Citrus Sinensis ID: 040757

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-----
Protein Sequence
MEALLASYGDSYSDSDTERGNPSNSGINSSSSQPETTNLPLPPPPLSLVNPPNSLGKYNISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSGE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccccEEEEcccccccccccHHHHHHHHHHHHHccccEEEEcccEEEEEccccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEEEcEEEEEEcccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccHcccccccccccccccccccccccccHHHHHcccccccccccccHHccccEEEEcccccEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHHHcHHHcccccccccHHHccccccccccccccccEEEccccEEEEHccHHHHHHHHHHHHHccccEEEEEccEEEEEcccccEEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcEEEEEEcccEEEEEEEccc
Coil and Loop (DISEMBL)
MEALLAsygdsysdsdtergnpsnsginssssqpettnlplpppplslvnppnslgkynissINGSLSILIYAHQLFAvlptkgsidhhlptvliplaPKKELAQFLKRVSsilpgiyvvdvdvpftslrkddselEQVAFGREFHIslgrtvpirVHQIDSIVAMLRQRLQSQRRYWIDFskweafvnddrtrtFLSLEVITGGLLEITKQIQVVNEVYRlhnlpefykdprphiSLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKhffsckfggihckigkktYKICKFSGE
Flexible Loop (DISEMBL)
MEALLASygdsysdsdtergNPSNSGINSSSSQPETTNLPLPPPPLSLVNPPNSLGKYNISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVssilpgiyVVDVDVPFTSLRKDDSELEQVAFGREfhislgrtvpirVHQIDSIVAMLRQRLQSQRRYWIDFSkweafvnddrtrTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFfsckfggihckigkKTYKICKFSGE
Low Complexity Region (SEG)
MEALLASYGDSYSDSDTERgnpsnsginssssQPETTnlplpppplslvnppnslGKYnissingslsiliYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSGE
Disordered region (IsUnstruct)
*******************************************************GKYNISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKF***
Disordered Region (DISOPRED)
**ALLAS******************************************************************HQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRK*******VAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSG*
Disordered Region (DISEMBL)
**************************************LPLPPPPLSLVNPPNSLGKYNISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSGE
Disordered Region (DISPRO)
**************************************LPLPPPPLSLVNPPN*LGKYNISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFS**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEALLASYGDSYSDSDTERGNPSNSGINSSSSQPETTNLPLPPPPLSLVNPPNSLGKYNISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	295	2.2.26 [Sep-21-2011]
Q6DEF6	276	Putative U6 snRNA phospho	yes	no	0.471	0.503	0.364	5e-17
Q91W78	267	Putative U6 snRNA phospho	yes	no	0.864	0.955	0.259	1e-16
Q5I0I5	267	Putative U6 snRNA phospho	yes	no	0.491	0.543	0.301	3e-15
Q7ZYI9	250	Putative U6 snRNA phospho	N/A	no	0.586	0.692	0.311	9e-15
Q0II50	265	Putative U6 snRNA phospho	yes	no	0.861	0.958	0.246	5e-14
Q9BQ65	265	Putative U6 snRNA phospho	yes	no	0.481	0.535	0.299	1e-13
Q54W16	275	Putative U6 snRNA phospho	yes	no	0.332	0.356	0.373	8e-13
Q9VHB3	258	Putative U6 snRNA phospho	yes	no	0.566	0.647	0.256	2e-10

>sp|Q6DEF6|USB1_DANRE Putative U6 snRNA phosphodiesterase OS=Danio rerio GN=usb1 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 83/148 (56%), Gaps = 9/148 (6%)

Query: 144 EFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVIT 203
           EFH+SL +TV +R H I   V  +R  L   ++++    K + + N ++TRTFL +EV T
Sbjct: 129 EFHLSLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEKTRTFLGMEVST 188

Query: 204 GG--LLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRL- 260
           G   LLE++K   +V+E  +  NL  FY+DP  HISLAW +GD +  LK+  + E++ L 
Sbjct: 189 GTPHLLELSK---IVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKKACLLELQGLI 245

Query: 261 -SVESSLHKHFFSCKFGGIHCKIGKKTY 287
            + E        +C    + CK G K +
Sbjct: 246 DAHEDGPFHARLNC--NELRCKTGNKVF 271

Danio rerio (taxid: 7955)

>sp|Q91W78|USB1_MOUSE Putative U6 snRNA phosphodiesterase OS=Mus musculus GN=Usb1 PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 133/293 (45%), Gaps = 38/293 (12%)

Query: 3   ALLASYGDSYSDSDTE-----RGNPSNSGINSSSSQP-ETTNLPLPPPPLSLVNPPNSLG 56
           A L  Y  S S+ + E     R  P  +G +     P  +  LP+P   LS+  P    G
Sbjct: 4   APLVGYSSSGSEDEAEAVAAGRSKP-GTGFHRCGQNPVPSEKLPVPDSVLSMF-PSTEEG 61

Query: 57  KYNISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPG 116
             + S+ +G   I  + H+       +G+   H   + IP   K++    L    ++LP 
Sbjct: 62  PEDDSAKHGG-RIRTFPHE-------RGNWATH---IYIPYEAKEDFRDLL---DALLPR 107

Query: 117 IYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRR 176
             +    VP            ++    EFH+SL ++V +R H I   V +L+ R+ S +R
Sbjct: 108 AQMF---VP------------RLVLMEEFHVSLSQSVVLRHHWILPFVQVLKDRMASFQR 152

Query: 177 YWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHI 236
           ++   ++ + + N ++TRTF+ LEV + G  +    +  V+   +  +L  FY+DP  HI
Sbjct: 153 FFFTANRVKIYTNQEKTRTFIGLEV-SSGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHI 211

Query: 237 SLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKI 289
           SLAW +GD S  L+   ++E++ +  E    +         + CK G K + +
Sbjct: 212 SLAWCVGDASLQLEGQCLQELQEIVDEFEDSEMLLRVLANQVRCKSGNKFFSM 264

Mus musculus (taxid: 10090)

>sp|Q5I0I5|USB1_RAT Putative U6 snRNA phosphodiesterase OS=Rattus norvegicus GN=Usb1 PE=2 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/146 (30%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 144 EFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVIT 203
           EFH+SL ++V +R H I   V +L+ R+ S +R++   ++ + + N ++TRTF+ LEV +
Sbjct: 120 EFHLSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEV-S 178

Query: 204 GGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVE 263
            G  +    +  V+ V +  +L  FY+DP  H+SLAW +GD    L+    +E++ +  E
Sbjct: 179 SGHAQFLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQCQQELQEIVDE 238

Query: 264 SSLHKHFFSCKFGGIHCKIGKKTYKI 289
               +         + CK G K + +
Sbjct: 239 FEDSEMLLRVLAEQVRCKSGNKFFSM 264

Rattus norvegicus (taxid: 10116)

>sp|Q7ZYI9|USB1_XENLA Putative U6 snRNA phosphodiesterase OS=Xenopus laevis GN=usb1 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 96/202 (47%), Gaps = 29/202 (14%)

Query: 93  VLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRT 152
           V IP  P++E    L  + S+       +  V  T +              EFHIS  +T
Sbjct: 70  VYIPFQPQEEFLDLLDELVSV-----AAENGVLLTKMS-------------EFHISQSQT 111

Query: 153 VPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQ 212
           V +R H I+  V  L+ +L    R+     + + + N ++TRTFL LEV  G    +   
Sbjct: 112 VVLRHHWINPFVESLKDKLHCMYRFLCIAERIKVYTNQEKTRTFLGLEVSVG----MEHL 167

Query: 213 IQVVNEVYR---LHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRL--SVESSLH 267
           ++VV+EV R     NL  FY++P  H+SLAW +GD    LK   + E++++    E S  
Sbjct: 168 LEVVSEVDRSLQEFNLQTFYQEPSFHVSLAWCVGDKYEKLKGSCLLELQKVIDRFEDSDT 227

Query: 268 KHFFSCKFGGIHCKIGKKTYKI 289
              F+ +   I CK G KT+ I
Sbjct: 228 LTRFNAE--EIRCKAGNKTFCI 247

Xenopus laevis (taxid: 8355)

>sp|Q0II50|USB1_BOVIN Putative U6 snRNA phosphodiesterase OS=Bos taurus GN=USB1 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 124/292 (42%), Gaps = 38/292 (13%)

Query: 3   ALLASYGDSYSDSDTERG---NPSNSGINSSSSQPETTNLPLPPPPLSLVNPPNSLGKYN 59
           A L  Y  S S+ + E G    P   G +   S      LP+P   L +  P    G  +
Sbjct: 4   APLVGYSSSGSEDEAEAGARVRPGAEGRSRGQSPLPGQRLPVPDSVLHMF-PSTEEGPVD 62

Query: 60  ISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYV 119
            S+ +G   +  + H+       +G+   H   V IP   ++E    L  +         
Sbjct: 63  DSAKHGG-RVRTFPHE-------RGNWATH---VYIPYEAREEFLDLLDAL--------- 102

Query: 120 VDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWI 179
                    L    + + ++     FH+SL ++V +R H I   V  L+ R+ S  R+  
Sbjct: 103 ---------LCHAQTYVPRLVRMEAFHLSLSQSVVLRHHWILPFVQALKDRVASFHRFCF 153

Query: 180 DFSKWEAFVNDDRTRTFLSLEVITG--GLLEITKQIQVVNEVYRLHNLPEFYKDPRPHIS 237
              + + + N ++TRTF+ LEV +G    L++  ++  V E +   +L  FY+DP  HIS
Sbjct: 154 TTDQVKIYTNQEKTRTFVGLEVTSGHAHFLDLVAEVDRVMEEF---DLSTFYQDPSFHIS 210

Query: 238 LAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKI 289
           LAW +GD    ++   ++E++ +  E    +         I CK G K + +
Sbjct: 211 LAWCVGDARLQMEGPCLQELQGIVDEFEDSEMLLRAYAEQIRCKSGNKFFSM 262

Bos taurus (taxid: 9913)

>sp|Q9BQ65|USB1_HUMAN Putative U6 snRNA phosphodiesterase OS=Homo sapiens GN=USB1 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 5/147 (3%)

Query: 145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITG 204
           FH+SL ++V +R H I   V  L+ R+ S  R++   ++ + + N ++TRTF+ LEV +G
Sbjct: 119 FHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSG 178

Query: 205 --GLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSV 262
               L++  ++  V E +   NL  FY+DP  H+SLAW +GD    L+   ++E++ +  
Sbjct: 179 HAQFLDLVSEVDRVMEEF---NLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVD 235

Query: 263 ESSLHKHFFSCKFGGIHCKIGKKTYKI 289
                +         + CK G K + +
Sbjct: 236 GFEDAEVLLRVHTEQVRCKSGNKFFSM 262

Homo sapiens (taxid: 9606)

>sp|Q54W16|USB1_DICDI Putative U6 snRNA phosphodiesterase OS=Dictyostelium discoideum GN=DDB_G0279967 PE=3 SV=1

 Score = 74.7 bits (182), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 1/99 (1%)

Query: 145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSK-WEAFVNDDRTRTFLSLEVIT 203
           FHIS+ RT PIR H I++    L++ L++QR   I  SK    F+ND+++R FLS+ +  
Sbjct: 121 FHISISRTFPIREHHIETFTQELKKTLKNQRSIDIQLSKECCVFINDNQSRIFLSIPINQ 180

Query: 204 GGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLL 242
                I K I+ ++    L   P++Y +P PH+S++W L
Sbjct: 181 SFKSNILKLIERIDSCLSLFKFPKYYDNPEPHLSISWSL 219

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VHB3|USB1_DROME Putative U6 snRNA phosphodiesterase OS=Drosophila melanogaster GN=CG16790 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 16/183 (8%)

Query: 116 GIYVVDVDVPFTSLRKDDSELEQVAFGR-----------EFHISLGRTVPIRVHQIDSIV 164
           G +   V VP T+      E +  A  R             H+SL RTV ++ HQID   
Sbjct: 76  GNWATYVYVPATACVDQLEEFQTEAIARLEPHLELQPNESLHLSLSRTVVLQYHQIDEFS 135

Query: 165 AMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHN 224
             L+  L S   +         + N++RTRTF++  +    + ++T  +Q +++V   + 
Sbjct: 136 RSLQSALNSSAGFAATLQGLRIYTNEERTRTFIAAPLDAAFVEKMTAILQPIDQVMLDYR 195

Query: 225 LPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGK 284
           L +FY     H+SL W +GD  + L   + E  + L  +  L           +H K G 
Sbjct: 196 LQQFYDPASFHVSLLWCVGDQETLLNEKLTELKELLDDQDKL-----CLAVNEVHLKCGN 250

Query: 285 KTY 287
           K +
Sbjct: 251 KDF 253

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
225454880	283	PREDICTED: UPF0406 protein C16orf57 homo	0.949	0.989	0.591	5e-85
224136392	290	predicted protein [Populus trichocarpa]	0.979	0.996	0.620	7e-83
255539937	288	conserved hypothetical protein [Ricinus	0.962	0.986	0.577	7e-82
449451850	289	PREDICTED: putative U6 snRNA phosphodies	0.972	0.993	0.555	8e-78
449488623	289	PREDICTED: putative U6 snRNA phosphodies	0.972	0.993	0.555	8e-78
356495919	279	PREDICTED: UPF0406 protein C16orf57-like	0.654	0.691	0.706	3e-75
255648012	279	unknown [Glycine max]	0.661	0.698	0.700	4e-75
297795921	260	hypothetical protein ARALYDRAFT_495185 [	0.684	0.776	0.625	9e-70
18423246	285	uncharacterized protein [Arabidopsis tha	0.684	0.708	0.610	2e-68
326504100	283	predicted protein [Hordeum vulgare subsp	0.671	0.699	0.59	9e-64

>gi|225454880|ref|XP_002278790.1| PREDICTED: UPF0406 protein C16orf57 homolog [Vitis vinifera] gi|147791224|emb|CAN70131.1| hypothetical protein VITISV_030399 [Vitis vinifera] gi|297737378|emb|CBI26579.3| unnamed protein product [Vitis vinifera]

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 174/294 (59%), Positives = 214/294 (72%), Gaps = 14/294 (4%)

Query: 1   MEALLASYGDSYSDSDTERGNPSNSGINSSSSQPETTNLPLPPPPLSLVNPPNSLGKYNI 60
           M+AL ASY +S SDS+++   P  +  N  +S P           L+L++PPNSLG+ N 
Sbjct: 1   MDALRASYANSCSDSESDSDTPRPTNENHQASGPLPPPP------LALLSPPNSLGELNY 54

Query: 61  SSINGSLSILIYAHQLFAVLPTKGSIDHHLPT-VLIPLAPKKELAQFLKRVSSILPGIYV 119
           S    S  +  + H        +G+   H+   V IP +PKKEL Q+LK+V S++PG++V
Sbjct: 55  SQTAQSGRVRSFPH-------VEGNYALHVFIPVYIPSSPKKELVQYLKKVMSLVPGLHV 107

Query: 120 VDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWI 179
           VDVD+P   L KDD++LEQVA GREFHISLGRTVPIRVHQIDSIV MLRQ+LQ QRRYWI
Sbjct: 108 VDVDIPLNILCKDDNKLEQVALGREFHISLGRTVPIRVHQIDSIVTMLRQKLQFQRRYWI 167

Query: 180 DFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLA 239
           DF+KWE FVNDD+TR+FLS+EVI GGL EIT+QIQ VNEVYRLHNLPEFY+DPRPHISL 
Sbjct: 168 DFNKWEVFVNDDQTRSFLSVEVIAGGLAEITRQIQAVNEVYRLHNLPEFYEDPRPHISLV 227

Query: 240 WLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFS 293
           W LG++S SLKR V E  + ++V  S+ K  F+CKF GI CKIG KTYKICKFS
Sbjct: 228 WALGNISDSLKRAVEEMRRHINVGGSVQKRIFTCKFNGIECKIGNKTYKICKFS 281

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136392|ref|XP_002322318.1| predicted protein [Populus trichocarpa] gi|222869314|gb|EEF06445.1| predicted protein [Populus trichocarpa]

 Score =  313 bits (801), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 183/295 (62%), Positives = 218/295 (73%), Gaps = 6/295 (2%)

Query: 1   MEALLASYGDSYSDSDTERGNPSNSGINSSSSQPETTNLPLPPPPLSLVNPPNSLGKYNI 60
           ME L ASYGD+ SDSD++  +P  +      S P+   + LPPPPL+L+ PPN LG  + 
Sbjct: 1   MEILRASYGDASSDSDSDSSSPPTTKSVPPVSNPKAEAIALPPPPLALLTPPNPLGALD- 59

Query: 61  SSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGIYVV 120
           S +NG  S +    + F  +    ++  ++P V IP A KKE+ QFL R+S ++PG++VV
Sbjct: 60  SMLNGQSSRI----RSFPHVQGNYALHVYIP-VNIPPALKKEVVQFLNRISLVVPGLHVV 114

Query: 121 DVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWID 180
           D DVP   L KDD +LEQVA GR+FHISLGRTVPIRVHQIDS+VAMLRQ+LQ Q+ YWID
Sbjct: 115 DADVPLDILCKDDHKLEQVALGRDFHISLGRTVPIRVHQIDSVVAMLRQKLQFQKGYWID 174

Query: 181 FSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAW 240
           F+KWE FVNDD+TRTFLSLEV+TGGL EITKQIQ VN+VY+LHNLPEFYKDPRPHISLAW
Sbjct: 175 FNKWEVFVNDDKTRTFLSLEVVTGGLAEITKQIQSVNDVYKLHNLPEFYKDPRPHISLAW 234

Query: 241 LLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSGE 295
            LGDVS  LKR VV EMKR S   S+ K  FSCKF GI C IGKKTYKI KF  E
Sbjct: 235 ALGDVSDVLKREVVNEMKRSSAGGSILKRVFSCKFSGIECHIGKKTYKISKFLDE 289

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539937|ref|XP_002511033.1| conserved hypothetical protein [Ricinus communis] gi|223550148|gb|EEF51635.1| conserved hypothetical protein [Ricinus communis]

 Score =  310 bits (793), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 172/298 (57%), Positives = 214/298 (71%), Gaps = 14/298 (4%)

Query: 1   MEALLASYGDSYSDSDTERGNPSNSG---INSSSSQPETTNLPLPPPPLSLVNPPNSLGK 57
           MEAL+ASYGD+ SDSD++   P+ +       S+++PE T LP PP  L +    NS+  
Sbjct: 1   MEALIASYGDASSDSDSDTALPTATAASITTISNTKPEITPLPPPPVSLLIPP--NSIDY 58

Query: 58  YNISSINGSLSILIYAHQLFAVLPTKGSIDHHLPTVLIPLAPKKELAQFLKRVSSILPGI 117
           +     +   S        FA +    ++  ++P V IP A KKE+  FLK++SS++PG+
Sbjct: 59  FQAGQPSRMRS--------FAHVEGNYALHVYIP-VYIPPASKKEILSFLKKISSLVPGL 109

Query: 118 YVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRY 177
           +VVDVD+P   L KDD +LE VA GREFHISLGRTVPIRVHQIDS+V+MLRQRLQ + RY
Sbjct: 110 HVVDVDIPLDILCKDDQKLEHVALGREFHISLGRTVPIRVHQIDSVVSMLRQRLQFKNRY 169

Query: 178 WIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHIS 237
           WIDFSKWE FVNDD+TR+FLSLEV+ GGL EITKQI+ VN+VY+LHNLPEFYKDPRPHIS
Sbjct: 170 WIDFSKWEVFVNDDKTRSFLSLEVVNGGLAEITKQIESVNQVYKLHNLPEFYKDPRPHIS 229

Query: 238 LAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSGE 295
           LAW LGD+S SLKRVV EE+K+ S+   + K  F+CK  GI CKIG KTY  CKF  E
Sbjct: 230 LAWALGDISDSLKRVVEEEIKKSSIAGLVQKRIFTCKCRGIECKIGNKTYNFCKFLDE 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451850|ref|XP_004143673.1| PREDICTED: putative U6 snRNA phosphodiesterase-like [Cucumis sativus]

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 165/297 (55%), Positives = 211/297 (71%), Gaps = 10/297 (3%)

Query: 1   MEALLASYGDSYSDSDTERGNPSNSGINSSSSQPET-TNLPLPPPPLSLVNPPNSLGKYN 59
           M+AL ASYG S SD + +  +P ++  ++     ET T LPLPPPPLSL+N PNS    +
Sbjct: 1   MDALRASYGGSSSDEEVDTVSPPSASTSAPQFLDETVTFLPLPPPPLSLLNFPNSTCVLD 60

Query: 60  ISSINGSLSILIYAHQLFAVLPTKGSIDHHLPT-VLIPLAPKKELAQFLKRVSSILPGIY 118
              I+ +  +  + H        +G+   H+   V +P   +KE+A F+K++SS++P ++
Sbjct: 61  DLPIDQATRVRSFPH-------VQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALH 113

Query: 119 VVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYW 178
           +VD+D+P   L KDD +LEQ A+ REFHISL RTVPIRVHQIDSIV MLRQ+LQS RRYW
Sbjct: 114 LVDIDIPLDVLCKDDQKLEQ-AWAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYW 172

Query: 179 IDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISL 238
           IDFSKWE FVNDD +RTFLS+E+ITGGL+EI KQIQVVNEVY+LHNLPEFYK+ RPHIS+
Sbjct: 173 IDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISV 232

Query: 239 AWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSGE 295
           AW LGDVS    + V  E+KR +V+    +  F+ KF GI CKIGKK YKICKF  E
Sbjct: 233 AWALGDVSQLSSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFPDE 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449488623|ref|XP_004158117.1| PREDICTED: putative U6 snRNA phosphodiesterase-like [Cucumis sativus]

 Score =  296 bits (757), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 165/297 (55%), Positives = 210/297 (70%), Gaps = 10/297 (3%)

Query: 1   MEALLASYGDSYSDSDTERGNPSNSGINSSSSQPET-TNLPLPPPPLSLVNPPNSLGKYN 59
           M+AL ASYG S SD + +  +P ++  ++     ET T LPLPPPPLSL+N PNS    +
Sbjct: 1   MDALRASYGGSSSDEEVDTVSPPSASTSAPQFLDETVTFLPLPPPPLSLLNFPNSTCVLD 60

Query: 60  ISSINGSLSILIYAHQLFAVLPTKGSIDHHLPT-VLIPLAPKKELAQFLKRVSSILPGIY 118
              I+ +  +  + H        +G+   H+   V +P   +KE+A F+K++SS++P ++
Sbjct: 61  DLPIDQATRVRSFPH-------VQGNYALHVYIPVYVPTNARKEVALFMKKISSLVPALH 113

Query: 119 VVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYW 178
           +VD+D+P   L KDD +LEQ A  REFHISL RTVPIRVHQIDSIV MLRQ+LQS RRYW
Sbjct: 114 LVDIDIPLDVLCKDDQKLEQ-ALAREFHISLSRTVPIRVHQIDSIVTMLRQKLQSPRRYW 172

Query: 179 IDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISL 238
           IDFSKWE FVNDD +RTFLS+E+ITGGL+EI KQIQVVNEVY+LHNLPEFYK+ RPHIS+
Sbjct: 173 IDFSKWETFVNDDLSRTFLSMEIITGGLMEIRKQIQVVNEVYKLHNLPEFYKEARPHISV 232

Query: 239 AWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICKFSGE 295
           AW LGDVS    + V  E+KR +V+    +  F+ KF GI CKIGKK YKICKF  E
Sbjct: 233 AWALGDVSQLSSQAVHNELKRSAVKEPFKRCIFTTKFNGIECKIGKKMYKICKFPDE 289

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495919|ref|XP_003516818.1| PREDICTED: UPF0406 protein C16orf57-like isoform 1 [Glycine max] gi|356495921|ref|XP_003516819.1| PREDICTED: UPF0406 protein C16orf57-like isoform 2 [Glycine max]

 Score =  288 bits (736), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 137/194 (70%), Positives = 158/194 (81%), Gaps = 1/194 (0%)

Query: 100 KKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQ 159
           KKEL  FLK++SS  P + VVDVDVP   L ++D +LEQV  GREFHISLGRTVPIRVHQ
Sbjct: 84  KKELVAFLKKISSREPRLNVVDVDVPLNILCQNDEKLEQVTLGREFHISLGRTVPIRVHQ 143

Query: 160 IDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEV 219
           IDS+V+MLRQ+LQ Q +YWIDF+KWE FVNDD TR+FLS EV+ GGL+EITKQI+VVN +
Sbjct: 144 IDSVVSMLRQKLQIQHQYWIDFNKWEVFVNDDHTRSFLSAEVVQGGLVEITKQIEVVNAI 203

Query: 220 YRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIH 279
           YRLHNLPEFYKDPRPHISLAW LGD++ SLK++V EEMK  +V  SL K  FSCKF  I 
Sbjct: 204 YRLHNLPEFYKDPRPHISLAWALGDIAHSLKKIVDEEMK-CAVGKSLKKCIFSCKFKSIE 262

Query: 280 CKIGKKTYKICKFS 293
           CKIGKK Y ICK S
Sbjct: 263 CKIGKKAYTICKIS 276

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648012|gb|ACU24462.1| unknown [Glycine max]

 Score =  287 bits (734), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 138/197 (70%), Positives = 160/197 (81%), Gaps = 2/197 (1%)

Query: 100 KKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQ 159
           KKEL  FLK++SS  P + VVDVDVP   L ++D +LEQV  GREFHISLGRTVPIRVHQ
Sbjct: 84  KKELVAFLKKISSREPRLNVVDVDVPLNILCQNDEKLEQVTLGREFHISLGRTVPIRVHQ 143

Query: 160 IDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEV 219
           IDS+V+MLRQ+LQ Q +YWIDF+KWE FVNDD TR+FLS EV+ GGL+EITKQI+VVN +
Sbjct: 144 IDSVVSMLRQKLQIQHQYWIDFNKWEVFVNDDHTRSFLSAEVVQGGLVEITKQIEVVNAI 203

Query: 220 YRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFSCKFGGIH 279
           YRLHNLPEFYKDPRPHISLAW LGD++ SLK++V EEMK  +V  SL K  FSCKF  I 
Sbjct: 204 YRLHNLPEFYKDPRPHISLAWALGDIAHSLKKIVDEEMK-CAVGKSLKKCIFSCKFKSIE 262

Query: 280 CKIGKKTYKICK-FSGE 295
           CKIGKK Y ICK F G+
Sbjct: 263 CKIGKKAYTICKIFDGQ 279

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795921|ref|XP_002865845.1| hypothetical protein ARALYDRAFT_495185 [Arabidopsis lyrata subsp. lyrata] gi|297311680|gb|EFH42104.1| hypothetical protein ARALYDRAFT_495185 [Arabidopsis lyrata subsp. lyrata]

 Score =  269 bits (688), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 127/203 (62%), Positives = 158/203 (77%), Gaps = 1/203 (0%)

Query: 93  VLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRT 152
           V IP  PKKE+  FLKRV+S++P +++V+ DVP + L KDD + E+ A GREFHISLGR+
Sbjct: 59  VSIPPLPKKEIVCFLKRVASVVPHLHLVEADVPLSILCKDDQKFER-ALGREFHISLGRS 117

Query: 153 VPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQ 212
           VP+RVHQI+S+V+MLRQ+LQ Q+RY IDF+KWE FVNDD TR+FLSLE+ T GL EI+KQ
Sbjct: 118 VPLRVHQINSVVSMLRQKLQLQKRYAIDFNKWEVFVNDDCTRSFLSLEITTSGLSEISKQ 177

Query: 213 IQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFS 272
           I  VNEVY+LHNLPEFYKDPRPHISL W LGD+ +SLK  V  E+++L     +    F+
Sbjct: 178 IDAVNEVYKLHNLPEFYKDPRPHISLVWALGDIRTSLKGAVDAELRKLRAGGCVQNRIFT 237

Query: 273 CKFGGIHCKIGKKTYKICKFSGE 295
            KFGGI CKIG KT+KICK   E
Sbjct: 238 SKFGGIECKIGNKTHKICKLPDE 260

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18423246|ref|NP_568753.1| uncharacterized protein [Arabidopsis thaliana] gi|8843853|dbj|BAA97379.1| unnamed protein product [Arabidopsis thaliana] gi|21617972|gb|AAM67022.1| unknown [Arabidopsis thaliana] gi|28393839|gb|AAO42327.1| unknown protein [Arabidopsis thaliana] gi|28973371|gb|AAO64010.1| unknown protein [Arabidopsis thaliana] gi|332008663|gb|AED96046.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  265 bits (677), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/203 (61%), Positives = 156/203 (76%), Gaps = 1/203 (0%)

Query: 93  VLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRT 152
           V IP  PKKE+  FLK+V+S++P +++V+ DVP + L KDD + E+ A GREFHISLGR 
Sbjct: 84  VCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSILCKDDQKFER-ALGREFHISLGRN 142

Query: 153 VPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQ 212
           VP+RVHQI+S+++MLRQ+LQ Q+RY IDF+KWE FVNDD TR+FLSLE+ T GL EI+KQ
Sbjct: 143 VPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITTSGLSEISKQ 202

Query: 213 IQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHFFS 272
           I  VNEVY+LHNLPEFYKDPRPHISL W LGD+ +SLK  V  E+++L     +    F+
Sbjct: 203 IDAVNEVYKLHNLPEFYKDPRPHISLVWALGDIRTSLKGAVDVELRKLRAGGCVQNRIFT 262

Query: 273 CKFGGIHCKIGKKTYKICKFSGE 295
            KF GI CKIG KT+KICK   E
Sbjct: 263 SKFCGIECKIGNKTHKICKLPDE 285

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326504100|dbj|BAK02836.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  249 bits (636), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 118/200 (59%), Positives = 151/200 (75%), Gaps = 2/200 (1%)

Query: 93  VLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRT 152
           V+IP   +K L   ++RV+S++P +Y VD D   + L KD+ +LE+V  GREFH+SLGRT
Sbjct: 82  VVIPFNARKHLTLVMRRVASLVPDLYAVDADYALSELCKDEQKLEKVLLGREFHVSLGRT 141

Query: 153 VPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQ 212
           V I+VHQIDS+VAMLRQ+ QSQ+RYW+D +KWE FVNDD TR+FLSLEV   GL EI+KQ
Sbjct: 142 VGIQVHQIDSLVAMLRQKFQSQQRYWMDLNKWEHFVNDDSTRSFLSLEVTRTGLPEISKQ 201

Query: 213 IQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKHF-F 271
           I +V+EVYRLH LPEFYK+PRPHISLAW LGDVSS LK+   +E+++     +L K++  
Sbjct: 202 IHMVDEVYRLHGLPEFYKNPRPHISLAWALGDVSSKLKQ-ATKEIEKFENSINLSKNYNL 260

Query: 272 SCKFGGIHCKIGKKTYKICK 291
            C F  I CK+GKK Y ICK
Sbjct: 261 RCNFSRILCKVGKKVYDICK 280

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	295
TAIR|locus:2176162	285	AT5G51170 "AT5G51170" [Arabido	0.694	0.719	0.603	6.8e-71
UNIPROTKB|F1NE74	256	USB1 "Uncharacterized protein"	0.477	0.550	0.349	1.9e-19
ZFIN|ZDB-GENE-040801-197	276	usb1 "U6 snRNA biogenesis 1" [	0.474	0.507	0.360	2.2e-18
MGI|MGI:2142454	267	Usb1 "U6 snRNA biogenesis 1" [	0.491	0.543	0.308	4.1e-17
RGD|1305215	267	Usb1 "U6 snRNA biogenesis 1" [	0.491	0.543	0.301	1.8e-16
UNIPROTKB|Q9BQ65	265	USB1 "Putative U6 snRNA phosph	0.488	0.543	0.303	3.3e-15
UNIPROTKB|F1RFS6	150	USB1 "Uncharacterized protein"	0.488	0.96	0.303	4.2e-15
UNIPROTKB|Q0II50	265	USB1 "Putative U6 snRNA phosph	0.488	0.543	0.310	8.8e-15
DICTYBASE|DDB_G0279967	275	DDB_G0279967 "UPF0406 family p	0.396	0.425	0.375	2.3e-14
FB|FBgn0037713	258	CG16790 [Drosophila melanogast	0.464	0.531	0.297	1.3e-10

TAIR|locus:2176162 AT5G51170 "AT5G51170" [Arabidopsis thaliana (taxid:3702)]

 Score = 664 (238.8 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
 Identities = 125/207 (60%), Positives = 159/207 (76%)

Query:    89 HLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHIS 148
             ++P V IP  PKKE+  FLK+V+S++P +++V+ DVP + L KDD + E+ A GREFHIS
Sbjct:    81 YVP-VCIPPLPKKEIVCFLKKVASVVPHLHLVEADVPLSILCKDDQKFER-ALGREFHIS 138

Query:   149 LGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLE 208
             LGR VP+RVHQI+S+++MLRQ+LQ Q+RY IDF+KWE FVNDD TR+FLSLE+ T GL E
Sbjct:   139 LGRNVPLRVHQINSVISMLRQKLQLQKRYLIDFNKWEVFVNDDHTRSFLSLEITTSGLSE 198

Query:   209 ITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHK 268
             I+KQI  VNEVY+LHNLPEFYKDPRPHISL W LGD+ +SLK  V  E+++L     +  
Sbjct:   199 ISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGDIRTSLKGAVDVELRKLRAGGCVQN 258

Query:   269 HFFSCKFGGIHCKIGKKTYKICKFSGE 295
               F+ KF GI CKIG KT+KICK   E
Sbjct:   259 RIFTSKFCGIECKIGNKTHKICKLPDE 285

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048573 "photoperiodism, flowering" evidence=RCA

UNIPROTKB|F1NE74 USB1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 51/146 (34%), Positives = 83/146 (56%)

Query:   144 EFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVIT 203
             EFH+SL ++V +R H I   +  L++RL +  R++    + + + N ++TRTF+ LEV T
Sbjct:   109 EFHVSLSQSVVLRYHWISPFMQSLKERLAAFHRFFCVADRVKVYTNQNKTRTFVGLEVST 168

Query:   204 GG--LLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLS 261
             G   LLE+  ++  V E Y   +LP FYKDP  HIS+AW +GD+  SL+   ++E++ + 
Sbjct:   169 GHFQLLELVSEVDKVMEEY---DLPVFYKDPSFHISMAWCVGDLRGSLEGQCLQELQDIV 225

Query:   262 VESSLHKHFFSCKFGGIHCKIGKKTY 287
                         ++  I CK G K +
Sbjct:   226 DRFEDSARILRVQWEQIRCKSGNKFF 251

GO:0005634 "nucleus" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0034477 "U6 snRNA 3'-end processing" evidence=IEA

ZFIN|ZDB-GENE-040801-197 usb1 "U6 snRNA biogenesis 1" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 53/147 (36%), Positives = 84/147 (57%)

Query:   144 EFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVIT 203
             EFH+SL +TV +R H I   V  +R  L   ++++    K + + N ++TRTFL +EV T
Sbjct:   129 EFHLSLSKTVVLRHHWIQPFVQSIRTSLTHFQKFYCVAYKLKVYSNAEKTRTFLGMEVST 188

Query:   204 GG--LLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLS 261
             G   LLE++K   +V+E  +  NL  FY+DP  HISLAW +GD +  LK+  + E++ L 
Sbjct:   189 GTPHLLELSK---IVDETMKEFNLSTFYEDPSFHISLAWCVGDQTERLKKACLLELQGL- 244

Query:   262 VESSLHKHFFS-CKFGGIHCKIGKKTY 287
             +++     F +      + CK G K +
Sbjct:   245 IDAHEDGPFHARLNCNELRCKTGNKVF 271

GO:0005634 "nucleus" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

MGI|MGI:2142454 Usb1 "U6 snRNA biogenesis 1" [Mus musculus (taxid:10090)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 45/146 (30%), Positives = 80/146 (54%)

Query:   144 EFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVIT 203
             EFH+SL ++V +R H I   V +L+ R+ S +R++   ++ + + N ++TRTF+ LEV +
Sbjct:   120 EFHVSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEV-S 178

Query:   204 GGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVE 263
              G  +    +  V+   +  +L  FY+DP  HISLAW +GD S  L+   ++E++ +  E
Sbjct:   179 SGHAQFLDLVSEVDRAMKEFDLTTFYQDPSFHISLAWCVGDASLQLEGQCLQELQEIVDE 238

Query:   264 SSLHKHFFSCKFGGIHCKIGKKTYKI 289
                 +         + CK G K + +
Sbjct:   239 FEDSEMLLRVLANQVRCKSGNKFFSM 264

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISO

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0034477 "U6 snRNA 3'-end processing" evidence=ISO

RGD|1305215 Usb1 "U6 snRNA biogenesis 1" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 44/146 (30%), Positives = 79/146 (54%)

Query:   144 EFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVIT 203
             EFH+SL ++V +R H I   V +L+ R+ S +R++   ++ + + N ++TRTF+ LEV +
Sbjct:   120 EFHLSLSQSVVLRHHWILPFVQVLKDRMASFQRFFFTANRVKIYTNQEKTRTFIGLEV-S 178

Query:   204 GGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVE 263
              G  +    +  V+ V +  +L  FY+DP  H+SLAW +GD    L+    +E++ +  E
Sbjct:   179 SGHAQFLDMVSEVDRVMKEFDLTTFYQDPSFHVSLAWCVGDARLQLEGQCQQELQEIVDE 238

Query:   264 SSLHKHFFSCKFGGIHCKIGKKTYKI 289
                 +         + CK G K + +
Sbjct:   239 FEDSEMLLRVLAEQVRCKSGNKFFSM 264

GO:0000175 "3'-5'-exoribonuclease activity" evidence=ISO

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=ISO;ISS

GO:0034477 "U6 snRNA 3'-end processing" evidence=ISO;ISS

UNIPROTKB|Q9BQ65 USB1 "Putative U6 snRNA phosphodiesterase" [Homo sapiens (taxid:9606)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 44/145 (30%), Positives = 75/145 (51%)

Query:   145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITG 204
             FH+SL ++V +R H I   V  L+ R+ S  R++   ++ + + N ++TRTF+ LEV T 
Sbjct:   119 FHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEV-TS 177

Query:   205 GLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVES 264
             G  +    +  V+ V    NL  FY+DP  H+SLAW +GD    L+   ++E++ +    
Sbjct:   178 GHAQFLDLVSEVDRVMEEFNLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVDGF 237

Query:   265 SLHKHFFSCKFGGIHCKIGKKTYKI 289
                +         + CK G K + +
Sbjct:   238 EDAEVLLRVHTEQVRCKSGNKFFSM 262

GO:0006397 "mRNA processing" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008380 "RNA splicing" evidence=IMP

GO:0000175 "3'-5'-exoribonuclease activity" evidence=IDA

GO:0034477 "U6 snRNA 3'-end processing" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1RFS6 USB1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 44/145 (30%), Positives = 76/145 (52%)

Query:   145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITG 204
             FH+SL ++V +R H I   V +L+ R+ S +R+     + + + N ++TRTF+ LEV T 
Sbjct:     4 FHLSLSQSVVLRHHWILPFVQVLKDRVASFQRFCFTADQVKIYTNQEKTRTFVGLEV-TS 62

Query:   205 GLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVES 264
             G  +    +  V++V    +L  FY+DP  H+SLAW +GD    L+   ++E++ +    
Sbjct:    63 GHAQFLDLVSEVDKVMEEFDLTTFYQDPSFHVSLAWCVGDARLQLEGRCLQELQEIVDAF 122

Query:   265 SLHKHFFSCKFGGIHCKIGKKTYKI 289
                +         I CK G K + +
Sbjct:   123 EDSEMLLRMHAEQIRCKSGNKFFSM 147

GO:0034477 "U6 snRNA 3'-end processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q0II50 USB1 "Putative U6 snRNA phosphodiesterase" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 45/145 (31%), Positives = 73/145 (50%)

Query:   145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITG 204
             FH+SL ++V +R H I   V  L+ R+ S  R+     + + + N ++TRTF+ LEV T 
Sbjct:   119 FHLSLSQSVVLRHHWILPFVQALKDRVASFHRFCFTTDQVKIYTNQEKTRTFVGLEV-TS 177

Query:   205 GLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVES 264
             G       +  V+ V    +L  FY+DP  HISLAW +GD    ++   ++E++ +  E 
Sbjct:   178 GHAHFLDLVAEVDRVMEEFDLSTFYQDPSFHISLAWCVGDARLQMEGPCLQELQGIVDEF 237

Query:   265 SLHKHFFSCKFGGIHCKIGKKTYKI 289
                +         I CK G K + +
Sbjct:   238 EDSEMLLRAYAEQIRCKSGNKFFSM 262

GO:0004518 "nuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0034477 "U6 snRNA 3'-end processing" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

GO:0006397 "mRNA processing" evidence=IEA

DICTYBASE|DDB_G0279967 DDB_G0279967 "UPF0406 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 50/133 (37%), Positives = 72/133 (54%)

Query:   124 VPFTSLRKDDSEL-EQVA-FGRE----------FHISLGRTVPIRVHQIDSIVAMLRQRL 171
             VP T  R D  EL EQV   G E          FHIS+ RT PIR H I++    L++ L
Sbjct:    89 VP-TKSRNDIKELIEQVKEIGNEINIKQDTETCFHISISRTFPIREHHIETFTQELKKTL 147

Query:   172 QSQRRYWIDFSKWEA--FVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFY 229
             ++QR   I  SK E   F+ND+++R FLS+ +       I K I+ ++    L   P++Y
Sbjct:   148 KNQRSIDIQLSK-ECCVFINDNQSRIFLSIPINQSFKSNILKLIERIDSCLSLFKFPKYY 206

Query:   230 KDPRPHISLAWLL 242
              +P PH+S++W L
Sbjct:   207 DNPEPHLSISWSL 219

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

FB|FBgn0037713 CG16790 [Drosophila melanogaster (taxid:7227)]

 Score = 163 (62.4 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 44/148 (29%), Positives = 72/148 (48%)

Query:   146 HISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGG 205
             H+SL RTV ++ HQID     L+  L S   +         + N++RTRTF++  +    
Sbjct:   117 HLSLSRTVVLQYHQIDEFSRSLQSALNSSAGFAATLQGLRIYTNEERTRTFIAAPLDAAF 176

Query:   206 LLEITKQIQVVNEVYRLHNLPEFYKDPRP-HISLAWLLGDVSSSLKRVVVEEMKRLSVES 264
             + ++T  +Q +++V   + L +FY DP   H+SL W +GD  + L   + E  + L  + 
Sbjct:   177 VEKMTAILQPIDQVMLDYRLQQFY-DPASFHVSLLWCVGDQETLLNEKLTELKELLDDQD 235

Query:   265 SLHKHFFSC-KFGGIHCKIGKK--TYKI 289
              L      C     +H K G K  TY +
Sbjct:   236 KL------CLAVNEVHLKCGNKDFTYSL 257


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.138   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      295       251   0.00081  114 3  11 22  0.41    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  195 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.20u 0.13s 20.33t   Elapsed:  00:00:01
  Total cpu time:  20.20u 0.13s 20.33t   Elapsed:  00:00:01
  Start:  Sat May 11 10:43:15 2013   End:  Sat May 11 10:43:16 2013

GO:0005515 "protein binding" evidence=IPI

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014091001 SubName- Full=Putative uncharacterized protein (Chromosome chr16 scaffold_10, whole genome shotgun sequence); (283 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	295
pfam09749	238	pfam09749, HVSL, Uncharacterized conserved protein	3e-50

>gnl|CDD|220378 pfam09749, HVSL, Uncharacterized conserved protein

 Score =  166 bits (421), Expect = 3e-50
 Identities = 64/202 (31%), Positives = 93/202 (46%), Gaps = 9/202 (4%)

Query: 93  VLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRT 152
           V +   P     + L ++ S L   +   ++  F  L   D  +         HISL RT
Sbjct: 43  VYLEWRPSSAELELLDKLISQLNEDHTK-LEATFDPLLISDLGV-----PLPLHISLSRT 96

Query: 153 VPIRVHQIDSIVAMLRQRLQS--QRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEIT 210
           V +R HQID  V  LRQ L+S   RR+ + FS  + + N+++TRTFL LEV       + 
Sbjct: 97  VVLRTHQIDPFVDSLRQALRSAGIRRFKVQFSGLKVYSNEEKTRTFLVLEVSESSKNALN 156

Query: 211 KQIQVVNEVYRLHNLPEFY-KDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKH 269
           + +  +NE  R   LP  Y  DP  H+S+AW LGD S  LK   + E++ +         
Sbjct: 157 RLLDAINEALREFGLPPLYDDDPSFHVSIAWCLGDPSEELKEKSLSELQEILDALEELIF 216

Query: 270 FFSCKFGGIHCKIGKKTYKICK 291
                   + CKIG K + I  
Sbjct: 217 DLQFPVNEVKCKIGNKVFSIPL 238

This entry is of proteins of approximately 300 residues conserved from plants to humans. It contains two conserved motifs, HxSL and FHVSL. The function is unknown. Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	295
KOG3102	269	consensus Uncharacterized conserved protein [Funct	100.0
PF09749	239	HVSL: Uncharacterised conserved protein; InterPro:	100.0
COG1514	180	LigT 2'-5' RNA ligase [Translation, ribosomal stru	99.73
PRK15124	176	2'-5' RNA ligase; Provisional	99.68
TIGR02258	179	2_5_ligase 2'-5' RNA ligase. This protein family c	99.62
PRK13679	168	hypothetical protein; Provisional	99.38
PHA02574	149	57B hypothetical protein; Provisional	99.29
PF13563	153	2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB	99.09
PF10469	209	AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; Inte	99.06
PF02834	87	LigT_PEase: LigT like Phosphoesterase; InterPro: I	98.87
PLN00108	257	unknown protein; Provisional	97.84
PF07823	196	CPDase: Cyclic phosphodiesterase-like protein; Int	96.43
TIGR03223	228	Phn_opern_protn putative phosphonate metabolism pr	96.2
PF05213	248	Corona_NS2A: Coronavirus NS2A protein; InterPro: I	94.29
PF02834	87	LigT_PEase: LigT like Phosphoesterase; InterPro: I	93.23
TIGR02258	179	2_5_ligase 2'-5' RNA ligase. This protein family c	88.15
PF08302	257	tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase	86.27
COG1514	180	LigT 2'-5' RNA ligase [Translation, ribosomal stru	85.08
KOG2814	345	consensus Transcription coactivator complex, P50 c	84.78
PF06299	160	DUF1045: Protein of unknown function (DUF1045); In	83.86
PHA02977	201	hypothetical protein; Provisional	83.75

>KOG3102 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.4e-65  Score=444.41  Aligned_cols=263  Identities=46%  Similarity=0.736  Sum_probs=222.1

Q ss_pred             ccccccCCCCCCCcccCCCCCCCCCCCCC---CCCCCCCCCCCCCCCcccCCCCCCCccccCCCCCCCceEEeeeecccc
Q 040757            3 ALLASYGDSYSDSDTERGNPSNSGINSSS---SQPETTNLPLPPPPLSLVNPPNSLGKYNISSINGSLSILIYAHQLFAV   79 (295)
Q Consensus         3 ~~l~~Y~~s~sdsd~e~~~~~~~~~~~~~---~~~~~~~~~LPp~p~~~~~~~~~~d~~~~~p~~h~gR~R~~pHv~~~~   79 (295)
                      |++|+||+|||++++|+..+ .++..++.   +....+..+||.+.+.+.+.|.+.+-..|+|+.||||+|+|||+    
T Consensus         1 m~~a~yggsSSs~seDe~~~-e~~v~t~pg~~~~~rlP~~~lp~~dsil~pkpg~eef~eDvptehGgRvR~FpHe----   75 (269)
T KOG3102|consen    1 MLRASYGGSSSSSSEDELSP-ESPVTTNPGEKDSIRLPPPPLPLLDSILSPKPGSEEFFEDVPTEHGGRVRNFPHE----   75 (269)
T ss_pred             CcccccCCCCCCccccccCc-cCCcccCCcccccccCCCCCCCchhhhcCCCCCcccccccCccccCceeccCccc----
Confidence            67999999888776665333 22221110   00112233444444445567888888889999999999999999    


Q ss_pred             CCCCCccccc-cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccc
Q 040757           80 LPTKGSIDHH-LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVH  158 (295)
Q Consensus        80 ~~~~Gnw~th-YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~  158 (295)
                         +|||||| |+++..+...++.+.  ++++....|.++.+..|+               +..+.|||||||+++||+|
T Consensus        76 ---rGNwAthVYVP~~a~~~~~eEf~--l~~va~l~PHl~l~~p~~---------------~~~~~fHlSLsr~VvLr~H  135 (269)
T KOG3102|consen   76 ---RGNWATHVYVPVCAPPLPKEEFV--LKKVASLVPHLHLVEPDV---------------ALGREFHLSLSRNVVLRVH  135 (269)
T ss_pred             ---cCceeEEEEEeeccCCChHHHHH--HHHHHhhcccceeeccch---------------hccceEEEeeccceEEEee
Confidence               9999999 999999877666664  677777888888875333               3368999999999999999


Q ss_pred             cHHHHHHHHHHHHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEe
Q 040757          159 QIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISL  238 (295)
Q Consensus       159 qid~f~~~L~~~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSI  238 (295)
                      ||++|+++|++++..+++|.+++++|++|+|+|+||+|+++++..++..++..+++.||++|+.|++|.||++|+||+||
T Consensus       136 qI~~fi~~L~~~l~s~~rf~~t~n~~~iytN~e~TRtFi~leitt~~~~~~~~~i~~vd~Vm~~~nL~~FY~DPsfHiSL  215 (269)
T KOG3102|consen  136 QINSFISMLRQKLQSQKRFLITFNKWEIYTNDEHTRTFISLEITTSGLSEISKQIDAVDEVMKLHNLPEFYKDPSFHISL  215 (269)
T ss_pred             hhhHHHHHHHHHHhhhhhheEeecceEEEeccccceeEEEEEechhhHHHHHHHHHHHHHHHHHcCchhhhcCCCCCceE
Confidence            99999999999999999999999999999999999999999999888899999999999999999999999999999999


Q ss_pred             eeccCCCchHHH-HHHHHHHhhhcccccccceeeEEEeceEEEeeCCeeEEEec
Q 040757          239 AWLLGDVSSSLK-RVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGKKTYKICK  291 (295)
Q Consensus       239 AW~lgd~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~v~~v~ckiGNk~~~i~~  291 (295)
                      +||+||....|+ +++.||++..+.+ +.+++.+.+++.+|+||||||.|+|||
T Consensus       216 ~WcvGD~rt~L~g~~l~EL~~l~dg~-~~~~~~l~v~~~~i~Ck~GNK~f~~~l  268 (269)
T KOG3102|consen  216 VWCVGDIRTSLKGAVLVELRKLRDGG-CVQNRILTVKFCGIECKIGNKTFKICL  268 (269)
T ss_pred             EEEeccHHHhhhhHHHHHHHHHHhcc-chhheeEEEeeeeEEEecCCeeeeeec
Confidence            999999999999 6789999888766 677899999999999999999999997

>PF09749 HVSL: Uncharacterised conserved protein; InterPro: IPR019146 This entry is of proteins of approximately 300 residues conserved from plants to humans

Probab=100.00  E-value=9.5e-62  Score=442.10  Aligned_cols=232  Identities=32%  Similarity=0.473  Sum_probs=203.5

Q ss_pred             CCCCCcccCCCCC--CCccccCCCCCCCceEEeeeeccccCCCCCccccc-cccccCCchhHHHHHHHHHHHhhhCCCce
Q 040757           42 PPPPLSLVNPPNS--LGKYNISSINGSLSILIYAHQLFAVLPTKGSIDHH-LPTVLIPLAPKKELAQFLKRVSSILPGIY  118 (295)
Q Consensus        42 Pp~p~~~~~~~~~--~d~~~~~p~~h~gR~R~~pHv~~~~~~~~Gnw~th-YI~~~~~~~~~~~L~~li~~~~~~~~~l~  118 (295)
                      ||+|++|+++|++  ..++.|||++|+||+|+||||       +|||||| ||+|.++.++++.|..+++++++..+...
T Consensus         1 pplP~~~~~ly~~~~~~~~~d~~~~h~gR~R~~pHv-------~Gnw~t~vYi~~~~~~~~~~~l~~~i~~~~~~~~~~~   73 (239)
T PF09749_consen    1 PPLPSSFLDLYASTVRTSVQDDPSLHGGRIRSFPHV-------EGNWPTHVYIEWPPSEDQRELLEKLISKANSICPKLH   73 (239)
T ss_pred             CCCChHHHhccccccccccccCcccccCceeccccc-------CCccceEEEEEecCcHHHHHHHHHHHHHHHhhhhhhh
Confidence            8999999999996  456788999999999999999       9999999 99999999999999999999998876432


Q ss_pred             eecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHHHH--hcCccEEEEeCCeeeecCCCCceEE
Q 040757          119 VVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRL--QSQRRYWIDFSKWEAFVNDDRTRTF  196 (295)
Q Consensus       119 ~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~~l--~~~~~F~l~~~~l~vf~N~e~tR~F  196 (295)
                      .     .++++..++++     .+.+||||||||+.|++|||++|+++|+++|  +++++|.++|+++.||+|+|+||+|
T Consensus        74 ~-----~~~~~~~s~lg-----~~~~lHISLSr~~~lr~~~id~f~~~lr~~l~~~~~~~F~v~f~~~~~~~N~e~TR~F  143 (239)
T PF09749_consen   74 S-----EFEPLLYSDLG-----SPDPLHISLSRTFPLRTHQIDPFVDSLRQALRSSNIRPFYVSFSGLDVYTNDEKTRSF  143 (239)
T ss_pred             h-----hcccccccccC-----CCCCeEEEeCCCccccHHHHHHHHHHHHHHHhhcCCceEEEEeCceEEEecCCCCeEE
Confidence            2     26677776765     4799999999999999999999999999999  8899999999999999999999999


Q ss_pred             EEEEeccCChhhHHHHHHHHHHHHHHCCCCCCC-CCCCCeeEeeeccCCCchHHHHHH-HHHHhhhcccccccceeeEEE
Q 040757          197 LSLEVITGGLLEITKQIQVVNEVYRLHNLPEFY-KDPRPHISLAWLLGDVSSSLKRVV-VEEMKRLSVESSLHKHFFSCK  274 (295)
Q Consensus       197 l~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y-~~~~fHiSIAW~lgd~~~~l~~~~-~~l~~~~~~~~~~~~~~~~~~  274 (295)
                      |+++|..+...+|+.|+++||++|++||+|+|| ++++||||||||+|++.+.+++.. ..++...+.. .......++.
T Consensus       144 L~l~V~~~~~~~l~~l~~~i~~~l~~~~lp~~Y~~~~~fHvSIAw~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~  222 (239)
T PF09749_consen  144 LALRVSEGSNNELKRLLDRINEVLKEFGLPPFYDEDPSFHVSIAWTLGDPSEELKESSLKILQEPLDEL-EEIENDNSFK  222 (239)
T ss_pred             EEEEecccccHHHHHHHHHHHHHHHHhCCCcccCCCCCCEEEEEEECCCchHHHHHHHHHHHHHHHhhh-hhccceeEEE
Confidence            999999886556999999999999999999999 999999999999999999999864 3343333322 1111223899


Q ss_pred             eceEEEeeCCeeEEEec
Q 040757          275 FGGIHCKIGKKTYKICK  291 (295)
Q Consensus       275 v~~v~ckiGNk~~~i~~  291 (295)
                      |++|+|||||++|+|+|
T Consensus       223 v~~Ik~kiGn~v~~ipL  239 (239)
T PF09749_consen  223 VNSIKCKIGNKVFSIPL  239 (239)
T ss_pred             eeEEEEEECCEEEEecC
Confidence            99999999999999986

It contains two conserved motifs, HxSL and FHVSL. The function is unknown.

>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=6.7e-17  Score=141.71  Aligned_cols=129  Identities=18%  Similarity=0.185  Sum_probs=118.4

Q ss_pred             cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757           90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ  169 (295)
Q Consensus        90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~  169 (295)
                      ||++.+|.++.+.|..+.+.+.... ..+||+                    ++++||||.++|.+....++.+.++|++
T Consensus         4 FiAl~~p~~i~~~i~~~~~~~~~~~-~~k~v~--------------------~en~HiTL~flGev~e~~~~~l~~~l~~   62 (180)
T COG1514           4 FIALDPPAEIAERLARIRARLKGAR-AIKWVE--------------------PENLHITLKFLGEVDEDKADELIEALAR   62 (180)
T ss_pred             EEEecCCHHHHHHHHHHHHhcCccc-cccccc--------------------ccCceEEEEccCCcCchHHHHHHHHHHH
Confidence            8999999999999998888887776 677875                    7899999999999999999999999998


Q ss_pred             HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccC
Q 040757          170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLG  243 (295)
Q Consensus       170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lg  243 (295)
                      ..+.+ +|.|++++++.|+|..++|++|+ +|..  .++|.+|.+.|++.+...|++..-+++.||||||+..+
T Consensus        63 i~~~~-~f~i~l~g~g~F~~~~~~rvi~~-~v~~--~~~L~~L~~~l~~~~~~~g~~~~~r~F~PHvTl~r~k~  132 (180)
T COG1514          63 IAAPE-PFPITLDGAGSFPNPRRPRVIWV-GVEE--TEELRALAEELERALARLGLRPEERPFVPHVTLARVKS  132 (180)
T ss_pred             hhcCC-ceEEEEeeEcccCCCCCCcEEEE-cCCC--cHHHHHHHHHHHHHHHhcCCCCCCCCcCCCEEEEeecc
Confidence            88777 99999999999999999999999 7763  57899999999999999999988999999999998766

>PRK15124 2'-5' RNA ligase; Provisional

Probab=99.68  E-value=2.5e-16  Score=137.17  Aligned_cols=128  Identities=9%  Similarity=0.067  Sum_probs=109.1

Q ss_pred             cc-cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHH
Q 040757           88 HH-LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAM  166 (295)
Q Consensus        88 th-YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~  166 (295)
                      -. ||++.++++.++.|.++++.+.. ....+|+.                    ++++||||.|.|.+..++++.+.+.
T Consensus         5 ~RlFiAl~~p~~~~~~l~~~~~~~~~-~~~~rwv~--------------------~~nlHiTL~FlG~v~~~~~~~l~~~   63 (176)
T PRK15124          5 KRLFFAIDLPDEIRQQIIHWRATHFP-PEAGRPVA--------------------AANLHLTLAFLGEVSAEKQQALSQL   63 (176)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHHhcc-ccCccccc--------------------ccccEEEEEecCCCCHHHHHHHHHH
Confidence            36 99999999999999988877654 23356764                    7899999999999999999999988


Q ss_pred             HHHHHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccC
Q 040757          167 LRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLG  243 (295)
Q Consensus       167 L~~~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lg  243 (295)
                      +.+.  ..++|.++++++++|+   ++|++|+ +|..+ .+.|..|.+.++++++..|++..-+++.||||||+...
T Consensus        64 l~~~--~~~pF~l~l~~~g~Fp---~prvlwl-g~~~~-~~~L~~L~~~l~~~l~~~G~~~e~r~f~PHiTLaR~~~  133 (176)
T PRK15124         64 AGRI--RQPGFTLTLDDAGQWP---RSRVVWL-GMRQP-PRGLLQLANMLRSQAARSGCYQSPQPFHPHITLLRDAS  133 (176)
T ss_pred             HHhc--ccCCeEEEECcccCcC---CCCEEEE-EcCCC-CHHHHHHHHHHHHHHHHcCCCCCCCCCCCCEeeccCCC
Confidence            8654  4589999999999997   4999988 78643 57899999999999999999999999999999998543

>TIGR02258 2_5_ligase 2'-5' RNA ligase

Probab=99.62  E-value=2e-14  Score=124.49  Aligned_cols=131  Identities=18%  Similarity=0.220  Sum_probs=111.7

Q ss_pred             cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757           90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ  169 (295)
Q Consensus        90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~  169 (295)
                      ||++.++++..+.|.++.+.+....+..+|+.                    ++++||||.+.+.+..++++.+.+.|++
T Consensus         4 FiAl~~p~~~~~~l~~~~~~l~~~~~~~r~~~--------------------~~~~HiTL~flg~~~~~~~~~l~~~l~~   63 (179)
T TIGR02258         4 FIAIDLPPEIREQLSRIQRKLKSPLDGIKWVP--------------------PENLHITLKFLGEVDEEQVEELEDALAK   63 (179)
T ss_pred             EEEecCCHHHHHHHHHHHHHhhccCCCcEECC--------------------hHHCEEEEEEccCCCHHHHHHHHHHHHH
Confidence            89999999999999999888875556667764                    6889999999999999999999999887


Q ss_pred             HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCC
Q 040757          170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDV  245 (295)
Q Consensus       170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~  245 (295)
                      ...  .+|.+.+++++.|++..++|++|. ++..  .+.|.+|.+.+.+++...|++..-+++.||||||......
T Consensus        64 ~~~--~~f~l~l~~~~~F~~~~~~~vl~l-~~~~--~~~L~~L~~~l~~~~~~~g~~~~~~~f~PHiTlar~~~~~  134 (179)
T TIGR02258        64 IAE--PPFTLKLEGIGVFGNPKRPRVLWA-GVEQ--SEELTQLHADLERELAKLGFSKEERPFTPHITLARKKSGK  134 (179)
T ss_pred             hcC--CCeEEEEeeeeeCCCCCCCeEEEE-eeCC--CHHHHHHHHHHHHHHHHcCCCCCCCCcCCCEEEEEecCCc
Confidence            653  569999999999999888999987 7763  2589999999999999999986666899999999876543

This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.

>PRK13679 hypothetical protein; Provisional

Probab=99.38  E-value=2.2e-11  Score=105.25  Aligned_cols=158  Identities=16%  Similarity=0.126  Sum_probs=111.1

Q ss_pred             ccccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHH
Q 040757           89 HLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLR  168 (295)
Q Consensus        89 hYI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~  168 (295)
                      |+|++.++.++++.+.++.+++..   ...++                       +-||||.+++.+..++++.+.+.|+
T Consensus         3 ~~iai~~p~~~~~~l~~~~~~~~~---~~~~v-----------------------~pHITL~f~g~~~~~~~~~l~~~l~   56 (168)
T PRK13679          3 YGIVLFPSKKIQDFANSYRKRYDP---HYALI-----------------------PPHITLKEPFEISDEQLDSIVEELR   56 (168)
T ss_pred             eEEEEcCCHHHHHHHHHHHHhhCc---ccccC-----------------------CCceEEecCCCCCHHHHHHHHHHHH
Confidence            478888887777777666544421   12221                       2399999999999999999999999


Q ss_pred             HHHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCCchH
Q 040757          169 QRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSS  248 (295)
Q Consensus       169 ~~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~~~~  248 (295)
                      +..+..++|.+++++++.|+..  ++++|. .+..  ..+|.+|.+++...+.   .+...+++.||||||.....  ++
T Consensus        57 ~~~~~~~pf~l~l~~~~~F~~~--~~vl~l-~~~~--~~~L~~L~~~l~~~~~---~~~~~~~f~PHiTlar~~~~--~~  126 (168)
T PRK13679         57 AIASETKPFTLHVTKVSSFAPT--NNVIYF-KVEK--TEELEELHERLHSGDF---YGEAEYAFVPHITIGQGLSD--DE  126 (168)
T ss_pred             HHHhcCCCEEEEEeccccCCCC--CCEEEE-EccC--CHHHHHHHHHHHhccc---ccccCCCCCCeEEeeCCCCc--HH
Confidence            9888889999999999999874  588877 6663  4789999988876553   23344679999999965433  33


Q ss_pred             HHHHHHHHHhhhcccccccceeeEEEeceEEE--eeCCeeEEEe
Q 040757          249 LKRVVVEEMKRLSVESSLHKHFFSCKFGGIHC--KIGKKTYKIC  290 (295)
Q Consensus       249 l~~~~~~l~~~~~~~~~~~~~~~~~~v~~v~c--kiGNk~~~i~  290 (295)
                      ..+..+.++.        ....+.+.|++|.+  +.||..+.+.
T Consensus       127 ~~~~~~~l~~--------~~~~~~~~v~~i~L~~~~~~~~w~~~  162 (168)
T PRK13679        127 HEDVLGQLKM--------ADVDHEETIDRFHLLYQLENGSWTVY  162 (168)
T ss_pred             HHHHHHHHhc--------CCcceeEEECeEEEEEECCCCeEEEE
Confidence            3333333321        11233678888888  4477666654

>PHA02574 57B hypothetical protein; Provisional

Probab=99.29  E-value=1.3e-11  Score=105.11  Aligned_cols=107  Identities=14%  Similarity=0.130  Sum_probs=86.0

Q ss_pred             cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757           90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ  169 (295)
Q Consensus        90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~  169 (295)
                      ||++.+++++++.|.++.+++..    .+||+                    +++|||||.|    ..++++.+..    
T Consensus        12 F~Al~~~~~~r~~L~~lq~~l~~----~r~V~--------------------~enLHlTL~F----~~~~v~~l~~----   59 (149)
T PHA02574         12 YVAAKFSEATLDALERLQRTLRI----PNPVP--------------------RDKLHSTIVY----SRVYVPFIPA----   59 (149)
T ss_pred             EEEEcCCHHHHHHHHHHHHhccC----CcccC--------------------HHHCEEEEec----CHHHhHHHhc----
Confidence            99999998889999888777422    67765                    7899999999    3555555532    


Q ss_pred             HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeee
Q 040757          170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAW  240 (295)
Q Consensus       170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW  240 (295)
                         ...+|.+.++++++|++.. +|+.|+ ++.   .++|..|.+.+.++++.++    +++++||||||+
T Consensus        60 ---~~~~F~l~l~glG~F~~~~-~rvlWl-g~~---~~~L~~L~~~l~~~l~~~~----~r~F~PHITLaR  118 (149)
T PHA02574         60 ---SGSTEVASSGHLEVWETQD-KNALVL-VLE---SEYLQCRHKYARALGATHD----FDDYTPHITLSY  118 (149)
T ss_pred             ---cCCCeEEEeccccccCCCC-CCEEEE-EeC---CHHHHHHHHHHHHHhhcCC----CCCcCCcEEEee
Confidence               4589999999999997633 799888 675   4889999999999998855    457899999999

>PF13563 2_5_RNA_ligase2: 2'-5' RNA ligase superfamily; PDB: 1IUH_A

Probab=99.09  E-value=3.3e-10  Score=94.52  Aligned_cols=98  Identities=19%  Similarity=0.227  Sum_probs=71.3

Q ss_pred             CCceEEeccccccccccHHHHHHHHHHHHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHH
Q 040757          143 REFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRL  222 (295)
Q Consensus       143 ~~lHISLSr~~~lr~~qid~f~~~L~~~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~  222 (295)
                      .++||||.+++.+.... +.+.+.|+..++...+|.++|+++++|++  ++++++. .+..  ...|.+|.+.+.+.+..
T Consensus        24 ~~pHITL~~~~~~~~~~-~~~~~~l~~~~~~~~~f~l~l~~~~~F~~--~~~vi~l-~~~~--~~~L~~L~~~l~~~~~~   97 (153)
T PF13563_consen   24 WPPHITLAFPFDIDDSL-DELVEALARLAAGFPPFELRLDGFGSFPG--KGRVIFL-NVEP--SPELEALHRALREALRP   97 (153)
T ss_dssp             GG-EEEEEEEEE--GGG-HHHHHHHHHHHHHS--EEEEEEEEEEESS--SSSSEEE-EEEE---HHHHHHHHHHHHHHHH
T ss_pred             CCCEeEEEecCcccccH-HHHHHHHHHHHccCCCeEEEEccEEEcCC--CCCEEEE-EcCC--CHHHHHHHHHHHHHHHH
Confidence            56999999999998766 88899999998888999999999999999  4444444 4532  48899999999999999


Q ss_pred             CCCCCCC-CCCCCeeEeeeccCCCc
Q 040757          223 HNLPEFY-KDPRPHISLAWLLGDVS  246 (295)
Q Consensus       223 fg~p~~Y-~~~~fHiSIAW~lgd~~  246 (295)
                      ++.+... .++.||||||.......
T Consensus        98 ~~~~~~~~~~~~PHiTia~~~~~~~  122 (153)
T PF13563_consen   98 FGFKQDSYRPFRPHITIARRLSPKQ  122 (153)
T ss_dssp             HHGGGGGGS----EEEEEEESS---
T ss_pred             cCCccccCCCcceEEEEeccCCcch
Confidence            9887776 88999999998755444

>PF10469 AKAP7_NLS: AKAP7 2'5' RNA ligase-like domain; InterPro: IPR019510 This entry represents the N-terminal nuclear localisation signal-containing domain found in the cyclic AMP-dependent protein kinase A (PKA) anchor protein, AKAP7

Probab=99.06  E-value=1.8e-09  Score=96.18  Aligned_cols=139  Identities=15%  Similarity=0.165  Sum_probs=105.6

Q ss_pred             ccccccccC-CchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHH
Q 040757           87 DHHLPTVLI-PLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVA  165 (295)
Q Consensus        87 ~thYI~~~~-~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~  165 (295)
                      |||||++++ .+++.+.+..+.+.+....+++.                 -+-+..+..|||||.-..-...++++.-.+
T Consensus         1 pthFl~ipl~~~~i~~~~~~fq~~v~~~~~~~~-----------------~~~~i~~~~lHlTL~vl~L~~~~~i~~a~~   63 (209)
T PF10469_consen    1 PTHFLCIPLNSPEIQEKFKEFQNEVLSKDPGLD-----------------ESAFIPPEKLHLTLGVLSLDTDEEIEKAKE   63 (209)
T ss_pred             CCeEEEEECCCHHHHHHHHHHHHHHHhhcCCCC-----------------HHHcCCcccceEEEEEeeCCCHHHHHHHHH
Confidence            689888887 44678888888888876665430                 012233688999999777777778887777


Q ss_pred             HHHHH---Hhc----CccEEEEeCCeeeecC-CCCceEEEEEEeccC-ChhhHHHHHHHHHHHHHHCCCCC--CCCC-CC
Q 040757          166 MLRQR---LQS----QRRYWIDFSKWEAFVN-DDRTRTFLSLEVITG-GLLEITKQIQVVNEVYRLHNLPE--FYKD-PR  233 (295)
Q Consensus       166 ~L~~~---l~~----~~~F~l~~~~l~vf~N-~e~tR~Fl~l~V~~~-~~~~L~~L~~~vd~~l~~fg~p~--~Y~~-~~  233 (295)
                      .|+..   +..    ..++.|++.|+++|.+ ++++|+.|+ +|... +...|.++.+.+.+.+.+.|+..  ..+. ..
T Consensus        64 ~L~~~~~~i~~~~~~~~~~~i~l~Gl~~f~~d~~~~~VLya-~v~~~~~~~~L~~l~~~l~~~f~~~Gl~~~~~~~~~~~  142 (209)
T PF10469_consen   64 ALKSLKQEIKDQLQNPPPLKITLKGLGYFNDDPSKARVLYA-KVSEDSNSERLQELANKLRERFQEAGLLVTDDRRFSFK  142 (209)
T ss_pred             HHHHHHHHHhhhccCCCCceEEeeechhhCCCCCcceEEEE-cccccchHHHHHHHHHHHHHHHHHcCCccccccCCCcc
Confidence            77655   333    3889999999999999 799999999 77643 24789999999999999999887  3332 58


Q ss_pred             CeeEeeeccC
Q 040757          234 PHISLAWLLG  243 (295)
Q Consensus       234 fHiSIAW~lg  243 (295)
                      ||+||+-+.-
T Consensus       143 ~H~Tl~n~~~  152 (209)
T PF10469_consen  143 PHITLMNTSY  152 (209)
T ss_pred             eEEEEEeccc
Confidence            9999996543

This protein anchors PKA for its role in regulating PKA-mediated gene transcription in both somatic cells and oocytes []. This domain carries the nuclear localisation signal (NLS) KKRKK, that indicates the cellular destiny of this anchor protein []. Binding to the regulatory subunits RI and RII of PKA is mediated via the RI-RII subunit-binding domain at the C terminus.

>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases

Probab=98.87  E-value=5.9e-09  Score=79.97  Aligned_cols=84  Identities=20%  Similarity=0.224  Sum_probs=72.3

Q ss_pred             cCCchhHHHHHHHHHHHhhhC--CCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHHHH
Q 040757           94 LIPLAPKKELAQFLKRVSSIL--PGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRL  171 (295)
Q Consensus        94 ~~~~~~~~~L~~li~~~~~~~--~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~~l  171 (295)
                      .++++.++.|.++.+.++...  .+++|+.                    +.++||||.|.+.+...+++.+++.+.+..
T Consensus         2 ~~p~~~~~~L~~l~~~l~~~~~~~~~r~~~--------------------~~~~HiTL~flg~~~~~~~~~l~~~l~~~~   61 (87)
T PF02834_consen    2 DLPEEIKEQLNQLQERLRQALPPLGIRWVR--------------------PFNPHITLAFLGEVPPDQLPELIEALANIA   61 (87)
T ss_dssp             E-THHHHHHHHHHHHHHHHHCCSCTEEEGS--------------------CGGSEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhhccccCCcccC--------------------CCCCeEEEEeCCCCCHHHHHHHHHHHHhhh
Confidence            467788999999999998655  3456643                    789999999999999999999999999888


Q ss_pred             hcCccEEEEeCCeeeecCCCCceEEE
Q 040757          172 QSQRRYWIDFSKWEAFVNDDRTRTFL  197 (295)
Q Consensus       172 ~~~~~F~l~~~~l~vf~N~e~tR~Fl  197 (295)
                      ....+|.+.++++++|++..++|++|
T Consensus        62 ~~~~~f~~~~~~~~~f~s~~~~rvi~   87 (87)
T PF02834_consen   62 SRFPPFTLTVDGFGLFPSRLRPRVIW   87 (87)
T ss_dssp             CCCB-EEEEEEEEEEEEEEETCEEEE
T ss_pred             ccCCCeEEEEeEEEEeCCCCCCCCcC
Confidence            88899999999999999999999987

These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.

>PLN00108 unknown protein; Provisional

Probab=97.84  E-value=0.00021  Score=66.08  Aligned_cols=151  Identities=13%  Similarity=0.119  Sum_probs=96.6

Q ss_pred             ccccccccccCC--chhHHHHHHHHHHHhhhCCCceeecccccccccccC-chhhhhhhcCCCceEEeccccccccccHH
Q 040757           85 SIDHHLPTVLIP--LAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKD-DSELEQVAFGREFHISLGRTVPIRVHQID  161 (295)
Q Consensus        85 nw~thYI~~~~~--~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~-~~~~~~~~~~~~lHISLSr~~~lr~~qid  161 (295)
                      .=+||||++++.  +++++.+..+.+.+-...+. ..    ..+.+-|.+ ...-+-+..+.-|||||.-..-...++++
T Consensus        34 ~~~THFlavPL~~~p~i~~~~~~Fk~~Vl~~~~~-~~----~~f~~~l~~~gid~siF~~p~~LHLTLgmL~L~~~eev~  108 (257)
T PLN00108         34 EVFTHFVSLPLAIYPDLKKNIEAFQNSVLGNNDK-DP----LKFQSTLAEMGIEKSIFVSPKTFHLTVVMLKLENNESVV  108 (257)
T ss_pred             CCCCeEEEEEcCCCHHHHHHHHHHHHHHHhcccc-cc----ccccccccccCCCHHHcCCCCceEEEEEEEEcCCHHHHH
Confidence            357889999993  78888888887776543210 00    000000000 00011224468899999988877778888


Q ss_pred             HHHHHHHHH---Hhc---CccEEEEeCCeeeecC-CCCceEEEEEEeccC-ChhhHHHHHHHHHHHHHHCCCCC-CC-CC
Q 040757          162 SIVAMLRQR---LQS---QRRYWIDFSKWEAFVN-DDRTRTFLSLEVITG-GLLEITKQIQVVNEVYRLHNLPE-FY-KD  231 (295)
Q Consensus       162 ~f~~~L~~~---l~~---~~~F~l~~~~l~vf~N-~e~tR~Fl~l~V~~~-~~~~L~~L~~~vd~~l~~fg~p~-~Y-~~  231 (295)
                      .-++.|++.   ++.   -+|+.|.+.|++.+.. +.++|+..+ .|.+. +...|.++.+.|-+...+.|+-. .+ +.
T Consensus       109 kA~~~L~s~~~~i~~~l~~~pl~I~lkGL~~Mnddps~~~VLYA-~Ve~~~~~~rLq~~ad~i~~~F~~aGL~~~d~~~~  187 (257)
T PLN00108        109 KAQNILKSICSNVRQALKDRPVFIRLRGLDCMNGSLDKTRVLYA-PVEEVGHEGRLLNACHVIIDAFENAGFAGKDAKSR  187 (257)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCeEEEEEeehhcCCCcccceEEEE-eccccCchhHHHHHHHHHHHHHHHcCCcccccCcc
Confidence            766666544   322   3789999999999975 466999999 88753 23456666666666666678653 33 35


Q ss_pred             CCCeeEeeec
Q 040757          232 PRPHISLAWL  241 (295)
Q Consensus       232 ~~fHiSIAW~  241 (295)
                      -.+|+||.=+
T Consensus       188 vKLH~TlmNt  197 (257)
T PLN00108        188 LKLHATLMNA  197 (257)
T ss_pred             eeeEeEEech
Confidence            7899999944

>PF07823 CPDase: Cyclic phosphodiesterase-like protein; InterPro: IPR012386 2',3' Cyclic nucleotide phosphodiesterases (CPDases) are enzymes that catalyse at least two distinct steps in the splicing of tRNA introns in eukaryotes

Probab=96.43  E-value=0.028  Score=49.96  Aligned_cols=115  Identities=18%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             hhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHHHHhcCccE
Q 040757           98 APKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRY  177 (295)
Q Consensus        98 ~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~~l~~~~~F  177 (295)
                      ...+.|..+|..++..+++...                      .=.-||||.-.+.+.  ..+.+.+.|+....+.+++
T Consensus        14 ~~~~~L~~lI~~L~~~~~~~~p----------------------~F~PHiTL~s~i~~~--~~~~~~~~L~~~~~~~~~~   69 (196)
T PF07823_consen   14 PLYERLKTLISSLASLFPGSPP----------------------PFEPHITLTSGISLD--SSDDVQKVLDSAAAALKPL   69 (196)
T ss_dssp             TTHHHHHHHHHHHHHHST-------------------------------EEEEEEEEE----HHHHHHHHHHHHHH-B-E
T ss_pred             cHHHHHHHHHHHHHHHCCCCCC----------------------CcCCeEEEeCCCccC--CHHHHHHHHHHHHHhccCc
Confidence            5788999999999998874200                      113599998876664  4555555566655566777


Q ss_pred             -----EEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCC------CCCCCCCCCeeEeeec
Q 040757          178 -----WIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNL------PEFYKDPRPHISLAWL  241 (295)
Q Consensus       178 -----~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~------p~~Y~~~~fHiSIAW~  241 (295)
                           .+.|+++..=. .=--++|+.  |..  .++|..|.+.+.+++....-      ..--+++.|||||.+.
T Consensus        70 ~~~~~~v~~~~v~~g~-~yfq~vyl~--v~~--t~~L~~l~~~~r~~~~~~~~~~~~~~~~~~~~y~PHlSLlY~  139 (196)
T PF07823_consen   70 PKNHFTVRFDKVASGD-KYFQCVYLE--VEK--TPELMSLAQIARELFVEGPPDEVKAAEWPREPYMPHLSLLYG  139 (196)
T ss_dssp             -----EEEEEEEEEEE-ETTEEEEEE--E-----HHHHHHHCHHHHCT----------T----S----EEEEE--
T ss_pred             ccceeEEEeeeEeeCC-eEEEEEEEE--ecC--ChhHHHHHHHHHHHhhhccccccccccccCCCCCCeEEEEEc
Confidence                 89998874321 111234444  543  47788777666555432211      1122468999999996

The active site is characterised by two conserved histidine residues []. The enzyme has six cysteine residues, four of which are involved in forming two intra-molecular disulphide bridges. One of these bridges is involved in the catalytic activity of the enzyme as it opens when CPDase is semi-reduced []. Proteins in this entryand belong to 3.1.4.37 from EC and catalyse the reaction Nucleoside 2',3'-cyclic phosphate + H2O = nucleoside 2'-phosphate. ; GO: 0004112 cyclic-nucleotide phosphodiesterase activity; PDB: 1JH7_A 1JH6_B 1FSI_B.

>TIGR03223 Phn_opern_protn putative phosphonate metabolism protein

Probab=96.20  E-value=0.023  Score=51.87  Aligned_cols=92  Identities=13%  Similarity=0.104  Sum_probs=65.9

Q ss_pred             CceEEecccccccccc-HHHHHHHHHHHHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHH
Q 040757          144 EFHISLGRTVPIRVHQ-IDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRL  222 (295)
Q Consensus       144 ~lHISLSr~~~lr~~q-id~f~~~L~~~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~  222 (295)
                      .||+||+-|+.|.... ...+.+.++...+.+.+|.+.-=.+.-..      -|+++.-. +...+|..|...|-+.+..
T Consensus        57 GfHaTLKaPFrLa~g~~~a~L~~al~~fA~~~~pf~i~~L~l~~Lg------~FlAL~P~-~~~~~L~~LAa~~V~~~d~  129 (228)
T TIGR03223        57 GFHATLKAPFRLAPGVTEAELLAAVAAFAATRAPFALPPLRVALLG------GFLALRPA-APCPALQALAAACVRELDP  129 (228)
T ss_pred             ccceeecCCcccCCCCCHHHHHHHHHHHHhcCCCccCCcceeeeeC------CEEEEeeC-CCCHHHHHHHHHHHHhhhh
Confidence            5999999999998766 88999999988888899987622222221      17776544 3457888887766655544


Q ss_pred             ----------------------------CCCCCCCCCCCCeeEeeecc
Q 040757          223 ----------------------------HNLPEFYKDPRPHISLAWLL  242 (295)
Q Consensus       223 ----------------------------fg~p~~Y~~~~fHiSIAW~l  242 (295)
                                                  .|.|-=.++++|||||-=-+
T Consensus       130 fRAPls~aelaRRr~~~Ls~~Q~~~L~~WGYPYV~deFrFHmTLTg~l  177 (228)
T TIGR03223       130 FRAPLTEAELARRRPDQLTPRQRALLERWGYPYVLEEFRFHMTLTGRL  177 (228)
T ss_pred             ccCCCCHHHHhhcCccCCCHHHHHHHHHcCCCceecceEEEEEecCCC
Confidence                                        45554456789999998555

This family of proteins is observed in the vicinity of other caharacterized genes involved in the catabolism of phosphonates via the3 C-P lyase system (GenProp0232), its function is unknown. These proteins are members of the somewhat broader pfam06299 model "Protein of unknown function (DUF1045)" which contains proteins found in a different genomic context as well.

>PF05213 Corona_NS2A: Coronavirus NS2A protein; InterPro: IPR007878 This entry is represented by Coronavirus non-structural protein 2A (32kDa); it is a family of uncharacterised viral proteins

Probab=94.29  E-value=0.64  Score=42.08  Aligned_cols=87  Identities=21%  Similarity=0.233  Sum_probs=61.7

Q ss_pred             CCceEEeccccccccccHHHHHHHHHHHHhcC--ccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHH
Q 040757          143 REFHISLGRTVPIRVHQIDSIVAMLRQRLQSQ--RRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVY  220 (295)
Q Consensus       143 ~~lHISLSr~~~lr~~qid~f~~~L~~~l~~~--~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l  220 (295)
                      .--||||.- +.|+.++|......|++.+..+  .-.+++++..-...     | -+++.|. |    +.+|...+-.++
T Consensus        42 kaPHlSl~m-L~Isd~~i~~V~~~iq~ViddM~~~~~~it~tnp~MLg-----~-~yV~nV~-G----v~slh~ki~n~~  109 (248)
T PF05213_consen   42 KAPHLSLGM-LDISDEDIPDVETAIQKVIDDMVWFEGDITFTNPHMLG-----R-CYVANVK-G----VLSLHDKIVNVF  109 (248)
T ss_pred             ccCeeEEEE-EEcChhhhhhHHHHHHHHHHHhhcccceEEecCceeec-----c-EEEEecc-c----HHHHHHHHHHHH
Confidence            457999974 5678889999888888888764  33467777655553     4 5566876 4    667788888888


Q ss_pred             HHCCCCCCC-CCCCCeeEeeec
Q 040757          221 RLHNLPEFY-KDPRPHISLAWL  241 (295)
Q Consensus       221 ~~fg~p~~Y-~~~~fHiSIAW~  241 (295)
                      .+.|.---- +...||+|||-.
T Consensus       110 ~~kgit~gQSRmwIPHiTia~~  131 (248)
T PF05213_consen  110 RKKGITFGQSRMWIPHITIAQL  131 (248)
T ss_pred             HHhCcCcCcccccccceehhhh
Confidence            776654332 356899999964

Members have a phosphoesterase module (2H) [] and are predicted to be involved in RNA modification. The viral group of 2H phosphoesterases contains proteins from two unrelated virus types: the type C rotaviruses (VP3 protein, IPR011181 from INTERPRO) that are double stranded multipartite RNA viruses and the coronaviruses (NS2 protein, this group) that are positive strand RNA viruses. Given that these viruses have vertebrate hosts, it is likely that the 2H phosphoesterase domain was derived from the host by one of virus groups followed by rapid sequence divergence []. Subsequently, it may have been exchanged between the viral families. Although the direction of the exchange is not clear, it is possible that a double stranded replicative form of a subgenomic RNA transcript of the coronavirus NS2 was stabilised by a rotavirus and incorporated into its multiple double stranded RNA genome []. These proteins can be utilised as novel drug targets because of their predicted RNA modification role.

>PF02834 LigT_PEase: LigT like Phosphoesterase; InterPro: IPR014051 This entry represents a domain found in a number of known and predicted phosphoesterases

Probab=93.23  E-value=0.14  Score=38.77  Aligned_cols=68  Identities=18%  Similarity=0.220  Sum_probs=43.4

Q ss_pred             hhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCCch-HHHHHHHHHHhhhcccccccceeeEEEeceEEE
Q 040757          206 LLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSS-SLKRVVVEEMKRLSVESSLHKHFFSCKFGGIHC  280 (295)
Q Consensus       206 ~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~~~-~l~~~~~~l~~~~~~~~~~~~~~~~~~v~~v~c  280 (295)
                      ..+|.++.+.+.+.+..+|+..- +++.+||||+. +|+..+ .+.+....+......     ...+.+.++++.+
T Consensus         8 ~~~L~~l~~~l~~~~~~~~~r~~-~~~~~HiTL~f-lg~~~~~~~~~l~~~l~~~~~~-----~~~f~~~~~~~~~   76 (87)
T PF02834_consen    8 KEQLNQLQERLRQALPPLGIRWV-RPFNPHITLAF-LGEVPPDQLPELIEALANIASR-----FPPFTLTVDGFGL   76 (87)
T ss_dssp             HHHHHHHHHHHHHHCCSCTEEEG-SCGGSEEEEEE-EEEESHHHHHHHHHHHHHHHCC-----CB-EEEEEEEEEE
T ss_pred             HHHHHHHHHHHhhhccccCCccc-CCCCCeEEEEe-CCCCCHHHHHHHHHHHHhhhcc-----CCCeEEEEeEEEE
Confidence            36788888888888778888777 88999999996 477653 333333434332211     2345667777654

These include bacterial and archaeal 2',5' RNA ligases, and a family of predicted phosphoesterases known as the YjcG family. The 2',5' RNA ligases perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA []. The physiological substrate(s) in prokaryotes may include small 2',5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles. This domain contains a conserved HXTX motif which is thought to be important for catalytic activity, as it is in the related enzyme cyclic nucleotide phosphodiesterase (CPDase) []. In 2',5' RNA ligase this domain is duplicated, with the two conserved motifs forming the proposed active site, which is analogous to that of CPDase [].; PDB: 1VGJ_A 1VDX_A 2FYH_A 2D4G_A.

>TIGR02258 2_5_ligase 2'-5' RNA ligase

Probab=88.15  E-value=2.8  Score=35.81  Aligned_cols=76  Identities=21%  Similarity=0.338  Sum_probs=40.0

Q ss_pred             ceEEEEEEeccCChhhHHHHHHHHHHHHHH-CCCCCCCCCCCCeeEeeeccCCCchH-HHHHHHHHHhhhccccccccee
Q 040757          193 TRTFLSLEVITGGLLEITKQIQVVNEVYRL-HNLPEFYKDPRPHISLAWLLGDVSSS-LKRVVVEEMKRLSVESSLHKHF  270 (295)
Q Consensus       193 tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~-fg~p~~Y~~~~fHiSIAW~lgd~~~~-l~~~~~~l~~~~~~~~~~~~~~  270 (295)
                      .|.|+++.+.+    ++.+.+..+-+.+.. ...-.......+||||+. +|+..+. +....+.+.+..       ...
T Consensus         1 ~R~FiAl~~p~----~~~~~l~~~~~~l~~~~~~~r~~~~~~~HiTL~f-lg~~~~~~~~~l~~~l~~~~-------~~~   68 (179)
T TIGR02258         1 MRLFIAIDLPP----EIREQLSRIQRKLKSPLDGIKWVPPENLHITLKF-LGEVDEEQVEELEDALAKIA-------EPP   68 (179)
T ss_pred             CeEEEEecCCH----HHHHHHHHHHHHhhccCCCcEECChHHCEEEEEE-ccCCCHHHHHHHHHHHHHhc-------CCC
Confidence            38999988753    344444444443331 221122334578999995 5776643 223333333211       123


Q ss_pred             eEEEeceEEE
Q 040757          271 FSCKFGGIHC  280 (295)
Q Consensus       271 ~~~~v~~v~c  280 (295)
                      +.+.++++.+
T Consensus        69 f~l~l~~~~~   78 (179)
T TIGR02258        69 FTLKLEGIGV   78 (179)
T ss_pred             eEEEEeeeee
Confidence            6677777766

This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.

>PF08302 tRNA_lig_CPD: Fungal tRNA ligase phosphodiesterase domain; InterPro: IPR015965 This entry represents a phosphodiesterase domain found in fungal tRNA ligases []

Probab=86.27  E-value=17  Score=33.70  Aligned_cols=124  Identities=15%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             CCCceEEecccccccccc----HHHHHHHHHHHHhcC-----------ccEEEEeCCeeeecCCCCceEEEEEEeccCCh
Q 040757          142 GREFHISLGRTVPIRVHQ----IDSIVAMLRQRLQSQ-----------RRYWIDFSKWEAFVNDDRTRTFLSLEVITGGL  206 (295)
Q Consensus       142 ~~~lHISLSr~~~lr~~q----id~f~~~L~~~l~~~-----------~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~  206 (295)
                      +..|||||...-..+.+.    ++.+.+.....+...           ..+.|++.++-   .+++-=+|.+ ++.....
T Consensus       113 Q~~FHVTL~H~as~k~~~~k~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~rlv---wd~rimai~V-~~~~~~~  188 (257)
T PF08302_consen  113 QPEFHVTLIHRASSKEQPAKELWKRYTKLYKSALKKNPKQEPTQTPTLGSCDVRLERLV---WDDRIMAIVV-RIVPPED  188 (257)
T ss_pred             CCCCeEEEEecccCCcCcchHHHHHHHHHHHhhcccccccccccccccceEEEEEEEEE---ECCcEEEEEE-EccCccc
Confidence            578999998888877644    666666666555431           23666666553   5666555555 4432211


Q ss_pred             hhHHHHHHHHHHHHHHCCCCCC-CCCCCCeeEeeeccCCCchHHH-HHHHHHHhhhcccccccceeeEEEeceEEEeeCC
Q 040757          207 LEITKQIQVVNEVYRLHNLPEF-YKDPRPHISLAWLLGDVSSSLK-RVVVEEMKRLSVESSLHKHFFSCKFGGIHCKIGK  284 (295)
Q Consensus       207 ~~L~~L~~~vd~~l~~fg~p~~-Y~~~~fHiSIAW~lgd~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~v~~v~ckiGN  284 (295)
                      ..-.              .+.+ -.+..+|||||=.-.+.++... ..++.+.+.  .+.......+++.+.+.++=.|.
T Consensus       189 ~~~~--------------~~~~~c~N~~~HITVGT~~~~VkP~eSN~Ll~~~~~~--~g~~~~~gI~e~~i~~~~~~~g~  252 (257)
T PF08302_consen  189 EEDE--------------VPEWECTNKIPHITVGTRDPGVKPKESNDLLERWLEN--EGSGEETGIWEVEIPGVKVLEGT  252 (257)
T ss_pred             cccc--------------cCCcccCCCCCEEEEEcCCCCCCcchHHHHHHHHHhh--ccCCCCCceEEEEeCCceEEEEE
Confidence            1000              2222 1367999999955344444333 334444321  22222345667777777766554


Q ss_pred             e
Q 040757          285 K  285 (295)
Q Consensus       285 k  285 (295)
                      .
T Consensus       253 V  253 (257)
T PF08302_consen  253 V  253 (257)
T ss_pred             E
Confidence            3

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>COG1514 LigT 2'-5' RNA ligase [Translation, ribosomal structure and biogenesis]

Probab=85.08  E-value=5.4  Score=34.99  Aligned_cols=54  Identities=20%  Similarity=0.345  Sum_probs=34.4

Q ss_pred             ceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCCchHHHH
Q 040757          193 TRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKR  251 (295)
Q Consensus       193 tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~~~~l~~  251 (295)
                      .|.|+++.+.    +++...+..+-+-+...+.-+.++...+||||. ++|+..+.--.
T Consensus         1 ~RlFiAl~~p----~~i~~~i~~~~~~~~~~~~~k~v~~en~HiTL~-flGev~e~~~~   54 (180)
T COG1514           1 MRLFIALDPP----AEIAERLARIRARLKGARAIKWVEPENLHITLK-FLGEVDEDKAD   54 (180)
T ss_pred             CeeEEEecCC----HHHHHHHHHHHHhcCcccccccccccCceEEEE-ccCCcCchHHH
Confidence            4899998875    344444333333332222345788889999999 57988875444

>KOG2814 consensus Transcription coactivator complex, P50 component (LigT RNA ligase/phosphodiesterase family) [Transcription]

Probab=84.78  E-value=7.1  Score=37.58  Aligned_cols=103  Identities=13%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             hhhcCCCceEEeccccccccccHHHHHHHHHHHHhc------CccEEEEeCCeeeecCC-CCceEEEEEEeccCChh-hH
Q 040757          138 QVAFGREFHISLGRTVPIRVHQIDSIVAMLRQRLQS------QRRYWIDFSKWEAFVND-DRTRTFLSLEVITGGLL-EI  209 (295)
Q Consensus       138 ~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~~l~~------~~~F~l~~~~l~vf~N~-e~tR~Fl~l~V~~~~~~-~L  209 (295)
                      .+.-|.-+|+|++....+....++.-++.|+.....      -+|+.+.+.++..+.-+ ..+|+..+ .|...+.. -|
T Consensus       171 ~F~~p~~~HLTvgm~~L~~dd~vq~a~e~les~~~e~~~~~~~kp~~i~lkG~~~mnddP~~~kVLYA-kv~~~~~e~~l  249 (345)
T KOG2814|consen  171 LFQGPGTFHLTVGMLKLLNDDDVQKALEILESTFQEIRIDVGEKPLFIDLKGLDKMNDDPSLTKVLYA-KVEPDDYEKFL  249 (345)
T ss_pred             cccCCceeeEEEEEEEecChHHHHHHHHHHHHHHHHHHhccCCCceeeeccchhhhcCCHhHheeeee-eccCcchHHHH
Confidence            334478899999999999999999999998874432      47999999999888766 67888888 77643322 23


Q ss_pred             HHHH-HHHHHHHHHCCCCC-CCCCCCCeeEeeec
Q 040757          210 TKQI-QVVNEVYRLHNLPE-FYKDPRPHISLAWL  241 (295)
Q Consensus       210 ~~L~-~~vd~~l~~fg~p~-~Y~~~~fHiSIAW~  241 (295)
                      .... +.+-....+.|+-. .-++-..|+|+.=+
T Consensus       250 ~~~~~~~i~~~f~~~~li~k~~~~~kLH~TvmNs  283 (345)
T KOG2814|consen  250 QHRCGERILERFVASGLIKKESSSLKLHCTVMNS  283 (345)
T ss_pred             HHHHHHHHHHHHHHhcchhccccccEEEEEEehh
Confidence            3333 33333333444333 22344689999833

>PF06299 DUF1045: Protein of unknown function (DUF1045); InterPro: IPR009389 This family consists of several hypothetical proteins from Agrobacterium, Rhizobium and Brucella species

Probab=83.86  E-value=9.9  Score=32.94  Aligned_cols=88  Identities=14%  Similarity=0.092  Sum_probs=57.4

Q ss_pred             Eeccccccccc-cHHHHHHHHHHHHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCC
Q 040757          148 SLGRTVPIRVH-QIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLP  226 (295)
Q Consensus       148 SLSr~~~lr~~-qid~f~~~L~~~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p  226 (295)
                      ||+-|+.|... .-+.+.+.++...+...+|.+.-=.+.-.      .-|++|.-. +....|..|-..|-+.+..|+-|
T Consensus         1 TLKaPF~La~g~~~~~L~~a~~~~a~~~~pf~l~~L~v~~l------g~FlALvp~-~~~~~L~~LAa~cV~~~d~fRAP   73 (160)
T PF06299_consen    1 TLKAPFRLAEGASEADLLAALAAFAARFAPFELPGLEVARL------GGFLALVPA-GPCPALQALAAACVRAFDPFRAP   73 (160)
T ss_pred             CCCCCcccCCCCCHHHHHHHHHHHhccCCCccCCceeEeeE------CCEEEEeeC-CCCHHHHHHHHHHHHhhhhccCC
Confidence            45667777643 46678888887777788887652222222      248887655 33577887777766665555544


Q ss_pred             C----------------------------CCCCCCCeeEeeecc
Q 040757          227 E----------------------------FYKDPRPHISLAWLL  242 (295)
Q Consensus       227 ~----------------------------~Y~~~~fHiSIAW~l  242 (295)
                      .                            =.++++|||||---+
T Consensus        74 ls~aelaRR~~~~Ls~~Q~~~L~rWGYPYV~deFRFHmTLTg~l  117 (160)
T PF06299_consen   74 LSEAELARRRPAGLSPRQRANLERWGYPYVMDEFRFHMTLTGRL  117 (160)
T ss_pred             CChHHHhhcCcccCCHHHHHHHHHhCCCceeCcCEeeEEeCCCC
Confidence            3                            334689999998555

The function of this family is unknown.

>PHA02977 hypothetical protein; Provisional

Probab=83.75  E-value=17  Score=31.22  Aligned_cols=133  Identities=14%  Similarity=0.140  Sum_probs=67.9

Q ss_pred             CCccccc-cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHH
Q 040757           83 KGSIDHH-LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQID  161 (295)
Q Consensus        83 ~Gnw~th-YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid  161 (295)
                      --|||+- |-.+.+..++.+ ++.+--+   ..-+.                        .-+-||+|.-.   ...|-+
T Consensus        35 y~nwasinfydirld~~isd-~~niaik---ymtgc------------------------di~phitlgia---n~dq~~   83 (201)
T PHA02977         35 YCNWASINFYDIRLDKDISD-LENIAIK---YMTGC------------------------DIFPHITLGIA---NKDQCD   83 (201)
T ss_pred             ccccceeeeEEEEecCCcch-hhhhhhh---hhccC------------------------CCCcceeeecc---CccHhH
Confidence            7899999 999988765432 2211111   01110                        12469998543   445555


Q ss_pred             HHHHHHHHHHhc--CccEEEEeCCeeeecCCCCce--------EEEEEEeccCChhhHHHHHHHHHHHH----HHCCCCC
Q 040757          162 SIVAMLRQRLQS--QRRYWIDFSKWEAFVNDDRTR--------TFLSLEVITGGLLEITKQIQVVNEVY----RLHNLPE  227 (295)
Q Consensus       162 ~f~~~L~~~l~~--~~~F~l~~~~l~vf~N~e~tR--------~Fl~l~V~~~~~~~L~~L~~~vd~~l----~~fg~p~  227 (295)
                      .|-+ .++.++.  .+..++.....-.|+-...+.        +-+-|+++    +.|..|...+-.++    .-||--.
T Consensus        84 ~f~~-fk~~~~d~dl~sis~~cke~icfpqs~askelga~g~avvmkle~s----ddlkalrnvl~n~vp~pkdifg~i~  158 (201)
T PHA02977         84 NFEN-FKELIKDIDLQSISFTCKEEICFPQSNASKELGAKGCAVVMKLEAS----DDLKALRNVLFNAVPCPKDIFGDIL  158 (201)
T ss_pred             HHHH-HHHHhhcccceeEEEEeeeeEeccccchhhhhCcCccEEEEEEEec----hHHHHHHHHhhcccCCcHHhhcccc
Confidence            5543 3334433  344444555555666544332        22333433    45555544332222    2344322


Q ss_pred             CCCCCCCeeEeeeccCCCchHHHH
Q 040757          228 FYKDPRPHISLAWLLGDVSSSLKR  251 (295)
Q Consensus       228 ~Y~~~~fHiSIAW~lgd~~~~l~~  251 (295)
                      --.+-.|||+|++...|-.+.-++
T Consensus       159 ~d~~w~phitigyv~~dd~dnk~r  182 (201)
T PHA02977        159 SDNPWCPHITIGYVKADDEDNKKR  182 (201)
T ss_pred             cCCCCCCceEEEeecccchhhHHH
Confidence            223458999999987766654444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	295
4h7w_A	193	Crystal Structure Of Human C16orf57 Length = 193		2e-14

>pdb|4H7W|A Chain A, Crystal Structure Of Human C16orf57 Length = 193

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/147 (29%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Query: 145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITG 204
           FH+SL ++V +R H I   V  L+ R+ S  R++   ++ + + N ++TRTF+ LEV +G
Sbjct: 47  FHLSLSQSVVLRHHWILPFVQALKARMTSFHRFFFTANQVKIYTNQEKTRTFIGLEVTSG 106
Query: 205 --GLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSV 262
               L++  ++  V E +   NL  FY+DP  H+SLAW +GD    L+   ++E++ +  
Sbjct: 107 HAQFLDLVSEVDRVMEEF---NLTTFYQDPSFHLSLAWCVGDARLQLEGQCLQELQAIVD 163
Query: 263 ESSLHKHFFSCKFGGIHCKIGKKTYKI 289
                +         + CK G K + +
Sbjct: 164 GFEDAEVLLRVHTEQVRCKSGNKFFSM 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	295
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 8e-06
 Identities = 34/223 (15%), Positives = 69/223 (30%), Gaps = 58/223 (26%)

Query: 88  HHLPTVLIPLAPKKELAQFLKRVSSILPGI---YVVDVDVPFTSLRKDDSELEQVAFGRE 144
           HH+           E  +   +   IL      +V + D       KD  ++ +    +E
Sbjct: 5   HHMDF---------ETGEHQYQYKDILSVFEDAFVDNFDC------KDVQDMPKSILSKE 49

Query: 145 FHISLGRTVPIRVHQIDSIVAMLRQRLQSQRRYWIDFSK----WEAFVNDDRTRTFLSLE 200
                         +ID I+        + R +W   SK     + FV +     +   +
Sbjct: 50  --------------EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY---K 92

Query: 201 VITGGLLEITKQIQVVNEVY-----RLHNLPEFYKD-----PRPHISL-AWLLGDVSSSL 249
            +   +    +Q  ++  +Y     RL+N  + +        +P++ L   LL       
Sbjct: 93  FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL--RPA 150

Query: 250 KRVVVEEM----KRLSVESSLHKHFFSCKF-GGIH-CKIGKKT 286
           K V+++ +    K          +   CK    I    +    
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	295
1vgj_A	184	Hypothetical protein PH0099; alpha+beta, LIGT-like	99.73
1iuh_A	198	2'-5' RNA ligase; riken structural genomics/proteo	99.64
2vfk_A	205	AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom	99.55
1jh6_A	189	Cyclic phosphodiesterase; ADP-ribose 1'',2''-cycli	99.35
2d4g_A	171	Hypothetical protein BSU11850; beta barrel, alpha	99.33
2fsq_A	243	ATU0111 protein; alpha-beta barrel, structural gen	96.07
1jh6_A	189	Cyclic phosphodiesterase; ADP-ribose 1'',2''-cycli	86.56
1vgj_A	184	Hypothetical protein PH0099; alpha+beta, LIGT-like	84.49
2vfk_A	205	AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Hom	80.96

>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A

Probab=99.73  E-value=8.2e-17  Score=137.88  Aligned_cols=132  Identities=14%  Similarity=0.107  Sum_probs=115.1

Q ss_pred             cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757           90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ  169 (295)
Q Consensus        90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~  169 (295)
                      ||++.+++++++.|.++.+.+.......+|+.                    ++++||||.+.+.+..++++.+.+.|++
T Consensus         4 Fial~~p~~~~~~l~~~~~~l~~~~~~~~~v~--------------------~~~lHiTL~flg~~~~~~~~~l~~~l~~   63 (184)
T 1vgj_A            4 FIAIDVNESVRDSLVRAQDYIGSKEAKIKFVE--------------------RENLHITLKFLGEITEEQAEEIKNILKK   63 (184)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHCSSSEEEEECC--------------------GGGCEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHHhhcCCCcEecC--------------------ccccEEEEEeecCCCHHHHHHHHHHHHH
Confidence            89999999999999999888865422356764                    6899999999999999999999999999


Q ss_pred             HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCC
Q 040757          170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDV  245 (295)
Q Consensus       170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~  245 (295)
                      .++...+|.++++++++|++..++|++|+ +|..+  ++|..|.+.+.+.+...|++..- ++.||||||......
T Consensus        64 ~~~~~~pf~l~l~g~g~F~~~~~p~vl~~-~v~~~--~~L~~L~~~l~~~l~~~g~~~~~-~f~PHiTLar~~~~~  135 (184)
T 1vgj_A           64 IAEKYKKHEVKVKGIGVFPNPNYIRVIWA-GIEND--EIIREMAREIEDELAKLGFKKEG-NFVAHITLGRVKFVK  135 (184)
T ss_dssp             HHTTSBCEEEEEEEEEEEECSSSEEEEEE-EEETC--HHHHHHHHHHHHHHHTTTCCCCC-CCCCEEEEEEEEEES
T ss_pred             HHccCCCeEEEEeeEeeCCCCCCCcEEEE-EecCC--HHHHHHHHHHHHHHHHcCCCCCC-CccceEEEEeecccC
Confidence            98888999999999999999999999998 77643  88999999999999999998766 899999999875433

>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2

Probab=99.64  E-value=1.3e-15  Score=133.09  Aligned_cols=130  Identities=15%  Similarity=0.180  Sum_probs=112.6

Q ss_pred             cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757           90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ  169 (295)
Q Consensus        90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~  169 (295)
                      ||++.+++++.+.|.++.+.+.. ....+|+.                    ++++||||.+++.+..++++.+.+.|++
T Consensus         4 Fial~~p~~~~~~l~~~~~~l~~-~~~~r~v~--------------------~~~~HiTL~flgev~~~~~~~l~~~l~~   62 (198)
T 1iuh_A            4 FYAVFLPEEVRAALVEAQTKVRP-FRGWKPVP--------------------PHQLHLTLLFLGERPEEELPDYLALGHR   62 (198)
T ss_dssp             EEEEECCHHHHHHHHHHHGGGTT-CTTEEECC--------------------GGGCEEEEEEEEECCGGGHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHhhh-hcCCcccC--------------------CCCCEEEEEeCCcCCHHHHHHHHHHHHH
Confidence            89999998888888888777655 22367764                    5789999999999999999999999999


Q ss_pred             HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHC-C-----CCCCCCCCCCeeEeeeccC
Q 040757          170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLH-N-----LPEFYKDPRPHISLAWLLG  243 (295)
Q Consensus       170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~f-g-----~p~~Y~~~~fHiSIAW~lg  243 (295)
                      .++...+|.++++++++|++..++|++|+ +| .  .+.|..|.+.|.+.+..+ |     ++..-+++.||||||....
T Consensus        63 ~~~~~~pf~l~l~g~g~F~~~~~p~vl~l-~v-~--~~~L~~L~~~l~~~l~~~~g~~~~~~~~~~~~f~PHiTLar~~~  138 (198)
T 1iuh_A           63 LARLEAPFRARLRGTGYFPNEGTPRVWFA-KA-E--AEGFLRLAEGLRAGVEELLGEEAVRIPGWDKPFKPHITLARRKA  138 (198)
T ss_dssp             HHHHSCCEEEEEEEEEEESSSSSCSEEEE-EE-E--CHHHHHHHHHHHHHHHHHHGGGGGGSTTTTSCCCCEEEEEEESS
T ss_pred             HhccCCCeEEEEcceEECCCCCCCCEEEE-EC-C--CHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCCcEEeEeccC
Confidence            88788999999999999999999999998 66 2  378999999999999998 9     8877778999999998754


Q ss_pred             C
Q 040757          244 D  244 (295)
Q Consensus       244 d  244 (295)
                      .
T Consensus       139 ~  139 (198)
T 1iuh_A          139 P  139 (198)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A

Probab=99.55  E-value=2.7e-14  Score=124.42  Aligned_cols=128  Identities=10%  Similarity=0.102  Sum_probs=106.4

Q ss_pred             cccccCCc-hhHHHHHHHHHHHhhhCCC--ceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHH
Q 040757           90 LPTVLIPL-APKKELAQFLKRVSSILPG--IYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAM  166 (295)
Q Consensus        90 YI~~~~~~-~~~~~L~~li~~~~~~~~~--l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~  166 (295)
                      ||++.+++ ++.+.|.++.+.+....+.  .+|+.                    ++++||||.+.+.+..++++.+.+.
T Consensus         6 Fial~~~~~~~~~~l~~~~~~l~~~~~~~~~~~v~--------------------~~~~HiTL~flg~~~~~~~~~l~~~   65 (205)
T 2vfk_A            6 FLSIPITNKKITAGIKVLQNSILRQDNRLTKAMVG--------------------DGSFHITLLVMQLLNEDEVNIGTDA   65 (205)
T ss_dssp             EEEEECCCHHHHHHHHHHHHHHHHHCGGGGGGBCC--------------------TTCCEEEEEEECCCSHHHHHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHHhcCcchHHHhCC--------------------cCccEEEEEEEEcCCHHHHHHHHHH
Confidence            99999997 7999999999888754332  35553                    7899999999999999999999999


Q ss_pred             HHHHHhcC------ccEEEEeCCeeeecCCCCceEEEEEEeccC-ChhhHHHHHHHHHHHHHHCCCC-CCCCCCCCeeEe
Q 040757          167 LRQRLQSQ------RRYWIDFSKWEAFVNDDRTRTFLSLEVITG-GLLEITKQIQVVNEVYRLHNLP-EFYKDPRPHISL  238 (295)
Q Consensus       167 L~~~l~~~------~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~-~~~~L~~L~~~vd~~l~~fg~p-~~Y~~~~fHiSI  238 (295)
                      |++....+      .+|.++++++++|++    |++|+ +|..+ +.+.|..|.+.|.+.+...|++ ..++++.|||||
T Consensus        66 l~~~~~~~~~~~~~~pf~l~l~g~~~F~~----~vl~~-~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~~~~~f~PHiTl  140 (205)
T 2vfk_A           66 LLELKPFVEEILEGKHLTLPFHGIGTFQG----QVGFV-KLADGDHVSALLEIAETAKRTFQEKGILAGESRTFKPHLTF  140 (205)
T ss_dssp             HHHHHHHHHHHTTTSCCEEEEEEEEEETT----TEEEE-EECCSHHHHHHHHHHHHHHHHHHTTTCCBCCSSCCCCCEEE
T ss_pred             HHHHHHHHHHHhCCCCcEEEEechhhCCC----cEEEE-eecccccHHHHHHHHHHHHHHHHHcCCCcCCCCCcceEEEE
Confidence            98765544      899999999999997    68877 67643 2368999999999999999994 467889999999


Q ss_pred             eecc
Q 040757          239 AWLL  242 (295)
Q Consensus       239 AW~l  242 (295)
                      |...
T Consensus       141 ar~~  144 (205)
T 2vfk_A          141 MKLS  144 (205)
T ss_dssp             EEGG
T ss_pred             Eecc
Confidence            9874

>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*

Probab=99.35  E-value=2.1e-11  Score=105.73  Aligned_cols=118  Identities=13%  Similarity=0.091  Sum_probs=96.1

Q ss_pred             ccc-cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHH
Q 040757           87 DHH-LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVA  165 (295)
Q Consensus        87 ~th-YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~  165 (295)
                      ..| |+.++ ++++++.|.++++.++...+.                        .+.++||||  .+.+... .+.+.+
T Consensus         7 ~~~~f~~~p-p~~~~~~l~~~~~~l~~~~~~------------------------~~~~~HiTL--lG~~~~~-~~~l~~   58 (189)
T 1jh6_A            7 DVYSVWALP-DEESEPRFKKLMEALRSEFTG------------------------PRFVPHVTV--AVSAYLT-ADEAKK   58 (189)
T ss_dssp             EEEEEEEEE-CTTTHHHHHHHHHHHHHHHTC------------------------CCCCCCEEE--EEEEEEC-HHHHHH
T ss_pred             CcEEEEEEC-CHHHHHHHHHHHHHHHHHcCC------------------------CCCCCEEEE--eCCCCCC-HHHHHH
Confidence            446 77777 678899999999888764321                        157899999  7888776 889999


Q ss_pred             HHHHHHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeec
Q 040757          166 MLRQRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWL  241 (295)
Q Consensus       166 ~L~~~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~  241 (295)
                      .|++..+..++|.+++++++.+  ...+|++|+ +|..  .++|..|.+.+++.   +|++.- +++.||||||+.
T Consensus        59 ~L~~~a~~~~pf~l~l~g~g~~--~~~~rvlw~-~v~~--~~~L~~L~~~v~~~---~g~~~~-~~f~PHlTLar~  125 (189)
T 1jh6_A           59 MFESACDGLKAYTATVDRVSTG--TFFFQCVFL-LLQT--TPEVMEAGEHCKNH---FNCSTT-TPYMPHLSLLYA  125 (189)
T ss_dssp             HHHHHHHTCBCEEEEEEEEEEE--EETTEEEEE-EECC--CHHHHHHHHHHHHH---TTCCCC-SCCCCEEEEECC
T ss_pred             HHHHHHhhCCCeEEEEcceecc--CccceEEEE-eecC--CHHHHHHHHHHHHH---hCCCCC-CCCCCeEEEEEe
Confidence            9998888889999999999994  567999998 7863  38899999998875   788764 589999999975

>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}

Probab=99.33  E-value=8.6e-12  Score=105.39  Aligned_cols=119  Identities=13%  Similarity=0.128  Sum_probs=94.3

Q ss_pred             cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757           90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ  169 (295)
Q Consensus        90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~  169 (295)
                      ||++.+++++++.|.++.+++..   ..+|+                      .+ ||||.+++.+...+++.+.+.|++
T Consensus         4 Fiai~~~~~~~~~l~~~~~~~~~---~~~~v----------------------~p-HiTL~f~g~~~~~~~~~l~~~l~~   57 (171)
T 2d4g_A            4 GIVLFPSKKLQDLANSYRKRYDP---SYSLI----------------------PP-HLTLRASFECAEEKADQLVSHLRN   57 (171)
T ss_dssp             EEEBCCCHHHHHHHHHHHHHHCG---GGGTS----------------------CS-CBCCSSCEECCGGGHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHhCc---ccCCC----------------------CC-eEEeecCCcCChHHHHHHHHHHHH
Confidence            89999998888888888877633   23343                      23 999999999999999999999999


Q ss_pred             HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeecc
Q 040757          170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLL  242 (295)
Q Consensus       170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~l  242 (295)
                      .++...+|.+++++++.|+  .++.++|. +|..  .++|..|.+.+.+.+..   ....+++.||||||...
T Consensus        58 ~~~~~~pf~l~l~~~g~F~--~~~~vl~l-~~~~--~~~L~~L~~~l~~~~~~---~~~~~~f~PHiTLar~~  122 (171)
T 2d4g_A           58 IAKESHPLVLKMTKYSSFA--PVNNVIYI-KAEP--TEELKTLNEKLYTGVLA---GEQEYNFVPHVTVGQNL  122 (171)
T ss_dssp             HHHTCCCEEEEEEEEEECT--TTCCCEEE-EECC--CHHHHHHHHHTTSGGGC---SCCCSCCCCEEEEECSC
T ss_pred             HHccCCCEEEEECCcEEeC--CCCcEEEE-EccC--ChHHHHHHHHHHhcccc---cccCCCCCCeEEeecCC
Confidence            9888899999999999997  22237776 6663  37899998888776543   23456789999999754

>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4

Probab=96.07  E-value=0.15  Score=45.79  Aligned_cols=121  Identities=9%  Similarity=0.078  Sum_probs=69.5

Q ss_pred             chhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEecccccc---c----------cccHHHH
Q 040757           97 LAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPI---R----------VHQIDSI  163 (295)
Q Consensus        97 ~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~l---r----------~~qid~f  163 (295)
                      .+..+.|.++.+++.+..-.-+.+                  +..+..||+||--.+.=   +          ...++..
T Consensus        53 s~~~~~l~~iq~~L~~~~~~~~~~------------------~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d~~l~~~  114 (243)
T 2fsq_A           53 SQTESAIVSTRQRFLDMPEASQLA------------------FTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPIDAV  114 (243)
T ss_dssp             SHHHHHHHHHHHHHHTSGGGGGEE------------------ECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCHHHH
T ss_pred             ChHHHHHHHHHHHHHhccccCcee------------------eCCchhhhhhhccccccccccCCCCCccCcccchHHHH
Confidence            345677777777776543211111                  12357899999553331   1          2357777


Q ss_pred             HHHHHHHHhc---CccEEEEeCCeeeecCCCCceEEEEEEec---cCChhhHHHHHHHHHHHHHHCCCCC-CCCCCCCee
Q 040757          164 VAMLRQRLQS---QRRYWIDFSKWEAFVNDDRTRTFLSLEVI---TGGLLEITKQIQVVNEVYRLHNLPE-FYKDPRPHI  236 (295)
Q Consensus       164 ~~~L~~~l~~---~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~---~~~~~~L~~L~~~vd~~l~~fg~p~-~Y~~~~fHi  236 (295)
                      .+.+.+.++.   ..+|.+++.++.  +    +    ++.+.   +.....|..+.+.+.+   .+|+.. .+..+.|||
T Consensus       115 ~~~~~~~l~~~~~~~p~~~~v~~l~--~----~----~v~L~Pade~~~~~L~~~R~~l~q---~lGi~~p~hd~y~fHI  181 (243)
T 2fsq_A          115 TDYYRDRLSTFPTLPAFNMRVTGLR--P----V----GMVMKGATAEDDSIVALWRDTFAD---FFGYRHPDHDTYEFHI  181 (243)
T ss_dssp             HHHHHHHGGGCCCCCCCCEEEEEEE--T----T----EEEEEESSHHHHHHHHHHHHHHHH---HHTCCCTTGGGCCEEE
T ss_pred             HHHHHHHHhcccCCCCeEEEEeccc--c----c----eEEEecCCHHHHHHHHHHHHHHHH---HhCCCCCCCcceEEEE
Confidence            7777777755   356777777661  1    1    33443   2223445555555544   556422 234689999


Q ss_pred             EeeeccCCCchH
Q 040757          237 SLAWLLGDVSSS  248 (295)
Q Consensus       237 SIAW~lgd~~~~  248 (295)
                      |||+....+.++
T Consensus       182 TLgY~~~~l~~e  193 (243)
T 2fsq_A          182 TLSYIVSWFEPE  193 (243)
T ss_dssp             ECEEESSCBCGG
T ss_pred             EEEeccCCCCHH
Confidence            999987666655

>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*

Probab=86.56  E-value=2.4  Score=35.62  Aligned_cols=75  Identities=7%  Similarity=0.010  Sum_probs=43.5

Q ss_pred             CCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCCchHHHHHHHHHHhhhcccccccce
Q 040757          190 DDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSSLKRVVVEEMKRLSVESSLHKH  269 (295)
Q Consensus       190 ~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~~~~l~~~~~~l~~~~~~~~~~~~~  269 (295)
                      +...|.||++. ...-.+.|..+++.+..   .++.+    ...+||||   +|+....+.+....|.+....     ..
T Consensus         5 ~~~~~~f~~~p-p~~~~~~l~~~~~~l~~---~~~~~----~~~~HiTL---lG~~~~~~~~l~~~L~~~a~~-----~~   68 (189)
T 1jh6_A            5 KKDVYSVWALP-DEESEPRFKKLMEALRS---EFTGP----RFVPHVTV---AVSAYLTADEAKKMFESACDG-----LK   68 (189)
T ss_dssp             CCEEEEEEEEE-CTTTHHHHHHHHHHHHH---HHTCC----CCCCCEEE---EEEEEECHHHHHHHHHHHHHT-----CB
T ss_pred             CCCcEEEEEEC-CHHHHHHHHHHHHHHHH---HcCCC----CCCCEEEE---eCCCCCCHHHHHHHHHHHHhh-----CC
Confidence            45678999977 33333455555555433   44543    35899999   577665544443444332211     13


Q ss_pred             eeEEEeceEEE
Q 040757          270 FFSCKFGGIHC  280 (295)
Q Consensus       270 ~~~~~v~~v~c  280 (295)
                      .+.+.++++-+
T Consensus        69 pf~l~l~g~g~   79 (189)
T 1jh6_A           69 AYTATVDRVST   79 (189)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CeEEEEcceec
Confidence            46777788877

>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A

Probab=84.49  E-value=2.7  Score=34.52  Aligned_cols=77  Identities=17%  Similarity=0.257  Sum_probs=40.3

Q ss_pred             eEEEEEEeccCChhhHHHHHHHHHHHHHHCCC-CCCCCCCCCeeEeeeccCCCch-HHHHHHHHHHhhhcccccccceee
Q 040757          194 RTFLSLEVITGGLLEITKQIQVVNEVYRLHNL-PEFYKDPRPHISLAWLLGDVSS-SLKRVVVEEMKRLSVESSLHKHFF  271 (295)
Q Consensus       194 R~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~-p~~Y~~~~fHiSIAW~lgd~~~-~l~~~~~~l~~~~~~~~~~~~~~~  271 (295)
                      |.|+++.+.    +++.+.+..+-+.+...+. -....+..+||||+.. |+..+ .+.+....+.+....     ...+
T Consensus         2 R~Fial~~p----~~~~~~l~~~~~~l~~~~~~~~~v~~~~lHiTL~fl-g~~~~~~~~~l~~~l~~~~~~-----~~pf   71 (184)
T 1vgj_A            2 RAFIAIDVN----ESVRDSLVRAQDYIGSKEAKIKFVERENLHITLKFL-GEITEEQAEEIKNILKKIAEK-----YKKH   71 (184)
T ss_dssp             EEEEEEECC----HHHHHHHHHHHHHHCSSSEEEEECCGGGCEEEEEEE-ESCCHHHHHHHHHHHHHHHTT-----SBCE
T ss_pred             eEEEEEcCC----HHHHHHHHHHHHHHhhcCCCcEecCccccEEEEEee-cCCCHHHHHHHHHHHHHHHcc-----CCCe
Confidence            899998875    3444444444333332211 1222345679999964 66554 344433444433221     1345


Q ss_pred             EEEeceEEE
Q 040757          272 SCKFGGIHC  280 (295)
Q Consensus       272 ~~~v~~v~c  280 (295)
                      .+.++++-+
T Consensus        72 ~l~l~g~g~   80 (184)
T 1vgj_A           72 EVKVKGIGV   80 (184)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEeeEee
Confidence            666677655

>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A

Probab=80.96  E-value=11  Score=31.29  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=43.5

Q ss_pred             CceEEEEEEeccCChhhHHHHHHHHHHHHH-HC-CC-CCCCCCCCCeeEeeeccCCCch-HHHHHHHHHHhhhcccc-cc
Q 040757          192 RTRTFLSLEVITGGLLEITKQIQVVNEVYR-LH-NL-PEFYKDPRPHISLAWLLGDVSS-SLKRVVVEEMKRLSVES-SL  266 (295)
Q Consensus       192 ~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~-~f-g~-p~~Y~~~~fHiSIAW~lgd~~~-~l~~~~~~l~~~~~~~~-~~  266 (295)
                      +.|.|+++.+..   +++...+..+-+.+. .. ++ -.+..+..+||||+.. |+..+ .+.+....+.+...... ..
T Consensus         2 ~~r~Fial~~~~---~~~~~~l~~~~~~l~~~~~~~~~~~v~~~~~HiTL~fl-g~~~~~~~~~l~~~l~~~~~~~~~~~   77 (205)
T 2vfk_A            2 QPNYFLSIPITN---KKITAGIKVLQNSILRQDNRLTKAMVGDGSFHITLLVM-QLLNEDEVNIGTDALLELKPFVEEIL   77 (205)
T ss_dssp             CCCEEEEEECCC---HHHHHHHHHHHHHHHHHCGGGGGGBCCTTCCEEEEEEE-CCCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEEcCC---HHHHHHHHHHHHHHHhcCcchHHHhCCcCccEEEEEEE-EcCCHHHHHHHHHHHHHHHHHHHHHh
Confidence            469999998863   244444444433332 22 32 2344567899999964 76544 34443333332211000 00


Q ss_pred             cceeeEEEeceEEE
Q 040757          267 HKHFFSCKFGGIHC  280 (295)
Q Consensus       267 ~~~~~~~~v~~v~c  280 (295)
                      ....+.+.++++-+
T Consensus        78 ~~~pf~l~l~g~~~   91 (205)
T 2vfk_A           78 EGKHLTLPFHGIGT   91 (205)
T ss_dssp             TTSCCEEEEEEEEE
T ss_pred             CCCCcEEEEechhh
Confidence            00345666777665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	295
d1iuha_	183	2'-5' RNA ligase LigT {Thermus thermophilus [TaxId	99.63
d1jh6a_	181	tRNA splicing product Appr>p cyclic nucleotide pho	98.83
d2fsqa1	232	Putative phosphoesterase Atu0111 {Agrobacterium tu	96.86
d1iuha_	183	2'-5' RNA ligase LigT {Thermus thermophilus [TaxId	83.44

>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: 2'-5' RNA ligase LigT
domain: 2'-5' RNA ligase LigT
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=1.3e-15  Score=128.75  Aligned_cols=130  Identities=15%  Similarity=0.175  Sum_probs=106.7

Q ss_pred             cccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHHH
Q 040757           90 LPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLRQ  169 (295)
Q Consensus        90 YI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~~  169 (295)
                      ||++.+++++++.|.++.+.+... ...+|+.                    +++|||||.+.+.+..++++.+.++|++
T Consensus         4 Fial~~p~~~~~~l~~~~~~l~~~-~~~r~~~--------------------~~~lHiTL~flg~~~~~~~~~l~~~l~~   62 (183)
T d1iuha_           4 FYAVFLPEEVRAALVEAQTKVRPF-RGWKPVP--------------------PHQLHLTLLFLGERPEEELPDYLALGHR   62 (183)
T ss_dssp             EEEEECCHHHHHHHHHHHGGGTTC-TTEEECC--------------------GGGCEEEEEEEEECCGGGHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHcccc-cccccCC--------------------cccCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            899999999999998888877643 3467753                    6899999999999999999999999999


Q ss_pred             HHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHH------CCCCCCCCCCCCeeEeeeccC
Q 040757          170 RLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRL------HNLPEFYKDPRPHISLAWLLG  243 (295)
Q Consensus       170 ~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~------fg~p~~Y~~~~fHiSIAW~lg  243 (295)
                      ..+...+|.++++++++|+|..+++++|+ .+..   +.+.+|++.+.+++..      .|++...+++.||||||+...
T Consensus        63 ~~~~~~pf~l~~~~~~~f~~~~~~~v~~~-~~~~---~~~~~L~~~l~~~l~~~~~~~~~~~~~~~r~f~PHITlar~~~  138 (183)
T d1iuha_          63 LARLEAPFRARLRGTGYFPNEGTPRVWFA-KAEA---EGFLRLAEGLRAGVEELLGEEAVRIPGWDKPFKPHITLARRKA  138 (183)
T ss_dssp             HHHHSCCEEEEEEEEEEESSSSSCSEEEE-EEEC---HHHHHHHHHHHHHHHHHHGGGGGGSTTTTSCCCCEEEEEEESS
T ss_pred             HHhcCCCeEEEecccccCCCCCCcEEEEE-ecCC---hHHHHHHHHHHHHHHHHhhhhccCCCccCCCcCCCEEEEeEcC
Confidence            98888999999999999999999999998 4442   5566555555544432      578888899999999998644


Q ss_pred             C
Q 040757          244 D  244 (295)
Q Consensus       244 d  244 (295)
                      .
T Consensus       139 ~  139 (183)
T d1iuha_         139 P  139 (183)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1jh6a_ d.61.1.1 (A:) tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
domain: tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.83  E-value=5.8e-08  Score=80.73  Aligned_cols=117  Identities=10%  Similarity=0.057  Sum_probs=81.9

Q ss_pred             ccccccCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccccccHHHHHHHHH
Q 040757           89 HLPTVLIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIRVHQIDSIVAMLR  168 (295)
Q Consensus        89 hYI~~~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr~~qid~f~~~L~  168 (295)
                      |+|-..++.+..+.|..+++.++..+.. .                       .-+.||||.+.+.+..+.+...++.+ 
T Consensus         9 yslwl~P~~~~~~~l~~l~~~l~~~~~~-~-----------------------~~~pHiTL~~~~~~~~~~~~~~l~~~-   63 (181)
T d1jh6a_           9 YSVWALPDEESEPRFKKLMEALRSEFTG-P-----------------------RFVPHVTVAVSAYLTADEAKKMFESA-   63 (181)
T ss_dssp             EEEEEEECTTTHHHHHHHHHHHHHHHTC-C-----------------------CCCCCEEEEEEEEECHHHHHHHHHHH-
T ss_pred             EEEEEECCHHHHHHHHHHHHHHHHhhCC-C-----------------------CCCCeEEEeecCcCCHHHHHHHHHHH-
Confidence            3455556677788899999998876532 0                       13469999999998876666555444 


Q ss_pred             HHHhcCccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeec
Q 040757          169 QRLQSQRRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWL  241 (295)
Q Consensus       169 ~~l~~~~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~  241 (295)
                        ....++|.+.++++++|.+.  .++++. .+..  ..+|..|.+.+.+.+   + ...-+++.||||||+.
T Consensus        64 --~~~~~p~~~~~~~~~~~~~~--~~~v~~-~~~~--~~~L~~l~~~l~~~~---~-~~~~~~f~PHiTLa~~  125 (181)
T d1jh6a_          64 --CDGLKAYTATVDRVSTGTFF--FQCVFL-LLQT--TPEVMEAGEHCKNHF---N-CSTTTPYMPHLSLLYA  125 (181)
T ss_dssp             --HHTCBCEEEEEEEEEEEEET--TEEEEE-EECC--CHHHHHHHHHHHHHT---T-CCCCSCCCCEEEEECC
T ss_pred             --HhhCCCeEEEecccccCCCC--ceEEEE-ccCC--CHHHHHHHHHHHHhc---C-cccCCCCCCeEEEEec
Confidence              45568999999999998763  444443 5553  478888887765543   2 3334578999999985

>d2fsqa1 d.61.1.4 (A:6-237) Putative phosphoesterase Atu0111 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: Atu0111-like
domain: Putative phosphoesterase Atu0111
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.86  E-value=0.0043  Score=53.30  Aligned_cols=127  Identities=9%  Similarity=0.074  Sum_probs=72.5

Q ss_pred             cCCchhHHHHHHHHHHHhhhCCCceeecccccccccccCchhhhhhhcCCCceEEeccccccc-------------cccH
Q 040757           94 LIPLAPKKELAQFLKRVSSILPGIYVVDVDVPFTSLRKDDSELEQVAFGREFHISLGRTVPIR-------------VHQI  160 (295)
Q Consensus        94 ~~~~~~~~~L~~li~~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~~lHISLSr~~~lr-------------~~qi  160 (295)
                      +...+..+.|..+.+++.+..+.-+.+                  +..+..||+||--.+...             ...+
T Consensus        43 ~~~s~~~~~l~~~q~~l~~~~~~~~~~------------------~LP~sSfHMTLfd~~n~~~r~~~~wP~~l~~d~~~  104 (232)
T d2fsqa1          43 VEGSQTESAIVSTRQRFLDMPEASQLA------------------FTPVSSLHMTVFQGVIESRRALPYWPQTLPLDTPI  104 (232)
T ss_dssp             CTTSHHHHHHHHHHHHHHTSGGGGGEE------------------ECCGGGCEEEEEEEEETTCCSTTSSCTTSCTTCCH
T ss_pred             CCCchHHHHHHHHHHHHHhcCccccee------------------eCChhhhhHHHhcccccccccCCCCCccCCcccCH
Confidence            344567788888888888765432221                  123577999997443331             2346


Q ss_pred             HHHHHHHHHHHhcC---ccEEEEeCCeeeecCCCCceEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeE
Q 040757          161 DSIVAMLRQRLQSQ---RRYWIDFSKWEAFVNDDRTRTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHIS  237 (295)
Q Consensus       161 d~f~~~L~~~l~~~---~~F~l~~~~l~vf~N~e~tR~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiS  237 (295)
                      +.....+.+.+++.   ..|.+.+.+++      .. ..+..++.+.....|..+.+.+.+ +-.+++|..|. +.||||
T Consensus       105 ~~~~~~~~~rl~~~~~~~~~~~~~~~~~------~~-~v~L~p~~e~d~~~L~~~R~~l~~-l~gi~~~~h~~-Y~fHIT  175 (232)
T d2fsqa1         105 DAVTDYYRDRLSTFPTLPAFNMRVTGLR------PV-GMVMKGATAEDDSIVALWRDTFAD-FFGYRHPDHDT-YEFHIT  175 (232)
T ss_dssp             HHHHHHHHHHGGGCCCCCCCCEEEEEEE------TT-EEEEEESSHHHHHHHHHHHHHHHH-HHTCCCTTGGG-CCEEEE
T ss_pred             HHHHHHHHHHHhcCCCCcceEEEEeccc------cc-EEEEecCCHHHHHHHHHHHHHHHH-HhccCCCCCce-eEEEEE
Confidence            66666677777663   34655543321      11 122223332233445555555555 44566666544 899999


Q ss_pred             eeeccCCCch
Q 040757          238 LAWLLGDVSS  247 (295)
Q Consensus       238 IAW~lgd~~~  247 (295)
                      +|+.+....+
T Consensus       176 LaY~l~~l~~  185 (232)
T d2fsqa1         176 LSYIVSWFEP  185 (232)
T ss_dssp             CEEESSCBCG
T ss_pred             EEeccCCCCh
Confidence            9988655444

>d1iuha_ d.61.1.2 (A:) 2'-5' RNA ligase LigT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LigT-like
superfamily: LigT-like
family: 2'-5' RNA ligase LigT
domain: 2'-5' RNA ligase LigT
species: Thermus thermophilus [TaxId: 274]

Probab=83.44  E-value=1  Score=35.20  Aligned_cols=78  Identities=14%  Similarity=0.152  Sum_probs=37.1

Q ss_pred             eEEEEEEeccCChhhHHHHHHHHHHHHHHCCCCCCCCCCCCeeEeeeccCCCchH-HHHHHHHHHhhhcccccccceeeE
Q 040757          194 RTFLSLEVITGGLLEITKQIQVVNEVYRLHNLPEFYKDPRPHISLAWLLGDVSSS-LKRVVVEEMKRLSVESSLHKHFFS  272 (295)
Q Consensus       194 R~Fl~l~V~~~~~~~L~~L~~~vd~~l~~fg~p~~Y~~~~fHiSIAW~lgd~~~~-l~~~~~~l~~~~~~~~~~~~~~~~  272 (295)
                      |.|+++.+.+    ++.+.+..+-+.+....--..-.+..+||||+. +|+.+.+ +......+.+....     ...+.
T Consensus         2 RlFial~~p~----~~~~~l~~~~~~l~~~~~~r~~~~~~lHiTL~f-lg~~~~~~~~~l~~~l~~~~~~-----~~pf~   71 (183)
T d1iuha_           2 RLFYAVFLPE----EVRAALVEAQTKVRPFRGWKPVPPHQLHLTLLF-LGERPEEELPDYLALGHRLARL-----EAPFR   71 (183)
T ss_dssp             EEEEEEECCH----HHHHHHHHHHGGGTTCTTEEECCGGGCEEEEEE-EEECCGGGHHHHHHHHHHHHHH-----SCCEE
T ss_pred             eEEEEEcCCH----HHHHHHHHHHHHcccccccccCCcccCEEEEEc-CCCCCHHHHHHHHHHHHHHHhc-----CCCeE
Confidence            8999998853    333333222222211100011123456999984 4655543 33333333332211     13456


Q ss_pred             EEeceEEEe
Q 040757          273 CKFGGIHCK  281 (295)
Q Consensus       273 ~~v~~v~ck  281 (295)
                      +.++++.+-
T Consensus        72 l~~~~~~~f   80 (183)
T d1iuha_          72 ARLRGTGYF   80 (183)
T ss_dssp             EEEEEEEEE
T ss_pred             EEecccccC
Confidence            777777765