Citrus Sinensis ID: 040753

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MAKVRPLPISVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRLL
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEEEEEEEEEEcccEEEEcccccEEEEEEEcccccccEEEEEcccccEEEEEEccccccccccccccccccccccccccccEEEEEcEEEEEEcccEEEEEEEcccccEEEccEEEccEEEEEEccccEEEEEEEEEEEcccccEEEEcEEEEEEEEccccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEEEEEEEEEccccEEEEEccccEEEEEcccccccccEEEEEccccccEEEEEcccccHcccEEEEEcccccccccccccEEEEEEcccEEcccccEEEEEEcccccEEEcccEcccEEEEEEEcccccEEEEEEEEEEEccccEEEcccEEEEEEcccccHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
makvrplpisveaaSKRESFTVWMKSLVMQgngctvfnengeivyridnydnkgsneVYLMDLRGNVLFTILRRVRVFGRLwrgykgdndgsnlnkekpsfevtkkGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGmrkqsrsgsgvllgddvltlsvephvdRSFIMALVTVYGLMNRLL
Flexible Loop (DISEMBL)
makvrplpisveaaskresFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWrgykgdndgsnlnkekpsfevtkkgeitllsNNEASCYKLKLEaasatgrtksaalfkiidCRRGVVVAEgmrkqsrsgsgvllgDDVLTLSvephvdrsfIMALVTVYGLMNRLL
Low Complexity Region (SEG)
MAKVRPLPISVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRLL
Disordered region (IsUnstruct)
******************SFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKG*********************ITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGM*******SGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMN***
Disordered Region (DISOPRED)
*****PLPISVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRG***************SFEVTKKGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRLL
Disordered Region (DISEMBL)
MAKVRPLPISVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRLL
Disordered Region (DISPRO)
***VRPLPISVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRLL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKVRPLPISVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q9SH27	215	Protein LURP-one-related	yes	no	0.909	0.837	0.412	2e-30
Q9LUM1	230	Protein LURP-one-related	yes	no	0.888	0.765	0.384	4e-29
Q67XV7	217	Protein LURP-one-related	no	no	0.904	0.824	0.364	1e-26
Q8LG32	217	Protein LURP-one-related	no	no	0.904	0.824	0.364	1e-26
Q9ZVI6	196	Protein LURP-one-related	no	no	0.929	0.938	0.339	8e-15
Q9LVZ8	220	Protein LURP-one-related	no	no	0.848	0.763	0.302	8e-13
Q9SSC7	210	Protein LURP-one-related	no	no	0.823	0.776	0.304	5e-12
A0MFL4	221	Protein LURP-one-related	no	no	0.868	0.778	0.311	6e-12

>sp|Q9SH27|LOR4_ARATH Protein LURP-one-related 4 OS=Arabidopsis thaliana GN=At1g63410 PE=3 SV=1

 Score =  132 bits (331), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/201 (41%), Positives = 120/201 (59%), Gaps = 21/201 (10%)

Query: 1   MAKVRPLPI--SVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEV 58
           MA+V P     S   +++RE+FTVWMKSLV Q NG TV+N NGEI YR++NYD K SNEV
Sbjct: 1   MARVFPQAAISSPYMSTERETFTVWMKSLVYQTNGLTVYNSNGEITYRVENYD-KCSNEV 59

Query: 59  YLMDLRGNVLFTIL-RRVRVFGRLWRGYKGDNDGSNLNKEKPSFEV----TKKGEITLLS 113
           ++MDL GN+LFTI  +++ +FG  W  Y+     ++  + KP   +     + G+  +  
Sbjct: 60  HIMDLHGNILFTIRKKKLWLFGS-WYVYRECGSFTSTEEVKPCARIKRSSIRDGDWEVRD 118

Query: 114 NNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTL 173
                 + L+ +   A         F+IID   G ++A+   KQ  S +G+ LG+DVLTL
Sbjct: 119 ETNEVFWILRFDPKFA---------FQIIDI-HGNIIAQVKPKQ--SSNGITLGEDVLTL 166

Query: 174 SVEPHVDRSFIMALVTVYGLM 194
            V+P VD S ++ LVTVYGL+
Sbjct: 167 EVKPRVDHSLVVTLVTVYGLI 187

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUM1|LOR11_ARATH Protein LURP-one-related 11 OS=Arabidopsis thaliana GN=At3g14260 PE=2 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 19/195 (9%)

Query: 14  ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILR 73
            +++ESFT+WMKSLV   NGCTVF+  G I+YR+DNY++K   EVYLMDL G+VLFT+ R
Sbjct: 45  TTEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYNSKSCREVYLMDLSGHVLFTLRR 104

Query: 74  RVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKLEAASATGRT 133
           +     + W GY+  +       +   F V K     + + + +S Y++     + + R 
Sbjct: 105 QKFGLFKTWEGYRSSSATVESTTKLEYFRV-KNNVFQVPNKDSSSSYRVN----AGSCRN 159

Query: 134 KSAALFKII----------DCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSF 183
                +K++          +C  G ++AE  RKQS   +G+ LGDDVLT+ VE  VD SF
Sbjct: 160 DEQYCYKMVTRGSSLAIEDNC--GKLLAEVKRKQSI--NGLKLGDDVLTMMVESQVDHSF 215

Query: 184 IMALVTVYGLMNRLL 198
           I+ LV  + L+N +L
Sbjct: 216 IIGLVLAHSLINCIL 230

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q67XV7|LOR3_ARATH Protein LURP-one-related 3 OS=Arabidopsis thaliana GN=At1g53890 PE=2 SV=2

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 110/214 (51%), Gaps = 35/214 (16%)

Query: 1   MAKVRP---LPISVEA---------ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRID 48
           M K+ P    P+ ++           +++E FT+WMKSLV    GCTVF+  G ++YR+D
Sbjct: 13  MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72

Query: 49  NYDNKG-SNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNK--------EKP 99
           NYD+K  SNEVY MDL G +LFT+ ++   F + W GY        L K           
Sbjct: 73  NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGYNSTGTRFRLRKIFKILPRESSS 132

Query: 100 SFEVTKKGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSR 159
           S++V     I  +  ++ SCYK+              ++F I D   G ++AE   K S 
Sbjct: 133 SYKVVMGSRI--VDGDQQSCYKI----------VNRGSVFAIKDG-SGRLMAEVKNKLS- 178

Query: 160 SGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGL 193
             SG+ LGDDVLT+ VEP +D S IM +V  Y L
Sbjct: 179 DISGLDLGDDVLTMMVEPQLDHSLIMGIVIAYKL 212

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LG32|LOR2_ARATH Protein LURP-one-related 2 OS=Arabidopsis thaliana GN=At1g53870 PE=2 SV=2

 Score =  119 bits (298), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/214 (36%), Positives = 110/214 (51%), Gaps = 35/214 (16%)

Query: 1   MAKVRP---LPISVEA---------ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRID 48
           M K+ P    P+ ++           +++E FT+WMKSLV    GCTVF+  G ++YR+D
Sbjct: 13  MVKIYPHLAFPVDMDVVQDKILPYLTTEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVD 72

Query: 49  NYDNKG-SNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNK--------EKP 99
           NYD+K  SNEVY MDL G +LFT+ ++   F + W GY        L K           
Sbjct: 73  NYDSKSWSNEVYFMDLNGKILFTLRQKKLGFFKSWEGYNSTGTRFRLRKIFKILPRESSS 132

Query: 100 SFEVTKKGEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSR 159
           S++V     I  +  ++ SCYK+              ++F I D   G ++AE   K S 
Sbjct: 133 SYKVVMGSRI--VDGDQQSCYKI----------VNRGSVFAIKDG-SGRLMAEVKNKLS- 178

Query: 160 SGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGL 193
             SG+ LGDDVLT+ VEP +D S IM +V  Y L
Sbjct: 179 DISGLDLGDDVLTMMVEPQLDHSLIMGIVIAYKL 212

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVI6|LOR8_ARATH Protein LURP-one-related 8 OS=Arabidopsis thaliana GN=At2g38640 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 70/206 (33%), Positives = 99/206 (48%), Gaps = 22/206 (10%)

Query: 1   MAKVRP-LPISVEAA---SKRES-FTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGS 55
           M KV P  P + E +   SK     TVW KSL+   +G TV+N NGE+V+R+DNY N   
Sbjct: 1   MTKVHPKFPSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR 60

Query: 56  NEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNN 115
           + + LMD  G  L +I R+    G  W  Y G+ +        P F  T +  ++++SN 
Sbjct: 61  DNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGETE------RDPIF--TARKNVSIISNR 112

Query: 116 EA----SCYKLKLEAASATGRTKSAALFKIIDCRRG-VVVAEGMRKQSRSGSGVLLGDDV 170
           ++    S  K  L     +   +S    KI+D RR     AE  RK++  G GV  G DV
Sbjct: 113 KSLAWVSAKKTVLYEIEGSYGQRSC---KILDERRNKKKTAEIKRKETVIG-GVAFGKDV 168

Query: 171 LTLSVEPHVDRSFIMALVTVYGLMNR 196
             L VE  ++    MAL  +   M R
Sbjct: 169 YKLIVESEMEPRVAMALTIILDQMFR 194

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LVZ8|LOR12_ARATH Protein LURP-one-related 12 OS=Arabidopsis thaliana GN=At3g15810 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 14/182 (7%)

Query: 18  ESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNY--DNKGSNEVYLMDLRGNVLFTILRRV 75
           +  TV   SL   G+G   ++  G+I++R+D+Y  D + ++E+ LMD  G  L T+ R+ 
Sbjct: 31  KPLTVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLLTVKRKR 90

Query: 76  RVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKLEAASATG--RT 133
               + W G+ G+        +KP F V ++  I      E   Y    E     G    
Sbjct: 91  PTLHQRWEGFLGERS----EGQKPIFSV-RRSSIIGRCTMEVEVYDGTGEEYIIDGDFSQ 145

Query: 134 KSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGL 193
           +S  ++    C     VAE  RK   S + V+LG DV TL ++P  D +F M LV V   
Sbjct: 146 RSCLIYDTKKC----TVAEIKRKVDAS-TNVMLGRDVFTLEIKPGFDGAFAMGLVVVLDQ 200

Query: 194 MN 195
           +N
Sbjct: 201 IN 202

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSC7|LOR5_ARATH Protein LURP-one-related 5 OS=Arabidopsis thaliana GN=At1g80120 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 94/184 (51%), Gaps = 21/184 (11%)

Query: 16  KRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNY---DNKGSNEVYLMDLRGNVLFTIL 72
           +  S TV   SL   G+G TV++  G +V+R+D+Y   + + ++EV LMD  G  L T+ 
Sbjct: 15  EERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRCLLTLR 74

Query: 73  RRVRVFGRLWRGYKGD-NDGSNLNKEKPSFEVTK-----KGEITLLSNNEASCYKLKLEA 126
           R+     R W GY G+ +DG     +KP F V +     +  +T+    +  C +  +E 
Sbjct: 75  RKRPSLRRRWEGYLGERSDG-----QKPIFGVRRSSIIGRNSVTVEVYGDYQCSEYLIEG 129

Query: 127 ASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMA 186
           +        A    +++      VAE +R++  + + V+LG DV +L+V+P  D +F M 
Sbjct: 130 SFG------ARNCTVVEAETRRKVAE-IRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMG 182

Query: 187 LVTV 190
           LV V
Sbjct: 183 LVLV 186

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|A0MFL4|LOR17_ARATH Protein LURP-one-related 17 OS=Arabidopsis thaliana GN=At5g41590 PE=2 SV=2

 Score = 70.9 bits (172), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 14/186 (7%)

Query: 19  SFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRV- 77
           + TVW KSL++   G TV + NG+++YR+DNY      E+ LMD  GN L  + R  ++ 
Sbjct: 38  TLTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYARTRPEELILMDKDGNSLLLMHRTKKIT 97

Query: 78  FGRLWRGYKG-DNDGSNLNKEKPSFEVTKKGEITLLSNNE---ASCYKLKLEAASA---- 129
               W  Y+  D  G     + P++ + K  ++ +LS      A  Y    +  ++    
Sbjct: 98  LVDSWGIYEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDILAYVYSGSFDKKNSYIIK 157

Query: 130 -TGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALV 188
            + R KS    KI+       V E  RK+ R+  GV  G DV  L V P  D    MALV
Sbjct: 158 GSYRCKSC---KIVHVPLNKTVVEIKRKEVRT-KGVRFGSDVFDLVVNPGFDTGLAMALV 213

Query: 189 TVYGLM 194
            +   M
Sbjct: 214 LLLDQM 219

Might be related to the phospholipid scramblase and tubby-like superfamily of membrane tethered transcription factors.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
224071818	206	predicted protein [Populus trichocarpa]	0.949	0.912	0.537	4e-49
224058555	206	predicted protein [Populus trichocarpa]	0.944	0.907	0.539	6e-49
297742543	210	unnamed protein product [Vitis vinifera]	0.929	0.876	0.532	1e-46
225426371	204	PREDICTED: protein LURP-one-related 4 [V	0.929	0.901	0.532	1e-46
255537415	209	GTP binding protein, putative [Ricinus c	0.813	0.770	0.567	6e-45
225426373	206	PREDICTED: protein LURP-one-related 4 [V	0.919	0.883	0.504	8e-44
297742542	399	unnamed protein product [Vitis vinifera]	0.919	0.456	0.495	1e-43
225426375	202	PREDICTED: protein LURP-one-related 4 [V	0.863	0.846	0.510	6e-42
255537417	195	GTP binding protein, putative [Ricinus c	0.954	0.969	0.509	3e-40
224071809	196	predicted protein [Populus trichocarpa]	0.944	0.954	0.492	5e-39

>gi|224071818|ref|XP_002303578.1| predicted protein [Populus trichocarpa] gi|222841010|gb|EEE78557.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (506), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 116/216 (53%), Positives = 139/216 (64%), Gaps = 28/216 (12%)

Query: 1   MAKVRPLP----------ISVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNY 50
           MAKV  LP           +   +SK E+FT+WMKSLVMQ NGCTV+NENGE+VYR+DNY
Sbjct: 1   MAKVHALPQVDSSSCSTSTNSYISSKPETFTIWMKSLVMQTNGCTVYNENGEVVYRVDNY 60

Query: 51  DNKGSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEI- 109
           D KGSN+VYLMDL+GNVLFTILRR   F R WRGYK  +DG  L  ++P F+  K  EI 
Sbjct: 61  DKKGSNKVYLMDLKGNVLFTILRRKLFFFRQWRGYK--SDGLKLRNQEPYFQ-AKSTEIF 117

Query: 110 -------TLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGS 162
                    + ++EA   +   +  S  G+      FKI +   G +VAE  RKQ  S S
Sbjct: 118 QGNLSCRITVRSSEAPDQRCHYKLESLAGKLA----FKITNS-NGEIVAEAKRKQ--SSS 170

Query: 163 GVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRLL 198
           GVLLGDDVLTL VEPHVD SFI+ LVTVYGLM+  L
Sbjct: 171 GVLLGDDVLTLVVEPHVDHSFIIGLVTVYGLMHHKL 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058555|ref|XP_002299542.1| predicted protein [Populus trichocarpa] gi|222846800|gb|EEE84347.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (505), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 117/217 (53%), Positives = 138/217 (63%), Gaps = 30/217 (13%)

Query: 1   MAKVRPLP---------ISVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYD 51
           MAKV   P          +   +SK E+FT+WMKSL+MQ NGCTVFN+NGEIVYR+DNYD
Sbjct: 1   MAKVHAFPQVDSSSCSASTSCMSSKPETFTIWMKSLLMQTNGCTVFNKNGEIVYRVDNYD 60

Query: 52  NK-GSNEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGE-- 108
            K GSNEVYLMDL+GNVLFTILRR     R W+GYK  +DG  L  ++P F+V ++ E  
Sbjct: 61  KKAGSNEVYLMDLKGNVLFTILRRKLFLFRQWKGYK--SDGLKLKTQEPYFQVKRRSEIF 118

Query: 109 -------ITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSG 161
                  IT+ S++       KLEA S          FKI +   G +VAE  RK  RS 
Sbjct: 119 EGDLSCQITVRSSDAQESCSYKLEALSG------KLAFKITNS-NGEIVAEAKRK--RSS 169

Query: 162 SGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRLL 198
            GVLLGDDVLTL VEPH D SFIMALVTVYGLM+  L
Sbjct: 170 KGVLLGDDVLTLVVEPHTDHSFIMALVTVYGLMHHKL 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742543|emb|CBI34692.3| unnamed protein product [Vitis vinifera]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 144/214 (67%), Gaps = 30/214 (14%)

Query: 1   MAKVRP-----LPISVEA----ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYD 51
           MAKV P      P+S  +     SKRE+FT+WMKSLV+QGNGCTVFN +GEIVYRIDNYD
Sbjct: 1   MAKVHPQTFTAAPLSPPSDSCITSKREAFTIWMKSLVIQGNGCTVFNSDGEIVYRIDNYD 60

Query: 52  NKGSNEVYLMDLRGNVLFTIL-RRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEI- 109
            K S+EVYLMDL+G VLFTIL R++RVFGR W GYK  ++GS  N +KP F+V K   I 
Sbjct: 61  KKCSSEVYLMDLQGKVLFTILQRKLRVFGR-WEGYK--SNGSKGNNQKPWFQVRKNCRIL 117

Query: 110 -------TLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGS 162
                    +  NEA  Y  +++  +     KSA  FKI+D  +G ++AE  +KQ  + S
Sbjct: 118 GGGSSCQVTVRPNEAQSYCYRIQGLTG----KSA--FKIVD-SQGGLLAEVEQKQ--TSS 168

Query: 163 GVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNR 196
           GV+LG+DVL L VEPHVD S +MALV VYGL++ 
Sbjct: 169 GVVLGEDVLNLVVEPHVDHSLVMALVAVYGLIHH 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426371|ref|XP_002269437.1| PREDICTED: protein LURP-one-related 4 [Vitis vinifera]

 Score =  191 bits (485), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/214 (53%), Positives = 144/214 (67%), Gaps = 30/214 (14%)

Query: 1   MAKVRP-----LPISVEA----ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYD 51
           MAKV P      P+S  +     SKRE+FT+WMKSLV+QGNGCTVFN +GEIVYRIDNYD
Sbjct: 1   MAKVHPQTFTAAPLSPPSDSCITSKREAFTIWMKSLVIQGNGCTVFNSDGEIVYRIDNYD 60

Query: 52  NKGSNEVYLMDLRGNVLFTIL-RRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEI- 109
            K S+EVYLMDL+G VLFTIL R++RVFGR W GYK  ++GS  N +KP F+V K   I 
Sbjct: 61  KKCSSEVYLMDLQGKVLFTILQRKLRVFGR-WEGYK--SNGSKGNNQKPWFQVRKNCRIL 117

Query: 110 -------TLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGS 162
                    +  NEA  Y  +++  +     KSA  FKI+D + G ++AE  +KQ  + S
Sbjct: 118 GGGSSCQVTVRPNEAQSYCYRIQGLTG----KSA--FKIVDSQGG-LLAEVEQKQ--TSS 168

Query: 163 GVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNR 196
           GV+LG+DVL L VEPHVD S +MALV VYGL++ 
Sbjct: 169 GVVLGEDVLNLVVEPHVDHSLVMALVAVYGLIHH 202

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537415|ref|XP_002509774.1| GTP binding protein, putative [Ricinus communis] gi|223549673|gb|EEF51161.1| GTP binding protein, putative [Ricinus communis]

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 109/192 (56%), Positives = 129/192 (67%), Gaps = 31/192 (16%)

Query: 16  KRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRV 75
           K ES+T+WMKSLVMQ NGCTV+N+NGEIVYR+DNYD KGS+EVYLMDL+G VLFTI  R 
Sbjct: 32  KTESYTIWMKSLVMQANGCTVYNDNGEIVYRVDNYDKKGSSEVYLMDLKGRVLFTI--RK 89

Query: 76  RVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASC-------------YKL 122
           ++  R W+GYK D   S   K+KP F+V +   I  L  N  SC             YKL
Sbjct: 90  QLLFRQWKGYKSDELKS--RKQKPFFQVRQSSRI--LKRN-LSCKIAVRSGTWQDGYYKL 144

Query: 123 KLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRS 182
           K  A       KSA  FKI D   G +VA+  RKQ  + +G++LGDDVLTL+VEPHVD S
Sbjct: 145 KASAG------KSA--FKITDSNGG-LVAKATRKQ--TSTGIVLGDDVLTLAVEPHVDHS 193

Query: 183 FIMALVTVYGLM 194
           FIMALVTVYGLM
Sbjct: 194 FIMALVTVYGLM 205

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426373|ref|XP_002269469.1| PREDICTED: protein LURP-one-related 4 [Vitis vinifera]

 Score =  182 bits (461), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/218 (50%), Positives = 140/218 (64%), Gaps = 36/218 (16%)

Query: 1   MAKVRP-LPISVEA----------ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDN 49
           MAKV P +P +V             S+RE+FT+WMKSLV+QGNG TVFN +GEIVYRIDN
Sbjct: 1   MAKVHPQMPAAVPPPPPPPSDSCITSRRETFTLWMKSLVIQGNGYTVFNSDGEIVYRIDN 60

Query: 50  YDNKGSNEVYLMDLRGNVLFTIL-RRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKK-- 106
           YD K S+EVYLMDL+G VLFTIL R++ VFGR W GYK   +GS  + +KP F+V K   
Sbjct: 61  YDKKCSSEVYLMDLQGKVLFTILQRKLHVFGR-WEGYK--CNGSKADSQKPCFQVRKHCR 117

Query: 107 -------GEITLLSNNEASC-YKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQS 158
                   E+T+  N   SC Y+++  A  +T        FKI++   G V+AE   KQ 
Sbjct: 118 ILGGGSSCEVTVRPNEAQSCYYRIQGLAGKST--------FKIVN-SEGGVMAE--VKQK 166

Query: 159 RSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNR 196
           ++ SGV+LGDDVL L VEPHVD S +MALV V GL++ 
Sbjct: 167 QTSSGVVLGDDVLNLVVEPHVDHSLVMALVAVCGLIHH 204

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742542|emb|CBI34691.3| unnamed protein product [Vitis vinifera]

 Score =  181 bits (459), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/218 (49%), Positives = 138/218 (63%), Gaps = 36/218 (16%)

Query: 1   MAKVRP-LPISVEA----------ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDN 49
           MAKV P +P +V             S+RE+FT+WMKSLV+QGNG TVFN +GEIVYRIDN
Sbjct: 194 MAKVHPQMPAAVPPPPPPPSDSCITSRRETFTLWMKSLVIQGNGYTVFNSDGEIVYRIDN 253

Query: 50  YDNKGSNEVYLMDLRGNVLFTIL-RRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKK-- 106
           YD K S+EVYLMDL+G VLFTIL R++ VFGR W GYK   +GS  + +KP F+V K   
Sbjct: 254 YDKKCSSEVYLMDLQGKVLFTILQRKLHVFGR-WEGYK--CNGSKADSQKPCFQVRKHCR 310

Query: 107 -------GEITLLSNNEASC-YKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQS 158
                   E+T+  N   SC Y+++  A  +T        FKI++   GV+      KQ 
Sbjct: 311 ILGGGSSCEVTVRPNEAQSCYYRIQGLAGKST--------FKIVNSEGGVMAEV---KQK 359

Query: 159 RSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNR 196
           ++ SGV+LGDDVL L VEPHVD S +MALV V GL++ 
Sbjct: 360 QTSSGVVLGDDVLNLVVEPHVDHSLVMALVAVCGLIHH 397

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426375|ref|XP_002269503.1| PREDICTED: protein LURP-one-related 4 [Vitis vinifera]

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/192 (51%), Positives = 126/192 (65%), Gaps = 21/192 (10%)

Query: 14  ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILR 73
            S+RE+FT+WMKSLV++GNG TVFN +GEIVYR+DNYD K S+EVYLMDL+G VLFTILR
Sbjct: 21  TSRRETFTLWMKSLVIRGNGYTVFNSDGEIVYRMDNYDKKCSSEVYLMDLQGKVLFTILR 80

Query: 74  R-VRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEI--------TLLSNNEASCYKLKL 124
           R +RVFGR W GYK    GS +  +KP F+V K   I          +  NEA  Y  ++
Sbjct: 81  RKLRVFGR-WEGYK--CSGSKVGSQKPCFQVRKHCRILGGGSSCEVTVRPNEAQSYHYRI 137

Query: 125 EAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFI 184
           +  +        + FKI++   GV+      KQ ++ SGV+LGDDVL L VEPHVD S +
Sbjct: 138 QGLAG------KSTFKIVNSEGGVMAEV---KQKQTSSGVVLGDDVLDLVVEPHVDHSLV 188

Query: 185 MALVTVYGLMNR 196
           MALV V GL++ 
Sbjct: 189 MALVAVCGLIHH 200

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537417|ref|XP_002509775.1| GTP binding protein, putative [Ricinus communis] gi|223549674|gb|EEF51162.1| GTP binding protein, putative [Ricinus communis]

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/204 (50%), Positives = 132/204 (64%), Gaps = 15/204 (7%)

Query: 1   MAKVRPLPISVEAAS-----KRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGS 55
           MAKV P   +   A      +RE+FTVWMKSLV   NGCTVF+ NGEIVYR++NYD K S
Sbjct: 1   MAKVFPHRAAPSPAFDLMTFRRETFTVWMKSLVCHTNGCTVFDTNGEIVYRVENYDKKCS 60

Query: 56  NEVYLMDLRGNVLFTILR-RVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSN 114
           +EVYLMDLRG VL TI R R+ +FG  W GY+ +   +++NKEKP F+V K   I +   
Sbjct: 61  SEVYLMDLRGRVLVTIRRKRLLLFGS-WYGYRWNV--ADINKEKPWFQVRKCCSICM--G 115

Query: 115 NEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLS 174
           N A    +  +        + AA F+I+D   G  VAE   KQ +S SG+ LGDDVLTL 
Sbjct: 116 NLACQVTVGFDKYWIVKLGQRAA-FRIVD-FEGDAVAE--VKQKQSSSGITLGDDVLTLI 171

Query: 175 VEPHVDRSFIMALVTVYGLMNRLL 198
           VEPH+D S +MA++TVYGL+NR L
Sbjct: 172 VEPHMDHSLVMAIITVYGLINRKL 195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071809|ref|XP_002303577.1| predicted protein [Populus trichocarpa] gi|222841009|gb|EEE78556.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/201 (49%), Positives = 127/201 (63%), Gaps = 14/201 (6%)

Query: 1   MAKVRPL---PISVEAAS-KRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSN 56
           MAKV P    P+     S ++E+FT+WMKSLV Q NGCTVF+ NG+IVYRIDNYD K S+
Sbjct: 1   MAKVFPHSQRPVLDPFVSLEKETFTIWMKSLVCQTNGCTVFDSNGDIVYRIDNYDKKCSS 60

Query: 57  EVYLMDLRGNVLFTILRRVRVFGRL--WRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSN 114
           +VYLMDLRG VL TI+RR R+   +  W GY+ + D    N+EKP F+V   G   L+  
Sbjct: 61  KVYLMDLRGRVLVTIIRRKRLLQIVGCWYGYRWNPDA---NEEKPWFQVKTYGR--LICM 115

Query: 115 NEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLS 174
              +C            +  S   F+I++  R  V+AE   KQ +  SG+ LGDDVLTL 
Sbjct: 116 GSFACQVTVGFDKYWVVKLGSKQAFRIVNIDRE-VIAE--VKQKQLSSGISLGDDVLTLV 172

Query: 175 VEPHVDRSFIMALVTVYGLMN 195
           VEPH+D S IMA+VTVYGL+N
Sbjct: 173 VEPHIDHSLIMAIVTVYGLIN 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2091040	230	AT3G14260 "AT3G14260" [Arabido	0.893	0.769	0.411	2.7e-29
TAIR|locus:2197036	217	AT1G53870 "AT1G53870" [Arabido	0.833	0.760	0.393	5.7e-27
TAIR|locus:2197046	580	AT1G53880 "AT1G53880" [Arabido	0.818	0.279	0.344	7e-23
TAIR|locus:2814880	580	AT1G53900 "AT1G53900" [Arabido	0.818	0.279	0.344	7e-23
TAIR|locus:2064179	196	AT2G38640 "AT2G38640" [Arabido	0.929	0.938	0.339	1.1e-16
TAIR|locus:2016299	210	AT1G80120 "AT1G80120" [Arabido	0.823	0.776	0.320	3.3e-15
TAIR|locus:2093242	220	AT3G15810 "AT3G15810" [Arabido	0.843	0.759	0.310	8.8e-15
TAIR|locus:2160427	221	AT5G41590 "AT5G41590" [Arabido	0.868	0.778	0.311	3.8e-14

TAIR|locus:2091040 AT3G14260 "AT3G14260" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 79/192 (41%), Positives = 115/192 (59%)

Query:    15 SKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRR 74
             +++ESFT+WMKSLV   NGCTVF+  G I+YR+DNY++K   EVYLMDL G+VLFT LRR
Sbjct:    46 TEQESFTIWMKSLVFNTNGCTVFDSKGNIIYRVDNYNSKSCREVYLMDLSGHVLFT-LRR 104

Query:    75 VRVFG--RLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKLEAASATGR 132
              + FG  + W GY+  +       +   F V K     + + + +S Y++   +     +
Sbjct:   105 QK-FGLFKTWEGYRSSSATVESTTKLEYFRV-KNNVFQVPNKDSSSSYRVNAGSCRNDEQ 162

Query:   133 ------TKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMA 186
                   T+ ++L    +C  G ++AE  RKQS +G  + LGDDVLT+ VE  VD SFI+ 
Sbjct:   163 YCYKMVTRGSSLAIEDNC--GKLLAEVKRKQSING--LKLGDDVLTMMVESQVDHSFIIG 218

Query:   187 LVTVYGLMNRLL 198
             LV  + L+N +L
Sbjct:   219 LVLAHSLINCIL 230

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2197036 AT1G53870 "AT1G53870" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 74/188 (39%), Positives = 102/188 (54%)

Query:    15 SKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKG-SNEVYLMDLRGNVLFTILR 73
             +++E FT+WMKSLV    GCTVF+  G ++YR+DNYD+K  SNEVY MDL G +LFT+ +
Sbjct:    39 TEQERFTIWMKSLVFNSKGCTVFDSKGNLIYRVDNYDSKSWSNEVYFMDLNGKILFTLRQ 98

Query:    74 RVRVFGRLWRGYKGDNDGSNLNK--------EKPSFEVTKKGEITLLSNNEASCYKLKLE 125
             +   F + W GY        L K           S++V     I  +  ++ SCYK+   
Sbjct:    99 KKLGFFKSWEGYNSTGTRFRLRKIFKILPRESSSSYKVVMGSRI--VDGDQQSCYKI--- 153

Query:   126 AASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIM 185
                        ++F I D   G ++AE   K S   SG+ LGDDVLT+ VEP +D S IM
Sbjct:   154 -------VNRGSVFAIKD-GSGRLMAEVKNKLSDI-SGLDLGDDVLTMMVEPQLDHSLIM 204

Query:   186 ALVTVYGL 193
              +V  Y L
Sbjct:   205 GIVIAYKL 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197046 AT1G53880 "AT1G53880" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 7.0e-23, P = 7.0e-23
 Identities = 64/186 (34%), Positives = 105/186 (56%)

Query:    15 SKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRR 74
             +++ESFT+WM+SLV    GCTVF+  G ++YR+DNY++K  +EVYLMDL G +LFT+ ++
Sbjct:    27 TEKESFTIWMRSLVFHSKGCTVFDSKGNLIYRVDNYNSKSCSEVYLMDLYGKILFTLRQK 86

Query:    75 VRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEIT---------LLSNNEASCYKLKLE 125
                  + W+GY  ++ G+     K +F++  KG  +         ++  +  SCYK+   
Sbjct:    87 KLGLFKSWKGY--NSTGTRFQLRK-NFKILPKGSSSSYKVVMGSRIVDGDHQSCYKI--- 140

Query:   126 AASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIM 185
                     K  ++F I D   G ++AE  +KQS   S + LG DVLT+ VEP ++     
Sbjct:   141 -------VKRKSVFTIED-GSGRLLAEVKKKQSNIKS-LDLGKDVLTMMVEPQLETEIFE 191

Query:   186 ALVTVY 191
               + ++
Sbjct:   192 EFIKMW 197

GO:0003743 "translation initiation factor activity" evidence=ISS;IBA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005525 "GTP binding" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA

GO:0006413 "translational initiation" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=IBA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IBA

TAIR|locus:2814880 AT1G53900 "AT1G53900" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 7.0e-23, P = 7.0e-23
 Identities = 64/186 (34%), Positives = 105/186 (56%)

Query:    15 SKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRR 74
             +++ESFT+WM+SLV    GCTVF+  G ++YR+DNY++K  +EVYLMDL G +LFT+ ++
Sbjct:    27 TEKESFTIWMRSLVFHSKGCTVFDSKGNLIYRVDNYNSKSCSEVYLMDLYGKILFTLRQK 86

Query:    75 VRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEIT---------LLSNNEASCYKLKLE 125
                  + W+GY  ++ G+     K +F++  KG  +         ++  +  SCYK+   
Sbjct:    87 KLGLFKSWKGY--NSTGTRFQLRK-NFKILPKGSSSSYKVVMGSRIVDGDHQSCYKI--- 140

Query:   126 AASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIM 185
                     K  ++F I D   G ++AE  +KQS   S + LG DVLT+ VEP ++     
Sbjct:   141 -------VKRKSVFTIED-GSGRLLAEVKKKQSNIKS-LDLGKDVLTMMVEPQLETEIFE 191

Query:   186 ALVTVY 191
               + ++
Sbjct:   192 EFIKMW 197

GO:0003743 "translation initiation factor activity" evidence=ISS;IBA

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA

GO:0005525 "GTP binding" evidence=ISS

GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA

GO:0006413 "translational initiation" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=IBA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050790 "regulation of catalytic activity" evidence=IBA

TAIR|locus:2064179 AT2G38640 "AT2G38640" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 70/206 (33%), Positives = 99/206 (48%)

Query:     1 MAKVRP-LPISVEAA---SKRES-FTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGS 55
             M KV P  P + E +   SK     TVW KSL+   +G TV+N NGE+V+R+DNY N   
Sbjct:     1 MTKVHPKFPSTCEESLCDSKAAVVLTVWKKSLLFNCDGFTVYNANGELVFRVDNYMNCPR 60

Query:    56 NEVYLMDLRGNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNN 115
             + + LMD  G  L +I R+    G  W  Y G+ +        P F  T +  ++++SN 
Sbjct:    61 DNIVLMDASGFPLLSIRRKKLSLGDCWMVYDGETE------RDPIF--TARKNVSIISNR 112

Query:   116 EA----SCYKLKLEAASATGRTKSAALFKIIDCRRGVV-VAEGMRKQSRSGSGVLLGDDV 170
             ++    S  K  L     +   +S    KI+D RR     AE  RK++  G GV  G DV
Sbjct:   113 KSLAWVSAKKTVLYEIEGSYGQRSC---KILDERRNKKKTAEIKRKETVIG-GVAFGKDV 168

Query:   171 LTLSVEPHVDRSFIMALVTVYGLMNR 196
               L VE  ++    MAL  +   M R
Sbjct:   169 YKLIVESEMEPRVAMALTIILDQMFR 194

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016299 AT1G80120 "AT1G80120" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 59/184 (32%), Positives = 95/184 (51%)

Query:    16 KRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNY---DNKGSNEVYLMDLRGNVLFTIL 72
             +  S TV   SL   G+G TV++  G +V+R+D+Y   + + ++EV LMD  G  L T+ 
Sbjct:    15 EERSLTVRKTSLFFAGDGFTVYDCKGSLVFRVDSYGGPNTRDTDEVVLMDAHGRCLLTLR 74

Query:    73 RRVRVFGRLWRGYKGD-NDGSNLNKEKPSFEVTK-----KGEITLLSNNEASCYKLKLEA 126
             R+     R W GY G+ +DG     +KP F V +     +  +T+    +  C +  +E 
Sbjct:    75 RKRPSLRRRWEGYLGERSDG-----QKPIFGVRRSSIIGRNSVTVEVYGDYQCSEYLIEG 129

Query:   127 ASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMA 186
             +      ++  + +  + RR V  AE  RK   S + V+LG DV +L+V+P  D +F M 
Sbjct:   130 SFGA---RNCTVVEA-ETRRKV--AEIRRKVDAS-TNVMLGKDVFSLNVKPGFDGAFAMG 182

Query:   187 LVTV 190
             LV V
Sbjct:   183 LVLV 186

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2093242 AT3G15810 "AT3G15810" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 55/177 (31%), Positives = 84/177 (47%)

Query:    21 TVWMKSLVMQGNGCTVFNENGEIVYRIDNY--DNKGSNEVYLMDLRGNVLFTILRRVRVF 78
             TV   SL   G+G   ++  G+I++R+D+Y  D + ++E+ LMD  G  L T+ R+    
Sbjct:    34 TVCKTSLFYTGDGFAAYDCRGDIIFRVDSYGPDTRDNDEIVLMDATGKCLLTVKRKRPTL 93

Query:    79 GRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKLEAASATGRTKSAAL 138
              + W G+ G+        +KP F V ++  I      E   Y    E     G     + 
Sbjct:    94 HQRWEGFLGERSEG----QKPIFSV-RRSSIIGRCTMEVEVYDGTGEEYIIDGDFSQRSC 148

Query:   139 FKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMN 195
               I D ++   VAE  RK   S + V+LG DV TL ++P  D +F M LV V   +N
Sbjct:   149 L-IYDTKK-CTVAEIKRKVDAS-TNVMLGRDVFTLEIKPGFDGAFAMGLVVVLDQIN 202

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160427 AT5G41590 "AT5G41590" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 58/186 (31%), Positives = 86/186 (46%)

Query:    19 SFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVRV- 77
             + TVW KSL++   G TV + NG+++YR+DNY      E+ LMD  GN L  + R  ++ 
Sbjct:    38 TLTVWRKSLLVSCEGFTVIDSNGDLIYRVDNYARTRPEELILMDKDGNSLLLMHRTKKIT 97

Query:    78 FGRLWRGYKG-DNDGSNLNKEKPSFEVTKKGEITLLSNNE---ASCYKLKLEAASA---- 129
                 W  Y+  D  G     + P++ + K  ++ +LS      A  Y    +  ++    
Sbjct:    98 LVDSWGIYEANDTKGETKIPKCPTWYMRKNLKMNILSTKSDILAYVYSGSFDKKNSYIIK 157

Query:   130 -TGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALV 188
              + R KS    KI+       V E  RK+ R+  GV  G DV  L V P  D    MALV
Sbjct:   158 GSYRCKSC---KIVHVPLNKTVVEIKRKEVRT-KGVRFGSDVFDLVVNPGFDTGLAMALV 213

Query:   189 TVYGLM 194
              +   M
Sbjct:   214 LLLDQM 219


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.135   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      198       198   0.00083  111 3  11 22  0.47    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  152 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.68u 0.13s 17.81t   Elapsed:  00:00:01
  Total cpu time:  17.68u 0.13s 17.81t   Elapsed:  00:00:01
  Start:  Sat May 11 10:30:06 2013   End:  Sat May 11 10:30:07 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SH27	LOR4_ARATH	No assigned EC number	0.4129	0.9090	0.8372	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00030976 hypothetical protein (206 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
pfam04525	185	pfam04525, Tub_2, Tubby C 2	1e-33

>gnl|CDD|218129 pfam04525, Tub_2, Tubby C 2

 Score =  118 bits (297), Expect = 1e-33
 Identities = 64/193 (33%), Positives = 93/193 (48%), Gaps = 15/193 (7%)

Query: 5   RPLPISVEAASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLR 64
             +  S   + + E  TVW KSLV  G+G TV++ NG +V+R+D Y    S+E  LMD  
Sbjct: 1   MVVVSSEYLSPEPEDLTVWRKSLVFNGDGFTVYDSNGNLVFRVDGYAFGLSDERVLMDSS 60

Query: 65  GNVLFTILRRVRVFGRLWRGYKGDNDGSNLNKEKPSFEVTKKGEITLLSNNEASCYKLKL 124
           GN L TI R+       W  Y+G+        + P F V +   + L +++     +   
Sbjct: 61  GNPLLTIRRKKLSLHDRWEVYRGEGTEG----KDPLFTVRRSSIVQLKTSSSVFSKRNSN 116

Query: 125 EAASATG----RTKSAAL---FKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEP 177
                        K + L    KI D     ++AE  R+ S+   GV LG DV T++V+P
Sbjct: 117 VIVDDEKNCDFDIKGSFLDRSCKIYD-DSDKLIAEVKRQTSK---GVFLGKDVYTVTVKP 172

Query: 178 HVDRSFIMALVTV 190
            VD +FIMALV V
Sbjct: 173 EVDYAFIMALVVV 185

The structure of this family has been solved. It comprises a 12-stranded beta barrel with a central C-terminal alpha helix. This helix is thought to be a transmembrane helix. It is structurally similar to the C-terminal domain of the Tubby protein. In plants it plays a role in defense against pathogens. Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	100.0
COG4894	159	Uncharacterized conserved protein [Function unknow	100.0
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	99.37
COG4894	159	Uncharacterized conserved protein [Function unknow	98.0
PF04525	187	Tub_2: Tubby C 2; InterPro: IPR007612 This is a fa	96.97
KOG0621	292	consensus Phospholipid scramblase [Cell wall/membr	96.55
PF03803	221	Scramblase: Scramblase ; InterPro: IPR005552 Scram	95.77

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=100.00  E-value=1.2e-40  Score=272.19  Aligned_cols=161  Identities=37%  Similarity=0.536  Sum_probs=103.4

Q ss_pred             CCceeEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEc-ccCCCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEeCCCCC
Q 040753           14 ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDN-YDNKGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYKGDNDG   91 (198)
Q Consensus        14 ~~~~~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg-~~~s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~g~~~~   91 (198)
                      +++|++|+||||++++++|+|+|+|++|+++|+|+| +.+++++++.|+|++|+||++|++|.+ ++++ |++|.+++.+
T Consensus        10 ~~~~~~l~v~~k~~~~~~~~f~V~D~~G~~vf~V~g~~~~s~~~~~~l~D~~G~~L~~i~~k~~~l~~~-w~i~~~~~~~   88 (187)
T PF04525_consen   10 SPQPVTLTVKKKSLSFSGDDFTVYDENGNVVFRVDGGKFFSIGKKRTLMDASGNPLFTIRRKLFSLRPT-WEIYRGGGSE   88 (187)
T ss_dssp             -SS-EEEEEE----------EEEEETTS-EEEEEE--SCTTBTTEEEEE-TTS-EEEEEE--------E-EEEEETT---
T ss_pred             CCCceEEEEEEEEeeecCCCEEEEcCCCCEEEEEEEecccCCCCEEEEECCCCCEEEEEEeeecccceE-EEEEECCCCc
Confidence            788999999999999999999999999999999999 899999999999999999999999999 9999 9999987432


Q ss_pred             CCCCCccCeEEEeee--------EEEEEcCC-------CceeeEEEEeeeccCCCCcCccceeEEEeCCCCeEEEEEEee
Q 040753           92 SNLNKEKPSFEVTKK--------GEITLLSN-------NEASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRK  156 (198)
Q Consensus        92 ~~~~~~~~~f~vk~~--------~~v~l~~~-------~~~~~~~v~~~~~~~~G~~~~~~~~~I~~~~~g~~VAev~rk  156 (198)
                          .++++|++|++        +.+|+...       .+.++|+|+       |+|++++ |+|++. +|++||||+||
T Consensus        89 ----~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~-------G~~~~~~-~~I~~~-~g~~VA~i~rk  155 (187)
T PF04525_consen   89 ----GKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIK-------GNFWDRS-FTIYDS-GGRVVAEISRK  155 (187)
T ss_dssp             ----GGGEEEEEE----------EEEEET--T----------SEEEE-------S-TTTT---EEEEC-C--EEEEEEE-
T ss_pred             ----cCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEE-------EEecCcE-EEEEEc-CCCEEEEEecc
Confidence                24689999988        67777621       267799999       9999999 999975 69999999998


Q ss_pred             eecCCCceeeecceEEEEEeCCCCHHHHHHHHHH
Q 040753          157 QSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVTV  190 (198)
Q Consensus       157 ~~~~~~~~~~~~dty~l~V~pgvD~a~i~aLvv~  190 (198)
                      +..  ++++.|+|+|.|+|+||+|++||||||||
T Consensus       156 ~~~--k~~~~~~dty~l~V~pg~D~~lv~alvvi  187 (187)
T PF04525_consen  156 YSS--KKWFSGRDTYTLTVAPGVDQALVVALVVI  187 (187)
T ss_dssp             -----------B-SEEEEE-TTSBHHHHHHHHHH
T ss_pred             cce--eeEEecCcEEEEEEcCCCCHHHheeEEeC
Confidence            886  88888999999999999999999999986

; PDB: 1ZXU_A 2Q4M_A.

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.5e-33  Score=216.81  Aligned_cols=151  Identities=19%  Similarity=0.275  Sum_probs=134.8

Q ss_pred             eEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEeCCCCCCCCCC
Q 040753           18 ESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYKGDNDGSNLNK   96 (198)
Q Consensus        18 ~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~g~~~~~~~~~   96 (198)
                      .+|.|++|..++ |+.|.|||..|+.+|+|+|+++++++.+++.|++|.+|.+|++|++ ++|+ |++..|+        
T Consensus         6 ~tl~mkQk~~~~-gd~f~I~d~dgE~af~VeGs~f~i~dtlti~Da~G~~l~~i~~kll~l~~~-yeI~d~~--------   75 (159)
T COG4894           6 ITLFMKQKMFSF-GDAFHIYDRDGEEAFKVEGSFFSIGDTLTITDASGKTLVSIEQKLLSLLPR-YEISDGG--------   75 (159)
T ss_pred             HhHhhhhhhhhc-ccceEEECCCCcEEEEEeeeEEeeCceEEEEecCCCChHHHHHHHhhccce-eEEEcCC--------
Confidence            467888887666 7999999999999999999999999999999999999999999999 9999 9999986        


Q ss_pred             ccCeEEEeeeEEEEEcCCC-ceeeEEEEeeeccCCCCcCccceeEEEeCCCCeEEEEEEeeeecCCCceeeecceEEEEE
Q 040753           97 EKPSFEVTKKGEITLLSNN-EASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSV  175 (198)
Q Consensus        97 ~~~~f~vk~~~~v~l~~~~-~~~~~~v~~~~~~~~G~~~~~~~~~I~~~~~g~~VAev~rk~~~~~~~~~~~~dty~l~V  175 (198)
                       ..+|.++|+++|+-..-- ...+|+++       ||+|+.+ |++.+|  ++++|||+|||++       |+|||.|+|
T Consensus        76 -g~~~~vrKK~tf~Rdk~e~d~~~~eih-------GNi~d~e-fkl~dg--~~~~aeVsKkwf~-------~rdTY~l~v  137 (159)
T COG4894          76 -GTVCEVRKKVTFSRDKFEIDGLNWEIH-------GNIWDDE-FKLTDG--ENVRAEVSKKWFS-------WRDTYHLQV  137 (159)
T ss_pred             -CCEEEEEEEEEEEeeeEEEcCCCeEEe-------cceeceE-EEEecC--CceehhheeeeEe-------ccceEEEEE
Confidence             458999999887632100 22369999       9999999 999997  5799999999999       999999999


Q ss_pred             eCCCCHHHHHHHHHHhhcccc
Q 040753          176 EPHVDRSFIMALVTVYGLMNR  196 (198)
Q Consensus       176 ~pgvD~a~i~aLvv~lD~i~~  196 (198)
                      +|+.|.++|+|+++|||++.+
T Consensus       138 apde~a~lii~i~VaLD~v~~  158 (159)
T COG4894         138 APDEDALLIIAIAVALDMVLY  158 (159)
T ss_pred             cCchhhHHHHHHHHHHHHHhc
Confidence            999999999999999999875

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=99.37  E-value=6.4e-11  Score=98.64  Aligned_cols=165  Identities=14%  Similarity=0.114  Sum_probs=113.6

Q ss_pred             eeEEEEEEEEeEE-------eCCCeEEEeCCCCEEEEEEcccCC---------CCCeEEEEcCCCCeEEEEEeeee-ec-
Q 040753           17 RESFTVWMKSLVM-------QGNGCTVFNENGEIVYRIDNYDNK---------GSNEVYLMDLRGNVLFTILRRVR-VF-   78 (198)
Q Consensus        17 ~~~ltv~~K~~~~-------sg~~ftV~D~~G~~vyrVdg~~~s---------~~~~~~l~D~~G~~Ll~i~~k~l-~~-   78 (198)
                      --.+.|+++.-.+       ..+.|.|+|.+|+.+|.+....-.         .+-+..++|..|+++++|+|..- .. 
T Consensus        21 ~~~l~I~Q~~e~~e~~~~~e~~N~Y~I~n~~g~~i~~~~E~s~~~~R~~~~~~R~f~~~i~D~~g~~vl~i~Rp~~c~~C  100 (221)
T PF03803_consen   21 LDQLLIKQQIEPLEIFTGFETPNRYDIKNPNGQQIYYAVEESDCCSRQCCGSHRPFKMHIYDNYGREVLTIERPFKCCSC  100 (221)
T ss_pred             CCEEEEEEEEEEeceecccccCceEEEECCCCCEEEEEEEeCcceeeeecCCCCCEEEEEEecCCCEEEEEEcCCcceec
Confidence            3566677766432       237999999999999988655211         13456789999999999999764 32 


Q ss_pred             -----CeeeEEEeCCCCCCCCCCccCeEEEeee-------EEEEEcCCCceeeEEEEeeeccCCCCcCccceeEEEeCCC
Q 040753           79 -----GRLWRGYKGDNDGSNLNKEKPSFEVTKK-------GEITLLSNNEASCYKLKLEAASATGRTKSAALFKIIDCRR  146 (198)
Q Consensus        79 -----~~~w~~~~g~~~~~~~~~~~~~f~vk~~-------~~v~l~~~~~~~~~~v~~~~~~~~G~~~~~~~~~I~~~~~  146 (198)
                           .+ .+++.+.        ++++-+|+.+       ++|+-+.+  ..-++|++-+..- +.+.+.. |.|++. +
T Consensus       101 ~~~~~~~-~~V~~p~--------g~~iG~I~q~~~~~~~~f~I~d~~~--~~~~~I~gp~~~~-~~~~~~~-F~I~~~-~  166 (221)
T PF03803_consen  101 CPCCLQE-MEVESPP--------GNLIGSIRQPFSCCRPNFDIFDANG--NPIFTIKGPCCCC-SCCCDWE-FEIKDP-N  166 (221)
T ss_pred             cccccee-EEEecCC--------CcEEEEEEEcCcccceEEEEEECCC--ceEEEEeCCccee-cccccee-eeeecc-c
Confidence                 34 5554432        2455555554       44444432  4568888211100 1246777 999997 5


Q ss_pred             CeEEEEEEeeeecCCCceeeecceEEEEEeCCCCH---HHHHHHHHHhhccc
Q 040753          147 GVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDR---SFIMALVTVYGLMN  195 (198)
Q Consensus       147 g~~VAev~rk~~~~~~~~~~~~dty~l~V~pgvD~---a~i~aLvv~lD~i~  195 (198)
                      |+.||+|+|+|..-.....-..|.|.|+..+..|.   |+++|.++.||.++
T Consensus       167 ~~~vg~I~k~w~G~~~e~~t~~d~f~i~Fp~~l~~~~Kalll~a~~liD~~~  218 (221)
T PF03803_consen  167 GQEVGSITKKWSGFCRELFTDADNFVIEFPPDLDVEQKALLLGAAFLIDYMY  218 (221)
T ss_pred             CcEEEEEEEecCCcchhhccccceEEEEcCCCCCHHHHHHHHHHHHHhhhhh
Confidence            79999999999852233445689999999988876   88999999999875

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

>COG4894 Uncharacterized conserved protein [Function unknown]

Probab=98.00  E-value=1.6e-05  Score=62.68  Aligned_cols=70  Identities=14%  Similarity=0.134  Sum_probs=61.9

Q ss_pred             CCceeEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEe
Q 040753           14 ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYK   86 (198)
Q Consensus        14 ~~~~~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~   86 (198)
                      ...++++.|.=+.++. +|.|+|+|+.|..++.++.+.+++..+..|.|++|+ ++.+++|.. ++++ |++--
T Consensus        26 ~dgE~af~VeGs~f~i-~dtlti~Da~G~~l~~i~~kll~l~~~yeI~d~~g~-~~~vrKK~tf~Rdk-~e~d~   96 (159)
T COG4894          26 RDGEEAFKVEGSFFSI-GDTLTITDASGKTLVSIEQKLLSLLPRYEISDGGGT-VCEVRKKVTFSRDK-FEIDG   96 (159)
T ss_pred             CCCcEEEEEeeeEEee-CceEEEEecCCCChHHHHHHHhhccceeEEEcCCCC-EEEEEEEEEEEeee-EEEcC
Confidence            4567899998776776 889999999999999999999999999999999999 889999987 8788 87654

>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins

Probab=96.97  E-value=0.0027  Score=51.70  Aligned_cols=72  Identities=14%  Similarity=0.119  Sum_probs=42.5

Q ss_pred             CCceeEEEEEE-EEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCC----eEEEEEeee-e-ecCeeeEEEe
Q 040753           14 ASKRESFTVWM-KSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGN----VLFTILRRV-R-VFGRLWRGYK   86 (198)
Q Consensus        14 ~~~~~~ltv~~-K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~----~Ll~i~~k~-l-~~~~~w~~~~   86 (198)
                      .+....|+|.. +.+++ ++...++|.+|++++.+..+.+++..+..+.++.+.    ++++|+++- + ..+. -.+|.
T Consensus        35 ~~G~~vf~V~g~~~~s~-~~~~~l~D~~G~~L~~i~~k~~~l~~~w~i~~~~~~~~~~~i~tvkk~~~~~~~~~-~~~f~  112 (187)
T PF04525_consen   35 ENGNVVFRVDGGKFFSI-GKKRTLMDASGNPLFTIRRKLFSLRPTWEIYRGGGSEGKKPIFTVKKKSMLQNKDS-FDVFL  112 (187)
T ss_dssp             TTS-EEEEEE--SCTTB-TTEEEEE-TTS-EEEEEE--------EEEEEETT---GGGEEEEEE-----------EEEEE
T ss_pred             CCCCEEEEEEEecccCC-CCEEEEECCCCCEEEEEEeeecccceEEEEEECCCCccCceEEEEEEecccCCCcc-eeEEE
Confidence            55678999988 66666 679999999999999999999999999999999998    599999993 3 4444 56666


Q ss_pred             C
Q 040753           87 G   87 (198)
Q Consensus        87 g   87 (198)
                      .
T Consensus       113 ~  113 (187)
T PF04525_consen  113 P  113 (187)
T ss_dssp             T
T ss_pred             e
Confidence            4

; PDB: 1ZXU_A 2Q4M_A.

>KOG0621 consensus Phospholipid scramblase [Cell wall/membrane/envelope biogenesis]

Probab=96.55  E-value=0.072  Score=46.82  Aligned_cols=157  Identities=13%  Similarity=0.054  Sum_probs=87.5

Q ss_pred             CCeEEEeCCCCEEEEEEcccC---------CCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEeCCCCCCCCC---Ccc
Q 040753           32 NGCTVFNENGEIVYRIDNYDN---------KGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYKGDNDGSNLN---KEK   98 (198)
Q Consensus        32 ~~ftV~D~~G~~vyrVdg~~~---------s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~g~~~~~~~~---~~~   98 (198)
                      +.|.|.|.+|+.+|.+-....         ..+=...++|.-|+++++++|+.. ....    +.+-...+...   ...
T Consensus        99 NRY~v~~~~g~~v~~~~E~S~~~~Rq~~g~~RpF~~~i~D~~g~eVl~~~R~~~c~~~~----c~~~~~~~~~v~~p~~~  174 (292)
T KOG0621|consen   99 NRYVVHDMYGQPLYYAMERSNVFARQYLGTHRPFAMRIMDNFGQEVLTCKRPFPCCSSA----CALCLAQEIEIQSPPMG  174 (292)
T ss_pred             cEEEEEcCCcChhHHHHhhchHHHHHhhccCCcceeEeecccCcEEEEEeccccccccc----cccccccEEEEEcCCCc
Confidence            899999999998885433221         124567888999999999999975 3321    11100000000   001


Q ss_pred             CeEEEeeeE-----EEEEcCCCceeeEEEEee--eccCCCCcCccceeEEEeCCCCeEEEEEEeeeecCCCceeeecceE
Q 040753           99 PSFEVTKKG-----EITLLSNNEASCYKLKLE--AASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVL  171 (198)
Q Consensus        99 ~~f~vk~~~-----~v~l~~~~~~~~~~v~~~--~~~~~G~~~~~~~~~I~~~~~g~~VAev~rk~~~~~~~~~~~~dty  171 (198)
                      .+-.+...+     .+.+.+......|.|++-  +..  +-+.+.. +.|..-++|.+|++|.|+|.....+-.-..|+|
T Consensus       175 ~lG~v~q~~~~~~~~f~i~~~~~~~v~~v~gp~~~~~--~~~~d~~-f~~~~~d~~~~vg~I~k~w~g~~rE~fTDad~f  251 (292)
T KOG0621|consen  175 LLGKVLQTWGCVNPNFHLWDRDGNLVFLVEGPRCCTF--ACCDDTV-FFPKTTDNGRIVGSISRKWAGLVREAFTDADTF  251 (292)
T ss_pred             eEEEEEEeeccccceEEEEcccceeEEEEEcCceeEE--EeecCcc-eeEEEcCCCeEEEEEeecccchhhhheecccee
Confidence            121121111     133332212234555510  000  1133344 444433368999999999996434454567888


Q ss_pred             EEEEeCCCCH---HHHHHHHHHhhccc
Q 040753          172 TLSVEPHVDR---SFIMALVTVYGLMN  195 (198)
Q Consensus       172 ~l~V~pgvD~---a~i~aLvv~lD~i~  195 (198)
                      .|..--..|.   ++++|-++-||.+.
T Consensus       252 ~v~FPldLdvk~kavllga~flID~~~  278 (292)
T KOG0621|consen  252 VVHFPLDLDVKLKALLLGSTFLIDYMS  278 (292)
T ss_pred             eEecCCcCCHHHHhhhhhheeeEEEEE
Confidence            8877666665   77888888888653

>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site

Probab=95.77  E-value=0.026  Score=46.82  Aligned_cols=85  Identities=18%  Similarity=0.094  Sum_probs=56.0

Q ss_pred             CceeEEEEEEEEeEEeC------CCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeee----ecCeeeEE
Q 040753           15 SKRESFTVWMKSLVMQG------NGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVR----VFGRLWRG   84 (198)
Q Consensus        15 ~~~~~ltv~~K~~~~sg------~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l----~~~~~w~~   84 (198)
                      ...+.+++.+ ...+..      ...+|.+.+|+.+-+|.....-++.++.|+|++|+++++|+....    .....|++
T Consensus        84 ~g~~vl~i~R-p~~c~~C~~~~~~~~~V~~p~g~~iG~I~q~~~~~~~~f~I~d~~~~~~~~I~gp~~~~~~~~~~~F~I  162 (221)
T PF03803_consen   84 YGREVLTIER-PFKCCSCCPCCLQEMEVESPPGNLIGSIRQPFSCCRPNFDIFDANGNPIFTIKGPCCCCSCCCDWEFEI  162 (221)
T ss_pred             CCCEEEEEEc-CCcceecccccceeEEEecCCCcEEEEEEEcCcccceEEEEEECCCceEEEEeCCcceeccccceeeee
Confidence            3456677654 344322      567788888888888888765568888888888888888887643    12233555


Q ss_pred             EeCCCCCCCCCCccCeEEEeeeEE
Q 040753           85 YKGDNDGSNLNKEKPSFEVTKKGE  108 (198)
Q Consensus        85 ~~g~~~~~~~~~~~~~f~vk~~~~  108 (198)
                      +..+        +..+-+|+|+|.
T Consensus       163 ~~~~--------~~~vg~I~k~w~  178 (221)
T PF03803_consen  163 KDPN--------GQEVGSITKKWS  178 (221)
T ss_pred             eccc--------CcEEEEEEEecC
Confidence            5532        256677777754

Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	5e-39

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A Length = 217

 Score =  132 bits (333), Expect = 5e-39
 Identities = 34/187 (18%), Positives = 76/187 (40%), Gaps = 12/187 (6%)

Query: 14  ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILR 73
           A       +  K + +      + + NG +++++        ++  L+D  G  + T+  
Sbjct: 34  APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLRE 93

Query: 74  RVRVFGRLWRGYKGDNDGSNLN----KEKPSFEVTKKGEITLLSNNEASCYKLKLEAASA 129
           ++      W+ ++G +          K     ++  K ++ L  N +      +++  S 
Sbjct: 94  KMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVK-GSW 152

Query: 130 TGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGSGVLLGDDVLTLSVEPHVDRSFIMALVT 189
             R+       +       +VA+  RK   +   V LG D  +++V P+VD +FI +LV 
Sbjct: 153 LERS-----CVVYAGESDAIVAQMHRKH--TVQSVFLGKDNFSVTVYPNVDYAFIASLVV 205

Query: 190 VYGLMNR 196
           +   +NR
Sbjct: 206 ILDDVNR 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	100.0
1zxu_A	217	AT5G01750 protein; PFAM PF01167, TULP, structural	97.5

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=100.00  E-value=4.9e-37  Score=254.79  Aligned_cols=169  Identities=20%  Similarity=0.355  Sum_probs=131.3

Q ss_pred             CCceeEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCCeEEEEEeeee-ecCeeeEEEeCCCCCC
Q 040753           14 ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGNVLFTILRRVR-VFGRLWRGYKGDNDGS   92 (198)
Q Consensus        14 ~~~~~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~~Ll~i~~k~l-~~~~~w~~~~g~~~~~   92 (198)
                      +.+|++|+||+|.+++++++|+|+|++|+++|+|+++.+++++++.|+|++|++|++|++|.+ ++++ |++|.++..+ 
T Consensus        34 ~~~~~~l~vkqk~~~~~~~~f~V~D~~G~~vf~V~~~~~~~~~~~~l~D~~G~~l~~i~rk~~~~~~~-~~v~~~~~~~-  111 (217)
T 1zxu_A           34 APYPIDMAIVRKMMSLTDGNFVITDVNGNLLFKVKEPVFGLHDKRVLLDGSGTPVVTLREKMVSMHDR-WQVFRGGSTD-  111 (217)
T ss_dssp             CSSCEEEEEECC-----CCCEEEEETTSCEEEEEECSSTTCCSEEEEECTTSCEEEEEEC------CE-EEEEETTCCC-
T ss_pred             CCCCcEEEEEEEEeEeeCCCEEEEeCCCCEEEEEEccccCCCCEEEEECCCCCEEEEEEccccccCcE-EEEEcCCCCC-
Confidence            567999999999999999999999999999999999999999999999999999999999998 9999 9999987331 


Q ss_pred             CCCCccCeEEEeee--------EEEEEcCCC--ceeeEEEEeeeccCCCCcCccceeEEEeCCCCeEEEEEEeeeecCCC
Q 040753           93 NLNKEKPSFEVTKK--------GEITLLSNN--EASCYKLKLEAASATGRTKSAALFKIIDCRRGVVVAEGMRKQSRSGS  162 (198)
Q Consensus        93 ~~~~~~~~f~vk~~--------~~v~l~~~~--~~~~~~v~~~~~~~~G~~~~~~~~~I~~~~~g~~VAev~rk~~~~~~  162 (198)
                         .++++|+||++        ++|+.+++.  +.++|+|+       |++++++ |+|+++++|++||+|+|||..  .
T Consensus       112 ---~~~~i~~vrk~~~~~~~~~~~V~~~~~~~~~~~~~~I~-------G~~~~~~-f~I~~~~~~~~Va~I~kk~~~--~  178 (217)
T 1zxu_A          112 ---QRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVK-------GSWLERS-CVVYAGESDAIVAQMHRKHTV--Q  178 (217)
T ss_dssp             ---GGGEEEEEEC-------CCEEEEETTCCC-CCCSEEEE-------SCTTTTC-CEEEETTTCCEEEEEEEC------
T ss_pred             ---CCcEEEEEEEeccccCCCeEEEEECCCCCCCceEEEEE-------EeEeCCE-EEEEECCCCEEEEEEEeeeec--c
Confidence               12467777665        456665432  35789999       9999999 999997337999999999765  7


Q ss_pred             ceeeecceEEEEEeCCCCHHHHHHHHHHhhccccc
Q 040753          163 GVLLGDDVLTLSVEPHVDRSFIMALVTVYGLMNRL  197 (198)
Q Consensus       163 ~~~~~~dty~l~V~pgvD~a~i~aLvv~lD~i~~~  197 (198)
                      +++++.|+|.|+|.|++|.+||||+|++||+++++
T Consensus       179 ~~~~~~D~y~l~V~p~~D~aliialvv~iD~~~~~  213 (217)
T 1zxu_A          179 SVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRE  213 (217)
T ss_dssp             ----CBCSEEEEECTTSBHHHHHHHHHHHHHHHC-
T ss_pred             ccccCCcEEEEEECCCCCHHHHHHHHHHHHHhhhh
Confidence            88899999999999999999999999999999764

>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A

Probab=97.50  E-value=0.00044  Score=56.33  Aligned_cols=86  Identities=13%  Similarity=0.147  Sum_probs=58.8

Q ss_pred             CCceeEEEEEEEEeEEeCCCeEEEeCCCCEEEEEEcccCCCCCeEEEEcCCCC----eEEEEEeee-e-ecCeeeEEEeC
Q 040753           14 ASKRESFTVWMKSLVMQGNGCTVFNENGEIVYRIDNYDNKGSNEVYLMDLRGN----VLFTILRRV-R-VFGRLWRGYKG   87 (198)
Q Consensus        14 ~~~~~~ltv~~K~~~~sg~~ftV~D~~G~~vyrVdg~~~s~~~~~~l~D~~G~----~Ll~i~~k~-l-~~~~~w~~~~g   87 (198)
                      ...+..|.|..+.+++ ++.+.|+|.+|++++++..+.+++..+..+.++.+.    +|++|+++. + +.+. |+++.+
T Consensus        59 ~~G~~vf~V~~~~~~~-~~~~~l~D~~G~~l~~i~rk~~~~~~~~~v~~~~~~~~~~~i~~vrk~~~~~~~~~-~~V~~~  136 (217)
T 1zxu_A           59 VNGNLLFKVKEPVFGL-HDKRVLLDGSGTPVVTLREKMVSMHDRWQVFRGGSTDQRDLLYTVKRSSMLQLKTK-LDVFLG  136 (217)
T ss_dssp             TTSCEEEEEECSSTTC-CSEEEEECTTSCEEEEEEC------CEEEEEETTCCCGGGEEEEEEC-------CC-EEEEET
T ss_pred             CCCCEEEEEEccccCC-CCEEEEECCCCCEEEEEEccccccCcEEEEEcCCCCCCCcEEEEEEEeccccCCCe-EEEEEC
Confidence            4567889998876555 578999999999999999999899999999998765    799999884 4 7788 999987


Q ss_pred             CCCCCCCCCccCeEEEee
Q 040753           88 DNDGSNLNKEKPSFEVTK  105 (198)
Q Consensus        88 ~~~~~~~~~~~~~f~vk~  105 (198)
                      +..+    .+.+.|+|+-
T Consensus       137 ~~~~----~~~~~~~I~G  150 (217)
T 1zxu_A          137 HNKD----EKRCDFRVKG  150 (217)
T ss_dssp             TCCC-----CCCSEEEES
T ss_pred             CCCC----CCceEEEEEE
Confidence            5321    1235566653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	198
d2q4ma1	189	d.23.1.2 (A:24-212) Hypothetical protein At5g01750	5e-35

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	100.0
d2q4ma1	189	Hypothetical protein At5g01750 {Thale cress (Arabi	97.37