Citrus Sinensis ID: 040713

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------
Protein Sequence
MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANIWDFDDSTADD
Secondary Structure (PSIPRED)
cccccccEEEEEcccccccccccccccccccEEEEcccccccccccccccccEEEEcccccccHHHHcccccccccccccEEEccccccccccccccccccccccccccccEEEEEccHHHHHHHcccccccccccccccEEEEccEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccHcHcccccHccccccHHEEEEcccccccccccccccccEEEEcccccHHcccccccccccccccccEEEEcccccccccccccHcccccccccccccEEEEcccHHHHHHHHcccccccccEEEccEEEEccEEEEccccccc
Coil and Loop (DISEMBL)
mpcakltrleiydckrlealpkglhnltslqelkiggelpsleedglptnlhsLWIDGNKKIWKSMIERgrgfhrfsSLRHltisgcdddmvsfppelkyfpekglpsslLQLWIWGCPLIAEKCRKDGGQYWDLlthipsvsianiwdfddstadd
Flexible Loop (DISEMBL)
mpcakltrleiydcKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHipsvsianiwdfddstadd
Low Complexity Region (SEG)
MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANIWDFDDSTADD
Disordered region (IsUnstruct)
****KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFS**********************YFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANIWDF*******
Disordered Region (DISOPRED)
MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANIWDFD**T***
Disordered Region (DISEMBL)
MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANIWDFDDSTADD
Disordered Region (DISPRO)
MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANIWDFDDS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANIWDFDDSTADD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	157	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.668	0.073	0.347	1e-06
Q7XBQ9	970	Disease resistance protei	N/A	no	0.675	0.109	0.317	1e-05
Q7XA39	988	Putative disease resistan	N/A	no	0.847	0.134	0.271	0.0003

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 63/118 (53%), Gaps = 13/118 (11%)

Query: 1    MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGLPTNLHSLWIDG 58
            +P  KL+ + + +CK+L+ALP+ L  LTSL  L I    E+ ++   G P+NL +L I  
Sbjct: 1236 LPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISL 1295

Query: 59   NKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKG-LPSSLLQLWI 115
              K+   +     G     +LR+L I G ++D+ S       FPE+G LP S+  L I
Sbjct: 1296 CDKLTPRI---EWGLRDLENLRNLEIDGGNEDIES-------FPEEGLLPKSVFSLRI 1343

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 63/145 (43%), Gaps = 39/145 (26%)

Query: 4   AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIG--GELPSLEEDGLPTNLHSLWIDGNKK 61
           A L  L I  C  L+ LP  L +L +L+ LKI     L SL E+GL              
Sbjct: 859 ANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEG------------ 906

Query: 62  IWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLP--SSLLQLWIWGCP 119
                          SSL  L +  C+         LK  PE GL   ++L  L I GCP
Sbjct: 907 --------------LSSLTELFVEHCN--------MLKCLPE-GLQHLTTLTSLKIRGCP 943

Query: 120 LIAEKCRKDGGQYWDLLTHIPSVSI 144
            + ++C K  G+ W  ++HIP+V+I
Sbjct: 944 QLIKRCEKGIGEDWHKISHIPNVNI 968

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 33/166 (19%)

Query: 4   AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGEL--PSLEEDGLP--TNLHSL-WIDG 58
           + + +LE++       L   + NL++L  L+IG      SL E+     TNL  L + D 
Sbjct: 830 SSVKKLEVHGNTNTRGLS-SISNLSTLTSLRIGANYRATSLPEEMFTSLTNLEFLSFFD- 887

Query: 59  NKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE------------------LKY 100
               +K++ +        ++L+ L I  CD  + SFP +                  LK 
Sbjct: 888 ----FKNLKDLPTSLTSLNALKRLQIESCDS-LESFPEQGLEGLTSLTQLFVKYCKMLKC 942

Query: 101 FPEKGLP--SSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSI 144
            PE GL   ++L  L + GCP + ++C K+ G+ W  + HIP++ I
Sbjct: 943 LPE-GLQHLTALTNLGVSGCPEVEKRCDKEIGEDWHKIAHIPNLDI 987

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
356554923	1399	PREDICTED: putative disease resistance R	0.936	0.105	0.320	6e-17
400131587	1388	FB_MR5 [Malus x robusta]	0.853	0.096	0.343	7e-17
359495085	1345	PREDICTED: putative disease resistance p	0.891	0.104	0.333	3e-16
359487255	1336	PREDICTED: putative disease resistance p	0.936	0.110	0.326	1e-15
147777746	1199	hypothetical protein VITISV_010202 [Viti	0.891	0.116	0.333	1e-15
147770925	1361	hypothetical protein VITISV_018147 [Viti	0.891	0.102	0.333	5e-15
357456529	1114	Cc-nbs-lrr resistance protein [Medicago	0.840	0.118	0.390	1e-14
296085108	644	unnamed protein product [Vitis vinifera]	0.878	0.214	0.356	2e-14
359496871	1284	PREDICTED: putative disease resistance p	0.936	0.114	0.320	2e-14
147805811	1341	hypothetical protein VITISV_006249 [Viti	0.936	0.109	0.320	2e-14

>gi|356554923|ref|XP_003545790.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Glycine max]

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 59/206 (28%)

Query: 1    MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLE---EDGLPTNLHSLWID 57
            +P + L+ L I  C++L ALP  ++NL SL+EL+IG   PS++   E   P NL SLWI+
Sbjct: 1203 LPASSLSELSIMSCEKLVALPNSMYNLDSLKELEIG-YCPSIQYFPEINFPDNLTSLWIN 1261

Query: 58   GNKK--------IWK------------------------------SMIERG--------- 70
             +          ++K                              S+  +G         
Sbjct: 1262 DHNACEAMFNWGLYKLSFLRDLTIIGGNLFMPLEKLGTMLPSTLTSLTVQGFPHLENLSS 1321

Query: 71   RGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGG 130
             GFH+ +SL  L+I  C        P+L   PEKGLPSSLL+L+I  CP + E+CRKD G
Sbjct: 1322 EGFHKLTSLSKLSIYNC--------PKLLCLPEKGLPSSLLELYIQDCPFLKEQCRKDKG 1373

Query: 131  QYWDLLTHIPSVSIANIWDFDDSTAD 156
            + W  +  +P V I   + +D    D
Sbjct: 1374 RDWLKIADVPYVEIDGKFIYDSDYED 1399

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400131587|emb|CCH50986.1| FB_MR5 [Malus x robusta]

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 89/192 (46%), Gaps = 58/192 (30%)

Query: 4    AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGL----PTNLHSLWIDGN 59
            + L  + I DC RLEALP+ +HN  SL++L I         +GL    P NL SL I   
Sbjct: 1199 SNLREIRITDCDRLEALPEDMHNFNSLEKLIID------YREGLTCSFPANLTSLMI-WK 1251

Query: 60   KKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE---------------------- 97
             K  KS+ E   G HR +SLR+L I G D DMVSFPP+                      
Sbjct: 1252 VKSCKSLWELEWGLHRLTSLRYLWIGGEDPDMVSFPPDMVRMETLLPKSLTELSIGGFPN 1311

Query: 98   -------------------------LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQY 132
                                     L   P++GLP SL +L I+GCP++ E+C+   G+Y
Sbjct: 1312 LKKLSSKGFQFLTSLESLELWDCPKLASIPKEGLPLSLTELCIYGCPVLKERCQPGKGRY 1371

Query: 133  WDLLTHIPSVSI 144
            W  ++HIP + I
Sbjct: 1372 WHKISHIPYIDI 1383

Source: Malus x robusta

Species: Malus x robusta

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495085|ref|XP_003634909.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 93/189 (49%), Gaps = 49/189 (25%)

Query: 1    MPCAKLTRLEIYDCKRLEALPKGLHN-LTSLQELKIGG--ELPSLEEDGLPTNLHSLWID 57
            +P   L  L+I +CK+L++LP+G+H  LTSLQ+L I    E+ S  E GLPTNL SL+I 
Sbjct: 1148 LPTPNLRMLDIRNCKKLKSLPQGMHTLLTSLQDLYISNCPEIDSFPEGGLPTNLSSLYIM 1207

Query: 58   GNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE-------------------- 97
               K+    +E   G      LR L I+G + +   FP E                    
Sbjct: 1208 NCNKLLACRME--WGLQTLPFLRTLQIAGYEKE--RFPEERFLPSTLTSLGIRGFPNLKS 1263

Query: 98   ----------------------LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDL 135
                                  LK FP++GLPSSL +L+I  CPL+ ++C++D G+ W  
Sbjct: 1264 LDNKGLQHLTSLETLEIWKCEKLKSFPKQGLPSSLSRLYIERCPLLKKRCQRDKGKEWPN 1323

Query: 136  LTHIPSVSI 144
            ++HIP ++ 
Sbjct: 1324 VSHIPCIAF 1332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487255|ref|XP_002269744.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/202 (32%), Positives = 96/202 (47%), Gaps = 55/202 (27%)

Query: 1    MPCAKLTRLEIYDCKRLEALPKGLHNL-TSLQELKIGG--ELPSLEEDGLPTNLHSLWID 57
            +P   L RL I +C++L++LP+G+H L TSLQ L I    E+ S  E GLPTNL  L I 
Sbjct: 1139 LPTPNLRRLWILNCEKLKSLPQGMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELDIR 1198

Query: 58   GNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE-------------------- 97
               K+  + +E G        LR LTI G +++   FP E                    
Sbjct: 1199 NCNKLVANQMEWG--LQTLPFLRTLTIEGYENE--RFPEERFLPSTLTSLEIRGFPNLKS 1254

Query: 98   ----------------------LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDL 135
                                  LK FP++GLPSSL  L+I  CPL+ ++C++D G+ W  
Sbjct: 1255 LDNKGLQHLTSLETLRIRECGNLKSFPKQGLPSSLSSLYIEECPLLNKRCQRDKGKEWPK 1314

Query: 136  LTHIPSVSIANIWDFDDSTADD 157
            ++HIP ++      FD S  ++
Sbjct: 1315 ISHIPCIA------FDQSDMEN 1330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777746|emb|CAN60302.1| hypothetical protein VITISV_010202 [Vitis vinifera]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 91/189 (48%), Gaps = 49/189 (25%)

Query: 1    MPCAKLTRLEIYDCKRLEALPKGLHNL-TSLQELKIGG--ELPSLEEDGLPTNLHSLWID 57
            +P   L RL I +C++L++LP+G+H L TSLQ L I    E+ S  E GLPTNL  L I 
Sbjct: 1002 LPTPNLRRLWILNCEKLKSLPQGMHTLLTSLQHLHISNCPEIDSFPEGGLPTNLSELDIR 1061

Query: 58   GNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE-------------------- 97
               K+  + +E G        LR LTI G +++   FP E                    
Sbjct: 1062 NCNKLVANQMEWG--LQTLPFLRTLTIEGYENE--RFPEERFLPSTLTSLEIRGFPNLKS 1117

Query: 98   ----------------------LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDL 135
                                  LK FP++GLPSSL  L+I  CPL+ ++C++D G+ W  
Sbjct: 1118 LDNKGLQHLTSLETLRIRECGNLKSFPKQGLPSSLSSLYIEECPLLNKRCQRDKGKEWPK 1177

Query: 136  LTHIPSVSI 144
            ++HIP ++ 
Sbjct: 1178 ISHIPCIAF 1186

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770925|emb|CAN69703.1| hypothetical protein VITISV_018147 [Vitis vinifera]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 90/189 (47%), Gaps = 49/189 (25%)

Query: 1    MPCAKLTRLEIYDCKRLEALPKGLHN-LTSLQELKIGG--ELPSLEEDGLPTNLHSLWID 57
            +P   L  L I+ CK+L++LP+G+H  LTSLQ L I    E+ S  E GLPTNL SL+I 
Sbjct: 1168 LPTPNLRELRIHGCKKLKSLPQGMHTLLTSLQGLYIAKCPEIDSFPEGGLPTNLSSLYIM 1227

Query: 58   GNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE-------------------- 97
               K+    +E   G      LR L I+G + +   FP E                    
Sbjct: 1228 NCNKLLACRME--WGLQTLPFLRTLRIAGYEKE--RFPEERFLPSTLTSLQIRGFPNLKS 1283

Query: 98   ----------------------LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDL 135
                                  LK FP++GLPSSL +L I  CPL+ ++C++D G+ W  
Sbjct: 1284 LDNKGLQHLTSLETLEIWECEKLKSFPKQGLPSSLSRLDIDNCPLLKKRCQRDKGKEWPN 1343

Query: 136  LTHIPSVSI 144
            ++HIP ++ 
Sbjct: 1344 VSHIPCIAF 1352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456529|ref|XP_003598545.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|358344304|ref|XP_003636230.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355487593|gb|AES68796.1| Cc-nbs-lrr resistance protein [Medicago truncatula] gi|355502165|gb|AES83368.1| Cc-nbs-lrr resistance protein [Medicago truncatula]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 82/151 (54%), Gaps = 19/151 (12%)

Query: 2    PCAKLTRLEIYDCKRLEALPK--GLHNLTSLQELKIGGELPSLE----EDGLPTNLHSLW 55
            PC  LTRLEI  C +L AL    GL  L SL++  +G +  ++E    E  LP N+ SL 
Sbjct: 977  PC--LTRLEIIKCPKLIALRGEWGLFQLNSLKDFIVGDDFENVESFPEESLLPDNIDSLS 1034

Query: 56   IDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWI 115
            +   ++  K  I   +G     SL  L+I  C        P L+  PEKGLP+SL QL+I
Sbjct: 1035 L---RECSKLRIINCKGLLHLKSLTSLSIQHC--------PSLERLPEKGLPNSLSQLFI 1083

Query: 116  WGCPLIAEKCRKDGGQYWDLLTHIPSVSIAN 146
              CPL+ E+ +K+ G+ W  + HIP V+I N
Sbjct: 1084 HKCPLLKEQYQKEEGECWHTICHIPVVNIIN 1114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085108|emb|CBI28603.3| unnamed protein product [Vitis vinifera]

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 86/160 (53%), Gaps = 22/160 (13%)

Query: 1   MPCAKLTRLEIYDCKRL-EALPKGLHNL-TSLQELKIGG--ELPSLEEDGLPTNLHSLWI 56
           M    L  L  Y+C  L ++LP+G+H+L TSL+ L+I G  E+ S   +GLPTNL  L I
Sbjct: 481 MDLTSLQILNFYNCPNLLKSLPQGMHSLLTSLERLRIEGCPEIDSFPIEGLPTNLSDLDI 540

Query: 57  DGNKKIWKSMIERGR----------GFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGL 106
               K+    +E             G    +SL  L+I  C+        +L+  P++GL
Sbjct: 541 RNCNKLMACRMEWHLQTLPFLSWLGGLEHLTSLETLSIYRCE--------KLESLPKQGL 592

Query: 107 PSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIAN 146
           PSSL  L+I  CPL+ ++C++D G+ W  ++HIP + I N
Sbjct: 593 PSSLSHLYILKCPLLEKRCQRDKGKKWPNISHIPCIVIFN 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496871|ref|XP_002269699.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 96/203 (47%), Gaps = 56/203 (27%)

Query: 1    MPCAKLTRLEIYDCKRLEALPKGLHN-LTSLQELKIGG--ELPSLEEDGLPTNLHSLWID 57
            +P   L  L I +C++L++LP+G+H  LTSLQ L I    E+ S  E GLPTNL  L I 
Sbjct: 1087 LPTPNLRLLLIRNCEKLKSLPQGMHTLLTSLQFLHISSCPEIDSFPEGGLPTNLSKLSII 1146

Query: 58   GN-KKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE------------------- 97
            GN  K+  + +E   G      LR L I  C+ +   FP E                   
Sbjct: 1147 GNCSKLVANQME--WGLQTLPFLRTLAIVECEKE--RFPEERFLPSTLTSLEIGGFPNLK 1202

Query: 98   -----------------------LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWD 134
                                   LK FP++GLPSSL +L+I  CPL+ ++C+++ G+ W 
Sbjct: 1203 SLDNKGFQHLTSLETLEIWKCGNLKSFPKQGLPSSLTRLYIKECPLLKKRCQRNKGKEWP 1262

Query: 135  LLTHIPSVSIANIWDFDDSTADD 157
             ++HIP ++      FD  T ++
Sbjct: 1263 NISHIPCIA------FDRQTTNE 1279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805811|emb|CAN60543.1| hypothetical protein VITISV_006249 [Vitis vinifera]

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 96/203 (47%), Gaps = 56/203 (27%)

Query: 1    MPCAKLTRLEIYDCKRLEALPKGLHN-LTSLQELKIGG--ELPSLEEDGLPTNLHSLWID 57
            +P   L  L I +C++L++LP+G+H  LTSLQ L I    E+ S  E GLPTNL  L I 
Sbjct: 1144 LPTPNLRLLLIRNCEKLKSLPQGMHTLLTSLQFLHISSCPEIDSFPEGGLPTNLSKLSII 1203

Query: 58   GN-KKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE------------------- 97
            GN  K+  + +E   G      LR L I  C+ +   FP E                   
Sbjct: 1204 GNCSKLVANQME--WGLQTLPFLRTLAIVECEKE--RFPEERFLPSTLTSLEIGGFPNLK 1259

Query: 98   -----------------------LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWD 134
                                   LK FP++GLPSSL +L+I  CPL+ ++C+++ G+ W 
Sbjct: 1260 SLDNKGFQHLTSLETLEIWKCGNLKSFPKQGLPSSLTRLYIKECPLLKKRCQRNKGKEWP 1319

Query: 135  LLTHIPSVSIANIWDFDDSTADD 157
             ++HIP ++      FD  T ++
Sbjct: 1320 NISHIPCIA------FDRQTTNE 1336

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	157
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.598	0.066	0.373	3.6e-07

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 3.6e-07, P = 3.6e-07
 Identities = 37/99 (37%), Positives = 56/99 (56%)

Query:     1 MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKI--GGELPSLEEDGLPTNLHSLWIDG 58
             +P  KL+ + + +CK+L+ALP+ L  LTSL  L I    E+ ++   G P+NL +L I  
Sbjct:  1236 LPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISL 1295

Query:    59 NKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE 97
               K+    IE G       +LR+L I G ++D+ SFP E
Sbjct:  1296 CDKL-TPRIEWG--LRDLENLRNLEIDGGNEDIESFPEE 1331


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.140   0.461    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      157       157   0.00079  106 3  11 22  0.37    32
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  596 (63 KB)
  Total size of DFA:  176 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.98u 0.10s 15.08t   Elapsed:  00:00:03
  Total cpu time:  14.98u 0.10s 15.08t   Elapsed:  00:00:03
  Start:  Sat May 11 08:33:34 2013   End:  Sat May 11 08:33:37 2013

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00028656001 SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (1336 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	157
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.13
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.69
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.66
PRK15386	426	type III secretion protein GogB; Provisional	98.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.62
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.37
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.36
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.26
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.24
PRK15386	426	type III secretion protein GogB; Provisional	98.22
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.15
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.06
PLN03150	623	hypothetical protein; Provisional	98.04
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.03
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.0
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.85
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.78
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.77
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.75
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.66
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.61
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.54
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.53
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.35
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.28
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.26
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.24
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.94
PLN03150	623	hypothetical protein; Provisional	96.88
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.81
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.74
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	96.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.53
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.0
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.81
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.81
KOG4237	498	consensus Extracellular matrix protein slit, conta	95.62
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.3
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.23
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	94.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	93.99
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.82
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.81
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.74
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.46
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	93.17
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.49
KOG1947	482	consensus Leucine rich repeat proteins, some prote	91.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.41
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	89.82
KOG4341	483	consensus F-box protein containing LRR [General fu	89.69
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.87
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	88.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	88.44
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	88.37
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	86.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	83.14
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	83.09

>PLN03210 Resistant to P

Probab=99.13  E-value=1.9e-10  Score=101.81  Aligned_cols=111  Identities=23%  Similarity=0.342  Sum_probs=76.2

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCCCCCccEEEecCCCCchhhhhhcc-----------
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERG-----------   70 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~-----------   70 (157)
                      ++|+.|++++|..+..+|..++++++|+.|++++  .+..+|....+++|+.|++++|..+. .+|...           
T Consensus       778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~-~~p~~~~nL~~L~Ls~n  856 (1153)
T PLN03210        778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLR-TFPDISTNISDLNLSRT  856 (1153)
T ss_pred             ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccc-cccccccccCEeECCCC
Confidence            5889999999888888999999999999999987  78888876666788999998887775 554310           


Q ss_pred             ------ccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713           71 ------RGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIA  122 (157)
Q Consensus        71 ------~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~  122 (157)
                            ..+..+++|+.|++.+ |+.++.+|..+..+      ++|+.+++.+|+.+.
T Consensus       857 ~i~~iP~si~~l~~L~~L~L~~-C~~L~~l~~~~~~L------~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        857 GIEEVPWWIEKFSNLSFLDMNG-CNNLQRVSLNISKL------KHLETVDFSDCGALT  907 (1153)
T ss_pred             CCccChHHHhcCCCCCEEECCC-CCCcCccCcccccc------cCCCeeecCCCcccc
Confidence                  0133445555555555 55555544433333      456666666666554

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.95  E-value=2.5e-09  Score=94.82  Aligned_cols=105  Identities=24%  Similarity=0.446  Sum_probs=79.5

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      .+|+.|++.++ .++.++.++..+++|+.|++++  .+..+|.....++|+.|++.+|..+. .+|.   .++.+++|+.
T Consensus       611 ~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~---si~~L~~L~~  685 (1153)
T PLN03210        611 ENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPS---SIQYLNKLED  685 (1153)
T ss_pred             cCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccch---hhhccCCCCE
Confidence            46777777774 5777777778888899999887  67777766666789999999998887 7887   5788899999


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhH
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLI  121 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l  121 (157)
                      |++++ |..++.+|..+ .      +++|+.|.+++|..+
T Consensus       686 L~L~~-c~~L~~Lp~~i-~------l~sL~~L~Lsgc~~L  717 (1153)
T PLN03210        686 LDMSR-CENLEILPTGI-N------LKSLYRLNLSGCSRL  717 (1153)
T ss_pred             EeCCC-CCCcCccCCcC-C------CCCCCEEeCCCCCCc
Confidence            99998 88877777533 1      256666666666543

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.69  E-value=4.6e-08  Score=85.31  Aligned_cols=104  Identities=19%  Similarity=0.279  Sum_probs=64.6

Q ss_pred             CCCcceEeeecCcCCcccCcccC-CCCcccEEEeeC-cccC-CCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLH-NLTSLQELKIGG-ELPS-LEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~-~l~~-lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      .++|+.|+++++.--..+|..+. .+++|++|++++ .+.. +|. +..++|++|++++|. +...+|.   .++++++|
T Consensus        92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~-~~~~~p~---~~~~l~~L  166 (968)
T PLN00113         92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNM-LSGEIPN---DIGSFSSL  166 (968)
T ss_pred             CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEECcCCc-ccccCCh---HHhcCCCC
Confidence            35788888888643346776654 788888888887 5543 343 344578888887753 3325555   46777888


Q ss_pred             CEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           80 RHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      ++|++++ |.....+|..+..+      ++|+.|++.+|
T Consensus       167 ~~L~L~~-n~l~~~~p~~~~~l------~~L~~L~L~~n  198 (968)
T PLN00113        167 KVLDLGG-NVLVGKIPNSLTNL------TSLEFLTLASN  198 (968)
T ss_pred             CEEECcc-CcccccCChhhhhC------cCCCeeeccCC
Confidence            8888877 55444555433333      34444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.66  E-value=5.2e-08  Score=84.97  Aligned_cols=103  Identities=19%  Similarity=0.239  Sum_probs=49.5

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-ccc-CCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELP-SLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~-~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      +|++|++++|.-...+|..++++++|++|++++ .+. .+|.. +..++|++|++++|.-.. .+|.   .++++++|++
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~p~---~l~~l~~L~~  216 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG-QIPR---ELGQMKSLKW  216 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC-cCCh---HHcCcCCccE
Confidence            455555555432234555555666666666665 333 22321 122456666665543222 4444   3555566666


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      |++++ |.....+|..+..+      ++|++|++.+|
T Consensus       217 L~L~~-n~l~~~~p~~l~~l------~~L~~L~L~~n  246 (968)
T PLN00113        217 IYLGY-NNLSGEIPYEIGGL------TSLNHLDLVYN  246 (968)
T ss_pred             EECcC-CccCCcCChhHhcC------CCCCEEECcCc
Confidence            66655 43333344333332      45555555544

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.64  E-value=4.6e-08  Score=77.41  Aligned_cols=104  Identities=31%  Similarity=0.437  Sum_probs=75.6

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      +.+++.|++++| .++.+|.   -.++|+.|.+++  .+..+|. .++++|+.|.|++|..+. .+|.         +|+
T Consensus        51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~-sLP~---------sLe  115 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEIS-GLPE---------SVR  115 (426)
T ss_pred             hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccc-cccc---------ccc
Confidence            357889999998 7888883   345799999987  7777774 467899999999998886 6664         355


Q ss_pred             EEEEecC-CCCCcccCcccccCCC------------CCCCCCccEEeeeCChhH
Q 040713           81 HLTISGC-DDDMVSFPPELKYFPE------------KGLPSSLLQLWIWGCPLI  121 (157)
Q Consensus        81 ~L~i~~~-c~~l~~lp~~l~~lp~------------~~l~~~L~~L~i~~c~~l  121 (157)
                      .|.+.+. |..+..+|..|+.|.-            ..+|++|+.|.+.+|..+
T Consensus       116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence            5555430 4457778877666532            135679999999988754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.62  E-value=1.2e-09  Score=76.84  Aligned_cols=109  Identities=20%  Similarity=0.346  Sum_probs=67.4

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      .+.++|.+++ +++..+|+.+..+.+|+.|++++ +++.+|... -.+.|+.|.+. .+.+. .+|.   ++++++.|+.
T Consensus        33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvg-mnrl~-~lpr---gfgs~p~lev  106 (264)
T KOG0617|consen   33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVG-MNRLN-ILPR---GFGSFPALEV  106 (264)
T ss_pred             hhhhhhhccc-CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecc-hhhhh-cCcc---ccCCCchhhh
Confidence            4567777777 47777787788888888888887 777777542 22466666663 35554 5665   4777777777


Q ss_pred             EEEecCCCC-CcccCc----------------ccccCCCC-CCCCCccEEeeeCCh
Q 040713           82 LTISGCDDD-MVSFPP----------------ELKYFPEK-GLPSSLLQLWIWGCP  119 (157)
Q Consensus        82 L~i~~~c~~-l~~lp~----------------~l~~lp~~-~l~~~L~~L~i~~c~  119 (157)
                      |++.+ .+. -.++|-                .++.+|.. |-.++||.|.+++..
T Consensus       107 ldlty-nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  107 LDLTY-NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             hhccc-cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc
Confidence            77765 221 122332                22333333 334777888777765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.37  E-value=7.8e-07  Score=51.96  Aligned_cols=55  Identities=27%  Similarity=0.506  Sum_probs=32.2

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCC--CCccEEEecCC
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLP--TNLHSLWIDGN   59 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~--~~L~~L~i~~c   59 (157)
                      |+|++|++++| .+..+|. .+..+++|++|++++ .+..++++.+.  ++|++|++++|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            46677777765 5666664 445666666666666 55555554332  45666665554

...

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.36  E-value=2.1e-08  Score=70.61  Aligned_cols=101  Identities=25%  Similarity=0.393  Sum_probs=57.7

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCC-----------------------
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGN-----------------------   59 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c-----------------------   59 (157)
                      +|+.|++++ +.++.+|..+..+++|+.|++.- .+..+|.+ |-.|.|+.|++.+.                       
T Consensus        57 nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~  135 (264)
T KOG0617|consen   57 NLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLG  135 (264)
T ss_pred             hhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhc
Confidence            455566655 35666666666666666666655 55555543 22235555555442                       


Q ss_pred             -CCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           60 -KKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        60 -~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                       +..+ .+|.   .++.+++|+.|.+++  +.+-++|.++..+      ..|++|+|.+.
T Consensus       136 dndfe-~lp~---dvg~lt~lqil~lrd--ndll~lpkeig~l------t~lrelhiqgn  183 (264)
T KOG0617|consen  136 DNDFE-ILPP---DVGKLTNLQILSLRD--NDLLSLPKEIGDL------TRLRELHIQGN  183 (264)
T ss_pred             CCCcc-cCCh---hhhhhcceeEEeecc--CchhhCcHHHHHH------HHHHHHhcccc
Confidence             2333 4455   367788888888887  5565666654444      55666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.26  E-value=8.4e-07  Score=62.87  Aligned_cols=103  Identities=22%  Similarity=0.335  Sum_probs=35.9

Q ss_pred             CcceEeeecCcCCcccCcccC-CCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccC-CCCCccCE
Q 040713            5 KLTRLEIYDCKRLEALPKGLH-NLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGF-HRFSSLRH   81 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l-~~l~~L~~   81 (157)
                      .+++|++.++ .+..+. .++ .+.+|+.|++++ .+..+..-...++|+.|++++ +.++ .+.+   .+ ..+++|++
T Consensus        20 ~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~-N~I~-~i~~---~l~~~lp~L~~   92 (175)
T PF14580_consen   20 KLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSN-NRIS-SISE---GLDKNLPNLQE   92 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--S-S----S-CH---HHHHH-TT--E
T ss_pred             cccccccccc-cccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCC-CCCC-cccc---chHHhCCcCCE
Confidence            5788999985 566654 565 688999999999 888776544457999999987 5676 5643   23 35899999


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChh
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPL  120 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~  120 (157)
                      |++++  +++..+-+ +..+   .-.++|+.|++.++|-
T Consensus        93 L~L~~--N~I~~l~~-l~~L---~~l~~L~~L~L~~NPv  125 (175)
T PF14580_consen   93 LYLSN--NKISDLNE-LEPL---SSLPKLRVLSLEGNPV  125 (175)
T ss_dssp             EE-TT--S---SCCC-CGGG---GG-TT--EEE-TT-GG
T ss_pred             EECcC--CcCCChHH-hHHH---HcCCCcceeeccCCcc
Confidence            99998  65654431 2222   1137899999999883

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.24  E-value=3e-06  Score=49.44  Aligned_cols=54  Identities=24%  Similarity=0.439  Sum_probs=24.9

Q ss_pred             cccEEEeeC-cccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEec
Q 040713           29 SLQELKIGG-ELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISG   86 (157)
Q Consensus        29 ~L~~L~l~~-~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~   86 (157)
                      +|++|++++ .+..+|.+.+.  ++|+.|++++ +.++ .++..  .+.++++|++|++++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~-~i~~~--~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLT-SIPPD--AFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSES-EEETT--TTTTSTTESEEEETS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccC-ccCHH--HHcCCCCCCEEeCcC
Confidence            445555555 44444443322  4555555543 2443 44433  344555555555544

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.22  E-value=3.4e-06  Score=67.00  Aligned_cols=76  Identities=29%  Similarity=0.540  Sum_probs=50.0

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCCCCCccEEEecC--CCCchhhhhhccccCCC----
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGLPTNLHSLWIDG--NKKIWKSMIERGRGFHR----   75 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~~~~L~~L~i~~--c~~l~~~lp~~~~~l~~----   75 (157)
                      ++|++|.+++|.+++.+|..+  .++|++|.+++  .+..+|.     +|+.|.+..  |..+. .+|.   ++..    
T Consensus        72 ~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-----sLe~L~L~~n~~~~L~-~LPs---sLk~L~I~  140 (426)
T PRK15386         72 NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-----SVRSLEIKGSATDSIK-NVPN---GLTSLSIN  140 (426)
T ss_pred             CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----ccceEEeCCCCCcccc-cCcc---hHhheecc
Confidence            489999999999998888655  35788888887  5655543     566666643  12233 3443   1211    


Q ss_pred             -------------C-CccCEEEEecCCCCC
Q 040713           76 -------------F-SSLRHLTISGCDDDM   91 (157)
Q Consensus        76 -------------l-~~L~~L~i~~~c~~l   91 (157)
                                   + ++|++|.+.+ |..+
T Consensus       141 ~~n~~~~~~lp~~LPsSLk~L~Is~-c~~i  169 (426)
T PRK15386        141 SYNPENQARIDNLISPSLKTLSLTG-CSNI  169 (426)
T ss_pred             ccccccccccccccCCcccEEEecC-CCcc
Confidence                         2 4788899988 7754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.15  E-value=3.1e-07  Score=72.13  Aligned_cols=103  Identities=27%  Similarity=0.390  Sum_probs=69.0

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      ++|..|++++ +-+-.+|..++.+..|+.|+|+. .+..+|.-... ..++.+-.++ +.+. .+++.  ++.+|.+|..
T Consensus       435 ~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~-~vd~~--~l~nm~nL~t  509 (565)
T KOG0472|consen  435 QKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIG-SVDPS--GLKNMRNLTT  509 (565)
T ss_pred             hcceeeeccc-chhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-cccc-ccChH--Hhhhhhhcce
Confidence            4566667766 35666777777777777777776 66666543221 2333333333 4554 56654  5888889999


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++.+  +.+..+|..++..      .+|++|.+++.|
T Consensus       510 LDL~n--Ndlq~IPp~Lgnm------tnL~hLeL~gNp  539 (565)
T KOG0472|consen  510 LDLQN--NDLQQIPPILGNM------TNLRHLELDGNP  539 (565)
T ss_pred             eccCC--CchhhCChhhccc------cceeEEEecCCc
Confidence            99987  7777777777766      899999999887

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.06  E-value=1e-06  Score=75.01  Aligned_cols=41  Identities=20%  Similarity=0.443  Sum_probs=25.2

Q ss_pred             CccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc
Q 040713           50 NLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP   96 (157)
Q Consensus        50 ~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~   96 (157)
                      +|+.|++++ +.+. .+|..  .+.++..|++|+++|  +.++.+|.
T Consensus       384 hLKVLhLsy-NrL~-~fpas--~~~kle~LeeL~LSG--NkL~~Lp~  424 (1081)
T KOG0618|consen  384 HLKVLHLSY-NRLN-SFPAS--KLRKLEELEELNLSG--NKLTTLPD  424 (1081)
T ss_pred             ceeeeeecc-cccc-cCCHH--HHhchHHhHHHhccc--chhhhhhH
Confidence            566666665 3454 56654  456666666777766  55655554

>PLN03150 hypothetical protein; Provisional

Probab=98.04  E-value=1.2e-05  Score=67.56  Aligned_cols=104  Identities=19%  Similarity=0.215  Sum_probs=75.7

Q ss_pred             cceEeeecCcCCcccCcccCCCCcccEEEeeC-ccc-CCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELP-SLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~-~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++.|++.++.--..+|..+..+++|+.|++++ .+. .+|.. +..++|+.|+++++ .+...+|+   .++++++|+.|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~---~l~~L~~L~~L  495 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPE---SLGQLTSLRIL  495 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCch---HHhcCCCCCEE
Confidence            66788888654456888889999999999998 765 45532 34579999999886 55547777   58899999999


Q ss_pred             EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++++ +.....+|..+..+.     .++..+.+.+++
T Consensus       496 ~Ls~-N~l~g~iP~~l~~~~-----~~~~~l~~~~N~  526 (623)
T PLN03150        496 NLNG-NSLSGRVPAALGGRL-----LHRASFNFTDNA  526 (623)
T ss_pred             ECcC-CcccccCChHHhhcc-----ccCceEEecCCc
Confidence            9998 665557776554431     345566666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.03  E-value=9.9e-07  Score=73.01  Aligned_cols=89  Identities=21%  Similarity=0.327  Sum_probs=55.4

Q ss_pred             cCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcc
Q 040713           20 LPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPE   97 (157)
Q Consensus        20 lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~   97 (157)
                      +|..+..+.-|..|++++ ++..+|.+- ...++-.|.+++ ++++ .+|..  .+-+++.|-.|+++.  +.++.+|..
T Consensus        95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~-N~Ie-tIPn~--lfinLtDLLfLDLS~--NrLe~LPPQ  168 (1255)
T KOG0444|consen   95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSY-NNIE-TIPNS--LFINLTDLLFLDLSN--NRLEMLPPQ  168 (1255)
T ss_pred             CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEccc-Cccc-cCCch--HHHhhHhHhhhcccc--chhhhcCHH
Confidence            555666666666666666 666666531 234555666665 4555 66653  344566666677776  666666666


Q ss_pred             cccCCCCCCCCCccEEeeeCChh
Q 040713           98 LKYFPEKGLPSSLLQLWIWGCPL  120 (157)
Q Consensus        98 l~~lp~~~l~~~L~~L~i~~c~~  120 (157)
                      ++.+      ..|++|.++++|-
T Consensus       169 ~RRL------~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  169 IRRL------SMLQTLKLSNNPL  185 (1255)
T ss_pred             HHHH------hhhhhhhcCCChh
Confidence            6665      6777777777763

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.00  E-value=5.8e-07  Score=73.55  Aligned_cols=106  Identities=24%  Similarity=0.399  Sum_probs=51.8

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +.|+.|++++ +.+.++++ .+..+..|+.|++++ .+..+.++.|  .++|+.|+++++ .+.-.+.+....+.+|++|
T Consensus       317 qkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N-~ls~~IEDaa~~f~gl~~L  394 (873)
T KOG4194|consen  317 QKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN-ELSWCIEDAAVAFNGLPSL  394 (873)
T ss_pred             ccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC-eEEEEEecchhhhccchhh
Confidence            3444455544 23444432 223444444444444 4444433322  256777777653 3321222221235567888


Q ss_pred             CEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +.|.+.+  ++++++|. .+..+      .+|++|++.++.
T Consensus       395 rkL~l~g--Nqlk~I~krAfsgl------~~LE~LdL~~Na  427 (873)
T KOG4194|consen  395 RKLRLTG--NQLKSIPKRAFSGL------EALEHLDLGDNA  427 (873)
T ss_pred             hheeecC--ceeeecchhhhccC------cccceecCCCCc
Confidence            8888887  65665554 11222      466777666544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.96  E-value=1.9e-05  Score=67.51  Aligned_cols=48  Identities=38%  Similarity=0.484  Sum_probs=27.3

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG   58 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~   58 (157)
                      +|+.|.+.+ ++++.+|..   +++|++|++++ .+..+|.  .+++|+.|++.+
T Consensus       223 ~L~~L~L~~-N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~  271 (788)
T PRK15387        223 HITTLVIPD-NNLTSLPAL---PPELRTLEVSGNQLTSLPV--LPPGLLELSIFS  271 (788)
T ss_pred             CCCEEEccC-CcCCCCCCC---CCCCcEEEecCCccCcccC--cccccceeeccC
Confidence            566666666 356666642   45666666666 6665553  234555555544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.94  E-value=5.1e-07  Score=74.67  Aligned_cols=93  Identities=20%  Similarity=0.342  Sum_probs=49.7

Q ss_pred             CcccCcccCCCCcccEEEeeC---cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCc
Q 040713           17 LEALPKGLHNLTSLQELKIGG---ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMV   92 (157)
Q Consensus        17 l~~lp~~~~~l~~L~~L~l~~---~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~   92 (157)
                      ++.+|..+..++.|+.|+..+   ....+|.+ |.+.+|+.+...+ ++++ .+|+   ++.....|+.|.+.  |+.+-
T Consensus       280 Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LE-lVPE---glcRC~kL~kL~L~--~NrLi  352 (1255)
T KOG0444|consen  280 LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLE-LVPE---GLCRCVKLQKLKLD--HNRLI  352 (1255)
T ss_pred             hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccc-cCch---hhhhhHHHHHhccc--cccee
Confidence            334444444444444444444   33334432 2233455554443 3454 4555   45555666666655  35454


Q ss_pred             ccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713           93 SFPPELKYFPEKGLPSSLLQLWIWGCPLIA  122 (157)
Q Consensus        93 ~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~  122 (157)
                      .+|+.+.-      .+.|+.|+++.+|++.
T Consensus       353 TLPeaIHl------L~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  353 TLPEAIHL------LPDLKVLDLRENPNLV  376 (1255)
T ss_pred             echhhhhh------cCCcceeeccCCcCcc
Confidence            55544444      4789999999998875

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.85  E-value=1.2e-06  Score=68.92  Aligned_cols=85  Identities=24%  Similarity=0.284  Sum_probs=50.4

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      .|++|+... +.++.+|+.++.+.+|.-|++.. .+..+|+-+--+.|+.|++.. +.++ .+|.+  .+.++++|..|+
T Consensus       184 ~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~-N~i~-~lpae--~~~~L~~l~vLD  258 (565)
T KOG0472|consen  184 RLKHLDCNS-NLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGE-NQIE-MLPAE--HLKHLNSLLVLD  258 (565)
T ss_pred             HHHhcccch-hhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcc-cHHH-hhHHH--Hhcccccceeee
Confidence            355566554 46788888888888888888888 666666421113455555533 3444 45543  344555555555


Q ss_pred             EecCCCCCcccCc
Q 040713           84 ISGCDDDMVSFPP   96 (157)
Q Consensus        84 i~~~c~~l~~lp~   96 (157)
                      +++  ++++++|.
T Consensus       259 LRd--Nklke~Pd  269 (565)
T KOG0472|consen  259 LRD--NKLKEVPD  269 (565)
T ss_pred             ccc--cccccCch
Confidence            555  55555554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.85  E-value=1.7e-06  Score=70.51  Aligned_cols=87  Identities=33%  Similarity=0.501  Sum_probs=45.8

Q ss_pred             cceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      |++|+++. +.+..+|..+..++ |+.|.+++ +++.+|++ +...+|..|+.+.| ++. .+|.   .++.+.+|+.|.
T Consensus       123 lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~-slps---ql~~l~slr~l~  195 (722)
T KOG0532|consen  123 LTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQ-SLPS---QLGYLTSLRDLN  195 (722)
T ss_pred             HHHhhhcc-chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhh-hchH---HhhhHHHHHHHH
Confidence            44555555 35555666555554 66666666 66666654 33445666666543 443 4554   255555555555


Q ss_pred             EecCCCCCcccCcccccC
Q 040713           84 ISGCDDDMVSFPPELKYF  101 (157)
Q Consensus        84 i~~~c~~l~~lp~~l~~l  101 (157)
                      ++.  +.+..+|+++..|
T Consensus       196 vrR--n~l~~lp~El~~L  211 (722)
T KOG0532|consen  196 VRR--NHLEDLPEELCSL  211 (722)
T ss_pred             Hhh--hhhhhCCHHHhCC
Confidence            554  4444444433333

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.84  E-value=4.5e-05  Score=65.22  Aligned_cols=79  Identities=24%  Similarity=0.428  Sum_probs=49.0

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|+.|+++++ +++.+|..+.  ++|+.|++++ .+..+|. .++++|+.|++++| .+. .+|.+   +  .++|+.|
T Consensus       199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N-~L~-~LP~~---l--~s~L~~L  267 (754)
T PRK15370        199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPA-TLPDTIQEMELSIN-RIT-ELPER---L--PSALQSL  267 (754)
T ss_pred             cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCCh-hhhccccEEECcCC-ccC-cCChh---H--hCCCCEE
Confidence            46777777774 6777776543  5777777777 7777765 34456777777664 454 56542   2  2456777


Q ss_pred             EEecCCCCCcccC
Q 040713           83 TISGCDDDMVSFP   95 (157)
Q Consensus        83 ~i~~~c~~l~~lp   95 (157)
                      ++++  +.+..+|
T Consensus       268 ~Ls~--N~L~~LP  278 (754)
T PRK15370        268 DLFH--NKISCLP  278 (754)
T ss_pred             ECcC--CccCccc
Confidence            7764  4454444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.78  E-value=5.8e-05  Score=64.57  Aligned_cols=79  Identities=25%  Similarity=0.407  Sum_probs=48.3

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|+.|++++| .++.+|..+  ..+|+.|++++ .+..+|.. ++++|+.|++++ +++. .+|..   +.  ++|+.|
T Consensus       220 ~nL~~L~Ls~N-~LtsLP~~l--~~~L~~L~Ls~N~L~~LP~~-l~s~L~~L~Ls~-N~L~-~LP~~---l~--~sL~~L  288 (754)
T PRK15370        220 GNIKTLYANSN-QLTSIPATL--PDTIQEMELSINRITELPER-LPSALQSLDLFH-NKIS-CLPEN---LP--EELRYL  288 (754)
T ss_pred             cCCCEEECCCC-ccccCChhh--hccccEEECcCCccCcCChh-HhCCCCEEECcC-CccC-ccccc---cC--CCCcEE
Confidence            47888888875 577777644  24677777777 66666643 445677777753 4565 56542   21  366666


Q ss_pred             EEecCCCCCcccC
Q 040713           83 TISGCDDDMVSFP   95 (157)
Q Consensus        83 ~i~~~c~~l~~lp   95 (157)
                      ++++  +.++.+|
T Consensus       289 ~Ls~--N~Lt~LP  299 (754)
T PRK15370        289 SVYD--NSIRTLP  299 (754)
T ss_pred             ECCC--CccccCc
Confidence            6666  3454444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.77  E-value=2.5e-05  Score=42.64  Aligned_cols=39  Identities=23%  Similarity=0.510  Sum_probs=30.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLE   43 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp   43 (157)
                      ++|++|+++++ .++.+|..++++++|+.|++++ .+..++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            47899999885 7888887788999999999988 766654

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.75  E-value=3.8e-06  Score=71.70  Aligned_cols=102  Identities=27%  Similarity=0.440  Sum_probs=64.6

Q ss_pred             CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|+.|++++ +.+.++|.. +.++..|+.|++++ .++.+|... ..+.|++|...+ +.+. .+|+    +..++.|+
T Consensus       383 ~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~-~fPe----~~~l~qL~  455 (1081)
T KOG0618|consen  383 KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLL-SFPE----LAQLPQLK  455 (1081)
T ss_pred             cceeeeeecc-cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Ccee-echh----hhhcCcce
Confidence            4677777777 456667653 35777777777777 777776432 224667776654 3454 6774    56677888


Q ss_pred             EEEEecCCCCCcccCcccccCCCCCCC-CCccEEeeeCChh
Q 040713           81 HLTISGCDDDMVSFPPELKYFPEKGLP-SSLLQLWIWGCPL  120 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp~~l~~lp~~~l~-~~L~~L~i~~c~~  120 (157)
                      .++++  |+++..+     .+|+ ..| ++|++|+++++..
T Consensus       456 ~lDlS--~N~L~~~-----~l~~-~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  456 VLDLS--CNNLSEV-----TLPE-ALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             EEecc--cchhhhh-----hhhh-hCCCcccceeeccCCcc
Confidence            88887  4655332     1111 233 7899999988774

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.66  E-value=2.8e-05  Score=64.05  Aligned_cols=87  Identities=18%  Similarity=0.370  Sum_probs=52.7

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-c------------------------ccCCCCCCCC--CCccEEE
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-E------------------------LPSLEEDGLP--TNLHSLW   55 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~------------------------l~~lp~~~~~--~~L~~L~   55 (157)
                      .|||+.+.+.+ +.++.+|....-..+|+.|.+.+ .                        |..++...+|  .++++|+
T Consensus       101 l~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~  179 (873)
T KOG4194|consen  101 LPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN  179 (873)
T ss_pred             CCcceeeeecc-chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence            36788888877 46777776554444455555555 3                        3334433444  4677777


Q ss_pred             ecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc
Q 040713           56 IDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP   96 (157)
Q Consensus        56 i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~   96 (157)
                      +++ +.++ .+..+  .+.++.+|..|.++.  +.+..+|.
T Consensus       180 La~-N~It-~l~~~--~F~~lnsL~tlkLsr--NrittLp~  214 (873)
T KOG4194|consen  180 LAS-NRIT-TLETG--HFDSLNSLLTLKLSR--NRITTLPQ  214 (873)
T ss_pred             ecc-cccc-ccccc--cccccchheeeeccc--CcccccCH
Confidence            765 3454 45444  566677777777776  55666655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.61  E-value=0.00022  Score=61.25  Aligned_cols=46  Identities=33%  Similarity=0.497  Sum_probs=20.4

Q ss_pred             eEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713            8 RLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG   58 (157)
Q Consensus         8 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~   58 (157)
                      .|+++++ +++.+|..+.  ++|+.|++.+ ++..+|.  .+++|++|++++
T Consensus       205 ~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~  251 (788)
T PRK15387        205 VLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSG  251 (788)
T ss_pred             EEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecC
Confidence            3444443 4444444332  2444555554 4444443  234455555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.54  E-value=3.1e-05  Score=67.25  Aligned_cols=80  Identities=21%  Similarity=0.263  Sum_probs=61.8

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      .|.|..|++++|..+..+|..++.+-+|++|++++ .+..+|.+ +....|.+|++..+..+. .+|.   ....+++|+
T Consensus       570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~-~~~~---i~~~L~~Lr  645 (889)
T KOG4658|consen  570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLE-SIPG---ILLELQSLR  645 (889)
T ss_pred             CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccc-cccc---hhhhccccc
Confidence            36899999999999999999999999999999999 99988875 234577788887766664 4432   344477777


Q ss_pred             EEEEec
Q 040713           81 HLTISG   86 (157)
Q Consensus        81 ~L~i~~   86 (157)
                      +|.+..
T Consensus       646 ~L~l~~  651 (889)
T KOG4658|consen  646 VLRLPR  651 (889)
T ss_pred             EEEeec
Confidence            777754

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.53  E-value=0.00012  Score=51.86  Aligned_cols=81  Identities=23%  Similarity=0.400  Sum_probs=24.9

Q ss_pred             CCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccc-cC
Q 040713           25 HNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELK-YF  101 (157)
Q Consensus        25 ~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~-~l  101 (157)
                      .+..+++.|++.+ .|+.+...+ ...+|+.|++++| .++ .++    ++..++.|++|++++  +.++++...+. .+
T Consensus        16 ~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N-~I~-~l~----~l~~L~~L~~L~L~~--N~I~~i~~~l~~~l   87 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNN-QIT-KLE----GLPGLPRLKTLDLSN--NRISSISEGLDKNL   87 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S---T----T----TT--EEE--S--S---S-CHHHHHH-
T ss_pred             ccccccccccccccccccccchhhhhcCCCEEECCCC-CCc-ccc----CccChhhhhhcccCC--CCCCccccchHHhC
Confidence            3556789999999 777775544 3568999999985 676 665    478899999999998  76666543332 34


Q ss_pred             CCCCCCCCccEEeeeCCh
Q 040713          102 PEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus       102 p~~~l~~~L~~L~i~~c~  119 (157)
                            ++|++|++.++.
T Consensus        88 ------p~L~~L~L~~N~   99 (175)
T PF14580_consen   88 ------PNLQELYLSNNK   99 (175)
T ss_dssp             ------TT--EEE-TTS-
T ss_pred             ------CcCCEEECcCCc
Confidence                  689999997643

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.35  E-value=5.2e-05  Score=58.03  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=40.5

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCch
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIW   63 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~   63 (157)
                      .|+.+++++ +.++.+.+.+.-+|.++.|+++. .+..+....+.++|+.|+++++ .+.
T Consensus       285 ~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N-~Ls  342 (490)
T KOG1259|consen  285 ELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGN-LLA  342 (490)
T ss_pred             hhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccc-hhH
Confidence            467788877 46777777777788888888887 6666655555678888888763 443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.28  E-value=4.7e-05  Score=62.35  Aligned_cols=99  Identities=24%  Similarity=0.374  Sum_probs=58.7

Q ss_pred             cceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      |+.|.+++ ++++.+|+.++.+..|..|+.+. .+.++|.. +.+.+|+.|.+... .+. .+|++   +..| .|..|+
T Consensus       145 Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn-~l~-~lp~E---l~~L-pLi~lD  217 (722)
T KOG0532|consen  145 LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN-HLE-DLPEE---LCSL-PLIRLD  217 (722)
T ss_pred             ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh-hhh-hCCHH---HhCC-ceeeee
Confidence            55666666 57888888888777777777777 66666643 33346666666553 443 55553   3332 355566


Q ss_pred             EecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           84 ISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        84 i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++  |+++..||-.+..+      ..|++|-+.++|
T Consensus       218 fS--cNkis~iPv~fr~m------~~Lq~l~LenNP  245 (722)
T KOG0532|consen  218 FS--CNKISYLPVDFRKM------RHLQVLQLENNP  245 (722)
T ss_pred             cc--cCceeecchhhhhh------hhheeeeeccCC
Confidence            66  46555555544444      455666555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.26  E-value=0.00063  Score=37.01  Aligned_cols=39  Identities=21%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCccc
Q 040713           49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF   94 (157)
Q Consensus        49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~l   94 (157)
                      ++|++|+++++ +++ .+|.   .++++++|+.|++++ + .+.++
T Consensus         1 ~~L~~L~l~~N-~i~-~l~~---~l~~l~~L~~L~l~~-N-~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QIT-DLPP---ELSNLPNLETLNLSN-N-PISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-S-SHGG---HGTTCTTSSEEEETS-S-CCSBE
T ss_pred             CcceEEEccCC-CCc-ccCc---hHhCCCCCCEEEecC-C-CCCCC
Confidence            47888888874 776 7776   378889999999988 4 45544

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.24  E-value=9.3e-05  Score=56.44  Aligned_cols=11  Identities=27%  Similarity=0.347  Sum_probs=5.6

Q ss_pred             CCccEEEecCC
Q 040713           49 TNLHSLWIDGN   59 (157)
Q Consensus        49 ~~L~~L~i~~c   59 (157)
                      ++|+.|++++|
T Consensus       137 ~~L~~L~L~~n  147 (319)
T cd00116         137 PALEKLVLGRN  147 (319)
T ss_pred             CCceEEEcCCC
Confidence            34555555544

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.12  E-value=9.5e-05  Score=62.77  Aligned_cols=75  Identities=29%  Similarity=0.496  Sum_probs=35.0

Q ss_pred             CcceEeeecCcCC-cccCcccC-CCCcccEEEeeC-cccC--CCC--CCCCCCccEEEecCCCCchhhhhhccccCCCCC
Q 040713            5 KLTRLEIYDCKRL-EALPKGLH-NLTSLQELKIGG-ELPS--LEE--DGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFS   77 (157)
Q Consensus         5 ~L~~L~l~~c~~l-~~lp~~~~-~l~~L~~L~l~~-~l~~--lp~--~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~   77 (157)
                      +|++|+|++-..+ ..+|..++ .||+|++|.+.+ .+..  |..  ..| |+|..|+|+++ +++ .+.    ++++++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sF-pNL~sLDIS~T-nI~-nl~----GIS~Lk  195 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASF-PNLRSLDISGT-NIS-NLS----GISRLK  195 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhcc-CccceeecCCC-Ccc-CcH----HHhccc
Confidence            5666666663322 22343333 566666666666 2211  111  012 36666666664 333 331    344455


Q ss_pred             ccCEEEEec
Q 040713           78 SLRHLTISG   86 (157)
Q Consensus        78 ~L~~L~i~~   86 (157)
                      +|+.|.+.+
T Consensus       196 nLq~L~mrn  204 (699)
T KOG3665|consen  196 NLQVLSMRN  204 (699)
T ss_pred             cHHHHhccC
Confidence            555554443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.03  E-value=0.00035  Score=60.84  Aligned_cols=86  Identities=22%  Similarity=0.289  Sum_probs=57.1

Q ss_pred             CCcceEeeecCcC-CcccCcc-cCCCCcccEEEeeC--cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKR-LEALPKG-LHNLTSLQELKIGG--ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~-l~~lp~~-~~~l~~L~~L~l~~--~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      +.|++|-+.+... +..++.. +..++.|+.|++++  .+..+|.. +-.-+|++|++++ ..+. .+|.   ++++|..
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~-~LP~---~l~~Lk~  619 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGIS-HLPS---GLGNLKK  619 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCcc-ccch---HHHHHHh
Confidence            3566666666332 4444443 56788888888885  77777765 3345788888876 4666 7777   5888888


Q ss_pred             cCEEEEecCCCCCcccC
Q 040713           79 LRHLTISGCDDDMVSFP   95 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp   95 (157)
                      |.+|++.. ...+.++|
T Consensus       620 L~~Lnl~~-~~~l~~~~  635 (889)
T KOG4658|consen  620 LIYLNLEV-TGRLESIP  635 (889)
T ss_pred             hheecccc-cccccccc
Confidence            88888876 55554443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.96  E-value=0.00036  Score=55.16  Aligned_cols=84  Identities=25%  Similarity=0.403  Sum_probs=57.2

Q ss_pred             CcceEeeecCcCCcccCcccCCCC-cccEEEeeC-cccCCC-CCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLT-SLQELKIGG-ELPSLE-EDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~-~l~~lp-~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      +++.|.+.+ ..+..++.....+. +|+.|++++ .+..+| +.+.+++|+.|+++++ .+. .+|.   ..+..+.|+.
T Consensus       117 ~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~-~l~~---~~~~~~~L~~  190 (394)
T COG4886         117 NLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLS-DLPK---LLSNLSNLNN  190 (394)
T ss_pred             ceeEEecCC-cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhh-hhhh---hhhhhhhhhh
Confidence            566677766 46777777666674 888888888 777774 3355668888888774 555 5665   2336777888


Q ss_pred             EEEecCCCCCcccCc
Q 040713           82 LTISGCDDDMVSFPP   96 (157)
Q Consensus        82 L~i~~~c~~l~~lp~   96 (157)
                      |++++  +++..+|.
T Consensus       191 L~ls~--N~i~~l~~  203 (394)
T COG4886         191 LDLSG--NKISDLPP  203 (394)
T ss_pred             eeccC--CccccCch
Confidence            88887  55655554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.94  E-value=6.3e-05  Score=59.20  Aligned_cols=79  Identities=23%  Similarity=0.441  Sum_probs=57.8

Q ss_pred             CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +.-..+++.. +.++++|++ ++.+++|+.|++++ .|+.+.+..|.  .+|..|.+.+.++++ .+|..  .+.++.+|
T Consensus        67 ~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~--~F~gL~sl  142 (498)
T KOG4237|consen   67 PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKG--AFGGLSSL  142 (498)
T ss_pred             CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhh--HhhhHHHH
Confidence            4667788877 578888864 56899999999998 88877766443  467777777767887 88876  67777777


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      +.|.+.-
T Consensus       143 qrLllNa  149 (498)
T KOG4237|consen  143 QRLLLNA  149 (498)
T ss_pred             HHHhcCh
Confidence            7666543

>PLN03150 hypothetical protein; Provisional

Probab=96.88  E-value=0.0022  Score=54.09  Aligned_cols=87  Identities=16%  Similarity=0.252  Sum_probs=63.6

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC-CCCC-CCCCCccEEEecCCCCchhhhhhccccCCC-CCc
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS-LEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHR-FSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~-lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~-l~~   78 (157)
                      .++|+.|+++++.....+|..++.+++|+.|++++ .+.. +|.. +..++|+.|+++++ .+...+|..   +.. +.+
T Consensus       441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~~---l~~~~~~  516 (623)
T PLN03150        441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN-SLSGRVPAA---LGGRLLH  516 (623)
T ss_pred             CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCC-cccccCChH---Hhhcccc
Confidence            36899999999754457898899999999999999 7764 4442 34469999999886 455578863   544 346


Q ss_pred             cCEEEEecCCCCCccc
Q 040713           79 LRHLTISGCDDDMVSF   94 (157)
Q Consensus        79 L~~L~i~~~c~~l~~l   94 (157)
                      +..+++.+ ++.+...
T Consensus       517 ~~~l~~~~-N~~lc~~  531 (623)
T PLN03150        517 RASFNFTD-NAGLCGI  531 (623)
T ss_pred             CceEEecC-CccccCC
Confidence            67888887 5544433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.81  E-value=0.00021  Score=54.85  Aligned_cols=102  Identities=25%  Similarity=0.331  Sum_probs=64.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCC-CCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEE-DGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~-~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      |.++.|+++++ .+..+.. ++.+++|+.|++++ .+..+-. ....-+.+.|.+.+ +.++ .+.    +++.+-+|..
T Consensus       307 Pkir~L~lS~N-~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~-N~iE-~LS----GL~KLYSLvn  378 (490)
T KOG1259|consen  307 PKLRRLILSQN-RIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ-NKIE-TLS----GLRKLYSLVN  378 (490)
T ss_pred             cceeEEecccc-ceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-hhHh-hhh----hhHhhhhhee
Confidence            57888888884 5655544 77889999999998 5554421 11224777887776 3554 554    4677778888


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++++  ++++.+    ..+..-|-.+.|+++.+.++|
T Consensus       379 LDl~~--N~Ie~l----deV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  379 LDLSS--NQIEEL----DEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             ccccc--cchhhH----HHhcccccccHHHHHhhcCCC
Confidence            88887  555533    222222223567777776665

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.74  E-value=0.0007  Score=57.60  Aligned_cols=106  Identities=21%  Similarity=0.218  Sum_probs=66.4

Q ss_pred             CCcceEeeecCcCCc--ccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchh--hhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLE--ALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWK--SMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~--~lp~~~~~l~~l~~   78 (157)
                      |+|++|.+.+- .+.  .+-.-..++++|..|+|++ +++.+..-+.+.+|+.|.+.+. .++.  .+-    .+-+|++
T Consensus       148 PsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnL-e~e~~~~l~----~LF~L~~  221 (699)
T KOG3665|consen  148 PSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNL-EFESYQDLI----DLFNLKK  221 (699)
T ss_pred             cccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCC-CCCchhhHH----HHhcccC
Confidence            68999999883 221  1223345899999999999 8888855455678888877653 2220  111    3668999


Q ss_pred             cCEEEEecCCCCCcccCccc-ccCCCCCCCCCccEEeeeC
Q 040713           79 LRHLTISGCDDDMVSFPPEL-KYFPEKGLPSSLLQLWIWG  117 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~~l-~~lp~~~l~~~L~~L~i~~  117 (157)
                      |+.|+|+.  .....-+.-+ +++......++|+.|+.++
T Consensus       222 L~vLDIS~--~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  222 LRVLDISR--DKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             CCeeeccc--cccccchHHHHHHHHhcccCccccEEecCC
Confidence            99999997  3222222111 2222222246888888776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=96.63  E-value=0.00077  Score=53.30  Aligned_cols=76  Identities=30%  Similarity=0.456  Sum_probs=44.3

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      +|+.|++++ +.+..+|..++.+++|+.|++.+ .+..+|... ..+.|+.|++++ .++. .+|..   ......|+++
T Consensus       141 nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i~-~l~~~---~~~~~~L~~l  214 (394)
T COG4886         141 NLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKIS-DLPPE---IELLSALEEL  214 (394)
T ss_pred             hcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-Cccc-cCchh---hhhhhhhhhh
Confidence            677777766 45666665666777777777777 666666553 445666666665 3444 45431   2223335555


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      .+++
T Consensus       215 ~~~~  218 (394)
T COG4886         215 DLSN  218 (394)
T ss_pred             hhcC
Confidence            5554

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.53  E-value=0.0016  Score=49.59  Aligned_cols=12  Identities=33%  Similarity=0.116  Sum_probs=7.1

Q ss_pred             CCccEEeeeCCh
Q 040713          108 SSLLQLWIWGCP  119 (157)
Q Consensus       108 ~~L~~L~i~~c~  119 (157)
                      ..|++|++.+|.
T Consensus       250 ~~L~~L~l~~n~  261 (319)
T cd00116         250 ISLLTLSLSCND  261 (319)
T ss_pred             CCceEEEccCCC
Confidence            456666666653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.40  E-value=0.00051  Score=54.75  Aligned_cols=80  Identities=20%  Similarity=0.257  Sum_probs=47.3

Q ss_pred             CCCcceEeeecCcCCcccC---cccCCCCcccEEEeeC-cccCCCCC---CCCCCccEEEecCCCCchhhhhhccccCCC
Q 040713            3 CAKLTRLEIYDCKRLEALP---KGLHNLTSLQELKIGG-ELPSLEED---GLPTNLHSLWIDGNKKIWKSMIERGRGFHR   75 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp---~~~~~l~~L~~L~l~~-~l~~lp~~---~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~   75 (157)
                      +|+++.|+++.. -+..+-   ...++|++|+.|+++. .+..+...   ...++|+.|.++.|.--...+- |  .+..
T Consensus       145 ~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~-~--~~~~  220 (505)
T KOG3207|consen  145 LPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQ-W--ILLT  220 (505)
T ss_pred             CCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHH-H--HHHh
Confidence            457778888772 333332   3346889999999988 55544332   2446888999988843221221 1  2334


Q ss_pred             CCccCEEEEec
Q 040713           76 FSSLRHLTISG   86 (157)
Q Consensus        76 l~~L~~L~i~~   86 (157)
                      +++|+.|++.+
T Consensus       221 fPsl~~L~L~~  231 (505)
T KOG3207|consen  221 FPSLEVLYLEA  231 (505)
T ss_pred             CCcHHHhhhhc
Confidence            56666666655

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.00  E-value=0.00017  Score=60.87  Aligned_cols=102  Identities=21%  Similarity=0.284  Sum_probs=65.9

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      |.|+.|+++++ ++.... .+..++.|++|+|+. .+..+|..+.- ..|+.|.+++ +.++ .+-    ++.++.+|+.
T Consensus       187 ~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~-tL~----gie~LksL~~  258 (1096)
T KOG1859|consen  187 PALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALT-TLR----GIENLKSLYG  258 (1096)
T ss_pred             HHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc-cHHH-hhh----hHHhhhhhhc
Confidence            46778888873 555443 567788899999988 77777764432 4588888876 4565 554    4678888999


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++++  +.+....    .+.--+....|..|++.++|
T Consensus       259 LDlsy--Nll~~hs----eL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  259 LDLSY--NLLSEHS----ELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             cchhH--hhhhcch----hhhHHHHHHHHHHHhhcCCc
Confidence            99987  3332211    11111223567777777766

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0019  Score=49.51  Aligned_cols=103  Identities=28%  Similarity=0.404  Sum_probs=61.5

Q ss_pred             CCcceEeeecCcCCcccCc--ccCCCCcccEEEeeC-ccc---------CCCCC-------C---------------CCC
Q 040713            4 AKLTRLEIYDCKRLEALPK--GLHNLTSLQELKIGG-ELP---------SLEED-------G---------------LPT   49 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~-~l~---------~lp~~-------~---------------~~~   49 (157)
                      .+|+.|+++.|.++++.--  -+.+++.|..|+|+. .+.         .+.+.       |               --+
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp  313 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP  313 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence            3677777777777664321  234666677777765 111         01110       0               115


Q ss_pred             CccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc---ccccCCCCCCCCCccEEeeeCC
Q 040713           50 NLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP---ELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        50 ~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~---~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      +|..|++++|..++...-.   .+..++.|++|.++. |-.+  +|+   .+++.      ++|.+|++.+|
T Consensus       314 ~l~~LDLSD~v~l~~~~~~---~~~kf~~L~~lSlsR-CY~i--~p~~~~~l~s~------psl~yLdv~g~  373 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQ---EFFKFNYLQHLSLSR-CYDI--IPETLLELNSK------PSLVYLDVFGC  373 (419)
T ss_pred             ceeeeccccccccCchHHH---HHHhcchheeeehhh-hcCC--ChHHeeeeccC------cceEEEEeccc
Confidence            7778888887777632222   255688888888888 7654  222   23333      68999999887

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.81  E-value=0.0036  Score=50.14  Aligned_cols=76  Identities=30%  Similarity=0.418  Sum_probs=42.5

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      .+|+.|++.+ +.++.+...+..+++|++|++++ .|..+......+.|+.|++.++ .+. .+.    ++..+++|+.+
T Consensus        95 ~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N-~i~-~~~----~~~~l~~L~~l  167 (414)
T KOG0531|consen   95 KSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGN-LIS-DIS----GLESLKSLKLL  167 (414)
T ss_pred             cceeeeeccc-cchhhcccchhhhhcchheeccccccccccchhhccchhhheeccC-cch-hcc----CCccchhhhcc
Confidence            3555666655 34555544355667777777776 5555554444445666666653 443 333    24445666666


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++.+
T Consensus       168 ~l~~  171 (414)
T KOG0531|consen  168 DLSY  171 (414)
T ss_pred             cCCc
Confidence            6665

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.81  E-value=0.0048  Score=28.24  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=16.2

Q ss_pred             CcceEeeecCcCCcccCcccCC
Q 040713            5 KLTRLEIYDCKRLEALPKGLHN   26 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~   26 (157)
                      +|++|++++| .++.+|.++++
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSS-EESEEGTTTTT
T ss_pred             CccEEECCCC-cCEeCChhhcC
Confidence            5888999987 77788877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=95.62  E-value=0.0041  Score=49.32  Aligned_cols=77  Identities=18%  Similarity=0.312  Sum_probs=36.2

Q ss_pred             CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      |+|++|++++ +.++.+. .++..+..++.|++.. +++.+..+.|.  +.|+.|++++ +.++ .+...  .+..+.+|
T Consensus       274 ~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it-~~~~~--aF~~~~~l  348 (498)
T KOG4237|consen  274 PNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD-NQIT-TVAPG--AFQTLFSL  348 (498)
T ss_pred             ccceEeccCC-CccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC-CeeE-EEecc--ccccccee
Confidence            3555555555 2444432 3444555555555555 55544443332  4555555555 2343 22221  34445555


Q ss_pred             CEEEEe
Q 040713           80 RHLTIS   85 (157)
Q Consensus        80 ~~L~i~   85 (157)
                      .+|.+-
T Consensus       349 ~~l~l~  354 (498)
T KOG4237|consen  349 STLNLL  354 (498)
T ss_pred             eeeehc
Confidence            555553

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.30  E-value=0.011  Score=25.36  Aligned_cols=17  Identities=29%  Similarity=0.628  Sum_probs=9.9

Q ss_pred             CCcceEeeecCcCCcccC
Q 040713            4 AKLTRLEIYDCKRLEALP   21 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp   21 (157)
                      ++|+.|++++|. ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            478888888874 66655

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.23  E-value=0.0081  Score=48.13  Aligned_cols=82  Identities=24%  Similarity=0.252  Sum_probs=56.0

Q ss_pred             cccCCCCcccEEEeeC-cccCCCC-CCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccc
Q 040713           22 KGLHNLTSLQELKIGG-ELPSLEE-DGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELK   99 (157)
Q Consensus        22 ~~~~~l~~L~~L~l~~-~l~~lp~-~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~   99 (157)
                      ..+..+++|+.|++.+ .+..+.. ....++|+.|++++ +.+. .+.    ++..++.|+.|++++  +.+..+. .+.
T Consensus        89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~-~i~----~l~~l~~L~~L~l~~--N~i~~~~-~~~  159 (414)
T KOG0531|consen   89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKIT-KLE----GLSTLTLLKELNLSG--NLISDIS-GLE  159 (414)
T ss_pred             cccccccceeeeeccccchhhcccchhhhhcchheeccc-cccc-ccc----chhhccchhhheecc--Ccchhcc-CCc
Confidence            3466788999999998 7777766 44556999999987 4665 554    467788899999998  5444433 222


Q ss_pred             cCCCCCCCCCccEEeeeCC
Q 040713          100 YFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus       100 ~lp~~~l~~~L~~L~i~~c  118 (157)
                      .      +.+|+.+++.++
T Consensus       160 ~------l~~L~~l~l~~n  172 (414)
T KOG0531|consen  160 S------LKSLKLLDLSYN  172 (414)
T ss_pred             c------chhhhcccCCcc
Confidence            2      256666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=0.014  Score=46.87  Aligned_cols=33  Identities=24%  Similarity=0.315  Sum_probs=18.2

Q ss_pred             CCcceEeeecCcCCcc--cCcccCCCCcccEEEeeC
Q 040713            4 AKLTRLEIYDCKRLEA--LPKGLHNLTSLQELKIGG   37 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~   37 (157)
                      ++|++|.+++|. +..  +-..+..+|+|+.|++..
T Consensus       197 ~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~  231 (505)
T KOG3207|consen  197 SHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEA  231 (505)
T ss_pred             hhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhc
Confidence            478888888884 321  111123455666665554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=93.99  E-value=0.0039  Score=42.76  Aligned_cols=83  Identities=14%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             cceEeeecCcCCcccCccc---CCCCcccEEEeeC-cccCCCCC--CCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            6 LTRLEIYDCKRLEALPKGL---HNLTSLQELKIGG-ELPSLEED--GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         6 L~~L~l~~c~~l~~lp~~~---~~l~~L~~L~l~~-~l~~lp~~--~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +..+++++|. +..+++..   .....|...+|++ .++.||+.  ..++..+.|.+.+ +.+. .+|++   +..++.|
T Consensus        29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neis-dvPeE---~Aam~aL  102 (177)
T KOG4579|consen   29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEIS-DVPEE---LAAMPAL  102 (177)
T ss_pred             hhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhh-hchHH---HhhhHHh
Confidence            4457777874 33344433   3455677778888 88888875  2345888898877 5776 78884   8889999


Q ss_pred             CEEEEecCCCCCcccCc
Q 040713           80 RHLTISGCDDDMVSFPP   96 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~   96 (157)
                      +.++++.  +.+...|.
T Consensus       103 r~lNl~~--N~l~~~p~  117 (177)
T KOG4579|consen  103 RSLNLRF--NPLNAEPR  117 (177)
T ss_pred             hhccccc--CccccchH
Confidence            9999997  44555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.82  E-value=0.25  Score=36.03  Aligned_cols=75  Identities=21%  Similarity=0.346  Sum_probs=44.7

Q ss_pred             ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC--CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED--GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~--~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      ..+++++. .+..++ .+..++.|.+|.+.+ .|..+.+.  .+.++|+.|.+.+ +.+. .+-+- ..+..++.|++|.
T Consensus        45 d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~-~l~dl-~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   45 DAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQ-ELGDL-DPLASCPKLEYLT  119 (233)
T ss_pred             ceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchh-hhhhc-chhccCCccceee
Confidence            34455552 333332 345677788888888 77776553  2446788888876 3454 33221 0245677888888


Q ss_pred             Eec
Q 040713           84 ISG   86 (157)
Q Consensus        84 i~~   86 (157)
                      +-+
T Consensus       120 ll~  122 (233)
T KOG1644|consen  120 LLG  122 (233)
T ss_pred             ecC
Confidence            877

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.81  E-value=0.017  Score=43.18  Aligned_cols=12  Identities=25%  Similarity=0.562  Sum_probs=7.2

Q ss_pred             CCCcccEEEeeC
Q 040713           26 NLTSLQELKIGG   37 (157)
Q Consensus        26 ~l~~L~~L~l~~   37 (157)
                      .+++|+.|.++.
T Consensus        63 ~Lp~LkkL~lsd   74 (260)
T KOG2739|consen   63 KLPKLKKLELSD   74 (260)
T ss_pred             CcchhhhhcccC
Confidence            455666666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.74  E-value=0.036  Score=41.52  Aligned_cols=87  Identities=17%  Similarity=0.217  Sum_probs=51.6

Q ss_pred             CCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCC-CchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCC
Q 040713           25 HNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNK-KIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFP  102 (157)
Q Consensus        25 ~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~-~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp  102 (157)
                      ..+..|+.|.+.+ .+.++...-..++|+.|.++.++ .....++.   .....++|+++++++  ++++.    +++++
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~v---l~e~~P~l~~l~ls~--Nki~~----lstl~  110 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEV---LAEKAPNLKVLNLSG--NKIKD----LSTLR  110 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCccccccccee---hhhhCCceeEEeecC--Ccccc----ccccc
Confidence            3566777777777 55544332244699999997641 12112322   133459999999998  55542    22332


Q ss_pred             CCCCCCCccEEeeeCChh
Q 040713          103 EKGLPSSLLQLWIWGCPL  120 (157)
Q Consensus       103 ~~~l~~~L~~L~i~~c~~  120 (157)
                      .-.-..+|..|.+.+|+-
T Consensus       111 pl~~l~nL~~Ldl~n~~~  128 (260)
T KOG2739|consen  111 PLKELENLKSLDLFNCSV  128 (260)
T ss_pred             hhhhhcchhhhhcccCCc
Confidence            221226788888888863

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.46  E-value=0.34  Score=31.69  Aligned_cols=76  Identities=17%  Similarity=0.375  Sum_probs=41.3

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      .+|+.+.+..  .++.++. .+.+.++|+.+.+.+.+..++...+.  ++++.+.+.+  .+. .++..  .+...++|+
T Consensus        12 ~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~--~~~-~i~~~--~F~~~~~l~   84 (129)
T PF13306_consen   12 SNLESITFPN--TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN--NLK-SIGDN--AFSNCTNLK   84 (129)
T ss_dssp             TT--EEEETS--T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS--TT--EE-TT--TTTT-TTEC
T ss_pred             CCCCEEEECC--CeeEeChhhcccccccccccccccccccceeeeecccccccccccc--ccc-ccccc--ccccccccc
Confidence            3677777764  4555654 34577788888887666666655443  3688888854  444 45544  456677888


Q ss_pred             EEEEec
Q 040713           81 HLTISG   86 (157)
Q Consensus        81 ~L~i~~   86 (157)
                      .+.+..
T Consensus        85 ~i~~~~   90 (129)
T PF13306_consen   85 NIDIPS   90 (129)
T ss_dssp             EEEETT
T ss_pred             ccccCc
Confidence            888754

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=93.17  E-value=0.0036  Score=53.26  Aligned_cols=90  Identities=14%  Similarity=0.182  Sum_probs=56.3

Q ss_pred             cCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcc
Q 040713           15 KRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVS   93 (157)
Q Consensus        15 ~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~   93 (157)
                      +.++.+...++-++.|+.|++++ ++..+....-.+.|++|+|++ +.+. .+|.-  +..+. .|+.|.+++  +.+++
T Consensus       174 N~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsy-N~L~-~vp~l--~~~gc-~L~~L~lrn--N~l~t  246 (1096)
T KOG1859|consen  174 NRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSY-NCLR-HVPQL--SMVGC-KLQLLNLRN--NALTT  246 (1096)
T ss_pred             hhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhccccccccccc-chhc-ccccc--chhhh-hheeeeecc--cHHHh
Confidence            45666666777788888999988 555554323346889999977 4565 56642  22233 388888887  54443


Q ss_pred             cCcccccCCCCCCCCCccEEeeeCC
Q 040713           94 FPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        94 lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      +- .++.+      .+|+.|+++.+
T Consensus       247 L~-gie~L------ksL~~LDlsyN  264 (1096)
T KOG1859|consen  247 LR-GIENL------KSLYGLDLSYN  264 (1096)
T ss_pred             hh-hHHhh------hhhhccchhHh
Confidence            32 33333      67777877653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.49  E-value=0.019  Score=41.65  Aligned_cols=62  Identities=19%  Similarity=0.181  Sum_probs=39.6

Q ss_pred             CCccEEEecCCCCchhhhhhccc-cCC-CCCccCEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCChhH
Q 040713           49 TNLHSLWIDGNKKIWKSMIERGR-GFH-RFSSLRHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCPLI  121 (157)
Q Consensus        49 ~~L~~L~i~~c~~l~~~lp~~~~-~l~-~l~~L~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~~l  121 (157)
                      ++++.|.+.+|..+.    +||- .++ -.++|+.|+|++ |+.+++--- .|..+      ++|+.|.+++.+..
T Consensus       125 ~~i~~l~l~~ck~~d----D~~L~~l~~~~~~L~~L~lsg-C~rIT~~GL~~L~~l------knLr~L~l~~l~~v  189 (221)
T KOG3864|consen  125 RSIKSLSLANCKYFD----DWCLERLGGLAPSLQDLDLSG-CPRITDGGLACLLKL------KNLRRLHLYDLPYV  189 (221)
T ss_pred             chhhhheeccccchh----hHHHHHhcccccchheeeccC-CCeechhHHHHHHHh------hhhHHHHhcCchhh
Confidence            578888888886654    2210 122 357899999999 887765310 22333      68888888887643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=91.36  E-value=0.04  Score=44.21  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=17.8

Q ss_pred             CCcceEeeecCcCCcc--cCcccCCCCcccEEEee
Q 040713            4 AKLTRLEIYDCKRLEA--LPKGLHNLTSLQELKIG   36 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~   36 (157)
                      ++|+.|.+.+|..+..  +-......+.|+.|+++
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  222 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLS  222 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheeccc
Confidence            4566666666655543  22333455666666654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.41  E-value=0.18  Score=36.68  Aligned_cols=65  Identities=18%  Similarity=0.320  Sum_probs=43.7

Q ss_pred             CccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHH
Q 040713           50 NLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAE  123 (157)
Q Consensus        50 ~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~  123 (157)
                      .++.++-+++.-..    ++.+.+..+++++.|.+.+ |..+...  .|+.+..  +.++|+.|+|++|+.+++
T Consensus       102 ~IeaVDAsds~I~~----eGle~L~~l~~i~~l~l~~-ck~~dD~--~L~~l~~--~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  102 KIEAVDASDSSIMY----EGLEHLRDLRSIKSLSLAN-CKYFDDW--CLERLGG--LAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             eEEEEecCCchHHH----HHHHHHhccchhhhheecc-ccchhhH--HHHHhcc--cccchheeeccCCCeech
Confidence            45566666652221    2111467788899999999 8876553  4555543  558999999999997763

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.98  E-value=0.015  Score=44.38  Aligned_cols=83  Identities=22%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      +.++|+..+| .+..+. ....|+.|+.|.++- .|+++..-.--++|+.|++..+ .+. .+.+. .-+.++++|+.|.
T Consensus        20 ~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~-sldEL-~YLknlpsLr~LW   94 (388)
T KOG2123|consen   20 NVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIE-SLDEL-EYLKNLPSLRTLW   94 (388)
T ss_pred             HhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccc-cHHHH-HHHhcCchhhhHh
Confidence            4567788887 444332 235788899999987 7776654222256777766542 232 33221 0267788888888


Q ss_pred             EecCCCCCcc
Q 040713           84 ISGCDDDMVS   93 (157)
Q Consensus        84 i~~~c~~l~~   93 (157)
                      +.. .|....
T Consensus        95 L~E-NPCc~~  103 (388)
T KOG2123|consen   95 LDE-NPCCGE  103 (388)
T ss_pred             hcc-CCcccc
Confidence            876 555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.82  E-value=0.069  Score=41.27  Aligned_cols=75  Identities=17%  Similarity=0.290  Sum_probs=43.0

Q ss_pred             CcceEeeecCcCCcccCc---ccCCCCcccEEEeeC-----cccCCCCCCCCCCccEEEecCCCCch-hhhhhccccCCC
Q 040713            5 KLTRLEIYDCKRLEALPK---GLHNLTSLQELKIGG-----ELPSLEEDGLPTNLHSLWIDGNKKIW-KSMIERGRGFHR   75 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~---~~~~l~~L~~L~l~~-----~l~~lp~~~~~~~L~~L~i~~c~~l~-~~lp~~~~~l~~   75 (157)
                      .++.|++.+ +.+..+.+   .+.++|.|+.|+|+.     .|.++|.  -..+|+.|.+.+. .+. .....   .+..
T Consensus        72 ~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~--p~~nl~~lVLNgT-~L~w~~~~s---~l~~  144 (418)
T KOG2982|consen   72 DVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPL--PLKNLRVLVLNGT-GLSWTQSTS---SLDD  144 (418)
T ss_pred             hhhhhhccc-chhccHHHHHHHHhcCccceEeeccCCcCCCccccCcc--cccceEEEEEcCC-CCChhhhhh---hhhc
Confidence            455566666 24443332   346899999999998     3444541  2268888888663 331 01111   2445


Q ss_pred             CCccCEEEEec
Q 040713           76 FSSLRHLTISG   86 (157)
Q Consensus        76 l~~L~~L~i~~   86 (157)
                      ++.+++|+++.
T Consensus       145 lP~vtelHmS~  155 (418)
T KOG2982|consen  145 LPKVTELHMSD  155 (418)
T ss_pred             chhhhhhhhcc
Confidence            66667776665

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.69  E-value=0.16  Score=40.80  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             CCcceEeeecCcCCcccC--cccCCCCcccEEEeeC-c-ccC--CCC-CCCCCCccEEEecCCCCchhh-hhhccccCCC
Q 040713            4 AKLTRLEIYDCKRLEALP--KGLHNLTSLQELKIGG-E-LPS--LEE-DGLPTNLHSLWIDGNKKIWKS-MIERGRGFHR   75 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~-~-l~~--lp~-~~~~~~L~~L~i~~c~~l~~~-lp~~~~~l~~   75 (157)
                      ++|+.|.+++|..+...-  .--.+.+.|+.+++.. . +..  +.. ...-+.|+.|.++.|..++.. +-.....-.+
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            456666666665443221  0012455555555554 1 110  100 011146777777777555411 0000001234


Q ss_pred             CCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713           76 FSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIA  122 (157)
Q Consensus        76 l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~  122 (157)
                      +..|..+.+.+ |+.+..-  .++.+.   ..++|+.+++.+|....
T Consensus       400 ~~~l~~lEL~n-~p~i~d~--~Le~l~---~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  400 LEGLEVLELDN-CPLITDA--TLEHLS---ICRNLERIELIDCQDVT  440 (483)
T ss_pred             ccccceeeecC-CCCchHH--HHHHHh---hCcccceeeeechhhhh
Confidence            56677788888 7765431  222221   12578888888887654

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.87  E-value=0.3  Score=22.99  Aligned_cols=16  Identities=25%  Similarity=0.814  Sum_probs=13.4

Q ss_pred             CCCcceEeeecCcCCc
Q 040713            3 CAKLTRLEIYDCKRLE   18 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~   18 (157)
                      +++|++|++++|.+++
T Consensus         1 c~~L~~L~l~~C~~it   16 (26)
T smart00367        1 CPNLRELDLSGCTNIT   16 (26)
T ss_pred             CCCCCEeCCCCCCCcC
Confidence            4789999999998765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=88.53  E-value=0.2  Score=38.82  Aligned_cols=83  Identities=20%  Similarity=0.193  Sum_probs=54.6

Q ss_pred             CCcceEeeecCcCCcccC--ccc-CCCCcccEEEeeC--cccC--CCCCCCCCCccEEEecCCCCchhhhhhccccCCCC
Q 040713            4 AKLTRLEIYDCKRLEALP--KGL-HNLTSLQELKIGG--ELPS--LEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRF   76 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp--~~~-~~l~~L~~L~l~~--~l~~--lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l   76 (157)
                      ++|+.|++++|..--...  ..+ ...++|..|++++  .++.  +..-...+.|++|.++.|..+....--   .+...
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~---~l~s~  362 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL---ELNSK  362 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee---eeccC
Confidence            578999999985321111  112 4789999999998  4442  111122358999999999887421111   36788


Q ss_pred             CccCEEEEecCCC
Q 040713           77 SSLRHLTISGCDD   89 (157)
Q Consensus        77 ~~L~~L~i~~~c~   89 (157)
                      ++|.+|++.++++
T Consensus       363 psl~yLdv~g~vs  375 (419)
T KOG2120|consen  363 PSLVYLDVFGCVS  375 (419)
T ss_pred             cceEEEEeccccC
Confidence            9999999999443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=88.44  E-value=1.2  Score=32.64  Aligned_cols=59  Identities=15%  Similarity=0.336  Sum_probs=38.0

Q ss_pred             CCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCC-CCCccCEEEEecCCCCCc
Q 040713           27 LTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFH-RFSSLRHLTISGCDDDMV   92 (157)
Q Consensus        27 l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~-~l~~L~~L~i~~~c~~l~   92 (157)
                      +.+...+++++ .+..++.-..++.|.+|.+.+ +.+. .+.+   .+. -+++|+.|.+.+  +.+.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~n-NrIt-~I~p---~L~~~~p~l~~L~Ltn--Nsi~  101 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNN-NRIT-RIDP---DLDTFLPNLKTLILTN--NSIQ  101 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecC-Ccce-eecc---chhhhccccceEEecC--cchh
Confidence            34566778887 555544323346899999976 5666 5544   243 467899999987  4444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=88.37  E-value=0.088  Score=36.27  Aligned_cols=59  Identities=15%  Similarity=0.236  Sum_probs=42.8

Q ss_pred             CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ..|+..++++ +.++ .+|+.  ....++.++.|++..  +.+..+|+++..+      +.|+.+.++.++
T Consensus        53 ~el~~i~ls~-N~fk-~fp~k--ft~kf~t~t~lNl~~--neisdvPeE~Aam------~aLr~lNl~~N~  111 (177)
T KOG4579|consen   53 YELTKISLSD-NGFK-KFPKK--FTIKFPTATTLNLAN--NEISDVPEELAAM------PALRSLNLRFNP  111 (177)
T ss_pred             ceEEEEeccc-chhh-hCCHH--Hhhccchhhhhhcch--hhhhhchHHHhhh------HHhhhcccccCc
Confidence            4677888887 5777 77764  334566788888887  7677777666666      688888888876

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=86.28  E-value=0.24  Score=38.87  Aligned_cols=37  Identities=32%  Similarity=0.507  Sum_probs=21.4

Q ss_pred             CCCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-ccc
Q 040713            3 CAKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELP   40 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~   40 (157)
                      +|.|++|+++++ -+.     .+-.-+.+...|+.|++.| .+.
T Consensus        91 ~~~L~~ldLSDN-A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   91 CPKLQKLDLSDN-AFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             CCceeEeecccc-ccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            357788888774 222     1112234677777777777 443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.14  E-value=0.026  Score=43.10  Aligned_cols=79  Identities=25%  Similarity=0.301  Sum_probs=50.1

Q ss_pred             CCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc--ccccCCC
Q 040713           27 LTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP--ELKYFPE  103 (157)
Q Consensus        27 l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~--~l~~lp~  103 (157)
                      +.+.+.|+.++ .|..+.--.-.+.|+.|.++- ++++ ++.    .+...+.|++|++..  +.+.+|-+  .|+.+  
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSv-NkIs-sL~----pl~rCtrLkElYLRk--N~I~sldEL~YLknl--   87 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSV-NKIS-SLA----PLQRCTRLKELYLRK--NCIESLDELEYLKNL--   87 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeec-cccc-cch----hHHHHHHHHHHHHHh--cccccHHHHHHHhcC--
Confidence            55667778887 555443212224788888865 5665 554    256778899999987  54555432  33444  


Q ss_pred             CCCCCCccEEeeeCCh
Q 040713          104 KGLPSSLLQLWIWGCP  119 (157)
Q Consensus       104 ~~l~~~L~~L~i~~c~  119 (157)
                          ++|+.|++..+|
T Consensus        88 ----psLr~LWL~ENP   99 (388)
T KOG2123|consen   88 ----PSLRTLWLDENP   99 (388)
T ss_pred             ----chhhhHhhccCC
Confidence                688888887754

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=83.09  E-value=6.8  Score=25.29  Aligned_cols=78  Identities=19%  Similarity=0.300  Sum_probs=42.4

Q ss_pred             cCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccC
Q 040713           24 LHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYF  101 (157)
Q Consensus        24 ~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~l  101 (157)
                      +.+.++|+.+.+.+.+..++...+.  ++|+.+.+.+  .+. .++..  .+.+.++|+.+.+.+          .+..+
T Consensus         8 F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~--~~~-~i~~~--~F~~~~~l~~i~~~~----------~~~~i   72 (129)
T PF13306_consen    8 FYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPN--NLT-SIGDN--AFSNCKSLESITFPN----------NLKSI   72 (129)
T ss_dssp             TTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESS--TTS-CE-TT--TTTT-TT-EEEEETS----------TT-EE
T ss_pred             HhCCCCCCEEEECCCeeEeChhhcccccccccccccc--ccc-cccee--eeecccccccccccc----------ccccc
Confidence            4567788988887755666665554  4799999865  365 66665  677777899998864          22223


Q ss_pred             CCCCC--CCCccEEeee
Q 040713          102 PEKGL--PSSLLQLWIW  116 (157)
Q Consensus       102 p~~~l--~~~L~~L~i~  116 (157)
                      +...+  ..+|+.+.+.
T Consensus        73 ~~~~F~~~~~l~~i~~~   89 (129)
T PF13306_consen   73 GDNAFSNCTNLKNIDIP   89 (129)
T ss_dssp             -TTTTTT-TTECEEEET
T ss_pred             ccccccccccccccccC
Confidence            32211  2577777774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	157
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-04

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 17/93 (18%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQEL-----------KIGGELPSLEEDGLPTNL 51
              LT +E+Y+C  L  LP  L  L  +Q +           ++  +  +L +  +   +
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 52  HSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTI 84
             ++I  N       ++          ++ L +
Sbjct: 308 QIIYIGYNN------LKTFPVETSLQKMKKLGM 334

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 6e-06
 Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 3   CAKLTRLEIYDCKRLEALPKGL-HNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNK 60
            ++L  L +    R+ +L   +      L+ L +    L ++    +  +L  L +  N 
Sbjct: 75  LSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPM-ASLRHLDLSFND 132

Query: 61  KIWKSMIERGRGFHRFSSLRHLTISG 86
             +   +   + F   + L  L +S 
Sbjct: 133 --FDV-LPVCKEFGNLTKLTFLGLSA 155

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.8 bits (104), Expect = 7e-06
 Identities = 19/144 (13%), Positives = 31/144 (21%), Gaps = 41/144 (28%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG------------------------E 38
            +    L       L      L                                      
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 39  LPSLEEDGLPTNLHSLWIDGNK--KIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP 96
              L ED       +L +      +             R S L+H+TI      ++  P 
Sbjct: 71  TADLLEDATQPGRVALELRSVPLPQFPDQ-------AFRLSHLQHMTIDAA--GLMELPD 121

Query: 97  ELKYFPEKGLPSSLLQLWIWGCPL 120
            ++ F      + L  L +   PL
Sbjct: 122 TMQQF------AGLETLTLARNPL 139

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 16/123 (13%)

Query: 5   KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSL-EEDGLPTNLHSLWIDGNKKI 62
            L  + I     L  LP  +     L+ L +    L +L         L  L I    ++
Sbjct: 105 HLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL 163

Query: 63  WK-----SMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWG 117
            +     +  +         +L+ L +      + S P  +          +L  L I  
Sbjct: 164 TELPEPLASTDASGEHQGLVNLQSLRLEWT--GIRSLPASI------ANLQNLKSLKIRN 215

Query: 118 CPL 120
            PL
Sbjct: 216 SPL 218

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 7/65 (10%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-----ELPSLEEDGLPTNLHSLWID 57
             KL  L++  C  L   P        L+ L +        LP   +    T L  L + 
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP--LDIHRLTQLEKLDLR 285

Query: 58  GNKKI 62
           G   +
Sbjct: 286 GCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 31/129 (24%), Positives = 45/129 (34%), Gaps = 27/129 (20%)

Query: 3   CAKLTRLEIYDCKRLEALPKGL---------HNLTSLQELKIGG----ELPSLEEDGLPT 49
             +L  L I  C  L  LP+ L           L +LQ L++       LP         
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP--ASIANLQ 206

Query: 50  NLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSS 109
           NL SL I  +      +   G   H    L  L + GC   + ++PP        G  + 
Sbjct: 207 NLKSLKIRNSP-----LSALGPAIHHLPKLEELDLRGC-TALRNYPPIF------GGRAP 254

Query: 110 LLQLWIWGC 118
           L +L +  C
Sbjct: 255 LKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.7 bits (96), Expect = 6e-05
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-----ELPSLEEDGLPTNLHSLWID 57
            A L RL + DC  L  LP  +H LT L++L + G      LP             + + 
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP--SLIAQLPANCIILVP 309

Query: 58  GN 59
            +
Sbjct: 310 PH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 40.3 bits (95), Expect = 8e-05
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGGELPSLEEDGLPTNL 51
             +L +L++  C  L  LP  +  L +   + +   L +  +   P   
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.7 bits (103), Expect = 7e-06
 Identities = 19/130 (14%), Positives = 42/130 (32%), Gaps = 24/130 (18%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQEL-----------KIGGELPSL-EEDGLPTN 50
              LT +E+Y+C  +  LP  L++L  LQ L           ++  +   L +++     
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 51  LHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSL 110
           +   ++  N  +            +   L  L              ++++    G    L
Sbjct: 550 IQIFYMGYN-NL--EEFPASASLQKMVKLGLLDCVHN---------KVRHLEAFGTNVKL 597

Query: 111 LQLWIWGCPL 120
             L +    +
Sbjct: 598 TDLKLDYNQI 607

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 43.7 bits (103), Expect = 7e-06
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 5   KLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEE---DGLPTNLHSLWIDGN 59
            L  L +     L  +       + +L+ L +    L +L+E     L   L  L +  N
Sbjct: 65  NLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL-QALEVLLLYNN 122

Query: 60  KKIWKSMIERGRGFHRFSSLRHLTISGC 87
             I   +++R   F   + L+ L +S  
Sbjct: 123 -HI--VVVDRN-AFEDMAQLQKLYLSQN 146

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 22/119 (18%), Positives = 40/119 (33%), Gaps = 21/119 (17%)

Query: 5   KLTRLEIYDCKRLEALPKGL-HNLTSLQELKIGG--ELPSLEED---GLPTNLHSLWIDG 58
            ++R+ +     L+ L     +NL+ +  ++I     L  ++ D    LP  L  L I  
Sbjct: 56  NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFN 114

Query: 59  NKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPE---KGLPSSLLQLW 114
              +   M       +       L I+          P +   P    +GL +  L L 
Sbjct: 115 T-GL--KMFPDLTKVYSTDIFFILEITDN--------PYMTSIPVNAFQGLCNETLTLK 162

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 25/123 (20%), Positives = 44/123 (35%), Gaps = 20/123 (16%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLT--SLQELKIGGELPSLEEDGLPTNLHSLWIDGNK 60
           C +     +  CK ++ +P    +     L E  +   +PS     LP N+  +++  + 
Sbjct: 10  CHQEEDFRV-TCKDIQRIPSLPPSTQTLKLIETHLR-TIPSHAFSNLP-NISRIYVSIDV 66

Query: 61  KIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPE---KGLPSSLLQLWIWG 117
            +    +E    F+  S + H+ I             L Y      K LP  L  L I+ 
Sbjct: 67  TL--QQLESH-SFYNLSKVTHIEIRNT--------RNLTYIDPDALKELP-LLKFLGIFN 114

Query: 118 CPL 120
             L
Sbjct: 115 TGL 117

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 13/95 (13%)

Query: 5   KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIW 63
            L  L++ +   L++       L  LQEL I   +L +L +  L   L  + I  N ++ 
Sbjct: 432 TLEVLDVSNN-NLDSFSL---FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN-QL- 485

Query: 64  KSMIERGRGFHRFSSLRHLTISG----CDDDMVSF 94
              +  G  F R +SL+ + +      C    + +
Sbjct: 486 -KSVPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDY 518

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 20/112 (17%)

Query: 5   KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIW 63
            LT L+I        +P        ++ L +    +  + +  +P  L  L +  N    
Sbjct: 388 NLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVV-KTCIPQTLEVLDVSNNN--- 442

Query: 64  KSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWI 115
              ++          L+ L IS           +LK  P+  L   LL + I
Sbjct: 443 ---LD--SFSLFLPRLQELYISRN---------KLKTLPDASLFPVLLVMKI 480

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 5   KLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEED---GLPTNLHSLWIDGN 59
            L  LE++D   L  +P G    L+ L+EL +    + S+       +P +L  L +   
Sbjct: 124 SLNTLELFDN-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP-SLMRLDLGEL 181

Query: 60  KKIWKSMIERGRGFHRFSSLRHLTISGC 87
           KK+    I  G  F    +L++L +  C
Sbjct: 182 KKL--EYISEG-AFEGLFNLKYLNLGMC 206

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 14/89 (15%)

Query: 5   KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG------ELPSLEEDGLPTNLHSLWIDG 58
            L RL I            L  LTSL  L I         L  +    L   ++S+ +  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN--TL-PKVNSIDLSY 145

Query: 59  NKKIWKSMIERGRGFHRFSSLRHLTISGC 87
           N  I  + I           L+ L I   
Sbjct: 146 NGAI--TDIM---PLKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 14/87 (16%)

Query: 5   KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-----ELPSLEEDGLPTNLHSLWIDGN 59
            LT L+I      +++   ++ L  +  + +       ++  L+   L   L SL I  +
Sbjct: 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLK--TL-PELKSLNIQFD 169

Query: 60  KKIWKSMIERGRGFHRFSSLRHLTISG 86
                  +   RG   F  L  L    
Sbjct: 170 G------VHDYRGIEDFPKLNQLYAFS 190

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 5   KLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKI 62
           KL  L I   + ++ L          L+ L +   +L  +       NL  L +  N   
Sbjct: 46  KLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLVKISCHPT-VNLKHLDLSFNA-- 101

Query: 63  WKSMIERGRGFHRFSSLRHLTISGC 87
           + + +   + F   S L+ L +S  
Sbjct: 102 FDA-LPICKEFGNMSQLKFLGLSTT 125

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 26/128 (20%)

Query: 5   KLTRLEIYDCKRLEALPKGL-HNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKI 62
            L +L+I          KG      SL  L +    L       LP  +  L +  NK  
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-- 432

Query: 63  WKSMIER-GRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPS--SLLQLWIWG-- 117
               I+   +   +  +L+ L ++           +LK  P+       SL ++W+    
Sbjct: 433 ----IKSIPKQVVKLEALQELNVASN---------QLKSVPDGIFDRLTSLQKIWLHTNP 479

Query: 118 ----CPLI 121
               CP I
Sbjct: 480 WDCSCPRI 487

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 9e-05
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 5   KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNK 60
           +L  LE+    +L +LP     L  L         LP+     LP+ L  LWI GN+
Sbjct: 82  ELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQ 132

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.1 bits (94), Expect = 1e-04
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 18/122 (14%)

Query: 5   KLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEED---GLPTNLHSLWIDGN 59
            LT L I  C  L A+P   + +L  L+ L +    + ++E      L   L  + + G 
Sbjct: 225 NLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL-RLQEIQLVGG 282

Query: 60  KKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP 119
            ++  +++E    F   + LR L +SG    + +    +  F    +  +L  L +   P
Sbjct: 283 -QL--AVVEPY-AFRGLNYLRVLNVSGN--QLTTLEESV--F--HSVG-NLETLILDSNP 331

Query: 120 LI 121
           L 
Sbjct: 332 LA 333

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 28/135 (20%), Positives = 45/135 (33%), Gaps = 38/135 (28%)

Query: 5   KLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNK-- 60
            L  L + + K +  +  G    L  L+ L +   +L  L E  +P  L  L +  N+  
Sbjct: 77  NLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEIT 134

Query: 61  ---------------------KIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELK 99
                                 +  S IE G  F     L ++ I+            + 
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENG-AFQGMKKLSYIRIADT---------NIT 184

Query: 100 YFPEKGLPSSLLQLW 114
             P +GLP SL +L 
Sbjct: 185 TIP-QGLPPSLTELH 198

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 14/88 (15%)

Query: 5   KLTRLEIYDCK-RLEALPKG-LHNLTSLQELKIGG----ELPSLEEDGLPTNLHSLWIDG 58
           ++  +E+     +   +  G    +  L  ++I       +P     GLP +L  L +DG
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP----QGLPPSLTELHLDG 201

Query: 59  NKKIWKSMIERGRGFHRFSSLRHLTISG 86
           N KI  + ++        ++L  L +S 
Sbjct: 202 N-KI--TKVDAA-SLKGLNNLAKLGLSF 225

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 14/84 (16%), Positives = 37/84 (44%), Gaps = 9/84 (10%)

Query: 5   KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIW 63
            + ++   +   ++++ +G+  L ++ +L + G +L  ++      NL  L++D NK   
Sbjct: 44  SIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK--- 98

Query: 64  KSMIERGRGFHRFSSLRHLTISGC 87
              I+          L+ L++   
Sbjct: 99  ---IKDLSSLKDLKKLKSLSLEHN 119

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 16/150 (10%), Positives = 49/150 (32%), Gaps = 21/150 (14%)

Query: 4   AKLTRLEIYDCK--RLEALPKG--LHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG 58
              +R++  D K   ++ +       +  +L+ L +    +  ++   +   L +L +  
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200

Query: 59  NKKIWKSMIER-GRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWG 117
           NK      +   G  F   + +  +++      +V     L++        +L    + G
Sbjct: 201 NK------LAFMGPEFQSAAGVTWISLRNN--KLVLIEKALRFSQ------NLEHFDLRG 246

Query: 118 CPLIAEKCRKDGGQYWDLLTHIPSVSIANI 147
                    +D       +  +   ++  +
Sbjct: 247 NGFHCG-TLRDFFSKNQRVQTVAKQTVKKL 275

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 37.9 bits (88), Expect = 7e-04
 Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 1   MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDG 58
           +  AKL  L++    +L  +     +   +  + +   +L  +E+      NL    + G
Sbjct: 188 VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

Query: 59  NKKIWKSMIERGRGFHRFSSLRHLTIS 85
           N   +     R   F +   ++ +   
Sbjct: 247 NG--FHCGTLR-DFFSKNQRVQTVAKQ 270

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 16/83 (19%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 5   KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIW 63
            L  L + + K ++ +   + NLT L  L +   ++  +      T+LH      N+   
Sbjct: 156 GLNYLTVTESK-VKDVT-PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQ--- 210

Query: 64  KSMIERGRGFHRFSSLRHLTISG 86
              I         + L  L I  
Sbjct: 211 ---ITDITPVANMTRLNSLKIGN 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 5   KLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKI 62
            L  L + + K +  + +     L  LQ+L I    L  +    LP++L  L I  N +I
Sbjct: 79  HLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDN-RI 135

Query: 63  WKSMIERGRGFHRFSSLRHLTISG 86
               + +G  F    ++  + + G
Sbjct: 136 --RKVPKG-VFSGLRNMNCIEMGG 156

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 19/122 (15%)

Query: 5   KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL---PTNLHSLWIDGNK 60
            L  L++     +  +      L  L+ L      L  + E  +     NL  L I    
Sbjct: 79  SLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT- 136

Query: 61  KIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLP--SSLLQLWIWGC 118
                +   G  F+  SSL  L ++G            + F         +L  L +  C
Sbjct: 137 HT--RVAFNGI-FNGLSSLEVLKMAGN--------SFQENFLPDIFTELRNLTFLDLSQC 185

Query: 119 PL 120
            L
Sbjct: 186 QL 187

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 14/111 (12%)

Query: 3   CAKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEE---DGLPTNLHSLWID 57
              LT L++  C +LE L     ++L+SLQ L +      SL+      L  +L  L   
Sbjct: 174 LRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN-SLQVLDYS 231

Query: 58  GNKKIWKSMIERGRGFHRFSSLRHLTISG----CDDDMVSFPPELKYFPEK 104
            N  I     ++    H  SSL  L ++     C  +  SF   +K   + 
Sbjct: 232 LN-HI--MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKK 61
              L RL+I   K +  +   L  LT+L+ L     ++  +   G+ TNL  L ++GN+ 
Sbjct: 176 LTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQ- 232

Query: 62  IWKSMIERGRGFHRFSSLRHLTISGC 87
                ++        ++L  L ++  
Sbjct: 233 -----LKDIGTLASLTNLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 9/86 (10%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKK 61
              LT L++ + + +  L   L  LT L ELK+G  ++ ++      T L +L ++ N+ 
Sbjct: 242 LTNLTDLDLANNQ-ISNLA-PLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ- 298

Query: 62  IWKSMIERGRGFHRFSSLRHLTISGC 87
                +E         +L +LT+   
Sbjct: 299 -----LEDISPISNLKNLTYLTLYFN 319

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 38.3 bits (89), Expect = 4e-04
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 7/62 (11%)

Query: 5   KLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-----ELPSLEEDGLPTNLHSLWIDG 58
            L ++EI     LE +      NL  L E++I        +       LP NL  L I  
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP-NLQYLLISN 113

Query: 59  NK 60
             
Sbjct: 114 TG 115

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 13/86 (15%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKK 61
              + ++   +   ++++ +G+  L ++ +L + G +L  ++      NL  L++D NK 
Sbjct: 45  LNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENK- 101

Query: 62  IWKSMIERGRGFHRFSSLRHLTISGC 87
                ++          L+ L++   
Sbjct: 102 -----VKDLSSLKDLKKLKSLSLEHN 122

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.1 bits (89), Expect = 6e-04
 Identities = 26/119 (21%), Positives = 37/119 (31%), Gaps = 24/119 (20%)

Query: 3   CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKK 61
              L  L    C  L  LP+   +L SL         L       LP  L  L +  N+ 
Sbjct: 90  PPHLESLVA-SCNSLTELPELPQSLKSLLVDNNNLKALSD-----LPPLLEYLGVSNNQ- 142

Query: 62  IWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPL 120
                +E+       S L+ + +             LK  P+  LP SL  +      L
Sbjct: 143 -----LEKLPELQNSSFLKIIDVDNN---------SLKKLPD--LPPSLEFIAAGNNQL 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 4   AKLTRLEIYDC--KRLEALPKGLHNLTSLQELKIGG-ELPSLEE---DGLPTNLHSLWID 57
             L  L   D    +L++LP     L +L  L +    L SL      GL   L  L++ 
Sbjct: 74  GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL-GELQELYLK 132

Query: 58  GNK 60
           GN+
Sbjct: 133 GNE 135

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 37.3 bits (87), Expect = 9e-04
 Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 1   MPCAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDG 58
           +  AKL  L++    +L  +     +   +  + +   +L  +E+      NL    + G
Sbjct: 188 VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

Query: 59  NKKIWKSMIERGRGFHRFSSLRHLTIS 85
           N   +     R   F +   ++ +   
Sbjct: 247 NG--FHCGTLR-DFFSKNQRVQTVAKQ 270

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	157
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.29
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.23
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.1
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.08
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.02
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.01
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.0
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.99
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.99
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.99
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.98
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.97
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.97
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.96
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.95
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.94
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.94
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.93
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.92
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.91
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.9
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.86
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.84
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.83
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.83
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.82
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.82
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.82
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.82
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.82
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.81
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.81
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.8
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.79
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.79
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.78
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.78
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.78
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.78
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.77
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.75
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.73
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.73
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.73
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.73
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.73
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.72
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.72
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.7
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.7
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.69
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.69
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.69
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.69
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.69
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.69
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.67
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.66
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.65
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.65
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.63
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.63
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.61
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.6
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.58
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.58
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.58
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.58
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.57
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.56
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.56
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.52
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.48
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.45
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.44
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.43
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.36
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.33
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.28
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.28
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.99
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.94
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.91
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.86
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.48
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.29
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.28
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.15
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.98
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.92
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.69
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.37
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.09
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.0
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.88
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.85
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.54
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.12
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	91.6
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	90.45
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	89.75
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.38

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.35  E-value=4.7e-12  Score=96.60  Aligned_cols=107  Identities=21%  Similarity=0.345  Sum_probs=63.8

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      ++|++|++++| .++.+|.++..+++|++|++++ .+..+|.. +..++|+.|++++|.... .+|.   .+..+++|++
T Consensus       183 ~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~-~~p~---~~~~l~~L~~  257 (328)
T 4fcg_A          183 VNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR-NYPP---IFGGRAPLKR  257 (328)
T ss_dssp             TTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCC-BCCC---CTTCCCCCCE
T ss_pred             CCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchh-hhHH---HhcCCCCCCE
Confidence            45555555553 4445555556666666666666 55555442 123466667776665554 5555   3666667777


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIA  122 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~  122 (157)
                      |++++ |+..+.+|..+..+      ++|+.|++++|+.+.
T Consensus       258 L~L~~-n~~~~~~p~~~~~l------~~L~~L~L~~n~~~~  291 (328)
T 4fcg_A          258 LILKD-CSNLLTLPLDIHRL------TQLEKLDLRGCVNLS  291 (328)
T ss_dssp             EECTT-CTTCCBCCTTGGGC------TTCCEEECTTCTTCC
T ss_pred             EECCC-CCchhhcchhhhcC------CCCCEEeCCCCCchh
Confidence            77776 66666666555555      577777777776543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.29  E-value=1.2e-11  Score=94.37  Aligned_cols=130  Identities=25%  Similarity=0.338  Sum_probs=65.8

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCC----------CCCccEEEecCCCCchhhhhhccc
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGL----------PTNLHSLWIDGNKKIWKSMIERGR   71 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~----------~~~L~~L~i~~c~~l~~~lp~~~~   71 (157)
                      ++|++|++++| .+..+|..+.++++|++|++++  .+..+|....          .++|+.|++++| .+. .+|.   
T Consensus       127 ~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~-~lp~---  200 (328)
T 4fcg_A          127 AGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR-SLPA---  200 (328)
T ss_dssp             TTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC-CCCG---
T ss_pred             CCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC-cchH---
Confidence            46667777664 4556666666666666666665  3344443210          345666666553 444 4544   


Q ss_pred             cCCCCCccCEEEEecCCCCCcccCcccccC-----------------CCC-CCCCCccEEeeeCChhHHHhhccCCCCCc
Q 040713           72 GFHRFSSLRHLTISGCDDDMVSFPPELKYF-----------------PEK-GLPSSLLQLWIWGCPLIAEKCRKDGGQYW  133 (157)
Q Consensus        72 ~l~~l~~L~~L~i~~~c~~l~~lp~~l~~l-----------------p~~-~l~~~L~~L~i~~c~~l~~~~~~~~~~~~  133 (157)
                      .+..+++|++|++++  +.+..+|..+..+                 |.. +-.++|+.|++++|.....     ....+
T Consensus       201 ~l~~l~~L~~L~L~~--N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-----~p~~~  273 (328)
T 4fcg_A          201 SIANLQNLKSLKIRN--SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-----LPLDI  273 (328)
T ss_dssp             GGGGCTTCCEEEEES--SCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB-----CCTTG
T ss_pred             hhcCCCCCCEEEccC--CCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh-----cchhh
Confidence            245555555555555  2333343322222                 110 1125677777776654321     11224


Q ss_pred             ccccccceeEECc
Q 040713          134 DLLTHIPSVSIAN  146 (157)
Q Consensus       134 ~~i~~l~~l~i~~  146 (157)
                      ..+.++..+.+.+
T Consensus       274 ~~l~~L~~L~L~~  286 (328)
T 4fcg_A          274 HRLTQLEKLDLRG  286 (328)
T ss_dssp             GGCTTCCEEECTT
T ss_pred             hcCCCCCEEeCCC
Confidence            4455666666655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.23  E-value=1.2e-10  Score=84.38  Aligned_cols=102  Identities=22%  Similarity=0.304  Sum_probs=77.0

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..+ |..+..+++|+.|++++ .+..++...+  .++|+.|+++++ .++ .++..  .+..+++|
T Consensus        40 ~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~--~~~~l~~L  114 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN-QLT-VLPSA--VFDRLVHL  114 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC-cCC-ccChh--HhCcchhh
Confidence            58999999986 55555 66778899999999999 8888887543  468999999885 676 66654  46788999


Q ss_pred             CEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           80 RHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      ++|++++  +.+..+|..+..+      ++|+.|+++++
T Consensus       115 ~~L~Ls~--N~l~~lp~~~~~l------~~L~~L~L~~N  145 (229)
T 3e6j_A          115 KELFMCC--NKLTELPRGIERL------THLTHLALDQN  145 (229)
T ss_dssp             CEEECCS--SCCCSCCTTGGGC------TTCSEEECCSS
T ss_pred             CeEeccC--CcccccCcccccC------CCCCEEECCCC
Confidence            9999987  5677777655444      56777777665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.12  E-value=4.6e-10  Score=79.45  Aligned_cols=103  Identities=25%  Similarity=0.406  Sum_probs=82.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|++|+++++ .+..+|..+..+++|+.|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++|+
T Consensus        31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~-~i~~~--~f~~l~~L~  105 (193)
T 2wfh_A           31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLR-CIPPR--TFDGLKSLR  105 (193)
T ss_dssp             TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-BCCTT--TTTTCTTCC
T ss_pred             CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccC-EeCHH--HhCCCCCCC
Confidence            58999999985 7888998889999999999999 8888887644  379999999885 676 66654  688899999


Q ss_pred             EEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713           81 HLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +|++++  +.+..+|.. +..+      ++|+.|++.+++
T Consensus       106 ~L~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~  137 (193)
T 2wfh_A          106 LLSLHG--NDISVVPEGAFNDL------SALSHLAIGANP  137 (193)
T ss_dssp             EEECCS--SCCCBCCTTTTTTC------TTCCEEECCSSC
T ss_pred             EEECCC--CCCCeeChhhhhcC------ccccEEEeCCCC
Confidence            999998  556555542 3333      789999998754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.11  E-value=9.1e-10  Score=80.59  Aligned_cols=78  Identities=24%  Similarity=0.332  Sum_probs=37.4

Q ss_pred             CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++++.|+++++ .+..++ ..+.++++|++|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++|
T Consensus        35 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L  109 (251)
T 3m19_A           35 ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN-QLA-SLPLG--VFDHLTQL  109 (251)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC-ccc-ccChh--HhcccCCC
Confidence            35666666654 333333 2345556666666665 5555444322  245555555543 333 33322  34444555


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       110 ~~L~L~~  116 (251)
T 3m19_A          110 DKLYLGG  116 (251)
T ss_dssp             CEEECCS
T ss_pred             CEEEcCC
Confidence            5555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.10  E-value=5.2e-10  Score=79.08  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCC--CCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSL--EEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~l--p~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      +|++|++++| .+..++ .+..+++|++|++++ .+...  ..-+..++|+.|++++| .+....+.   .+..+++|++
T Consensus        67 ~L~~L~l~~n-~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~---~l~~l~~L~~  140 (197)
T 4ezg_A           67 NIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILT---KINTLPKVNS  140 (197)
T ss_dssp             TCSEEEEESC-CCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHH---HHTTCSSCCE
T ss_pred             CCCEEEccCC-CCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHH---HHhhCCCCCE
Confidence            4455555544 333222 344455555555555 33321  11112245555555553 22212233   2455555666


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI  147 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~  147 (157)
                      |++++ |..+..+| .+..+      ++|+.|++++|. +.      ....+..+.+++.+.+.+.
T Consensus       141 L~L~~-n~~i~~~~-~l~~l------~~L~~L~l~~n~-i~------~~~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          141 IDLSY-NGAITDIM-PLKTL------PELKSLNIQFDG-VH------DYRGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECCS-CTBCCCCG-GGGGC------SSCCEEECTTBC-CC------CCTTGGGCSSCCEEEECBC
T ss_pred             EEccC-CCCccccH-hhcCC------CCCCEEECCCCC-Cc------ChHHhccCCCCCEEEeeCc
Confidence            66655 44344443 23333      466666666553 11      1113444556666666653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.08  E-value=3.5e-10  Score=77.84  Aligned_cols=103  Identities=20%  Similarity=0.307  Sum_probs=79.7

Q ss_pred             CCcceEeeecCcCCc--ccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLE--ALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|++|++++| .+.  .+|..+..+++|+.|++++ .+..+..-...++|+.|++++| .+...+|.   .+..+++|+
T Consensus        24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~~~~l~~L~   98 (168)
T 2ell_A           24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN-RIFGGLDM---LAEKLPNLT   98 (168)
T ss_dssp             TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESC-CCCSCCCH---HHHHCTTCC
T ss_pred             ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCC-cCchHHHH---HHhhCCCCC
Confidence            68999999997 466  7888889999999999999 7777743344579999999986 45423555   355689999


Q ss_pred             EEEEecCCCCCcccC--cccccCCCCCCCCCccEEeeeCCh
Q 040713           81 HLTISGCDDDMVSFP--PELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp--~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +|++++  +.+..+|  ..+..+      ++|+.|++++|+
T Consensus        99 ~L~Ls~--N~l~~~~~~~~l~~l------~~L~~L~l~~N~  131 (168)
T 2ell_A           99 HLNLSG--NKLKDISTLEPLKKL------ECLKSLDLFNCE  131 (168)
T ss_dssp             EEECBS--SSCCSSGGGGGGSSC------SCCCEEECCSSG
T ss_pred             EEeccC--CccCcchhHHHHhcC------CCCCEEEeeCCc
Confidence            999998  4566655  344444      789999999986

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.08  E-value=5.5e-10  Score=90.65  Aligned_cols=103  Identities=21%  Similarity=0.297  Sum_probs=78.9

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +++++|++++ +.++.+|+ .+.++++|++|++++ .+..++++.+  .++|++|+++++ .++ .+|..  .+.++++|
T Consensus        52 ~~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~-~l~~~--~f~~L~~L  126 (635)
T 4g8a_A           52 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ-SLALG--AFSGLSSL  126 (635)
T ss_dssp             TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC-EECGG--GGTTCTTC
T ss_pred             cCCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCC-CCCHH--HhcCCCCC
Confidence            5899999998 47888875 678999999999999 8988887654  379999999886 576 77764  57889999


Q ss_pred             CEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++  +.+..+|. .+..+      ++|++|+++++.
T Consensus       127 ~~L~Ls~--N~l~~l~~~~~~~L------~~L~~L~Ls~N~  159 (635)
T 4g8a_A          127 QKLVAVE--TNLASLENFPIGHL------KTLKELNVAHNL  159 (635)
T ss_dssp             CEEECTT--SCCCCSTTCCCTTC------TTCCEEECCSSC
T ss_pred             CEEECCC--CcCCCCChhhhhcC------cccCeeccccCc
Confidence            9999998  44555543 13333      577777777653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.07  E-value=4.2e-10  Score=81.69  Aligned_cols=102  Identities=18%  Similarity=0.253  Sum_probs=74.8

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-c-ccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-E-LPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~-l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      ++|++|+++++ .++.+|. .+..+++|++|++++ . +..++...+  .++|+.|++++|+.++ .++..  .+.++++
T Consensus        31 ~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~--~f~~l~~  106 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPD--ALKELPL  106 (239)
T ss_dssp             TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTT--SEECCTT
T ss_pred             CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHH--HhCCCCC
Confidence            48999999985 6777776 677899999999998 5 888887543  3689999998867787 67654  5778899


Q ss_pred             cCEEEEecCCCCCcccCcccccCCCCCCCCCcc---EEeeeCC
Q 040713           79 LRHLTISGCDDDMVSFPPELKYFPEKGLPSSLL---QLWIWGC  118 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~---~L~i~~c  118 (157)
                      |++|++++  +.++.+|. +..+      ++|+   .|+++++
T Consensus       107 L~~L~l~~--n~l~~lp~-~~~l------~~L~~L~~L~l~~N  140 (239)
T 2xwt_C          107 LKFLGIFN--TGLKMFPD-LTKV------YSTDIFFILEITDN  140 (239)
T ss_dssp             CCEEEEEE--ECCCSCCC-CTTC------CBCCSEEEEEEESC
T ss_pred             CCEEeCCC--CCCccccc-cccc------cccccccEEECCCC
Confidence            99999988  44555663 3322      3444   6666665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.07  E-value=2.4e-09  Score=76.07  Aligned_cols=125  Identities=26%  Similarity=0.423  Sum_probs=80.9

Q ss_pred             CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..++.. +..+++|++|++++ .+..++...+  .++|++|+++++ .+. .++..  .+..+++|
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~~--~~~~l~~L  102 (208)
T 2o6s_A           28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN-QLQ-SLPNG--VFDKLTQL  102 (208)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC-cCC-ccCHh--HhcCccCC
Confidence            47889999885 56666654 57889999999998 8888876543  368999999875 565 56553  46778889


Q ss_pred             CEEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECc
Q 040713           80 RHLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIAN  146 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~  146 (157)
                      ++|++++  +.+..+|.. +..+      ++|+.|+++++. +.    ......+..+.++..+.+.+
T Consensus       103 ~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~-l~----~~~~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A          103 KELALNT--NQLQSLPDGVFDKL------TQLKDLRLYQNQ-LK----SVPDGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             CEEECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC-CS----CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCC--CcCcccCHhHhccC------CcCCEEECCCCc-cc----eeCHHHhccCCCccEEEecC
Confidence            9998887  445544432 2222      577777776653 11    11112234455555555554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.06  E-value=2.4e-09  Score=75.60  Aligned_cols=125  Identities=18%  Similarity=0.179  Sum_probs=91.6

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|+++++ .+..+| ++..+++|++|++++ .+..++.-...++|++|++++| .+....+.   .+..+++|++|
T Consensus        44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~---~l~~l~~L~~L  117 (197)
T 4ezg_A           44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIP---NLSGLTSLTLL  117 (197)
T ss_dssp             HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-TCBGGGSC---CCTTCTTCCEE
T ss_pred             CCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECC-ccCcccCh---hhcCCCCCCEE
Confidence            47999999995 677888 788999999999999 7776665445579999999986 55423455   58889999999


Q ss_pred             EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713           83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI  147 (157)
Q Consensus        83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~  147 (157)
                      ++++ |.-....|..+..+      ++|++|++++|..+...      ..+..+.++..+.+.+.
T Consensus       118 ~Ls~-n~i~~~~~~~l~~l------~~L~~L~L~~n~~i~~~------~~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          118 DISH-SAHDDSILTKINTL------PKVNSIDLSYNGAITDI------MPLKTLPELKSLNIQFD  169 (197)
T ss_dssp             ECCS-SBCBGGGHHHHTTC------SSCCEEECCSCTBCCCC------GGGGGCSSCCEEECTTB
T ss_pred             EecC-CccCcHhHHHHhhC------CCCCEEEccCCCCcccc------HhhcCCCCCCEEECCCC
Confidence            9998 44332344445555      79999999998744321      23455667777777664

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.06  E-value=2.7e-09  Score=78.85  Aligned_cols=54  Identities=30%  Similarity=0.559  Sum_probs=28.6

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecC
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDG   58 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~   58 (157)
                      +++++|+++++ .+..++. .+..+++|++|++++ .+..++...+  .++|++|++++
T Consensus        37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            35666666664 3444443 455566666666665 5555554322  24555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.06  E-value=6.4e-10  Score=80.72  Aligned_cols=106  Identities=18%  Similarity=0.142  Sum_probs=45.9

Q ss_pred             CcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCCCCcc---EEEecCCCCchhhhhhccccCCCCCcc
Q 040713            5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLPTNLH---SLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~---~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +|++|++++|+.++.++. .+..+++|++|++++ .+..+|.-+..++|+   .|+++++..++ .++..  .+..+++|
T Consensus        81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~-~i~~~--~~~~l~~L  157 (239)
T 2xwt_C           81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT-SIPVN--AFQGLCNE  157 (239)
T ss_dssp             TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCC-EECTT--TTTTTBSS
T ss_pred             CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchh-hcCcc--cccchhcc
Confidence            444444444333444332 233444444444444 444444322223343   55555443444 44432  34455555


Q ss_pred             C-EEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhH
Q 040713           80 R-HLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLI  121 (157)
Q Consensus        80 ~-~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l  121 (157)
                      + +|++++  +.++.+|...-      -.++|+.|++.+++.+
T Consensus       158 ~~~L~l~~--n~l~~i~~~~~------~~~~L~~L~L~~n~~l  192 (239)
T 2xwt_C          158 TLTLKLYN--NGFTSVQGYAF------NGTKLDAVYLNKNKYL  192 (239)
T ss_dssp             EEEEECCS--CCCCEECTTTT------TTCEEEEEECTTCTTC
T ss_pred             eeEEEcCC--CCCcccCHhhc------CCCCCCEEEcCCCCCc
Confidence            5 555555  22333332110      1146677777666433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.05  E-value=1.5e-09  Score=78.15  Aligned_cols=77  Identities=21%  Similarity=0.385  Sum_probs=37.9

Q ss_pred             CcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      +|+.|+++++ .++.++. .+..+++|+.|++++ .+..+.+..+  .++|++|+++++ .++ .+|..  .+..+++|+
T Consensus        33 ~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~--~f~~l~~L~  107 (220)
T 2v9t_B           33 TITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KIT-ELPKS--LFEGLFSLQ  107 (220)
T ss_dssp             TCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCC-CCCTT--TTTTCTTCC
T ss_pred             CCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCC-ccCHh--HccCCCCCC
Confidence            5566666553 4444443 445555555665555 5544433322  245555555542 343 44432  344455555


Q ss_pred             EEEEec
Q 040713           81 HLTISG   86 (157)
Q Consensus        81 ~L~i~~   86 (157)
                      +|++++
T Consensus       108 ~L~L~~  113 (220)
T 2v9t_B          108 LLLLNA  113 (220)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            555554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.05  E-value=2.1e-09  Score=80.57  Aligned_cols=85  Identities=22%  Similarity=0.363  Sum_probs=49.4

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|++|+++++ .+..+|..+..+++|++|++++ .+..++...+  .++|+.|+++++ .+. .+|..  .+..+++|+
T Consensus        77 ~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~L~  151 (290)
T 1p9a_G           77 PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELK-TLPPG--LLTPTPKLE  151 (290)
T ss_dssp             TTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCC-CCCTT--TTTTCTTCC
T ss_pred             CcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCC-ccChh--hcccccCCC
Confidence            45666666663 5556666666666777777766 6666665432  246666666653 444 44443  345566666


Q ss_pred             EEEEecCCCCCcccC
Q 040713           81 HLTISGCDDDMVSFP   95 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp   95 (157)
                      .|++++  +.++.+|
T Consensus       152 ~L~L~~--N~l~~l~  164 (290)
T 1p9a_G          152 KLSLAN--NNLTELP  164 (290)
T ss_dssp             EEECTT--SCCSCCC
T ss_pred             EEECCC--CcCCccC
Confidence            666665  3344444

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.04  E-value=2.3e-09  Score=77.23  Aligned_cols=104  Identities=19%  Similarity=0.362  Sum_probs=76.1

Q ss_pred             CCCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|+.|+++++ .+..+ |..+..+++|++|++++ .+..+|...+  .++|+.|+++++ .+. .++..  .+..+++
T Consensus        55 l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~  129 (220)
T 2v9t_B           55 YKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNAN-KIN-CLRVD--AFQDLHN  129 (220)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTT
T ss_pred             CCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCC-CCC-EeCHH--HcCCCCC
Confidence            358899999885 55555 67788899999999998 8888887643  368999999875 565 55443  5788899


Q ss_pred             cCEEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713           79 LRHLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++|++++  +.+..++.. +..+      ++|+.|++.+++
T Consensus       130 L~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~  163 (220)
T 2v9t_B          130 LNLLSLYD--NKLQTIAKGTFSPL------RAIQTMHLAQNP  163 (220)
T ss_dssp             CCEEECCS--SCCSCCCTTTTTTC------TTCCEEECCSSC
T ss_pred             CCEEECCC--CcCCEECHHHHhCC------CCCCEEEeCCCC
Confidence            99999988  545554431 2333      688899988765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.02  E-value=2.5e-09  Score=79.42  Aligned_cols=78  Identities=21%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-c-ccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-E-LPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~-l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      ++|++|+++++ .+..+ |..+..+++|++|++++ . +..++...+  .++|+.|+++++ .+. .++..  .+..+++
T Consensus        56 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~--~~~~l~~  130 (285)
T 1ozn_A           56 RNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQ-ELGPG--LFRGLAA  130 (285)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS-CCC-CCCTT--TTTTCTT
T ss_pred             CCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC-cCC-EECHh--HhhCCcC
Confidence            45666666554 33333 44455555566666655 3 554433322  245555555543 222 22211  2444445


Q ss_pred             cCEEEEec
Q 040713           79 LRHLTISG   86 (157)
Q Consensus        79 L~~L~i~~   86 (157)
                      |++|++++
T Consensus       131 L~~L~l~~  138 (285)
T 1ozn_A          131 LQYLYLQD  138 (285)
T ss_dssp             CCEEECCS
T ss_pred             CCEEECCC
Confidence            55555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.01  E-value=4.7e-09  Score=76.75  Aligned_cols=127  Identities=23%  Similarity=0.341  Sum_probs=92.6

Q ss_pred             CCCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|++|+++++ .+..++. .+..+++|++|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++
T Consensus        58 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~  132 (251)
T 3m19_A           58 LTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN-QLK-SLPSG--VFDRLTK  132 (251)
T ss_dssp             CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTT
T ss_pred             cccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCC-cCC-CcChh--HhccCCc
Confidence            368999999996 5666554 568999999999999 8888886643  479999999885 676 67654  4678999


Q ss_pred             cCEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713           79 LRHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI  147 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~  147 (157)
                      |++|++++  +.+..+|. .+..+      ++|+.|+++++. +.    ......+..+.++..+.+.+.
T Consensus       133 L~~L~Ls~--N~l~~~~~~~~~~l------~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          133 LKELRLNT--NQLQSIPAGAFDKL------TNLQTLSLSTNQ-LQ----SVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CCEEECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC-CS----CCCTTTTTTCTTCCEEECCSC
T ss_pred             ccEEECcC--CcCCccCHHHcCcC------cCCCEEECCCCc-CC----ccCHHHHhCCCCCCEEEeeCC
Confidence            99999998  45655554 23333      789999998874 21    112234566777888887764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.00  E-value=3.1e-09  Score=83.66  Aligned_cols=77  Identities=23%  Similarity=0.447  Sum_probs=33.3

Q ss_pred             CcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            5 KLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      +|++|+++++ .+..++ ..+.++++|++|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++|+
T Consensus        89 ~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~-~~~~~--~~~~l~~L~  163 (440)
T 3zyj_A           89 HLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNN-PIE-SIPSY--AFNRIPSLR  163 (440)
T ss_dssp             SCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSC-CCC-EECTT--TTTTCTTCC
T ss_pred             CCCEEECCCC-cCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCC-ccc-ccCHH--HhhhCcccC
Confidence            4444555443 233332 3344455555555555 4444444321  234555555443 233 33322  334444444


Q ss_pred             EEEEec
Q 040713           81 HLTISG   86 (157)
Q Consensus        81 ~L~i~~   86 (157)
                      +|++++
T Consensus       164 ~L~l~~  169 (440)
T 3zyj_A          164 RLDLGE  169 (440)
T ss_dssp             EEECCC
T ss_pred             EeCCCC
Confidence            444444

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.00  E-value=2.5e-09  Score=84.47  Aligned_cols=66  Identities=24%  Similarity=0.373  Sum_probs=27.3

Q ss_pred             cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCccc
Q 040713           24 LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSF   94 (157)
Q Consensus        24 ~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~l   94 (157)
                      +.++++|++|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++|++|++++ |+.++.+
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~L~~L~l~~-~~~l~~i  187 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN-PIE-SIPSY--AFNRVPSLMRLDLGE-LKKLEYI  187 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC-CCC-EECTT--TTTTCTTCCEEECCC-CTTCCEE
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC-Ccc-eeCHh--HHhcCCcccEEeCCC-CCCcccc
Confidence            33444444444444 4444443321  234445554443 233 33332  334444444444444 4443333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.99  E-value=2.5e-09  Score=76.98  Aligned_cols=77  Identities=14%  Similarity=0.354  Sum_probs=34.9

Q ss_pred             CcceEeeecCcCCcccCc--ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            5 KLTRLEIYDCKRLEALPK--GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      .+++|+++++ .+..++.  .+..+++|+.|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++|
T Consensus        33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L  107 (220)
T 2v70_A           33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN-RLE-NVQHK--MFKGLESL  107 (220)
T ss_dssp             TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC-CCCGG--GGTTCSSC
T ss_pred             CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC-ccC-ccCHh--HhcCCcCC
Confidence            4555555553 3444421  234555555555555 4444443221  235555555443 333 33322  34445555


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       108 ~~L~Ls~  114 (220)
T 2v70_A          108 KTLMLRS  114 (220)
T ss_dssp             CEEECTT
T ss_pred             CEEECCC
Confidence            5555554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.99  E-value=4.2e-09  Score=73.01  Aligned_cols=103  Identities=28%  Similarity=0.549  Sum_probs=78.2

Q ss_pred             CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..+|.. +..+++|++|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++|
T Consensus        28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~-~~~~~--~~~~l~~L  102 (177)
T 2o6r_A           28 SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQ-SLPNG--VFDKLTQL  102 (177)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-Ccc-ccCHH--HhhCCccc
Confidence            58999999985 56677654 57899999999999 8888887543  479999999885 666 66653  46788999


Q ss_pred             CEEEEecCCCCCcccCccc-ccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSFPPEL-KYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~l-~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++  +.+..+|... ..+      ++|+.|++.+++
T Consensus       103 ~~L~l~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~  135 (177)
T 2o6r_A          103 KELALDT--NQLKSVPDGIFDRL------TSLQKIWLHTNP  135 (177)
T ss_dssp             CEEECCS--SCCSCCCTTTTTTC------TTCCEEECCSSC
T ss_pred             CEEECcC--CcceEeCHHHhcCC------cccCEEEecCCC
Confidence            9999998  4565555432 333      689999998865

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.99  E-value=5.4e-09  Score=77.36  Aligned_cols=77  Identities=26%  Similarity=0.375  Sum_probs=35.4

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|++|+++++ .+..++ .+..+++|++|++++ .+..++...+  .++|+.|++++| .+. .++..  .+..+++|+
T Consensus        63 ~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L~  136 (272)
T 3rfs_A           63 PNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN-QLQ-SLPDG--VFDKLTNLT  136 (272)
T ss_dssp             TTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCC-CCCTT--TTTTCTTCC
T ss_pred             CCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC-cCC-ccCHH--HhccCCCCC
Confidence            45555555553 333332 344555555555555 4444444321  245555555443 233 23321  234445555


Q ss_pred             EEEEec
Q 040713           81 HLTISG   86 (157)
Q Consensus        81 ~L~i~~   86 (157)
                      +|++++
T Consensus       137 ~L~L~~  142 (272)
T 3rfs_A          137 YLNLAH  142 (272)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.98  E-value=6.5e-09  Score=76.80  Aligned_cols=78  Identities=29%  Similarity=0.428  Sum_probs=50.0

Q ss_pred             CCcceEeeecCcCCcccCccc-CCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKGL-HNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..+|... ..+++|++|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++|
T Consensus        61 ~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~--~~~~l~~L  135 (270)
T 2o6q_A           61 TKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN-QLK-SLPPR--VFDSLTKL  135 (270)
T ss_dssp             TTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCCCEEECCCC-ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC-ccC-eeCHH--HhCcCcCC
Confidence            57788888774 566666544 5677888888877 7776665432  356777777664 444 44433  35566667


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       136 ~~L~Ls~  142 (270)
T 2o6q_A          136 TYLSLGY  142 (270)
T ss_dssp             CEEECCS
T ss_pred             CEEECCC
Confidence            7776666

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.97  E-value=4.4e-09  Score=75.70  Aligned_cols=103  Identities=17%  Similarity=0.345  Sum_probs=75.1

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .++.++. .+..+++|++|++++ .+..++...+  .++|++|+++++ .+. .++..  .+..+++|
T Consensus        57 ~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L  131 (220)
T 2v70_A           57 PQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-RIT-CVGND--SFIGLSSV  131 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTS-CCC-CBCTT--SSTTCTTC
T ss_pred             CCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCC-cCC-eECHh--HcCCCccC
Confidence            57889999885 5666655 678899999999998 8888776533  368999999875 565 45333  57888999


Q ss_pred             CEEEEecCCCCCccc-CcccccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSF-PPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~l-p~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++  +.+..+ |..+..+      ++|+.|++.+++
T Consensus       132 ~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~  164 (220)
T 2v70_A          132 RLLSLYD--NQITTVAPGAFDTL------HSLSTLNLLANP  164 (220)
T ss_dssp             SEEECTT--SCCCCBCTTTTTTC------TTCCEEECCSCC
T ss_pred             CEEECCC--CcCCEECHHHhcCC------CCCCEEEecCcC
Confidence            9999988  445554 3344444      688899988765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.97  E-value=6.6e-09  Score=76.79  Aligned_cols=98  Identities=24%  Similarity=0.357  Sum_probs=58.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|+++++ .+..++. +..+++|+.|++++ .+..++.... ++|+.|++++| .+. .++    .+..+++|++|
T Consensus        63 ~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N-~l~-~~~----~l~~l~~L~~L  133 (263)
T 1xeu_A           63 TNLKELHLSHN-QISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNN-ELR-DTD----SLIHLKNLEIL  133 (263)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSS-CCS-BSG----GGTTCTTCCEE
T ss_pred             CCCCEEECCCC-ccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCC-ccC-CCh----hhcCcccccEE
Confidence            45666666654 4555554 55666666666666 5555554433 56777777664 454 443    35667777777


Q ss_pred             EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++++  +.++.+| .+..+      ++|+.|++++|.
T Consensus       134 ~Ls~--N~i~~~~-~l~~l------~~L~~L~L~~N~  161 (263)
T 1xeu_A          134 SIRN--NKLKSIV-MLGFL------SKLEVLDLHGNE  161 (263)
T ss_dssp             ECTT--SCCCBCG-GGGGC------TTCCEEECTTSC
T ss_pred             ECCC--CcCCCCh-HHccC------CCCCEEECCCCc
Confidence            7776  4455443 33333      577777777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.96  E-value=6.3e-09  Score=73.88  Aligned_cols=104  Identities=28%  Similarity=0.486  Sum_probs=80.3

Q ss_pred             CCCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|++|+++++ .++.+|.. +..+++|++|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++
T Consensus        51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~  125 (208)
T 2o6s_A           51 LTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN-QLQ-SLPDG--VFDKLTQ  125 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTT
T ss_pred             cccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCC-cCc-ccCHh--HhccCCc
Confidence            368999999995 67777764 57899999999999 8888887543  479999999885 666 66654  5788999


Q ss_pred             cCEEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713           79 LRHLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++|++++  +.+..+|.. +..+      ++|+.|++.+++
T Consensus       126 L~~L~l~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~  159 (208)
T 2o6s_A          126 LKDLRLYQ--NQLKSVPDGVFDRL------TSLQYIWLHDNP  159 (208)
T ss_dssp             CCEEECCS--SCCSCCCTTTTTTC------TTCCEEECCSCC
T ss_pred             CCEEECCC--CccceeCHHHhccC------CCccEEEecCCC
Confidence            99999998  445555432 2333      789999998853

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.96  E-value=5.1e-09  Score=78.45  Aligned_cols=104  Identities=26%  Similarity=0.339  Sum_probs=83.4

Q ss_pred             CCCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|++|+++++ .++.+| ..+..+++|++|++++ .+..+|.+.+  .++|+.|+++++ .++ .+|..  .+..+++
T Consensus        99 l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~l~~~--~~~~l~~  173 (290)
T 1p9a_G           99 LPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLT-ELPAG--LLNGLEN  173 (290)
T ss_dssp             CTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCS-CCCTT--TTTTCTT
T ss_pred             CCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCC-ccCHH--HhcCcCC
Confidence            368999999995 677776 4578999999999999 9999988654  379999999885 676 78765  5678999


Q ss_pred             cCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           79 LRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++|++++  +.+..+|..+...      .+|+.+++.+++
T Consensus       174 L~~L~L~~--N~l~~ip~~~~~~------~~L~~l~L~~Np  206 (290)
T 1p9a_G          174 LDTLLLQE--NSLYTIPKGFFGS------HLLPFAFLHGNP  206 (290)
T ss_dssp             CCEEECCS--SCCCCCCTTTTTT------CCCSEEECCSCC
T ss_pred             CCEEECCC--CcCCccChhhccc------ccCCeEEeCCCC
Confidence            99999998  5566666554443      589999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.95  E-value=7.8e-09  Score=76.75  Aligned_cols=85  Identities=18%  Similarity=0.255  Sum_probs=65.3

Q ss_pred             CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..++ ..+..+++|++|++++ .+..++...+  .++|+.|+++++..+. .++..  .+..+++|
T Consensus        32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~--~~~~l~~L  107 (285)
T 1ozn_A           32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPA--TFHGLGRL  107 (285)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTT--TTTTCTTC
T ss_pred             CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHH--HhcCCcCC
Confidence            58999999995 566666 4678999999999999 7877754433  3799999999876576 56433  58889999


Q ss_pred             CEEEEecCCCCCccc
Q 040713           80 RHLTISGCDDDMVSF   94 (157)
Q Consensus        80 ~~L~i~~~c~~l~~l   94 (157)
                      ++|++++ +. +..+
T Consensus       108 ~~L~l~~-n~-l~~~  120 (285)
T 1ozn_A          108 HTLHLDR-CG-LQEL  120 (285)
T ss_dssp             CEEECTT-SC-CCCC
T ss_pred             CEEECCC-Cc-CCEE
Confidence            9999998 43 4443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.94  E-value=4.9e-09  Score=75.86  Aligned_cols=103  Identities=29%  Similarity=0.493  Sum_probs=82.0

Q ss_pred             CCCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|++|+++++ .+..+|.. +..+++|+.|++++ .+..++...+  .++|+.|+++++ .+. .+|.   .+..+++
T Consensus        63 l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~-~lp~---~~~~l~~  136 (229)
T 3e6j_A           63 LINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN-KLT-ELPR---GIERLTH  136 (229)
T ss_dssp             CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-SCCT---TGGGCTT
T ss_pred             ccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC-ccc-ccCc---ccccCCC
Confidence            468999999995 67888754 57999999999999 9998887643  479999999874 677 7887   4788999


Q ss_pred             cCEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCCh
Q 040713           79 LRHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++|++++  +.+..+|. .+..+      ++|+.|++.+++
T Consensus       137 L~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~  170 (229)
T 3e6j_A          137 LTHLALDQ--NQLKSIPHGAFDRL------SSLTHAYLFGNP  170 (229)
T ss_dssp             CSEEECCS--SCCCCCCTTTTTTC------TTCCEEECTTSC
T ss_pred             CCEEECCC--CcCCccCHHHHhCC------CCCCEEEeeCCC
Confidence            99999998  55665553 23333      789999998865

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.94  E-value=1.8e-09  Score=72.77  Aligned_cols=103  Identities=19%  Similarity=0.260  Sum_probs=80.2

Q ss_pred             CCcceEeeecCcCCc--ccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLE--ALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|+.|++++| .+.  .+|..+..+++|+.|++++ .+..++.-+..++|+.|++++| .+...+|.   .+..+++|+
T Consensus        17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~---~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDN-RVSGGLEV---LAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSS-CCCSCTHH---HHHHCTTCC
T ss_pred             ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCC-cccchHHH---HhhhCCCCC
Confidence            58999999997 455  7888889999999999999 7777743344579999999986 55523665   356689999


Q ss_pred             EEEEecCCCCCcccC--cccccCCCCCCCCCccEEeeeCCh
Q 040713           81 HLTISGCDDDMVSFP--PELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp--~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +|++++  +.+..+|  ..+..+      ++|++|++++|+
T Consensus        92 ~L~ls~--N~i~~~~~~~~~~~l------~~L~~L~l~~N~  124 (149)
T 2je0_A           92 HLNLSG--NKIKDLSTIEPLKKL------ENLKSLDLFNCE  124 (149)
T ss_dssp             EEECTT--SCCCSHHHHGGGGGC------TTCCEEECTTCG
T ss_pred             EEECCC--CcCCChHHHHHHhhC------CCCCEEeCcCCc
Confidence            999998  4466554  445555      689999999985

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.94  E-value=5.7e-09  Score=73.55  Aligned_cols=103  Identities=20%  Similarity=0.348  Sum_probs=76.8

Q ss_pred             CCcceEeeecCcCCcccCcc--cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEALPKG--LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~--~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      ++|++|+++++ .+..++..  +..+++|++|++++ .+..+++..+  .++|+.|+++++ .++ .++..  .+.++++
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~  103 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIK-EISNK--MFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCC-EECSS--SSTTCTT
T ss_pred             CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCC-ccCHH--HhcCCCC
Confidence            38899999885 67777653  78899999999999 8888765443  368999999885 666 55543  5788999


Q ss_pred             cCEEEEecCCCCCccc-CcccccCCCCCCCCCccEEeeeCCh
Q 040713           79 LRHLTISGCDDDMVSF-PPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        79 L~~L~i~~~c~~l~~l-p~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++|++++  +.+..+ |..+..+      ++|+.|++++++
T Consensus       104 L~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~  137 (192)
T 1w8a_A          104 LKTLNLYD--NQISCVMPGSFEHL------NSLTSLNLASNP  137 (192)
T ss_dssp             CCEEECCS--SCCCEECTTSSTTC------TTCCEEECTTCC
T ss_pred             CCEEECCC--CcCCeeCHHHhhcC------CCCCEEEeCCCC
Confidence            99999998  445443 3344444      689999998864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.94  E-value=2.4e-09  Score=81.94  Aligned_cols=103  Identities=19%  Similarity=0.274  Sum_probs=66.4

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .++.++. .+.++++|++|++++ .+..++...+  .++|++|+++++ .++ .++..  .+.++++|
T Consensus        52 ~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~~--~~~~l~~L  126 (353)
T 2z80_A           52 EAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLS-NLSSS--WFKPLSSL  126 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCS-SCCHH--HHTTCTTC
T ss_pred             ccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCC-cCCHh--HhCCCccC
Confidence            47888888875 5666665 667888888888887 7776655433  357888888764 555 55542  36677788


Q ss_pred             CEEEEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++  +.++.+|.  .+..+      ++|++|++++|.
T Consensus       127 ~~L~L~~--n~l~~l~~~~~~~~l------~~L~~L~l~~n~  160 (353)
T 2z80_A          127 TFLNLLG--NPYKTLGETSLFSHL------TKLQILRVGNMD  160 (353)
T ss_dssp             SEEECTT--CCCSSSCSSCSCTTC------TTCCEEEEEESS
T ss_pred             CEEECCC--CCCcccCchhhhccC------CCCcEEECCCCc
Confidence            8888877  34444443  22222      566666666653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.93  E-value=9.8e-09  Score=80.82  Aligned_cols=79  Identities=22%  Similarity=0.323  Sum_probs=44.3

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      ++|++|++++|+.+..++. .+..+++|++|++++ .+..+|.....++|+.|+++++ .+. .++..  .+.++++|++
T Consensus       160 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~~  235 (440)
T 3zyj_A          160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGN-HLS-AIRPG--SFQGLMHLQK  235 (440)
T ss_dssp             TTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTS-CCC-EECTT--TTTTCTTCCE
T ss_pred             cccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCC-ccC-ccChh--hhccCccCCE
Confidence            3555555555545554443 345666666666666 6666654444456667776664 444 33222  4566666666


Q ss_pred             EEEec
Q 040713           82 LTISG   86 (157)
Q Consensus        82 L~i~~   86 (157)
                      |++++
T Consensus       236 L~L~~  240 (440)
T 3zyj_A          236 LWMIQ  240 (440)
T ss_dssp             EECTT
T ss_pred             EECCC
Confidence            66665

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.92  E-value=7.6e-09  Score=81.32  Aligned_cols=104  Identities=17%  Similarity=0.243  Sum_probs=68.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|++|+++++.-....|..+..+++|++|++++ .+..++...+  .++|+.|++++| .+. .++..  .+..+++|+
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~  350 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLG-SIDSR--MFENLDKLE  350 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-EECGG--GGTTCTTCC
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCC-ccC-CcChh--HhcCcccCC
Confidence            4788888888644444566778888888888888 7776655433  368888888875 454 44332  467788888


Q ss_pred             EEEEecCCCCCccc-CcccccCCCCCCCCCccEEeeeCCh
Q 040713           81 HLTISGCDDDMVSF-PPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        81 ~L~i~~~c~~l~~l-p~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +|++++ | .+..+ |..+..+      ++|++|+++++.
T Consensus       351 ~L~Ls~-N-~l~~~~~~~~~~l------~~L~~L~L~~N~  382 (455)
T 3v47_A          351 VLDLSY-N-HIRALGDQSFLGL------PNLKELALDTNQ  382 (455)
T ss_dssp             EEECCS-S-CCCEECTTTTTTC------TTCCEEECCSSC
T ss_pred             EEECCC-C-cccccChhhcccc------ccccEEECCCCc
Confidence            888887 4 34433 3333333      566677766643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.92  E-value=8.4e-09  Score=71.76  Aligned_cols=98  Identities=23%  Similarity=0.465  Sum_probs=74.6

Q ss_pred             ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      +.+++++ ..++.+|..+.  ++|+.|++++ .+..+++..+  .++|+.|+++++ .++ .+|..  .+..+++|++|+
T Consensus        15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~i~~~--~~~~l~~L~~L~   87 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLT-AIPTG--VFDKLTQLTQLD   87 (174)
T ss_dssp             SEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTCCEEE
T ss_pred             cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCC-ccChh--HhCCcchhhEEE
Confidence            5677777 46888888664  8899999999 8888876543  468999999885 776 77764  467899999999


Q ss_pred             EecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713           84 ISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        84 i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +++  +.+..+|.. +..+      ++|+.|++.+++
T Consensus        88 L~~--N~l~~l~~~~~~~l------~~L~~L~L~~N~  116 (174)
T 2r9u_A           88 LND--NHLKSIPRGAFDNL------KSLTHIYLYNNP  116 (174)
T ss_dssp             CCS--SCCCCCCTTTTTTC------TTCSEEECCSSC
T ss_pred             CCC--CccceeCHHHhccc------cCCCEEEeCCCC
Confidence            998  556666543 4444      789999998865

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.91  E-value=1.1e-08  Score=80.79  Aligned_cols=78  Identities=26%  Similarity=0.383  Sum_probs=40.6

Q ss_pred             CcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      +|++|++++|+.+..++. .+..+++|+.|++++ .+..+|.....++|+.|+++++ .+. .++..  .+.++++|++|
T Consensus       172 ~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~~L  247 (452)
T 3zyi_A          172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGN-HFP-EIRPG--SFHGLSSLKKL  247 (452)
T ss_dssp             TCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTS-CCS-EECGG--GGTTCTTCCEE
T ss_pred             cccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCC-cCc-ccCcc--cccCccCCCEE
Confidence            444455544444444443 244556666666665 5555554334456666666654 333 23222  35566666666


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++++
T Consensus       248 ~L~~  251 (452)
T 3zyi_A          248 WVMN  251 (452)
T ss_dssp             ECTT
T ss_pred             EeCC
Confidence            6665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.91  E-value=3.2e-09  Score=73.71  Aligned_cols=104  Identities=18%  Similarity=0.269  Sum_probs=72.3

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      +++|+.|++++| .+..+|......++|+.|++++ .+..++.-+..++|+.|+++++ .+. .+|..  .+..+++|++
T Consensus        18 ~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~~   92 (176)
T 1a9n_A           18 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RIC-RIGEG--LDQALPDLTE   92 (176)
T ss_dssp             TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCC-EECSC--HHHHCTTCCE
T ss_pred             cCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-ccc-ccCcc--hhhcCCCCCE
Confidence            468889999886 6667754333344899999998 7766643334468999999875 565 56642  2367888999


Q ss_pred             EEEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCCh
Q 040713           82 LTISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        82 L~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++++  +.+..+|.  .+..+      ++|+.|++++++
T Consensus        93 L~L~~--N~i~~~~~~~~l~~l------~~L~~L~l~~N~  124 (176)
T 1a9n_A           93 LILTN--NSLVELGDLDPLASL------KSLTYLCILRNP  124 (176)
T ss_dssp             EECCS--CCCCCGGGGGGGGGC------TTCCEEECCSSG
T ss_pred             EECCC--CcCCcchhhHhhhcC------CCCCEEEecCCC
Confidence            99987  45666664  34444      678888888876

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.90  E-value=1.1e-08  Score=75.70  Aligned_cols=79  Identities=32%  Similarity=0.429  Sum_probs=53.3

Q ss_pred             CCCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|++|++++| .+..++.. +..+++|++|++++ .+..++...+  .++|+.|++++| .+. .++..  .+..+++
T Consensus        84 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~  158 (272)
T 3rfs_A           84 LTNLTYLILTGN-QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQ-SLPKG--VFDKLTN  158 (272)
T ss_dssp             CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTT
T ss_pred             CCCCCEEECCCC-ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccC-ccCHH--HhccCcc
Confidence            357888888875 55555543 56788888888887 7777766432  357888888775 555 55543  3566777


Q ss_pred             cCEEEEec
Q 040713           79 LRHLTISG   86 (157)
Q Consensus        79 L~~L~i~~   86 (157)
                      |++|++++
T Consensus       159 L~~L~l~~  166 (272)
T 3rfs_A          159 LTELDLSY  166 (272)
T ss_dssp             CCEEECCS
T ss_pred             CCEEECCC
Confidence            77777777

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.90  E-value=1.1e-08  Score=77.25  Aligned_cols=75  Identities=24%  Similarity=0.335  Sum_probs=37.3

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|++++| .+..++. +..+++|++|++++ .+..++.-...++|+.|++++| .+. .++.    +..+++|++|
T Consensus        63 ~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~-~~~~----l~~l~~L~~L  134 (308)
T 1h6u_A           63 NNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST-QIT-DVTP----LAGLSNLQVL  134 (308)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS-CCC-CCGG----GTTCTTCCEE
T ss_pred             CCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCC-CCC-Cchh----hcCCCCCCEE
Confidence            35555555553 3444444 55555555555555 4444443233345555555553 333 3332    4455555555


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++++
T Consensus       135 ~l~~  138 (308)
T 1h6u_A          135 YLDL  138 (308)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            5555

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.88  E-value=1.3e-08  Score=70.43  Aligned_cols=99  Identities=24%  Similarity=0.424  Sum_probs=74.9

Q ss_pred             cceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      .+.+++++ +.++.+|..+  .++|+.|++++ .+..+++..+  .++|+.|+++++ .+. .+|..  .+..+++|++|
T Consensus        11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~~--~f~~l~~L~~L   83 (170)
T 3g39_A           11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLT-VLPAG--VFDKLTQLTQL   83 (170)
T ss_dssp             TTEEECTT-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTT--TTTTCTTCCEE
T ss_pred             CCEEEeCC-CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcC-ccChh--hccCCCCCCEE
Confidence            46788887 4788888766  48899999999 8888876543  368999999885 676 67764  56889999999


Q ss_pred             EEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713           83 TISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        83 ~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++++  +.+..+|.. +..+      ++|+.|++++++
T Consensus        84 ~L~~--N~l~~~~~~~~~~l------~~L~~L~L~~N~  113 (170)
T 3g39_A           84 SLND--NQLKSIPRGAFDNL------KSLTHIWLLNNP  113 (170)
T ss_dssp             ECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC
T ss_pred             ECCC--CccCEeCHHHhcCC------CCCCEEEeCCCC
Confidence            9998  556665542 3444      689999998764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.86  E-value=1.3e-08  Score=75.19  Aligned_cols=78  Identities=24%  Similarity=0.344  Sum_probs=42.3

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .++.++. .+.++++|++|++++ .+..++...+  .++|++|+++++ .+. .++..  .+..+++|
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQ-SLALG--AFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC-EECTT--TTTTCTTC
T ss_pred             CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccC-ccChh--hhcCCccc
Confidence            36777777764 4555543 556667777777766 5555554322  246666666554 333 23321  34445555


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       103 ~~L~l~~  109 (276)
T 2z62_A          103 QKLVAVE  109 (276)
T ss_dssp             CEEECTT
T ss_pred             cEEECCC
Confidence            5555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.86  E-value=2.1e-09  Score=90.08  Aligned_cols=103  Identities=17%  Similarity=0.217  Sum_probs=83.7

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      .++|+.|+++++ .+..+|..+..+++|++|+|++ .+..+|.. +..++|+.|+++++ .+. .+|.   .+..+++|+
T Consensus       223 l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~-~lp~---~~~~l~~L~  296 (727)
T 4b8c_D          223 DQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLT-SLPA---ELGSCFQLK  296 (727)
T ss_dssp             CCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCS-SCCS---SGGGGTTCS
T ss_pred             CCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCC-ccCh---hhcCCCCCC
Confidence            357899999986 5778888888999999999999 88888754 23469999999885 576 7887   588899999


Q ss_pred             EEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           81 HLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +|++++  +.+..+|..+..+      ++|+.|++++++
T Consensus       297 ~L~L~~--N~l~~lp~~~~~l------~~L~~L~L~~N~  327 (727)
T 4b8c_D          297 YFYFFD--NMVTTLPWEFGNL------CNLQFLGVEGNP  327 (727)
T ss_dssp             EEECCS--SCCCCCCSSTTSC------TTCCCEECTTSC
T ss_pred             EEECCC--CCCCccChhhhcC------CCccEEeCCCCc
Confidence            999998  4677777666665      799999998875

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.85  E-value=3.1e-08  Score=76.64  Aligned_cols=78  Identities=21%  Similarity=0.272  Sum_probs=41.0

Q ss_pred             CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..++ ..+..+++|++|++++ .+..+++..+  .++|+.|+++++ .++ .+|..  .+..+++|
T Consensus        69 ~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~--~~~~l~~L  143 (390)
T 3o6n_A           69 RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLS-SLPRG--IFHNTPKL  143 (390)
T ss_dssp             CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             ccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCC-ccC-cCCHH--HhcCCCCC
Confidence            35555666554 344433 2455566666666665 5555544322  245666666553 444 45442  24556666


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       144 ~~L~L~~  150 (390)
T 3o6n_A          144 TTLSMSN  150 (390)
T ss_dssp             CEEECCS
T ss_pred             cEEECCC
Confidence            6666665

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.85  E-value=6.5e-09  Score=79.03  Aligned_cols=75  Identities=23%  Similarity=0.336  Sum_probs=36.3

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|+.|+++++ .+..++. +..+++|++|++++ .+..++.-...++|+.|++++| .+. .++    .+..+++|++|
T Consensus       199 ~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~-~~~----~~~~l~~L~~L  270 (347)
T 4fmz_A          199 TSLHYFTAYVN-QITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QIS-DIN----AVKDLTKLKML  270 (347)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCC-CCG----GGTTCTTCCEE
T ss_pred             CccceeecccC-CCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccC-CCh----hHhcCCCcCEE
Confidence            35555555553 3333332 44555555555555 4544443223345555555553 333 332    24445555555


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++++
T Consensus       271 ~l~~  274 (347)
T 4fmz_A          271 NVGS  274 (347)
T ss_dssp             ECCS
T ss_pred             EccC
Confidence            5555

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.85  E-value=1.4e-08  Score=77.11  Aligned_cols=75  Identities=23%  Similarity=0.429  Sum_probs=44.2

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|++.++ .+..++ ++..+++|++|++++ .+..++.-...++|++|++++| .+. .++    .+..+++|++|
T Consensus        44 ~~L~~L~l~~~-~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~-~~~----~~~~l~~L~~L  115 (347)
T 4fmz_A           44 ESITKLVVAGE-KVASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KIT-DIS----ALQNLTNLREL  115 (347)
T ss_dssp             TTCSEEECCSS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCC-CCG----GGTTCTTCSEE
T ss_pred             ccccEEEEeCC-ccccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCC-ccc-Cch----HHcCCCcCCEE
Confidence            35667777664 455554 355667777777776 5655554333356677777664 444 443    25566666666


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++++
T Consensus       116 ~l~~  119 (347)
T 4fmz_A          116 YLNE  119 (347)
T ss_dssp             ECTT
T ss_pred             ECcC
Confidence            6665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.85  E-value=5.9e-09  Score=80.66  Aligned_cols=103  Identities=15%  Similarity=0.274  Sum_probs=77.6

Q ss_pred             CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++++.|++.++ .++.+|.. +..+++|++|++++ .+..++...+  .++|++|+++++ .+. .++..  .+..+++|
T Consensus        45 ~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L  119 (390)
T 3o6n_A           45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIR-YLPPH--VFQNVPLL  119 (390)
T ss_dssp             CCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCceEEEecCC-chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCC-cCCHH--HhcCCCCC
Confidence            68999999995 68888876 47899999999999 8888876533  479999999986 565 55543  57899999


Q ss_pred             CEEEEecCCCCCcccCccc-ccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSFPPEL-KYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~l-~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++  +.+..+|..+ ..+      ++|++|+++++.
T Consensus       120 ~~L~L~~--n~l~~l~~~~~~~l------~~L~~L~L~~n~  152 (390)
T 3o6n_A          120 TVLVLER--NDLSSLPRGIFHNT------PKLTTLSMSNNN  152 (390)
T ss_dssp             CEEECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC
T ss_pred             CEEECCC--CccCcCCHHHhcCC------CCCcEEECCCCc
Confidence            9999998  4565665432 333      577777776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.84  E-value=7.7e-09  Score=77.44  Aligned_cols=78  Identities=22%  Similarity=0.219  Sum_probs=43.2

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCC-C--CCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEE-D--GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~-~--~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..+|..+..+++|++|++++ .+..++. .  ...++|+.|++++|. +....+.   .+..+++|
T Consensus        78 ~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~---~~~~l~~L  152 (306)
T 2z66_A           78 TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG---IFNGLSSL  152 (306)
T ss_dssp             SCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTT---TTTTCTTC
T ss_pred             cccCEEECCCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchh---hcccCcCC
Confidence            45666666664 4555666666677777777776 5555543 1  122466666666542 3212222   34555666


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       153 ~~L~l~~  159 (306)
T 2z66_A          153 EVLKMAG  159 (306)
T ss_dssp             CEEECTT
T ss_pred             CEEECCC
Confidence            6666655

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.84  E-value=4.6e-09  Score=72.16  Aligned_cols=102  Identities=19%  Similarity=0.263  Sum_probs=77.6

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC-CCCCC-CCCCccEEEecCCCCchhhhhh-ccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS-LEEDG-LPTNLHSLWIDGNKKIWKSMIE-RGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~-lp~~~-~~~~L~~L~i~~c~~l~~~lp~-~~~~l~~l~~L   79 (157)
                      ++|++|++++| .+..+ ..+..+++|++|++++ .+.. +|... ..++|+.|++++| .++ .++. .  .+..+++|
T Consensus        49 ~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~~--~l~~l~~L  122 (168)
T 2ell_A           49 VNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLK-DISTLE--PLKKLECL  122 (168)
T ss_dssp             GGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSS-SCC-SSGGGG--GGSSCSCC
T ss_pred             CCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCC-ccC-cchhHH--HHhcCCCC
Confidence            58999999997 47777 7788999999999999 8777 44322 2469999999986 666 5542 2  57889999


Q ss_pred             CEEEEecCCCCCcccCc----ccccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSFPP----ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~----~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++  +.+..+|.    .+..+      ++|+.|++.+|.
T Consensus       123 ~~L~l~~--N~l~~~~~~~~~~~~~l------~~L~~L~l~~n~  158 (168)
T 2ell_A          123 KSLDLFN--CEVTNLNDYRESVFKLL------PQLTYLDGYDRE  158 (168)
T ss_dssp             CEEECCS--SGGGTSTTHHHHHHTTC------SSCCEETTEETT
T ss_pred             CEEEeeC--CcCcchHHHHHHHHHhC------ccCcEecCCCCC
Confidence            9999998  44555553    33444      689999998876

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.83  E-value=2e-08  Score=85.75  Aligned_cols=102  Identities=18%  Similarity=0.225  Sum_probs=71.0

Q ss_pred             CCcceEeeecCcCCcccCcccC-CCCcccEEEeeC-cccCCCCCCCC---------CCccEEEecCCCCchhhhhhcccc
Q 040713            4 AKLTRLEIYDCKRLEALPKGLH-NLTSLQELKIGG-ELPSLEEDGLP---------TNLHSLWIDGNKKIWKSMIERGRG   72 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~-~l~~L~~L~l~~-~l~~lp~~~~~---------~~L~~L~i~~c~~l~~~lp~~~~~   72 (157)
                      ++|+.|++++| .+..+|..+. .+++|+.|++++ .+..+|...+.         ++|+.|++++| .+. .+|..   
T Consensus       673 ~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~-~lp~~---  746 (876)
T 4ecn_A          673 INASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLT-SLSDD---  746 (876)
T ss_dssp             CCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCC-CCCGG---
T ss_pred             CCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCC-CCc-cchHH---
Confidence            46777777775 5566776554 778888888888 77777765432         17888888876 666 67763   


Q ss_pred             CC--CCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           73 FH--RFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        73 l~--~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +.  .+++|+.|++++  +.+..+|..+..+      ++|+.|++++++
T Consensus       747 l~~~~l~~L~~L~Ls~--N~L~~lp~~l~~L------~~L~~L~Ls~N~  787 (876)
T 4ecn_A          747 FRATTLPYLSNMDVSY--NCFSSFPTQPLNS------SQLKAFGIRHQR  787 (876)
T ss_dssp             GSTTTCTTCCEEECCS--SCCSSCCCGGGGC------TTCCEEECCCCB
T ss_pred             hhhccCCCcCEEEeCC--CCCCccchhhhcC------CCCCEEECCCCC
Confidence            54  788888888887  4455566555554      577777776644

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.83  E-value=9.5e-09  Score=78.57  Aligned_cols=78  Identities=21%  Similarity=0.261  Sum_probs=39.3

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCC--CCCCCccEEEecCCCCchhhhhh-ccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEED--GLPTNLHSLWIDGNKKIWKSMIE-RGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~--~~~~~L~~L~i~~c~~l~~~lp~-~~~~l~~l~~   78 (157)
                      ++|++|+++++ .+..+ |..+.++++|++|++++ .+..++..  +..++|++|+++++ .++ .+|. .  .+..+++
T Consensus        76 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~~--~~~~l~~  150 (353)
T 2z80_A           76 VNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN-PYK-TLGETS--LFSHLTK  150 (353)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTC-CCS-SSCSSC--SCTTCTT
T ss_pred             CCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCC-CCc-ccCchh--hhccCCC
Confidence            45666666664 34443 33455566666666665 55555442  12245555555543 333 3433 1  2444555


Q ss_pred             cCEEEEec
Q 040713           79 LRHLTISG   86 (157)
Q Consensus        79 L~~L~i~~   86 (157)
                      |++|++++
T Consensus       151 L~~L~l~~  158 (353)
T 2z80_A          151 LQILRVGN  158 (353)
T ss_dssp             CCEEEEEE
T ss_pred             CcEEECCC
Confidence            55555555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.82  E-value=2.7e-08  Score=73.45  Aligned_cols=104  Identities=17%  Similarity=0.293  Sum_probs=77.2

Q ss_pred             CCCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|++|++++| .+..++. .+..+++|++|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++
T Consensus        51 l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~--~~~~l~~  125 (276)
T 2z62_A           51 FPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLA-SLENF--PIGHLKT  125 (276)
T ss_dssp             CTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS-CCC-CSTTC--CCTTCTT
T ss_pred             ccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC-Ccc-ccCch--hcccCCC
Confidence            368999999986 5666654 678899999999998 7877775433  368999999875 554 55543  4778899


Q ss_pred             cCEEEEecCCCCCcc--cCcccccCCCCCCCCCccEEeeeCCh
Q 040713           79 LRHLTISGCDDDMVS--FPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        79 L~~L~i~~~c~~l~~--lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++|++++  +.+..  +|..+..+      ++|++|++++|.
T Consensus       126 L~~L~l~~--n~l~~~~l~~~~~~l------~~L~~L~Ls~N~  160 (276)
T 2z62_A          126 LKELNVAH--NLIQSFKLPEYFSNL------TNLEHLDLSSNK  160 (276)
T ss_dssp             CCEEECCS--SCCCCCCCCGGGGGC------TTCCEEECCSSC
T ss_pred             CCEEECcC--CccceecCchhhccC------CCCCEEECCCCC
Confidence            99999998  44544  45555555      789999998874

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.82  E-value=5.8e-09  Score=85.13  Aligned_cols=100  Identities=19%  Similarity=0.199  Sum_probs=82.7

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      .+|+.|+++++ .++.+|. ++.+++|+.|++++ .+..+|.. +..++|+.|+++++ .++ .+|    .++.+++|++
T Consensus       441 ~~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~-~lp----~l~~l~~L~~  512 (567)
T 1dce_A          441 ADVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALE-NVD----GVANLPRLQE  512 (567)
T ss_dssp             TTCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSS-CCC-CCG----GGTTCSSCCE
T ss_pred             cCceEEEecCC-CCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCC-CCC-CCc----ccCCCCCCcE
Confidence            47899999995 7888987 89999999999999 88888764 23479999999885 676 677    3889999999


Q ss_pred             EEEecCCCCCccc--CcccccCCCCCCCCCccEEeeeCCh
Q 040713           82 LTISGCDDDMVSF--PPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        82 L~i~~~c~~l~~l--p~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++++  +.+..+  |..+..+      ++|+.|++++++
T Consensus       513 L~Ls~--N~l~~~~~p~~l~~l------~~L~~L~L~~N~  544 (567)
T 1dce_A          513 LLLCN--NRLQQSAAIQPLVSC------PRLVLLNLQGNS  544 (567)
T ss_dssp             EECCS--SCCCSSSTTGGGGGC------TTCCEEECTTSG
T ss_pred             EECCC--CCCCCCCCcHHHhcC------CCCCEEEecCCc
Confidence            99998  556666  6666666      799999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.82  E-value=1.4e-08  Score=76.02  Aligned_cols=79  Identities=25%  Similarity=0.278  Sum_probs=44.0

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC--CCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS--LEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~--lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++..-...+..+..+++|++|++++ .+..  +|.. ...++|+.|++++| .+. .++..  .+..+++|
T Consensus       126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~~--~~~~l~~L  201 (306)
T 2z66_A          126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLE-QLSPT--AFNSLSSL  201 (306)
T ss_dssp             TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCC-EECTT--TTTTCTTC
T ss_pred             cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcC-CcCHH--HhcCCCCC
Confidence            5677777777533333444556677777777776 4443  3322 12356777777664 343 33221  35566666


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       202 ~~L~L~~  208 (306)
T 2z66_A          202 QVLNMSH  208 (306)
T ss_dssp             CEEECTT
T ss_pred             CEEECCC
Confidence            6666666

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.82  E-value=1.9e-08  Score=77.39  Aligned_cols=77  Identities=21%  Similarity=0.248  Sum_probs=35.1

Q ss_pred             CcceEeeecCcCCcccCcc-cC-CCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            5 KLTRLEIYDCKRLEALPKG-LH-NLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~-~~-~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +++.|+++++ .+..++.. +. .+++|+.|++++ .+..++...+  .++|+.|+++++ .++ .++..  .+..+++|
T Consensus        40 ~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L  114 (361)
T 2xot_A           40 YTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN-HLH-TLDEF--LFSDLQAL  114 (361)
T ss_dssp             TCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC-EECTT--TTTTCTTC
T ss_pred             CCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC-cCC-cCCHH--HhCCCcCC
Confidence            4555555553 44444332 22 455555555555 5544443322  235555555442 333 33332  34444445


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       115 ~~L~L~~  121 (361)
T 2xot_A          115 EVLLLYN  121 (361)
T ss_dssp             CEEECCS
T ss_pred             CEEECCC
Confidence            5555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.82  E-value=2.1e-08  Score=75.12  Aligned_cols=75  Identities=23%  Similarity=0.273  Sum_probs=34.9

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|++++| .+..++. +..+++|+.|++++ .+..++.-...++|+.|++++| .+. .++    .+..+++|++|
T Consensus        68 ~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n-~i~-~~~----~l~~l~~L~~L  139 (291)
T 1h6t_A           68 PNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN-GIS-DIN----GLVHLPQLESL  139 (291)
T ss_dssp             TTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS-CCC-CCG----GGGGCTTCCEE
T ss_pred             CCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC-cCC-CCh----hhcCCCCCCEE
Confidence            34555555553 3444443 44555555555555 4444443233345555555543 333 232    23444555555


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++++
T Consensus       140 ~l~~  143 (291)
T 1h6t_A          140 YLGN  143 (291)
T ss_dssp             ECCS
T ss_pred             EccC
Confidence            5554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.82  E-value=2.1e-08  Score=75.07  Aligned_cols=99  Identities=20%  Similarity=0.329  Sum_probs=67.5

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      .++|++|+++++ .++.++. +..+++|++|++++ .+..++.-...++|+.|++++| .+. .++    .+..+++|++
T Consensus        89 l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n-~l~-~~~----~l~~l~~L~~  160 (291)
T 1h6t_A           89 LKNLGWLFLDEN-KVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KIT-DIT----VLSRLTKLDT  160 (291)
T ss_dssp             CTTCCEEECCSS-CCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSS-CCC-CCG----GGGGCTTCSE
T ss_pred             CCCCCEEECCCC-cCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCC-cCC-cch----hhccCCCCCE
Confidence            367888999885 5666654 77888889998888 7777654444568888888775 454 443    3667788888


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      |++++ | .+..++. +..+      ++|+.|++++|
T Consensus       161 L~L~~-N-~l~~~~~-l~~l------~~L~~L~L~~N  188 (291)
T 1h6t_A          161 LSLED-N-QISDIVP-LAGL------TKLQNLYLSKN  188 (291)
T ss_dssp             EECCS-S-CCCCCGG-GTTC------TTCCEEECCSS
T ss_pred             EEccC-C-ccccchh-hcCC------CccCEEECCCC
Confidence            88887 3 4554442 3333      56777777665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.82  E-value=5.9e-09  Score=78.80  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=37.7

Q ss_pred             CCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCC
Q 040713           27 LTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKG  105 (157)
Q Consensus        27 l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~  105 (157)
                      +++|++|++++ .+..++.....++|+.|++++| .+. .+|.   .+..+++|++|++++  +.+..+|..+..+    
T Consensus       168 l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-~l~-~l~~---~~~~l~~L~~L~L~~--N~l~~l~~~~~~l----  236 (317)
T 3o53_A          168 SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-KLA-FMGP---EFQSAAGVTWISLRN--NKLVLIEKALRFS----  236 (317)
T ss_dssp             TTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-CCC-EECG---GGGGGTTCSEEECTT--SCCCEECTTCCCC----
T ss_pred             cCcCCEEECCCCcCcccccccccccCCEEECCCC-cCC-cchh---hhcccCcccEEECcC--CcccchhhHhhcC----
Confidence            44444444444 4444433333445555555443 333 3433   244455555555555  2344444333332    


Q ss_pred             CCCCccEEeeeCCh
Q 040713          106 LPSSLLQLWIWGCP  119 (157)
Q Consensus       106 l~~~L~~L~i~~c~  119 (157)
                        ++|+.|++++++
T Consensus       237 --~~L~~L~l~~N~  248 (317)
T 3o53_A          237 --QNLEHFDLRGNG  248 (317)
T ss_dssp             --TTCCEEECTTCC
T ss_pred             --CCCCEEEccCCC
Confidence              567777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.81  E-value=3.8e-08  Score=80.42  Aligned_cols=103  Identities=18%  Similarity=0.237  Sum_probs=64.4

Q ss_pred             CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|+.|+++++ .+..++ ..+..+++|++|++++ .+..+++..+  .++|+.|++++| .+. .+|..  .+.++++|
T Consensus        75 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~--~~~~l~~L  149 (597)
T 3oja_B           75 RQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN-DLS-SLPRG--IFHNTPKL  149 (597)
T ss_dssp             CCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCC-CCC-CCCHH--HhccCCCC
Confidence            56777777775 455544 3667777788888877 7777665432  357788888765 555 56653  35677778


Q ss_pred             CEEEEecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++ | .+..++. .+..+      ++|+.|++++|.
T Consensus       150 ~~L~Ls~-N-~l~~~~~~~~~~l------~~L~~L~L~~N~  182 (597)
T 3oja_B          150 TTLSMSN-N-NLERIEDDTFQAT------TSLQNLQLSSNR  182 (597)
T ss_dssp             CEEECCS-S-CCCBCCTTTTTTC------TTCCEEECTTSC
T ss_pred             CEEEeeC-C-cCCCCChhhhhcC------CcCcEEECcCCC
Confidence            8888877 3 3333322 23333      567777776653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.81  E-value=2.9e-08  Score=78.60  Aligned_cols=77  Identities=22%  Similarity=0.317  Sum_probs=36.4

Q ss_pred             CcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            5 KLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      +++.|+++++ .+..+ +..+.++++|++|++++ .+..+++..+  .++|++|+++++ .++ .+|..  .+.++++|+
T Consensus        33 ~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L~  107 (477)
T 2id5_A           33 ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLK-LIPLG--VFTGLSNLT  107 (477)
T ss_dssp             TCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-SCCTT--SSTTCTTCC
T ss_pred             CCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCC-ccCcc--cccCCCCCC
Confidence            5556666553 34443 23445555555555555 4444433222  235555555543 333 34332  344455555


Q ss_pred             EEEEec
Q 040713           81 HLTISG   86 (157)
Q Consensus        81 ~L~i~~   86 (157)
                      +|++++
T Consensus       108 ~L~Ls~  113 (477)
T 2id5_A          108 KLDISE  113 (477)
T ss_dssp             EEECTT
T ss_pred             EEECCC
Confidence            555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.80  E-value=2e-08  Score=81.69  Aligned_cols=79  Identities=27%  Similarity=0.384  Sum_probs=41.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|++|+++++ .++.+|.++..+++|++|++++ .+..+++..  ..++|+.|++++|.... .++..  .+..+++|+
T Consensus       278 ~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~--~~~~l~~L~  353 (606)
T 3t6q_A          278 SGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL-ELGTG--CLENLENLR  353 (606)
T ss_dssp             TTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC-BCCSS--TTTTCTTCC
T ss_pred             cCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc-ccchh--hhhccCcCC
Confidence            45666666664 4555666666666666666665 554443321  12455666665543222 33332  345555666


Q ss_pred             EEEEec
Q 040713           81 HLTISG   86 (157)
Q Consensus        81 ~L~i~~   86 (157)
                      +|++++
T Consensus       354 ~L~l~~  359 (606)
T 3t6q_A          354 ELDLSH  359 (606)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            666655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.80  E-value=3.2e-08  Score=78.40  Aligned_cols=79  Identities=25%  Similarity=0.369  Sum_probs=59.8

Q ss_pred             CCCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|++|+++++ .+..+ |..+.++++|++|++++ .+..+|...+  .++|+.|+++++ .+. .++..  .+..+++
T Consensus        55 l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~-~~~~~--~~~~l~~  129 (477)
T 2id5_A           55 FPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISEN-KIV-ILLDY--MFQDLYN  129 (477)
T ss_dssp             CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTS-CCC-EECTT--TTTTCTT
T ss_pred             CCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCC-ccc-cCChh--Hcccccc
Confidence            368999999986 55555 67788999999999998 8888887543  368999999875 444 33332  5777888


Q ss_pred             cCEEEEec
Q 040713           79 LRHLTISG   86 (157)
Q Consensus        79 L~~L~i~~   86 (157)
                      |++|++++
T Consensus       130 L~~L~l~~  137 (477)
T 2id5_A          130 LKSLEVGD  137 (477)
T ss_dssp             CCEEEECC
T ss_pred             CCEEECCC
Confidence            88888887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.79  E-value=1.5e-08  Score=81.39  Aligned_cols=103  Identities=20%  Similarity=0.270  Sum_probs=69.1

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .++.+ |..+.++++|++|++++ .+..+++..+  .++|++|++++| .+. .++..  .++++++|
T Consensus        26 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~-~~~~~--~~~~l~~L  100 (549)
T 2z81_A           26 AAMKSLDLSFN-KITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLS-SLSSS--WFGPLSSL  100 (549)
T ss_dssp             TTCCEEECCSS-CCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC-SCCHH--HHTTCTTC
T ss_pred             CCccEEECcCC-ccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCC-ccC-ccCHH--HhccCCCC
Confidence            47899999886 45555 56778889999999998 7777765433  368888888875 454 44432  47788888


Q ss_pred             CEEEEecCCCCCcc--cCcccccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVS--FPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~--lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++ | .+..  +|..+..+      ++|++|++++|.
T Consensus       101 ~~L~Ls~-n-~l~~~~~~~~~~~l------~~L~~L~L~~n~  134 (549)
T 2z81_A          101 KYLNLMG-N-PYQTLGVTSLFPNL------TNLQTLRIGNVE  134 (549)
T ss_dssp             CEEECTT-C-CCSSSCSSCSCTTC------TTCCEEEEEESS
T ss_pred             cEEECCC-C-cccccchhhhhhcc------CCccEEECCCCc
Confidence            8888887 4 3432  22223333      566666666654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.79  E-value=1.2e-08  Score=85.59  Aligned_cols=38  Identities=21%  Similarity=0.185  Sum_probs=22.4

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-ccc
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELP   40 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~   40 (157)
                      .++|++|++++|.....+|..+.++++|++|++++ .+.
T Consensus       393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  431 (768)
T 3rgz_A          393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS  431 (768)
T ss_dssp             TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence            34667777766543335566666666666666665 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.79  E-value=1.4e-08  Score=82.61  Aligned_cols=40  Identities=23%  Similarity=0.226  Sum_probs=21.0

Q ss_pred             CCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           73 FHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        73 l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +..+++|++|++++  +.+..+|..+..+     +.+|+.|++.+++
T Consensus       517 ~~~l~~L~~L~l~~--N~l~~~p~~~~~l-----~~~L~~l~l~~N~  556 (606)
T 3vq2_A          517 YNQLYSLSTLDCSF--NRIETSKGILQHF-----PKSLAFFNLTNNS  556 (606)
T ss_dssp             TTTCTTCCEEECTT--SCCCCEESCGGGS-----CTTCCEEECCSCC
T ss_pred             ccCCCcCCEEECCC--CcCcccCHhHhhh-----cccCcEEEccCCC
Confidence            44555555555554  2244444433333     2468888887754

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.79  E-value=3.2e-08  Score=80.49  Aligned_cols=77  Identities=23%  Similarity=0.355  Sum_probs=35.3

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhh-hhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSM-IERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~l-p~~~~~l~~l~~   78 (157)
                      +++++|+++++ .+..++. .+.++++|++|++++ .+..+++..+  .++|++|++++| .+. .+ |.   .++++++
T Consensus        32 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n-~l~-~~~p~---~~~~l~~  105 (606)
T 3vq2_A           32 SSTKNIDLSFN-PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN-PIQ-SFSPG---SFSGLTS  105 (606)
T ss_dssp             TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCC-CCCTT---SSTTCTT
T ss_pred             CCcCEEECCCC-CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC-ccc-ccChh---hcCCccc
Confidence            35555555553 3333332 445555555555555 4444433322  235555555543 233 22 22   3444455


Q ss_pred             cCEEEEec
Q 040713           79 LRHLTISG   86 (157)
Q Consensus        79 L~~L~i~~   86 (157)
                      |++|++++
T Consensus       106 L~~L~L~~  113 (606)
T 3vq2_A          106 LENLVAVE  113 (606)
T ss_dssp             CCEEECTT
T ss_pred             CCEEEccC
Confidence            55555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.79  E-value=1.9e-08  Score=82.91  Aligned_cols=102  Identities=19%  Similarity=0.281  Sum_probs=62.9

Q ss_pred             CCcceEeeecCcCCcccCccc-CCCCcccEEEeeC-cccCCCCCCCC--C-------CccEEEecCCCCchhhhhhcccc
Q 040713            4 AKLTRLEIYDCKRLEALPKGL-HNLTSLQELKIGG-ELPSLEEDGLP--T-------NLHSLWIDGNKKIWKSMIERGRG   72 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~-~l~~lp~~~~~--~-------~L~~L~i~~c~~l~~~lp~~~~~   72 (157)
                      ++|++|++++| .+..+|..+ ..+++|+.|++++ .+..+|...+.  .       +|+.|++++| .+. .+|..   
T Consensus       433 ~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~lp~~---  506 (636)
T 4eco_A          433 INVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLT-KLSDD---  506 (636)
T ss_dssp             CCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSS-CCC-BCCGG---
T ss_pred             CCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCC-cCC-ccChh---
Confidence            35666666664 455566544 3467777777777 66666654332  1       6778888764 555 66653   


Q ss_pred             CC--CCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           73 FH--RFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        73 l~--~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +.  .+++|++|++++  +.+..+|..+..+      ++|+.|+++++.
T Consensus       507 ~~~~~l~~L~~L~Ls~--N~l~~ip~~~~~l------~~L~~L~Ls~N~  547 (636)
T 4eco_A          507 FRATTLPYLVGIDLSY--NSFSKFPTQPLNS------STLKGFGIRNQR  547 (636)
T ss_dssp             GSTTTCTTCCEEECCS--SCCSSCCCGGGGC------SSCCEEECCSCB
T ss_pred             hhhccCCCcCEEECCC--CCCCCcChhhhcC------CCCCEEECCCCc
Confidence            54  778888888887  3455566555444      567777775543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.79  E-value=4.6e-08  Score=78.55  Aligned_cols=96  Identities=21%  Similarity=0.271  Sum_probs=50.5

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|++++| .++.+|..+..+++|++|++++ .+..+|.. .+++|+.|++++| .++ .+      ...+++|++|
T Consensus       387 ~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-~~~~L~~L~Ls~N-~l~-~~------~~~l~~L~~L  456 (549)
T 2z81_A          387 KNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTC-IPQTLEVLDVSNN-NLD-SF------SLFLPRLQEL  456 (549)
T ss_dssp             TTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSCCSCCCTT-SCTTCSEEECCSS-CCS-CC------CCCCTTCCEE
T ss_pred             CCCCEEECCCC-CCccCChhhcccccccEEECCCCCcccccch-hcCCceEEECCCC-Chh-hh------cccCChhcEE
Confidence            35555555554 4445555555555666666655 55544432 2345555555554 333 22      2356677777


Q ss_pred             EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      ++++  +.+..+|.       .+..++|+.|++++|
T Consensus       457 ~Ls~--N~l~~ip~-------~~~l~~L~~L~Ls~N  483 (549)
T 2z81_A          457 YISR--NKLKTLPD-------ASLFPVLLVMKISRN  483 (549)
T ss_dssp             ECCS--SCCSSCCC-------GGGCTTCCEEECCSS
T ss_pred             ECCC--CccCcCCC-------cccCccCCEEecCCC
Confidence            7776  34444543       222356666666655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.78  E-value=1.8e-08  Score=81.77  Aligned_cols=105  Identities=25%  Similarity=0.289  Sum_probs=76.4

Q ss_pred             CCcceEeeecCcCCcc-cCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEA-LPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|+.|+++++..... .|..+..+++|+.|++++ .+..+++..+  .++|+.|+++++ ++. .++..  .+.++++|
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~-~l~~~--~~~~l~~L  544 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFF-SLDTF--PYKCLNSL  544 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCC-BCCCG--GGTTCTTC
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCC-CCChh--HHhCCCCC
Confidence            5788888887654443 566778899999999998 8888876544  368999999885 666 66554  57888999


Q ss_pred             CEEEEecCCCCCcccC-cccccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSFP-PELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp-~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++  +.+..++ ..+..+     +++|+.|+++++|
T Consensus       545 ~~L~Ls~--N~l~~~~~~~l~~l-----~~~L~~L~L~~Np  578 (635)
T 4g8a_A          545 QVLDYSL--NHIMTSKKQELQHF-----PSSLAFLNLTQND  578 (635)
T ss_dssp             CEEECTT--SCCCBCCSSCTTCC-----CTTCCEEECTTCC
T ss_pred             CEEECCC--CcCCCCCHHHHHhh-----hCcCCEEEeeCCC
Confidence            9999998  4444443 233333     3689999998754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.78  E-value=3.6e-08  Score=81.02  Aligned_cols=75  Identities=23%  Similarity=0.279  Sum_probs=39.5

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|+.|++++| .+..++. +..+++|+.|++++ .+..++.-...++|+.|++++| .+. .++    .+..+++|+.|
T Consensus        65 ~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~-~l~----~l~~l~~L~~L  136 (605)
T 1m9s_A           65 PNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN-GIS-DIN----GLVHLPQLESL  136 (605)
T ss_dssp             TTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTS-CCC-CCG----GGGGCTTCSEE
T ss_pred             CCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCC-CCC-CCc----cccCCCccCEE
Confidence            46677777664 4555544 55666666666666 5555543333345556655553 333 332    23444555555


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++++
T Consensus       137 ~Ls~  140 (605)
T 1m9s_A          137 YLGN  140 (605)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            5544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.78  E-value=1.3e-08  Score=85.38  Aligned_cols=128  Identities=15%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC-CCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS-LEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~-lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|++|++++|.....+|..+..+++|+.|++++ .+.. +|.. +..++|+.|++++|. +...+|.   .+.++++|+
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~---~l~~l~~L~  493 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPS---GLSNCTNLN  493 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCG---GGGGCTTCC
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-ccCcCCH---HHhcCCCCC
Confidence            4677777777643345667777777777777777 5553 3322 123577777777753 3325555   366777777


Q ss_pred             EEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713           81 HLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI  147 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~  147 (157)
                      +|++++ |.....+|.++..+      ++|+.|++++|....     .....+..+.++..+.+.+.
T Consensus       494 ~L~L~~-N~l~~~~p~~~~~l------~~L~~L~L~~N~l~~-----~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          494 WISLSN-NRLTGEIPKWIGRL------ENLAILKLSNNSFSG-----NIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             EEECCS-SCCCSCCCGGGGGC------TTCCEEECCSSCCEE-----ECCGGGGGCTTCCEEECCSS
T ss_pred             EEEccC-CccCCcCChHHhcC------CCCCEEECCCCcccC-----cCCHHHcCCCCCCEEECCCC
Confidence            777777 55444666666655      678888887775321     11223455666777777654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.78  E-value=5.7e-09  Score=72.41  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=80.8

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|+.|+++++ .+..+ ..+..+++|++|++++ .+..+|...  ..++|+.|+++++ .+. .+|.. ..+..+++|+
T Consensus        42 ~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~-~~~~~-~~l~~l~~L~  116 (176)
T 1a9n_A           42 DQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLV-ELGDL-DPLASLKSLT  116 (176)
T ss_dssp             TCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCC-CGGGG-GGGGGCTTCC
T ss_pred             CCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCC-cCC-cchhh-HhhhcCCCCC
Confidence            48999999996 67777 6788999999999999 888887643  2469999999986 565 66641 0367899999


Q ss_pred             EEEEecCCCCCcccCcc----cccCCCCCCCCCccEEeeeCChh
Q 040713           81 HLTISGCDDDMVSFPPE----LKYFPEKGLPSSLLQLWIWGCPL  120 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp~~----l~~lp~~~l~~~L~~L~i~~c~~  120 (157)
                      +|++++  +.+..+|..    +..+      ++|+.|++.++..
T Consensus       117 ~L~l~~--N~i~~~~~~~~~~~~~l------~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          117 YLCILR--NPVTNKKHYRLYVIYKV------PQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCS--SGGGGSTTHHHHHHHHC------TTCSEETTEECCH
T ss_pred             EEEecC--CCCCCcHhHHHHHHHHC------CccceeCCCcCCH
Confidence            999998  445566643    4444      6899999988864

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.77  E-value=2.2e-08  Score=78.64  Aligned_cols=103  Identities=20%  Similarity=0.362  Sum_probs=78.7

Q ss_pred             CCCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhh-hhccccCCCCC
Q 040713            3 CAKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSM-IERGRGFHRFS   77 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~l-p~~~~~l~~l~   77 (157)
                      .++|++|++++| .+..+ |..+..+++|++|++++ .+..++...  ..++|+.|++++| .+. .+ |.   .+..++
T Consensus       298 l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~---~~~~l~  371 (455)
T 3v47_A          298 FTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIR-ALGDQ---SFLGLP  371 (455)
T ss_dssp             CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCC-EECTT---TTTTCT
T ss_pred             CCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-ccc-ccChh---hccccc
Confidence            368999999997 45554 66888999999999999 887776543  2479999999986 555 44 44   588999


Q ss_pred             ccCEEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713           78 SLRHLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        78 ~L~~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +|++|++++  +.+..+|.. +..+      ++|+.|++++++
T Consensus       372 ~L~~L~L~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~  406 (455)
T 3v47_A          372 NLKELALDT--NQLKSVPDGIFDRL------TSLQKIWLHTNP  406 (455)
T ss_dssp             TCCEEECCS--SCCSCCCTTTTTTC------TTCCEEECCSSC
T ss_pred             cccEEECCC--CccccCCHhHhccC------CcccEEEccCCC
Confidence            999999998  456555542 2333      799999998764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.77  E-value=4.8e-08  Score=75.14  Aligned_cols=108  Identities=20%  Similarity=0.262  Sum_probs=74.4

Q ss_pred             CCCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|++|+++++ .+..++. .+..+++|+.|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++
T Consensus        63 l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~-~~~~~--~~~~l~~  137 (361)
T 2xot_A           63 LTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN-HIV-VVDRN--AFEDMAQ  137 (361)
T ss_dssp             CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC-EECTT--TTTTCTT
T ss_pred             ccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCC-ccc-EECHH--HhCCccc
Confidence            468888999885 6666664 577888999999998 8887776543  368899999875 555 45433  5778889


Q ss_pred             cCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           79 LRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++|++++  +.+..+|..+-  ....-.++|+.|+++++.
T Consensus       138 L~~L~L~~--N~l~~l~~~~~--~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          138 LQKLYLSQ--NQISRFPVELI--KDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCEEECCS--SCCCSCCGGGT--C----CTTCCEEECCSSC
T ss_pred             CCEEECCC--CcCCeeCHHHh--cCcccCCcCCEEECCCCC
Confidence            99999987  55665654320  000113688888888754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.75  E-value=2.7e-08  Score=76.16  Aligned_cols=86  Identities=19%  Similarity=0.379  Sum_probs=62.3

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cc-cCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-EL-PSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l-~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      +++++|+++++ .++.+|. .+.++++|++|++++ .+ ..++.+.+.  +++..+.+.+++++. .++..  .+..+++
T Consensus        30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~--~f~~l~~  105 (350)
T 4ay9_X           30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPE--AFQNLPN  105 (350)
T ss_dssp             TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTT--SBCCCTT
T ss_pred             CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCch--hhhhccc
Confidence            58999999994 7888886 468999999999998 65 445554432  466665555667776 66554  5788888


Q ss_pred             cCEEEEecCCCCCcccC
Q 040713           79 LRHLTISGCDDDMVSFP   95 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp   95 (157)
                      |++|++++  +.+..+|
T Consensus       106 L~~L~l~~--n~l~~~~  120 (350)
T 4ay9_X          106 LQYLLISN--TGIKHLP  120 (350)
T ss_dssp             CCEEEEEE--ECCSSCC
T ss_pred             cccccccc--cccccCC
Confidence            88888887  4454444

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.75  E-value=8e-08  Score=72.79  Aligned_cols=77  Identities=21%  Similarity=0.323  Sum_probs=50.0

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      ++|++|++++| .+..+ |..+..+++|++|++++ .+..+|...+ ++|+.|+++++ .+. .++..  .+..+++|++
T Consensus        78 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n-~i~-~~~~~--~~~~l~~L~~  151 (332)
T 2ft3_A           78 QHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDN-RIR-KVPKG--VFSGLRNMNC  151 (332)
T ss_dssp             TTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSS-CCC-CCCSG--GGSSCSSCCE
T ss_pred             CCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCC-ccC-ccCHh--HhCCCccCCE
Confidence            45666666664 34443 55666777777777777 6666665444 57777777764 454 45543  4677888888


Q ss_pred             EEEec
Q 040713           82 LTISG   86 (157)
Q Consensus        82 L~i~~   86 (157)
                      |++++
T Consensus       152 L~l~~  156 (332)
T 2ft3_A          152 IEMGG  156 (332)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            88877

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.74  E-value=9.5e-08  Score=72.25  Aligned_cols=77  Identities=18%  Similarity=0.277  Sum_probs=48.1

Q ss_pred             CCcceEeeecCcCCc---ccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLE---ALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~---~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|+.|+++++. +.   ..+..+..+++|+.|++++ .+..+|.... ++|+.|+++++ .+. .++..  .+..+++|
T Consensus       145 ~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n-~l~-~~~~~--~~~~l~~L  218 (330)
T 1xku_A          145 NQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDGN-KIT-KVDAA--SLKGLNNL  218 (330)
T ss_dssp             TTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECTTS-CCC-EECTG--GGTTCTTC
T ss_pred             ccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCcccc-ccCCEEECCCC-cCC-ccCHH--HhcCCCCC
Confidence            456666665542 22   2344556777778888777 7777765433 57888888775 444 33222  46677778


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       219 ~~L~Ls~  225 (330)
T 1xku_A          219 AKLGLSF  225 (330)
T ss_dssp             CEEECCS
T ss_pred             CEEECCC
Confidence            8888776

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.73  E-value=9.2e-09  Score=69.25  Aligned_cols=99  Identities=22%  Similarity=0.312  Sum_probs=74.1

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccC-CCCCC-CCCCccEEEecCCCCchhhhh--hccccCCCCC
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPS-LEEDG-LPTNLHSLWIDGNKKIWKSMI--ERGRGFHRFS   77 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~-lp~~~-~~~~L~~L~i~~c~~l~~~lp--~~~~~l~~l~   77 (157)
                      .++|+.|++++| .+..+ ..+..+++|++|++++ .+.. +|... ..++|+.|++++| .++ .++  .   .+..++
T Consensus        41 l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N-~i~-~~~~~~---~~~~l~  113 (149)
T 2je0_A           41 FEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIK-DLSTIE---PLKKLE  113 (149)
T ss_dssp             CTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTS-CCC-SHHHHG---GGGGCT
T ss_pred             cCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCC-cCC-ChHHHH---HHhhCC
Confidence            368999999996 67777 6788999999999999 8777 44321 2469999999986 565 544  4   578899


Q ss_pred             ccCEEEEecCCCCCcccCc----ccccCCCCCCCCCccEEeee
Q 040713           78 SLRHLTISGCDDDMVSFPP----ELKYFPEKGLPSSLLQLWIW  116 (157)
Q Consensus        78 ~L~~L~i~~~c~~l~~lp~----~l~~lp~~~l~~~L~~L~i~  116 (157)
                      +|++|++++ | .+..+|.    .+..+      ++|+.|+++
T Consensus       114 ~L~~L~l~~-N-~l~~~~~~~~~~~~~l------~~L~~L~l~  148 (149)
T 2je0_A          114 NLKSLDLFN-C-EVTNLNDYRENVFKLL------PQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTT-C-GGGGSTTHHHHHHHHC------TTCCEETTB
T ss_pred             CCCEEeCcC-C-cccchHHHHHHHHHHC------CCcccccCC
Confidence            999999998 4 4555543    23444      688888765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.73  E-value=1.3e-08  Score=76.95  Aligned_cols=92  Identities=18%  Similarity=0.187  Sum_probs=44.7

Q ss_pred             CCcceEeeecCcCCc-ccCcccCCCCcccEEEeeC-ccc-CCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLE-ALPKGLHNLTSLQELKIGG-ELP-SLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~-~l~-~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|++++++.+. .+|..+.++++|++|++++ .+. .+|.. +..++|++|+++++ .+...+|.   .+..+++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~---~~~~l~~L  151 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPP---SISSLPNL  151 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-EEESCCCG---GGGGCTTC
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC-ccCCcCCh---HHhcCCCC
Confidence            355555555322332 4555555555666666655 444 23321 12246666666654 33223444   35566666


Q ss_pred             CEEEEecCCCCCcccCccccc
Q 040713           80 RHLTISGCDDDMVSFPPELKY  100 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~l~~  100 (157)
                      ++|++++ +.-...+|..+..
T Consensus       152 ~~L~L~~-N~l~~~~p~~l~~  171 (313)
T 1ogq_A          152 VGITFDG-NRISGAIPDSYGS  171 (313)
T ss_dssp             CEEECCS-SCCEEECCGGGGC
T ss_pred             CeEECcC-CcccCcCCHHHhh
Confidence            6666666 3322244443333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.73  E-value=3.6e-08  Score=78.87  Aligned_cols=100  Identities=17%  Similarity=0.252  Sum_probs=56.6

Q ss_pred             CCcceEeeecCcCCc---ccCcccCCCCcccEEEeeC-cccC-CCCCC--CCCCccEEEecCCCCchhhhhhccccCCCC
Q 040713            4 AKLTRLEIYDCKRLE---ALPKGLHNLTSLQELKIGG-ELPS-LEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRF   76 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~---~lp~~~~~l~~L~~L~l~~-~l~~-lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l   76 (157)
                      ++|++|++++| .+.   .+|..+..+++|++|++++ .+.. +|...  ..++|+.|++++|. +...+|..   +.  
T Consensus       348 ~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---l~--  420 (520)
T 2z7x_B          348 TELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRC---LP--  420 (520)
T ss_dssp             SSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC-CCGGGGGS---CC--
T ss_pred             CCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC-CCcchhhh---hc--
Confidence            57888888875 444   3455667788888888887 6665 65432  23567777776653 32234431   21  


Q ss_pred             CccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           77 SSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        77 ~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      ++|++|++++  +.+..+|..+..+      ++|++|++++|
T Consensus       421 ~~L~~L~Ls~--N~l~~ip~~~~~l------~~L~~L~L~~N  454 (520)
T 2z7x_B          421 PRIKVLDLHS--NKIKSIPKQVVKL------EALQELNVASN  454 (520)
T ss_dssp             TTCCEEECCS--SCCCCCCGGGGGC------TTCCEEECCSS
T ss_pred             ccCCEEECCC--CcccccchhhhcC------CCCCEEECCCC
Confidence            4666666665  3444555433333      34555555444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.73  E-value=5.2e-08  Score=78.46  Aligned_cols=54  Identities=22%  Similarity=0.365  Sum_probs=26.7

Q ss_pred             CcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCC
Q 040713            5 KLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGN   59 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c   59 (157)
                      +++.|+++++ .++.++ ..+.++++|++|++++ .+..++...+  .++|++|+++++
T Consensus        29 ~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n   86 (570)
T 2z63_A           29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN   86 (570)
T ss_dssp             SCCEEECCSC-CCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             cccEEEccCC-ccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence            5566666553 344433 2445555555665555 4544443322  245555555543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.73  E-value=8.4e-08  Score=76.70  Aligned_cols=104  Identities=17%  Similarity=0.111  Sum_probs=52.2

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCC----CCCCCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEE----DGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~----~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      ++|++|++++|.--..+|..+..+++|++|++++ .+..++.    -+..++|+.|++++| .+...+|..  .+..+++
T Consensus       324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~--~~~~l~~  400 (520)
T 2z7x_B          324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKG--DCSWTKS  400 (520)
T ss_dssp             CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGC--SCCCCTT
T ss_pred             CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccc--hhccCcc
Confidence            3555555555432222455555666666666665 4443221    122245666666554 333125543  3455566


Q ss_pred             cCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           79 LRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++|++++ |.-...+|.        .++++|+.|++++|.
T Consensus       401 L~~L~Ls~-N~l~~~~~~--------~l~~~L~~L~Ls~N~  432 (520)
T 2z7x_B          401 LLSLNMSS-NILTDTIFR--------CLPPRIKVLDLHSNK  432 (520)
T ss_dssp             CCEEECCS-SCCCGGGGG--------SCCTTCCEEECCSSC
T ss_pred             CCEEECcC-CCCCcchhh--------hhcccCCEEECCCCc
Confidence            66666665 332222221        122678888888764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.72  E-value=1.6e-08  Score=80.93  Aligned_cols=37  Identities=11%  Similarity=0.074  Sum_probs=18.3

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccC
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPS   41 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~   41 (157)
                      ++|+.|++++| .+..+ |..++.+++|+.|++++ .+..
T Consensus       120 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A          120 QGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDT  158 (487)
T ss_dssp             SSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred             CCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence            35566666554 23332 33444555555555555 4443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.72  E-value=9.3e-08  Score=67.25  Aligned_cols=121  Identities=17%  Similarity=0.265  Sum_probs=84.9

Q ss_pred             ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC---CCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG---LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~---~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      +.+++++ ..++.+|..+.  .+|++|++++ .+..++..+   ..++|+.|+++++ .++ .++..  .+.++++|++|
T Consensus        11 ~~l~~s~-~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~--~~~~l~~L~~L   83 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLT-GIEPN--AFEGASHIQEL   83 (192)
T ss_dssp             TEEECTT-SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCC-CBCTT--TTTTCTTCCEE
T ss_pred             CEEEcCC-CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCC-CcCHh--HcCCcccCCEE
Confidence            5678887 47888997664  3899999999 888888643   3479999999885 666 45332  58899999999


Q ss_pred             EEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713           83 TISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI  147 (157)
Q Consensus        83 ~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~  147 (157)
                      ++++  +.+..++.. +..+      ++|++|+++++.- ..    .....+..+.++..+.+.+.
T Consensus        84 ~Ls~--N~l~~~~~~~~~~l------~~L~~L~L~~N~l-~~----~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           84 QLGE--NKIKEISNKMFLGL------HQLKTLNLYDNQI-SC----VMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ECCS--CCCCEECSSSSTTC------TTCCEEECCSSCC-CE----ECTTSSTTCTTCCEEECTTC
T ss_pred             ECCC--CcCCccCHHHhcCC------CCCCEEECCCCcC-Ce----eCHHHhhcCCCCCEEEeCCC
Confidence            9998  556555432 3333      7999999988752 11    11223455666777776653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.71  E-value=8.5e-08  Score=77.97  Aligned_cols=78  Identities=18%  Similarity=0.171  Sum_probs=49.6

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +++++|+++++ .++.+ |..+.++++|++|++++ .+..+.+..+  .++|++|++++| .+....|.   .+.++++|
T Consensus        33 ~~l~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~---~~~~l~~L  107 (606)
T 3t6q_A           33 NSTECLEFSFN-VLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAET---ALSGPKAL  107 (606)
T ss_dssp             TTCCEEECTTC-CCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTT---TTSSCTTC
T ss_pred             CcCcEEEccCC-ccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChh---hhcccccc
Confidence            46777888775 45555 45667778888888877 6666544432  357777777765 34312233   46667777


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       108 ~~L~L~~  114 (606)
T 3t6q_A          108 KHLFFIQ  114 (606)
T ss_dssp             CEEECTT
T ss_pred             cEeeccc
Confidence            7777776

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.70  E-value=6e-08  Score=73.08  Aligned_cols=53  Identities=23%  Similarity=0.374  Sum_probs=28.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG   58 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~   58 (157)
                      ++|++|+++++ .+..++ .+..+++|+.|++++ .+..++.-...++|+.|++++
T Consensus        85 ~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~  138 (308)
T 1h6u_A           85 TKITELELSGN-PLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL  138 (308)
T ss_dssp             CSCCEEECCSC-CCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCCEEEccCC-cCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCC
Confidence            46666666664 344443 355566666666665 555444322334555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.70  E-value=3.5e-08  Score=81.30  Aligned_cols=105  Identities=15%  Similarity=0.190  Sum_probs=75.4

Q ss_pred             CCCcceEeeecCcCCcc------------------cCcccC--CCCcccEEEeeC-cc-cCCCCC-CCCCCccEEEecCC
Q 040713            3 CAKLTRLEIYDCKRLEA------------------LPKGLH--NLTSLQELKIGG-EL-PSLEED-GLPTNLHSLWIDGN   59 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~------------------lp~~~~--~l~~L~~L~l~~-~l-~~lp~~-~~~~~L~~L~i~~c   59 (157)
                      .++|++|+++++. +..                  +|..++  ++++|++|++++ .+ ..+|.. +..++|+.|++++|
T Consensus       205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            3689999999974 666                  999998  999999999998 54 455543 23469999999987


Q ss_pred             CCchh-hhhhccccCCCC------CccCEEEEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCCh
Q 040713           60 KKIWK-SMIERGRGFHRF------SSLRHLTISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        60 ~~l~~-~lp~~~~~l~~l------~~L~~L~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ..+.. .+|.   .++.+      ++|++|++++ | .+..+|.  .+..+      ++|+.|++++|.
T Consensus       284 ~~l~~~~lp~---~~~~L~~~~~l~~L~~L~L~~-n-~l~~ip~~~~l~~l------~~L~~L~L~~N~  341 (636)
T 4eco_A          284 RGISGEQLKD---DWQALADAPVGEKIQIIYIGY-N-NLKTFPVETSLQKM------KKLGMLECLYNQ  341 (636)
T ss_dssp             TTSCHHHHHH---HHHHHHHSGGGGTCCEEECCS-S-CCSSCCCHHHHTTC------TTCCEEECCSCC
T ss_pred             CCCccccchH---HHHhhhccccCCCCCEEECCC-C-cCCccCchhhhccC------CCCCEEeCcCCc
Confidence            54664 5776   35554      8899999988 4 4556765  45554      566666666553

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.69  E-value=9.3e-08  Score=72.30  Aligned_cols=77  Identities=18%  Similarity=0.307  Sum_probs=40.5

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      ++|++|+++++ .+..+ |..+..+++|++|++++ .+..+|...+ ++|+.|+++++ .+. .++..  .+..+++|++
T Consensus        76 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l~~n-~l~-~~~~~--~~~~l~~L~~  149 (330)
T 1xku_A           76 KNLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP-KTLQELRVHEN-EIT-KVRKS--VFNGLNQMIV  149 (330)
T ss_dssp             TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC-TTCCEEECCSS-CCC-BBCHH--HHTTCTTCCE
T ss_pred             CCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc-ccccEEECCCC-ccc-ccCHh--HhcCCccccE
Confidence            34555555553 33333 44555556666666655 5555554332 46666666553 333 33322  3556667777


Q ss_pred             EEEec
Q 040713           82 LTISG   86 (157)
Q Consensus        82 L~i~~   86 (157)
                      |++++
T Consensus       150 L~l~~  154 (330)
T 1xku_A          150 VELGT  154 (330)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            77766

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.69  E-value=2.6e-07  Score=63.83  Aligned_cols=122  Identities=21%  Similarity=0.291  Sum_probs=85.2

Q ss_pred             cceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      .+.+++.+ ..++.+|..+  .++|+.|++++ .+..++...+  .++|+.|+++++ .+. .++..  .+..+++|++|
T Consensus         9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~-~~~~~--~~~~l~~L~~L   81 (177)
T 2o6r_A            9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQ-SLPDG--VFDKLTKLTIL   81 (177)
T ss_dssp             TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCTT--TTTTCTTCCEE
T ss_pred             CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cce-EeChh--HccCCCccCEE
Confidence            35677776 4678888654  47999999999 8888887543  479999999885 676 66654  56889999999


Q ss_pred             EEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713           83 TISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI  147 (157)
Q Consensus        83 ~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~  147 (157)
                      ++++  +.+..+|.. +..+      ++|+.|+++++. +..    .....+..+.++..+.+.+.
T Consensus        82 ~l~~--N~l~~~~~~~~~~l------~~L~~L~l~~N~-l~~----~~~~~~~~l~~L~~L~l~~N  134 (177)
T 2o6r_A           82 YLHE--NKLQSLPNGVFDKL------TQLKELALDTNQ-LKS----VPDGIFDRLTSLQKIWLHTN  134 (177)
T ss_dssp             ECCS--SCCCCCCTTTTTTC------TTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSS
T ss_pred             ECCC--CCccccCHHHhhCC------cccCEEECcCCc-ceE----eCHHHhcCCcccCEEEecCC
Confidence            9998  445555432 2333      799999998874 221    11222455667777777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.69  E-value=6.7e-08  Score=77.80  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=17.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG   37 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~   37 (157)
                      ++|++|++++| .+..++..+..+++|++|++++
T Consensus       373 ~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~  405 (570)
T 2z63_A          373 TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQH  405 (570)
T ss_dssp             SCCCEEECCSC-SEEEEEEEEETCTTCCEEECTT
T ss_pred             CccCEEECCCC-ccccccccccccCCCCEEEccC
Confidence            45666666654 3444444444555555555555

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.69  E-value=1.4e-07  Score=76.42  Aligned_cols=100  Identities=21%  Similarity=0.286  Sum_probs=72.4

Q ss_pred             CCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..++ ..+.++++|++|++++ .+..++++.+  .++|++|+++++ .++ .+|.   .  .+++|
T Consensus        52 ~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~-~lp~---~--~l~~L  123 (562)
T 3a79_B           52 PRTKALSLSQN-SISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQ-NISC---C--PMASL  123 (562)
T ss_dssp             TTCCEEECCSS-CCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCC-EECS---C--CCTTC
T ss_pred             CCcCEEECCCC-CccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCC-ccCc---c--ccccC
Confidence            58888888886 466655 5778888899999988 7777765543  368889999875 566 6775   2  68888


Q ss_pred             CEEEEecCCCCCcccC--cccccCCCCCCCCCccEEeeeCCh
Q 040713           80 RHLTISGCDDDMVSFP--PELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp--~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|++++  +.+..+|  ..+..+      ++|++|+++++.
T Consensus       124 ~~L~Ls~--N~l~~l~~p~~~~~l------~~L~~L~L~~n~  157 (562)
T 3a79_B          124 RHLDLSF--NDFDVLPVCKEFGNL------TKLTFLGLSAAK  157 (562)
T ss_dssp             SEEECCS--SCCSBCCCCGGGGGC------TTCCEEEEECSB
T ss_pred             CEEECCC--CCccccCchHhhccc------CcccEEecCCCc
Confidence            9999888  4455443  344444      688999888754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.69  E-value=3e-08  Score=74.86  Aligned_cols=90  Identities=26%  Similarity=0.345  Sum_probs=62.6

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-ccc-CCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCC-cc
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELP-SLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFS-SL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~-~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~-~L   79 (157)
                      ++|++|+++++.--..+|..+.++++|++|++++ .+. .+|.. +..++|++|+++++ .+...+|.   .+..++ +|
T Consensus       101 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~---~l~~l~~~L  176 (313)
T 1ogq_A          101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN-RISGAIPD---SYGSFSKLF  176 (313)
T ss_dssp             TTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS-CCEEECCG---GGGCCCTTC
T ss_pred             CCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCC-cccCcCCH---HHhhhhhcC
Confidence            6899999998643347888888999999999998 666 34432 23468999999886 44335666   467777 88


Q ss_pred             CEEEEecCCCCCcccCccc
Q 040713           80 RHLTISGCDDDMVSFPPEL   98 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~l   98 (157)
                      ++|++++ +.....+|..+
T Consensus       177 ~~L~L~~-N~l~~~~~~~~  194 (313)
T 1ogq_A          177 TSMTISR-NRLTGKIPPTF  194 (313)
T ss_dssp             CEEECCS-SEEEEECCGGG
T ss_pred             cEEECcC-CeeeccCChHH
Confidence            8888887 43322445433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.69  E-value=3.3e-08  Score=74.65  Aligned_cols=122  Identities=12%  Similarity=0.140  Sum_probs=60.8

Q ss_pred             CcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCCC---CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            5 KLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDGL---PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~---~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +|++|+++++ .+..++ ..+..+++|++|++++ .+..++...+   .++|+.|++++| .++ .++.    ...+++|
T Consensus       121 ~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~-~~~~----~~~l~~L  193 (317)
T 3o53_A          121 GKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIY-DVKG----QVVFAKL  193 (317)
T ss_dssp             SCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCC-EEEC----CCCCTTC
T ss_pred             CCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCc-cccc----ccccccC
Confidence            3444444443 233332 2344555666666665 4444432221   245666666554 343 3432    2346666


Q ss_pred             CEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713           80 RHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI  147 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~  147 (157)
                      ++|++++  +.+..+|..+..+      ++|+.|++++|. +...     ...+..+.++..+.+.+.
T Consensus       194 ~~L~Ls~--N~l~~l~~~~~~l------~~L~~L~L~~N~-l~~l-----~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          194 KTLDLSS--NKLAFMGPEFQSA------AGVTWISLRNNK-LVLI-----EKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CEEECCS--SCCCEECGGGGGG------TTCSEEECTTSC-CCEE-----CTTCCCCTTCCEEECTTC
T ss_pred             CEEECCC--CcCCcchhhhccc------CcccEEECcCCc-ccch-----hhHhhcCCCCCEEEccCC
Confidence            6666666  3455554444433      577888887764 2211     122444556666666553

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.69  E-value=7.1e-08  Score=79.31  Aligned_cols=122  Identities=18%  Similarity=0.266  Sum_probs=58.7

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|+.|++++| .+..+| .+..+++|+.|++++ .+..++.-...++|+.|++++| .+. .++    .+..+++|+.|
T Consensus        87 ~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N-~l~-~l~----~l~~l~~L~~L  158 (605)
T 1m9s_A           87 KNLGWLFLDEN-KIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN-KIT-DIT----VLSRLTKLDTL  158 (605)
T ss_dssp             TTCCEEECCSS-CCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSS-CCC-CCG----GGGSCTTCSEE
T ss_pred             CCCCEEECcCC-CCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCC-ccC-Cch----hhcccCCCCEE
Confidence            45555555554 344443 455555566666655 5544443333345666666553 333 332    24455556666


Q ss_pred             EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECceee
Q 040713           83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANIWD  149 (157)
Q Consensus        83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~~~  149 (157)
                      ++++ | .+..++. +..+      ++|+.|++++|. +..      ...+..+.++..+.+.+...
T Consensus       159 ~Ls~-N-~l~~~~~-l~~l------~~L~~L~Ls~N~-i~~------l~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          159 SLED-N-QISDIVP-LAGL------TKLQNLYLSKNH-ISD------LRALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             ECCS-S-CCCCCGG-GTTC------TTCCEEECCSSC-CCB------CGGGTTCTTCSEEECCSEEE
T ss_pred             ECcC-C-cCCCchh-hccC------CCCCEEECcCCC-CCC------ChHHccCCCCCEEEccCCcC
Confidence            6655 2 2333322 2222      456666665553 110      11234455666666665433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.69  E-value=7e-08  Score=78.10  Aligned_cols=55  Identities=20%  Similarity=0.196  Sum_probs=32.3

Q ss_pred             CCcceEeeecCcCCcccC---cccCCCCcccEEEeeC-cccC-CCCCCC--CCCccEEEecCC
Q 040713            4 AKLTRLEIYDCKRLEALP---KGLHNLTSLQELKIGG-ELPS-LEEDGL--PTNLHSLWIDGN   59 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp---~~~~~l~~L~~L~l~~-~l~~-lp~~~~--~~~L~~L~i~~c   59 (157)
                      ++|++|+++++ .++.++   ..+..+++|+.|++++ .+.. +|...+  .++|+.|++++|
T Consensus       377 ~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n  438 (562)
T 3a79_B          377 KRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN  438 (562)
T ss_dssp             SSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSS
T ss_pred             CCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCC
Confidence            57777888775 455433   4566777777777777 6655 554321  234555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.67  E-value=7.8e-08  Score=66.78  Aligned_cols=78  Identities=23%  Similarity=0.354  Sum_probs=65.9

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..+ |..+..+++|++|++++ .+..+|...+  .++|+.|+++++ .++ .+|..  .+..+++|
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~-~l~~~--~~~~l~~L  107 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLK-SIPRG--AFDNLKSL  107 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccc-eeCHH--HhccccCC
Confidence            68999999995 67776 56778999999999999 9999988643  479999999884 776 77764  58889999


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       108 ~~L~L~~  114 (174)
T 2r9u_A          108 THIYLYN  114 (174)
T ss_dssp             SEEECCS
T ss_pred             CEEEeCC
Confidence            9999998

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.66  E-value=2.4e-07  Score=65.31  Aligned_cols=120  Identities=22%  Similarity=0.342  Sum_probs=83.6

Q ss_pred             ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEE
Q 040713            7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTI   84 (157)
Q Consensus         7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i   84 (157)
                      +.+++++ ..++.+|..+  .++|+.|++++ .+..+|.. ...++|+.|+++++ .+. .++..  .+.++++|++|++
T Consensus        13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~-~i~~~--~f~~l~~L~~L~L   85 (193)
T 2wfh_A           13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RIS-TLSNQ--SFSNMTQLLTLIL   85 (193)
T ss_dssp             TEEECTT-SCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCC-CCCTT--TTTTCTTCCEEEC
T ss_pred             CEEEcCC-CCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCC-EeCHh--HccCCCCCCEEEC
Confidence            4566766 4688888765  46899999999 88888742 22369999999885 666 66654  6889999999999


Q ss_pred             ecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECc
Q 040713           85 SGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIAN  146 (157)
Q Consensus        85 ~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~  146 (157)
                      ++  +.+..+|. .+..+      ++|+.|+++++. +.    ......+..+.++..+.+.+
T Consensus        86 s~--N~l~~i~~~~f~~l------~~L~~L~L~~N~-l~----~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A           86 SY--NRLRCIPPRTFDGL------KSLRLLSLHGND-IS----VVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             CS--SCCCBCCTTTTTTC------TTCCEEECCSSC-CC----BCCTTTTTTCTTCCEEECCS
T ss_pred             CC--CccCEeCHHHhCCC------CCCCEEECCCCC-CC----eeChhhhhcCccccEEEeCC
Confidence            98  55655543 23333      799999998865 21    11222345566677777665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.65  E-value=7.2e-08  Score=73.06  Aligned_cols=107  Identities=15%  Similarity=0.243  Sum_probs=57.5

Q ss_pred             CcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            5 KLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      +|++|+++++ .+..++ ..+..+++|++|++++ .+..++...  ..++|+.|++++| .+. .+|.   .+..+++|+
T Consensus       194 ~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~-~lp~---~l~~l~~L~  267 (332)
T 2ft3_A          194 TLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLS-RVPA---GLPDLKLLQ  267 (332)
T ss_dssp             SCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCC-BCCT---TGGGCTTCC
T ss_pred             CCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCe-ecCh---hhhcCccCC
Confidence            5666666654 333333 4556666677777766 666555432  2356777777664 454 5665   356667777


Q ss_pred             EEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713           81 HLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +|++++  +.+..+|.. +..........+|+.+++.+++
T Consensus       268 ~L~l~~--N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          268 VVYLHT--NNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             EEECCS--SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             EEECCC--CCCCccChhHccccccccccccccceEeecCc
Confidence            777776  334444321 1111000112456777777766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.65  E-value=5.4e-08  Score=79.39  Aligned_cols=101  Identities=20%  Similarity=0.265  Sum_probs=77.2

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhh--hhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSM--IERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~l--p~~~~~l~~l~~L~   80 (157)
                      ++|+.|+++++ .+..+|..++.+++|+.|++++ .+..+|.-+..++|+.|+++++ .+. .+  |.   .+..+++|+
T Consensus       463 ~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N-~l~-~~~~p~---~l~~l~~L~  536 (567)
T 1dce_A          463 LLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN-RLQ-QSAAIQ---PLVSCPRLV  536 (567)
T ss_dssp             TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS-CCC-SSSTTG---GGGGCTTCC
T ss_pred             ccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC-CCC-CCCCcH---HHhcCCCCC
Confidence            58999999995 7889999999999999999999 8888885455679999999885 666 55  66   588999999


Q ss_pred             EEEEecCCCCCcccCcccccCCCCCCCCCccEEe
Q 040713           81 HLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLW  114 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~  114 (157)
                      .|++++  +.+..+|..+..+  ....++|+.|+
T Consensus       537 ~L~L~~--N~l~~~~~~~~~l--~~~lp~L~~L~  566 (567)
T 1dce_A          537 LLNLQG--NSLCQEEGIQERL--AEMLPSVSSIL  566 (567)
T ss_dssp             EEECTT--SGGGGSSSCTTHH--HHHCTTCSEEE
T ss_pred             EEEecC--CcCCCCccHHHHH--HHHCcccCccC
Confidence            999998  5455554422211  01125777764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.65  E-value=4.7e-08  Score=79.86  Aligned_cols=125  Identities=14%  Similarity=0.263  Sum_probs=88.8

Q ss_pred             CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++++.|++.++ .+..+|.. +..+++|++|++++ .+..++...  ..++|+.|++++| .+. .++..  .++++++|
T Consensus        51 ~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L  125 (597)
T 3oja_B           51 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIR-YLPPH--VFQNVPLL  125 (597)
T ss_dssp             CCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCC-CCCHH--HHcCCCCC
Confidence            57888999885 67778765 46899999999999 888887643  3479999999986 566 56553  57899999


Q ss_pred             CEEEEecCCCCCcccCccc-ccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECc
Q 040713           80 RHLTISGCDDDMVSFPPEL-KYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIAN  146 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~l-~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~  146 (157)
                      ++|++++  +.+..+|..+ ..+      ++|+.|++++|.- .    ......+..+.++..+.+.+
T Consensus       126 ~~L~L~~--n~l~~l~~~~~~~l------~~L~~L~Ls~N~l-~----~~~~~~~~~l~~L~~L~L~~  180 (597)
T 3oja_B          126 TVLVLER--NDLSSLPRGIFHNT------PKLTTLSMSNNNL-E----RIEDDTFQATTSLQNLQLSS  180 (597)
T ss_dssp             CEEECCS--SCCCCCCTTTTTTC------TTCCEEECCSSCC-C----BCCTTTTTTCTTCCEEECTT
T ss_pred             CEEEeeC--CCCCCCCHHHhccC------CCCCEEEeeCCcC-C----CCChhhhhcCCcCcEEECcC
Confidence            9999998  4455555432 333      7999999998752 1    11122344455566665554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.65  E-value=1.2e-07  Score=69.95  Aligned_cols=98  Identities=17%  Similarity=0.248  Sum_probs=76.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|+.|++++| .+..++ ++..+++|+.|++++ .+..++.-...++|+.|+++++ .++ .++.    +.. ++|++|
T Consensus        41 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N-~l~-~l~~----~~~-~~L~~L  111 (263)
T 1xeu_A           41 SGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN-RLK-NLNG----IPS-ACLSRL  111 (263)
T ss_dssp             TTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS-CCS-CCTT----CCC-SSCCEE
T ss_pred             CcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC-ccC-CcCc----ccc-CcccEE
Confidence            58999999996 677887 688999999999999 8888876444579999999885 666 6664    333 899999


Q ss_pred             EEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           83 TISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        83 ~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++++  +.+..++ .+..+      ++|+.|+++++.
T Consensus       112 ~L~~--N~l~~~~-~l~~l------~~L~~L~Ls~N~  139 (263)
T 1xeu_A          112 FLDN--NELRDTD-SLIHL------KNLEILSIRNNK  139 (263)
T ss_dssp             ECCS--SCCSBSG-GGTTC------TTCCEEECTTSC
T ss_pred             EccC--CccCCCh-hhcCc------ccccEEECCCCc
Confidence            9998  4565554 34444      789999998864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.64  E-value=1e-07  Score=81.30  Aligned_cols=86  Identities=24%  Similarity=0.297  Sum_probs=61.9

Q ss_pred             CCcceEeeecCcCCcccCc--ccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCc-c
Q 040713            4 AKLTRLEIYDCKRLEALPK--GLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSS-L   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~--~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~-L   79 (157)
                      ++|+.|++++| .+..+|.  .+.++++|+.|++++ .+..+|.-+..++|+.|++++| .+. .+|.   .+..+++ |
T Consensus       548 ~~L~~L~Ls~N-~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N-~l~-~lp~---~l~~l~~~L  621 (876)
T 4ecn_A          548 PKIQIFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYN-QIE-EIPE---DFCAFTDQV  621 (876)
T ss_dssp             TTCCEEECCSS-CCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSS-CCS-CCCT---TSCEECTTC
T ss_pred             CCccEEEeeCC-cCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCC-ccc-cchH---HHhhccccC
Confidence            57888888875 5667887  778888888888888 7777774344568888888775 455 6776   4777777 8


Q ss_pred             CEEEEecCCCCCcccCcc
Q 040713           80 RHLTISGCDDDMVSFPPE   97 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~   97 (157)
                      ++|++++ | .+..+|..
T Consensus       622 ~~L~Ls~-N-~L~~lp~~  637 (876)
T 4ecn_A          622 EGLGFSH-N-KLKYIPNI  637 (876)
T ss_dssp             CEEECCS-S-CCCSCCSC
T ss_pred             CEEECcC-C-CCCcCchh
Confidence            8888887 3 35566643

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.63  E-value=1.2e-07  Score=71.29  Aligned_cols=82  Identities=17%  Similarity=0.172  Sum_probs=56.4

Q ss_pred             CCCcceEeeecCcCCcccCccc--CCCCcccEEEeeC-cccCCCCC--C----CCCCccEEEecCCCCchhhhhhccccC
Q 040713            3 CAKLTRLEIYDCKRLEALPKGL--HNLTSLQELKIGG-ELPSLEED--G----LPTNLHSLWIDGNKKIWKSMIERGRGF   73 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~--~~l~~L~~L~l~~-~l~~lp~~--~----~~~~L~~L~i~~c~~l~~~lp~~~~~l   73 (157)
                      .++|++|+++++.--..+|..+  ..+++|++|++++ .+..+|..  .    .+++|++|+++++ .+. .++..  .+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~-~~~~~--~~  169 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSL-NFSCE--QV  169 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCC-CCCTT--TC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCc-cchHH--Hh
Confidence            4678888898864333677765  7888888888888 77766432  1    1267888888775 454 44432  57


Q ss_pred             CCCCccCEEEEecCCC
Q 040713           74 HRFSSLRHLTISGCDD   89 (157)
Q Consensus        74 ~~l~~L~~L~i~~~c~   89 (157)
                      ..+++|++|++++ +.
T Consensus       170 ~~l~~L~~L~Ls~-N~  184 (312)
T 1wwl_A          170 RVFPALSTLDLSD-NP  184 (312)
T ss_dssp             CCCSSCCEEECCS-CT
T ss_pred             ccCCCCCEEECCC-CC
Confidence            7788888888887 44

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.63  E-value=2.1e-07  Score=78.91  Aligned_cols=78  Identities=19%  Similarity=0.226  Sum_probs=44.4

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC--cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG--ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~--~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      ++|++|+++++ .+..+ |..+.++++|++|++++  .+..+++..+  .++|++|++++| .+....|.   .+.++++
T Consensus        24 ~~l~~LdLs~N-~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~---~~~~l~~   98 (844)
T 3j0a_A           24 NTTERLLLSFN-YIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPD---AFQGLFH   98 (844)
T ss_dssp             TTCCEEEEESC-CCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTT---SSCSCSS
T ss_pred             CCcCEEECCCC-cCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHh---HccCCcc
Confidence            46777777775 34443 45666777777777766  3334433322  256677777664 34312233   4666666


Q ss_pred             cCEEEEec
Q 040713           79 LRHLTISG   86 (157)
Q Consensus        79 L~~L~i~~   86 (157)
                      |++|++++
T Consensus        99 L~~L~Ls~  106 (844)
T 3j0a_A           99 LFELRLYF  106 (844)
T ss_dssp             CCCEECTT
T ss_pred             cCEeeCcC
Confidence            66666666

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.63  E-value=1.2e-07  Score=78.12  Aligned_cols=78  Identities=21%  Similarity=0.327  Sum_probs=49.6

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +++++|+++++ .++.++. .+.++++|++|++++ .+..+++..+  .++|++|++++| .+. .+|..  .+.++++|
T Consensus        25 ~~l~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~-~l~~~--~~~~l~~L   99 (680)
T 1ziw_A           25 TNITVLNLTHN-QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELS-QLSDK--TFAFCTNL   99 (680)
T ss_dssp             TTCSEEECCSS-CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCCcEEECCCC-CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccC-ccChh--hhccCCCC
Confidence            47788888775 4555554 466777777777777 6666554322  356777777664 454 55543  46666777


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       100 ~~L~L~~  106 (680)
T 1ziw_A          100 TELHLMS  106 (680)
T ss_dssp             SEEECCS
T ss_pred             CEEECCC
Confidence            7777776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.62  E-value=1.1e-07  Score=78.38  Aligned_cols=78  Identities=27%  Similarity=0.337  Sum_probs=46.8

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|+++++ .+..+ |..+.++++|++|++++ .+..+|...+  .++|++|++++| .+. .++..  .+.++++|
T Consensus        49 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~-~~~~~--~~~~l~~L  123 (680)
T 1ziw_A           49 SQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQ-KIKNN--PFVKQKNL  123 (680)
T ss_dssp             TTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCC-CCCSC--TTTTCTTC
T ss_pred             CcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccC-ccChh--HccccCCC
Confidence            46777777765 33333 44556677777777776 6666665422  356777777664 344 44432  45666677


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       124 ~~L~Ls~  130 (680)
T 1ziw_A          124 ITLDLSH  130 (680)
T ss_dssp             CEEECCS
T ss_pred             CEEECCC
Confidence            7777766

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.61  E-value=2.8e-07  Score=73.14  Aligned_cols=73  Identities=22%  Similarity=0.337  Sum_probs=54.7

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|++++| .++.+| .++++++|++|++++ .+..+|.  .+++|++|++++| .+. .+|    .++.+++|++|
T Consensus       131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n-~l~-~l~----~~~~l~~L~~L  200 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNN-QLE-ELP----ELQNLPFLTAI  200 (454)
T ss_dssp             TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSS-CCS-SCC----CCTTCTTCCEE
T ss_pred             CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCC-cCC-cCc----cccCCCCCCEE
Confidence            47888888885 566677 588888999999988 7777764  2358888888875 565 565    26777888888


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++++
T Consensus       201 ~l~~  204 (454)
T 1jl5_A          201 YADN  204 (454)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            8877

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.61  E-value=1.9e-07  Score=73.90  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=13.9

Q ss_pred             CCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713           25 HNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG   58 (157)
Q Consensus        25 ~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~   58 (157)
                      ..+++|+.|++++ .+..++.-...++|+.|++++
T Consensus       262 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          262 SGLTKLTELKLGANQISNISPLAGLTALTNLELNE  296 (466)
T ss_dssp             TTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             hcCCCCCEEECCCCccCccccccCCCccCeEEcCC
Confidence            3444444444444 333333222223444444444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.60  E-value=1.1e-08  Score=77.29  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=17.4

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG   37 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~   37 (157)
                      ++|++|++++|.--...+..+..+++|++|++++
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~  151 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  151 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCC
Confidence            4556666655532223444445555555555554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.58  E-value=2.3e-07  Score=64.07  Aligned_cols=78  Identities=26%  Similarity=0.391  Sum_probs=66.0

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|+.|+++++ .+..+ |..+..+++|++|++++ .+..++...+  .++|+.|+++++ .++ .++..  .+..+++|
T Consensus        30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~-~~~~~--~~~~l~~L  104 (170)
T 3g39_A           30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLK-SIPRG--AFDNLKSL  104 (170)
T ss_dssp             TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-CCCTT--TTTTCTTC
T ss_pred             CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccC-EeCHH--HhcCCCCC
Confidence            68999999995 67776 55688999999999999 9999988654  479999999885 676 67764  58889999


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       105 ~~L~L~~  111 (170)
T 3g39_A          105 THIWLLN  111 (170)
T ss_dssp             CEEECCS
T ss_pred             CEEEeCC
Confidence            9999998

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.58  E-value=1.4e-07  Score=72.20  Aligned_cols=63  Identities=21%  Similarity=0.242  Sum_probs=40.0

Q ss_pred             cccEEEeeC-cccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCc
Q 040713           29 SLQELKIGG-ELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPP   96 (157)
Q Consensus        29 ~L~~L~l~~-~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~   96 (157)
                      .++.|++++ .+..++...+. .+|+.|.+.+++.++ .+|..  .+..+++|++|++++  +.++++|.
T Consensus       155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~--~f~~l~~L~~LdLs~--N~l~~lp~  219 (350)
T 4ay9_X          155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPND--VFHGASGPVILDISR--TRIHSLPS  219 (350)
T ss_dssp             SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTT--TTTTEECCSEEECTT--SCCCCCCS
T ss_pred             hhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHH--HhccCcccchhhcCC--CCcCccCh
Confidence            455666666 66666554432 467777777666676 67664  566777788888776  45555554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.58  E-value=2.8e-07  Score=78.18  Aligned_cols=106  Identities=19%  Similarity=0.233  Sum_probs=73.7

Q ss_pred             CCCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|++|++++|.....+ |..++++++|++|++++ .+..+.+..+  .++|+.|++++| .+...++.. ..+.++++
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~-~~~~~L~~  124 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKD-GYFRNLKA  124 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTT-CCCSSCSS
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccC-ccccccCC
Confidence            368999999998666666 66788999999999998 7777755433  468999999886 444234431 13778899


Q ss_pred             cCEEEEecCCCCCcccC--cccccCCCCCCCCCccEEeeeCC
Q 040713           79 LRHLTISGCDDDMVSFP--PELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp--~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      |++|++++ | .+..++  ..+..+      ++|++|++.++
T Consensus       125 L~~L~Ls~-N-~l~~~~~~~~~~~L------~~L~~L~Ls~N  158 (844)
T 3j0a_A          125 LTRLDLSK-N-QIRSLYLHPSFGKL------NSLKSIDFSSN  158 (844)
T ss_dssp             CCEEEEES-C-CCCCCCCCGGGGTC------SSCCEEEEESS
T ss_pred             CCEEECCC-C-cccccccchhHhhC------CCCCEEECCCC
Confidence            99999998 4 343332  233333      57777777665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.58  E-value=8.6e-08  Score=76.68  Aligned_cols=76  Identities=11%  Similarity=0.114  Sum_probs=35.7

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCC-CCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFH-RFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~-~l~~L   79 (157)
                      ++|+.|++++| .+..++.  ..+++|+.|++++ .+..+++..+  .++|+.|+++++ .+....|.   .+. .+++|
T Consensus        99 ~~L~~L~L~~N-~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~---~l~~~l~~L  171 (487)
T 3oja_A           99 PSIETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFA---ELAASSDTL  171 (487)
T ss_dssp             TTCCEEECCSS-CCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS-CCCEEEGG---GGGGGTTTC
T ss_pred             CCcCEEECcCC-cCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC-CCCCcChH---HHhhhCCcc
Confidence            34555555553 3333332  2356666666666 5555543322  245666666553 33312222   122 34555


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       172 ~~L~Ls~  178 (487)
T 3oja_A          172 EHLNLQY  178 (487)
T ss_dssp             CEEECTT
T ss_pred             cEEecCC
Confidence            5555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.57  E-value=6.6e-07  Score=71.06  Aligned_cols=52  Identities=27%  Similarity=0.223  Sum_probs=30.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGN   59 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c   59 (157)
                      ++|++|++++| .++.++  ++++++|++|++++ .+..++- +..++|+.|+++++
T Consensus        85 ~~L~~L~Ls~N-~l~~~~--~~~l~~L~~L~L~~N~l~~l~~-~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           85 TNLTYLACDSN-KLTNLD--VTPLTKLTYLNCDTNKLTKLDV-SQNPLLTYLNCARN  137 (457)
T ss_dssp             TTCSEEECCSS-CCSCCC--CTTCTTCCEEECCSSCCSCCCC-TTCTTCCEEECTTS
T ss_pred             CCCCEEECcCC-CCceee--cCCCCcCCEEECCCCcCCeecC-CCCCcCCEEECCCC
Confidence            46777777764 455553  56666677777766 5555542 22245666666553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.56  E-value=5.6e-07  Score=71.44  Aligned_cols=73  Identities=26%  Similarity=0.344  Sum_probs=51.8

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|+++++ .++.+| ++..+++|++|++++ .+..++- +..++|++|++++| .++ .++     ++.+++|++|
T Consensus        42 ~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~L~~L~Ls~N-~l~-~~~-----~~~l~~L~~L  111 (457)
T 3bz5_A           42 ATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNNITTLDL-SQNTNLTYLACDSN-KLT-NLD-----VTPLTKLTYL  111 (457)
T ss_dssp             TTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSCCSCCCC-TTCTTCSEEECCSS-CCS-CCC-----CTTCTTCCEE
T ss_pred             CCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCcCCeEcc-ccCCCCCEEECcCC-CCc-eee-----cCCCCcCCEE
Confidence            57888888885 566666 577888888888888 7777763 33357888888775 454 332     5667777888


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++++
T Consensus       112 ~L~~  115 (457)
T 3bz5_A          112 NCDT  115 (457)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            7777

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.56  E-value=1.8e-07  Score=71.19  Aligned_cols=99  Identities=26%  Similarity=0.221  Sum_probs=72.2

Q ss_pred             eEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            8 RLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         8 ~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      .++.++.+.+..+|. +..+++|+.|+|++  .+..++...+  .++|+.|+++++ .+. .++..  .+.++++|++|+
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~-~~~~~--~~~~l~~L~~L~   86 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLR-FVAPD--AFHFTPRLSRLN   86 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCC-EECTT--GGGSCSCCCEEE
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccc-eeCHH--HhcCCcCCCEEe
Confidence            455555336888999 99999999999983  8888876533  479999999885 676 56654  578899999999


Q ss_pred             EecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           84 ISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        84 i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +++  +.+..+|..+-..      .+|+.|++.+++
T Consensus        87 l~~--N~l~~~~~~~~~~------~~L~~l~l~~N~  114 (347)
T 2ifg_A           87 LSF--NALESLSWKTVQG------LSLQELVLSGNP  114 (347)
T ss_dssp             CCS--SCCSCCCSTTTCS------CCCCEEECCSSC
T ss_pred             CCC--CccceeCHHHccc------CCceEEEeeCCC
Confidence            998  6566555422111      238999987754

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.52  E-value=1.3e-08  Score=77.01  Aligned_cols=84  Identities=20%  Similarity=0.264  Sum_probs=48.7

Q ss_pred             CCcceEeeecCcCCc-c-cCcccCCCCcccEEEeeC-cccC-CCCC-CCCCCccEEEecCCCCchh-hhhhccccCCCCC
Q 040713            4 AKLTRLEIYDCKRLE-A-LPKGLHNLTSLQELKIGG-ELPS-LEED-GLPTNLHSLWIDGNKKIWK-SMIERGRGFHRFS   77 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~-~-lp~~~~~l~~L~~L~l~~-~l~~-lp~~-~~~~~L~~L~i~~c~~l~~-~lp~~~~~l~~l~   77 (157)
                      ++|++|++++|. +. . ++..+..+++|++|++++ .+.. .+.. +..++|+.|++++|..+.. .++.   .+.+++
T Consensus        93 ~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~---~~~~~~  168 (336)
T 2ast_B           93 FRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT---LLSSCS  168 (336)
T ss_dssp             BCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH---HHHHCT
T ss_pred             CCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH---HHhcCC
Confidence            578888888764 33 2 566667788888888877 4431 1110 1134777777777655542 1443   244556


Q ss_pred             ccCEEEEecCCCCCc
Q 040713           78 SLRHLTISGCDDDMV   92 (157)
Q Consensus        78 ~L~~L~i~~~c~~l~   92 (157)
                      +|++|++++ |..+.
T Consensus       169 ~L~~L~l~~-~~~l~  182 (336)
T 2ast_B          169 RLDELNLSW-CFDFT  182 (336)
T ss_dssp             TCCEEECCC-CTTCC
T ss_pred             CCCEEcCCC-CCCcC
Confidence            666666666 53343

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.50  E-value=3.9e-07  Score=68.54  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=54.0

Q ss_pred             CCcceEeeecCcCCcccCcccCCC-----CcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhh--hhhccccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNL-----TSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKS--MIERGRGF   73 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l-----~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~--lp~~~~~l   73 (157)
                      ++|++|+++++ .+..+|..+..+     ++|++|++++ .+..++...+  .++|+.|+++++.-.. .  ++.. ..+
T Consensus       121 ~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~-~~~  197 (312)
T 1wwl_A          121 PDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG-ERGLISA-LCP  197 (312)
T ss_dssp             CCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCH-HHHHHHH-SCT
T ss_pred             CCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCc-chHHHHH-HHh
Confidence            57888888885 566666666555     8888888888 7777775433  3688888888764332 2  2321 012


Q ss_pred             CCCCccCEEEEec
Q 040713           74 HRFSSLRHLTISG   86 (157)
Q Consensus        74 ~~l~~L~~L~i~~   86 (157)
                      ..+++|++|++++
T Consensus       198 ~~l~~L~~L~L~~  210 (312)
T 1wwl_A          198 LKFPTLQVLALRN  210 (312)
T ss_dssp             TSCTTCCEEECTT
T ss_pred             ccCCCCCEEECCC
Confidence            6778888888887

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.48  E-value=1.1e-07  Score=79.55  Aligned_cols=111  Identities=14%  Similarity=0.189  Sum_probs=80.0

Q ss_pred             cccCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccC
Q 040713           18 EALPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFP   95 (157)
Q Consensus        18 ~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp   95 (157)
                      ...+..+..+++|+.|++++ .+..+|... ..++|+.|+++++ .+. .+|.   .+..+++|++|++++  +.+..+|
T Consensus       214 ~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~-~lp~---~~~~l~~L~~L~Ls~--N~l~~lp  286 (727)
T 4b8c_D          214 VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLT-ELPA---EIKNLSNLRVLDLSH--NRLTSLP  286 (727)
T ss_dssp             --------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCS-CCCG---GGGGGTTCCEEECTT--SCCSSCC
T ss_pred             ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCc-ccCh---hhhCCCCCCEEeCcC--CcCCccC
Confidence            33456677899999999999 888888653 3479999999885 676 7887   588999999999998  5576777


Q ss_pred             cccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECce
Q 040713           96 PELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIANI  147 (157)
Q Consensus        96 ~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~~  147 (157)
                      ..+..+      ++|+.|++++|. +.     .....+..+.++..+.+.+.
T Consensus       287 ~~~~~l------~~L~~L~L~~N~-l~-----~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          287 AELGSC------FQLKYFYFFDNM-VT-----TLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             SSGGGG------TTCSEEECCSSC-CC-----CCCSSTTSCTTCCCEECTTS
T ss_pred             hhhcCC------CCCCEEECCCCC-CC-----ccChhhhcCCCccEEeCCCC
Confidence            777666      799999998874 32     12223666777888877664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.47  E-value=4.4e-07  Score=71.85  Aligned_cols=75  Identities=23%  Similarity=0.270  Sum_probs=41.0

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|++++| .+..++. +..+++|+.|++++ .+..++.-+..++|+.|++++| .+. .++.    +..+++|++|
T Consensus       265 ~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n-~l~-~~~~----~~~l~~L~~L  336 (466)
T 1o6v_A          265 TKLTELKLGAN-QISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-NIS-DISP----VSSLTKLQRL  336 (466)
T ss_dssp             TTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-CCS-CCGG----GGGCTTCCEE
T ss_pred             CCCCEEECCCC-ccCcccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCC-cCC-Cchh----hccCccCCEe
Confidence            56777777775 4555544 55666777777766 5555544333346666666554 333 2221    2344555555


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++++
T Consensus       337 ~l~~  340 (466)
T 1o6v_A          337 FFYN  340 (466)
T ss_dssp             ECCS
T ss_pred             ECCC
Confidence            5554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.45  E-value=1.1e-06  Score=72.55  Aligned_cols=49  Identities=39%  Similarity=0.482  Sum_probs=26.5

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG   58 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~   58 (157)
                      ++|+.|++++| .++.+|.   .+++|++|++++ .+..+|.  .+++|+.|++++
T Consensus        61 ~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~  110 (622)
T 3g06_A           61 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFS  110 (622)
T ss_dssp             TTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECS
T ss_pred             CCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcC
Confidence            45666666664 4555554   345566666665 5555554  223555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.45  E-value=1.2e-06  Score=69.58  Aligned_cols=79  Identities=24%  Similarity=0.354  Sum_probs=52.9

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      +|++|+++++ .+..+| .++.+++|+.|++++ .+..+|.  .+++|+.|++++| .+. .+|.    +..+++|++|+
T Consensus       174 ~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~n-~l~-~lp~----~~~l~~L~~L~  243 (454)
T 1jl5_A          174 SLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLPD--LPLSLESIVAGNN-ILE-ELPE----LQNLPFLTTIY  243 (454)
T ss_dssp             TCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSS-CCS-SCCC----CTTCTTCCEEE
T ss_pred             cccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCCC--CcCcccEEECcCC-cCC-cccc----cCCCCCCCEEE
Confidence            5666666664 455565 467778888888877 6666654  3357888888775 555 6663    56778888888


Q ss_pred             EecCCCCCcccC
Q 040713           84 ISGCDDDMVSFP   95 (157)
Q Consensus        84 i~~~c~~l~~lp   95 (157)
                      +++  +.+..+|
T Consensus       244 l~~--N~l~~l~  253 (454)
T 1jl5_A          244 ADN--NLLKTLP  253 (454)
T ss_dssp             CCS--SCCSSCC
T ss_pred             CCC--CcCCccc
Confidence            877  3444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.44  E-value=4.8e-09  Score=74.12  Aligned_cols=101  Identities=24%  Similarity=0.414  Sum_probs=69.2

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      ++|++|+++++ .+..+| .+..+++|+.|++++ .+..+|... ..++|+.|++++| .+. .+|.    +..+++|++
T Consensus        48 ~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~-~l~~----~~~l~~L~~  119 (198)
T 1ds9_A           48 KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIA-SLSG----IEKLVNLRV  119 (198)
T ss_dssp             TTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECC-CHHH----HHHHHHSSE
T ss_pred             CCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCC-cCCc----cccCCCCCE
Confidence            57888888775 566677 677788888888888 777776432 2257888888775 555 5553    556778888


Q ss_pred             EEEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCChh
Q 040713           82 LTISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCPL  120 (157)
Q Consensus        82 L~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~~  120 (157)
                      |++++  +.+..+|.  .+..+      ++|+.|++.+|+-
T Consensus       120 L~l~~--N~i~~~~~~~~l~~l------~~L~~L~l~~N~l  152 (198)
T 1ds9_A          120 LYMSN--NKITNWGEIDKLAAL------DKLEDLLLAGNPL  152 (198)
T ss_dssp             EEESE--EECCCHHHHHHHTTT------TTCSEEEECSCHH
T ss_pred             EECCC--CcCCchhHHHHHhcC------CCCCEEEecCCcc
Confidence            88887  44554432  33333      7899999998863

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.43  E-value=1.2e-06  Score=72.19  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=18.2

Q ss_pred             CccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           77 SSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        77 ~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|+.|++++  +.+..+|..+..+      ++|+.|++++++
T Consensus       261 ~~L~~L~Ls~--N~L~~lp~~l~~l------~~L~~L~L~~N~  295 (622)
T 3g06_A          261 SGLLSLSVYR--NQLTRLPESLIHL------SSETTVNLEGNP  295 (622)
T ss_dssp             TTCCEEECCS--SCCCSCCGGGGGS------CTTCEEECCSCC
T ss_pred             ccCcEEeCCC--CCCCcCCHHHhhc------cccCEEEecCCC
Confidence            4455555554  2333444433333      567777777664

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.40  E-value=9.7e-07  Score=72.12  Aligned_cols=12  Identities=8%  Similarity=0.100  Sum_probs=8.4

Q ss_pred             CCccEEeeeCCh
Q 040713          108 SSLLQLWIWGCP  119 (157)
Q Consensus       108 ~~L~~L~i~~c~  119 (157)
                      ++|+.|++++++
T Consensus       230 ~~L~~L~L~~N~  241 (571)
T 3cvr_A          230 DPTCTIILEDNP  241 (571)
T ss_dssp             CTTEEEECCSSS
T ss_pred             CCCCEEEeeCCc
Confidence            577777777764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.36  E-value=2.2e-06  Score=70.05  Aligned_cols=10  Identities=10%  Similarity=0.155  Sum_probs=4.3

Q ss_pred             CccCEEEEec
Q 040713           77 SSLRHLTISG   86 (157)
Q Consensus        77 ~~L~~L~i~~   86 (157)
                      ++|++|++++
T Consensus       140 ~~L~~L~Ls~  149 (571)
T 3cvr_A          140 ALLEYINADN  149 (571)
T ss_dssp             TTCCEEECCS
T ss_pred             ccccEEeCCC
Confidence            3444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.33  E-value=3.2e-07  Score=68.89  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=15.8

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG   37 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~   37 (157)
                      ++|++|++++|. +..+ +..+..+++|++|++++
T Consensus       145 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~  178 (310)
T 4glp_A          145 PGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSD  178 (310)
T ss_dssp             SCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCS
T ss_pred             cCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCC
Confidence            355555555542 2222 23444555555555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.28  E-value=1.4e-06  Score=66.17  Aligned_cols=79  Identities=27%  Similarity=0.331  Sum_probs=63.8

Q ss_pred             CCCcceEeeecCcCCcccC-cccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEALP-KGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      .++|+.|++++++.+..+| ..+..+++|+.|+|++ .|..+++..  ..++|+.|++++ +.+. .+|..  .+..++ 
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~-~~~~~--~~~~~~-  104 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALE-SLSWK--TVQGLS-  104 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCS-CCCST--TTCSCC-
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-Cccc-eeCHH--HcccCC-
Confidence            3579999999756888887 4688999999999999 999888764  347999999988 5777 77764  455554 


Q ss_pred             cCEEEEec
Q 040713           79 LRHLTISG   86 (157)
Q Consensus        79 L~~L~i~~   86 (157)
                      |+.|++.+
T Consensus       105 L~~l~l~~  112 (347)
T 2ifg_A          105 LQELVLSG  112 (347)
T ss_dssp             CCEEECCS
T ss_pred             ceEEEeeC
Confidence            99999987

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.28  E-value=2.4e-06  Score=64.08  Aligned_cols=79  Identities=19%  Similarity=0.166  Sum_probs=50.1

Q ss_pred             CCcceEeeecCcCCcccCccc--CCCCcccEEEeeC-cccCCCC----C--CCCCCccEEEecCCCCchhhhhhccccCC
Q 040713            4 AKLTRLEIYDCKRLEALPKGL--HNLTSLQELKIGG-ELPSLEE----D--GLPTNLHSLWIDGNKKIWKSMIERGRGFH   74 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~--~~l~~L~~L~l~~-~l~~lp~----~--~~~~~L~~L~i~~c~~l~~~lp~~~~~l~   74 (157)
                      ++|++|++++|.-....|..+  ..+++|++|++++ .+.....    .  ...++|++|++++| .+. .++..  .+.
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~-~~~~~--~~~  166 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQA-HSP-AFSCE--QVR  166 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECC-SSC-CCCTT--SCC
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCC-Ccc-hhhHH--Hhc
Confidence            458888888864444556555  6788888888887 5554211    0  12457788888775 344 34332  466


Q ss_pred             CCCccCEEEEec
Q 040713           75 RFSSLRHLTISG   86 (157)
Q Consensus        75 ~l~~L~~L~i~~   86 (157)
                      .+++|++|++++
T Consensus       167 ~l~~L~~L~Ls~  178 (310)
T 4glp_A          167 AFPALTSLDLSD  178 (310)
T ss_dssp             CCTTCCEEECCS
T ss_pred             cCCCCCEEECCC
Confidence            777788888777

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=3.9e-07  Score=63.64  Aligned_cols=94  Identities=13%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             cCcccCCCCcccEEEeeC-cccC--CCCCCCCCCccEEEecCCCCchhhhhhccccCCCC----CccCEEEEecCCCCCc
Q 040713           20 LPKGLHNLTSLQELKIGG-ELPS--LEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRF----SSLRHLTISGCDDDMV   92 (157)
Q Consensus        20 lp~~~~~l~~L~~L~l~~-~l~~--lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l----~~L~~L~i~~~c~~l~   92 (157)
                      +|.....--.|+.|++++ .+..  +..-...++|+.|++++|..++..--.   .+..+    ++|++|++++ |++++
T Consensus        53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~---~L~~~~~~~~~L~~L~Ls~-C~~IT  128 (176)
T 3e4g_A           53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE---RLSQLENLQKSMLEMEIIS-CGNVT  128 (176)
T ss_dssp             SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHH---HHHTCHHHHHHCCEEEEES-CTTCC
T ss_pred             CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHH---HHHhcccccCCCCEEEcCC-CCcCC
Confidence            444332233688888888 4321  111112358999999999877622111   23343    3799999999 98776


Q ss_pred             ccCcccccCCCCCCCCCccEEeeeCChhHH
Q 040713           93 SFPPELKYFPEKGLPSSLLQLWIWGCPLIA  122 (157)
Q Consensus        93 ~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~  122 (157)
                      .-  .+..+..   .++|++|++++|+.++
T Consensus       129 D~--Gl~~L~~---~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          129 DK--GIIALHH---FRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HH--HHHHGGG---CTTCCEEEEESCTTCC
T ss_pred             HH--HHHHHhc---CCCCCEEECCCCCCCC
Confidence            42  3444421   2799999999998765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.99  E-value=7.8e-08  Score=67.83  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=63.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhh-ccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIE-RGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~-~~~~l~~l~~L~~   81 (157)
                      ++|+.|++++| .+..+|..+..+++|++|++++ .+..+|.-+..++|+.|+++++ .+. .++. .  .+..+++|++
T Consensus        70 ~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N-~i~-~~~~~~--~l~~l~~L~~  144 (198)
T 1ds9_A           70 ENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN-KIT-NWGEID--KLAALDKLED  144 (198)
T ss_dssp             TTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEE-ECC-CHHHHH--HHTTTTTCSE
T ss_pred             CCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECCCC-cCC-chhHHH--HHhcCCCCCE
Confidence            68999999996 6778888777889999999999 8887764233368999999885 454 4443 2  4778999999


Q ss_pred             EEEecCCC
Q 040713           82 LTISGCDD   89 (157)
Q Consensus        82 L~i~~~c~   89 (157)
                      |++++ ++
T Consensus       145 L~l~~-N~  151 (198)
T 1ds9_A          145 LLLAG-NP  151 (198)
T ss_dssp             EEECS-CH
T ss_pred             EEecC-Cc
Confidence            99998 54

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.94  E-value=8.5e-06  Score=56.83  Aligned_cols=82  Identities=15%  Similarity=0.248  Sum_probs=48.1

Q ss_pred             CcceEeeecCcCCccc-CcccCCCCcccEEEeeC--ccc-----CCCCC-CCCCCccEEEecCCCCchhh-hhhccccCC
Q 040713            5 KLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG--ELP-----SLEED-GLPTNLHSLWIDGNKKIWKS-MIERGRGFH   74 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~--~l~-----~lp~~-~~~~~L~~L~i~~c~~l~~~-lp~~~~~l~   74 (157)
                      +|+.|++++|. ++.. -..+..+++|++|++++  .+.     .+... ...++|+.|+|++|.+++.. +.    .+.
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~----~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII----ALH  136 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH----HGG
T ss_pred             eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH----HHh
Confidence            57778888775 3321 12245677788888876  232     12111 01136788888888777521 22    255


Q ss_pred             CCCccCEEEEecCCCCCc
Q 040713           75 RFSSLRHLTISGCDDDMV   92 (157)
Q Consensus        75 ~l~~L~~L~i~~~c~~l~   92 (157)
                      .+++|++|++++ |+.++
T Consensus       137 ~~~~L~~L~L~~-c~~It  153 (176)
T 3e4g_A          137 HFRNLKYLFLSD-LPGVK  153 (176)
T ss_dssp             GCTTCCEEEEES-CTTCC
T ss_pred             cCCCCCEEECCC-CCCCC
Confidence            677788888888 77654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.94  E-value=3.9e-06  Score=64.73  Aligned_cols=78  Identities=17%  Similarity=0.196  Sum_probs=42.6

Q ss_pred             CCcceEeeecCcCCc--ccC---cccCCCCcccEEEeeC-ccc------CCC-CCCCCCCccEEEecCCCCch----hhh
Q 040713            4 AKLTRLEIYDCKRLE--ALP---KGLHNLTSLQELKIGG-ELP------SLE-EDGLPTNLHSLWIDGNKKIW----KSM   66 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~--~lp---~~~~~l~~L~~L~l~~-~l~------~lp-~~~~~~~L~~L~i~~c~~l~----~~l   66 (157)
                      ++|++|++++|. +.  .++   ..+..+++|++|++++ .+.      .++ .-...++|+.|++++|. +.    ..+
T Consensus       159 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l  236 (386)
T 2ca6_A          159 PPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL  236 (386)
T ss_dssp             CCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred             CCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHH
Confidence            567777777753 32  233   3445666777777776 444      111 11123467777776653 31    144


Q ss_pred             hhccccCCCCCccCEEEEec
Q 040713           67 IERGRGFHRFSSLRHLTISG   86 (157)
Q Consensus        67 p~~~~~l~~l~~L~~L~i~~   86 (157)
                      +.   .+..+++|++|++++
T Consensus       237 ~~---~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          237 AI---ALKSWPNLRELGLND  253 (386)
T ss_dssp             HH---HGGGCTTCCEEECTT
T ss_pred             HH---HHccCCCcCEEECCC
Confidence            54   355666666676666

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.91  E-value=3.9e-06  Score=64.67  Aligned_cols=55  Identities=18%  Similarity=0.205  Sum_probs=26.3

Q ss_pred             CCcceEeeecCcCCc------ccCcccCCCCcccEEEeeC-cc-----cCCCCC-CCCCCccEEEecCC
Q 040713            4 AKLTRLEIYDCKRLE------ALPKGLHNLTSLQELKIGG-EL-----PSLEED-GLPTNLHSLWIDGN   59 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~------~lp~~~~~l~~L~~L~l~~-~l-----~~lp~~-~~~~~L~~L~i~~c   59 (157)
                      ++|++|++++| .+.      ..+..+..+++|+.|++++ .+     ..++.. ...++|+.|++++|
T Consensus       187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n  254 (386)
T 2ca6_A          187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC  254 (386)
T ss_dssp             TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred             CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence            35666666654 333      1222455566666666665 43     222221 11235666666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=7e-05  Score=56.51  Aligned_cols=77  Identities=17%  Similarity=0.247  Sum_probs=44.3

Q ss_pred             CCcceEeeecCcCCcccCcc-cCCCCcccEEEeeCcccCCCCCCCC--CCcc-EEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPKG-LHNLTSLQELKIGGELPSLEEDGLP--TNLH-SLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~-~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|+.|++.++ .++.+|.. +.++++|+.|++.+++..++...|.  ++|+ .+.+.+  .++ .++..  .+.++++|
T Consensus       226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~--~l~-~I~~~--aF~~c~~L  299 (329)
T 3sb4_A          226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPA--SVT-AIEFG--AFMGCDNL  299 (329)
T ss_dssp             TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECT--TCC-EECTT--TTTTCTTE
T ss_pred             CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcc--cce-EEchh--hhhCCccC
Confidence            46666666653 45555543 4566666666666655555555443  4566 666654  444 45444  55666666


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      +.+++.+
T Consensus       300 ~~l~l~~  306 (329)
T 3sb4_A          300 RYVLATG  306 (329)
T ss_dssp             EEEEECS
T ss_pred             CEEEeCC
Confidence            6666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.75  E-value=7.1e-06  Score=62.86  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=18.0

Q ss_pred             CCcceEeeecCcCCcccCc-----ccCCC-CcccEEEeeC-ccc
Q 040713            4 AKLTRLEIYDCKRLEALPK-----GLHNL-TSLQELKIGG-ELP   40 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-----~~~~l-~~L~~L~l~~-~l~   40 (157)
                      ++|++|++++| .+...+.     .+..+ ++|++|++++ .+.
T Consensus       109 ~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A          109 FTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLG  151 (362)
T ss_dssp             TTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred             CCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence            46666776665 3433321     12232 4666666665 443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.68  E-value=7.8e-06  Score=66.02  Aligned_cols=16  Identities=13%  Similarity=0.227  Sum_probs=8.0

Q ss_pred             CCccCEEEEecCCCCCc
Q 040713           76 FSSLRHLTISGCDDDMV   92 (157)
Q Consensus        76 l~~L~~L~i~~~c~~l~   92 (157)
                      +++|++|++++ |..+.
T Consensus       210 ~~~L~~L~L~~-~~~~~  225 (594)
T 2p1m_B          210 CPNLKSLKLNR-AVPLE  225 (594)
T ss_dssp             CTTCCEEECCT-TSCHH
T ss_pred             CCCCcEEecCC-CCcHH
Confidence            45555555555 44333

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.60  E-value=3.2e-05  Score=62.43  Aligned_cols=102  Identities=17%  Similarity=0.198  Sum_probs=58.4

Q ss_pred             CCcceEeeec---CcCCcccC------cccCCCCcccEEEeeC---ccc-----CCCCCCCCCCccEEEecCCCCchh-h
Q 040713            4 AKLTRLEIYD---CKRLEALP------KGLHNLTSLQELKIGG---ELP-----SLEEDGLPTNLHSLWIDGNKKIWK-S   65 (157)
Q Consensus         4 ~~L~~L~l~~---c~~l~~lp------~~~~~l~~L~~L~l~~---~l~-----~lp~~~~~~~L~~L~i~~c~~l~~-~   65 (157)
                      ++|++|++.+   |+.++..|      ..+..+++|++|+++.   .+.     .+.  ...++|+.|++++|. +.. .
T Consensus       403 ~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~--~~~~~L~~L~L~~n~-l~~~~  479 (592)
T 3ogk_B          403 KNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG--QYSPNVRWMLLGYVG-ESDEG  479 (592)
T ss_dssp             CSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHH--HSCTTCCEEEECSCC-SSHHH
T ss_pred             CCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHH--HhCccceEeeccCCC-CCHHH
Confidence            4666777663   34444332      1234567777777743   111     111  123578888887764 431 3


Q ss_pred             hhhccccCCCCCccCEEEEecCCCCCcc--cCcccccCCCCCCCCCccEEeeeCCh
Q 040713           66 MIERGRGFHRFSSLRHLTISGCDDDMVS--FPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        66 lp~~~~~l~~l~~L~~L~i~~~c~~l~~--lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++.   .+.++++|++|++++ |+ +..  ++..+..+      ++|+.|++++|.
T Consensus       480 ~~~---~~~~~~~L~~L~l~~-n~-l~~~~~~~~~~~l------~~L~~L~ls~n~  524 (592)
T 3ogk_B          480 LME---FSRGCPNLQKLEMRG-CC-FSERAIAAAVTKL------PSLRYLWVQGYR  524 (592)
T ss_dssp             HHH---HHTCCTTCCEEEEES-CC-CBHHHHHHHHHHC------SSCCEEEEESCB
T ss_pred             HHH---HHhcCcccCeeeccC-CC-CcHHHHHHHHHhc------CccCeeECcCCc
Confidence            443   256678888888888 76 321  22222333      689999998887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.48  E-value=1.6e-05  Score=64.14  Aligned_cols=107  Identities=19%  Similarity=0.211  Sum_probs=60.3

Q ss_pred             CCcceEeee-----cCcCCcccCc------ccCCCCcccEEEeeCcccC--CCCCC-CCCCccEEEecCCCCchhhhhhc
Q 040713            4 AKLTRLEIY-----DCKRLEALPK------GLHNLTSLQELKIGGELPS--LEEDG-LPTNLHSLWIDGNKKIWKSMIER   69 (157)
Q Consensus         4 ~~L~~L~l~-----~c~~l~~lp~------~~~~l~~L~~L~l~~~l~~--lp~~~-~~~~L~~L~i~~c~~l~~~lp~~   69 (157)
                      ++|++|++.     +|..++..|.      .+..+++|+.|++++.+..  ++..+ ..++|+.|++++|.-....+.. 
T Consensus       397 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~-  475 (594)
T 2p1m_B          397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH-  475 (594)
T ss_dssp             TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH-
T ss_pred             CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeeccCCCCcHHHHHH-
Confidence            567777777     4555553331      1345677777777651111  00001 1457888888887532211221 


Q ss_pred             cccCCCCCccCEEEEecCCCCCcccC-cccccCCCCCCCCCccEEeeeCChh
Q 040713           70 GRGFHRFSSLRHLTISGCDDDMVSFP-PELKYFPEKGLPSSLLQLWIWGCPL  120 (157)
Q Consensus        70 ~~~l~~l~~L~~L~i~~~c~~l~~lp-~~l~~lp~~~l~~~L~~L~i~~c~~  120 (157)
                        ...++++|++|++++ |+...... ..+..+      ++|+.|++++|+.
T Consensus       476 --l~~~~~~L~~L~L~~-n~~~~~~~~~~~~~l------~~L~~L~l~~~~~  518 (594)
T 2p1m_B          476 --VLSGCDSLRKLEIRD-CPFGDKALLANASKL------ETMRSLWMSSCSV  518 (594)
T ss_dssp             --HHHHCTTCCEEEEES-CSCCHHHHHHTGGGG------GGSSEEEEESSCC
T ss_pred             --HHhcCCCcCEEECcC-CCCcHHHHHHHHHhC------CCCCEEeeeCCCC
Confidence              124578899999998 76421111 112223      6899999999974

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.46  E-value=4.6e-05  Score=58.28  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=14.0

Q ss_pred             CcceEeeecCcCCcccC-----cccCCCC-cccEEEeeC
Q 040713            5 KLTRLEIYDCKRLEALP-----KGLHNLT-SLQELKIGG   37 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp-----~~~~~l~-~L~~L~l~~   37 (157)
                      +|++|++++| .+...+     ..+..++ +|++|++++
T Consensus        23 ~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~   60 (362)
T 3goz_A           23 GVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSG   60 (362)
T ss_dssp             TCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCS
T ss_pred             CceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcC
Confidence            3555555553 233332     2333444 455555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.38  E-value=0.00075  Score=50.80  Aligned_cols=34  Identities=21%  Similarity=0.167  Sum_probs=19.5

Q ss_pred             CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEec
Q 040713           49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISG   86 (157)
Q Consensus        49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~   86 (157)
                      ++|+.+++.++ .++ .++..  .+.++++|+++.+.+
T Consensus       226 ~~L~~l~L~~n-~i~-~I~~~--aF~~~~~L~~l~l~~  259 (329)
T 3sb4_A          226 PNLVSLDISKT-NAT-TIPDF--TFAQKKYLLKIKLPH  259 (329)
T ss_dssp             TTCCEEECTTB-CCC-EECTT--TTTTCTTCCEEECCT
T ss_pred             CCCeEEECCCC-Ccc-eecHh--hhhCCCCCCEEECCc
Confidence            45666666542 344 55554  556666666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.29  E-value=0.00017  Score=58.22  Aligned_cols=78  Identities=19%  Similarity=0.187  Sum_probs=38.1

Q ss_pred             CCCcceEeeecCcCCcc----cCcccCCCCcccEEEeeC-cccCCCCCC------CCCCccEEEecCCCCchhhhhhccc
Q 040713            3 CAKLTRLEIYDCKRLEA----LPKGLHNLTSLQELKIGG-ELPSLEEDG------LPTNLHSLWIDGNKKIWKSMIERGR   71 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~----lp~~~~~l~~L~~L~l~~-~l~~lp~~~------~~~~L~~L~i~~c~~l~~~lp~~~~   71 (157)
                      +++|++|++++|.....    ++.....+++|++|++++ .+..+....      ..++|+.|++++| .+. .++.   
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~-~l~~---  237 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EIL-ELVG---  237 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGG-GGHH---
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHH-HHHH---
Confidence            35777888877631111    222233566777777766 443222111      1246666666664 232 3333   


Q ss_pred             cCCCCCccCEEEEe
Q 040713           72 GFHRFSSLRHLTIS   85 (157)
Q Consensus        72 ~l~~l~~L~~L~i~   85 (157)
                      .+..+++|++|.++
T Consensus       238 ~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          238 FFKAAANLEEFCGG  251 (592)
T ss_dssp             HHHHCTTCCEEEEC
T ss_pred             HHhhhhHHHhhccc
Confidence            23444455555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.28  E-value=2.4e-05  Score=61.32  Aligned_cols=78  Identities=19%  Similarity=0.332  Sum_probs=46.8

Q ss_pred             CCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-cccCCCC----CCCC---CCccEEEecCCCCch----hhh
Q 040713            4 AKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELPSLEE----DGLP---TNLHSLWIDGNKKIW----KSM   66 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~~lp~----~~~~---~~L~~L~i~~c~~l~----~~l   66 (157)
                      ++|++|++++|. +.     .++..+..+++|++|++++ .+.....    .++.   ++|++|++++|. +.    ..+
T Consensus        28 ~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l  105 (461)
T 1z7x_W           28 QQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVL  105 (461)
T ss_dssp             TTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred             CCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHH
Confidence            467777777764 43     3455566677788888877 4432110    0111   268888887763 33    134


Q ss_pred             hhccccCCCCCccCEEEEec
Q 040713           67 IERGRGFHRFSSLRHLTISG   86 (157)
Q Consensus        67 p~~~~~l~~l~~L~~L~i~~   86 (157)
                      +.   .+..+++|++|++++
T Consensus       106 ~~---~l~~~~~L~~L~Ls~  122 (461)
T 1z7x_W          106 SS---TLRTLPTLQELHLSD  122 (461)
T ss_dssp             HH---HTTSCTTCCEEECCS
T ss_pred             HH---HHccCCceeEEECCC
Confidence            44   467777888888877

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.26  E-value=1.4e-05  Score=62.71  Aligned_cols=33  Identities=36%  Similarity=0.619  Sum_probs=18.5

Q ss_pred             CCcceEeeecCcCCcc-----cCcccCCCCcccEEEeeC
Q 040713            4 AKLTRLEIYDCKRLEA-----LPKGLHNLTSLQELKIGG   37 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~   37 (157)
                      ++|++|++++| .+..     ++..+..+++|++|++++
T Consensus       256 ~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~  293 (461)
T 1z7x_W          256 SRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAG  293 (461)
T ss_dssp             CCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             CCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCC
Confidence            45666666665 3333     444445566666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.15  E-value=0.00033  Score=54.01  Aligned_cols=32  Identities=25%  Similarity=0.272  Sum_probs=19.6

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG   37 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~   37 (157)
                      .|+|+.|.+.++..+ .++. + .+++|+.|.+..
T Consensus       171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~  202 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIIS  202 (362)
T ss_dssp             CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEEC
T ss_pred             CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEec
Confidence            468888888876433 2333 2 256666666664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.98  E-value=0.0042  Score=48.39  Aligned_cols=73  Identities=12%  Similarity=0.209  Sum_probs=36.8

Q ss_pred             CcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      +|+.+.+.+  .++.++. .+.++++|+.+++.+ .+..++...|. ++|+.+.+.+  .++ .++..  .+.++++|+.
T Consensus       158 ~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~-~I~~~--aF~~~~~L~~  230 (401)
T 4fdw_A          158 TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLK-EIGSQ--AFLKTSQLKT  230 (401)
T ss_dssp             CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCC-EECTT--TTTTCTTCCC
T ss_pred             CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chh-eehhh--HhhCCCCCCE
Confidence            455555543  4444443 345667777777765 56555554432 4555555532  233 33333  3444444444


Q ss_pred             EEE
Q 040713           82 LTI   84 (157)
Q Consensus        82 L~i   84 (157)
                      +.+
T Consensus       231 l~l  233 (401)
T 4fdw_A          231 IEI  233 (401)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.92  E-value=0.0053  Score=47.29  Aligned_cols=112  Identities=20%  Similarity=0.024  Sum_probs=58.7

Q ss_pred             CCcceEeeecCcC----C-----cccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccC
Q 040713            4 AKLTRLEIYDCKR----L-----EALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGF   73 (157)
Q Consensus         4 ~~L~~L~l~~c~~----l-----~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l   73 (157)
                      ++|+.|.|.+...    +     ..+...+..+++|+.|.+++ .-..++.. ..++|+.|++..|.--...+..-  ..
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l--~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDI--LG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHH--HH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHH--HH
Confidence            5899998865211    1     12333445789999999987 21234432 24689999998664221112110  12


Q ss_pred             CCCCccCEEEEecCCCCC-c-cc-CcccccCCCCCCCCCccEEeeeCCh
Q 040713           74 HRFSSLRHLTISGCDDDM-V-SF-PPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        74 ~~l~~L~~L~i~~~c~~l-~-~l-p~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ..+++|++|+++. +... . .. ...+..+-....+++|+.|.+.+|.
T Consensus       216 ~~lp~L~~L~L~~-~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          216 SDLPNLEKLVLYV-GVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             SBCTTCCEEEEEC-BCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             ccCCCCcEEEEec-cccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            3678888888863 2110 0 00 0011111111123678888887765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.69  E-value=0.00058  Score=50.59  Aligned_cols=66  Identities=23%  Similarity=0.302  Sum_probs=42.4

Q ss_pred             CCCCcccEEEeeC-cccCCCCC----CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccC
Q 040713           25 HNLTSLQELKIGG-ELPSLEED----GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFP   95 (157)
Q Consensus        25 ~~l~~L~~L~l~~-~l~~lp~~----~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp   95 (157)
                      .++++|+.|++++ .+..++.-    ...++|+.|++++ +.+. .+.+. ..+..+ +|++|.+.+ ++-...+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~-~~~~l-~~l~~l-~L~~L~L~~-Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELK-SEREL-DKIKGL-KLEELWLDG-NSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCC-SGGGG-GGGTTS-CCSEEECTT-STTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccC-Cchhh-hhcccC-CcceEEccC-CcCccccC
Confidence            3688899999998 77665431    1246899999987 4565 44220 023334 899999998 66444454

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.37  E-value=0.036  Score=43.04  Aligned_cols=74  Identities=11%  Similarity=0.251  Sum_probs=37.0

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeCcccCCCCCCCC-CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGGELPSLEEDGLP-TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~l~~lp~~~~~-~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      .+|+.+.+.+  +++.++. .+.++++|+.+.+.+++..++...|. .+|+.+.+.+  .++ .++..  .+.++++|+.
T Consensus       203 ~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~--~i~-~I~~~--aF~~c~~L~~  275 (401)
T 4fdw_A          203 AGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPN--GVT-NIASR--AFYYCPELAE  275 (401)
T ss_dssp             CCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEET--TCC-EECTT--TTTTCTTCCE
T ss_pred             cccCEEEeCC--chheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCC--Ccc-EEChh--HhhCCCCCCE
Confidence            3555666643  3555543 33466666666666544444443332 4556665532  233 34333  4445555555


Q ss_pred             EEE
Q 040713           82 LTI   84 (157)
Q Consensus        82 L~i   84 (157)
                      +.+
T Consensus       276 l~l  278 (401)
T 4fdw_A          276 VTT  278 (401)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.09  E-value=0.0012  Score=45.91  Aligned_cols=105  Identities=20%  Similarity=0.230  Sum_probs=62.8

Q ss_pred             CCCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-cccC-----CCCC-CCCCCccEEEecCCCCchh----hh
Q 040713            3 CAKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELPS-----LEED-GLPTNLHSLWIDGNKKIWK----SM   66 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~~-----lp~~-~~~~~L~~L~i~~c~~l~~----~l   66 (157)
                      .++|++|++++|..+.     .+...+...++|++|++++ .+..     +... ...++|+.|++++| .+..    .+
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l  113 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILAL  113 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHH
Confidence            3578899998863443     2445566778899999988 5432     1100 01257899999876 4431    12


Q ss_pred             hhccccCCCCCccCEEEE--ecCCCCCcc-----cCcccccCCCCCCCCCccEEeeeCCh
Q 040713           67 IERGRGFHRFSSLRHLTI--SGCDDDMVS-----FPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        67 p~~~~~l~~l~~L~~L~i--~~~c~~l~~-----lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ..   .+...++|++|++  ++  +.+..     +-..++.-      ++|++|++++|.
T Consensus       114 ~~---~L~~n~~L~~L~L~~~~--N~i~~~g~~~l~~~L~~n------~~L~~L~L~~n~  162 (185)
T 1io0_A          114 VE---ALQSNTSLIELRIDNQS--QPLGNNVEMEIANMLEKN------TTLLKFGYHFTQ  162 (185)
T ss_dssp             HH---GGGGCSSCCEEECCCCS--SCCCHHHHHHHHHHHHHC------SSCCEEECCCSS
T ss_pred             HH---HHHhCCCceEEEecCCC--CCCCHHHHHHHHHHHHhC------CCcCEEeccCCC
Confidence            33   3566678999999  55  33332     11122222      578899988775

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.06  E-value=0.00039  Score=53.71  Aligned_cols=34  Identities=21%  Similarity=0.394  Sum_probs=17.6

Q ss_pred             CCccEEEecCCCCchh----hhhhccccCCCCCccCEEEEec
Q 040713           49 TNLHSLWIDGNKKIWK----SMIERGRGFHRFSSLRHLTISG   86 (157)
Q Consensus        49 ~~L~~L~i~~c~~l~~----~lp~~~~~l~~l~~L~~L~i~~   86 (157)
                      ++|+.|++++| .+..    .+..   .+...++|++|++++
T Consensus       155 ~~L~~L~Ls~n-~l~~~~~~~l~~---~L~~~~~L~~L~Ls~  192 (372)
T 3un9_A          155 CQITTLRLSNN-PLTAAGVAVLME---GLAGNTSVTHLSLLH  192 (372)
T ss_dssp             CCCCEEECCSS-CCHHHHHHHHHH---HHHTCSSCCEEECTT
T ss_pred             CccceeeCCCC-CCChHHHHHHHH---HHhcCCCcCEEeCCC
Confidence            45666666665 3320    1222   234456666666666

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.00  E-value=0.0069  Score=44.75  Aligned_cols=62  Identities=26%  Similarity=0.425  Sum_probs=42.2

Q ss_pred             CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|+.|+++++ .+. .++.....+..+++|+.|++++  +.+..+. .+..+..  +  +|++|++.+++
T Consensus       170 ~~L~~L~Ls~N-~l~-~l~~l~~~~~~l~~L~~L~Ls~--N~i~~~~-~l~~l~~--l--~L~~L~L~~Np  231 (267)
T 3rw6_A          170 PELLSLNLSNN-RLY-RLDDMSSIVQKAPNLKILNLSG--NELKSER-ELDKIKG--L--KLEELWLDGNS  231 (267)
T ss_dssp             TTCCEEECTTS-CCC-CCGGGTTHHHHSTTCCEEECTT--SCCCSGG-GGGGGTT--S--CCSEEECTTST
T ss_pred             CCCCEEECCCC-CCC-CCccchhHHhhCCCCCEEECCC--CccCCch-hhhhccc--C--CcceEEccCCc
Confidence            48999999884 665 4432100345789999999998  6666552 3444421  1  89999999987

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.97  E-value=0.011  Score=38.78  Aligned_cols=50  Identities=18%  Similarity=0.314  Sum_probs=32.9

Q ss_pred             EEEeeC-ccc--CCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEec
Q 040713           32 ELKIGG-ELP--SLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISG   86 (157)
Q Consensus        32 ~L~l~~-~l~--~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~   86 (157)
                      .++.++ .++  .+|. +++++|+.|++++ +.++ .+|..  .+..+++|+.|++.+
T Consensus        12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~-N~l~-~l~~~--~f~~l~~L~~L~L~~   64 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPT-AFPVDTTELVLTG-NNLT-ALPPG--LLDALPALRTAHLGA   64 (130)
T ss_dssp             EEECCSSCCCTTTSCS-CCCTTCSEEECTT-SCCS-SCCTT--TGGGCTTCCEEECCS
T ss_pred             EEEeCCCCCccccCCC-CCCcCCCEEECCC-CcCC-ccChh--hhhhccccCEEEecC
Confidence            455555 666  6664 3666777777766 4665 66664  566677777777776

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.88  E-value=0.0014  Score=50.60  Aligned_cols=81  Identities=15%  Similarity=0.148  Sum_probs=48.1

Q ss_pred             CCcccEEEeeC-cccC-----CCCC-CCCCCccEEEecCCCCchh----hhhhccccCCCCCccCEEEEecCCCCCcc--
Q 040713           27 LTSLQELKIGG-ELPS-----LEED-GLPTNLHSLWIDGNKKIWK----SMIERGRGFHRFSSLRHLTISGCDDDMVS--   93 (157)
Q Consensus        27 l~~L~~L~l~~-~l~~-----lp~~-~~~~~L~~L~i~~c~~l~~----~lp~~~~~l~~l~~L~~L~i~~~c~~l~~--   93 (157)
                      .++|++|++++ .+..     +... ...++|++|++++|. +..    .+..   .+...++|++|++++ |. +..  
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~---~L~~~~~L~~L~Ls~-N~-i~~~g  227 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAA---QLDRNRQLQELNVAY-NG-AGDTA  227 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHH---HGGGCSCCCEEECCS-SC-CCHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHH---HHhcCCCcCeEECCC-CC-CCHHH
Confidence            46677777776 4432     1110 123579999998864 431    1233   356677899999998 53 332  


Q ss_pred             ---cCcccccCCCCCCCCCccEEeeeCCh
Q 040713           94 ---FPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        94 ---lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                         +...++..      ++|++|++++|+
T Consensus       228 ~~~l~~~L~~~------~~L~~L~Ls~N~  250 (372)
T 3un9_A          228 ALALARAAREH------PSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHHHHHHC------SSCCEEECTTSS
T ss_pred             HHHHHHHHHhC------CCCCEEeccCCC
Confidence               22222222      579999998875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.85  E-value=0.19  Score=38.54  Aligned_cols=79  Identities=20%  Similarity=0.331  Sum_probs=40.2

Q ss_pred             CCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCC
Q 040713           26 NLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPE  103 (157)
Q Consensus        26 ~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~  103 (157)
                      ++++|+.+.+.+.+..++...|.  .+|+.+.|.+  +++ .+...  .+.+.++|+.+.+..          .++.+..
T Consensus       286 ~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~-~I~~~--aF~~C~~L~~i~ip~----------sv~~I~~  350 (394)
T 4gt6_A          286 NCPALQDIEFSSRITELPESVFAGCISLKSIDIPE--GIT-QILDD--AFAGCEQLERIAIPS----------SVTKIPE  350 (394)
T ss_dssp             TCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT--TCC-EECTT--TTTTCTTCCEEEECT----------TCCBCCG
T ss_pred             cccccccccCCCcccccCceeecCCCCcCEEEeCC--ccc-EehHh--HhhCCCCCCEEEECc----------ccCEEhH
Confidence            44555555554444444444333  3555555532  233 34333  445555566655543          4455544


Q ss_pred             CCC--CCCccEEeeeCCh
Q 040713          104 KGL--PSSLLQLWIWGCP  119 (157)
Q Consensus       104 ~~l--~~~L~~L~i~~c~  119 (157)
                      .++  ..+|+.+.+.+..
T Consensus       351 ~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          351 SAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             GGGTTCTTCCEEEESSCH
T ss_pred             hHhhCCCCCCEEEECCce
Confidence            433  3678888887654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.96  E-value=0.25  Score=37.44  Aligned_cols=13  Identities=23%  Similarity=0.370  Sum_probs=6.8

Q ss_pred             CCCCcccEEEeeC
Q 040713           25 HNLTSLQELKIGG   37 (157)
Q Consensus        25 ~~l~~L~~L~l~~   37 (157)
                      ....+|+.+.+..
T Consensus       237 ~~~~~L~~i~lp~  249 (379)
T 4h09_A          237 YGMKALDEIAIPK  249 (379)
T ss_dssp             TTCSSCCEEEECT
T ss_pred             cCCccceEEEcCC
Confidence            3455555555544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.54  E-value=0.2  Score=38.42  Aligned_cols=75  Identities=21%  Similarity=0.390  Sum_probs=52.5

Q ss_pred             CcceEeeecCcCCcccCc-ccCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            5 KLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      +|+.+.+..  .++.+++ .+.++.+|+.+.|.+.++.+....|.  .+|+.+.|-.  .++ .+...  .+.+.++|+.
T Consensus       289 ~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~~i~ip~--sv~-~I~~~--aF~~C~~L~~  361 (394)
T 4gt6_A          289 ALQDIEFSS--RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLERIAIPS--SVT-KIPES--AFSNCTALNN  361 (394)
T ss_dssp             TCCEEECCT--TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEECT--TCC-BCCGG--GGTTCTTCCE
T ss_pred             ccccccCCC--cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCCEEEECc--ccC-EEhHh--HhhCCCCCCE
Confidence            344444432  3445554 44678999999998767777766664  6899999953  465 66655  6888899999


Q ss_pred             EEEec
Q 040713           82 LTISG   86 (157)
Q Consensus        82 L~i~~   86 (157)
                      +.+.+
T Consensus       362 i~~~~  366 (394)
T 4gt6_A          362 IEYSG  366 (394)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            99986

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.12  E-value=0.17  Score=32.83  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=33.4

Q ss_pred             cCCc--ccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCC
Q 040713           15 KRLE--ALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGN   59 (157)
Q Consensus        15 ~~l~--~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c   59 (157)
                      .+++  .+|..+  .++|+.|+|++ .|..++.+.|  .++|+.|+|.++
T Consensus        18 ~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           18 RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            3566  777653  34799999999 9999998764  368999999874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=91.60  E-value=0.41  Score=36.58  Aligned_cols=80  Identities=18%  Similarity=0.176  Sum_probs=54.3

Q ss_pred             ccCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCccccc
Q 040713           23 GLHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKY  100 (157)
Q Consensus        23 ~~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~  100 (157)
                      .+....+|+.+.+.+.++.++...|.  ++|+.+.|.+  .++ .+...  .+.+.++|+.+.+..          .++.
T Consensus       292 ~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~--~v~-~I~~~--aF~~c~~L~~i~lp~----------~l~~  356 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPY--LVE-EIGKR--SFRGCTSLSNINFPL----------SLRK  356 (394)
T ss_dssp             TTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCT--TCC-EECTT--TTTTCTTCCEECCCT----------TCCE
T ss_pred             cccccccccccccccccceechhhhcCCCCCCEEEeCC--ccc-EEhHH--hccCCCCCCEEEECc----------cccE
Confidence            34578899999988766666666554  5888888853  455 66554  577778888887754          3444


Q ss_pred             CCCCCC--CCCccEEeeeC
Q 040713          101 FPEKGL--PSSLLQLWIWG  117 (157)
Q Consensus       101 lp~~~l--~~~L~~L~i~~  117 (157)
                      +...++  ..+|+.+.+..
T Consensus       357 I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          357 IGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             ECTTTBTTCTTCCEEEEEG
T ss_pred             ehHHHhhCCCCCCEEEECC
Confidence            444322  36899998854

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=90.45  E-value=0.56  Score=35.48  Aligned_cols=77  Identities=19%  Similarity=0.223  Sum_probs=49.8

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeCcccCCCCCCCC--CCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGGELPSLEEDGLP--TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~l~~lp~~~~~--~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      .+|+.+.+..  .++.+.. .+.+..+|+.+.+...+..++...|.  ++|+.+.+.+ ..++ .++..  .+.+.++|+
T Consensus       240 ~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~i~l~~-~~i~-~I~~~--aF~~c~~L~  313 (379)
T 4h09_A          240 KALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYAKVKTVPYLLCSGCSNLTKVVMDN-SAIE-TLEPR--VFMDCVKLS  313 (379)
T ss_dssp             SSCCEEEECT--TCCEECTTTTTTCTTCCEEEECCCCSEECTTTTTTCTTCCEEEECC-TTCC-EECTT--TTTTCTTCC
T ss_pred             ccceEEEcCC--CccEeCccccceeehhccccccccceeccccccccccccccccccc-cccc-eehhh--hhcCCCCCC
Confidence            3455555543  3444443 34578889999887766666655443  5899988865 3455 56554  577778888


Q ss_pred             EEEEec
Q 040713           81 HLTISG   86 (157)
Q Consensus        81 ~L~i~~   86 (157)
                      .+.+..
T Consensus       314 ~i~lp~  319 (379)
T 4h09_A          314 SVTLPT  319 (379)
T ss_dssp             EEECCT
T ss_pred             EEEcCc
Confidence            887754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=89.75  E-value=0.039  Score=38.00  Aligned_cols=78  Identities=17%  Similarity=0.192  Sum_probs=50.8

Q ss_pred             CCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-cccC-----CCCC-CCCCCccEEEe--cCCCCchhh----
Q 040713            4 AKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELPS-----LEED-GLPTNLHSLWI--DGNKKIWKS----   65 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~~-----lp~~-~~~~~L~~L~i--~~c~~l~~~----   65 (157)
                      ++|++|++++|. +.     .+...+...++|++|++++ .+..     +... ...++|+.|++  +++ .+...    
T Consensus        65 ~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~  142 (185)
T 1io0_A           65 TYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEME  142 (185)
T ss_dssp             CSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHH
T ss_pred             CCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHH
Confidence            689999999974 43     2344555678899999998 5543     1111 12258999999  554 44311    


Q ss_pred             hhhccccCCCCCccCEEEEec
Q 040713           66 MIERGRGFHRFSSLRHLTISG   86 (157)
Q Consensus        66 lp~~~~~l~~l~~L~~L~i~~   86 (157)
                      +..   .+...++|++|++++
T Consensus       143 l~~---~L~~n~~L~~L~L~~  160 (185)
T 1io0_A          143 IAN---MLEKNTTLLKFGYHF  160 (185)
T ss_dssp             HHH---HHHHCSSCCEEECCC
T ss_pred             HHH---HHHhCCCcCEEeccC
Confidence            222   344568899999998

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.38  E-value=1.4  Score=33.65  Aligned_cols=76  Identities=14%  Similarity=0.139  Sum_probs=45.3

Q ss_pred             ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccc
Q 040713           23 GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELK   99 (157)
Q Consensus        23 ~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~   99 (157)
                      .+....+++.+.... .+   +...+  -.+|+.+.+.+  +++ .+...  .+.+.++|+.+.+..          .++
T Consensus       271 ~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~--~i~-~I~~~--aF~~c~~L~~i~lp~----------~v~  332 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLD--SVK-FIGEE--AFESCTSLVSIDLPY----------LVE  332 (394)
T ss_dssp             TTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECT--TCC-EECTT--TTTTCTTCCEECCCT----------TCC
T ss_pred             ccccccccceeccCceee---cccccccccccccccccc--ccc-eechh--hhcCCCCCCEEEeCC----------ccc
Confidence            345677777777665 32   22222  25888888854  465 66654  577778888887754          334


Q ss_pred             cCCCCCC--CCCccEEeee
Q 040713          100 YFPEKGL--PSSLLQLWIW  116 (157)
Q Consensus       100 ~lp~~~l--~~~L~~L~i~  116 (157)
                      .+...++  ..+|+.+.+.
T Consensus       333 ~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          333 EIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             EECTTTTTTCTTCCEECCC
T ss_pred             EEhHHhccCCCCCCEEEEC
Confidence            4433322  2567777664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	157
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.06
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.01
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.0
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.9
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.86
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.81
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.77
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.75
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.74
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.64
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.63
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.54
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.41
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.4
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.4
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.38
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.35
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.33
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.3
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.28
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.22
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.12
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.83
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.6
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.42
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.74
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	93.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	89.02
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	86.83
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	82.38

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.5e-10  Score=78.34  Aligned_cols=103  Identities=18%  Similarity=0.270  Sum_probs=80.3

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ..+++|+++++ +++.++.....+++|+.|++++ .+..++.-...++|+.|++++| .+. .++..  .+..+++|++|
T Consensus        18 ~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N-~i~-~l~~~--~~~~l~~L~~L   92 (162)
T d1a9na_          18 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RIC-RIGEG--LDQALPDLTEL   92 (162)
T ss_dssp             TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCC-EECSC--HHHHCTTCCEE
T ss_pred             CcCcEEECCCC-CCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccc-ccc-CCCcc--ccccccccccc
Confidence            47899999995 7888887667899999999999 8888765444579999999986 566 66653  34568999999


Q ss_pred             EEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCCh
Q 040713           83 TISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        83 ~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++++  +.+..++.  .++.+      ++|++|++.+|+
T Consensus        93 ~L~~--N~i~~~~~l~~l~~l------~~L~~L~l~~N~  123 (162)
T d1a9na_          93 ILTN--NSLVELGDLDPLASL------KSLTYLCILRNP  123 (162)
T ss_dssp             ECCS--CCCCCGGGGGGGGGC------TTCCEEECCSSG
T ss_pred             eecc--ccccccccccccccc------cccchhhcCCCc
Confidence            9998  55665542  33444      789999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.3e-09  Score=78.87  Aligned_cols=77  Identities=25%  Similarity=0.211  Sum_probs=61.9

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      +++++|+++++ .++.+|. .+.++++|++|++++ .+..++..+..++|+.|+++++ .++ ..+.   .+..+++|++
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N-~l~-~~~~---~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN-QLQ-SLPL---LGQTLPALTV  104 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS-CCS-SCCC---CTTTCTTCCE
T ss_pred             cCCCEEECcCC-cCCCcCHHHhhccccccccccccccccccccccccccccccccccc-ccc-cccc---cccccccccc
Confidence            58999999984 7777774 578999999999999 8888887777789999999885 565 4554   4677888888


Q ss_pred             EEEec
Q 040713           82 LTISG   86 (157)
Q Consensus        82 L~i~~   86 (157)
                      |++++
T Consensus       105 L~l~~  109 (266)
T d1p9ag_         105 LDVSF  109 (266)
T ss_dssp             EECCS
T ss_pred             ccccc
Confidence            88876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=1.3e-09  Score=75.30  Aligned_cols=103  Identities=20%  Similarity=0.308  Sum_probs=79.7

Q ss_pred             CCcceEeeecCcCCcc-cC-cccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEA-LP-KGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~-lp-~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      +++++|+++++ .+.. ++ ..+..+++|+.|++++ .+..++.+.+  .++|+.|+++++ .++ .++..  .+.++++
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N-~l~-~l~~~--~F~~l~~  103 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIK-EISNK--MFLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCC-EECSS--SSTTCTT
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc-ccc-ccCHH--HHhCCCc
Confidence            58999999995 5653 43 4557899999999999 8888877654  479999999885 777 78765  6889999


Q ss_pred             cCEEEEecCCCCCcccCcc-cccCCCCCCCCCccEEeeeCCh
Q 040713           79 LRHLTISGCDDDMVSFPPE-LKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~~-l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++|++++  +.+..+|.. +..+      ++|++|++.+.+
T Consensus       104 L~~L~L~~--N~l~~i~~~~f~~l------~~L~~l~L~~N~  137 (192)
T d1w8aa_         104 LKTLNLYD--NQISCVMPGSFEHL------NSLTSLNLASNP  137 (192)
T ss_dssp             CCEEECCS--SCCCEECTTSSTTC------TTCCEEECTTCC
T ss_pred             ccccccCC--ccccccCHHHhcCC------cccccccccccc
Confidence            99999998  656666542 2333      689999998754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=3.3e-09  Score=68.47  Aligned_cols=97  Identities=18%  Similarity=0.184  Sum_probs=75.5

Q ss_pred             ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEE
Q 040713            7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTI   84 (157)
Q Consensus         7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i   84 (157)
                      +.|+++++ +++.++ .++++++|++|++++ .+..+|.. +..++|+.|++++ +.++ .+|    ++..+++|++|++
T Consensus         1 R~L~Ls~n-~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~-N~i~-~l~----~~~~l~~L~~L~l   72 (124)
T d1dcea3           1 RVLHLAHK-DLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALE-NVD----GVANLPRLQELLL   72 (124)
T ss_dssp             SEEECTTS-CCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCC-CCG----GGTTCSSCCEEEC
T ss_pred             CEEEcCCC-CCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccc-cccc-ccC----ccccccccCeEEC
Confidence            46889884 788786 488999999999999 89999763 3347999999988 4776 676    3788999999999


Q ss_pred             ecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCCh
Q 040713           85 SGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        85 ~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++  +.+..+|.  .+..+      ++|+.|++++++
T Consensus        73 ~~--N~i~~~~~~~~l~~~------~~L~~L~l~~N~  101 (124)
T d1dcea3          73 CN--NRLQQSAAIQPLVSC------PRLVLLNLQGNS  101 (124)
T ss_dssp             CS--SCCCSSSTTGGGGGC------TTCCEEECTTSG
T ss_pred             CC--CccCCCCCchhhcCC------CCCCEEECCCCc
Confidence            98  55665542  23333      689999998866

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.86  E-value=1e-08  Score=70.95  Aligned_cols=52  Identities=15%  Similarity=0.303  Sum_probs=23.4

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecC
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDG   58 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~   58 (157)
                      ++++|++.++ .++.++ +++.+++|++|++++ .+..+++-+..++|+.|++++
T Consensus        41 ~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~   93 (199)
T d2omxa2          41 QVTTLQADRL-GIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN   93 (199)
T ss_dssp             TCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             CCCEEECCCC-CCCCcc-ccccCCCcCcCccccccccCcccccCCcccccccccc
Confidence            4455555553 333332 344455555555555 444443322223455555444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.8e-08  Score=72.61  Aligned_cols=103  Identities=20%  Similarity=0.246  Sum_probs=66.9

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC------------------------CC--CCCccEEEe
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED------------------------GL--PTNLHSLWI   56 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~------------------------~~--~~~L~~L~i   56 (157)
                      ++|++|+++++ .+...+..+..+++|+.|++++ .+..++..                        .+  .++|+.+++
T Consensus        77 ~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l  155 (266)
T d1p9ag_          77 PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL  155 (266)
T ss_dssp             TTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccccccc-cccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccc
Confidence            57888888875 5666777777777788777776 44433322                        11  246777777


Q ss_pred             cCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           57 DGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        57 ~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +++ +++ .++..  .+..+++|++|++++  +.++++|..+..+      ++|+.|++.++|
T Consensus       156 ~~N-~l~-~~~~~--~~~~l~~L~~L~Ls~--N~L~~lp~~~~~~------~~L~~L~L~~Np  206 (266)
T d1p9ag_         156 ANN-NLT-ELPAG--LLNGLENLDTLLLQE--NSLYTIPKGFFGS------HLLPFAFLHGNP  206 (266)
T ss_dssp             TTS-CCS-CCCTT--TTTTCTTCCEEECCS--SCCCCCCTTTTTT------CCCSEEECCSCC
T ss_pred             ccc-ccc-ccCcc--ccccccccceeeccc--CCCcccChhHCCC------CCCCEEEecCCC
Confidence            653 555 55543  466778888888887  4455555444333      789999998754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.4e-08  Score=67.95  Aligned_cols=101  Identities=24%  Similarity=0.172  Sum_probs=76.5

Q ss_pred             cceEeeecCcCCcccCcccCCCCcccEEEeeC--cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            6 LTRLEIYDCKRLEALPKGLHNLTSLQELKIGG--ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         6 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~--~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      .+.++..+ .++...|..+..+++|++|++.+  .++.++...|  .++|+.|+++++ +++ .++..  .+..+++|++
T Consensus        10 ~~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~-~i~~~--~f~~l~~L~~   84 (156)
T d2ifga3          10 SSGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLR-FVAPD--AFHFTPRLSR   84 (156)
T ss_dssp             SSCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCC-EECTT--GGGSCSCCCE
T ss_pred             CCeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccC-Ccccc--cccccccccc
Confidence            45566666 46777888888999999999976  5888887654  369999999885 777 77664  6888999999


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      |++++  +.++.+|..+-.      ..+|+.|++.+++
T Consensus        85 L~Ls~--N~l~~l~~~~~~------~~~l~~L~L~~Np  114 (156)
T d2ifga3          85 LNLSF--NALESLSWKTVQ------GLSLQELVLSGNP  114 (156)
T ss_dssp             EECCS--SCCSCCCSTTTC------SCCCCEEECCSSC
T ss_pred             eeccC--CCCcccChhhhc------cccccccccCCCc
Confidence            99998  656555543211      2479999998765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.76  E-value=2.1e-08  Score=73.26  Aligned_cols=109  Identities=15%  Similarity=0.213  Sum_probs=57.1

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|++|++.++......+..+..++.++.|++++ .+..++...+  .++|++|++++| +++ .+|.   .+..+++|+
T Consensus       171 ~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~-~lp~---~l~~l~~L~  245 (305)
T d1xkua_         171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV-KVPG---GLADHKYIQ  245 (305)
T ss_dssp             TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCS-SCCT---TTTTCSSCC
T ss_pred             CccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-ccc-cccc---ccccccCCC
Confidence            3555555555444434444555666666666666 5555544332  246666666664 555 5655   366666666


Q ss_pred             EEEEecCCCCCcccCccccc-CCCCCCCCCccEEeeeCCh
Q 040713           81 HLTISGCDDDMVSFPPELKY-FPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp~~l~~-lp~~~l~~~L~~L~i~~c~  119 (157)
                      +|++++  ++++.++...-. ........+|+.|++.+++
T Consensus       246 ~L~Ls~--N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         246 VVYLHN--NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             EEECCS--SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             EEECCC--CccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            676666  345544431100 0001123466666666655

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.76  E-value=2.5e-08  Score=69.58  Aligned_cols=74  Identities=18%  Similarity=0.376  Sum_probs=44.8

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      +|++|++.+| .++.++ +++.+++|++|++++ .+..++..+..++|+.|++++| .++ .++.    +..+++|+.|+
T Consensus        47 ~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n-~i~-~l~~----l~~l~~L~~L~  118 (210)
T d1h6ta2          47 SIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDEN-KVK-DLSS----LKDLKKLKSLS  118 (210)
T ss_dssp             TCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCC-CGGG----GTTCTTCCEEE
T ss_pred             CccEEECcCC-CCCCch-hHhhCCCCCEEeCCCccccCccccccCccccccccccc-ccc-cccc----ccccccccccc
Confidence            4666666664 444443 456677777777776 6666655444556777777664 454 4542    55566666666


Q ss_pred             Eec
Q 040713           84 ISG   86 (157)
Q Consensus        84 i~~   86 (157)
                      +.+
T Consensus       119 l~~  121 (210)
T d1h6ta2         119 LEH  121 (210)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=2.5e-08  Score=69.56  Aligned_cols=76  Identities=21%  Similarity=0.242  Sum_probs=55.5

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      .++|++|+++++ .++.++. +..+++|+.|++++ .+..++.....++|+.|++++|...  .++    .+..+++|+.
T Consensus        67 l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~--~~~----~l~~l~~l~~  138 (210)
T d1h6ta2          67 LPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGIS--DIN----GLVHLPQLES  138 (210)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCC--CCG----GGGGCTTCCE
T ss_pred             CCCCCEEeCCCc-cccCccc-cccCcccccccccccccccccccccccccccccccccccc--ccc----cccccccccc
Confidence            468999999996 6777764 67899999999999 8888876555579999999886432  333    2444555555


Q ss_pred             EEEec
Q 040713           82 LTISG   86 (157)
Q Consensus        82 L~i~~   86 (157)
                      +++++
T Consensus       139 l~~~~  143 (210)
T d1h6ta2         139 LYLGN  143 (210)
T ss_dssp             EECCS
T ss_pred             ccccc
Confidence            55554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=1.1e-08  Score=65.94  Aligned_cols=83  Identities=22%  Similarity=0.321  Sum_probs=66.9

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|++++ +.++.+|+.+..+++|+.|++++ .+..++.-+..++|+.|+++++ .+. .++.. ..+..+++|++|
T Consensus        20 ~~L~~L~ls~-N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N-~i~-~~~~~-~~l~~~~~L~~L   95 (124)
T d1dcea3          20 LLVTHLDLSH-NRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN-RLQ-QSAAI-QPLVSCPRLVLL   95 (124)
T ss_dssp             TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS-CCC-SSSTT-GGGGGCTTCCEE
T ss_pred             CCCCEEECCC-CccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCC-ccC-CCCCc-hhhcCCCCCCEE
Confidence            5899999998 47899998899999999999999 8888876555679999999885 565 55431 146778999999


Q ss_pred             EEecCCCCCc
Q 040713           83 TISGCDDDMV   92 (157)
Q Consensus        83 ~i~~~c~~l~   92 (157)
                      ++++  +.+.
T Consensus        96 ~l~~--N~i~  103 (124)
T d1dcea3          96 NLQG--NSLC  103 (124)
T ss_dssp             ECTT--SGGG
T ss_pred             ECCC--CcCC
Confidence            9998  4444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=6.1e-08  Score=70.23  Aligned_cols=78  Identities=33%  Similarity=0.530  Sum_probs=39.7

Q ss_pred             CCcceEeeecCcCCccc-CcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEAL-PKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|+.|+++++. +..+ +..+..+++|+.+++.+ .++.++...+  .++|+.|+++++ .++ .++..  .+.++++|
T Consensus       105 ~~L~~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N-~l~-~l~~~--~f~~l~~L  179 (284)
T d1ozna_         105 GRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RIS-SVPER--AFRGLHSL  179 (284)
T ss_dssp             TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCC-EECTT--TTTTCTTC
T ss_pred             ccCCEEecCCcc-cccccccccchhcccchhhhccccccccChhHhccccchhhcccccC-ccc-ccchh--hhcccccc
Confidence            356666665542 2222 22334555566666665 5555554432  245666666554 444 44433  34555666


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      +++.+++
T Consensus       180 ~~l~l~~  186 (284)
T d1ozna_         180 DRLLLHQ  186 (284)
T ss_dssp             CEEECCS
T ss_pred             chhhhhh
Confidence            6666655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.64  E-value=1.1e-07  Score=65.57  Aligned_cols=99  Identities=21%  Similarity=0.288  Sum_probs=72.2

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      .++|++|++++| .++.++. ++++++|++|++++ .+..++.-...++|+.|++++|...  .++    .+..+++|+.
T Consensus        61 l~nL~~L~Ls~N-~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~--~~~----~~~~l~~L~~  132 (199)
T d2omxa2          61 LNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT--DID----PLKNLTNLNR  132 (199)
T ss_dssp             CTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC--CCG----GGTTCTTCSE
T ss_pred             CCCcCcCccccc-cccCccc-ccCCcccccccccccccccccccccccccccccccccccc--ccc----ccchhhhhHH
Confidence            368999999996 6777764 88999999999999 7777765445579999999886544  333    3678899999


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      |++++ + .+..++ .+...      ++|+.|++.+|
T Consensus       133 L~l~~-n-~l~~~~-~l~~~------~~L~~L~l~~n  160 (199)
T d2omxa2         133 LELSS-N-TISDIS-ALSGL------TSLQQLNFSSN  160 (199)
T ss_dssp             EECCS-S-CCCCCG-GGTTC------TTCSEEECCSS
T ss_pred             hhhhh-h-hhcccc-ccccc------ccccccccccc
Confidence            99998 4 354443 23332      56677776654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.2e-07  Score=66.88  Aligned_cols=79  Identities=19%  Similarity=0.355  Sum_probs=60.0

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccC-CCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPS-LEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~-lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      +++++|+++++ .++.+|. .+.++++|++|++++ .+.. ++...+  .++++.+.+..++++. .++..  .+.++++
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~--~~~~l~~  104 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPE--AFQNLPN  104 (242)
T ss_dssp             SCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTT--SEECCTT
T ss_pred             CCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccc--ccccccc
Confidence            48999999985 6888886 468899999999998 5544 444333  3578888888777776 55543  5678889


Q ss_pred             cCEEEEec
Q 040713           79 LRHLTISG   86 (157)
Q Consensus        79 L~~L~i~~   86 (157)
                      |+++++.+
T Consensus       105 L~~l~l~~  112 (242)
T d1xwdc1         105 LQYLLISN  112 (242)
T ss_dssp             CCEEEEES
T ss_pred             ccccccch
Confidence            99999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.62  E-value=2.2e-08  Score=73.51  Aligned_cols=90  Identities=20%  Similarity=0.155  Sum_probs=50.3

Q ss_pred             CCcceEeeecCcCCc-ccCcccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLE-ALPKGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~-~lp~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|++++|+.+. .+|..++++++|++|++++ .+..++...  ...+|+.++++++.... .+|.   .+.++++|
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~-~~p~---~l~~l~~L  151 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPP---SISSLPNL  151 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCG---GGGGCTTC
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccc-cCch---hhccCccc
Confidence            456666666554444 4666666666666666666 555444322  12456666666543333 4554   36667777


Q ss_pred             CEEEEecCCCCCcccCccc
Q 040713           80 RHLTISGCDDDMVSFPPEL   98 (157)
Q Consensus        80 ~~L~i~~~c~~l~~lp~~l   98 (157)
                      +.+++++ +.....+|..+
T Consensus       152 ~~l~l~~-n~l~~~ip~~~  169 (313)
T d1ogqa_         152 VGITFDG-NRISGAIPDSY  169 (313)
T ss_dssp             CEEECCS-SCCEEECCGGG
T ss_pred             ceeeccc-ccccccccccc
Confidence            7777776 44333455433

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.58  E-value=8.5e-08  Score=65.79  Aligned_cols=80  Identities=20%  Similarity=0.363  Sum_probs=66.2

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      .++|+.|+++++......+..+..+++|++|++++ .+..++++.|  .++|+.|+++++ .++ .++.+  .+..+++|
T Consensus        53 l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N-~l~-~i~~~--~f~~l~~L  128 (192)
T d1w8aa_          53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN-QIS-CVMPG--SFEHLNSL  128 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSS-CCC-EECTT--SSTTCTTC
T ss_pred             CceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCc-ccc-ccCHH--HhcCCccc
Confidence            36899999998644444456778899999999999 9999988755  379999999884 787 78775  68899999


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       129 ~~l~L~~  135 (192)
T d1w8aa_         129 TSLNLAS  135 (192)
T ss_dssp             CEEECTT
T ss_pred             ccccccc
Confidence            9999998

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.2e-07  Score=66.31  Aligned_cols=79  Identities=19%  Similarity=0.273  Sum_probs=56.7

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      +++++|+++++ .++.+|. .+.++++|++|++++ .+..++...+  .+.++.+.+.....+. .++..  .+.++++|
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~-~l~~~--~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPA--TFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTT--TTTTCTTC
T ss_pred             CCCCEEECcCC-cCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccc-cccch--hhcccccC
Confidence            47899999994 7888885 578999999999998 7776665433  2466666666555665 55443  46677777


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++.+
T Consensus       108 ~~L~l~~  114 (284)
T d1ozna_         108 HTLHLDR  114 (284)
T ss_dssp             CEEECTT
T ss_pred             CEEecCC
Confidence            7777776

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=4.5e-08  Score=65.77  Aligned_cols=101  Identities=15%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC--CCCCccEEEecCCCCchhhhhh-ccccCCCCCc
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG--LPTNLHSLWIDGNKKIWKSMIE-RGRGFHRFSS   78 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~--~~~~L~~L~i~~c~~l~~~lp~-~~~~l~~l~~   78 (157)
                      .++|+.|+++++ .+..++ ++..+++|++|++++ .+..++...  ..++|+.|++++| .+. .+++ .  .+..+++
T Consensus        40 l~~L~~L~Ls~N-~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N-~i~-~~~~l~--~l~~l~~  113 (162)
T d1a9na_          40 LDQFDAIDFSDN-EIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNN-SLV-ELGDLD--PLASLKS  113 (162)
T ss_dssp             TTCCSEEECCSS-CCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSC-CCC-CGGGGG--GGGGCTT
T ss_pred             cccCCEEECCCC-CCCccC-CcccCcchhhhhcccccccCCCccccccccccccceeccc-ccc-cccccc--ccccccc
Confidence            368999999995 788885 588999999999999 998888753  2469999999986 554 4443 1  4678899


Q ss_pred             cCEEEEecCCCCCcccCc----ccccCCCCCCCCCccEEeeeC
Q 040713           79 LRHLTISGCDDDMVSFPP----ELKYFPEKGLPSSLLQLWIWG  117 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~----~l~~lp~~~l~~~L~~L~i~~  117 (157)
                      |++|++++ |+ +..+|.    .+..+      ++|+.|+-..
T Consensus       114 L~~L~l~~-N~-i~~~~~~r~~~i~~l------p~L~~LD~~~  148 (162)
T d1a9na_         114 LTYLCILR-NP-VTNKKHYRLYVIYKV------PQVRVLDFQK  148 (162)
T ss_dssp             CCEEECCS-SG-GGGSTTHHHHHHHHC------TTCSEETTEE
T ss_pred             cchhhcCC-Cc-cccccchHHHHHHHC------CCcCeeCCCC
Confidence            99999999 54 444442    12333      5787776443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=3e-07  Score=64.36  Aligned_cols=74  Identities=18%  Similarity=0.329  Sum_probs=49.6

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      +|+.|.+.+| +++.++ +++++++|++|++++ .+..+.+-...++|+.+++++| .++ .++    .+..+++|+++.
T Consensus        42 ~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n-~~~-~i~----~l~~l~~L~~l~  113 (227)
T d1h6ua2          42 GITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGN-PLK-NVS----AIAGLQSIKTLD  113 (227)
T ss_dssp             TCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSC-CCS-CCG----GGTTCTTCCEEE
T ss_pred             CcCEEECCCC-CCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccc-ccc-ccc----cccccccccccc
Confidence            6788888886 577773 677888888888888 6666554334457777777664 333 443    255666777777


Q ss_pred             Eec
Q 040713           84 ISG   86 (157)
Q Consensus        84 i~~   86 (157)
                      +++
T Consensus       114 l~~  116 (227)
T d1h6ua2         114 LTS  116 (227)
T ss_dssp             CTT
T ss_pred             ccc
Confidence            665

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.45  E-value=4.3e-07  Score=67.53  Aligned_cols=120  Identities=21%  Similarity=0.258  Sum_probs=74.4

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCC----------------------CCCCCccEEEecCCC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEED----------------------GLPTNLHSLWIDGNK   60 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~----------------------~~~~~L~~L~i~~c~   60 (157)
                      ++|+.|++.++ .+..++. +..+++|++|++++ .+..+++.                      ...++++.|+++++ 
T Consensus       241 ~~L~~L~l~~n-~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n-  317 (384)
T d2omza2         241 TNLTDLDLANN-QISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-  317 (384)
T ss_dssp             TTCSEEECCSS-CCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSS-
T ss_pred             cccchhccccC-ccCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCC-
Confidence            57888888875 4555553 66778888888877 55444321                      12246777777664 


Q ss_pred             CchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccc
Q 040713           61 KIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIP  140 (157)
Q Consensus        61 ~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~  140 (157)
                      ++. .++.    +..+++|++|++++ | .++.++ .+..+      ++|++|++++|. +..      ...+..+.+++
T Consensus       318 ~l~-~l~~----l~~l~~L~~L~L~~-n-~l~~l~-~l~~l------~~L~~L~l~~N~-l~~------l~~l~~l~~L~  376 (384)
T d2omza2         318 NIS-DISP----VSSLTKLQRLFFAN-N-KVSDVS-SLANL------TNINWLSAGHNQ-ISD------LTPLANLTRIT  376 (384)
T ss_dssp             CCS-CCGG----GGGCTTCCEEECCS-S-CCCCCG-GGGGC------TTCCEEECCSSC-CCB------CGGGTTCTTCS
T ss_pred             CCC-CCcc----cccCCCCCEEECCC-C-CCCCCh-hHcCC------CCCCEEECCCCc-CCC------ChhhccCCCCC
Confidence            454 4432    56678888888887 5 455554 34444      688888887764 321      11245566777


Q ss_pred             eeEECce
Q 040713          141 SVSIANI  147 (157)
Q Consensus       141 ~l~i~~~  147 (157)
                      .+.+.+.
T Consensus       377 ~L~L~~N  383 (384)
T d2omza2         377 QLGLNDQ  383 (384)
T ss_dssp             EEECCCE
T ss_pred             EeeCCCC
Confidence            7777653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.41  E-value=2.6e-09  Score=74.36  Aligned_cols=101  Identities=24%  Similarity=0.414  Sum_probs=72.7

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCC-CCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDG-LPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~-~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      ++|++|+++++ .++.++ ++..+++|++|++++ .+..++... ..++|+.|+++++ .++ .++.    +..+++|+.
T Consensus        48 ~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N-~i~-~l~~----~~~l~~L~~  119 (198)
T d1m9la_          48 KACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIA-SLSG----IEKLVNLRV  119 (198)
T ss_dssp             TTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE-ECC-CHHH----HHHHHHSSE
T ss_pred             cccceeECccc-CCCCcc-cccCCccccChhhcccccccccccccccccccccccccc-ccc-cccc----ccccccccc
Confidence            57888888875 577775 577888899999988 777776432 2357888988774 565 5543    566788999


Q ss_pred             EEEecCCCCCcccCc--ccccCCCCCCCCCccEEeeeCChh
Q 040713           82 LTISGCDDDMVSFPP--ELKYFPEKGLPSSLLQLWIWGCPL  120 (157)
Q Consensus        82 L~i~~~c~~l~~lp~--~l~~lp~~~l~~~L~~L~i~~c~~  120 (157)
                      |++++  +.+..++.  .+..+      ++|+.|++.+++-
T Consensus       120 L~L~~--N~i~~~~~~~~l~~l------~~L~~L~L~~N~l  152 (198)
T d1m9la_         120 LYMSN--NKITNWGEIDKLAAL------DKLEDLLLAGNPL  152 (198)
T ss_dssp             EEESE--EECCCHHHHHHHTTT------TTCSEEEECSSHH
T ss_pred             ccccc--chhccccccccccCC------CccceeecCCCcc
Confidence            99987  45555542  34444      6899999999873

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.40  E-value=3.6e-07  Score=66.49  Aligned_cols=101  Identities=24%  Similarity=0.392  Sum_probs=63.2

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccC
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLR   80 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~   80 (157)
                      ++|+.+++.++ .+..+|..+  +++|+.|++.+ .....+...+  .+.++.|.++++ .+. .++..  .+.++++|+
T Consensus       150 ~~L~~l~l~~n-~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~-~~~~~--~~~~l~~L~  222 (305)
T d1xkua_         150 KKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SIS-AVDNG--SLANTPHLR  222 (305)
T ss_dssp             TTCCEEECCSS-CCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCC-EECTT--TGGGSTTCC
T ss_pred             cccCccccccC-CccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccc-ccc-ccccc--cccccccce
Confidence            45666666664 455555433  56777777776 4443333222  246777777764 454 44433  466778888


Q ss_pred             EEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           81 HLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        81 ~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      +|++++ | .++++|..+..+      ++|+.|+++++.
T Consensus       223 ~L~L~~-N-~L~~lp~~l~~l------~~L~~L~Ls~N~  253 (305)
T d1xkua_         223 ELHLNN-N-KLVKVPGGLADH------KYIQVVYLHNNN  253 (305)
T ss_dssp             EEECCS-S-CCSSCCTTTTTC------SSCCEEECCSSC
T ss_pred             eeeccc-c-cccccccccccc------cCCCEEECCCCc
Confidence            888888 4 566666555555      689999998864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=3.2e-07  Score=61.09  Aligned_cols=78  Identities=27%  Similarity=0.277  Sum_probs=63.9

Q ss_pred             CCcceEeeecCcCCcccCc-ccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCcc
Q 040713            4 AKLTRLEIYDCKRLEALPK-GLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSL   79 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L   79 (157)
                      ++|++|++.+.+.++.++. .+.++++|+.|++++ .|..++++.|  .++|++|++++ +.++ .+|..  .+. ..+|
T Consensus        31 ~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~-N~l~-~l~~~--~~~-~~~l  105 (156)
T d2ifga3          31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALE-SLSWK--TVQ-GLSL  105 (156)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCS-CCCST--TTC-SCCC
T ss_pred             cccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC-CCCc-ccChh--hhc-cccc
Confidence            6899999988667888875 578999999999999 9999987654  36999999988 4787 78874  343 4479


Q ss_pred             CEEEEec
Q 040713           80 RHLTISG   86 (157)
Q Consensus        80 ~~L~i~~   86 (157)
                      ++|++++
T Consensus       106 ~~L~L~~  112 (156)
T d2ifga3         106 QELVLSG  112 (156)
T ss_dssp             CEEECCS
T ss_pred             cccccCC
Confidence            9999998

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.40  E-value=1.8e-07  Score=68.44  Aligned_cols=103  Identities=23%  Similarity=0.322  Sum_probs=74.0

Q ss_pred             CcceEeeecCcCC--cccCcccCCCCcccEEEeeC--ccc-CCCCC-CCCCCccEEEecCCCCchhhhhhccccCCCCCc
Q 040713            5 KLTRLEIYDCKRL--EALPKGLHNLTSLQELKIGG--ELP-SLEED-GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSS   78 (157)
Q Consensus         5 ~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~--~l~-~lp~~-~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~   78 (157)
                      +++.|+++++..-  ..+|..++++++|++|++++  .+. .+|.. +..++|++|+++++ .+. .++..  .+..+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~-~~~~~--~~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVS-GAIPD--FLSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCE-EECCG--GGGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccc-ccc-ccccc--cccchhh
Confidence            5889999986322  25889999999999999985  555 67754 34579999999986 454 33332  4677899


Q ss_pred             cCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           79 LRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        79 L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      |+.++++. +.....+|..+..+      +.++.+++.++
T Consensus       127 L~~l~l~~-N~~~~~~p~~l~~l------~~L~~l~l~~n  159 (313)
T d1ogqa_         127 LVTLDFSY-NALSGTLPPSISSL------PNLVGITFDGN  159 (313)
T ss_dssp             CCEEECCS-SEEESCCCGGGGGC------TTCCEEECCSS
T ss_pred             hccccccc-ccccccCchhhccC------cccceeecccc
Confidence            99999998 66566667666665      45666665554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3.5e-08  Score=71.91  Aligned_cols=15  Identities=27%  Similarity=0.210  Sum_probs=10.0

Q ss_pred             CCccEEeeeCChhHH
Q 040713          108 SSLLQLWIWGCPLIA  122 (157)
Q Consensus       108 ~~L~~L~i~~c~~l~  122 (157)
                      ++|++|++++|..+.
T Consensus       200 ~~L~~L~L~~C~~i~  214 (284)
T d2astb2         200 NYLQHLSLSRCYDII  214 (284)
T ss_dssp             TTCCEEECTTCTTCC
T ss_pred             CcCCEEECCCCCCCC
Confidence            567777777776554

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.35  E-value=6.5e-07  Score=66.50  Aligned_cols=79  Identities=18%  Similarity=0.300  Sum_probs=60.6

Q ss_pred             cCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCC
Q 040713           24 LHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFP  102 (157)
Q Consensus        24 ~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp  102 (157)
                      +..+++++.|++++ .+..+++-...++|+.|++++| .++ .++    .+.++++|++|++++  +.++.++. +..+ 
T Consensus       303 ~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n-~l~-~l~----~l~~l~~L~~L~l~~--N~l~~l~~-l~~l-  372 (384)
T d2omza2         303 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN-KVS-DVS----SLANLTNINWLSAGH--NQISDLTP-LANL-  372 (384)
T ss_dssp             GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCC-CCG----GGGGCTTCCEEECCS--SCCCBCGG-GTTC-
T ss_pred             cchhcccCeEECCCCCCCCCcccccCCCCCEEECCCC-CCC-CCh----hHcCCCCCCEEECCC--CcCCCChh-hccC-
Confidence            45678888999988 7777765444579999999987 676 665    377899999999997  45666652 5555 


Q ss_pred             CCCCCCCccEEeeeC
Q 040713          103 EKGLPSSLLQLWIWG  117 (157)
Q Consensus       103 ~~~l~~~L~~L~i~~  117 (157)
                           ++|+.|++++
T Consensus       373 -----~~L~~L~L~~  382 (384)
T d2omza2         373 -----TRITQLGLND  382 (384)
T ss_dssp             -----TTCSEEECCC
T ss_pred             -----CCCCEeeCCC
Confidence                 6999999976

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.33  E-value=9.4e-07  Score=61.75  Aligned_cols=120  Identities=16%  Similarity=0.220  Sum_probs=79.0

Q ss_pred             CCCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCE
Q 040713            3 CAKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRH   81 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~   81 (157)
                      +++|+.+.+.+|.. ..+ ..+...+.++.+.+++ .+.........++|+.|++.+| .+. ..+    .++++++|++
T Consensus       106 l~~L~~l~l~~~~~-~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~~~-~~~----~l~~l~~L~~  177 (227)
T d1h6ua2         106 LQSIKTLDLTSTQI-TDV-TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA-QVS-DLT----PLANLSKLTT  177 (227)
T ss_dssp             CTTCCEEECTTSCC-CCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCC-CCG----GGTTCTTCCE
T ss_pred             cccccccccccccc-ccc-chhccccchhhhhchhhhhchhhhhcccccccccccccc-ccc-cch----hhccccccee
Confidence            46888899988643 233 2355678888888887 6655444334468999999775 343 333    3678899999


Q ss_pred             EEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCChhHHHhhccCCCCCcccccccceeEECc
Q 040713           82 LTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCPLIAEKCRKDGGQYWDLLTHIPSVSIAN  146 (157)
Q Consensus        82 L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~~l~~~~~~~~~~~~~~i~~l~~l~i~~  146 (157)
                      |++++ | .++.++ .+..+      ++|++|++++|+ +...      .....+.++..+.+.+
T Consensus       178 L~Ls~-n-~l~~l~-~l~~l------~~L~~L~Ls~N~-lt~i------~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         178 LKADD-N-KISDIS-PLASL------PNLIEVHLKNNQ-ISDV------SPLANTSNLFIVTLTN  226 (227)
T ss_dssp             EECCS-S-CCCCCG-GGGGC------TTCCEEECTTSC-CCBC------GGGTTCTTCCEEEEEE
T ss_pred             cccCC-C-ccCCCh-hhcCC------CCCCEEECcCCc-CCCC------cccccCCCCCEEEeeC
Confidence            99998 4 566665 34444      689999998874 4321      1244566676666653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.30  E-value=1.5e-06  Score=63.51  Aligned_cols=91  Identities=26%  Similarity=0.330  Sum_probs=55.3

Q ss_pred             CcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            5 KLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         5 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      ++++|+++++ .++.+|+.   +++|++|++++ .++.+|.  .+.+|+.|++.++ .++ .++.    +  .+.|++|+
T Consensus        39 ~l~~LdLs~~-~L~~lp~~---~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~l~~n-~l~-~l~~----l--p~~L~~L~  104 (353)
T d1jl5a_          39 QAHELELNNL-GLSSLPEL---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNN-NLK-ALSD----L--PPLLEYLG  104 (353)
T ss_dssp             TCSEEECTTS-CCSCCCSC---CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSS-CCS-CCCS----C--CTTCCEEE
T ss_pred             CCCEEEeCCC-CCCCCCCC---CCCCCEEECCCCCCccccc--chhhhhhhhhhhc-ccc-hhhh----h--cccccccc
Confidence            5778888775 57777753   46778888887 7777764  3457777777764 444 3432    1  13577777


Q ss_pred             EecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           84 ISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        84 i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      +++  +.++.+|       ..+..++|+.|++.++
T Consensus       105 L~~--n~l~~lp-------~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_         105 VSN--NQLEKLP-------ELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             CCS--SCCSSCC-------CCTTCTTCCEEECCSS
T ss_pred             ccc--ccccccc-------chhhhccceeeccccc
Confidence            776  3344444       2222256666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.2e-07  Score=67.48  Aligned_cols=61  Identities=21%  Similarity=0.274  Sum_probs=42.3

Q ss_pred             CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCC
Q 040713           49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      ++|+.|++++|..++.....   .+..+++|++|++++ |..+..-  .+..+.   -.++|+.|++++|
T Consensus       175 ~~L~~L~L~~~~~itd~~~~---~l~~~~~L~~L~L~~-C~~i~~~--~l~~L~---~~~~L~~L~l~~~  235 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQ---EFFQLNYLQHLSLSR-CYDIIPE--TLLELG---EIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGG---GGGGCTTCCEEECTT-CTTCCGG--GGGGGG---GCTTCCEEECTTS
T ss_pred             ccccccccccccCCCchhhh---hhcccCcCCEEECCC-CCCCChH--HHHHHh---cCCCCCEEeeeCC
Confidence            57888888888777633333   366788999999998 8866431  222221   1268999999887

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=4e-06  Score=58.70  Aligned_cols=99  Identities=15%  Similarity=0.242  Sum_probs=70.6

Q ss_pred             ceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCC--CCCccEEEecCCCCchhhhhhccccCCCCCccCEEE
Q 040713            7 TRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGL--PTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLT   83 (157)
Q Consensus         7 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~--~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~   83 (157)
                      +.++..+ .+++.+|..+  .+++++|++++ .+..+|...|  .++|++|+++++.... .++..  .+.+++.++++.
T Consensus        11 ~~i~c~~-~~l~~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~-~i~~~--~f~~l~~l~~l~   84 (242)
T d1xwdc1          11 RVFLCQE-SKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE-VIEAD--VFSNLPKLHEIR   84 (242)
T ss_dssp             SEEEEES-CSCSSCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC-EECSS--SEESCTTCCEEE
T ss_pred             CEEEEeC-CCCCCcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc-eeecc--cccccccccccc
Confidence            3445554 4688888765  36899999999 9998887654  3699999999876554 55554  567889999999


Q ss_pred             EecCCCCCcccCc-ccccCCCCCCCCCccEEeeeCC
Q 040713           84 ISGCDDDMVSFPP-ELKYFPEKGLPSSLLQLWIWGC  118 (157)
Q Consensus        84 i~~~c~~l~~lp~-~l~~lp~~~l~~~L~~L~i~~c  118 (157)
                      +.. |+.+..++. .+..+      ++|+.+++.++
T Consensus        85 ~~~-~n~l~~~~~~~~~~l------~~L~~l~l~~~  113 (242)
T d1xwdc1          85 IEK-ANNLLYINPEAFQNL------PNLQYLLISNT  113 (242)
T ss_dssp             EEC-CTTCCEECTTSEECC------TTCCEEEEESC
T ss_pred             ccc-ccccccccccccccc------ccccccccchh
Confidence            988 776665543 23333      56777777665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.12  E-value=1.2e-05  Score=58.57  Aligned_cols=71  Identities=25%  Similarity=0.337  Sum_probs=55.8

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhhccccCCCCCccCEE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHL   82 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L   82 (157)
                      ++|++|++++ +.++.+|..   +.+|+.|++.+ .+..++.  +++.|++|+++++ .+. .+|.    ...+++|++|
T Consensus        58 ~~L~~L~Ls~-N~l~~lp~~---~~~L~~L~l~~n~l~~l~~--lp~~L~~L~L~~n-~l~-~lp~----~~~l~~L~~L  125 (353)
T d1jl5a_          58 PHLESLVASC-NSLTELPEL---PQSLKSLLVDNNNLKALSD--LPPLLEYLGVSNN-QLE-KLPE----LQNSSFLKII  125 (353)
T ss_dssp             TTCSEEECCS-SCCSSCCCC---CTTCCEEECCSSCCSCCCS--CCTTCCEEECCSS-CCS-SCCC----CTTCTTCCEE
T ss_pred             CCCCEEECCC-CCCcccccc---hhhhhhhhhhhcccchhhh--hcccccccccccc-ccc-cccc----hhhhccceee
Confidence            5899999987 588889865   46788999998 7777753  5668999999875 566 6774    5678889999


Q ss_pred             EEec
Q 040713           83 TISG   86 (157)
Q Consensus        83 ~i~~   86 (157)
                      ++.+
T Consensus       126 ~l~~  129 (353)
T d1jl5a_         126 DVDN  129 (353)
T ss_dssp             ECCS
T ss_pred             cccc
Confidence            8877

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.83  E-value=9.4e-08  Score=66.19  Aligned_cols=80  Identities=23%  Similarity=0.230  Sum_probs=60.7

Q ss_pred             CCcceEeeecCcCCcccCcccCCCCcccEEEeeC-cccCCCCCCCCCCccEEEecCCCCchhhhhh-ccccCCCCCccCE
Q 040713            4 AKLTRLEIYDCKRLEALPKGLHNLTSLQELKIGG-ELPSLEEDGLPTNLHSLWIDGNKKIWKSMIE-RGRGFHRFSSLRH   81 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~-~l~~lp~~~~~~~L~~L~i~~c~~l~~~lp~-~~~~l~~l~~L~~   81 (157)
                      ++|++|++++| .++.+|.....+++|+.|++++ .+..++.-...++|+.|+++++ .+. .++. .  .+..+++|++
T Consensus        70 ~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N-~i~-~~~~~~--~l~~l~~L~~  144 (198)
T d1m9la_          70 ENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNN-KIT-NWGEID--KLAALDKLED  144 (198)
T ss_dssp             TTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEESEE-ECC-CHHHHH--HHTTTTTCSE
T ss_pred             ccccChhhccc-ccccccccccccccccccccccccccccccccccccccccccccc-hhc-cccccc--cccCCCccce
Confidence            58999999986 6778876555677899999999 8877754333368999999875 454 4442 1  3788999999


Q ss_pred             EEEecCCC
Q 040713           82 LTISGCDD   89 (157)
Q Consensus        82 L~i~~~c~   89 (157)
                      |++++ ++
T Consensus       145 L~L~~-N~  151 (198)
T d1m9la_         145 LLLAG-NP  151 (198)
T ss_dssp             EEECS-SH
T ss_pred             eecCC-Cc
Confidence            99998 44

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.60  E-value=0.00029  Score=46.40  Aligned_cols=58  Identities=26%  Similarity=0.282  Sum_probs=35.9

Q ss_pred             CCCCcccEEEeeC-cccCCCCC----CCCCCccEEEecCCCCchhhhhhccccCCCCCccCEEEEec
Q 040713           25 HNLTSLQELKIGG-ELPSLEED----GLPTNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISG   86 (157)
Q Consensus        25 ~~l~~L~~L~l~~-~l~~lp~~----~~~~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~   86 (157)
                      ..+++|++|++++ .+..++..    ...++|+.|+++++ .++ .+++.  ......+|+.|++.+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~-~l~~l--~~l~~~~L~~L~L~~  124 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELK-SEREL--DKIKGLKLEELWLDG  124 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTS-CCC-CGGGH--HHHTTCCCSSCCCTT
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccC-ccc-cchhh--hhhhccccceeecCC
Confidence            4577888888888 77666431    12357888888773 554 45432  111234678888877

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0019  Score=47.82  Aligned_cols=103  Identities=15%  Similarity=0.245  Sum_probs=55.6

Q ss_pred             CCcceEeeecCcCCccc--CcccCCCCcccEEEeeC-cccC-----CCCC-CCCCCccEEEecCCCCchh----hhhhcc
Q 040713            4 AKLTRLEIYDCKRLEAL--PKGLHNLTSLQELKIGG-ELPS-----LEED-GLPTNLHSLWIDGNKKIWK----SMIERG   70 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~~l--p~~~~~l~~L~~L~l~~-~l~~-----lp~~-~~~~~L~~L~i~~c~~l~~----~lp~~~   70 (157)
                      ++|++|+|++ +++...  .+.+..++++++|++.+ .+..     +... ...++|+.|+++++ .+..    .+..  
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~--   77 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ--   77 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH--
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHH--
Confidence            3678888855 455431  22334567778888887 5431     1110 12347888888775 4431    1222  


Q ss_pred             ccCCC-CCccCEEEEecCCCCCcc-----cCcccccCCCCCCCCCccEEeeeCCh
Q 040713           71 RGFHR-FSSLRHLTISGCDDDMVS-----FPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        71 ~~l~~-l~~L~~L~i~~~c~~l~~-----lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                       .+.. -++|++|++++ |. +..     ++..++..      ++|++|++.++.
T Consensus        78 -~l~~~~~~L~~L~L~~-n~-it~~~~~~l~~~l~~~------~~L~~L~L~~N~  123 (460)
T d1z7xw1          78 -GLQTPSCKIQKLSLQN-CC-LTGAGCGVLSSTLRTL------PTLQELHLSDNL  123 (460)
T ss_dssp             -TTCSTTCCCCEEECTT-SC-CBGGGHHHHHHHTTSC------TTCCEEECCSSB
T ss_pred             -HHhcCCCCCCEEECCC-CC-ccccccccccchhhcc------cccccccccccc
Confidence             2322 24688888887 53 332     12222333      578888887764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.0042  Score=45.90  Aligned_cols=78  Identities=17%  Similarity=0.264  Sum_probs=55.2

Q ss_pred             CCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-cccC-----CCCCC--CCCCccEEEecCCCCchh----hh
Q 040713            4 AKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELPS-----LEEDG--LPTNLHSLWIDGNKKIWK----SM   66 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~~-----lp~~~--~~~~L~~L~i~~c~~l~~----~l   66 (157)
                      ++++.|++.+|. +.     .+...+...++|+.|++++ .+..     +...-  ...+|+.|++++|. ++.    .+
T Consensus        27 ~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l  104 (460)
T d1z7xw1          27 QQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVL  104 (460)
T ss_dssp             TTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred             CCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccccc
Confidence            589999999984 43     3445567899999999998 5531     21111  12479999999984 431    23


Q ss_pred             hhccccCCCCCccCEEEEec
Q 040713           67 IERGRGFHRFSSLRHLTISG   86 (157)
Q Consensus        67 p~~~~~l~~l~~L~~L~i~~   86 (157)
                      +.   .+...++|++|++++
T Consensus       105 ~~---~l~~~~~L~~L~L~~  121 (460)
T d1z7xw1         105 SS---TLRTLPTLQELHLSD  121 (460)
T ss_dssp             HH---HTTSCTTCCEEECCS
T ss_pred             cc---hhhcccccccccccc
Confidence            33   477889999999988

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.74  E-value=0.011  Score=38.64  Aligned_cols=83  Identities=16%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             CCCcceEeeecCcCCcc-----cCcccCCCCcccEEEeeC-cccC-----CCCC-CCCCCccEEEecCCCCchh-hhhhc
Q 040713            3 CAKLTRLEIYDCKRLEA-----LPKGLHNLTSLQELKIGG-ELPS-----LEED-GLPTNLHSLWIDGNKKIWK-SMIER   69 (157)
Q Consensus         3 ~~~L~~L~l~~c~~l~~-----lp~~~~~l~~L~~L~l~~-~l~~-----lp~~-~~~~~L~~L~i~~c~~l~~-~lp~~   69 (157)
                      .++|++|++++++.+..     +-..+...++|++|++++ .+..     +... ..-++|+.|++++| .+.. .+...
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n-~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehh-hcchHHHHHH
Confidence            36899999987654432     233456778899999988 4431     1100 01257999999887 4431 12111


Q ss_pred             cccCCCCCccCEEEEec
Q 040713           70 GRGFHRFSSLRHLTISG   86 (157)
Q Consensus        70 ~~~l~~l~~L~~L~i~~   86 (157)
                      ...+..-++|++|++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HHHTTTTCCCSEEECCC
T ss_pred             HHHHHhCCcCCEEECCC
Confidence            11466668899999986

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.43  E-value=0.0082  Score=39.03  Aligned_cols=62  Identities=23%  Similarity=0.366  Sum_probs=41.4

Q ss_pred             CCccEEEecCCCCchhhhhhccccCCCCCccCEEEEecCCCCCcccCcccccCCCCCCCCCccEEeeeCCh
Q 040713           49 TNLHSLWIDGNKKIWKSMIERGRGFHRFSSLRHLTISGCDDDMVSFPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        49 ~~L~~L~i~~c~~l~~~lp~~~~~l~~l~~L~~L~i~~~c~~l~~lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ++|+.|+++++ .++ .++.....+..+++|+.|++++  +.++++++ +..+.    ..+|+.+++.++|
T Consensus        65 ~~L~~L~Ls~N-~i~-~l~~~~~~~~~l~~L~~L~Ls~--N~i~~l~~-l~~l~----~~~L~~L~L~~Np  126 (162)
T d1koha1          65 PELLSLNLSNN-RLY-RLDDMSSIVQKAPNLKILNLSG--NELKSERE-LDKIK----GLKLEELWLDGNS  126 (162)
T ss_dssp             TTCCCCCCCSS-CCC-CCSGGGTHHHHSTTCCCCCCTT--SCCCCGGG-HHHHT----TCCCSSCCCTTST
T ss_pred             CCCCEeeCCCc-ccc-CCchhHHHHhhCCccccccccc--Cccccchh-hhhhh----ccccceeecCCCC
Confidence            58999999985 555 4432101345689999999998  66766653 22221    1368889998876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.02  E-value=0.02  Score=41.28  Aligned_cols=86  Identities=14%  Similarity=0.127  Sum_probs=44.1

Q ss_pred             cCCCCcccEEEeeC-cccC------CCC-CCCCCCccEEEecCCCCchh----hhhhccccCCCCCccCEEEEecCCCCC
Q 040713           24 LHNLTSLQELKIGG-ELPS------LEE-DGLPTNLHSLWIDGNKKIWK----SMIERGRGFHRFSSLRHLTISGCDDDM   91 (157)
Q Consensus        24 ~~~l~~L~~L~l~~-~l~~------lp~-~~~~~~L~~L~i~~c~~l~~----~lp~~~~~l~~l~~L~~L~i~~~c~~l   91 (157)
                      +...++|+.|++++ .+..      +.. ....++|+.|+++++. +..    .+..   .+...++|++|++++ |. +
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~---~l~~~~~L~~L~Ls~-n~-i  255 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAI---ALKSWPNLRELGLND-CL-L  255 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHH---HGGGCTTCCEEECTT-CC-C
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-ccccccccccc---cccccccchhhhhhc-Cc-c
Confidence            34566777777776 4321      111 0122577888887653 321    1222   355667788888877 54 2


Q ss_pred             cc-----cCcccccCCCCCCCCCccEEeeeCCh
Q 040713           92 VS-----FPPELKYFPEKGLPSSLLQLWIWGCP  119 (157)
Q Consensus        92 ~~-----lp~~l~~lp~~~l~~~L~~L~i~~c~  119 (157)
                      ..     +-..+...+    ..+|++|+++++.
T Consensus       256 ~~~g~~~l~~~l~~~~----~~~L~~L~ls~N~  284 (344)
T d2ca6a1         256 SARGAAAVVDAFSKLE----NIGLQTLRLQYNE  284 (344)
T ss_dssp             CHHHHHHHHHHHHTCS----SCCCCEEECCSSC
T ss_pred             CchhhHHHHHHhhhcc----CCCCCEEECCCCc
Confidence            21     100111111    1467888887764

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.83  E-value=0.1  Score=33.46  Aligned_cols=83  Identities=17%  Similarity=0.173  Sum_probs=45.1

Q ss_pred             CCcceEeeecCcCCc-----ccCcccCCCCcccEEEeeC-cccCCCCC------CCCCCccEEEecCCCCchhhhhhccc
Q 040713            4 AKLTRLEIYDCKRLE-----ALPKGLHNLTSLQELKIGG-ELPSLEED------GLPTNLHSLWIDGNKKIWKSMIERGR   71 (157)
Q Consensus         4 ~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~-~l~~lp~~------~~~~~L~~L~i~~c~~l~~~lp~~~~   71 (157)
                      |+|++|++.++..+.     .+-..+...++|+.|++++ .+..-...      ...++++.+++++|.--...+.....
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            578888887754442     1233455677888888887 44321000      11257888888765432211111111


Q ss_pred             cCCCCCccCEEEEec
Q 040713           72 GFHRFSSLRHLTISG   86 (157)
Q Consensus        72 ~l~~l~~L~~L~i~~   86 (157)
                      .+...++|+.+++..
T Consensus        97 ~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          97 ALQSNTSLIELRIDN  111 (166)
T ss_dssp             GGGGCSSCCEEECCC
T ss_pred             HHHhCccccEEeecc
Confidence            355567787777764

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=82.38  E-value=0.37  Score=34.16  Aligned_cols=33  Identities=6%  Similarity=0.138  Sum_probs=18.3

Q ss_pred             CCcceEeeecCcCC-----cccCcccCCCCcccEEEeeC
Q 040713            4 AKLTRLEIYDCKRL-----EALPKGLHNLTSLQELKIGG   37 (157)
Q Consensus         4 ~~L~~L~l~~c~~l-----~~lp~~~~~l~~L~~L~l~~   37 (157)
                      .+|+.|+++++ .+     ..+-..+...++|+.|++++
T Consensus        31 ~~l~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~l~l~~   68 (344)
T d2ca6a1          31 DSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSD   68 (344)
T ss_dssp             SCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCS
T ss_pred             CCCCEEECcCC-cCCHHHHHHHHHHHHhCCCCCEEECCC
Confidence            35666777664 22     22334455666677777665