Citrus Sinensis ID: 040734

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
MALKAVHVSDVPSLDQVPESPSLTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKPAKVVEKEDNKSLNGEGEDGE
cccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccHHHHHHHHHHccccEEEEEEEEEccccEEEEccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccccEEEEEccccccccHHHHccHHHHHHHHHHccccEEEEccccccccHHHHHHHHHcccEEEEEEccccHHHHHHHHHHccccEEEEccHHHHHHHHHHcccccccHHHHccccccccccccc
ccccHEEEccccEEEEEccccccccccccHHHHccccccccccccccEEEEcccccccccccccHHHHHccHHHHHHHHHHHHccccEEEEEEEEEcccccEEEEcEEEEEccccccccccHHHccHHHHHHcccHHHHHcccHHHHcccccccccccccccccccccHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHcccccEEEEEcccccccccHHHcHHHHHHHHHHHcccccEcccHHHHHHcHHHHHHHHHcccEEEEEccccccHHHHHHHHHccccEEEEccHHHHHHHHHHHHcccccccHHccccccccccccc
malkavhvsdvpsldqvpespsltrfstsfSSCLEmnksasfripkflvvghrghgmnvlQSSDKRMQAIKENSIasfnssakypldfIEFDVqvtkdgwpvifhddvivsedngtiFEKRITELSLSEflsygpqreqgkigksllrktkdgkilhwNVEIDDSLCTLQEAFQqvdpnvgfnvelkfddhivYEQDYLIRVIQAILKIVFEfaenrpiifstfQPDAAVLIRKLQstypvffltnggteifYDVRRNSLEEAVKVCLEGGLQGIVSEvkgvfrnpgavtkikESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMikpakvvekednkslngegedge
malkavhvsdvpsldqvpespslTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLseflsygpqreqgkigksllrktkdgKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGlqgivsevkgvfrnpgavtkikesklsllTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDmikpakvvekednkslngegedge
MALKAVHVSDVPSLDQVPESPSLTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKPAKVVEKEDNKSLNGEGEDGE
*********************************L****SASFRIPKFLVVGHRGHGMNV*****************SFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGP******IGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKPA*******************
*ALKAVHVSDVPSLDQVPESPSLTRFSTSFS*********SFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAV**************************
***************QVPESPSLTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKPAKVVEK**************
*ALKAVHVSDVPSLDQVPESPSLTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGK*********KDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKP********************
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MALKAVHVSDVPSLDQVPESPSLTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKPAKVVEKEDNKSLNGEGEDGE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query361 2.2.26 [Sep-21-2011]
Q029791223 Glycerophosphodiester pho yes no 0.772 0.228 0.315 6e-33
Q9C1041076 Glycerophosphodiester pho yes no 0.778 0.261 0.315 3e-32
Q74ZH91321 Glycerophosphodiester pho yes no 0.775 0.211 0.301 4e-32
Q10003796 Putative glycerophosphoch yes no 0.770 0.349 0.322 2e-25
Q80VJ4672 Glycerophosphocholine pho yes no 0.800 0.430 0.283 2e-24
Q8C0L9675 Glycerophosphocholine pho yes no 0.806 0.431 0.282 3e-24
Q9NPB8672 Glycerophosphocholine pho yes no 0.745 0.400 0.281 3e-23
Q21407690 Putative glycerophosphoch no no 0.756 0.395 0.275 2e-18
O07592243 Putative glycerophosphory yes no 0.554 0.823 0.240 2e-05
P37965293 Glycerophosphoryl diester no no 0.465 0.573 0.219 0.0003
>sp|Q02979|GDE1_YEAST Glycerophosphodiester phosphodiesterase GDE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GDE1 PE=1 SV=1 Back     alignment and function desciption
 Score =  142 bits (357), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/352 (31%), Positives = 167/352 (47%), Gaps = 73/352 (20%)

Query: 49   VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDV 108
            V+GHRG G N   + +K +Q I EN++ SF  +A     ++EFDVQ+TKD  PV++HD  
Sbjct: 874  VIGHRGLGKN---NPNKSLQ-IGENTVESFIMAASLGASYVEFDVQLTKDNVPVVYHD-F 928

Query: 109  IVSEDNGTIFEKRITELSLSEFL--------------SYGPQREQGK-------IGKSL- 146
            +V+E   T  +  + EL+L +FL               + P    G         G+S+ 
Sbjct: 929  LVAE---TGVDIPMHELTLEQFLDLNNADKEHIQRGAGHSPHHVNGADTALQKYRGRSVD 985

Query: 147  ------LRKTKD-------GKI--LHWN---------------------VEIDDSLCTLQ 170
                  LR+  D       GK    HW+                       I  S  TL+
Sbjct: 986  DSDVSTLRRAWDLHDNDPNGKSNNAHWSDNRMRLTKTFKKNNFKGNARGHSIASSFVTLK 1045

Query: 171  EAFQQVDPNVGFNVELKFDDHIVYEQDYLIRV-------IQAILKIVFEFAENRPIIFST 223
            E F+++  NVGFN+E KF      E++ L ++       +  +LK+VF+ A  R IIFS+
Sbjct: 1046 ELFKKIPANVGFNIECKFPMLDEAEEEELGQIMMEMNHWVDTVLKVVFDNANGRDIIFSS 1105

Query: 224  FQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF 283
            F PD  +++   Q   P+ FLT GG+E   D+R +SL+  ++   +  L GIVS    + 
Sbjct: 1106 FHPDICIMLSLKQPVIPILFLTEGGSEQMADLRASSLQNGIRFAKKWNLLGIVSAAAPIL 1165

Query: 284  RNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAV 335
            + P  V  +K + L  +TYG  NN  E   +Q   G+D VIVD V  I   +
Sbjct: 1166 KAPRLVQVVKSNGLVCVTYGVDNNDPENASIQIEAGVDAVIVDSVLAIRRGL 1217
Glycerophosphocholine glycerophosphodiesterase responsible for the hydrolysis of intracellular glycerophosphocholine into glycerol-phosphate and choline. The choline is used for phosphatidyl-choline synthesis. Required for utilization of glycerophosphocholine as phosphate source.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 4EC: 6
>sp|Q9C104|GDE1_SCHPO Glycerophosphodiester phosphodiesterase gde1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gde1 PE=1 SV=1 Back     alignment and function description
>sp|Q74ZH9|GDE1_ASHGO Glycerophosphodiester phosphodiesterase GDE1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=GDE1 PE=3 SV=2 Back     alignment and function description
>sp|Q10003|GPC1A_CAEEL Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog T05H10.7 OS=Caenorhabditis elegans GN=T05H10.7 PE=2 SV=1 Back     alignment and function description
>sp|Q80VJ4|GPCP1_RAT Glycerophosphocholine phosphodiesterase GPCPD1 OS=Rattus norvegicus GN=Gpcpd1 PE=2 SV=1 Back     alignment and function description
>sp|Q8C0L9|GPCP1_MOUSE Glycerophosphocholine phosphodiesterase GPCPD1 OS=Mus musculus GN=Gpcpd1 PE=1 SV=1 Back     alignment and function description
>sp|Q9NPB8|GPCP1_HUMAN Glycerophosphocholine phosphodiesterase GPCPD1 OS=Homo sapiens GN=GPCPD1 PE=1 SV=2 Back     alignment and function description
>sp|Q21407|GPC1B_CAEEL Putative glycerophosphocholine phosphodiesterase GPCPD1 homolog K10B3.6 OS=Caenorhabditis elegans GN=K10B3.6 PE=2 SV=2 Back     alignment and function description
>sp|O07592|YHDW_BACSU Putative glycerophosphoryl diester phosphodiesterase YhdW OS=Bacillus subtilis (strain 168) GN=yhdW PE=3 SV=1 Back     alignment and function description
>sp|P37965|GLPQ_BACSU Glycerophosphoryl diester phosphodiesterase OS=Bacillus subtilis (strain 168) GN=glpQ PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
224129260382 predicted protein [Populus trichocarpa] 0.988 0.934 0.759 1e-162
255543649383 glycerophosphodiester phosphodiesterase, 0.966 0.911 0.748 1e-157
224055783372 predicted protein [Populus trichocarpa] 0.933 0.905 0.764 1e-157
296082305372 unnamed protein product [Vitis vinifera] 0.947 0.919 0.752 1e-156
225451535382 PREDICTED: glycerophosphodiester phospho 0.947 0.895 0.752 1e-156
388521543380 unknown [Medicago truncatula] 0.963 0.915 0.747 1e-153
356571595381 PREDICTED: glycerophosphodiester phospho 0.944 0.895 0.758 1e-152
356571601384 PREDICTED: glycerophosphodiester phospho 0.947 0.890 0.747 1e-150
356561440381 PREDICTED: glycerophosphodiester phospho 0.944 0.895 0.743 1e-149
255638521381 unknown [Glycine max] 0.944 0.895 0.743 1e-149
>gi|224129260|ref|XP_002328930.1| predicted protein [Populus trichocarpa] gi|222839360|gb|EEE77697.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  577 bits (1488), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/358 (75%), Positives = 324/358 (90%), Gaps = 1/358 (0%)

Query: 1   MALKAVHVSDVPSLDQVPESPSLTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHGMNVL 60
           MALKAVHVSDVP+LD VP++ SL+ +ST  S  +EMN++A+F++PKF+V GHRG+GMNVL
Sbjct: 1   MALKAVHVSDVPNLDHVPDNASLSLYSTRLSKGVEMNRAATFKMPKFMVAGHRGNGMNVL 60

Query: 61  QSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEK 120
           QS+D RM+ IKENSI SFNS+AK+P+DFIEFDVQVTKD  PVIFHD+ I+SEDNGTIFEK
Sbjct: 61  QSTDGRMKEIKENSIMSFNSAAKHPIDFIEFDVQVTKDDCPVIFHDNFILSEDNGTIFEK 120

Query: 121 RITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNV 180
           R+TEL LSEFL +GPQ+E G+ GKSLLRKTK+GKIL WNVE DDSLCTLQ+AFQQV+ ++
Sbjct: 121 RVTELCLSEFLCFGPQKE-GRAGKSLLRKTKEGKILEWNVEKDDSLCTLQDAFQQVESSL 179

Query: 181 GFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYP 240
           GFN+ELKFDDHIVY+QDYLIRV+QAIL++VF+  ++RP+IFS+FQPDAA+L+RKLQST+P
Sbjct: 180 GFNIELKFDDHIVYQQDYLIRVLQAILQVVFDHGKDRPVIFSSFQPDAALLVRKLQSTFP 239

Query: 241 VFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLL 300
           V+FLTNGGTEIFYD RRNSLEEA+KVCLEGGLQGIVSEVKGVFRNPGAV KIK++KLSLL
Sbjct: 240 VYFLTNGGTEIFYDARRNSLEEAIKVCLEGGLQGIVSEVKGVFRNPGAVNKIKDAKLSLL 299

Query: 301 TYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKPAKVVEKEDNKSLNGEGE 358
           TYG+LNNV+EAVYMQHLMGIDGVIVDLVQEITEAV D+IKP+K+ E E     +GE E
Sbjct: 300 TYGKLNNVSEAVYMQHLMGIDGVIVDLVQEITEAVSDLIKPSKMGEAESLAEGDGEME 357

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543649|ref|XP_002512887.1| glycerophosphodiester phosphodiesterase, putative [Ricinus communis] gi|223547898|gb|EEF49390.1| glycerophosphodiester phosphodiesterase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224055783|ref|XP_002298651.1| predicted protein [Populus trichocarpa] gi|222845909|gb|EEE83456.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|296082305|emb|CBI21310.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225451535|ref|XP_002273468.1| PREDICTED: glycerophosphodiester phosphodiesterase GDE1 [Vitis vinifera] gi|147820259|emb|CAN71478.1| hypothetical protein VITISV_038621 [Vitis vinifera] Back     alignment and taxonomy information
>gi|388521543|gb|AFK48833.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356571595|ref|XP_003553962.1| PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356571601|ref|XP_003553965.1| PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like isoform 4 [Glycine max] Back     alignment and taxonomy information
>gi|356561440|ref|XP_003548989.1| PREDICTED: glycerophosphodiester phosphodiesterase GDE1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255638521|gb|ACU19569.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query361
TAIR|locus:2078603361 SRG3 "senescence-related gene 0.911 0.911 0.667 7.4e-121
TAIR|locus:2163031374 GDPD2 "glycerophosphodiester p 0.919 0.887 0.663 2.9e-119
TAIR|locus:2169278370 GDPD3 "glycerophosphodiester p 0.889 0.867 0.570 2.5e-97
SGD|S0000060311223 GDE1 "Glycerophosphocholine (G 0.470 0.139 0.367 1.5e-34
POMBASE|SPAPB1E7.051076 gde1 "glycerophosphoryl dieste 0.620 0.208 0.331 2.1e-34
DICTYBASE|DDB_G02900851560 DDB_G0290085 "Glycerophosphodi 0.484 0.112 0.361 2.3e-34
CGD|CAL00029401162 orf19.3936 [Candida albicans ( 0.481 0.149 0.362 2.7e-34
UNIPROTKB|Q5AK841162 CaO19.3936 "Putative uncharact 0.481 0.149 0.362 2.7e-34
ASPGD|ASPL00000605371205 AN0137 [Emericella nidulans (t 0.476 0.142 0.338 1.9e-32
UNIPROTKB|G4ML671189 MGG_06704 "Glycerophosphodiest 0.481 0.146 0.325 3e-29
TAIR|locus:2078603 SRG3 "senescence-related gene 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 229/343 (66%), Positives = 284/343 (82%)

Query:     1 MALKAVHVSDVPSLDQVPESPSLTRFSTSFSSCLEMNKSASFRIPKFLVVGHRGHGMNVL 60
             M+LKA+HVS+VPSLD  PE+PSL         C   ++ A+    KF+VVGHRGHGMN+ 
Sbjct:     1 MSLKAIHVSEVPSLDHFPENPSLI--------C--SSRKAN---NKFVVVGHRGHGMNMS 47

Query:    61 QSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEK 120
             QS D R  A+KENSI SFN+++K+PLDFIEFDVQVT+DG P+IFHDD I SE+ G ++EK
Sbjct:    48 QSPDLRFSALKENSILSFNAASKFPLDFIEFDVQVTRDGCPIIFHDDFIYSEEQGVVYEK 107

Query:   121 RITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVD-PN 179
             R+TE+ LSEF+SYGPQR+ GK GK LLRK+K+GKI  W+V  DDS CTLQEAF++V+ PN
Sbjct:   108 RVTEVCLSEFMSYGPQRDTGKTGKPLLRKSKEGKIHKWSVATDDSFCTLQEAFEKVENPN 167

Query:   180 VGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTY 239
             +GFN+ELK DD++ Y  D+L R++  IL++V +   +R IIFS+F PDAA+L+RKLQ+TY
Sbjct:   168 LGFNIELKLDDNVFYSSDHLSRLLLPILQVVSDIGNDRTIIFSSFHPDAALLVRKLQTTY 227

Query:   240 PVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSL 299
             PVFFLTNGGTE+++D RRNSLEEA+KVCLEGGLQGIVSEVKGVFRNP  V KIKESKLSL
Sbjct:   228 PVFFLTNGGTEMYHDTRRNSLEEAIKVCLEGGLQGIVSEVKGVFRNPALVNKIKESKLSL 287

Query:   300 LTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDMIKPA 342
             +TYG+LNNVAEAVYMQHLMGI+GVIVD V+EITEAV +M+KP+
Sbjct:   288 MTYGKLNNVAEAVYMQHLMGIEGVIVDHVEEITEAVREMMKPS 330
GO:0005737 "cytoplasm" evidence=ISM
GO:0006071 "glycerol metabolic process" evidence=IEA;ISS
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0008889 "glycerophosphodiester phosphodiesterase activity" evidence=IEA;ISS;IDA
GO:0009536 "plastid" evidence=IDA
GO:0030643 "cellular phosphate ion homeostasis" evidence=IMP
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2163031 GDPD2 "glycerophosphodiester phosphodiesterase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169278 GDPD3 "glycerophosphodiester phosphodiesterase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000006031 GDE1 "Glycerophosphocholine (GroPCho) phosphodiesterase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPAPB1E7.05 gde1 "glycerophosphoryl diester phosphodiesterase Gde1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290085 DDB_G0290085 "Glycerophosphodiester phosphodiesterase GDE1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
CGD|CAL0002940 orf19.3936 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AK84 CaO19.3936 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms
ASPGD|ASPL0000060537 AN0137 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4ML67 MGG_06704 "Glycerophosphodiesterase GDE1" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_scaffold_88000060
hypothetical protein (382 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
cd08605282 cd08605, GDPD_GDE5_like_1_plant, Glycerophosphodie 1e-139
cd08572293 cd08572, GDPD_GDE5_like, Glycerophosphodiester pho 1e-105
cd08606286 cd08606, GDPD_YPL110cp_fungi, Glycerophosphodieste 4e-56
cd08607290 cd08607, GDPD_GDE5, Glycerophosphodiester phosphod 4e-49
pfam03009238 pfam03009, GDPD, Glycerophosphoryl diester phospho 8e-42
COG0584257 COG0584, UgpQ, Glycerophosphoryl diester phosphodi 2e-24
cd08556189 cd08556, GDPD, Glycerophosphodiester phosphodieste 6e-18
cd08563230 cd08563, GDPD_TtGDE_like, Glycerophosphodiester ph 1e-17
cd08562229 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester p 4e-14
cd08568226 cd08568, GDPD_TmGDE_like, Glycerophosphodiester ph 1e-12
cd08566240 cd08566, GDPD_AtGDE_like, Glycerophosphodiester ph 2e-11
cd08575264 cd08575, GDPD_GDE4_like, Glycerophosphodiester pho 2e-11
cd08564265 cd08564, GDPD_GsGDE_like, Glycerophosphodiester ph 1e-09
cd08573258 cd08573, GDPD_GDE1, Glycerophosphodiester phosphod 2e-09
cd08565235 cd08565, GDPD_pAtGDE_like, Glycerophosphodiester p 3e-09
cd08561249 cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glyceropho 5e-09
cd08582233 cd08582, GDPD_like_2, Glycerophosphodiester phosph 8e-09
cd08585237 cd08585, GDPD_like_3, Glycerophosphodiester phosph 2e-08
cd08581229 cd08581, GDPD_like_1, Glycerophosphodiester phosph 3e-08
cd08579220 cd08579, GDPD_memb_like, Glycerophosphodiester pho 6e-08
cd08601256 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester p 1e-07
cd08567263 cd08567, GDPD_SpGDE_like, Glycerophosphodiester ph 1e-06
cd08570234 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodieste 4e-06
cd08559296 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic g 3e-05
cd08612300 cd08612, GDPD_GDE4, Glycerophosphodiester phosphod 3e-05
PRK09454249 PRK09454, ugpQ, cytoplasmic glycerophosphodiester 4e-05
cd08613309 cd08613, GDPD_GDE4_like_1, Glycerophosphodiester p 7e-05
cd08609315 cd08609, GDPD_GDE3, Glycerophosphodiester phosphod 1e-04
cd08578300 cd08578, GDPD_NUC-2_fungi, Putative glycerophospho 7e-04
cd08600318 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester p 0.001
cd08602309 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester 0.002
>gnl|CDD|176547 cd08605, GDPD_GDE5_like_1_plant, Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 Back     alignment and domain information 
 Score =  396 bits (1019), Expect = e-139
 Identities = 147/282 (52%), Positives = 192/282 (68%), Gaps = 1/282 (0%)

Query: 48  LVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDD 107
            V+GHRG GMN           I+EN+IASF +++K+  DF+EFDVQVT+DG PVI+HDD
Sbjct: 1   AVIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDD 60

Query: 108 VIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLL-RKTKDGKILHWNVEIDDSL 166
            IV E  G +   RI +L+L+E  + GPQ E  K     L RK KD +   W ++++DS+
Sbjct: 61  FIVVERGGEVESSRIRDLTLAELKALGPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSI 120

Query: 167 CTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFAENRPIIFSTFQP 226
            TL+E F +V P++GFN+ELKF D    E + L+R ++AIL +  + A  R I+FS+F P
Sbjct: 121 PTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVRELRAILAVCKQHAPGRRIMFSSFDP 180

Query: 227 DAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNP 286
           DAAVL+R LQS YPV FLT+ G     D RRNS+E A++V LEGGLQGIVSEVK + RNP
Sbjct: 181 DAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLLRNP 240

Query: 287 GAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLV 328
            AV+ +K S L L TYG+LNN AEAV  Q  +G+DGVIVD V
Sbjct: 241 TAVSLVKASGLELGTYGKLNNDAEAVERQADLGVDGVIVDHV 282

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs. Length = 282
>gnl|CDD|176514 cd08572, GDPD_GDE5_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins Back     alignment and domain information
>gnl|CDD|176548 cd08606, GDPD_YPL110cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins Back     alignment and domain information
>gnl|CDD|176549 cd08607, GDPD_GDE5, Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins Back     alignment and domain information
>gnl|CDD|217317 pfam03009, GDPD, Glycerophosphoryl diester phosphodiesterase family Back     alignment and domain information
>gnl|CDD|223657 COG0584, UgpQ, Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|176499 cd08556, GDPD, Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins Back     alignment and domain information
>gnl|CDD|176506 cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins Back     alignment and domain information
>gnl|CDD|176505 cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins Back     alignment and domain information
>gnl|CDD|176511 cd08568, GDPD_TmGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins Back     alignment and domain information
>gnl|CDD|176509 cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins Back     alignment and domain information
>gnl|CDD|176517 cd08575, GDPD_GDE4_like, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins Back     alignment and domain information
>gnl|CDD|176507 cd08564, GDPD_GsGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins Back     alignment and domain information
>gnl|CDD|176515 cd08573, GDPD_GDE1, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins Back     alignment and domain information
>gnl|CDD|176508 cd08565, GDPD_pAtGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins Back     alignment and domain information
>gnl|CDD|176504 cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins Back     alignment and domain information
>gnl|CDD|176524 cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases Back     alignment and domain information
>gnl|CDD|176527 cd08585, GDPD_like_3, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases Back     alignment and domain information
>gnl|CDD|176523 cd08581, GDPD_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases Back     alignment and domain information
>gnl|CDD|176521 cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases Back     alignment and domain information
>gnl|CDD|176543 cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins Back     alignment and domain information
>gnl|CDD|176510 cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins Back     alignment and domain information
>gnl|CDD|176512 cd08570, GDPD_YPL206cp_fungi, Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins Back     alignment and domain information
>gnl|CDD|176502 cd08559, GDPD_periplasmic_GlpQ_like, Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins Back     alignment and domain information
>gnl|CDD|176553 cd08612, GDPD_GDE4, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins Back     alignment and domain information
>gnl|CDD|236524 PRK09454, ugpQ, cytoplasmic glycerophosphodiester phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|176554 cd08613, GDPD_GDE4_like_1, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 Back     alignment and domain information
>gnl|CDD|176551 cd08609, GDPD_GDE3, Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins Back     alignment and domain information
>gnl|CDD|176520 cd08578, GDPD_NUC-2_fungi, Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins Back     alignment and domain information
>gnl|CDD|176542 cd08600, GDPD_EcGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins Back     alignment and domain information
>gnl|CDD|176544 cd08602, GDPD_ScGlpQ1_like, Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 361
cd08605282 GDPD_GDE5_like_1_plant Glycerophosphodiester phosp 100.0
cd08580263 GDPD_Rv2277c_like Glycerophosphodiester phosphodie 100.0
cd08601256 GDPD_SaGlpQ_like Glycerophosphodiester phosphodies 100.0
PRK09454249 ugpQ cytoplasmic glycerophosphodiester phosphodies 100.0
cd08572293 GDPD_GDE5_like Glycerophosphodiester phosphodieste 100.0
cd08606286 GDPD_YPL110cp_fungi Glycerophosphodiester phosphod 100.0
cd08612300 GDPD_GDE4 Glycerophosphodiester phosphodiesterase 100.0
cd08564265 GDPD_GsGDE_like Glycerophosphodiester phosphodiest 100.0
cd08562229 GDPD_EcUgpQ_like Glycerophosphodiester phosphodies 100.0
cd08568226 GDPD_TmGDE_like Glycerophosphodiester phosphodiest 100.0
cd08610316 GDPD_GDE6 Glycerophosphodiester phosphodiesterase 100.0
cd08607290 GDPD_GDE5 Glycerophosphodiester phosphodiesterase 100.0
cd08581229 GDPD_like_1 Glycerophosphodiester phosphodiesteras 100.0
cd08565235 GDPD_pAtGDE_like Glycerophosphodiester phosphodies 100.0
cd08574252 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodieste 100.0
cd08563230 GDPD_TtGDE_like Glycerophosphodiester phosphodiest 100.0
cd08609315 GDPD_GDE3 Glycerophosphodiester phosphodiesterase 100.0
cd08608351 GDPD_GDE2 Glycerophosphodiester phosphodiesterase 100.0
cd08582233 GDPD_like_2 Glycerophosphodiester phosphodiesteras 100.0
cd08559296 GDPD_periplasmic_GlpQ_like Periplasmic glycerophos 100.0
cd08575264 GDPD_GDE4_like Glycerophosphodiester phosphodieste 100.0
cd08579220 GDPD_memb_like Glycerophosphodiester phosphodieste 100.0
cd08567263 GDPD_SpGDE_like Glycerophosphodiester phosphodiest 100.0
cd08573258 GDPD_GDE1 Glycerophosphodiester phosphodiesterase 100.0
cd08561249 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodieste 100.0
cd08600318 GDPD_EcGlpQ_like Glycerophosphodiester phosphodies 100.0
cd08571302 GDPD_SHV3_plant Glycerophosphodiester phosphodiest 100.0
cd08566240 GDPD_AtGDE_like Glycerophosphodiester phosphodiest 100.0
cd08604300 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodi 100.0
cd08560356 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodi 100.0
PRK11143355 glpQ glycerophosphodiester phosphodiesterase; Prov 100.0
cd08570234 GDPD_YPL206cp_fungi Glycerophosphodiester phosphod 100.0
cd08602309 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodie 100.0
cd08583237 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetic 100.0
cd08585237 GDPD_like_3 Glycerophosphodiester phosphodiesteras 100.0
cd08613309 GDPD_GDE4_like_1 Glycerophosphodiester phosphodies 100.0
PF03009256 GDPD: Glycerophosphoryl diester phosphodiesterase 100.0
COG0584257 UgpQ Glycerophosphoryl diester phosphodiesterase [ 100.0
cd08603299 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodi 100.0
cd08556189 GDPD Glycerophosphodiester phosphodiesterase domai 100.0
cd08578300 GDPD_NUC-2_fungi Putative glycerophosphodiester ph 100.0
cd08555179 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositi 100.0
cd08584192 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetic 99.9
KOG2258341 consensus Glycerophosphoryl diester phosphodiester 99.83
cd08577228 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetic 99.59
cd08576265 GDPD_like_SMaseD_PLD Glycerophosphodiester phospho 99.44
KOG2421417 consensus Predicted starch-binding protein [Genera 98.9
PF1365330 GDPD_2: Glycerophosphoryl diester phosphodiesteras 98.61
cd08592229 PI-PLCc_gamma Catalytic domain of metazoan phospho 98.51
cd08627229 PI-PLCc_gamma1 Catalytic domain of metazoan phosph 98.42
KOG2421417 consensus Predicted starch-binding protein [Genera 98.11
cd08597260 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan 97.97
smart00148135 PLCXc Phospholipase C, catalytic domain (part); do 97.42
cd08594227 PI-PLCc_eta Catalytic domain of metazoan phosphoin 97.18
cd08632253 PI-PLCc_eta1 Catalytic domain of metazoan phosphoi 97.07
cd08633254 PI-PLCc_eta2 Catalytic domain of metazoan phosphoi 97.04
cd08631258 PI-PLCc_delta4 Catalytic domain of metazoan phosph 97.01
cd08596254 PI-PLCc_epsilon Catalytic domain of metazoan phosp 96.99
cd08595257 PI-PLCc_zeta Catalytic domain of metazoan phosphoi 96.99
cd08630258 PI-PLCc_delta3 Catalytic domain of metazoan phosph 96.99
cd08599228 PI-PLCc_plant Catalytic domain of plant phosphatid 96.97
cd08628254 PI-PLCc_gamma2 Catalytic domain of metazoan phosph 96.96
cd08558226 PI-PLCc_eukaryota Catalytic domain of eukaryotic p 96.96
cd08629258 PI-PLCc_delta1 Catalytic domain of metazoan phosph 96.94
cd08598231 PI-PLC1c_yeast Catalytic domain of putative yeast 96.88
cd08593257 PI-PLCc_delta Catalytic domain of metazoan phospho 96.85
cd08626257 PI-PLCc_beta4 Catalytic domain of metazoan phospho 96.81
cd08623258 PI-PLCc_beta1 Catalytic domain of metazoan phospho 96.74
cd08624261 PI-PLCc_beta2 Catalytic domain of metazoan phospho 96.72
cd08591257 PI-PLCc_beta Catalytic domain of metazoan phosphoi 96.61
PF10223244 DUF2181: Uncharacterized conserved protein (DUF218 96.57
cd08625258 PI-PLCc_beta3 Catalytic domain of metazoan phospho 96.44
KOG1264 1267 consensus Phospholipase C [Lipid transport and met 95.86
PLN02230 598 phosphoinositide phospholipase C 4 95.07
KOG0169 746 consensus Phosphoinositide-specific phospholipase 94.78
PLN02228 567 Phosphoinositide phospholipase C 94.44
PLN02952 599 phosphoinositide phospholipase C 93.83
PLN02223 537 phosphoinositide phospholipase C 93.4
PF10566 273 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: 93.29
PLN02222 581 phosphoinositide phospholipase C 2 92.91
cd00137274 PI-PLCc Catalytic domain of prokaryotic and eukary 91.85
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 90.88
KOG1265 1189 consensus Phospholipase C [Lipid transport and met 89.57
PF00388146 PI-PLC-X: Phosphatidylinositol-specific phospholip 88.86
COG0134254 TrpC Indole-3-glycerol phosphate synthase [Amino a 88.23
PLN02591250 tryptophan synthase 87.97
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 87.83
PRK13111258 trpA tryptophan synthase subunit alpha; Provisiona 87.66
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 87.07
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 86.65
PLN02591250 tryptophan synthase 86.15
PF00218254 IGPS: Indole-3-glycerol phosphate synthase; InterP 86.08
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 85.69
COG0159265 TrpA Tryptophan synthase alpha chain [Amino acid t 85.67
COG1954181 GlpP Glycerol-3-phosphate responsive antiterminato 84.64
PF04309175 G3P_antiterm: Glycerol-3-phosphate responsive anti 84.13
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 83.95
PF01081196 Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 83.95
cd04743 320 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma 83.31
COG2200256 Rtn c-di-GMP phosphodiesterase class I (EAL domain 82.75
PF04309175 G3P_antiterm: Glycerol-3-phosphate responsive anti 82.73
TIGR01182204 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho 82.71
PF04131192 NanE: Putative N-acetylmannosamine-6-phosphate epi 81.9
PF00290259 Trp_syntA: Tryptophan synthase alpha chain; InterP 81.76
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 81.09
PRK10550312 tRNA-dihydrouridine synthase C; Provisional 81.0
cd02812219 PcrB_like PcrB_like proteins. One member of this f 80.91
PRK06015201 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 80.02
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5 Back     alignment and domain information 
Probab=100.00  E-value=1.3e-51  Score=388.18  Aligned_cols=274  Identities=49%  Similarity=0.738  Sum_probs=211.9

Q ss_pred             EEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccCHH
Q 040734           49 VVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELSLS  128 (361)
Q Consensus        49 iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t~~  128 (361)
                      ||||||++.+..+.-..--..+||||++||++|++.|||+||+|||+||||++||+||.+++|+++|...++.|.++||+
T Consensus         2 ~ighrg~~~~~~~~~~~~~~~~~ENTl~Af~~A~~~Gad~vE~DV~lTkDg~~VV~HD~~l~r~~~g~~~~~~V~dlT~~   81 (282)
T cd08605           2 VIGHRGLGMNRASHQPSVGPGIRENTIASFIAASKFGADFVEFDVQVTRDGVPVIWHDDFIVVERGGEVESSRIRDLTLA   81 (282)
T ss_pred             eEeccCCCcCcccccccccCCCCCcHHHHHHHHHHcCCCEEEEEEEECcCCeEEEECCCceecccCCCcCccchhhCcHH
Confidence            89999998864431000012578999999999999999999999999999999999999999999872223899999999


Q ss_pred             HHhccCCccccccccccc-----cccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHH
Q 040734          129 EFLSYGPQREQGKIGKSL-----LRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVI  203 (361)
Q Consensus       129 eL~~l~~~~d~g~~~~~~-----~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v  203 (361)
                      ||++|    ++|.|+...     ++........+|....+++||||+|+|++++.++.++||||.+............++
T Consensus        82 EL~~l----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iPtL~evl~~~~~~~~l~IEiK~~~~~~~~~~~~~~~~  157 (282)
T cd08605          82 ELKAL----GPQAESTKTSTVALYRKAKDPEPEPWIMDVEDSIPTLEEVFSEVPPSLGFNIELKFGDDNKTEAEELVREL  157 (282)
T ss_pred             HHHhc----cccccccccCcchhhccccccccccccccccCCCCCHHHHHHhCCCCccEEEEEecCccccchHHHHHHHH
Confidence            99999    566554210     000001111112222468999999999999877899999997643211122233456


Q ss_pred             HHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCcccc
Q 040734          204 QAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVF  283 (361)
Q Consensus       204 ~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~  283 (361)
                      +.++++++++++.++++|+||+++.|+.+++..|.+++++++........+.+..++..+..++...++.++++++..+.
T Consensus       158 ~~v~~~i~~~~~~~~viisSF~~~~l~~l~~~~p~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (282)
T cd08605         158 RAILAVCKQHAPGRRIMFSSFDPDAAVLLRALQSLYPVMFLTDCGPYTHNDPRRNSIEAAIQVALEGGLQGIVSEVKVLL  237 (282)
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhcCccCCEEEEecCCCccccCchhhhHHHHHHHHHHcCCceEEecHHHhh
Confidence            88999999999889999999999999999999999999999864321122333344556667888899999998876545


Q ss_pred             CChHHHHHHHHcCCEEEEeccC--CCHHHHHHHHHhcCccEEEeCCh
Q 040734          284 RNPGAVTKIKESKLSLLTYGRL--NNVAEAVYMQHLMGIDGVIVDLV  328 (361)
Q Consensus       284 ~~~~~v~~~~~~Gl~v~~w~Tv--n~~~~~~~~~~~~GVdgI~TD~p  328 (361)
                      .++++++.+|++|+.|++| |+  |+++++.+++ ++||||||||++
T Consensus       238 ~~~~~v~~~~~~Gl~v~vW-Tv~~n~~~~~~~l~-~~GVdgIiTD~~  282 (282)
T cd08605         238 RNPTAVSLVKASGLELGTY-GKLNNDAEAVERQA-DLGVDGVIVDHV  282 (282)
T ss_pred             cCcHHHHHHHHcCcEEEEe-CCCCCCHHHHHHHH-HcCCCEEEeCCC
Confidence            6999999999999999999 88  9999999997 699999999985

This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins Back     alignment and domain information
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins Back     alignment and domain information
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional Back     alignment and domain information
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins Back     alignment and domain information
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins Back     alignment and domain information
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins Back     alignment and domain information
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins Back     alignment and domain information
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins Back     alignment and domain information
>cd08568 GDPD_TmGDE_like Glycerophosphodiester phosphodiesterase domain of Thermotoga maritime and similar proteins Back     alignment and domain information
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins Back     alignment and domain information
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins Back     alignment and domain information
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases Back     alignment and domain information
>cd08565 GDPD_pAtGDE_like Glycerophosphodiester phosphodiesterase domain of putative Agrobacterium tumefaciens glycerophosphodiester phosphodiesterase and similar proteins Back     alignment and domain information
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins Back     alignment and domain information
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins Back     alignment and domain information
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins Back     alignment and domain information
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins Back     alignment and domain information
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases Back     alignment and domain information
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins Back     alignment and domain information
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins Back     alignment and domain information
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases Back     alignment and domain information
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins Back     alignment and domain information
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins Back     alignment and domain information
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins Back     alignment and domain information
>cd08600 GDPD_EcGlpQ_like Glycerophosphodiester phosphodiesterase domain of Escherichia coli (GlpQ) and similar proteins Back     alignment and domain information
>cd08571 GDPD_SHV3_plant Glycerophosphodiester phosphodiesterase domain of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins Back     alignment and domain information
>cd08566 GDPD_AtGDE_like Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins Back     alignment and domain information
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins Back     alignment and domain information
>cd08560 GDPD_EcGlpQ_like_1 Glycerophosphodiester phosphodiesterase domain similar to Escherichia coli periplasmic phosphodiesterase (GlpQ) include uncharacterized proteins Back     alignment and domain information
>PRK11143 glpQ glycerophosphodiester phosphodiesterase; Provisional Back     alignment and domain information
>cd08570 GDPD_YPL206cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL206cp and similar proteins Back     alignment and domain information
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins Back     alignment and domain information
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases Back     alignment and domain information
>cd08585 GDPD_like_3 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases Back     alignment and domain information
>cd08613 GDPD_GDE4_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial homologs of mammalian glycerophosphodiester phosphodiesterase GDE4 Back     alignment and domain information
>PF03009 GDPD: Glycerophosphoryl diester phosphodiesterase family; InterPro: IPR004129 Glycerophosphoryl diester phosphodiesterases display broad specificity for glycerophosphodiesters; glycerophosphocholine, glycerophosphoethanolamine, glycerophosphoglycerol, and bis(glycerophosphoglycerol) all of which are are hydrolysed by this enzyme Back     alignment and domain information
>COG0584 UgpQ Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] Back     alignment and domain information
>cd08603 GDPD_SHV3_repeat_1 Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins Back     alignment and domain information
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins Back     alignment and domain information
>cd08578 GDPD_NUC-2_fungi Putative glycerophosphodiester phosphodiesterase domain of ankyrin repeat protein NUC-2 and similar proteins Back     alignment and domain information
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily Back     alignment and domain information
>cd08584 PI-PLCc_GDPD_SF_unchar2 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases Back     alignment and domain information
>KOG2258 consensus Glycerophosphoryl diester phosphodiesterase [Energy production and conversion] Back     alignment and domain information
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases Back     alignment and domain information
>cd08576 GDPD_like_SMaseD_PLD Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins Back     alignment and domain information
>KOG2421 consensus Predicted starch-binding protein [General function prediction only] Back     alignment and domain information
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A Back     alignment and domain information
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma Back     alignment and domain information
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1 Back     alignment and domain information
>KOG2421 consensus Predicted starch-binding protein [General function prediction only] Back     alignment and domain information
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein Back     alignment and domain information
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X Back     alignment and domain information
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta Back     alignment and domain information
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1 Back     alignment and domain information
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2 Back     alignment and domain information
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4 Back     alignment and domain information
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon Back     alignment and domain information
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta Back     alignment and domain information
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3 Back     alignment and domain information
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C Back     alignment and domain information
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2 Back     alignment and domain information
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins Back     alignment and domain information
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1 Back     alignment and domain information
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C Back     alignment and domain information
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta Back     alignment and domain information
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4 Back     alignment and domain information
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1 Back     alignment and domain information
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2 Back     alignment and domain information
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta Back     alignment and domain information
>PF10223 DUF2181: Uncharacterized conserved protein (DUF2181); InterPro: IPR019356 This is region of approximately 250 residues with no known function Back     alignment and domain information
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3 Back     alignment and domain information
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism] Back     alignment and domain information
>PLN02230 phosphoinositide phospholipase C 4 Back     alignment and domain information
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] Back     alignment and domain information
>PLN02228 Phosphoinositide phospholipase C Back     alignment and domain information
>PLN02952 phosphoinositide phospholipase C Back     alignment and domain information
>PLN02223 phosphoinositide phospholipase C Back     alignment and domain information
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02222 phosphoinositide phospholipase C 2 Back     alignment and domain information
>cd00137 PI-PLCc Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism] Back     alignment and domain information
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3 Back     alignment and domain information
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] Back     alignment and domain information
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] Back     alignment and domain information
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 Back     alignment and domain information
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) Back     alignment and domain information
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms] Back     alignment and domain information
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family Back     alignment and domain information
>TIGR01182 eda Entner-Doudoroff aldolase Back     alignment and domain information
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [] Back     alignment and domain information
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK10550 tRNA-dihydrouridine synthase C; Provisional Back     alignment and domain information
>cd02812 PcrB_like PcrB_like proteins Back     alignment and domain information
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
2pz0_A252 Crystal Structure Of Glycerophosphodiester Phosphod 6e-07
3qvq_A252 The Structure Of An Oleispira Antarctica Phosphodie 3e-06
3mz2_A292 Crystal Structure Of A Glycerophosphoryl Diester Ph 1e-04
3i10_A278 Crystal Structure Of Putative Glycerophosphoryl Die 2e-04
2otd_A247 The Crystal Structure Of The Glycerophosphodiester 5e-04
>pdb|2PZ0|A Chain A, Crystal Structure Of Glycerophosphodiester Phosphodiesterase (Gdpd) From T. Tengcongensis Length = 252 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 46  KFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFH 105
           K LV+ HRG   NV            EN+IA+F  + +   D IE DVQ+TKDG  V+ H
Sbjct: 11  KTLVIAHRGDSKNV-----------PENTIAAFKRAMELGADGIELDVQLTKDGHLVVIH 59
Query: 106 DDVIVSEDNGTIFEKRIT 123
           D+ +    NG  F K  T
Sbjct: 60  DETVDRTTNGEGFVKDFT 77
>pdb|3QVQ|A Chain A, The Structure Of An Oleispira Antarctica Phosphodiesterase Olei02445 In Complex With The Product Sn-Glycerol-3-Phosphate Length = 252 Back     alignment and structure
>pdb|3MZ2|A Chain A, Crystal Structure Of A Glycerophosphoryl Diester Phosphodiesterase (Bdi_3922) From Parabacteroides Distasonis Atcc 8503 At 1.55 A Resolution Length = 292 Back     alignment and structure
>pdb|3I10|A Chain A, Crystal Structure Of Putative Glycerophosphoryl Diester Phosphodiesterase (Np_812074.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.35 A Resolution Length = 278 Back     alignment and structure
>pdb|2OTD|A Chain A, The Crystal Structure Of The Glycerophosphodiester Phosphodiesterase From Shigella Flexneri 2a Length = 247 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query361
2pz0_A252 Glycerophosphoryl diester phosphodiesterase; glyce 9e-26
3no3_A238 Glycerophosphodiester phosphodiesterase; structura 2e-24
3l12_A313 Putative glycerophosphoryl diester phosphodiester; 3e-24
3qvq_A252 Phosphodiesterase OLEI02445; structural genomics, 4e-24
2o55_A258 Putative glycerophosphodiester phosphodiesterase; 6e-24
3ks6_A250 Glycerophosphoryl diester phosphodiesterase; struc 3e-23
2oog_A287 Glycerophosphoryl diester phosphodiesterase; phosp 6e-23
2otd_A247 Glycerophosphodiester phosphodiesterase; structura 1e-22
1o1z_A234 GDPD, glycerophosphodiester phosphodiesterase; TM1 3e-22
3mz2_A292 Glycerophosphoryl diester phosphodiesterase; struc 1e-21
1zcc_A248 Glycerophosphodiester phosphodiesterase; NYSGXRC, 1e-20
3ch0_A272 Glycerophosphodiester phosphodiesterase; YP_677622 2e-20
1vd6_A224 Glycerophosphoryl diester phosphodiesterase; glyce 5e-20
3i10_A278 Putative glycerophosphoryl diester phosphodiester; 2e-18
1ydy_A356 Glycerophosphoryl diester phosphodiesterase; struc 4e-14
3rlg_A302 Sphingomyelin phosphodiesterase D lisictox-alphai; 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Length = 252 Back     alignment and structure
 Score =  103 bits (258), Expect = 9e-26
 Identities = 65/301 (21%), Positives = 113/301 (37%), Gaps = 54/301 (17%)

Query: 36  MNKSASFRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQV 95
           M+        K LV+ HRG   NV            EN+IA+F  + +   D IE DVQ+
Sbjct: 1   MSHHHHHHSMKTLVIAHRGDSKNVP-----------ENTIAAFKRAMELGADGIELDVQL 49

Query: 96  TKDGWPVIFHDDVIVSEDNGTIFEKRITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKI 155
           TKDG  V+ HD+ +    NG      + + +L E             G     K    +I
Sbjct: 50  TKDGHLVVIHDETVDRTTNGE---GFVKDFTLEEIKKL-------DAGIKFGEKFAGERI 99

Query: 156 LHWNVEIDDSLCTLQEAFQQV-DPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFEFA 214
                       TL E F+ + D +   N+E+K    ++Y       + + ++K + E+ 
Sbjct: 100 P-----------TLYEVFELIGDKDFLVNIEIK-SGIVLYPG-----IEEKLIKAIKEYN 142

Query: 215 ENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQG 274
               +I S+F   +   ++K+     +  L   G           L E   + L      
Sbjct: 143 FEERVIISSFNHYSLRDVKKMAPHLKIGLLYQCG-----------LVEPWHMALRMEAYS 191

Query: 275 IVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEA 334
           +      +   P  V   K++ + L  +  ++   +   M    G+DG+I D  + +   
Sbjct: 192 LHPFYFNI--IPELVEGCKKNGVKLFPWT-VDRKEDMERMIK-AGVDGIITDDPETLINL 247

Query: 335 V 335
           V
Sbjct: 248 V 248
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} Length = 238 Back     alignment and structure
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Length = 313 Back     alignment and structure
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Length = 252 Back     alignment and structure
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Length = 258 Back     alignment and structure
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Length = 250 Back     alignment and structure
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Length = 287 Back     alignment and structure
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Length = 247 Back     alignment and structure
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Length = 234 Back     alignment and structure
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Length = 292 Back     alignment and structure
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Length = 248 Back     alignment and structure
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Length = 272 Back     alignment and structure
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Length = 224 Back     alignment and structure
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Length = 278 Back     alignment and structure
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Length = 356 Back     alignment and structure
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* Length = 302 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
2pz0_A252 Glycerophosphoryl diester phosphodiesterase; glyce 100.0
3qvq_A252 Phosphodiesterase OLEI02445; structural genomics, 100.0
2otd_A247 Glycerophosphodiester phosphodiesterase; structura 100.0
3ks6_A250 Glycerophosphoryl diester phosphodiesterase; struc 100.0
2oog_A287 Glycerophosphoryl diester phosphodiesterase; phosp 100.0
3l12_A313 Putative glycerophosphoryl diester phosphodiester; 100.0
2o55_A258 Putative glycerophosphodiester phosphodiesterase; 100.0
3ch0_A272 Glycerophosphodiester phosphodiesterase; YP_677622 100.0
1zcc_A248 Glycerophosphodiester phosphodiesterase; NYSGXRC, 100.0
3no3_A238 Glycerophosphodiester phosphodiesterase; structura 100.0
3mz2_A292 Glycerophosphoryl diester phosphodiesterase; struc 100.0
1o1z_A234 GDPD, glycerophosphodiester phosphodiesterase; TM1 100.0
1ydy_A356 Glycerophosphoryl diester phosphodiesterase; struc 100.0
1vd6_A224 Glycerophosphoryl diester phosphodiesterase; glyce 100.0
3i10_A278 Putative glycerophosphoryl diester phosphodiester; 100.0
1xx1_A285 Smase I, sphingomyelinase I; structure, quick cryo 100.0
3rlg_A302 Sphingomyelin phosphodiesterase D lisictox-alphai; 99.88
1djx_A 624 PLC-D1, phosphoinositide-specific phospholipase C, 96.15
2zkm_X 799 1-phosphatidylinositol-4,5-bisphosphate phosphodie 95.82
3qr0_A 816 Phospholipase C-beta (PLC-beta); PH domain, EF han 95.58
3ohm_B 885 1-phosphatidylinositol-4,5-bisphosphate phosphodi 94.89
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 89.91
3h4x_A339 Phosphatidylinositol-specific phospholipase C1; PI 89.22
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 89.06
3a24_A 641 Alpha-galactosidase; glycoside hydrolase family 97 88.34
2d73_A 738 Alpha-glucosidase SUSB; glycoside hydrolase family 87.19
1pii_A 452 N-(5'phosphoribosyl)anthranilate isomerase; bifunc 87.16
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 87.07
3kts_A192 Glycerol uptake operon antiterminator regulatory; 85.5
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 85.29
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 84.64
3lab_A217 Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) 84.61
2p10_A286 MLL9387 protein; putative phosphonopyruvate hydrol 84.04
2rbg_A126 Putative uncharacterized protein ST0493; hypotheti 83.77
3tsm_A272 IGPS, indole-3-glycerol phosphate synthase; struct 83.01
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 82.82
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 82.58
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 81.69
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 80.95
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis} Back     alignment and structure
Probab=100.00  E-value=1.7e-54  Score=400.07  Aligned_cols=244  Identities=23%  Similarity=0.332  Sum_probs=211.0

Q ss_pred             CCCCcceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCcccccc
Q 040734           42 FRIPKFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKR  121 (361)
Q Consensus        42 ~~~~~~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~  121 (361)
                      -.+.+|.+|||||+++           .+||||++||++|++.|||+||+|||+||||++||+||.+++|+|||.   +.
T Consensus         7 ~~~~~p~iiaHRG~~~-----------~~PENTl~Af~~A~~~Gad~iE~DV~lTkDG~lVv~HD~~l~Rtt~~~---g~   72 (252)
T 2pz0_A            7 HHSMKTLVIAHRGDSK-----------NVPENTIAAFKRAMELGADGIELDVQLTKDGHLVVIHDETVDRTTNGE---GF   72 (252)
T ss_dssp             ----CCEEEEETTTTT-----------TSCTTSHHHHHHHHHHTCSEEEEEEEECTTCCEEECSSSBSTTTSSCC---SB
T ss_pred             cccCCceEEEcCCCCC-----------CCCcchHHHHHHHHHcCCCEEEEEEEEecCCeEEEEcCCcccccCCCC---cc
Confidence            3457899999999987           799999999999999999999999999999999999999999999998   99


Q ss_pred             ccccCHHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCC-CceEEEEEecCCccchhhhHHH
Q 040734          122 ITELSLSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDP-NVGFNVELKFDDHIVYEQDYLI  200 (361)
Q Consensus       122 v~d~t~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~-~~~l~iEiK~~~~~~~~~~~~~  200 (361)
                      |.++||+||+++    ++|+|+.+.              +.+++||||+|+|+++++ ++.++||||.+... ++     
T Consensus        73 v~~~t~~eL~~l----~~~~~~~~~--------------~~~~~iPtL~evL~~~~~~~~~l~iEiK~~~~~-~~-----  128 (252)
T 2pz0_A           73 VKDFTLEEIKKL----DAGIKFGEK--------------FAGERIPTLYEVFELIGDKDFLVNIEIKSGIVL-YP-----  128 (252)
T ss_dssp             GGGSCHHHHTTS----CSSTTTCGG--------------GTTCCCCBHHHHHHHHTTSCCEEEEEECCSSCC-CT-----
T ss_pred             hhhCcHHHHhhc----CCCCCCCCC--------------CCCCcCCCHHHHHHHhhhcCCeEEEEeCCCCcc-cH-----
Confidence            999999999999    678776543              367899999999999974 79999999986421 12     


Q ss_pred             HHHHHHHHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCc
Q 040734          201 RVIQAILKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVK  280 (361)
Q Consensus       201 ~~v~~vl~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~  280 (361)
                      .+++.++++++++++.++++++||++..|+.+++..|++++++++.....   +        ...+++..++.++++++.
T Consensus       129 ~~~~~v~~~l~~~~~~~~vii~SF~~~~l~~~~~~~p~~~~~~l~~~~~~---~--------~~~~~~~~~~~~i~~~~~  197 (252)
T 2pz0_A          129 GIEEKLIKAIKEYNFEERVIISSFNHYSLRDVKKMAPHLKIGLLYQCGLV---E--------PWHMALRMEAYSLHPFYF  197 (252)
T ss_dssp             THHHHHHHHHHHTTCTTTEEEEESBHHHHHHHHHHCTTSEEEEEECSBCS---S--------THHHHHHTTCSEEEEBGG
T ss_pred             HHHHHHHHHHHhcCCCCCEEEEeCCHHHHHHHHHHCCCCCEEEEecCccc---c--------HHHHHHHcCCeEEecchh
Confidence            46788999999999999999999999999999999999999998864321   1        124566788999998876


Q ss_pred             cccCChHHHHHHHHcCCEEEEeccCCCHHHHHHHHHhcCccEEEeCChHHHHHHHHHh
Q 040734          281 GVFRNPGAVTKIKESKLSLLTYGRLNNVAEAVYMQHLMGIDGVIVDLVQEITEAVYDM  338 (361)
Q Consensus       281 ~~~~~~~~v~~~~~~Gl~v~~w~Tvn~~~~~~~~~~~~GVdgI~TD~p~~~~~~l~~~  338 (361)
                      .+  ++++|+.+|++|+.|++| |+|+++++.+++ ++|||||+||+|+.+.+++.++
T Consensus       198 ~~--~~~~v~~~~~~G~~v~~w-Tvn~~~~~~~l~-~~GvdgIiTD~P~~~~~~l~~~  251 (252)
T 2pz0_A          198 NI--IPELVEGCKKNGVKLFPW-TVDRKEDMERMI-KAGVDGIITDDPETLINLVRKG  251 (252)
T ss_dssp             GC--CHHHHHHHHHTTCEECCB-CCCSHHHHHHHH-HHTCSEEEESCHHHHHHHHC--
T ss_pred             cC--CHHHHHHHHHCCCEEEEE-CCCCHHHHHHHH-HcCCCEEEcCCHHHHHHHHhhc
Confidence            54  899999999999999999 999999999997 6999999999999999988654
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} Back     alignment and structure
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} Back     alignment and structure
>3ks6_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.80A {Agrobacterium tumefaciens str} PDB: 3ks5_A* Back     alignment and structure
>2oog_A Glycerophosphoryl diester phosphodiesterase; phosphatase, ST genomics, protein structure initiative, PSI; 2.20A {Staphylococcus aureus subsp} PDB: 2p76_A Back     alignment and structure
>3l12_A Putative glycerophosphoryl diester phosphodiester; struct genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.60A {Silicibacter pomeroyi} Back     alignment and structure
>2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} Back     alignment and structure
>3ch0_A Glycerophosphodiester phosphodiesterase; YP_677622.1, glycerophosphoryl diester phosphodiesterase, ST genomics; HET: MSE CIT GOL; 1.50A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1zcc_A Glycerophosphodiester phosphodiesterase; NYSGXRC, agrobacterium tumefaciens STR. C58, structural genomics; 2.50A {Agrobacterium tumefaciens str} SCOP: c.1.18.3 Back     alignment and structure
>3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0 Back     alignment and structure
>3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} Back     alignment and structure
>1o1z_A GDPD, glycerophosphodiester phosphodiesterase; TM1621, glycerophosphodiester phosphodiesterase (GDPD), STRU genomics, JCSG, PSI; 1.60A {Thermotoga maritima} SCOP: c.1.18.3 Back     alignment and structure
>1ydy_A Glycerophosphoryl diester phosphodiesterase; structural genomics, PSI, protein structu initiative; 1.70A {Escherichia coli} SCOP: c.1.18.3 PDB: 1t8q_A Back     alignment and structure
>1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A Back     alignment and structure
>3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} Back     alignment and structure
>1xx1_A Smase I, sphingomyelinase I; structure, quick cryo-soaking, activity, smase D, hydrolase; HET: EPE; 1.75A {Loxosceles laeta} PDB: 2f9r_A* Back     alignment and structure
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* Back     alignment and structure
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Back     alignment and structure
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B Back     alignment and structure
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A Back     alignment and structure
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>3h4x_A Phosphatidylinositol-specific phospholipase C1; PI-PLC, Ca2+-dependent, catalytic TIM barrel, disulfide-LINK loop, hydrolase; 1.23A {Streptomyces antibioticus} PDB: 3h4w_A Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>3a24_A Alpha-galactosidase; glycoside hydrolase family 97, retaining glycosidase; HET: MES; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* Back     alignment and structure
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 Back     alignment and structure
>2rbg_A Putative uncharacterized protein ST0493; hypothetical protein, structural genomics, unknown function, NPPSFA; 1.75A {Sulfolobus tokodaii} Back     alignment and structure
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 361
d1ydya1328 c.1.18.3 (A:29-356) Glycerophosphodiester phosphod 7e-19
d1zcca1240 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodi 6e-16
d1vd6a1217 c.1.18.3 (A:8-224) Putative glycerophosphodiester 2e-11
d1o1za_226 c.1.18.3 (A:) Hypothetical protein TM1621 {Thermot 5e-10
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Length = 328 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase GlpQ
species: Escherichia coli [TaxId: 562]

 Score = 84.0 bits (206), Expect = 7e-19
 Identities = 47/329 (14%), Positives = 100/329 (30%), Gaps = 60/329 (18%)

Query: 46  KFLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFH 105
           + +V+ HRG    +            E+++ +   +     D++E D+ +TKD   V+ H
Sbjct: 2   EKIVIAHRGASGYLP-----------EHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLH 50

Query: 106 DDVI---------VSEDNGTIFEKRITELSLSEF----LSYGPQREQGKIGKSLLRKTKD 152
           D  +           +           + +L E      + G   E GK  ++   +   
Sbjct: 51  DHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPM 110

Query: 153 GKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAILKIVFE 212
           GK        ++ +  +Q        N+G   E+K       E   +      +LK    
Sbjct: 111 GKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGY 170

Query: 213 FAENRPIIFSTFQPDAAVLIR-----KLQSTYPVFFLTNGGTEIFYDVRRNSL------- 260
             ++  +    F  D    I+     K+     +  L           ++          
Sbjct: 171 TGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNY 230

Query: 261 -------------EEAVKVCLEGGLQGIVSEVKGVFRNPGAVTKIKESKLSLLTYGRLNN 307
                        E A  +  +  +    +   G  +  G V   +++KL +  Y  + +
Sbjct: 231 DWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYT-VRS 289

Query: 308 VAEAVYMQHL----------MGIDGVIVD 326
                Y   +           G++G+  D
Sbjct: 290 DKLPEYTPDVNQLYDALYNKAGVNGLFTD 318
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Length = 240 Back     information, alignment and structure
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Length = 217 Back     information, alignment and structure
>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Length = 226 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query361
d1zcca1240 Glycerophosphodiester phosphodiesterase UgpQ {Agro 100.0
d1o1za_226 Hypothetical protein TM1621 {Thermotoga maritima [ 100.0
d1vd6a1217 Putative glycerophosphodiester phosphodiesterase T 100.0
d1ydya1328 Glycerophosphodiester phosphodiesterase GlpQ {Esch 100.0
d1qasa3327 Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus n 96.61
d2zkmx4349 Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI 96.09
d1vhca_212 Hypothetical protein HI0047 {Haemophilus influenza 90.76
d1a53a_247 Indole-3-glycerophosphate synthase, IPGS {Archaeon 85.35
d1wbha1213 KDPG aldolase {Escherichia coli [TaxId: 562]} 82.98
d1vkfa_172 Glycerol uptake operon antiterminator-related prot 82.65
d1mxsa_216 KDPG aldolase {Pseudomonas putida [TaxId: 303]} 81.85
>d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: PLC-like phosphodiesterases
family: Glycerophosphoryl diester phosphodiesterase
domain: Glycerophosphodiester phosphodiesterase UgpQ
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=100.00  E-value=7.2e-51  Score=370.57  Aligned_cols=233  Identities=18%  Similarity=0.227  Sum_probs=193.1

Q ss_pred             ceEEEecCCCCCCCCcchhhhcccccchHHHHHHHHhCCCCEEEEeeeeecCCcEEEEcCCCcccccCCccccccccccC
Q 040734           47 FLVVGHRGHGMNVLQSSDKRMQAIKENSIASFNSSAKYPLDFIEFDVQVTKDGWPVIFHDDVIVSEDNGTIFEKRITELS  126 (361)
Q Consensus        47 ~~iiaHRG~~~~~~~~~~~~~~~~pENTl~Af~~A~~~Gad~vE~DV~lTkDg~~Vv~HD~~l~r~t~g~~~~~~v~d~t  126 (361)
                      +.||||||+++           .+||||++||++|++.|+++||+|||+||||++||+||.+++|+||+.   +.|+++|
T Consensus         2 t~iiaHRG~~~-----------~~pENT~~a~~~A~~~G~~~iE~Dv~~TkDg~~Vv~HD~~l~r~t~~~---~~v~~~t   67 (240)
T d1zcca1           2 TKIVSHRGANR-----------FAPENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTNGT---GPVGHML   67 (240)
T ss_dssp             CEEEETTTTTT-----------TSCSSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSSCC---SBSTTSC
T ss_pred             CEEEECCCCCC-----------CCCccHHHHHHHHHHcCCCEEEEEEEEecCCCEEEecccccccccccc---ccHHHhh
Confidence            47999999987           799999999999999999999999999999999999999999999998   9999999


Q ss_pred             HHHHhccCCccccccccccccccccCCcccccccccCCcccCHHHHHHhCCCCceEEEEEecCCccchhhhHHHHHHHHH
Q 040734          127 LSEFLSYGPQREQGKIGKSLLRKTKDGKILHWNVEIDDSLCTLQEAFQQVDPNVGFNVELKFDDHIVYEQDYLIRVIQAI  206 (361)
Q Consensus       127 ~~eL~~l~~~~d~g~~~~~~~~~~~~g~~~~~~~~~~~~iptL~EvL~~~~~~~~l~iEiK~~~~~~~~~~~~~~~v~~v  206 (361)
                      |+||+++    ++|+|+...              +.+++||||+|+|++++.++.++||+|.+..            +.+
T Consensus        68 ~~el~~l----~~~~~~~~~--------------~~~~~IptL~evl~~~~~~~~l~iEiK~~~~------------~~v  117 (240)
T d1zcca1          68 SSEIDTL----DAGGWFDDR--------------FKGAIVPRLDAYLEHLRGRAGVYIELKYCDP------------AKV  117 (240)
T ss_dssp             HHHHTTS----CSSTTTCGG--------------GTTCCCCBHHHHHHHHTTTCEEEEEEEESCH------------HHH
T ss_pred             HHHHHHh----hccCcCccc--------------cCCCcCChHHHhhhcccccceeEEEEccCcc------------hhh
Confidence            9999999    577765432              4678999999999999988999999998642            346


Q ss_pred             HHHHHHhcCCCCEEEEcCCHHHHHHHHHHCCCCCEEEEccCCCccccccccccHHHHHHHHHhcCCcEEEcCCccccCCh
Q 040734          207 LKIVFEFAENRPIIFSTFQPDAAVLIRKLQSTYPVFFLTNGGTEIFYDVRRNSLEEAVKVCLEGGLQGIVSEVKGVFRNP  286 (361)
Q Consensus       207 l~~l~~~~~~~rv~~~Sf~~~~l~~l~~~~p~~~~~~l~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~  286 (361)
                      .+++++++..++++++||+++.++++++..|+++++++......       ..+    ..+ ......+..... .+.++
T Consensus       118 ~~l~~~~~~~~~v~~~Sf~~~~l~~~~~~~P~~~~~~~~~~~~~-------~~~----~~~-~~~~~~~~~~~~-~~~~~  184 (240)
T d1zcca1         118 AALVRHLGMVRDTFYFSFSEEMRQGLQSIAPEFRRMMTLDIAKS-------PSL----VGA-VHHASIIEITPA-QMRRP  184 (240)
T ss_dssp             HHHHHHHTCSTTEEEECSCHHHHHHHHHHCTTSEEEEEHHHHSS-------THH----HHH-TTCCSEEEECHH-HHHSH
T ss_pred             hHHHHHHHhhcccccccccHHHHHHHHHhhhccceEEeeccccc-------chh----HHH-Hhcccccccchh-hhCCH
Confidence            77788889999999999999999999999999999998743210       111    111 122223332221 23589


Q ss_pred             HHHHHHHHcCCEEEEeccCCCHHHH-HHHHHhcCccEEEeCChHHHHHHHHHh
Q 040734          287 GAVTKIKESKLSLLTYGRLNNVAEA-VYMQHLMGIDGVIVDLVQEITEAVYDM  338 (361)
Q Consensus       287 ~~v~~~~~~Gl~v~~w~Tvn~~~~~-~~~~~~~GVdgI~TD~p~~~~~~l~~~  338 (361)
                      ++++.+|++|+.|++| |+|++.++ +++. .+|||||+||+|+.+.++++++
T Consensus       185 ~~v~~~~~~Gl~v~~w-Tvnd~~~~~~~l~-~~gVdgI~TD~P~l~~~vr~~~  235 (240)
T d1zcca1         185 GIIEASRKAGLEIMVY-YGGDDMAVHREIA-TSDVDYINLDRPDLFAAVRSGM  235 (240)
T ss_dssp             HHHHHHHHHTCEEEEE-CCCCCHHHHHHHH-HSSCSEEEESCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEE-ccCCHHHHHHHHH-HcCCCEEEeCcHHHHHHHHHHH
Confidence            9999999999999999 99876554 5564 7999999999999999988765
>d1o1za_ c.1.18.3 (A:) Hypothetical protein TM1621 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vd6a1 c.1.18.3 (A:8-224) Putative glycerophosphodiester phosphodiesterase TTHB141 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ydya1 c.1.18.3 (A:29-356) Glycerophosphodiester phosphodiesterase GlpQ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure