQANKSGRIVWP----------------VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred eEEECCCceEEEe----------------cCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeE
Confidence 111222222211 123445555555554322211110 000000111 122333
Q ss_pred EEeee--------cCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCE--EEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 313 FGGST--------YRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGC--IYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 313 ~~~~~--------~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~--lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
|.... ...+.+..+|..+|+.+++.+.+.... .+.+ .||+ ||++.+....+ +-+|..+|+.+-+.
T Consensus 282 ~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~-~~a~spDG~~~l~vt~~~d~~v--~v~D~~tg~~~~~~ 357 (373)
T d2madh_ 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVD-AISVAQDGGPDLYALSAGTEVL--HIYDAGAGDQDQST 357 (373)
T ss_pred EEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCee-EEEECCCCCEEEEEEeCCCCeE--EEEECCCCCEEEEE
Confidence 33211 135678999999999999998766543 3333 3554 56665544443 44688889998765
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.73 E-value=3.6e-06 Score=75.84 Aligned_cols=214 Identities=11% Similarity=-0.002 Sum_probs=130.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.+.+..+..-. + .+ ....+.+++..++++..+
T Consensus 79 dg~i~iwd~~~~~~~~~~~~~~~~--------~-~v--~~v~~s~d~~~l~~~~~~------------------------ 123 (311)
T d1nr0a1 79 HGNVRIWDTTQTTHILKTTIPVFS--------G-PV--KDISWDSESKRIAAVGEG------------------------ 123 (311)
T ss_dssp TSEEEEEESSSTTCCEEEEEECSS--------S-CE--EEEEECTTSCEEEEEECC------------------------
T ss_pred CceEeeeeeecccccccccccccc--------C-cc--cccccccccccccccccc------------------------
Confidence 889999999988877665542110 0 11 124556666666655432
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
.+..+..+|.++++.+.+.......+ .-..+..++ ...++++..
T Consensus 124 -------~~~~~~v~~~~~~~~~~~l~~h~~~v---------------------------~~v~~~~~~--~~~l~sgs~ 167 (311)
T d1nr0a1 124 -------RERFGHVFLFDTGTSNGNLTGQARAM---------------------------NSVDFKPSR--PFRIISGSD 167 (311)
T ss_dssp -------SSCSEEEEETTTCCBCBCCCCCSSCE---------------------------EEEEECSSS--SCEEEEEET
T ss_pred -------cccccccccccccccccccccccccc---------------------------ccccccccc--eeeeccccc
Confidence 12446677888888776543221110 111122233 345777888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
|+.+..+|..+++.......... ....... ++..++.+ ..++.+..+|.++++...
T Consensus 168 d~~i~i~d~~~~~~~~~~~~~~~-----~i~~v~~~p~~~~l~~~-----------------~~d~~v~~~d~~~~~~~~ 225 (311)
T d1nr0a1 168 DNTVAIFEGPPFKFKSTFGEHTK-----FVHSVRYNPDGSLFAST-----------------GGDGTIVLYNGVDGTKTG 225 (311)
T ss_dssp TSCEEEEETTTBEEEEEECCCSS-----CEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTCCEEE
T ss_pred ccccccccccccccccccccccc-----cccccccCccccccccc-----------------cccccccccccccccccc
Confidence 99999999999998887764321 2222222 45555554 345889999999999988
Q ss_pred eecCCCCCCC--C---cceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee---cceEEeCCEEEEEeCce
Q 040693 292 STADPSNGTA--P---GPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY---GGASVSNGCIYMGNGYK 361 (382)
Q Consensus 292 ~~~~~~~~~~--~---~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~---~~p~~~~g~lyv~~~~g 361 (382)
+.+....... . ..+.+ ++.+++.++ .++.|+.+|.++++++..++...... .+....++.|+.++.+|
T Consensus 226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs--~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG 303 (311)
T d1nr0a1 226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS--ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303 (311)
T ss_dssp ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE--TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTC
T ss_pred cccccccccccccccccccccCCCCCEEEEEe--CCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCC
Confidence 8765432111 1 12233 245666666 48999999999999998887665432 22334678888888887
Q ss_pred e
Q 040693 362 V 362 (382)
Q Consensus 362 ~ 362 (382)
.
T Consensus 304 ~ 304 (311)
T d1nr0a1 304 F 304 (311)
T ss_dssp C
T ss_pred E
Confidence 6
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=98.71 E-value=8.9e-07 Score=79.31 Aligned_cols=284 Identities=11% Similarity=0.003 Sum_probs=145.3
Q ss_pred CcCCCCceeeeeecCcCc-cceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHA-RSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGK 80 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~-~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~ 80 (382)
+|++|+|++.+.+++... +..+..+| .+..+|++.. .++.|+.+|.++|+++.+.........
T Consensus 23 ~D~~t~~~~~t~~~~~~~~p~~l~~sp--DG~~l~v~~~-------------~~~~v~~~d~~t~~~~~~~~~~~~~~~- 86 (346)
T d1jmxb_ 23 VDVASDTVYKSCVMPDKFGPGTAMMAP--DNRTAYVLNN-------------HYGDIYGIDLDTCKNTFHANLSSVPGE- 86 (346)
T ss_dssp EETTTTEEEEEEECSSCCSSCEEEECT--TSSEEEEEET-------------TTTEEEEEETTTTEEEEEEESCCSTTE-
T ss_pred EECCCCCEEEEEEcCCCCCcceEEECC--CCCEEEEEEC-------------CCCcEEEEeCccCeeeeeecccccccc-
Confidence 699999999988875321 11222222 2345677654 278899999999999999876432210
Q ss_pred CCCCcCccccCCCceeeCCCCeEEEEcCCCCCC------Ccc------hhhcccc----------cCCCCCCCCCCCCCC
Q 040693 81 LNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSV------PLH------IRQCQEE----------NNQTTPTSPDKCIEP 138 (382)
Q Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~------~~~------~~~~~~~----------~~~~~~~~~~~~~~~ 138 (382)
....-....+.+++..+|+........ .+. ....... .........++++..
T Consensus 87 ------~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T d1jmxb_ 87 ------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV 160 (346)
T ss_dssp ------EEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred ------cCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence 000012356777888888875321000 000 0000000 000000111222221
Q ss_pred CCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEe--e-eCceeecEEEEEccCc
Q 040693 139 ENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSM--Y-RNKVKHDIVVAVQKSG 215 (382)
Q Consensus 139 ~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~-~~g~~~~~v~~~~~~g 215 (382)
....+..+|..+++.+...+....... . ...|. +............+... . ........+.......
T Consensus 161 --~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (346)
T d1jmxb_ 161 --AGPDIYKMDVKTGKYTVALPLRNWNRK---G--YSAPD---VLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLY 230 (346)
T ss_dssp --ESSSEEEECTTTCCEEEEECSTTCCCT---T--BCCCB---CCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEE
T ss_pred --eCCcceEEEccCCCEEEEEecCCCccc---e--EEecc---ccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCc
Confidence 124566778888888887765432100 0 00010 00000000011111100 0 0000011112223345
Q ss_pred EEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 216 FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 216 ~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
.+..+|..+++.......+.. ...+.... ++..+... ..+.+..+|.++++.+++.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~------------------~~~~v~v~d~~~~~~~~~~ 288 (346)
T d1jmxb_ 231 GYLSVDLKTGKTHTQEFADLT----ELYFTGLRSPKDPNQIYG------------------VLNRLAKYDLKQRKLIKAA 288 (346)
T ss_dssp EEEEEETTTCCEEEEEEEECS----SCEEEEEECSSCTTEEEE------------------EESEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCceEEEEeeccc----ceeEEEEEeCCCCEEEEe------------------cCCeEEEEECCCCcEEEEE
Confidence 688889888887766543211 01111111 33333332 2356999999999999999
Q ss_pred cCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc
Q 040693 294 ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
+.... ...-.+.-++.++|++.. ++.|..+|.+++|.+.+.+++++
T Consensus 289 ~~~~~-~~~va~s~DG~~l~v~~~--d~~v~v~D~~t~~~i~~i~~p~g 334 (346)
T d1jmxb_ 289 NLDHT-YYCVAFDKKGDKLYLGGT--FNDLAVFNPDTLEKVKNIKLPGG 334 (346)
T ss_dssp ECSSC-CCEEEECSSSSCEEEESB--SSEEEEEETTTTEEEEEEECSSS
T ss_pred cCCCC-EEEEEEcCCCCEEEEEeC--CCcEEEEECccCCEEEEEECCCC
Confidence 87652 222222225678888875 89999999999999999999874
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.69 E-value=2.8e-06 Score=75.57 Aligned_cols=254 Identities=13% Similarity=0.081 Sum_probs=140.1
Q ss_pred CcCCCCceeeeeecCcCccceeee-ceEE--EcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITM-SGTY--YKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNF 78 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~-~p~v--~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~ 78 (382)
+|.+|||++++............. ...+ .+..+|++......... ..+..+..+..+|..++++++........
T Consensus 61 ~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~~- 137 (337)
T d1pbyb_ 61 IDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELT--HFEVQPTRVALYDAETLSRRKAFEAPRQI- 137 (337)
T ss_dssp EETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSS--CEEECCCEEEEEETTTTEEEEEEECCSSC-
T ss_pred EECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceee--eccccccceeeccccCCeEEEeccccCCc-
Confidence 688899999988765422111111 1111 13456665432111111 11112568899999999999998763221
Q ss_pred CCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEE
Q 040693 79 GKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWY 158 (382)
Q Consensus 79 ~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~ 158 (382)
....+++++..+|++. +.+..+|..+++..++
T Consensus 138 -------------~~~~~s~dg~~l~~~~-----------------------------------~~~~~~d~~~~~~~~~ 169 (337)
T d1pbyb_ 138 -------------TMLAWARDGSKLYGLG-----------------------------------RDLHVMDPEAGTLVED 169 (337)
T ss_dssp -------------CCEEECTTSSCEEEES-----------------------------------SSEEEEETTTTEEEEE
T ss_pred -------------eEEEEcCCCCEEEEEc-----------------------------------CCcceeeeecCcEEEE
Confidence 2356777888888864 3466789999999998
Q ss_pred EecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEE-eeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCC
Q 040693 159 KQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLS-MYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG 237 (382)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~ 237 (382)
........- . ...|... .............. ..........+.....++.+..+|..+|+..-....+.
T Consensus 170 ~~~~~~~~~-~----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 239 (337)
T d1pbyb_ 170 KPIQSWEAE-T----YAQPDVL---AVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-- 239 (337)
T ss_dssp ECSTTTTTT-T----BCCCBCC---CCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC--
T ss_pred eecCCcccc-c----eecCCcc---eeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC--
Confidence 876543210 0 0011000 00000001111100 00000000000111224568888888887655433221
Q ss_pred CCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEE
Q 040693 238 LGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLF 313 (382)
Q Consensus 238 ~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~ 313 (382)
+...+.... ++..++.. .+.+..+|+++++.+++...+.. ...+.+ ++.++|
T Consensus 240 --~~~~~~~~~~~~~~~~~~~-------------------~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~s~dG~~l~ 295 (337)
T d1pbyb_ 240 --DVFYFSTAVNPAKTRAFGA-------------------YNVLESFDLEKNASIKRVPLPHS---YYSVNVSTDGSTVW 295 (337)
T ss_dssp --SSCEEEEEECTTSSEEEEE-------------------ESEEEEEETTTTEEEEEEECSSC---CCEEEECTTSCEEE
T ss_pred --CcceEEEEecccceEEEEc-------------------cccEEEEECCCCcEEEEEcCCCC---EEEEEECCCCCEEE
Confidence 111111112 34445443 36799999999999999987652 223334 456888
Q ss_pred EeeecCCCcEEEEeCCCCcEeEEEecCCc
Q 040693 314 GGSTYRQGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 314 ~~~~~~~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
++.. ++.|..+|.+++|.+-++++++.
T Consensus 296 v~~~--~~~i~v~D~~t~~~v~~i~~~g~ 322 (337)
T d1pbyb_ 296 LGGA--LGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EESB--SSEEEEEETTTCCEEEEEECGGG
T ss_pred EEeC--CCcEEEEECCCCcEEEEEECCCC
Confidence 8874 89999999999999999988653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=9.7e-06 Score=72.04 Aligned_cols=144 Identities=13% Similarity=0.162 Sum_probs=96.7
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..++.+..++.+..+|..+++.+........ ....... .+..++.. ..++.+..+
T Consensus 171 ~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-----------------~~d~~i~i~ 228 (355)
T d1nexb2 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD-----RIYSTIYDHERKRCISA-----------------SMDTTIRIW 228 (355)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEEETTTTEEEEE-----------------ETTSCEEEE
T ss_pred cceeeeecccceeeeeecccccceeeeecccc-----ccccccccccceeeecc-----------------cccceEEee
Confidence 46778888899999999999998877664321 1111111 45556555 345789999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCcee
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~ 362 (382)
|.++++.+......... ...+...++.++.++ .+|.|...|..+++...+..............+++++++.++|.
T Consensus 229 d~~~~~~~~~~~~h~~~--v~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~d~~ 304 (355)
T d1nexb2 229 DLENGELMYTLQGHTAL--VGLLRLSDKFLVSAA--ADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQ 304 (355)
T ss_dssp ETTTCCEEEEECCCSSC--CCEEEECSSEEEEEC--TTSEEEEEETTTCCEEEEEECTTCCCCCEEEECSSEEEEEETTE
T ss_pred ecccccccccccccccc--ccccccccceeeeee--cccccccccccccceecccccCCceEEEEEcCCCCEEEEEeCCE
Confidence 99999999988765432 234455677777777 48999999999998887776544332333446777777777654
Q ss_pred EeecCCccCCCCCeE
Q 040693 363 TVGFGNKNFTSGTSL 377 (382)
Q Consensus 363 ~~~~~~~~~~~g~~l 377 (382)
+.+|. .++|+.+
T Consensus 305 -i~vwd--~~tg~~~ 316 (355)
T d1nexb2 305 -FNIYN--LRSGKLV 316 (355)
T ss_dssp -EEEEE--TTTCCBC
T ss_pred -EEEEE--CCCCCEE
Confidence 55554 4456554
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.64 E-value=5.1e-06 Score=75.00 Aligned_cols=282 Identities=13% Similarity=0.056 Sum_probs=149.5
Q ss_pred ceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEE
Q 040693 26 SGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYI 105 (382)
Q Consensus 26 ~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v 105 (382)
+|...+.++|+....... ....|+.+|+++|+++++.+.+.. ..+.+.+++.++|+
T Consensus 8 a~spdg~~~~v~~~~~~~---------~~~~v~v~D~~tg~~~~~~~~g~~---------------~~~a~SpDg~~l~v 63 (355)
T d2bbkh_ 8 APAPDARRVYVNDPAHFA---------AVTQQFVIDGEAGRVIGMIDGGFL---------------PNPVVADDGSFIAH 63 (355)
T ss_dssp CCCCCTTEEEEEECGGGC---------SSEEEEEEETTTTEEEEEEEECSS---------------CEEEECTTSSCEEE
T ss_pred eeCCCCCEEEEEecccCC---------CcCeEEEEECCCCcEEEEEECCCC---------------CceEEcCCCCEEEE
Confidence 455567788886532211 156799999999999999876311 13678888888988
Q ss_pred EcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCC
Q 040693 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSP 185 (382)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (382)
...... +......++.|..+|..+|+.+.+.........
T Consensus 64 ~~~~~~-----------------------~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~------------------ 102 (355)
T d2bbkh_ 64 ASTVFS-----------------------RIARGERTDYVEVFDPVTLLPTADIELPDAPRF------------------ 102 (355)
T ss_dssp EEEEEE-----------------------ETTEEEEEEEEEEECTTTCCEEEEEEETTCCCC------------------
T ss_pred EeCCCc-----------------------cccccCCCCEEEEEECCCCCEEEEEecCCccee------------------
Confidence 653200 000011137899999999999999877644211
Q ss_pred CCCCCCCceEEEeeeCceeecEEEEE--ccCcEEEEEeCCCCCeeeeeccCCCCC---CCCcc-cceeeeCCeEEEEecC
Q 040693 186 DADFGEAPMMLSMYRNKVKHDIVVAV--QKSGFAWALDRDSGSLIWSMEAGPGGL---GGGAM-WGAATDERRIYTNIAN 259 (382)
Q Consensus 186 ~~~~~~~p~~~~~~~~g~~~~~v~~~--~~~g~l~ald~~tG~~~W~~~~~~~~~---~g~~~-~~~~~~~~~v~~~~~~ 259 (382)
.....|....+..+| ..+++. +.+..+..+|..+++.+-..+...... .+... .....++..+++....
T Consensus 103 --~~~~~~~~~~~s~dg---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~ 177 (355)
T d2bbkh_ 103 --LVGTYPWMTSLTPDG---KTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGT 177 (355)
T ss_dssp --CBSCCGGGEEECTTS---SEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred --ecCCCCceEEEecCC---CeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecC
Confidence 122334333334444 233333 345678888888888887766432100 00000 0111133444443222
Q ss_pred cccccc-----------------cc-CCCC---CCCCCceEEEEECCCCcEEeee-cC-CC--------CCCCCcceEE-
Q 040693 260 SQHKNF-----------------NL-KPSK---NSTIAGGWVAMDASNGNVLWST-AD-PS--------NGTAPGPVTV- 307 (382)
Q Consensus 260 ~~~~~~-----------------~~-~~~~---~~~~~g~v~a~d~~tG~~~W~~-~~-~~--------~~~~~~~~~~- 307 (382)
...... .. .+.. -....+.++.++..+++..-.. .. .. .......+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 257 (355)
T d2bbkh_ 178 EGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH 257 (355)
T ss_dssp SSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE
T ss_pred CCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEe
Confidence 110000 00 0000 0123466777777776542111 10 00 0000112222
Q ss_pred -eCCEEEEeeec--------CCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCE--EEEEeCceeEeecCCccCCCCC
Q 040693 308 -ANGVLFGGSTY--------RQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGC--IYMGNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 308 -~~~~v~~~~~~--------~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~--lyv~~~~g~~~~~~~~~~~~g~ 375 (382)
++..+|+.... ....|..+|..+++++.+.+.+... ....+ .||+ ||++...... ++-+|.++|+
T Consensus 258 ~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~-~~~a~spDG~~~l~v~~~~d~~--i~v~D~~tg~ 334 (355)
T d2bbkh_ 258 RALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEI-DSINVSQDEKPLLYALSTGDKT--LYIHDAESGE 334 (355)
T ss_dssp TTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEE-CEEEECCSSSCEEEEEETTTTE--EEEEETTTCC
T ss_pred CCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCE-EEEEEcCCCCeEEEEEECCCCE--EEEEECCCCC
Confidence 34567766431 1236899999999999988765433 23333 3554 6666553332 3557888999
Q ss_pred eEEEE
Q 040693 376 SLYAF 380 (382)
Q Consensus 376 ~l~~~ 380 (382)
++-++
T Consensus 335 ~~~~i 339 (355)
T d2bbkh_ 335 ELRSV 339 (355)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98765
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=3.9e-05 Score=67.92 Aligned_cols=239 Identities=7% Similarity=0.023 Sum_probs=138.0
Q ss_pred EEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcC
Q 040693 29 YYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATG 108 (382)
Q Consensus 29 v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~ 108 (382)
..++.|+.+.. ++.|..+|..+|+++.++.-... .+ ....+.++ +.++.+..
T Consensus 21 ~~~~~l~tgs~--------------Dg~i~vWd~~~~~~~~~l~~H~~-----------~V--~~l~~s~~-~~l~s~s~ 72 (355)
T d1nexb2 21 FEDNYVITGAD--------------DKMIRVYDSINKKFLLQLSGHDG-----------GV--WALKYAHG-GILVSGST 72 (355)
T ss_dssp EETTEEEEEET--------------TTEEEEEETTTTEEEEEEECCSS-----------CE--EEEEEETT-TEEEEEET
T ss_pred ECCCEEEEEeC--------------CCeEEEEECCCCcEEEEEECCCC-----------CE--EEEEEcCC-CEEEEEec
Confidence 34666666664 89999999999999988763111 11 12334433 45554443
Q ss_pred CCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCC
Q 040693 109 NLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDAD 188 (382)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (382)
++.|...+..+++............
T Consensus 73 ---------------------------------D~~i~iw~~~~~~~~~~~~~~~~~~---------------------- 97 (355)
T d1nexb2 73 ---------------------------------DRTVRVWDIKKGCCTHVFEGHNSTV---------------------- 97 (355)
T ss_dssp ---------------------------------TCCEEEEETTTTEEEEEECCCSSCE----------------------
T ss_pred ---------------------------------ccccccccccccccccccccccccc----------------------
Confidence 3889999999888888776554311
Q ss_pred CCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCC--------CCC----------CcccceeeeC
Q 040693 189 FGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG--------LGG----------GAMWGAATDE 250 (382)
Q Consensus 189 ~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~--------~~g----------~~~~~~~~~~ 250 (382)
........ .....++.+..++.+..+|..+++........... ... ........++
T Consensus 98 ----~~~~~~~~--~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (355)
T d1nexb2 98 ----RCLDIVEY--KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171 (355)
T ss_dssp ----EEEEEEEE--TTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEET
T ss_pred ----cccccccc--cccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccc
Confidence 11110011 11456777888999999998887655433221100 000 0000011134
Q ss_pred CeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeC
Q 040693 251 RRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDV 328 (382)
Q Consensus 251 ~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~ 328 (382)
..++.. ..++.+..+|.++++.+......... ...... .+..++.++ .++.+..+|.
T Consensus 172 ~~~~~~-----------------~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~d~~i~i~d~ 230 (355)
T d1nexb2 172 NIVVSG-----------------SYDNTLIVWDVAQMKCLYILSGHTDR--IYSTIYDHERKRCISAS--MDTTIRIWDL 230 (355)
T ss_dssp TEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCSSC--EEEEEEETTTTEEEEEE--TTSCEEEEET
T ss_pred ceeeee-----------------cccceeeeeecccccceeeeeccccc--cccccccccceeeeccc--ccceEEeeec
Confidence 444443 34577999999999998877654321 112222 345777776 4899999999
Q ss_pred CCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 329 KTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 329 ~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.+++.+..++............++.|+.++.+|. +.+| |..+++.+..+
T Consensus 231 ~~~~~~~~~~~h~~~v~~~~~~~~~l~~~~~dg~-i~iw--d~~~~~~~~~~ 279 (355)
T d1nexb2 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGS-IRGW--DANDYSRKFSY 279 (355)
T ss_dssp TTCCEEEEECCCSSCCCEEEECSSEEEEECTTSE-EEEE--ETTTCCEEEEE
T ss_pred cccccccccccccccccccccccceeeeeecccc-cccc--cccccceeccc
Confidence 9999999887554444455556677777777765 4455 44456655543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.60 E-value=1.6e-05 Score=72.20 Aligned_cols=290 Identities=11% Similarity=-0.040 Sum_probs=139.1
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|.+|||++.+.+.+..+ .+..+| .+.++|++........ .-..++.|..+|..|+++++...........
T Consensus 52 ~D~~tg~~~~~~~~~~~~--~~a~Sp--DG~~l~va~~~~~~~~----~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~- 122 (373)
T d2madh_ 52 LDAGSGSILGHVNGGFLP--NPVAAH--SGSEFALASTSFSRIA----KGKRTDYVEVFDPVTFLPIADIELPDAPRFD- 122 (373)
T ss_pred EECCCCCEEEEEeCCCCc--cEEEcC--CCCEEEEEeecCCccc----ccccceEEEEEECCCCcEEEEEecCCcceeE-
Confidence 688899999887654322 122233 3456666543211100 0002578999999999999998763221100
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhccc--ccCCCCC----CCCCCC--CCCCCCcceEEEEECCCC
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQE--ENNQTTP----TSPDKC--IEPENHSNSLLALDLDTG 153 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~--~~~~~~~g~v~ald~~tG 153 (382)
.+... ....+.+++..+++...+.-.....+..-.. ......| ...++. ...+..++.+..+|..++
T Consensus 123 ---~~~~~--~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~ 197 (373)
T d2madh_ 123 ---VGPYS--WMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGG 197 (373)
T ss_pred ---eccCC--CcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCc
Confidence 00000 1234555556555544221000000000000 0000000 011111 122444677788888888
Q ss_pred cEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeecc
Q 040693 154 KIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEA 233 (382)
Q Consensus 154 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~ 233 (382)
+..+......... ...+........+ +..++....++.++.++..+++..-....
T Consensus 198 ~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 252 (373)
T d2madh_ 198 AAGAGLVGAMLTA-----------------------AQNLLTQPAQANK--SGRIVWPVYSGKILQADISAAGATNKAPI 252 (373)
T ss_pred eeeEEEeeecccc-----------------------CccceeeeEEECC--CceEEEecCCceEEEEEcCCCeEEEEEee
Confidence 8887765432210 0111111111111 33444555667777777776654322221
Q ss_pred CCCC--------CCCC-cccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcc
Q 040693 234 GPGG--------LGGG-AMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGP 304 (382)
Q Consensus 234 ~~~~--------~~g~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~ 304 (382)
.... ..+. .......++..+|....... .+. .....+.+..+|..+|+.+++.+.... ...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~-----~~~~~~~v~~~d~~t~~~~~~~~~~~~---~~~ 322 (373)
T d2madh_ 253 DALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQS--AWK-----LHAAAKEVTSVTGLVGQTSSQISLGHD---VDA 322 (373)
T ss_pred ccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCc--eEE-----eecCCCeEEEEECCCCcEEEEecCCCC---eeE
Confidence 1000 0000 00111113444444322110 000 013357799999999999999887653 222
Q ss_pred eEE--eCCE-EEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 305 VTV--ANGV-LFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 305 ~~~--~~~~-v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
+.+ ++.. +|+... .++.|+.+|.+|||++.+++..+
T Consensus 323 ~a~spDG~~~l~vt~~-~d~~v~v~D~~tg~~~~~~~~~g 361 (373)
T d2madh_ 323 ISVAQDGGPDLYALSA-GTEVLHIYDAGAGDQDQSTVELG 361 (373)
T ss_pred EEECCCCCEEEEEEeC-CCCeEEEEECCCCCEEEEECCCC
Confidence 333 3444 454432 57899999999999999987544
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.60 E-value=5.5e-06 Score=76.04 Aligned_cols=284 Identities=9% Similarity=-0.073 Sum_probs=151.7
Q ss_pred ceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEE
Q 040693 26 SGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYI 105 (382)
Q Consensus 26 ~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v 105 (382)
+|.....+.|+....... ....|+.+|.++|+++=+...... ..+.+.+++..+|+
T Consensus 26 a~~~~~~~~~v~~~~~~~---------g~~~~~~~d~~~~~~~~~~~~~~~---------------~~~a~spDg~~i~~ 81 (368)
T d1mdah_ 26 GPGAISRRSHITLPAYFA---------GTTENWVSCAGCGVTLGHSLGAFL---------------SLAVAGHSGSDFAL 81 (368)
T ss_dssp CCCCCTTEEEEEECTTTC---------SSEEEEEEETTTTEEEEEEEECTT---------------CEEEECTTSSCEEE
T ss_pred ccCCCCcceeEEeeccCC---------CcceEEEEeCCCCcEEEEEeCCCC---------------CcceECCCCCEEEE
Confidence 455555666665432111 145799999999999888765211 13567788888888
Q ss_pred EcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCC
Q 040693 106 ATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSP 185 (382)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (382)
..... .++.-+..++.|..+|+.|++++++...+.....
T Consensus 82 ~~~~~-----------------------~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~------------------ 120 (368)
T d1mdah_ 82 ASTSF-----------------------ARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF------------------ 120 (368)
T ss_dssp EEEEE-----------------------TTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC------------------
T ss_pred EcccC-----------------------ccccccccCCeEEEEECCCCcEeeeecCCcccee------------------
Confidence 65310 0112233457899999999999999987654211
Q ss_pred CCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCC---CCCccccee-eeCCeEEEEecCcc
Q 040693 186 DADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGL---GGGAMWGAA-TDERRIYTNIANSQ 261 (382)
Q Consensus 186 ~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~g~~~~~~~-~~~~~v~~~~~~~~ 261 (382)
.....|.-..+..+| ..+++....++.+..+|.++++.....+.+.... .+...+... -++.++++......
T Consensus 121 --~~g~~p~~~a~SpDG--k~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~ 196 (368)
T d1mdah_ 121 --SVGPRVHIIGNCASS--ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAP 196 (368)
T ss_dssp --CBSCCTTSEEECTTS--SCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSC
T ss_pred --cccCCccceEECCCC--CEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCc
Confidence 011222223334455 3444444567899999999999998877542110 000001111 13444444322211
Q ss_pred ccccc---------------c--CCCCC--CCCCceEEEEECCCCcEEeeecCCCC----------CCCCcceEE--eCC
Q 040693 262 HKNFN---------------L--KPSKN--STIAGGWVAMDASNGNVLWSTADPSN----------GTAPGPVTV--ANG 310 (382)
Q Consensus 262 ~~~~~---------------~--~~~~~--~~~~g~v~a~d~~tG~~~W~~~~~~~----------~~~~~~~~~--~~~ 310 (382)
..... . .+... ....+.++.++...++..-....... ......+.+ +++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 276 (368)
T d1mdah_ 197 AAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp CCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred eeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCC
Confidence 11000 0 00000 02235566677666543321111110 000111222 346
Q ss_pred EEEEeeecC-------CCcEEEEeCCCCcEeEEEecCCceecceEE-eCCE--EEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 311 VLFGGSTYR-------QGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGC--IYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 311 ~v~~~~~~~-------~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~--lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
++|+..... ...|+.+|.++|+++-+...+.. ..++.+ .||+ ||++......+ +-+|..+|+.+-++
T Consensus 277 ~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~-~~~~a~spDG~~~ly~s~~~~~~v--~v~D~~tgk~~~~i 353 (368)
T d1mdah_ 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHD-SDAIIAAQDGASDNYANSAGTEVL--DIYDAASDQDQSSV 353 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEE-ECEEEECCSSSCEEEEEETTTTEE--EEEESSSCEEEEEC
T ss_pred EEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCc-eeEEEECCCCCEEEEEEeCCCCeE--EEEECCCCCEEEEE
Confidence 777765311 13588999999999887765543 233444 3553 78887755543 44578889988765
Q ss_pred E
Q 040693 381 C 381 (382)
Q Consensus 381 ~ 381 (382)
.
T Consensus 354 ~ 354 (368)
T d1mdah_ 354 E 354 (368)
T ss_dssp C
T ss_pred E
Confidence 4
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=4.8e-05 Score=66.90 Aligned_cols=178 Identities=12% Similarity=0.165 Sum_probs=115.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.+...+..+++............ .... .....++.+..++.+..+|
T Consensus 116 d~~i~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~-----~~~~~~~~~~~d~~i~~~d 163 (342)
T d2ovrb2 116 DATLRVWDIETGQCLHVLMGHVAAV---------------------------RCVQ-----YDGRRVVSGAYDFMVKVWD 163 (342)
T ss_dssp TSEEEEEESSSCCEEEEEECCSSCE---------------------------EEEE-----ECSSCEEEEETTSCEEEEE
T ss_pred ceeEEEeecccccceeeeecccccc---------------------------eeec-----cccceeeeecCCCeEEEee
Confidence 3778889999998888776543311 0010 1145667778889999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
...++.+..+.... ........++..++.+ ..++.|..+|.++++.+.+...... .
T Consensus 164 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~s~-----------------~~dg~i~~~d~~~~~~~~~~~~~~~--~ 219 (342)
T d2ovrb2 164 PETETCLHTLQGHT-----NRVYSLQFDGIHVVSG-----------------SLDTSIRVWDVETGNCIHTLTGHQS--L 219 (342)
T ss_dssp GGGTEEEEEECCCS-----SCEEEEEECSSEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCCS--C
T ss_pred cccceeeEEEcCcc-----cccccccCCCCEEEEE-----------------eCCCeEEEeecccceeeeEeccccc--c
Confidence 99888887766432 1222222355666655 3458899999999999988775542 2
Q ss_pred CcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee---cceEEeCCEEEEEeCceeEeecCCccCCCCCeEE
Q 040693 302 PGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY---GGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLY 378 (382)
Q Consensus 302 ~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~---~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~ 378 (382)
...+...+++++.++. ++.|+.+|..+.+....+....... ......++.++.++.+|. +.+|. .++|+.+.
T Consensus 220 v~~~~~~~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~-i~iwd--~~tg~~i~ 294 (342)
T d2ovrb2 220 TSGMELKDNILVSGNA--DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGT-VKLWD--LKTGEFIR 294 (342)
T ss_dssp EEEEEEETTEEEEEET--TSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSE-EEEEE--TTTCCEEE
T ss_pred eeEEecCCCEEEEEcC--CCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCE-EEEEE--CCCCCEEE
Confidence 3344556788887774 8999999999999888776543322 122234455555666655 55554 45688877
Q ss_pred EE
Q 040693 379 AF 380 (382)
Q Consensus 379 ~~ 380 (382)
.+
T Consensus 295 ~~ 296 (342)
T d2ovrb2 295 NL 296 (342)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6.9e-06 Score=74.20 Aligned_cols=162 Identities=8% Similarity=0.039 Sum_probs=99.6
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
+.+..+|..+++............. -.....+ +..++.+..++.+..+|.
T Consensus 163 ~~i~~~~~~~~~~~~~~~~~~~~v~---------------------------~l~~s~~---~~~~~~~~~d~~v~i~d~ 212 (337)
T d1gxra_ 163 GNIAVWDLHNQTLVRQFQGHTDGAS---------------------------CIDISND---GTKLWTGGLDNTVRSWDL 212 (337)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEE---------------------------EEEECTT---SSEEEEEETTSEEEEEET
T ss_pred ccccccccccccccccccccccccc---------------------------ccccccc---cccccccccccccccccc
Confidence 7899999998887766544322111 1111112 457778888999999999
Q ss_pred CCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC
Q 040693 223 DSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT 300 (382)
Q Consensus 223 ~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~ 300 (382)
.+++.+....... ....... ++..++++ ..++.+..+|.++++..-......
T Consensus 213 ~~~~~~~~~~~~~------~i~~l~~~~~~~~l~~~-----------------~~d~~i~i~d~~~~~~~~~~~~~~--- 266 (337)
T d1gxra_ 213 REGRQLQQHDFTS------QIFSLGYCPTGEWLAVG-----------------MESSNVEVLHVNKPDKYQLHLHES--- 266 (337)
T ss_dssp TTTEEEEEEECSS------CEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTSSCEEEECCCSS---
T ss_pred ccceeeccccccc------ceEEEEEccccccccee-----------------cccccccccccccccccccccccc---
Confidence 9999988776432 1112222 44556555 345789999999998764433222
Q ss_pred CCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCE-EEEEeCcee
Q 040693 301 APGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGC-IYMGNGYKV 362 (382)
Q Consensus 301 ~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~-lyv~~~~g~ 362 (382)
....+.+ ++.+++.++ .++.|..+|..+++.+.+......+.+-....+++ |+.++.+|.
T Consensus 267 ~i~~v~~s~~g~~l~s~s--~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~ 329 (337)
T d1gxra_ 267 CVLSLKFAYCGKWFVSTG--KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKK 329 (337)
T ss_dssp CEEEEEECTTSSEEEEEE--TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSC
T ss_pred ccceEEECCCCCEEEEEe--CCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCe
Confidence 1122222 234666666 48999999999999999887655443322223454 444455544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=0.00012 Score=64.15 Aligned_cols=142 Identities=15% Similarity=0.128 Sum_probs=96.3
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.+..+|...++.+......... ......+ +..++++..|+.+..+|
T Consensus 156 d~~i~~~d~~~~~~~~~~~~~~~~-----------------------------~~~~~~~---~~~l~s~~~dg~i~~~d 203 (342)
T d2ovrb2 156 DFMVKVWDPETETCLHTLQGHTNR-----------------------------VYSLQFD---GIHVVSGSLDTSIRVWD 203 (342)
T ss_dssp TSCEEEEEGGGTEEEEEECCCSSC-----------------------------EEEEEEC---SSEEEEEETTSCEEEEE
T ss_pred CCeEEEeecccceeeEEEcCcccc-----------------------------cccccCC---CCEEEEEeCCCeEEEee
Confidence 377888888888877766443221 1111111 46788889999999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTA 301 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~ 301 (382)
..+++.+....... .........++.++.+ ..++.|..+|..+++.............
T Consensus 204 ~~~~~~~~~~~~~~-----~~v~~~~~~~~~l~s~-----------------s~d~~i~iwd~~~~~~~~~~~~~~~~~~ 261 (342)
T d2ovrb2 204 VETGNCIHTLTGHQ-----SLTSGMELKDNILVSG-----------------NADSTVKIWDIKTGQCLQTLQGPNKHQS 261 (342)
T ss_dssp TTTCCEEEEECCCC-----SCEEEEEEETTEEEEE-----------------ETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred cccceeeeEecccc-----cceeEEecCCCEEEEE-----------------cCCCEEEEEecccccccccccccceeee
Confidence 99999988776432 1223333466777665 3458899999999998877765442211
Q ss_pred -CcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 302 -PGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 302 -~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
...+...+++++.++ .+|.|...|.++|+.+.++..
T Consensus 262 ~~~~~~~~~~~~~s~s--~Dg~i~iwd~~tg~~i~~~~~ 298 (342)
T d2ovrb2 262 AVTCLQFNKNFVITSS--DDGTVKLWDLKTGEFIRNLVT 298 (342)
T ss_dssp CEEEEEECSSEEEEEE--TTSEEEEEETTTCCEEEEEEE
T ss_pred ceeecccCCCeeEEEc--CCCEEEEEECCCCCEEEEEec
Confidence 122334456777766 489999999999999998864
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=3.2e-05 Score=67.16 Aligned_cols=169 Identities=9% Similarity=0.024 Sum_probs=99.8
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
+.+..+|..+++.+..+....... .......+ +..|++++.++.+..+|.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~---~~~l~~~~~d~~v~~~~~ 172 (317)
T d1vyhc1 123 KTIKMWEVQTGYCVKTFTGHREWV---------------------------RMVRPNQD---GTLIASCSNDQTVRVWVV 172 (317)
T ss_dssp SEEEEEETTTCCEEEEEECCSSCE---------------------------EEEEECTT---SSEEEEEETTSCEEEEET
T ss_pred cceeEeecccceeeeEEccCCCcc---------------------------eeeecccC---CCEEEEEeCCCeEEEEee
Confidence 788999999999888776443211 11111111 467778888999999999
Q ss_pred CCCCeeeeeccCCCCC-----------------CCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 223 DSGSLIWSMEAGPGGL-----------------GGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 223 ~tG~~~W~~~~~~~~~-----------------~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
.+++.+..+....... .+.........+..++.+ ..++.+..+|.+
T Consensus 173 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~d~~i~~~~~~ 235 (317)
T d1vyhc1 173 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG-----------------SRDKTIKMWDVS 235 (317)
T ss_dssp TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE-----------------ETTSEEEEEETT
T ss_pred ccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEec-----------------cCCCEEEEEECC
Confidence 9998877665321100 000000000022233333 345789999999
Q ss_pred CCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCC-EEEEEeCce
Q 040693 286 NGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNG-CIYMGNGYK 361 (382)
Q Consensus 286 tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g-~lyv~~~~g 361 (382)
+++.+.+....... ...+.. ++.+++.++ .+|.|..+|..+++++..++.......+..+ .++ .|+.++.+|
T Consensus 236 ~~~~~~~~~~~~~~--v~~~~~~~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg 311 (317)
T d1vyhc1 236 TGMCLMTLVGHDNW--VRGVLFHSGGKFILSCA--DDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 311 (317)
T ss_dssp TTEEEEEEECCSSC--EEEEEECSSSSCEEEEE--TTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTS
T ss_pred CCcEEEEEeCCCCC--EEEEEECCCCCEEEEEE--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCC
Confidence 99999887654321 112222 234566666 4899999999999999888754333333333 234 455555565
Q ss_pred e
Q 040693 362 V 362 (382)
Q Consensus 362 ~ 362 (382)
.
T Consensus 312 ~ 312 (317)
T d1vyhc1 312 T 312 (317)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.43 E-value=2.2e-05 Score=70.62 Aligned_cols=281 Identities=13% Similarity=0.050 Sum_probs=138.7
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|+++|+++++.+.+..+ .+..+| .+..||+........ .....++.|..+|.++|+++.+.........
T Consensus 33 ~D~~tg~~~~~~~~g~~~--~~a~Sp--Dg~~l~v~~~~~~~~----~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~-- 102 (355)
T d2bbkh_ 33 IDGEAGRVIGMIDGGFLP--NPVVAD--DGSFIAHASTVFSRI----ARGERTDYVEVFDPVTLLPTADIELPDAPRF-- 102 (355)
T ss_dssp EETTTTEEEEEEEECSSC--EEEECT--TSSCEEEEEEEEEET----TEEEEEEEEEEECTTTCCEEEEEEETTCCCC--
T ss_pred EECCCCcEEEEEECCCCC--ceEEcC--CCCEEEEEeCCCccc----cccCCCCEEEEEECCCCCEEEEEecCCccee--
Confidence 688899999988764322 122222 123466654211000 0001267899999999999999876432211
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
..+.... ...+.+++..+++.... ....+..+|..+++.+-..+.
T Consensus 103 --~~~~~~~--~~~~s~dg~~~~v~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 147 (355)
T d2bbkh_ 103 --LVGTYPW--MTSLTPDGKTLLFYQFS-------------------------------PAPAVGVVDLEGKAFKRMLDV 147 (355)
T ss_dssp --CBSCCGG--GEEECTTSSEEEEEECS-------------------------------SSCEEEEEETTTTEEEEEEEC
T ss_pred --ecCCCCc--eEEEecCCCeeEEecCC-------------------------------CCceeeeeecCCCcEeeEEec
Confidence 1111111 24677888888886532 125667777777777766554
Q ss_pred CCCccc---------ccccc------cCCCCCCCC-CCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCC
Q 040693 162 GGYDVW---------FGACN------WYLNPNCPP-GPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSG 225 (382)
Q Consensus 162 ~~~~~~---------~~~~~------~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG 225 (382)
...... .+... ......... ...........+.+..... ......++....++.++.++..++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~ 226 (355)
T d2bbkh_ 148 PDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAY-SQKAGRLVWPTYTGKIHQIDLSSG 226 (355)
T ss_dssp CSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEE-ETTTTEEEEEBTTSEEEEEECTTS
T ss_pred CCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccc-cCCCCeEEEecCCCeEEEEecCCC
Confidence 321100 00000 000000000 0000000111111110000 011345566677788888888877
Q ss_pred CeeeeeccC-CC------C-C-CCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCC
Q 040693 226 SLIWSMEAG-PG------G-L-GGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 226 ~~~W~~~~~-~~------~-~-~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
+..-..... .. . . .+........++..+|+........ ........|..+|.++++++.+.+..
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~v~v~d~~t~~~~~~~~~~ 299 (355)
T d2bbkh_ 227 DAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW-------RHKTASRFVVVLDAKTGERLAKFEMG 299 (355)
T ss_dssp SCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT-------CTTSCEEEEEEEETTTCCEEEEEEEE
T ss_pred cEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCce-------eecCCCCeEEEEeCCCCcEEEEecCC
Confidence 653211110 00 0 0 0001111111556666654331100 01123467999999999999888764
Q ss_pred CCCCCCcceEE--eCC-EEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 297 SNGTAPGPVTV--ANG-VLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 297 ~~~~~~~~~~~--~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
.. ...+.+ ++. ++|+... .++.|+++|.+||+++.+++.
T Consensus 300 ~~---~~~~a~spDG~~~l~v~~~-~d~~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 300 HE---IDSINVSQDEKPLLYALST-GDKTLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp EE---ECEEEECCSSSCEEEEEET-TTTEEEEEETTTCCEEEEECC
T ss_pred CC---EEEEEEcCCCCeEEEEEEC-CCCEEEEEECCCCCEEEEEeC
Confidence 32 112333 333 4565542 578999999999999998864
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=3.8e-05 Score=69.12 Aligned_cols=146 Identities=11% Similarity=0.064 Sum_probs=89.4
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..++.+..++.+..+|..+++.......... ....... ++..++.+ ..++.+..+
T Consensus 153 ~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~-----~v~~l~~s~~~~~~~~~-----------------~~d~~v~i~ 210 (337)
T d1gxra_ 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISNDGTKLWTG-----------------GLDNTVRSW 210 (337)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEE-----------------ETTSEEEEE
T ss_pred cccccccccccccccccccccccccccccccc-----ccccccccccccccccc-----------------ccccccccc
Confidence 45677788889999999999987766553211 1222222 44556555 345889999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCEEEEEeC
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGCIYMGNG 359 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~lyv~~~ 359 (382)
|.++++.+........ ...+.+ .+..+++++ .++.+..+|.++++..-.......+ .+..+ .+++++++.+
T Consensus 211 d~~~~~~~~~~~~~~~---i~~l~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~i-~~v~~s~~g~~l~s~s 284 (337)
T d1gxra_ 211 DLREGRQLQQHDFTSQ---IFSLGYCPTGEWLAVGM--ESSNVEVLHVNKPDKYQLHLHESCV-LSLKFAYCGKWFVSTG 284 (337)
T ss_dssp ETTTTEEEEEEECSSC---EEEEEECTTSSEEEEEE--TTSCEEEEETTSSCEEEECCCSSCE-EEEEECTTSSEEEEEE
T ss_pred ccccceeecccccccc---eEEEEEcccccccceec--ccccccccccccccccccccccccc-ceEEECCCCCEEEEEe
Confidence 9999999888775432 122222 245666666 4899999999988876443332322 23333 3555555443
Q ss_pred ceeEeecCCccCCCCCeEEEE
Q 040693 360 YKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 360 ~g~~~~~~~~~~~~g~~l~~~ 380 (382)
....+.+| |..+|+.+..+
T Consensus 285 ~Dg~i~iw--d~~~~~~~~~~ 303 (337)
T d1gxra_ 285 KDNLLNAW--RTPYGASIFQS 303 (337)
T ss_dssp TTSEEEEE--ETTTCCEEEEE
T ss_pred CCCeEEEE--ECCCCCEEEEc
Confidence 33345555 45567777654
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.41 E-value=4.7e-05 Score=69.13 Aligned_cols=192 Identities=14% Similarity=0.162 Sum_probs=108.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+++.+......... + .......+...++.+..+
T Consensus 142 dg~v~i~~~~~~~~~~~~~~h~~~-----------v--~~~~~~~~~~~~~~~~~~------------------------ 184 (388)
T d1erja_ 142 DRLIRIWDIENRKIVMILQGHEQD-----------I--YSLDYFPSGDKLVSGSGD------------------------ 184 (388)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSC-----------E--EEEEECTTSSEEEEEETT------------------------
T ss_pred cccccccccccccccccccccccc-----------c--cccccccccccccccccc------------------------
Confidence 889999999999988776531110 1 123344455566665543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.+..+|..+.+.+.......... ....... .+..|+++..
T Consensus 185 ---------~~i~~~d~~~~~~~~~~~~~~~~~----------------------------~~~~~~~--~~~~l~~~~~ 225 (388)
T d1erja_ 185 ---------RTVRIWDLRTGQCSLTLSIEDGVT----------------------------TVAVSPG--DGKYIAAGSL 225 (388)
T ss_dssp ---------SEEEEEETTTTEEEEEEECSSCEE----------------------------EEEECST--TCCEEEEEET
T ss_pred ---------eeeeeeeccccccccccccccccc----------------------------cccccCC--CCCeEEEEcC
Confidence 789999999888877765543310 0111111 1467778888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCC--cccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcE
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGG--AMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNV 289 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~--~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~ 289 (382)
++.+..+|..+++.............+. ....... ++..++++ ..++.+..+|.++++.
T Consensus 226 d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~-----------------~~d~~i~iwd~~~~~~ 288 (388)
T d1erja_ 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG-----------------SLDRSVKLWNLQNANN 288 (388)
T ss_dssp TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEEC-----
T ss_pred CCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEE-----------------ECCCcEEEEeccCCcc
Confidence 9999999999999998876543211111 1122222 34555554 3457899999988876
Q ss_pred EeeecCCCCC----------CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 290 LWSTADPSNG----------TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 290 ~W~~~~~~~~----------~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
......+... .....+.. ++.+++.++ .+|.|+.+|..+|+.+.+++..
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~--~dg~i~vwd~~~~~~~~~l~~H 349 (388)
T d1erja_ 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS--KDRGVLFWDKKSGNPLLMLQGH 349 (388)
T ss_dssp ----------CEEEEEECCSSCEEEEEECGGGCEEEEEE--TTSEEEEEETTTCCEEEEEECC
T ss_pred ccccccccccceeeecccccceEEEEEECCCCCEEEEEe--CCCEEEEEECCCCcEEEEEeCC
Confidence 5544332210 00111222 245677666 4899999999999999888753
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.39 E-value=0.0003 Score=61.76 Aligned_cols=233 Identities=11% Similarity=0.104 Sum_probs=130.4
Q ss_pred cCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCC
Q 040693 31 KGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNL 110 (382)
Q Consensus 31 ~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~ 110 (382)
++.|||+... ..+|..||+ +|+.+++......... ....-....+....+..++....
T Consensus 33 dg~i~VaD~~-------------n~rI~v~d~-~G~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~~~~~~~~~- 90 (279)
T d1q7fa_ 33 QNDIIVADTN-------------NHRIQIFDK-EGRFKFQFGECGKRDS-------QLLYPNRVAVVRNSGDIIVTERS- 90 (279)
T ss_dssp TCCEEEEEGG-------------GTEEEEECT-TSCEEEEECCBSSSTT-------CBSSEEEEEEETTTTEEEEEECG-
T ss_pred CCCEEEEECC-------------CCEEEEEeC-CCCEEEEecccCCCcc-------cccccccccccccccccceeccC-
Confidence 5789998752 678999996 7999988754221111 00000012333333444443221
Q ss_pred CCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCC
Q 040693 111 YSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFG 190 (382)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (382)
....|..++. +|+....+.....
T Consensus 91 ------------------------------~~~~i~~~~~-~g~~~~~~~~~~~-------------------------- 113 (279)
T d1q7fa_ 91 ------------------------------PTHQIQIYNQ-YGQFVRKFGATIL-------------------------- 113 (279)
T ss_dssp ------------------------------GGCEEEEECT-TSCEEEEECTTTC--------------------------
T ss_pred ------------------------------Cccccccccc-cccceeecCCCcc--------------------------
Confidence 1257777775 6888877744322
Q ss_pred CCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCC
Q 040693 191 EAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKP 269 (382)
Q Consensus 191 ~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~ 269 (382)
..|.-..+..+ +.++++....+.+..+|.+ |+.+.++..... .......++ .++.+|+...
T Consensus 114 ~~p~~~avd~~---G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~---~~~~~~i~~d~~g~i~v~d~----------- 175 (279)
T d1q7fa_ 114 QHPRGVTVDNK---GRIIVVECKVMRVIIFDQN-GNVLHKFGCSKH---LEFPNGVVVNDKQEIFISDN----------- 175 (279)
T ss_dssp SCEEEEEECTT---SCEEEEETTTTEEEEECTT-SCEEEEEECTTT---CSSEEEEEECSSSEEEEEEG-----------
T ss_pred cccceeccccC---CcEEEEeeccceeeEeccC-Cceeeccccccc---ccccceeeeccceeEEeeec-----------
Confidence 23332222211 3455555666788888865 888777653321 112222333 4567887633
Q ss_pred CCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc--eecc
Q 040693 270 SKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT--IYGG 346 (382)
Q Consensus 270 ~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~--~~~~ 346 (382)
..+.|+.+|. +|+.++++..+.......-+.++ ++.+|++....+..|..+++ +|+.++.+..+.. .-..
T Consensus 176 -----~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~ 248 (279)
T d1q7fa_ 176 -----RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFD 248 (279)
T ss_dssp -----GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEE
T ss_pred -----cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeE
Confidence 3467899986 68888888643321111223443 46788876423456888885 5999988765432 1122
Q ss_pred eEE-eCCEEEEEeCceeEeecCC
Q 040693 347 ASV-SNGCIYMGNGYKVTVGFGN 368 (382)
Q Consensus 347 p~~-~~g~lyv~~~~g~~~~~~~ 368 (382)
.++ .+|+|||++.+.. +.+|.
T Consensus 249 vav~~dG~l~V~~~n~~-v~~fr 270 (279)
T d1q7fa_ 249 VALMDDGSVVLASKDYR-LYIYR 270 (279)
T ss_dssp EEEETTTEEEEEETTTE-EEEEE
T ss_pred EEEeCCCcEEEEeCCCe-EEEEE
Confidence 333 4789999887644 44444
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=0.0002 Score=61.20 Aligned_cols=206 Identities=12% Similarity=0.048 Sum_probs=125.4
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
||.|..+|.++|+++.+++-.. +.+ ..+..++.+++.+..
T Consensus 34 Dg~i~vWd~~~~~~~~~l~~H~-----------~~V----~~v~~~~~~l~s~s~------------------------- 73 (293)
T d1p22a2 34 DNTIKIWDKNTLECKRILTGHT-----------GSV----LCLQYDERVIITGSS------------------------- 73 (293)
T ss_dssp SSCEEEEESSSCCEEEEECCCS-----------SCE----EEEECCSSEEEEEET-------------------------
T ss_pred CCeEEEEECCCCcEEEEEecCC-----------CCE----eeeecccceeecccc-------------------------
Confidence 8999999999999998875311 111 123344456655544
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
++.+...+..+++............. ... .....++.+..
T Consensus 74 --------D~~i~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~------~~~~~~~~~~~ 113 (293)
T d1p22a2 74 --------DSTVRVWDVNTGEMLNTLIHHCEAVL--------------------------HLR------FNNGMMVTCSK 113 (293)
T ss_dssp --------TSCEEEEESSSCCEEEEECCCCSCEE--------------------------EEE------CCTTEEEEEET
T ss_pred --------cccccccccccccccccccccccccc--------------------------ccc------ccccceeeccc
Confidence 38899999999998887765543211 000 11345666667
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
++.+..+|..+.+.......... ..............++.. ..++.+..+|.++++.+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~-----------------s~d~~i~~~d~~~~~~~~~~ 174 (293)
T d1p22a2 114 DRSIAVWDMASPTDITLRRVLVG--HRAAVNVVDFDDKYIVSA-----------------SGDRTIKVWNTSTCEFVRTL 174 (293)
T ss_dssp TSCEEEEECSSSSCCEEEEEECC--CSSCEEEEEEETTEEEEE-----------------ETTSEEEEEETTTCCEEEEE
T ss_pred ccceeEeeccccccccccccccc--cccccccceecccccccc-----------------cCCCceeeecCCCCcEEEEE
Confidence 77788888776654443332110 001111122244444444 23578999999999999887
Q ss_pred cCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCcee
Q 040693 294 ADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~ 362 (382)
..... ....+...+..++.+. .++.|..+|..+++.+...................|+.++.+|.
T Consensus 175 ~~~~~--~v~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~ 239 (293)
T d1p22a2 175 NGHKR--GIACLQYRDRLVVSGS--SDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGK 239 (293)
T ss_dssp ECCSS--CEEEEEEETTEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEECCSSEEEEEETTSC
T ss_pred ccccc--ccccccCCCCeEEEec--CCCEEEEEecccceeeeeecccceeeeeccccceEEEEEcCCCE
Confidence 75432 2223334566777766 48999999999999988876554433333334555555666655
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.28 E-value=3.8e-05 Score=72.43 Aligned_cols=197 Identities=10% Similarity=-0.013 Sum_probs=119.2
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+|.|..+|++||+++=+.+.+... ....+.+++.++|++..+
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~~~--------------~~v~fSpDG~~l~~~s~d------------------------ 82 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGYAV--------------HISRLSASGRYLFVIGRD------------------------ 82 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSSCE--------------EEEEECTTSCEEEEEETT------------------------
T ss_pred CCEEEEEECCCCcEEEEEeCCCCe--------------eEEEECCCCCEEEEEcCC------------------------
Confidence 899999999999999998874221 135788888899987543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.+..+|..|++..=..+......... +..+|. .++|| ..+++.+..
T Consensus 83 ---------g~v~~~d~~t~~~~~~~~i~~~~~~~~-------------------~~~s~~---~SpDG--~~l~vs~~~ 129 (432)
T d1qksa2 83 ---------GKVNMIDLWMKEPTTVAEIKIGSEARS-------------------IETSKM---EGWED--KYAIAGAYW 129 (432)
T ss_dssp ---------SEEEEEETTSSSCCEEEEEECCSEEEE-------------------EEECCS---TTCTT--TEEEEEEEE
T ss_pred ---------CCEEEEEeeCCCceEEEEEecCCCCCC-------------------eEEecc---cCCCC--CEEEEEcCC
Confidence 789999999988543333222100000 000000 01122 223455666
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCC------CCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLG------GGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~------g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
++.+..+|.++++++-.......... ......... ++..++++. ...+.+..+|.+
T Consensus 130 ~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~----------------~~~~~i~~~d~~ 193 (432)
T d1qksa2 130 PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----------------KETGKILLVDYT 193 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----------------TTTTEEEEEETT
T ss_pred CCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE----------------ccCCeEEEEEcc
Confidence 88999999999998876653211000 000011111 344444432 235789999999
Q ss_pred CCc--EEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 286 NGN--VLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 286 tG~--~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
+++ .+|++..... ...+.+ ++.++++++. ..+.+..+|.+++++++..+.+.
T Consensus 194 ~~~~~~~~~i~~g~~---~~~~~~spdg~~~~va~~-~~~~v~v~d~~~~~~~~~~~~g~ 249 (432)
T d1qksa2 194 DLNNLKTTEISAERF---LHDGGLDGSHRYFITAAN-ARNKLVVIDTKEGKLVAIEDTGG 249 (432)
T ss_dssp CSSEEEEEEEECCSS---EEEEEECTTSCEEEEEEG-GGTEEEEEETTTTEEEEEEECSS
T ss_pred CCCcceEEEEcccCc---cccceECCCCCEEEEecc-ccceEEEeecccceEEEEeccCc
Confidence 987 4566654331 111223 3456777764 56789999999999999988764
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.24 E-value=0.00045 Score=59.44 Aligned_cols=149 Identities=13% Similarity=0.072 Sum_probs=88.3
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..+++...++.+..+|..+++....+..... ....... ++..++.+ ..++.+..+
T Consensus 113 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~-----------------~~d~~v~~~ 170 (317)
T d1vyhc1 113 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-----WVRMVRPNQDGTLIASC-----------------SNDQTVRVW 170 (317)
T ss_dssp SSEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEECTTSSEEEEE-----------------ETTSCEEEE
T ss_pred CceEEeeccCcceeEeecccceeeeEEccCCC-----cceeeecccCCCEEEEE-----------------eCCCeEEEE
Confidence 46677888899999999999998877764321 1111112 34444444 335778888
Q ss_pred ECCCCcEEeeecCCCCC--------------------CCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc
Q 040693 283 DASNGNVLWSTADPSNG--------------------TAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT 342 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~--------------------~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~ 342 (382)
+..+++.+......... .........+..++.++ .++.+...|..+++.+.++.....
T Consensus 171 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~ 248 (317)
T d1vyhc1 171 VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDN 248 (317)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSS
T ss_pred eeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc--CCCEEEEEECCCCcEEEEEeCCCC
Confidence 88888877665432210 00001112234566666 489999999999999988875443
Q ss_pred eecceEE-eCCE-EEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 343 IYGGASV-SNGC-IYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 343 ~~~~p~~-~~g~-lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
....... .+++ |+.++.+|. +.+|. ..+++.+..|
T Consensus 249 ~v~~~~~~~~~~~l~s~~~dg~-i~iwd--~~~~~~~~~~ 285 (317)
T d1vyhc1 249 WVRGVLFHSGGKFILSCADDKT-LRVWD--YKNKRCMKTL 285 (317)
T ss_dssp CEEEEEECSSSSCEEEEETTTE-EEEEC--CTTSCCCEEE
T ss_pred CEEEEEECCCCCEEEEEECCCe-EEEEE--CCCCcEEEEE
Confidence 3333333 3444 445556655 44554 4567776655
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.23 E-value=0.00018 Score=64.17 Aligned_cols=225 Identities=9% Similarity=-0.022 Sum_probs=129.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
.+.++.+|.+++++.-.+.-.. .. ..+..+.+++.+++.+..
T Consensus 37 ~~~v~i~~~~~~~~~~~~~~H~-----------~~--v~~~~~sp~g~~latg~~------------------------- 78 (311)
T d1nr0a1 37 GTSVYTVPVGSLTDTEIYTEHS-----------HQ--TTVAKTSPSGYYCASGDV------------------------- 78 (311)
T ss_dssp TTEEEEEETTCSSCCEEECCCS-----------SC--EEEEEECTTSSEEEEEET-------------------------
T ss_pred CCEEEEEECCCCceeEEEcCCC-----------CC--EEEEEEeCCCCeEecccc-------------------------
Confidence 4567888888877766653210 01 124556777667766554
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceE-EEeeeCceeecEEEEEc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM-LSMYRNKVKHDIVVAVQ 212 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~v~~~~ 212 (382)
++.|..+|..+++...+..+.... .++. .....++ ..++++.
T Consensus 79 --------dg~i~iwd~~~~~~~~~~~~~~~~--------------------------~~v~~v~~s~d~---~~l~~~~ 121 (311)
T d1nr0a1 79 --------HGNVRIWDTTQTTHILKTTIPVFS--------------------------GPVKDISWDSES---KRIAAVG 121 (311)
T ss_dssp --------TSEEEEEESSSTTCCEEEEEECSS--------------------------SCEEEEEECTTS---CEEEEEE
T ss_pred --------CceEeeeeeecccccccccccccc--------------------------Cccccccccccc---ccccccc
Confidence 389999999998877766554331 1221 1122222 3444443
Q ss_pred --cCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCc
Q 040693 213 --KSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGN 288 (382)
Q Consensus 213 --~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~ 288 (382)
.+..+..+|.++++...+..... ........ ++..++++. ..++.|..+|.++++
T Consensus 122 ~~~~~~~~v~~~~~~~~~~~l~~h~-----~~v~~v~~~~~~~~~l~sg----------------s~d~~i~i~d~~~~~ 180 (311)
T d1nr0a1 122 EGRERFGHVFLFDTGTSNGNLTGQA-----RAMNSVDFKPSRPFRIISG----------------SDDNTVAIFEGPPFK 180 (311)
T ss_dssp CCSSCSEEEEETTTCCBCBCCCCCS-----SCEEEEEECSSSSCEEEEE----------------ETTSCEEEEETTTBE
T ss_pred ccccccccccccccccccccccccc-----cccccccccccceeeeccc----------------ccccccccccccccc
Confidence 24457778888888877654321 11111212 344444432 345789999999999
Q ss_pred EEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc-------eecceEE--eCCEEEEE
Q 040693 289 VLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT-------IYGGASV--SNGCIYMG 357 (382)
Q Consensus 289 ~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~-------~~~~p~~--~~g~lyv~ 357 (382)
........... ...+.. ++.+++.++ .++.+...|..+++.+..++.... ...+..+ .+..|+.+
T Consensus 181 ~~~~~~~~~~~--i~~v~~~p~~~~l~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tg 256 (311)
T d1nr0a1 181 FKSTFGEHTKF--VHSVRYNPDGSLFASTG--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256 (311)
T ss_dssp EEEEECCCSSC--EEEEEECTTSSEEEEEE--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccc--ccccccCcccccccccc--ccccccccccccccccccccccccccccccccccccccCCCCCEEEEE
Confidence 98887654321 122223 245666666 489999999999999888765421 1122233 23444445
Q ss_pred eCceeEeecCCccCCCCCeEEEEE
Q 040693 358 NGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 358 ~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
+.+| .+.+|. ..+|+.+..+.
T Consensus 257 s~Dg-~v~iwd--~~t~~~~~~l~ 277 (311)
T d1nr0a1 257 SADK-TIKIWN--VATLKVEKTIP 277 (311)
T ss_dssp ETTS-EEEEEE--TTTTEEEEEEE
T ss_pred eCCC-eEEEEE--CCCCcEEEEEE
Confidence 5555 456665 45688776654
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.20 E-value=5.7e-05 Score=68.95 Aligned_cols=62 Identities=11% Similarity=0.059 Sum_probs=44.5
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCC-EEEEeeecCCCcEEEEeCCCCcEeEEEecCC
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANG-VLFGGSTYRQGPIYAMDVKTGKILWSYDTGA 341 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~-~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~ 341 (382)
..+|..+|.++|+++-+.+.... ...+.+ +++ ++|+... .++.|+.+|.++||++-+++++.
T Consensus 293 ~~~v~v~D~~t~~~~~~~~~~~~---~~~~a~spDG~~~ly~s~~-~~~~v~v~D~~tgk~~~~i~~g~ 357 (368)
T d1mdah_ 293 AENTSSVTASVGQTSGPISNGHD---SDAIIAAQDGASDNYANSA-GTEVLDIYDAASDQDQSSVELDK 357 (368)
T ss_dssp EEEEEEEESSSCCEEECCEEEEE---ECEEEECCSSSCEEEEEET-TTTEEEEEESSSCEEEEECCCCS
T ss_pred CceEEEEECCCCcEeEEecCCCc---eeEEEECCCCCEEEEEEeC-CCCeEEEEECCCCCEEEEEECCC
Confidence 35688999999999887765431 112223 333 5777753 56889999999999999888764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.19 E-value=0.00014 Score=64.93 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=40.9
Q ss_pred EEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeC---CEEEEEeCc
Q 040693 306 TVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSN---GCIYMGNGY 360 (382)
Q Consensus 306 ~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~---g~lyv~~~~ 360 (382)
.++ ++.+|++.. ..+.|+.+|+ +|+++-+++++.....+++..+ +.|||++..
T Consensus 205 ~vD~~GnlWva~~-~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 205 VCDAEGHIWNARW-GEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp EECTTSCEEEEEE-TTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred EEcCCCCEEeeee-CCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEEECC
Confidence 344 578888875 4678999997 4999999999876667777743 789999763
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=98.10 E-value=0.00014 Score=68.46 Aligned_cols=190 Identities=10% Similarity=-0.015 Sum_probs=112.8
Q ss_pred cceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEe
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
++.|..+|.+||+++=+++... .|.-..+++|| ..+++++.++.+..+|
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~----------------------------~~~~v~fSpDG---~~l~~~s~dg~v~~~d 89 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGY----------------------------AVHISRLSASG---RYLFVIGRDGKVNMID 89 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----------------------------CEEEEEECTTS---CEEEEEETTSEEEEEE
T ss_pred CCEEEEEECCCCcEEEEEeCCC----------------------------CeeEEEECCCC---CEEEEEcCCCCEEEEE
Confidence 4899999999999999987652 12233334444 5677778889999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
..|++..-..+...........+.+.. |+..+|++.. ..+.+..+|.++++++-........
T Consensus 90 ~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~----------------~~~~v~i~d~~t~~~~~~~~~~~~~ 153 (432)
T d1qksa2 90 LWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY----------------WPPQYVIMDGETLEPKKIQSTRGMT 153 (432)
T ss_dssp TTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE----------------ETTEEEEEETTTCCEEEEEECCEEC
T ss_pred eeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcC----------------CCCeEEEEeCccccceeeeccCCcc
Confidence 999875433332211000011111211 6677877632 3478999999999988776543211
Q ss_pred CC-------Ccc--eEE--eCCEEEEeeecCCCcEEEEeCCCCc--EeEEEecCCceecceEE-eCCEEEEEeCceeEee
Q 040693 300 TA-------PGP--VTV--ANGVLFGGSTYRQGPIYAMDVKTGK--ILWSYDTGATIYGGASV-SNGCIYMGNGYKVTVG 365 (382)
Q Consensus 300 ~~-------~~~--~~~--~~~~v~~~~~~~~g~l~~ld~~tG~--ilw~~~~~~~~~~~p~~-~~g~lyv~~~~g~~~~ 365 (382)
.. ... +.. ++..++++.. ..+.+..+|..+++ .+++.+.+......... .+.++|+++.++..+.
T Consensus 154 ~~~~~~~~~~~~~~v~~s~dg~~~~vs~~-~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~ 232 (432)
T d1qksa2 154 YDEQEYHPEPRVAAILASHYRPEFIVNVK-ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLV 232 (432)
T ss_dssp TTTCCEESCCCEEEEEECSSSSEEEEEET-TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEE
T ss_pred ccceeccCCCceeEEEECCCCCEEEEEEc-cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEE
Confidence 11 111 111 2345444432 57899999999887 45676665433322222 3445788877666433
Q ss_pred cCCccCCCCCeEEEEE
Q 040693 366 FGNKNFTSGTSLYAFC 381 (382)
Q Consensus 366 ~~~~~~~~g~~l~~~~ 381 (382)
+ ++..+++.+..+.
T Consensus 233 v--~d~~~~~~~~~~~ 246 (432)
T d1qksa2 233 V--IDTKEGKLVAIED 246 (432)
T ss_dssp E--EETTTTEEEEEEE
T ss_pred E--eecccceEEEEec
Confidence 3 5556676666543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.09 E-value=0.00025 Score=63.71 Aligned_cols=84 Identities=8% Similarity=-0.008 Sum_probs=53.3
Q ss_pred CCceEEEEECC-CCcEEeee---cCCCCCCCCc--ceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecce
Q 040693 275 IAGGWVAMDAS-NGNVLWST---ADPSNGTAPG--PVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGA 347 (382)
Q Consensus 275 ~~g~v~a~d~~-tG~~~W~~---~~~~~~~~~~--~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p 347 (382)
..+.|+.+|.. +|++.++. ..+... ... -+.++ ++.||++.. ..+.|+.||+++|+++-+...+....++.
T Consensus 196 ~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-~~~pdGiavD~~GnlyVa~~-~~g~I~~~dp~~g~~~~~i~~p~~~~t~~ 273 (314)
T d1pjxa_ 196 PTKKLWSYDIKGPAKIENKKVWGHIPGTH-EGGADGMDFDEDNNLLVANW-GSSHIEVFGPDGGQPKMRIRCPFEKPSNL 273 (314)
T ss_dssp TTTEEEEEEEEETTEEEEEEEEEECCCCS-SCEEEEEEEBTTCCEEEEEE-TTTEEEEECTTCBSCSEEEECSSSCEEEE
T ss_pred cccceEEeeccCccccceeeEEEEccccc-cccceeeEEecCCcEEEEEc-CCCEEEEEeCCCCEEEEEEECCCCCEEEE
Confidence 35778888764 45554432 222211 111 23444 578888875 57899999999998887777766544555
Q ss_pred EEeC--CEEEEEeCc
Q 040693 348 SVSN--GCIYMGNGY 360 (382)
Q Consensus 348 ~~~~--g~lyv~~~~ 360 (382)
++.. ++|||+++.
T Consensus 274 afg~d~~~lyVt~~~ 288 (314)
T d1pjxa_ 274 HFKPQTKTIFVTEHE 288 (314)
T ss_dssp EECTTSSEEEEEETT
T ss_pred EEeCCCCEEEEEECC
Confidence 5533 469998764
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.06 E-value=0.0019 Score=59.70 Aligned_cols=243 Identities=11% Similarity=-0.032 Sum_probs=132.2
Q ss_pred CcCCCCceeeeeecCcCccceeeeceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCC
Q 040693 2 VKRSNGKLVWKTKLDDHARSFITMSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKL 81 (382)
Q Consensus 2 ld~~tGk~~W~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~ 81 (382)
+|++||+++.+++.+.. ...+..+| .+.++|++.. ++.|..+|.+|++.....++....
T Consensus 47 wD~~t~~~~~~l~~g~~-~~~vafSP--DGk~l~~~~~--------------d~~v~vwd~~t~~~~~~~~i~~~~---- 105 (426)
T d1hzua2 47 VDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGR--------------DARIDMIDLWAKEPTKVAEIKIGI---- 105 (426)
T ss_dssp EETTTCSEEEEEECCSS-EEEEEECT--TSCEEEEEET--------------TSEEEEEETTSSSCEEEEEEECCS----
T ss_pred EECCCCcEEEEEeCCCC-eeEEEECC--CCCEEEEEeC--------------CCCEEEEEccCCceeEEEEEeCCC----
Confidence 68999999999887543 23344444 3556677664 789999999999977665542111
Q ss_pred CCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCCCCCCCCcceEEEEECCCCcEEEEEec
Q 040693 82 NEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKCIEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 82 ~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
+..-+..++...+++.+++++... ++.+..+|..+++++.....
T Consensus 106 ----~~~~~~~s~~~spDG~~l~v~~~~--------------------------------~~~v~i~d~~~~~~~~~~~~ 149 (426)
T d1hzua2 106 ----EARSVESSKFKGYEDRYTIAGAYW--------------------------------PPQFAIMDGETLEPKQIVST 149 (426)
T ss_dssp ----EEEEEEECCSTTCTTTEEEEEEEE--------------------------------SSEEEEEETTTCCEEEEEEC
T ss_pred ----CCcceEEeeeecCCCCEEEEeecC--------------------------------CCeEEEEcCCccceeEEeec
Confidence 111111245556677788887643 37899999999999988765
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCC
Q 040693 162 GGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGG 241 (382)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~ 241 (382)
........ .+.....+.......++ ...++.....+.+..++..+++.+.....+. +.
T Consensus 150 ~~~~~~~~----------------~~~~~~~~~~i~~s~d~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~ 207 (426)
T d1hzua2 150 RGMTVDTQ----------------TYHPEPRVAAIIASHEH--PEFIVNVKETGKVLLVNYKDIDNLTVTSIGA----AP 207 (426)
T ss_dssp CEECSSSC----------------CEESCCCEEEEEECSSS--SEEEEEETTTTEEEEEECSSSSSCEEEEEEC----CS
T ss_pred cCCCccce----------------eecCCCceeEEEECCCC--CEEEEecCCCCeEEEEEeccccceeeEEecc----CC
Confidence 54321100 00001111222222222 2333334444566666666555433222211 11
Q ss_pred cccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eC-CEEEEee
Q 040693 242 AMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--AN-GVLFGGS 316 (382)
Q Consensus 242 ~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~-~~v~~~~ 316 (382)
..+.... ++.++++... ....+..+|..+++.+=................ .+ +.++...
T Consensus 208 ~~~~~~~~~~g~~~~~a~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T d1hzua2 208 FLADGGWDSSHRYFMTAAN----------------NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTS 271 (426)
T ss_dssp SEEEEEECTTSCEEEEEET----------------TCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEE
T ss_pred ccEeeeECCCCcEEEeeee----------------cccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEec
Confidence 2222222 5566666532 346788999999998877765543222222222 22 3444444
Q ss_pred ecCCCcEEEEeCCC-------CcEeEEEec
Q 040693 317 TYRQGPIYAMDVKT-------GKILWSYDT 339 (382)
Q Consensus 317 ~~~~g~l~~ld~~t-------G~ilw~~~~ 339 (382)
...++.+.+.+..+ ++....++.
T Consensus 272 ~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g 301 (426)
T d1hzua2 272 HLGDGSISLIGTDPKNHPQYAWKKVAELQG 301 (426)
T ss_dssp CTTTCEEEEEECCTTTCTTTBTSEEEEEEC
T ss_pred cCCCceEEEeeccccccccccceEeEEEec
Confidence 33466777777554 355555544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=0.0028 Score=55.14 Aligned_cols=134 Identities=10% Similarity=-0.004 Sum_probs=85.0
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
...++.+..++.+..+|..+++.+..+..... ....... ++..++++ ..++.+..+
T Consensus 196 ~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~-----~i~~v~~~p~~~~l~s~-----------------s~d~~i~~~ 253 (340)
T d1tbga_ 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHES-----DINAICFFPNGNAFATG-----------------SDDATCRLF 253 (340)
T ss_dssp SSEEEEEETTTEEEEEETTTTEEEEEECCCSS-----CEEEEEECTTSSEEEEE-----------------ETTSCEEEE
T ss_pred cceeEEeecCceEEEEECCCCcEEEEEeCCCC-----CeEEEEECCCCCEEEEE-----------------eCCCeEEEE
Confidence 46777888899999999999999988764221 1222222 44555554 345889999
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEE-eCCE-EEEEe
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASV-SNGC-IYMGN 358 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~-~~g~-lyv~~ 358 (382)
|..+.+................+.+ ++.++++++ .+|.|+.+|..+++.+-++........+..+ .++. |+.++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~--~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s 331 (340)
T d1tbga_ 254 DLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY--DDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGS 331 (340)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE
T ss_pred eecccccccccccccccCceEEEEECCCCCEEEEEE--CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEc
Confidence 9999988877654432111222333 245676666 4899999999999999887643333333333 2444 44445
Q ss_pred Ccee
Q 040693 359 GYKV 362 (382)
Q Consensus 359 ~~g~ 362 (382)
.+|.
T Consensus 332 ~Dg~ 335 (340)
T d1tbga_ 332 WDSF 335 (340)
T ss_dssp TTSC
T ss_pred cCCE
Confidence 5544
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.04 E-value=0.00056 Score=61.63 Aligned_cols=238 Identities=13% Similarity=0.107 Sum_probs=124.8
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCC-----CcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNE-----YAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTT 128 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 128 (382)
++.|..+|..+|+.+-+............. ..+......+..+.+++.+++.+..
T Consensus 82 d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~-------------------- 141 (388)
T d1erja_ 82 NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAE-------------------- 141 (388)
T ss_dssp BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEET--------------------
T ss_pred CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccc--------------------
Confidence 778999999999988776543221110000 0011111112345555556665544
Q ss_pred CCCCCCCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEE
Q 040693 129 PTSPDKCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIV 208 (382)
Q Consensus 129 ~~~~~~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v 208 (382)
++.|..+|..+++.+.........+. -..... ....+
T Consensus 142 -------------dg~v~i~~~~~~~~~~~~~~h~~~v~---------------------------~~~~~~---~~~~~ 178 (388)
T d1erja_ 142 -------------DRLIRIWDIENRKIVMILQGHEQDIY---------------------------SLDYFP---SGDKL 178 (388)
T ss_dssp -------------TSCEEEEETTTTEEEEEECCCSSCEE---------------------------EEEECT---TSSEE
T ss_pred -------------cccccccccccccccccccccccccc---------------------------cccccc---ccccc
Confidence 38899999999998887754332111 011111 14567
Q ss_pred EEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCC
Q 040693 209 VAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASN 286 (382)
Q Consensus 209 ~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~t 286 (382)
+.+..++.+..+|..+............ ....... ++..++.+ ..++.+..+|.++
T Consensus 179 ~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~-----------------~~d~~i~i~~~~~ 236 (388)
T d1erja_ 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDG-----VTTVAVSPGDGKYIAAG-----------------SLDRAVRVWDSET 236 (388)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSC-----EEEEEECSTTCCEEEEE-----------------ETTSCEEEEETTT
T ss_pred cccccceeeeeeeccccccccccccccc-----cccccccCCCCCeEEEE-----------------cCCCeEEEeeccc
Confidence 7888899999999998887776654321 1111111 34445544 3457899999999
Q ss_pred CcEEeeecCCCCCC--CCcc---eEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC------------ceecce
Q 040693 287 GNVLWSTADPSNGT--APGP---VTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA------------TIYGGA 347 (382)
Q Consensus 287 G~~~W~~~~~~~~~--~~~~---~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~------------~~~~~p 347 (382)
++...+........ ...+ +.+ ++..++.++ .++.|..+|..+++......... ......
T Consensus 237 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (388)
T d1erja_ 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS--LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV 314 (388)
T ss_dssp CCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE--TTSEEEEEEC---------------CEEEEEECCSSCEEEE
T ss_pred CccceeeccccccccCCCCCEEEEEECCCCCEEEEEE--CCCcEEEEeccCCccccccccccccceeeecccccceEEEE
Confidence 99998876433111 1111 222 235666666 48999999988776554333221 111122
Q ss_pred EE--eCCEEEEEeCceeEeecCCccCCCCCeEEEEE
Q 040693 348 SV--SNGCIYMGNGYKVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 348 ~~--~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~~~ 381 (382)
.. .+..|+.++.+|. +.+| |..+|+.+..|.
T Consensus 315 ~~s~~~~~l~sg~~dg~-i~vw--d~~~~~~~~~l~ 347 (388)
T d1erja_ 315 ATTQNDEYILSGSKDRG-VLFW--DKKSGNPLLMLQ 347 (388)
T ss_dssp EECGGGCEEEEEETTSE-EEEE--ETTTCCEEEEEE
T ss_pred EECCCCCEEEEEeCCCE-EEEE--ECCCCcEEEEEe
Confidence 22 2345555666665 3444 566788887663
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=0.0031 Score=53.28 Aligned_cols=100 Identities=10% Similarity=0.106 Sum_probs=67.2
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
...++....|+.+..+|..+++.+..++.... ........+..++.+ ..++.|..+|.
T Consensus 148 ~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~-----~v~~~~~~~~~l~~~-----------------~~dg~i~i~d~ 205 (293)
T d1p22a2 148 DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-----GIACLQYRDRLVVSG-----------------SSDNTIRLWDI 205 (293)
T ss_dssp TTEEEEEETTSEEEEEETTTCCEEEEEECCSS-----CEEEEEEETTEEEEE-----------------ETTSCEEEEET
T ss_pred ccccccccCCCceeeecCCCCcEEEEEccccc-----ccccccCCCCeEEEe-----------------cCCCEEEEEec
Confidence 45667778899999999999999988774321 122222355666555 34588999999
Q ss_pred CCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCC
Q 040693 285 SNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKT 330 (382)
Q Consensus 285 ~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~t 330 (382)
++++.+........ ........+.+++.++ .+|.|...|..+
T Consensus 206 ~~~~~~~~~~~~~~--~v~~~~~~~~~l~sg~--~dg~i~iwd~~~ 247 (293)
T d1p22a2 206 ECGACLRVLEGHEE--LVRCIRFDNKRIVSGA--YDGKIKVWDLVA 247 (293)
T ss_dssp TTCCEEEEECCCSS--CEEEEECCSSEEEEEE--TTSCEEEEEHHH
T ss_pred ccceeeeeecccce--eeeeccccceEEEEEc--CCCEEEEEECCC
Confidence 99999887765432 1122223445666666 489999988643
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.98 E-value=0.00084 Score=59.78 Aligned_cols=171 Identities=13% Similarity=0.047 Sum_probs=99.7
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCcEEEEEeC
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSGFAWALDR 222 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g~l~ald~ 222 (382)
..+..++.++|+.+.+.......+. -..+..++ ...++++..|+.+..+|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~h~~~v~---------------------------~~~~~~~~--~~~~~~~~~d~~v~~~d~ 189 (325)
T d1pgua1 139 NFGVFISWDSGNSLGEVSGHSQRIN---------------------------ACHLKQSR--PMRSMTVGDDGSVVFYQG 189 (325)
T ss_dssp CSEEEEETTTCCEEEECCSCSSCEE---------------------------EEEECSSS--SCEEEEEETTTEEEEEET
T ss_pred ceEEEEeecccccceeeeecccccc---------------------------cccccccc--cceEEEeecccccccccc
Confidence 5688888899999888754322110 01111122 345667778899999999
Q ss_pred CCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC
Q 040693 223 DSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT 300 (382)
Q Consensus 223 ~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~ 300 (382)
.+++..-....... .......... +.+.++++. ..++.|..+|.++++.+-+........
T Consensus 190 ~~~~~~~~~~~~~~--~~~~v~~v~~~pd~~~~l~s~----------------~~d~~i~iwd~~~~~~~~~l~~~~~~v 251 (325)
T d1pgua1 190 PPFKFSASDRTHHK--QGSFVRDVEFSPDSGEFVITV----------------GSDRKISCFDGKSGEFLKYIEDDQEPV 251 (325)
T ss_dssp TTBEEEEEECSSSC--TTCCEEEEEECSTTCCEEEEE----------------ETTCCEEEEETTTCCEEEECCBTTBCC
T ss_pred cccccceecccccC--CCCccEEeeeccccceecccc----------------ccccceeeeeecccccccccccccccc
Confidence 88876655543211 1111222222 333444432 345889999999999887766444222
Q ss_pred CCcceE--E-eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceec----ceEE-eCCEEEEEeCcee
Q 040693 301 APGPVT--V-ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYG----GASV-SNGCIYMGNGYKV 362 (382)
Q Consensus 301 ~~~~~~--~-~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~----~p~~-~~g~lyv~~~~g~ 362 (382)
...... . ++.+++.++ .++.|...|..+++.+-++........ .... .++.|+.++.+|.
T Consensus 252 ~~~~~s~~~~dg~~l~s~s--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~ 319 (325)
T d1pgua1 252 QGGIFALSWLDSQKFATVG--ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGT 319 (325)
T ss_dssp CSCEEEEEESSSSEEEEEE--TTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSC
T ss_pred ccceeeeeccCCCEEEEEe--CCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCE
Confidence 222211 1 245666666 489999999999999988776543221 1222 3456665666655
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.97 E-value=0.0017 Score=57.97 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=55.8
Q ss_pred eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC-CCcEEeeecC----C-CCCCCCcceEEe-CCEEEEeeecCCC
Q 040693 249 DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS-NGNVLWSTAD----P-SNGTAPGPVTVA-NGVLFGGSTYRQG 321 (382)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~-tG~~~W~~~~----~-~~~~~~~~~~~~-~~~v~~~~~~~~g 321 (382)
+++.+|++. ...++|+.+|.. .|........ . .......-+.++ ++.||++.. ..+
T Consensus 187 dg~~lyvad----------------~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~-~~g 249 (319)
T d2dg1a1 187 DEKVLWVTE----------------TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY-GQG 249 (319)
T ss_dssp TSSEEEEEE----------------GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE-TTT
T ss_pred ccceEEEec----------------ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc-CCC
Confidence 567788873 235778988865 3433322111 0 000011124454 578898875 578
Q ss_pred cEEEEeCCCCcEeEEEecCCc------eecceEE--eCCEEEEEeCc
Q 040693 322 PIYAMDVKTGKILWSYDTGAT------IYGGASV--SNGCIYMGNGY 360 (382)
Q Consensus 322 ~l~~ld~~tG~ilw~~~~~~~------~~~~p~~--~~g~lyv~~~~ 360 (382)
.|..||+ +|+++-++.++.. ...++.. ..+++|+++.+
T Consensus 250 ~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 295 (319)
T d2dg1a1 250 RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND 295 (319)
T ss_dssp EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred EEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcCC
Confidence 9999997 5999999988753 1233334 34577777653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.94 E-value=0.0044 Score=54.58 Aligned_cols=139 Identities=10% Similarity=0.004 Sum_probs=73.4
Q ss_pred cEEEE-EccCcEEEEEeCCCCCeeeeeccC---CCCCCCCc--ccceeeeCCeEEEEecCccccccccCCCCCCCCCceE
Q 040693 206 DIVVA-VQKSGFAWALDRDSGSLIWSMEAG---PGGLGGGA--MWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGW 279 (382)
Q Consensus 206 ~~v~~-~~~~g~l~ald~~tG~~~W~~~~~---~~~~~g~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v 279 (382)
+.+++ ...++.++.+|..++........+ ........ ..+...+++.+|+.. ...+.|
T Consensus 124 g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~----------------~~~~~i 187 (302)
T d2p4oa1 124 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSN----------------TEKMLL 187 (302)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEE----------------TTTTEE
T ss_pred CCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeec----------------CCCCeE
Confidence 34444 456788999999877543322211 00001111 112233677788764 335778
Q ss_pred EEEECCCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee--cceEE-----eC
Q 040693 280 VAMDASNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY--GGASV-----SN 351 (382)
Q Consensus 280 ~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~--~~p~~-----~~ 351 (382)
+.++.......-.............+.++ ++.+|++.. ..+.|..++++ |+.....+...+.. .+.++ ..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~-~~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~ 265 (302)
T d2p4oa1 188 LRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH-IYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDC 265 (302)
T ss_dssp EEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB-TTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTT
T ss_pred EeccccccccccccccccCCCCCcceEECCCCCEEEEEc-CCCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCC
Confidence 88887765432221110000112234454 567888764 57889999986 77655554433222 22333 23
Q ss_pred CEEEEEeCcee
Q 040693 352 GCIYMGNGYKV 362 (382)
Q Consensus 352 g~lyv~~~~g~ 362 (382)
+.|||++..|.
T Consensus 266 ~~Lyvtt~~g~ 276 (302)
T d2p4oa1 266 TAIYVVTNGGM 276 (302)
T ss_dssp TEEEEEECTTS
T ss_pred CEEEEECCCCc
Confidence 57999987643
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=0.0041 Score=54.05 Aligned_cols=99 Identities=10% Similarity=0.067 Sum_probs=61.2
Q ss_pred CCceEEEEECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc--eecceEE-
Q 040693 275 IAGGWVAMDASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT--IYGGASV- 349 (382)
Q Consensus 275 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~--~~~~p~~- 349 (382)
.++.+..+|.++++.+.+....... ...+.+ ++.+++.++ .++.+..+|..+.+.+..+..... ......+
T Consensus 204 ~d~~v~i~d~~~~~~~~~~~~h~~~--i~~v~~~p~~~~l~s~s--~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 279 (340)
T d1tbga_ 204 CDASAKLWDVREGMCRQTFTGHESD--INAICFFPNGNAFATGS--DDATCRLFDLRADQELMTYSHDNIICGITSVSFS 279 (340)
T ss_dssp TTTEEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSEEEEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred cCceEEEEECCCCcEEEEEeCCCCC--eEEEEECCCCCEEEEEe--CCCeEEEEeecccccccccccccccCceEEEEEC
Confidence 4578999999999999887754321 112222 245666666 489999999999888777654332 1122222
Q ss_pred eCC-EEEEEeCceeEeecCCccCCCCCeEEEE
Q 040693 350 SNG-CIYMGNGYKVTVGFGNKNFTSGTSLYAF 380 (382)
Q Consensus 350 ~~g-~lyv~~~~g~~~~~~~~~~~~g~~l~~~ 380 (382)
.++ .|++++.+|. +.+| |..+++.+..+
T Consensus 280 ~~~~~l~~g~~dg~-i~iw--d~~~~~~~~~~ 308 (340)
T d1tbga_ 280 KSGRLLLAGYDDFN-CNVW--DALKADRAGVL 308 (340)
T ss_dssp SSSCEEEEEETTSC-EEEE--ETTTCCEEEEE
T ss_pred CCCCEEEEEECCCE-EEEE--ECCCCcEEEEE
Confidence 234 4555555655 4444 55668877665
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.87 E-value=0.0012 Score=61.28 Aligned_cols=195 Identities=9% Similarity=-0.046 Sum_probs=110.9
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+|.|..+|.+||+++.+.+..... ....+.+++.++|++..+
T Consensus 41 dg~v~vwD~~t~~~~~~l~~g~~~--------------~~vafSPDGk~l~~~~~d------------------------ 82 (426)
T d1hzua2 41 AGQIALVDGDSKKIVKVIDTGYAV--------------HISRMSASGRYLLVIGRD------------------------ 82 (426)
T ss_dssp TTEEEEEETTTCSEEEEEECCSSE--------------EEEEECTTSCEEEEEETT------------------------
T ss_pred CCEEEEEECCCCcEEEEEeCCCCe--------------eEEEECCCCCEEEEEeCC------------------------
Confidence 899999999999999998864221 136788888899887643
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEe--eeCceeecEE-EE
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSM--YRNKVKHDIV-VA 210 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~g~~~~~v-~~ 210 (382)
+.+..+|.+||+.....+....... ..++.+. ..+| ..+ +.
T Consensus 83 ---------~~v~vwd~~t~~~~~~~~i~~~~~~------------------------~~~~~s~~~spDG---~~l~v~ 126 (426)
T d1hzua2 83 ---------ARIDMIDLWAKEPTKVAEIKIGIEA------------------------RSVESSKFKGYED---RYTIAG 126 (426)
T ss_dssp ---------SEEEEEETTSSSCEEEEEEECCSEE------------------------EEEEECCSTTCTT---TEEEEE
T ss_pred ---------CCEEEEEccCCceeEEEEEeCCCCC------------------------cceEEeeeecCCC---CEEEEe
Confidence 7899999999997765554322100 0011110 1122 344 44
Q ss_pred EccCcEEEEEeCCCCCeeeeeccCCCCCC-------CCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 211 VQKSGFAWALDRDSGSLIWSMEAGPGGLG-------GGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 211 ~~~~g~l~ald~~tG~~~W~~~~~~~~~~-------g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
...++.+..+|.++++++........... +........ ++..+++.. ...+.+..+
T Consensus 127 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~----------------~~~~~i~~~ 190 (426)
T d1hzua2 127 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV----------------KETGKVLLV 190 (426)
T ss_dssp EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE----------------TTTTEEEEE
T ss_pred ecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEec----------------CCCCeEEEE
Confidence 45678899999999998877664321100 000000001 222222221 123556666
Q ss_pred ECCCCcEEeeecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecC
Q 040693 283 DASNGNVLWSTADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTG 340 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~ 340 (382)
+..+++.+-....+... ....+.+ ++.+++++.. ....+..+|..+++++-..+.+
T Consensus 191 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~ 248 (426)
T d1hzua2 191 NYKDIDNLTVTSIGAAP-FLADGGWDSSHRYFMTAAN-NSNKVAVIDSKDRRLSALVDVG 248 (426)
T ss_dssp ECSSSSSCEEEEEECCS-SEEEEEECTTSCEEEEEET-TCSEEEEEETTTTEEEEEEECS
T ss_pred EeccccceeeEEeccCC-ccEeeeECCCCcEEEeeee-cccceeeeecccccEEEEeccC
Confidence 66665533222222111 1111222 3456777653 5677889999999988777654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.77 E-value=0.0038 Score=55.30 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=83.1
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceE-EEeeeCceeecEEEEEccCcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMM-LSMYRNKVKHDIVVAVQKSGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~g~~~~~v~~~~~~g~l~ald 221 (382)
+.+..+|..+++..-........ ..++. ..+.+++ +..+++++.|+.+..+|
T Consensus 182 ~~v~~~d~~~~~~~~~~~~~~~~-------------------------~~~v~~v~~~pd~--~~~l~s~~~d~~i~iwd 234 (325)
T d1pgua1 182 GSVVFYQGPPFKFSASDRTHHKQ-------------------------GSFVRDVEFSPDS--GEFVITVGSDRKISCFD 234 (325)
T ss_dssp TEEEEEETTTBEEEEEECSSSCT-------------------------TCCEEEEEECSTT--CCEEEEEETTCCEEEEE
T ss_pred cccccccccccccceecccccCC-------------------------CCccEEeeecccc--ceeccccccccceeeee
Confidence 78888998888776655443221 11111 1223333 46778888899999999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT 300 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~ 300 (382)
..+++.+-.++..... .....+.... ++..+..+ ..++.|..+|+++|+.+-+........
T Consensus 235 ~~~~~~~~~l~~~~~~-v~~~~~s~~~~dg~~l~s~-----------------s~D~~i~iwd~~~~~~~~~~~~~~~~~ 296 (325)
T d1pgua1 235 GKSGEFLKYIEDDQEP-VQGGIFALSWLDSQKFATV-----------------GADATIRVWDVTTSKCVQKWTLDKQQL 296 (325)
T ss_dssp TTTCCEEEECCBTTBC-CCSCEEEEEESSSSEEEEE-----------------ETTSEEEEEETTTTEEEEEEECCTTCG
T ss_pred eccccccccccccccc-cccceeeeeccCCCEEEEE-----------------eCCCeEEEEECCCCCEEEEEEecCCcc
Confidence 9999988776643211 1122233332 34455544 345889999999999887766544221
Q ss_pred CCcc--eE-EeCCEEEEeeecCCCcEEEEeC
Q 040693 301 APGP--VT-VANGVLFGGSTYRQGPIYAMDV 328 (382)
Q Consensus 301 ~~~~--~~-~~~~~v~~~~~~~~g~l~~ld~ 328 (382)
.... +. ..++.++.++ .+|.|..+|+
T Consensus 297 ~~~~~~~~~~~~~~l~s~s--~dg~i~vwdl 325 (325)
T d1pgua1 297 GNQQVGVVATGNGRIISLS--LDGTLNFYEL 325 (325)
T ss_dssp GGCEEEEEEEETTEEEEEE--TTSCEEEEET
T ss_pred cCeEEEEEECCCCEEEEEE--CCCEEEEEEC
Confidence 1111 11 2346776666 4788888774
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.76 E-value=0.0013 Score=59.44 Aligned_cols=228 Identities=6% Similarity=-0.071 Sum_probs=117.7
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|.++++..-...+.. . ...+ .+..+.+++.+++.+..+
T Consensus 28 ~~~i~iw~~~~~~~~~~~~l~g-H--------~~~V--~~l~fsp~~~~l~s~s~D------------------------ 72 (371)
T d1k8kc_ 28 NHEVHIYEKSGNKWVQVHELKE-H--------NGQV--TGVDWAPDSNRIVTCGTD------------------------ 72 (371)
T ss_dssp SSEEEEEEEETTEEEEEEEEEC-C--------SSCE--EEEEEETTTTEEEEEETT------------------------
T ss_pred CCEEEEEECCCCCEEEEEEecC-C--------CCCE--EEEEECCCCCEEEEEECC------------------------
Confidence 7889999988887554444321 0 0111 234567777777665443
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
+.|..+|..+++..-........ ....-....++ +..++++..
T Consensus 73 ---------~~i~vWd~~~~~~~~~~~~~~~~-------------------------~~v~~i~~~p~---~~~l~~~s~ 115 (371)
T d1k8kc_ 73 ---------RNAYVWTLKGRTWKPTLVILRIN-------------------------RAARCVRWAPN---EKKFAVGSG 115 (371)
T ss_dssp ---------SCEEEEEEETTEEEEEEECCCCS-------------------------SCEEEEEECTT---SSEEEEEET
T ss_pred ---------CeEEEEeeccccccccccccccc-------------------------ccccccccccc---cccceeecc
Confidence 77888888777655444443221 01111112222 356777888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.+..++.+..+..+........... ....... ++..+..+ ..++.+..+|...++...
T Consensus 116 d~~i~i~~~~~~~~~~~~~~~~~~~~~-~v~~v~~~p~~~~l~s~-----------------s~D~~v~v~~~~~~~~~~ 177 (371)
T d1k8kc_ 116 SRVISICYFEQENDWWVCKHIKKPIRS-TVLSLDWHPNSVLLAAG-----------------SCDFKCRIFSAYIKEVEE 177 (371)
T ss_dssp TSSEEEEEEETTTTEEEEEEECTTCCS-CEEEEEECTTSSEEEEE-----------------ETTSCEEEEECCCTTTSC
T ss_pred cCcceeeeeeccccccccccccccccc-ccccccccccccceecc-----------------ccCcEEEEEeeccCcccc
Confidence 887777776666655554422111111 1111111 33444333 234667777766554322
Q ss_pred eecCC-------C---------CCCCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceE-EeCC
Q 040693 292 STADP-------S---------NGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGAS-VSNG 352 (382)
Q Consensus 292 ~~~~~-------~---------~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~-~~~g 352 (382)
..... . .......+.+ ++.+++.++ .++.|...|..+++.+.++.....-..+.. ..++
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~ 255 (371)
T d1k8kc_ 178 RPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS--HDSTVCLADADKKMAVATLASETLPLLAVTFITES 255 (371)
T ss_dssp CCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE--TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT
T ss_pred ccccccccccccceeeeeeccCccCcEEEEEeecccccccccc--cCCcceEEeeecccceeeeecccccceeeeecCCC
Confidence 21110 0 0000111122 345666666 489999999999999888876543222332 3578
Q ss_pred EEEEEeCceeEeecCCccCCCC
Q 040693 353 CIYMGNGYKVTVGFGNKNFTSG 374 (382)
Q Consensus 353 ~lyv~~~~g~~~~~~~~~~~~g 374 (382)
+++++..++. ..++..+..++
T Consensus 256 ~~la~g~d~~-~~~~~~~~~~~ 276 (371)
T d1k8kc_ 256 SLVAAGHDCF-PVLFTYDSAAG 276 (371)
T ss_dssp EEEEEETTSS-CEEEEEETTTT
T ss_pred CEEEEEcCCc-eEEEEeeCCCc
Confidence 8877766554 22344444333
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.63 E-value=0.011 Score=51.30 Aligned_cols=188 Identities=18% Similarity=0.169 Sum_probs=104.4
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEE-ccCcEEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAV-QKSGFAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~-~~~g~l~ald 221 (382)
.+|..+|+ +|+.++++....... +....|.-.....+. +..+++. ..++.+..++
T Consensus 44 ~rI~v~d~-~G~~~~~~~~~~~~~---------------------~~~~~p~~~~~~~~~--~~~~~~~~~~~~~i~~~~ 99 (279)
T d1q7fa_ 44 HRIQIFDK-EGRFKFQFGECGKRD---------------------SQLLYPNRVAVVRNS--GDIIVTERSPTHQIQIYN 99 (279)
T ss_dssp TEEEEECT-TSCEEEEECCBSSST---------------------TCBSSEEEEEEETTT--TEEEEEECGGGCEEEEEC
T ss_pred CEEEEEeC-CCCEEEEecccCCCc---------------------ccccccccccccccc--cccceeccCCcccccccc
Confidence 78999996 599999885432210 011222222111111 2344433 3455677777
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGT 300 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~ 300 (382)
. +|+....+.... .......++ .++.+|+... ....+..++. +|+.+.+........
T Consensus 100 ~-~g~~~~~~~~~~----~~~p~~~avd~~G~i~v~~~----------------~~~~~~~~~~-~g~~~~~~g~~~~~~ 157 (279)
T d1q7fa_ 100 Q-YGQFVRKFGATI----LQHPRGVTVDNKGRIIVVEC----------------KVMRVIIFDQ-NGNVLHKFGCSKHLE 157 (279)
T ss_dssp T-TSCEEEEECTTT----CSCEEEEEECTTSCEEEEET----------------TTTEEEEECT-TSCEEEEEECTTTCS
T ss_pred c-cccceeecCCCc----ccccceeccccCCcEEEEee----------------ccceeeEecc-CCceeeccccccccc
Confidence 5 588877765432 112233333 3456666532 2356777875 688777765443211
Q ss_pred CCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCcee--cceEE-eCCEEEEEeCcee-EeecCCccCCCCC
Q 040693 301 APGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIY--GGASV-SNGCIYMGNGYKV-TVGFGNKNFTSGT 375 (382)
Q Consensus 301 ~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~--~~p~~-~~g~lyv~~~~g~-~~~~~~~~~~~g~ 375 (382)
....+.++ ++.+|++.. ..+.|+.+|.+ |+.++++...+... ...++ .+|+|||+...+. .+.+| ..+|+
T Consensus 158 ~~~~i~~d~~g~i~v~d~-~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f---~~~G~ 232 (279)
T d1q7fa_ 158 FPNGVVVNDKQEIFISDN-RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF---TQDGQ 232 (279)
T ss_dssp SEEEEEECSSSEEEEEEG-GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE---CTTSC
T ss_pred ccceeeeccceeEEeeec-cccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEE---CCCCC
Confidence 22233344 468888775 57889999964 89998875433221 12233 4688999976432 33333 35688
Q ss_pred eEEEEE
Q 040693 376 SLYAFC 381 (382)
Q Consensus 376 ~l~~~~ 381 (382)
.+..+.
T Consensus 233 ~~~~~~ 238 (279)
T d1q7fa_ 233 LISALE 238 (279)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 887663
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.49 E-value=0.0019 Score=55.81 Aligned_cols=141 Identities=11% Similarity=-0.030 Sum_probs=76.5
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..+++++.++.+..+|..+++..-....... ........ ++..++.+ ..++.+..+
T Consensus 148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~-----------------~~d~~i~~~ 206 (299)
T d1nr0a2 148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHP----AEITSVAFSNNGAFLVAT-----------------DQSRKVIPY 206 (299)
T ss_dssp SCEEEEEETTSEEEEEEEETTEEEEEEEEECS----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEE
T ss_pred cccccccccccccccccccccccccccccccc----cccccccccccccccccc-----------------ccccccccc
Confidence 35777888899999999988875543322110 11122222 44555554 345789999
Q ss_pred ECCCCcEEeeecCCCCC-CCCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC---ceecceEE-eCCEEE
Q 040693 283 DASNGNVLWSTADPSNG-TAPGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA---TIYGGASV-SNGCIY 355 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~-~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~---~~~~~p~~-~~g~ly 355 (382)
|..+++..-........ .....+.+ ++.+++.++ .++.|+..|.++++..-...... ........ .++.|+
T Consensus 207 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs--~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 284 (299)
T d1nr0a2 207 SVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS--LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIV 284 (299)
T ss_dssp EGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE--TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEE
T ss_pred cccccccccccccccccccccccccccccccceEEEc--CCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEE
Confidence 99988765443321110 01112222 234666666 48999999998876543332221 12222233 345555
Q ss_pred EEeCceeEeecCCc
Q 040693 356 MGNGYKVTVGFGNK 369 (382)
Q Consensus 356 v~~~~g~~~~~~~~ 369 (382)
.++.+| .+.+|.+
T Consensus 285 s~s~D~-~i~iWdl 297 (299)
T d1nr0a2 285 SAGQDS-NIKFWNV 297 (299)
T ss_dssp EEETTS-CEEEEEC
T ss_pred EEeCCC-EEEEEec
Confidence 555554 4555554
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=97.36 E-value=0.0089 Score=51.93 Aligned_cols=28 Identities=7% Similarity=-0.111 Sum_probs=22.4
Q ss_pred eCCEEEEEeCceeEeecCCccCCCCCeE
Q 040693 350 SNGCIYMGNGYKVTVGFGNKNFTSGTSL 377 (382)
Q Consensus 350 ~~g~lyv~~~~g~~~~~~~~~~~~g~~l 377 (382)
.+..||+++.++..+.+|.+|..||++-
T Consensus 286 DGk~l~va~~~~~~v~v~~id~~tG~l~ 313 (333)
T d1ri6a_ 286 SGKYLIAAGQKSHHISVYEIVGEQGLLH 313 (333)
T ss_dssp TSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CCCEEEEEECCCCeEEEEEEECCCCcEE
Confidence 3555899988777788999999999753
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.22 E-value=0.033 Score=49.16 Aligned_cols=106 Identities=9% Similarity=0.120 Sum_probs=59.0
Q ss_pred EEEE-EccCcEEEEEeCC-CCCeeeeec---cCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEE
Q 040693 207 IVVA-VQKSGFAWALDRD-SGSLIWSME---AGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWV 280 (382)
Q Consensus 207 ~v~~-~~~~g~l~ald~~-tG~~~W~~~---~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~ 280 (382)
.|++ .+..+.++.+|.. .|++.+... .+.. ..+ ..-+.++ .++.||++.. ..+.|+
T Consensus 189 ~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~-~~~-~pdGiavD~~GnlyVa~~----------------~~g~I~ 250 (314)
T d1pjxa_ 189 QLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT-HEG-GADGMDFDEDNNLLVANW----------------GSSHIE 250 (314)
T ss_dssp EEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC-SSC-EEEEEEEBTTCCEEEEEE----------------TTTEEE
T ss_pred EEEEEeecccceEEeeccCccccceeeEEEEcccc-ccc-cceeeEEecCCcEEEEEc----------------CCCEEE
Confidence 4444 4567788888754 344433321 1110 011 1112333 4677888743 347899
Q ss_pred EEECCCCcEEeeecCCCCCCCCcceEEeC--CEEEEeeecCCCcEEEEeCC-CCcE
Q 040693 281 AMDASNGNVLWSTADPSNGTAPGPVTVAN--GVLFGGSTYRQGPIYAMDVK-TGKI 333 (382)
Q Consensus 281 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~g~l~~ld~~-tG~i 333 (382)
.||+++|+.+=++..+.. ....+.+.. +.+|+++. .++.|+.++.. .|+.
T Consensus 251 ~~dp~~g~~~~~i~~p~~--~~t~~afg~d~~~lyVt~~-~~g~i~~~~~~~~G~~ 303 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRCPFE--KPSNLHFKPQTKTIFVTEH-ENNAVWKFEWQRNGKK 303 (314)
T ss_dssp EECTTCBSCSEEEECSSS--CEEEEEECTTSSEEEEEET-TTTEEEEEECSSCBCC
T ss_pred EEeCCCCEEEEEEECCCC--CEEEEEEeCCCCEEEEEEC-CCCcEEEEECCCCChh
Confidence 999999987766666542 223344532 36888764 46778877754 4543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.86 E-value=0.044 Score=48.83 Aligned_cols=107 Identities=14% Similarity=0.052 Sum_probs=56.8
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCC-------------CCCCcccceee--eCCeEEEEecCccccccccCC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGG-------------LGGGAMWGAAT--DERRIYTNIANSQHKNFNLKP 269 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~-------------~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~ 269 (382)
+..+++++.|+.+..+|...+............ ........... ++..++..
T Consensus 153 ~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~------------- 219 (371)
T d1k8kc_ 153 SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV------------- 219 (371)
T ss_dssp SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEE-------------
T ss_pred ccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccc-------------
Confidence 356778888999999998776544332211100 00000111111 34444443
Q ss_pred CCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceE-EeCCEEEEeeecCCCc--EEEEeCCCCc
Q 040693 270 SKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVT-VANGVLFGGSTYRQGP--IYAMDVKTGK 332 (382)
Q Consensus 270 ~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~g~--l~~ld~~tG~ 332 (382)
..++.|..+|.++++.+-+......+. ..+. ..++.++++.. ++. ++.++..+++
T Consensus 220 ----~~d~~i~iwd~~~~~~~~~~~~~~~~v--~s~~fs~d~~~la~g~--d~~~~~~~~~~~~~~ 277 (371)
T d1k8kc_ 220 ----SHDSTVCLADADKKMAVATLASETLPL--LAVTFITESSLVAAGH--DCFPVLFTYDSAAGK 277 (371)
T ss_dssp ----ETTTEEEEEEGGGTTEEEEEECSSCCE--EEEEEEETTEEEEEET--TSSCEEEEEETTTTE
T ss_pred ----ccCCcceEEeeecccceeeeecccccc--eeeeecCCCCEEEEEc--CCceEEEEeeCCCce
Confidence 345889999999999888876544221 1222 24566665543 554 4445544443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.84 E-value=0.077 Score=46.66 Aligned_cols=147 Identities=11% Similarity=0.027 Sum_probs=76.0
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEee
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWS 292 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~ 292 (382)
.+.++.+|..++++......... ..... ...+ .++.+|++...... ....+.++.+++..+...-.
T Consensus 106 ~~~i~~~~~~~~~~~~~~~~~~~--~~~~n-d~~~d~~G~l~vtd~~~~~----------~~~~g~v~~~~~dg~~~~~~ 172 (319)
T d2dg1a1 106 TGGIFAATENGDNLQDIIEDLST--AYCID-DMVFDSKGGFYFTDFRGYS----------TNPLGGVYYVSPDFRTVTPI 172 (319)
T ss_dssp CCEEEEECTTSCSCEEEECSSSS--CCCEE-EEEECTTSCEEEEECCCBT----------TBCCEEEEEECTTSCCEEEE
T ss_pred ceeEEEEcCCCceeeeeccCCCc--ccCCc-ceeEEeccceeeccccccc----------ccCcceeEEEecccceeEEE
Confidence 45688899887776655443211 01111 1122 45678887433110 12346788888765543221
Q ss_pred -ecCCCCCCCCcceEE--eCCEEEEeeecCCCcEEEEeCC-CCcEeEEEecC-----C--ceecceEE-eCCEEEEEeCc
Q 040693 293 -TADPSNGTAPGPVTV--ANGVLFGGSTYRQGPIYAMDVK-TGKILWSYDTG-----A--TIYGGASV-SNGCIYMGNGY 360 (382)
Q Consensus 293 -~~~~~~~~~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~-tG~ilw~~~~~-----~--~~~~~p~~-~~g~lyv~~~~ 360 (382)
..+.. ..-+.+ +++.+|++.. ..++|+.+|.+ +|......... . ..--..++ .+|+|||+...
T Consensus 173 ~~~~~~----pnGia~s~dg~~lyvad~-~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~ 247 (319)
T d2dg1a1 173 IQNISV----ANGIALSTDEKVLWVTET-TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG 247 (319)
T ss_dssp EEEESS----EEEEEECTTSSEEEEEEG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET
T ss_pred eeccce----eeeeeeccccceEEEecc-cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC
Confidence 12211 112334 3457888764 57889999865 34443332111 0 01112333 57899998754
Q ss_pred eeEeecCCccCCCCCeEEEEE
Q 040693 361 KVTVGFGNKNFTSGTSLYAFC 381 (382)
Q Consensus 361 g~~~~~~~~~~~~g~~l~~~~ 381 (382)
+.. +..+++ .|+.|-...
T Consensus 248 ~g~--V~~~~p-~G~~l~~i~ 265 (319)
T d2dg1a1 248 QGR--VLVFNK-RGYPIGQIL 265 (319)
T ss_dssp TTE--EEEECT-TSCEEEEEE
T ss_pred CCE--EEEECC-CCcEEEEEe
Confidence 332 345665 688876554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.78 E-value=0.04 Score=47.93 Aligned_cols=165 Identities=10% Similarity=0.033 Sum_probs=86.7
Q ss_pred ceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEccCc-EEEEEe
Q 040693 143 NSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQKSG-FAWALD 221 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~~g-~l~ald 221 (382)
+.|+.+|.++|+++- .... ....-....++| ..+++++..++ .++.+|
T Consensus 24 g~v~v~d~~~~~~~~---~~~~--------------------------~~v~~~~~spDg--~~l~~~~~~~g~~v~v~d 72 (360)
T d1k32a3 24 GQAFIQDVSGTYVLK---VPEP--------------------------LRIRYVRRGGDT--KVAFIHGTREGDFLGIYD 72 (360)
T ss_dssp TEEEEECTTSSBEEE---CSCC--------------------------SCEEEEEECSSS--EEEEEEEETTEEEEEEEE
T ss_pred CeEEEEECCCCcEEE---ccCC--------------------------CCEEEEEECCCC--CEEEEEEcCCCCEEEEEE
Confidence 789999998877653 2211 111222234444 34445555444 788999
Q ss_pred CCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCC
Q 040693 222 RDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNG 299 (382)
Q Consensus 222 ~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~ 299 (382)
.++|+..-..... .......+ ++..+... ...+.++.++..+++..-........
T Consensus 73 ~~~~~~~~~~~~~------~~v~~~~~spdg~~l~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (360)
T d1k32a3 73 YRTGKAEKFEENL------GNVFAMGVDRNGKFAVVA-----------------NDRFEIMTVDLETGKPTVIERSREAM 129 (360)
T ss_dssp TTTCCEEECCCCC------CSEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECSSSC
T ss_pred CCCCcEEEeeCCC------ceEEeeeeccccccccee-----------------ccccccccccccccceeeeeeccccc
Confidence 9998866332211 12222222 55666665 34577999999999877666554322
Q ss_pred CCCcceEEeCCEEEEeee--------cCCCcEEEEeCCCCcEeEEEecCCceecceEE--eCCEEEEEeCcee
Q 040693 300 TAPGPVTVANGVLFGGST--------YRQGPIYAMDVKTGKILWSYDTGATIYGGASV--SNGCIYMGNGYKV 362 (382)
Q Consensus 300 ~~~~~~~~~~~~v~~~~~--------~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~--~~g~lyv~~~~g~ 362 (382)
.......-++.++..... ...+.++.+|.++++............ .+.+ .+..|+..+.++.
T Consensus 130 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~s~~~~ 201 (360)
T d1k32a3 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY-APAFDADSKNLYYLSYRSL 201 (360)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEE-EEEECTTSCEEEEEESCCC
T ss_pred ccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccc-cccccCCCCEEEEEeCCCc
Confidence 112211112344443321 123458889999887765444333222 2222 3345555554433
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=96.75 E-value=0.11 Score=48.13 Aligned_cols=109 Identities=8% Similarity=0.021 Sum_probs=60.4
Q ss_pred EEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCcccccc---------------------ccCCCC--C
Q 040693 216 FAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNF---------------------NLKPSK--N 272 (382)
Q Consensus 216 ~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~--~ 272 (382)
.+.++|.++.++.|+...+.. ........+++.+|++..+...... .+.|.. .
T Consensus 157 ~~~~iD~~t~~v~~qI~v~~~----p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~ 232 (441)
T d1qnia2 157 MFTAIDAETMDVAWQVIVDGN----LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK 232 (441)
T ss_dssp EEEEEETTTCSEEEEEEESSC----CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred eEEeecCccceeeEEEecCCC----ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence 467899999999999987542 1111222277888887655321100 001111 0
Q ss_pred CCCCceEEEEEC-CCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCC
Q 040693 273 STIAGGWVAMDA-SNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKT 330 (382)
Q Consensus 273 ~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~t 330 (382)
......+..+|. ++.+.+-.++.+.. .....+.-++.++|++.. .++.+.++|.++
T Consensus 233 ~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~-~~~tvsv~d~~k 289 (441)
T d1qnia2 233 TIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGK-LSPTVSVIAIDK 289 (441)
T ss_dssp CCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECT-TSSBEEEEEGGG
T ss_pred EeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCC-cCCcEEEEEeeh
Confidence 111234555664 44456666676653 233333334567777653 578999999764
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.72 E-value=0.13 Score=43.09 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=36.5
Q ss_pred eceEEEcCEEEEeccCccccccccccccccceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEE
Q 040693 25 MSGTYYKGAYYVGTSSIEEGLTFELCCTFQGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVY 104 (382)
Q Consensus 25 ~~p~v~~~~v~v~~~~~~~~~~~~~~~~~~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~ 104 (382)
.+|.+.+++|++.. ++.|+.+|+++|+.+--... +. . ...|.+.+++..|+
T Consensus 6 ~sPdi~G~~v~f~~---------------~~dl~~~d~~~g~~~~Lt~~-~~----------~---~~~p~~SPDG~~ia 56 (281)
T d1k32a2 6 LNPDIHGDRIIFVC---------------CDDLWEHDLKSGSTRKIVSN-LG----------V---INNARFFPDGRKIA 56 (281)
T ss_dssp EEEEEETTEEEEEE---------------TTEEEEEETTTCCEEEEECS-SS----------E---EEEEEECTTSSEEE
T ss_pred cCCCCCCCEEEEEe---------------CCcEEEEECCCCCEEEEecC-CC----------c---ccCEEECCCCCEEE
Confidence 47888888887765 67899999999887532221 11 0 12478888888777
Q ss_pred EEc
Q 040693 105 IAT 107 (382)
Q Consensus 105 v~~ 107 (382)
+..
T Consensus 57 f~~ 59 (281)
T d1k32a2 57 IRV 59 (281)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.45 E-value=0.24 Score=42.85 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=34.7
Q ss_pred eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeC---CEEEEeee
Q 040693 249 DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVAN---GVLFGGST 317 (382)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~---~~v~~~~~ 317 (382)
.++.|+++.. ..+.|+.||+ +|+++=++++|.. ..+.+.+.+ +.+|+.+.
T Consensus 208 ~~GnlWva~~----------------~~g~V~~~dp-~G~~~~~i~lP~~--~~T~~~FGG~d~~~LyvTta 260 (295)
T d2ghsa1 208 AEGHIWNARW----------------GEGAVDRYDT-DGNHIARYEVPGK--QTTCPAFIGPDASRLLVTSA 260 (295)
T ss_dssp TTSCEEEEEE----------------TTTEEEEECT-TCCEEEEEECSCS--BEEEEEEESTTSCEEEEEEB
T ss_pred CCCCEEeeee----------------CCCceEEecC-CCcEeeEecCCCC--ceEEEEEeCCCCCEEEEEEC
Confidence 4667888643 2477999996 6999988888753 234455643 57888864
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.027 Score=50.74 Aligned_cols=125 Identities=12% Similarity=0.013 Sum_probs=75.1
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
++.|..+|..+|+++...+...... ++.....+..+.+++.+|+.+..+.
T Consensus 204 Dg~i~iwd~~~~~~~~~~~~~~~l~-------~h~~~V~~l~~spdg~~l~sgs~D~----------------------- 253 (393)
T d1sq9a_ 204 NGTVQISELSTLRPLYNFESQHSMI-------NNSNSIRSVKFSPQGSLLAIAHDSN----------------------- 253 (393)
T ss_dssp TSEEEEEETTTTEEEEEEECCC----------CCCCCEEEEEECSSTTEEEEEEEET-----------------------
T ss_pred CCcEEEEeecccccccccccccccc-------cccceEEEcccccccceeeeecCCC-----------------------
Confidence 8999999999999998877533221 1111112345667777777765320
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
..+.|..+|.++|+.+..........-.. ....+....-.-..+.++ +..|+.+..
T Consensus 254 -------t~~~i~lwd~~~g~~~~~l~~~~~~~~~~--------------~~~~gH~~~V~~l~fspd---~~~l~S~s~ 309 (393)
T d1sq9a_ 254 -------SFGCITLYETEFGERIGSLSVPTHSSQAS--------------LGEFAHSSWVMSLSFNDS---GETLCSAGW 309 (393)
T ss_dssp -------TEEEEEEEETTTCCEEEEECBC----------------------CCBSBSSCEEEEEECSS---SSEEEEEET
T ss_pred -------Ccceeeecccccceeeeeeccccccccce--------------eeeecccCceeeeccCCC---CCeeEEECC
Confidence 11457889999999999886543210000 000011111111122233 368889999
Q ss_pred CcEEEEEeCCCCCeeeeec
Q 040693 214 SGFAWALDRDSGSLIWSME 232 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~ 232 (382)
|+.+...|.++|+.+..++
T Consensus 310 D~~v~vWd~~~g~~~~~l~ 328 (393)
T d1sq9a_ 310 DGKLRFWDVKTKERITTLN 328 (393)
T ss_dssp TSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEC
Confidence 9999999999999998876
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.42 E-value=0.039 Score=47.98 Aligned_cols=154 Identities=12% Similarity=0.035 Sum_probs=87.0
Q ss_pred cceEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCC
Q 040693 54 QGSLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPD 133 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (382)
+|.|+.+|.++|+++-. .. +..+ ..+.+.+++..+++....
T Consensus 23 ~g~v~v~d~~~~~~~~~---~~----------~~~v--~~~~~spDg~~l~~~~~~------------------------ 63 (360)
T d1k32a3 23 RGQAFIQDVSGTYVLKV---PE----------PLRI--RYVRRGGDTKVAFIHGTR------------------------ 63 (360)
T ss_dssp TTEEEEECTTSSBEEEC---SC----------CSCE--EEEEECSSSEEEEEEEET------------------------
T ss_pred CCeEEEEECCCCcEEEc---cC----------CCCE--EEEEECCCCCEEEEEEcC------------------------
Confidence 77899999988887632 10 1111 246777777777765543
Q ss_pred CCCCCCCCcceEEEEECCCCcEEEEEecCCCcccccccccCCCCCCCCCCCCCCCCCCCceEEEeeeCceeecEEEEEcc
Q 040693 134 KCIEPENHSNSLLALDLDTGKIVWYKQLGGYDVWFGACNWYLNPNCPPGPSPDADFGEAPMMLSMYRNKVKHDIVVAVQK 213 (382)
Q Consensus 134 ~~~~~~~~~g~v~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~v~~~~~ 213 (382)
....|+.+|.++|++. +..... .......+.++ +..|+++..
T Consensus 64 -------~g~~v~v~d~~~~~~~-~~~~~~---------------------------~~v~~~~~spd---g~~l~~~~~ 105 (360)
T d1k32a3 64 -------EGDFLGIYDYRTGKAE-KFEENL---------------------------GNVFAMGVDRN---GKFAVVAND 105 (360)
T ss_dssp -------TEEEEEEEETTTCCEE-ECCCCC---------------------------CSEEEEEECTT---SSEEEEEET
T ss_pred -------CCCEEEEEECCCCcEE-EeeCCC---------------------------ceEEeeeeccc---ccccceecc
Confidence 0246888999888765 221111 11112223333 357788888
Q ss_pred CcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEe
Q 040693 214 SGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLW 291 (382)
Q Consensus 214 ~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W 291 (382)
++.++.++.++++..-....... ....... ++..+........ ... .....+.++.+|.++++...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~spdg~~la~~~~~~~-~~~------~~~~~~~~~v~d~~~~~~~~ 173 (360)
T d1k32a3 106 RFEIMTVDLETGKPTVIERSREA-----MITDFTISDNSRFIAYGFPLKH-GET------DGYVMQAIHVYDMEGRKIFA 173 (360)
T ss_dssp TSEEEEEETTTCCEEEEEECSSS-----CCCCEEECTTSCEEEEEEEECS-STT------CSCCEEEEEEEETTTTEEEE
T ss_pred ccccccccccccceeeeeecccc-----cccchhhccceeeeeeeccccc-cce------eeccccceeeeccccCceee
Confidence 99999999999987666554321 1111222 4555544322211 000 01234568889999998876
Q ss_pred eecCC
Q 040693 292 STADP 296 (382)
Q Consensus 292 ~~~~~ 296 (382)
.....
T Consensus 174 ~~~~~ 178 (360)
T d1k32a3 174 ATTEN 178 (360)
T ss_dssp CSCSS
T ss_pred ecccc
Confidence 65543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.17 Score=42.69 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=34.5
Q ss_pred CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc-eecceEEeCCEEEEEeCcee
Q 040693 309 NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT-IYGGASVSNGCIYMGNGYKV 362 (382)
Q Consensus 309 ~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~-~~~~p~~~~g~lyv~~~~g~ 362 (382)
+++++.++ .+|.|...|.++++.+.++..... ...+....++.|.++++++.
T Consensus 263 ~~~lasg~--~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~ 315 (342)
T d1yfqa_ 263 HKFLYTAG--SDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDT 315 (342)
T ss_dssp TCCEEEEE--TTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTH
T ss_pred ccEEEEEC--CCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCc
Confidence 34555555 589999999999999988754332 22333445677777776654
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.22 Score=41.74 Aligned_cols=24 Identities=17% Similarity=0.070 Sum_probs=20.3
Q ss_pred ecEEEEEccCcEEEEEeCCCCCee
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLI 228 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~ 228 (382)
+..++++..++.+..+|..+++..
T Consensus 174 ~~~l~~g~~dg~i~i~d~~~~~~~ 197 (287)
T d1pgua2 174 ETYIAAGDVMGKILLYDLQSREVK 197 (287)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEE
T ss_pred ccccccccccccccceeecccccc
Confidence 367888889999999999998764
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=96.27 E-value=0.22 Score=41.92 Aligned_cols=103 Identities=9% Similarity=0.021 Sum_probs=55.7
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+..+++++.++.+..+|..+++..-....-.. .......... ++..++.+ ..++.|..+
T Consensus 191 ~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s~~~~~l~sg-----------------s~dg~i~iw 251 (299)
T d1nr0a2 191 GAFLVATDQSRKVIPYSVANNFELAHTNSWTF--HTAKVACVSWSPDNVRLATG-----------------SLDNSVIVW 251 (299)
T ss_dssp SSEEEEEETTSCEEEEEGGGTTEESCCCCCCC--CSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEE
T ss_pred cccccccccccccccccccccccccccccccc--cccccccccccccccceEEE-----------------cCCCEEEEE
Confidence 46778888899999999988876554432110 0111222222 44555554 345789999
Q ss_pred ECCCCcEEeeecCCCCC-CCCcceE-EeCCEEEEeeecCCCcEEEEeC
Q 040693 283 DASNGNVLWSTADPSNG-TAPGPVT-VANGVLFGGSTYRQGPIYAMDV 328 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~-~~~~~~~-~~~~~v~~~~~~~~g~l~~ld~ 328 (382)
|+++++..-........ .....+. .+++.++.++ .++.|...|.
T Consensus 252 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s--~D~~i~iWdl 297 (299)
T d1nr0a2 252 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAG--QDSNIKFWNV 297 (299)
T ss_dssp ETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEE--TTSCEEEEEC
T ss_pred ECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEe--CCCEEEEEec
Confidence 99888654333222111 1111112 2355666555 3677766654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.17 E-value=0.29 Score=41.10 Aligned_cols=131 Identities=13% Similarity=0.043 Sum_probs=64.9
Q ss_pred EEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceee-eCCeEEEEecCccccccccCCCCCCCCCceEEEEECC
Q 040693 207 IVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT-DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDAS 285 (382)
Q Consensus 207 ~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~ 285 (382)
+.+....+..+..++.. ++..|....... . ...+.++ .++.+|+... ..+.+..+|..
T Consensus 111 i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~--~--~p~~i~~~~~g~~~v~~~----------------~~~~i~~~d~~ 169 (260)
T d1rwia_ 111 VYVADRGNNRVVKLAAG-SKTQTVLPFTGL--N--DPDGVAVDNSGNVYVTDT----------------DNNRVVKLEAE 169 (260)
T ss_dssp EEEEEGGGTEEEEECTT-CSSCEECCCCSC--C--SCCEEEECTTCCEEEEEG----------------GGTEEEEECTT
T ss_pred eEeeccccccccccccc-cceeeeeeeccc--C--CcceeeecCCCCEeeecc----------------ccccccccccc
Confidence 33444445567777765 445555443211 1 1122222 3445676532 24678899876
Q ss_pred CCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceEE-eCCEEEEEeCcee
Q 040693 286 NGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGASV-SNGCIYMGNGYKV 362 (382)
Q Consensus 286 tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~~-~~g~lyv~~~~g~ 362 (382)
. ..++....... .....+.++ ++.+|++.. ..++|+.+++..+.. ....... ..-...++ .+|.|||+.....
T Consensus 170 ~-~~~~~~~~~~~-~~p~gi~~d~~g~l~vsd~-~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~ 245 (260)
T d1rwia_ 170 S-NNQVVLPFTDI-TAPWGIAVDEAGTVYVTEH-NTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGND 245 (260)
T ss_dssp T-CCEEECCCSSC-CSEEEEEECTTCCEEEEET-TTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGT
T ss_pred c-ceeeeeecccc-CCCccceeeeeeeeeeeec-CCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCC
Confidence 4 33444332211 111224454 467888774 567899998764432 2221111 01112233 3679999976543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=96.12 E-value=0.15 Score=44.03 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=50.4
Q ss_pred eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEE-eeecCC-CCCCC------CcceEEeCCEEEEeeecCC
Q 040693 249 DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVL-WSTADP-SNGTA------PGPVTVANGVLFGGSTYRQ 320 (382)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~-W~~~~~-~~~~~------~~~~~~~~~~v~~~~~~~~ 320 (382)
.++.+|+... ..+.++.+|+.++... |..... ..... ..-+..+++.+|+... ..
T Consensus 122 ~~g~~~v~~~----------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l~~~~~-~~ 184 (302)
T d2p4oa1 122 SDTQYLTADS----------------YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT-EK 184 (302)
T ss_dssp SSSEEEEEET----------------TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET-TT
T ss_pred cCCCEEeecc----------------ccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCceeeecC-CC
Confidence 4677887632 3477899999888643 332211 10001 1123345667777654 57
Q ss_pred CcEEEEeCCCCcEeEEEe--cCCceecceEE-eCCEEEEEeCce
Q 040693 321 GPIYAMDVKTGKILWSYD--TGATIYGGASV-SNGCIYMGNGYK 361 (382)
Q Consensus 321 g~l~~ld~~tG~ilw~~~--~~~~~~~~p~~-~~g~lyv~~~~g 361 (382)
+.|+.++.+....+-... ......-..++ .+|+||++...+
T Consensus 185 ~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~ 228 (302)
T d2p4oa1 185 MLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIY 228 (302)
T ss_dssp TEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTT
T ss_pred CeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCC
Confidence 888888876543222111 11111223334 467888876433
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=95.95 E-value=0.13 Score=47.49 Aligned_cols=168 Identities=8% Similarity=-0.140 Sum_probs=85.2
Q ss_pred cceEEEEECCCCcEEEEEecCCCccc-ccccccCCCCCCCCCCCCCCCCCCCceEEEe--eeCceeecEEEE-EccCcEE
Q 040693 142 SNSLLALDLDTGKIVWYKQLGGYDVW-FGACNWYLNPNCPPGPSPDADFGEAPMMLSM--YRNKVKHDIVVA-VQKSGFA 217 (382)
Q Consensus 142 ~g~v~ald~~tG~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~~~g~~~~~v~~-~~~~g~l 217 (382)
+|.|..+|..+++++.+...-..+-+ .|+.......+.........+..--|.+... ..|| ..+++ ...+..|
T Consensus 20 sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDG---r~lfV~d~~~~rV 96 (441)
T d1qnia2 20 QGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDG---KYLFINDKANTRV 96 (441)
T ss_dssp TCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEE---EEEEEEETTTTEE
T ss_pred CCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCC---CEEEEEcCCCCEE
Confidence 59999999999999999865322111 0110000000000000000011112444332 2233 34544 4567899
Q ss_pred EEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCcccccccc--CCCCCCCCCceEEEEECCCCcEEeee
Q 040693 218 WALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNL--KPSKNSTIAGGWVAMDASNGNVLWST 293 (382)
Q Consensus 218 ~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~--~~~~~~~~~g~v~a~d~~tG~~~W~~ 293 (382)
..+|.+|++..-..+.+. +....+... +++.+|+.......-.+.- ...........+.++|..+.+..|+.
T Consensus 97 avIDl~t~k~~~ii~iP~----g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI 172 (441)
T d1qnia2 97 ARIRLDIMKTDKITHIPN----VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV 172 (441)
T ss_dssp EEEETTTTEEEEEEECTT----CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred EEEECCCCcEeeEEecCC----CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence 999999998877666432 112232222 6677776543321111100 00000112245789999999999999
Q ss_pred cCCCCCCCCcceEEeCCEEEEeee
Q 040693 294 ADPSNGTAPGPVTVANGVLFGGST 317 (382)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~v~~~~~ 317 (382)
..+... .......+++.+|+++.
T Consensus 173 ~v~~~p-~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 173 IVDGNL-DNTDADYTGKYATSTCY 195 (441)
T ss_dssp EESSCC-CCEEECSSSSEEEEEES
T ss_pred ecCCCc-cceEECCCCCEEEEEec
Confidence 887632 22333335678887763
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.48 E-value=0.6 Score=39.48 Aligned_cols=72 Identities=6% Similarity=-0.082 Sum_probs=45.7
Q ss_pred ceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCceecceEEeCCEEEEEeCceeEeecCCccCCCCCeEEE
Q 040693 304 PVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGATIYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTSLYA 379 (382)
Q Consensus 304 ~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~l~~ 379 (382)
.+.++ ++++|++.. ..+.|..+|.+.+...--.. +-..-.+.++.+++||+++.... .++.+|..+|+.+-.
T Consensus 171 glaiD~~~~~lYw~d~-~~~~I~~~~~~g~~~~~v~~-~~~~P~~lav~~~~lYwtd~~~~--~I~~~~~~~g~~~~~ 244 (263)
T d1npea_ 171 GLTFDAFSSQLCWVDA-GTHRAECLNPAQPGRRKVLE-GLQYPFAVTSYGKNLYYTDWKTN--SVIAMDLAISKEMDT 244 (263)
T ss_dssp EEEEETTTTEEEEEET-TTTEEEEEETTEEEEEEEEE-CCCSEEEEEEETTEEEEEETTTT--EEEEEETTTTEEEEE
T ss_pred eEEEeecCcEEEEEeC-CCCEEEEEECCCCCeEEEEC-CCCCcEEEEEECCEEEEEECCCC--EEEEEECCCCccceE
Confidence 45555 678988864 46789999987443322221 11222356678999999986533 256678778876643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.62 Score=39.37 Aligned_cols=42 Identities=7% Similarity=0.046 Sum_probs=26.5
Q ss_pred cceEEEEeCccCceee---eeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCC
Q 040693 54 QGSLAKLDAKTGRILW---QTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGN 109 (382)
Q Consensus 54 ~g~l~ald~~tG~~lW---~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~ 109 (382)
++.|+.+|..+...+- +.+..... ...++.+++..||++...
T Consensus 13 ~~~I~v~~~~~~~~l~~~~~~~~~~~v--------------~~la~spDG~~L~v~~~~ 57 (333)
T d1ri6a_ 13 SQQIHVWNLNHEGALTLTQVVDVPGQV--------------QPMVVSPDKRYLYVGVRP 57 (333)
T ss_dssp GTEEEEEEECTTSCEEEEEEEECSSCC--------------CCEEECTTSSEEEEEETT
T ss_pred CCcEEEEEEcCCCCeEEEEEEcCCCCE--------------eEEEEeCCCCEEEEEECC
Confidence 7788888876544333 33332111 246789998899987653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.21 E-value=0.095 Score=46.91 Aligned_cols=118 Identities=10% Similarity=0.105 Sum_probs=73.8
Q ss_pred cEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCC-CCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLG-GGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~-g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
+.|.++..|+.+..+|..+|+.+..++....... ........+ ++..|+.+..+ ...+.+..+
T Consensus 196 g~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D--------------~t~~~i~lw 261 (393)
T d1sq9a_ 196 GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS--------------NSFGCITLY 261 (393)
T ss_dssp SEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEE--------------TTEEEEEEE
T ss_pred CEEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCC--------------CCcceeeec
Confidence 4788899999999999999999988775432110 111222222 45555554321 112457889
Q ss_pred ECCCCcEEeeecCCCCCC-----------CCcceEE--eCCEEEEeeecCCCcEEEEeCCCCcEeEEEec
Q 040693 283 DASNGNVLWSTADPSNGT-----------APGPVTV--ANGVLFGGSTYRQGPIYAMDVKTGKILWSYDT 339 (382)
Q Consensus 283 d~~tG~~~W~~~~~~~~~-----------~~~~~~~--~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~ 339 (382)
|+++|+.+.+........ ....+.+ ++.+++.++ .++.|...|.++|+.+..++-
T Consensus 262 d~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s--~D~~v~vWd~~~g~~~~~l~g 329 (393)
T d1sq9a_ 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG--WDGKLRFWDVKTKERITTLNM 329 (393)
T ss_dssp ETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE--TTSEEEEEETTTTEEEEEEEC
T ss_pred ccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC--CCCEEEEEECCCCCEEEEECC
Confidence 999999998876432110 0111222 334565555 599999999999999998863
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.82 Score=37.87 Aligned_cols=138 Identities=9% Similarity=-0.020 Sum_probs=70.2
Q ss_pred cEEEEEccC-cEEEEEeCCCCCeeeeeccCCCCCCCCcccceee--eCCeEEEEecCccccccccCCCCCCCCCceEEEE
Q 040693 206 DIVVAVQKS-GFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAAT--DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAM 282 (382)
Q Consensus 206 ~~v~~~~~~-g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~ 282 (382)
..++++..+ +.+..++..+.+.......... ........ ++..++++ ..++.|..+
T Consensus 131 ~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~v~~~~~s~~~~~l~~g-----------------~~dg~i~i~ 189 (287)
T d1pgua2 131 NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLR----AKPSYISISPSETYIAAG-----------------DVMGKILLY 189 (287)
T ss_dssp SEEEEEETTTSCEEEEETTEEEEEEECSSCCS----SCEEEEEECTTSSEEEEE-----------------ETTSCEEEE
T ss_pred cceeeeccccceeeeeeccccceeeeeeeccC----CceeEEEeccCccccccc-----------------cccccccce
Confidence 445555544 4577778776665555443211 11122222 45556665 345789999
Q ss_pred ECCCCcEEeeec-CCCCCC--------CC--cceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEEecCC-ceecceE-E
Q 040693 283 DASNGNVLWSTA-DPSNGT--------AP--GPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGA-TIYGGAS-V 349 (382)
Q Consensus 283 d~~tG~~~W~~~-~~~~~~--------~~--~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~-~~~~~p~-~ 349 (382)
|..+++..-... ...... .. .....++.++..++ .++.|+..|.+++..+.+...+. ....... .
T Consensus 190 d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs--~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~ 267 (287)
T d1pgua2 190 DLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGS--LDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 267 (287)
T ss_dssp ETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEE--TTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred eecccccccccccccccccceeeecccccccccccCCCCeeEeec--CCCeEEEEECCCCCeEEEEeCCCCCCeEEEEEC
Confidence 999997653321 111000 00 00011234555555 58999999988755544443322 2223333 3
Q ss_pred eCCEEEEEeCceeEeecC
Q 040693 350 SNGCIYMGNGYKVTVGFG 367 (382)
Q Consensus 350 ~~g~lyv~~~~g~~~~~~ 367 (382)
.+++++.++.+|. +.+|
T Consensus 268 ~~~~l~s~g~D~~-v~iW 284 (287)
T d1pgua2 268 TPSTLVSSGADAC-IKRW 284 (287)
T ss_dssp ETTEEEEEETTSC-EEEE
T ss_pred CCCEEEEEECCCe-EEEE
Confidence 5677666666654 4443
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.4 Score=40.17 Aligned_cols=110 Identities=8% Similarity=-0.045 Sum_probs=60.8
Q ss_pred ecEEEEEccCcEEEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEEC
Q 040693 205 HDIVVAVQKSGFAWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDA 284 (382)
Q Consensus 205 ~~~v~~~~~~g~l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~ 284 (382)
+..|++++.|+.+..++..++............ .............++.. ...+.+..+|+
T Consensus 69 ~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----------------~~~~~~~~wd~ 129 (342)
T d1yfqa_ 69 DLQIYVGTVQGEILKVDLIGSPSFQALTNNEAN--LGICRICKYGDDKLIAA-----------------SWDGLIEVIDP 129 (342)
T ss_dssp SEEEEEEETTSCEEEECSSSSSSEEECBSCCCC--SCEEEEEEETTTEEEEE-----------------ETTSEEEEECH
T ss_pred CCEEEEcccccceeeeecccccccccccccccc--ccccccccccccccccc-----------------ccccccceeec
Confidence 457888889999999999988777666543211 00111111133444443 23466777787
Q ss_pred CCCcEEeeecC--CC--CCCCCc--ceEEeCCEEEEeeecCCCcEEEEeCCCCcEeE
Q 040693 285 SNGNVLWSTAD--PS--NGTAPG--PVTVANGVLFGGSTYRQGPIYAMDVKTGKILW 335 (382)
Q Consensus 285 ~tG~~~W~~~~--~~--~~~~~~--~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw 335 (382)
++++....... .. ...... .+...++.++.++. ++.+..+|..+++...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~~~~~~~~~~~~ 184 (342)
T d1yfqa_ 130 RNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMN--NSQVQWFRLPLCEDDN 184 (342)
T ss_dssp HHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEES--TTEEEEEESSCCTTCC
T ss_pred cccccceeeecccccccccceeeeeeeeccCCceeeecC--CCcEEEEecccCcccc
Confidence 66644433321 11 001111 12234566666664 8999999988765543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.18 E-value=1.3 Score=36.85 Aligned_cols=81 Identities=14% Similarity=0.136 Sum_probs=41.1
Q ss_pred ceEEEEECCCCcEEeeecCCCCCCCCcceEEe-CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc-eecceEE-eCCE
Q 040693 277 GGWVAMDASNGNVLWSTADPSNGTAPGPVTVA-NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT-IYGGASV-SNGC 353 (382)
Q Consensus 277 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~-~~~~p~~-~~g~ 353 (382)
..+..++..+ +..|....... .....+.++ ++.+|++.. ..++|+.+|.+. ..++....... .-...++ .+|+
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~-~~p~~i~~~~~g~~~v~~~-~~~~i~~~d~~~-~~~~~~~~~~~~~p~gi~~d~~g~ 194 (260)
T d1rwia_ 119 NRVVKLAAGS-KTQTVLPFTGL-NDPDGVAVDNSGNVYVTDT-DNNRVVKLEAES-NNQVVLPFTDITAPWGIAVDEAGT 194 (260)
T ss_dssp TEEEEECTTC-SSCEECCCCSC-CSCCEEEECTTCCEEEEEG-GGTEEEEECTTT-CCEEECCCSSCCSEEEEEECTTCC
T ss_pred cccccccccc-ceeeeeeeccc-CCcceeeecCCCCEeeecc-cccccccccccc-ceeeeeeccccCCCccceeeeeee
Confidence 4466666544 44444433221 112233443 456677653 467899999773 33333322211 1122233 4678
Q ss_pred EEEEeCce
Q 040693 354 IYMGNGYK 361 (382)
Q Consensus 354 lyv~~~~g 361 (382)
||++....
T Consensus 195 l~vsd~~~ 202 (260)
T d1rwia_ 195 VYVTEHNT 202 (260)
T ss_dssp EEEEETTT
T ss_pred eeeeecCC
Confidence 99987643
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=93.67 E-value=2.1 Score=37.58 Aligned_cols=73 Identities=12% Similarity=-0.002 Sum_probs=40.8
Q ss_pred CCEEEEeeecC----CCcEEEEeCC-CCcEeEEEec-----CCceecceEE---eCCEEEEEeCceeEeecCCccCCCCC
Q 040693 309 NGVLFGGSTYR----QGPIYAMDVK-TGKILWSYDT-----GATIYGGASV---SNGCIYMGNGYKVTVGFGNKNFTSGT 375 (382)
Q Consensus 309 ~~~v~~~~~~~----~g~l~~ld~~-tG~ilw~~~~-----~~~~~~~p~~---~~g~lyv~~~~g~~~~~~~~~~~~g~ 375 (382)
+..+|++..+. ...|..++.. +|.+...... .+..-....+ .+..|||++.....+.+|+++.++++
T Consensus 266 G~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~l~ 345 (365)
T d1jofa_ 266 GKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEFLH 345 (365)
T ss_dssp SSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTEEE
T ss_pred CCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCcCc
Confidence 45788775311 2236555543 4554333221 1112222333 24569999888788888998888776
Q ss_pred eEEEEE
Q 040693 376 SLYAFC 381 (382)
Q Consensus 376 ~l~~~~ 381 (382)
.+-..+
T Consensus 346 ~~~~~~ 351 (365)
T d1jofa_ 346 RVARVR 351 (365)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 665543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.61 E-value=1.7 Score=36.45 Aligned_cols=70 Identities=14% Similarity=0.117 Sum_probs=41.5
Q ss_pred ceEEe--CCEEEEeeecCCCcEEEEeCCCCcEeEEEecCCc--eecceEEeCCEEEEEeCceeEeecCCccCCCCCe
Q 040693 304 PVTVA--NGVLFGGSTYRQGPIYAMDVKTGKILWSYDTGAT--IYGGASVSNGCIYMGNGYKVTVGFGNKNFTSGTS 376 (382)
Q Consensus 304 ~~~~~--~~~v~~~~~~~~g~l~~ld~~tG~ilw~~~~~~~--~~~~p~~~~g~lyv~~~~g~~~~~~~~~~~~g~~ 376 (382)
.++++ ++++|.+.. ..+.|..+|.+.....--...... .-.+.++.++.||+++.... .++.++..+|+.
T Consensus 168 gl~iD~~~~~lYw~d~-~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~--~I~~~~~~~g~~ 241 (266)
T d1ijqa1 168 GITLDLLSGRLYWVDS-KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINE--AIFSANRLTGSD 241 (266)
T ss_dssp EEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTT--EEEEEETTTCCC
T ss_pred EEEeeccccEEEEecC-CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCC--eEEEEECCCCcc
Confidence 45555 678998864 567899999864332211111111 12245678999999975433 245566666653
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.54 E-value=4.9 Score=33.38 Aligned_cols=58 Identities=14% Similarity=0.069 Sum_probs=39.1
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEeEEE
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKILWSY 337 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~ilw~~ 337 (382)
.+.|..+|...+...-...... ....+.+.++.+|+++. ..+.|+.+|..+|+.+-.+
T Consensus 188 ~~~I~~~~~~g~~~~~v~~~~~---~P~~lav~~~~lYwtd~-~~~~I~~~~~~~g~~~~~~ 245 (263)
T d1npea_ 188 THRAECLNPAQPGRRKVLEGLQ---YPFAVTSYGKNLYYTDW-KTNSVIAMDLAISKEMDTF 245 (263)
T ss_dssp TTEEEEEETTEEEEEEEEECCC---SEEEEEEETTEEEEEET-TTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEEECCCCCeEEEECCCC---CcEEEEEECCEEEEEEC-CCCEEEEEECCCCccceEE
Confidence 4678888886554433332211 11245667999999875 5789999999999887544
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=88.85 E-value=6.4 Score=33.78 Aligned_cols=57 Identities=16% Similarity=0.183 Sum_probs=30.2
Q ss_pred CcceEEeCCEEEEeeecC----------CCcEEEEeCCCCcEeEEEecCC---ceecceE--EeCCEEEEEeCc
Q 040693 302 PGPVTVANGVLFGGSTYR----------QGPIYAMDVKTGKILWSYDTGA---TIYGGAS--VSNGCIYMGNGY 360 (382)
Q Consensus 302 ~~~~~~~~~~v~~~~~~~----------~g~l~~ld~~tG~ilw~~~~~~---~~~~~p~--~~~g~lyv~~~~ 360 (382)
...+.+.++.||+..... ...+.++|+++. .|+.-.+. ....+.+ ..||++||..+.
T Consensus 292 ~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~--~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~ 363 (387)
T d1k3ia3 292 HTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD--TFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 363 (387)
T ss_dssp CEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT--EEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCC--eEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence 344445566666643210 113667898765 57553221 1222333 358999998763
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.40 E-value=6.9 Score=32.43 Aligned_cols=73 Identities=16% Similarity=0.095 Sum_probs=44.8
Q ss_pred eCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeC
Q 040693 249 DERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDV 328 (382)
Q Consensus 249 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~ 328 (382)
.++.||.... ..+.|..+|.......=-..........-.+.+.++.+|.+.. ..+.|+.+|.
T Consensus 174 ~~~~lYw~d~----------------~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~-~~~~I~~~~~ 236 (266)
T d1ijqa1 174 LSGRLYWVDS----------------KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDI-INEAIFSANR 236 (266)
T ss_dssp TTTEEEEEET----------------TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEET-TTTEEEEEET
T ss_pred cccEEEEecC----------------CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEEC-CCCeEEEEEC
Confidence 3677888632 2467888888544322112221111111235677899999874 5789999999
Q ss_pred CCCcEeEEEe
Q 040693 329 KTGKILWSYD 338 (382)
Q Consensus 329 ~tG~ilw~~~ 338 (382)
.+|+..-...
T Consensus 237 ~~g~~~~~~~ 246 (266)
T d1ijqa1 237 LTGSDVNLLA 246 (266)
T ss_dssp TTCCCCEEEE
T ss_pred CCCcceEEEE
Confidence 9987665544
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.81 E-value=7 Score=31.92 Aligned_cols=127 Identities=16% Similarity=0.104 Sum_probs=64.3
Q ss_pred EEEEeCCCCCeeeeeccCCCCCCCCcccceeeeCCeEEEEecCccccccccCCCCCCCCCceEEEEECCCCcEEeeecCC
Q 040693 217 AWALDRDSGSLIWSMEAGPGGLGGGAMWGAATDERRIYTNIANSQHKNFNLKPSKNSTIAGGWVAMDASNGNVLWSTADP 296 (382)
Q Consensus 217 l~ald~~tG~~~W~~~~~~~~~~g~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~v~a~d~~tG~~~W~~~~~ 296 (382)
...+|..+. .|....... ............+.+++...... ......+..+|+.+++.......+
T Consensus 119 ~~~~~~~~~--~~~~~~~~~--~~r~~~~~~~~~~~~~~~GG~~~-----------~~~~~~~~~~d~~~~~~~~~~~~~ 183 (288)
T d1zgka1 119 VERYEPERD--EWHLVAPML--TRRIGVGVAVLNRLLYAVGGFDG-----------TNRLNSAECYYPERNEWRMITAMN 183 (288)
T ss_dssp EEEEETTTT--EEEECCCCS--SCCBSCEEEEETTEEEEECCBCS-----------SCBCCCEEEEETTTTEEEECCCCS
T ss_pred eeeeccccC--ccccccccc--cccccceeeeeeecceEecCccc-----------ccccceEEEeeccccccccccccc
Confidence 455676653 566544332 11222233335666666432211 123356899999876543322222
Q ss_pred CCCCCCcceEEeCCEEEEeeec----CCCcEEEEeCCCCcEeEEEecCCc-eecceEEeCCEEEEEeC
Q 040693 297 SNGTAPGPVTVANGVLFGGSTY----RQGPIYAMDVKTGKILWSYDTGAT-IYGGASVSNGCIYMGNG 359 (382)
Q Consensus 297 ~~~~~~~~~~~~~~~v~~~~~~----~~g~l~~ld~~tG~ilw~~~~~~~-~~~~p~~~~g~lyv~~~ 359 (382)
. ..........++.+++.... ....++.+|..+.+.....+.+.. ...+.++.+++|||..+
T Consensus 184 ~-~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG 250 (288)
T d1zgka1 184 T-IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG 250 (288)
T ss_dssp S-CCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred c-ccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEec
Confidence 2 22333444566766665320 123577888776543222223322 33455668999999865
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=85.16 E-value=8 Score=31.06 Aligned_cols=54 Identities=19% Similarity=0.178 Sum_probs=35.3
Q ss_pred CceEEEEECCCCcEEeeecCCCCCCCCcceEEeCCEEEEeeecCCCcEEEEeCCCCcEe
Q 040693 276 AGGWVAMDASNGNVLWSTADPSNGTAPGPVTVANGVLFGGSTYRQGPIYAMDVKTGKIL 334 (382)
Q Consensus 276 ~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~ld~~tG~il 334 (382)
...|+.+|+.+++..-.+.... .....+..++..|+... ++.||.+|+++|+..
T Consensus 213 ~~~l~~~d~~g~~~~~lt~~~~--~~~~~~SpDG~~I~f~~---~~~l~~~d~~~g~~~ 266 (281)
T d1k32a2 213 FGQIYSTDLDGKDLRKHTSFTD--YYPRHLNTDGRRILFSK---GGSIYIFNPDTEKIE 266 (281)
T ss_dssp SCEEEEEETTSCSCEECCCCCS--SCEEEEEESSSCEEEEE---TTEEEEECTTTCCEE
T ss_pred ccceEEEeCCCCceEEeecCCC--cccccCcCCCCEEEEEe---CCEEEEEECCCCCEE
Confidence 4569999998887665444322 12223444566666555 789999999988854
|
| >d1dlpa2 b.78.1.1 (A:116-235) Fetuin-binding protein Scafet precursor {Bluebell (Scilla campanulata) [TaxId: 81759]} | Back information, alignment and structure |
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class: All beta proteins fold: beta-Prism II superfamily: alpha-D-mannose-specific plant lectins family: alpha-D-mannose-specific plant lectins domain: Fetuin-binding protein Scafet precursor species: Bluebell (Scilla campanulata) [TaxId: 81759]
Probab=82.72 E-value=5.2 Score=29.03 Aligned_cols=18 Identities=17% Similarity=0.176 Sum_probs=14.7
Q ss_pred ceEEEEECCCCcEEEEEec
Q 040693 143 NSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 143 g~v~ald~~tG~~~W~~~~ 161 (382)
|.|+..|. +++.+|+-..
T Consensus 76 GnLvl~d~-~~~~lW~S~t 93 (120)
T d1dlpa2 76 GRMDVLTN-QNIAVWTSGN 93 (120)
T ss_dssp TEEEEEET-TTEEEEECCC
T ss_pred eeEEEEcC-CCCEEEEeCC
Confidence 78888996 6999998654
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| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=82.55 E-value=10 Score=30.31 Aligned_cols=62 Identities=18% Similarity=0.153 Sum_probs=38.0
Q ss_pred eEEEEeCccCceeeeeeccCCCCCCCCCCcCccccCCCceeeCCCCeEEEEcCCCCCCCcchhhcccccCCCCCCCCCCC
Q 040693 56 SLAKLDAKTGRILWQTFMLPDNFGKLNEYAGAAIWGSSPSIDPIRNHVYIATGNLYSVPLHIRQCQEENNQTTPTSPDKC 135 (382)
Q Consensus 56 ~l~ald~~tG~~lW~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (382)
.|+..|. +|+-.....-.+.. ..+|...+++..|.+....
T Consensus 20 ~l~i~d~-dG~~~~~l~~~~~~-------------~~sP~wSPDGk~IAf~~~~-------------------------- 59 (269)
T d2hqsa1 20 ELRVSDY-DGYNQFVVHRSPQP-------------LMSPAWSPDGSKLAYVTFE-------------------------- 59 (269)
T ss_dssp EEEEEET-TSCSCEEEEEESSC-------------EEEEEECTTSSEEEEEECT--------------------------
T ss_pred EEEEEcC-CCCCcEEEecCCCc-------------eeeeEECCCCCEEEEEEee--------------------------
Confidence 5777785 56655554322111 0258899998888776542
Q ss_pred CCCCCCcceEEEEECCCCcEEEEEec
Q 040693 136 IEPENHSNSLLALDLDTGKIVWYKQL 161 (382)
Q Consensus 136 ~~~~~~~g~v~ald~~tG~~~W~~~~ 161 (382)
.....++.++..+++.......
T Consensus 60 ----~~~~~~~~~~~~~~~~~~~~~~ 81 (269)
T d2hqsa1 60 ----SGRSALVIQTLANGAVRQVASF 81 (269)
T ss_dssp ----TSSCEEEEEETTTCCEEEEECC
T ss_pred ----ccCcceeeeecccCceeEEeee
Confidence 1235788899887777654443
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