Citrus Sinensis ID: 040778

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLSQRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccHHHcccccccccccccHHHHHccccccccccccccccccccccccccHHHHHccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccccccccccccccccccEcccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccEEEcccccccccccccEEEEcccc
Coil and Loop (DISEMBL)
melkvsspkpaslsppdctsdpeekelsdeddddrnhkhrrretrsqslerdsLDQVYMRSYrkrnkpfenghsfrenesqaseswknynipplekdftakferrrpgfaslsrapldlsqrirgnntfygdlgpgrgrgrdsaswnqrdtrfssvdiasqilqpasmppsrfagrglpnisnsqnasfafglipgvpnggldtlpsiglqgtlrpplnsslnmgisrqRCRDfeergfclrgdmcpmehgvnrivvedvqv
Flexible Loop (DISEMBL)
melkvsspkpaslsppdctsdpeekelsdeddddrnhkhrrretrsqslerdsldqvYMRSYRkrnkpfenghsfrenesqaseswknynippLEKDFTAKFERRRPGfaslsrapldlsqrirgnntfygdlgpgrgrgrdsaswnqRDTRFSSVDIASQILQPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGFCLRgdmcpmehgvnrivvedvqv
Low Complexity Region (SEG)
MELKVSSPKPASLSPPDCTSdpeekelsdeddddrnhkhrrreTRSQSLERDSLDQVYMRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLSQRIRGNNTFYGDLGPgrgrgrDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV
Disordered region (IsUnstruct)
*******************************************************************************************************************************************************************************************SFAFGLIPGVPNGGLDTLPSIGLQGTL********NMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVV*****
Disordered Region (DISOPRED)
*****************************************************************************************************************************************************************************************************************************************FEERGFCLRGDMCPMEHGVNRIVVEDVQV
Disordered Region (DISEMBL)
*************************************************ERDSLDQVYMRSYRKRNKPFENG************SWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLSQRIRGNNTFYGDLGPGR***********RDTRFSSVDIASQILQPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV
Disordered Region (DISPRO)
*********************************************************************************************LEKDFTAKFER***************************************ASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLSQRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q9LVX1	908	Zinc finger CCCH domain-c	yes	no	0.889	0.256	0.564	5e-68
Q0JDM0	903	Zinc finger CCCH domain-c	yes	no	0.919	0.266	0.430	2e-43
Q6NZN0	1012	RNA-binding protein 26 OS	yes	no	0.167	0.043	0.522	2e-09
Q5T8P6	1007	RNA-binding protein 26 OS	yes	no	0.167	0.043	0.522	2e-09
Q2T9I5	1059	RNA-binding protein 26 OS	N/A	no	0.148	0.036	0.538	2e-09
Q5SFM8	1060	RNA-binding protein 27 OS	no	no	0.133	0.033	0.485	1e-05
Q9P2N5	1060	RNA-binding protein 27 OS	no	no	0.133	0.033	0.485	1e-05

>sp|Q9LVX1|C3H41_ARATH Zinc finger CCCH domain-containing protein 41 OS=Arabidopsis thaliana GN=At3g27700 PE=1 SV=1

 Score =  257 bits (657), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 149/264 (56%), Positives = 179/264 (67%), Gaps = 31/264 (11%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDD-RNHKHRRRE-TRSQSLERDSLDQVY 58
           MEL VSSPK + LSPPDC SDPEE+    E++DD RNHKHRR+E TRSQSLE+DS DQ +
Sbjct: 1   MELSVSSPKQSVLSPPDCMSDPEEEHEISEEEDDDRNHKHRRKEETRSQSLEQDSSDQAF 60

Query: 59  MRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLD 118
            R YRK  + +ENG+SF E+E                        +R  G  S  R   D
Sbjct: 61  SRPYRKNYRHYENGNSFSEHE------------------------KRSFGTGSGQRVQFD 96

Query: 119 LSQRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGL 178
            +QR+R N  F  D GPGRGRG +  SW QRD+RF+ VD++S ++Q  SM    F GRGL
Sbjct: 97  -NQRMRSNPMFSRDSGPGRGRG-NYGSWAQRDSRFNPVDLSSHMVQVGSMGQGMFGGRGL 154

Query: 179 PNISNSQNASFA-FGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEER 237
             +S +Q+A +  FG+IPGVPNGGLD      LQG+LRPPLN+ LNMGI RQRCRDFEER
Sbjct: 155 AGVSAAQSAPWPPFGMIPGVPNGGLDGFHH--LQGSLRPPLNAPLNMGIPRQRCRDFEER 212

Query: 238 GFCLRGDMCPMEHGVNRIVVEDVQ 261
           GFCLRGDMCPMEHG+NRIVV+DVQ
Sbjct: 213 GFCLRGDMCPMEHGMNRIVVDDVQ 236

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JDM0|C3H27_ORYSJ Zinc finger CCCH domain-containing protein 27 OS=Oryza sativa subsp. japonica GN=Os04g0394300 PE=2 SV=2

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/267 (43%), Positives = 164/267 (61%), Gaps = 26/267 (9%)

Query: 2   ELKVSSPKPASLSP-PDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           +++V SPK  + S   +  +D E+ E+SD+DDDDRNHKHR+RE R QS + ++ +Q    
Sbjct: 14  KIEVPSPKDENNSSNSEAATDNEDFEISDDDDDDRNHKHRKREARPQSFDENT-EQSPGG 72

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
             +KR+K      S  E                 +KDF  KF +RRPG  + SRAP  ++
Sbjct: 73  PLKKRHKISGGADSHGE----------------AQKDFFPKF-KRRPGAGAHSRAP-RVN 114

Query: 121 QRIRGNNTFYGDLGP-GRGRGRDSASWNQRDTRFSS---VDIASQIL-QPASMPPSRFAG 175
              R ++       P  RGRGR+ A W Q + RF++   +D ASQ+  Q     PS F G
Sbjct: 115 PSFRDSSASVAARAPMTRGRGRNGAPWAQHEPRFNTLEMIDFASQMASQGPPTHPSLFMG 174

Query: 176 RGLPNISNSQNASFA-FGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDF 234
             LP+  ++QN S+  +G +PG+PNG LD +  +G+QG ++P ++  +++G+ RQRCRDF
Sbjct: 175 PALPSGGSAQNGSWGPYGFMPGMPNGMLDPIHPLGMQGPIQPAISPLIDLGMPRQRCRDF 234

Query: 235 EERGFCLRGDMCPMEHGVNRIVVEDVQ 261
           EERGFCLRGDMCPMEHG+NRIVVED+Q
Sbjct: 235 EERGFCLRGDMCPMEHGLNRIVVEDMQ 261

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6NZN0|RBM26_MOUSE RNA-binding protein 26 OS=Mus musculus GN=Rbm26 PE=1 SV=2

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
           NS +   + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325

Mus musculus (taxid: 10090)

>sp|Q5T8P6|RBM26_HUMAN RNA-binding protein 26 OS=Homo sapiens GN=RBM26 PE=1 SV=3

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query: 219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
           NS +   + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325

Homo sapiens (taxid: 9606)

>sp|Q2T9I5|RBM26_XENLA RNA-binding protein 26 OS=Xenopus laevis GN=rbm26 PE=2 SV=2

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 33/39 (84%)

Query: 224 MGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
           + + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct: 326 LQMQKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 364

Xenopus laevis (taxid: 8355)

>sp|Q5SFM8|RBM27_MOUSE RNA-binding protein 27 OS=Mus musculus GN=Rbm27 PE=2 SV=3

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 29/35 (82%)

Query: 228 RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
           ++RCRD++ERGFC+ GD+C  +HG + +VV++V +
Sbjct: 276 KRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVAL 310

Mus musculus (taxid: 10090)

>sp|Q9P2N5|RBM27_HUMAN RNA-binding protein 27 OS=Homo sapiens GN=RBM27 PE=1 SV=2

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 29/35 (82%)

Query: 228 RQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
           ++RCRD++ERGFC+ GD+C  +HG + +VV++V +
Sbjct: 276 KRRCRDYDERGFCVLGDLCQFDHGNDPLVVDEVAL 310

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
359488670	948	PREDICTED: zinc finger CCCH domain-conta	0.992	0.274	0.778	1e-116
255567351	972	rrm/rnp domain, putative [Ricinus commun	0.992	0.267	0.770	1e-109
224059950	981	predicted protein [Populus trichocarpa]	0.984	0.262	0.729	1e-103
356573099	945	PREDICTED: zinc finger CCCH domain-conta	0.996	0.276	0.706	1e-100
356511690	922	PREDICTED: zinc finger CCCH domain-conta	0.996	0.283	0.698	2e-98
224141287	964	predicted protein [Populus trichocarpa]	0.950	0.258	0.690	3e-98
296087622	700	unnamed protein product [Vitis vinifera]	0.889	0.332	0.698	1e-97
449446871	901	PREDICTED: zinc finger CCCH domain-conta	0.984	0.286	0.683	8e-91
449489569	800	PREDICTED: zinc finger CCCH domain-conta	0.984	0.322	0.683	1e-90
297818368	934	RNA recognition motif-containing protein	0.889	0.249	0.564	1e-66

>gi|359488670|ref|XP_002273438.2| PREDICTED: zinc finger CCCH domain-containing protein 41-like [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/262 (77%), Positives = 230/262 (87%), Gaps = 2/262 (0%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           MELKVSSPKP+ LSP D  SDPEEKE+SDEDDDDRNHKHRRRETRSQSLERDSL+QV  R
Sbjct: 1   MELKVSSPKPSGLSPSDGESDPEEKEISDEDDDDRNHKHRRRETRSQSLERDSLEQVLSR 60

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
            YRKRNKPFENGHSFREN+SQ+S SWKNYNI P+EKDF+ KFE+RRPG A+ +RAPLDL+
Sbjct: 61  PYRKRNKPFENGHSFRENDSQSSGSWKNYNISPMEKDFSGKFEKRRPGLATFARAPLDLN 120

Query: 121 QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN 180
           QR R N +F GD GP RGRGRD  SWNQRD RFS VDIASQ++Q  S+PP  +AGRGLPN
Sbjct: 121 QRTRMNQSFSGDSGPVRGRGRDPGSWNQRDPRFSQVDIASQMVQ-GSIPPGLYAGRGLPN 179

Query: 181 ISNSQNASFA-FGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGF 239
           +SN+QNAS++ FGL+PG+PNG LD+L S+GLQGTLRPPL++SLN  I RQRCRDFEERGF
Sbjct: 180 VSNTQNASWSGFGLLPGIPNGALDSLHSLGLQGTLRPPLSTSLNKSIPRQRCRDFEERGF 239

Query: 240 CLRGDMCPMEHGVNRIVVEDVQ 261
           CLRGDMCPMEHGVNRIVVEDVQ
Sbjct: 240 CLRGDMCPMEHGVNRIVVEDVQ 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567351|ref|XP_002524655.1| rrm/rnp domain, putative [Ricinus communis] gi|223536016|gb|EEF37674.1| rrm/rnp domain, putative [Ricinus communis]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/262 (77%), Positives = 227/262 (86%), Gaps = 2/262 (0%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           MELKV+S KP  LSP DC SDPEEKE+SDEDDDDRNHKHRRRETRSQS ERDSL+ ++ R
Sbjct: 1   MELKVASVKPGGLSPSDCASDPEEKEISDEDDDDRNHKHRRRETRSQSTERDSLEPIFTR 60

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
           SYRKRNKPFENGH FRENESQ SE+WKN NI PLEKDF  KF++RRPG AS  R  +DL+
Sbjct: 61  SYRKRNKPFENGHPFRENESQGSETWKNSNIAPLEKDFI-KFDKRRPGMASFPRMNVDLN 119

Query: 121 QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN 180
           QRIR N  F+G+ GPGRGRGRDS SWNQRD+RFSSVDIASQ++Q  S+ P  FAGRGLPN
Sbjct: 120 QRIRSNQIFFGEPGPGRGRGRDSGSWNQRDSRFSSVDIASQMVQQGSITPGLFAGRGLPN 179

Query: 181 ISNSQNASF-AFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGF 239
           +SN+QN+S+  FGLIPG+P+GGLDTL  IGLQGTLRP +NSSLN+GI RQRCRDFEERGF
Sbjct: 180 VSNTQNSSWNTFGLIPGIPSGGLDTLHPIGLQGTLRPAVNSSLNIGIPRQRCRDFEERGF 239

Query: 240 CLRGDMCPMEHGVNRIVVEDVQ 261
           CLRGDMCPMEHG+NRIVVEDVQ
Sbjct: 240 CLRGDMCPMEHGINRIVVEDVQ 261

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059950|ref|XP_002300018.1| predicted protein [Populus trichocarpa] gi|222847276|gb|EEE84823.1| predicted protein [Populus trichocarpa]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 191/262 (72%), Positives = 212/262 (80%), Gaps = 4/262 (1%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           MELKVS  K   LSP +C SDPEEKE+SDE+DDDRNHKHRRRETRSQSLERDSL+ V  R
Sbjct: 1   MELKVSPLKTGGLSPAECISDPEEKEVSDEEDDDRNHKHRRRETRSQSLERDSLEPVSTR 60

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
            YRK NK FENGH FRENESQA E+WKNYN   LEKD+  KFER RP   SL R P+DL+
Sbjct: 61  PYRKHNKHFENGHPFRENESQARETWKNYNSVSLEKDYATKFERIRPDLMSLPRMPVDLN 120

Query: 121 QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN 180
           QRIR N TF GD GP RGRGR+  SW+QRD+RFSSV IASQ+   A + PS FAGRGL N
Sbjct: 121 QRIRLNQTFSGDPGPSRGRGREYGSWSQRDSRFSSVGIASQM---AHLGPSLFAGRGLAN 177

Query: 181 ISNSQNASF-AFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGF 239
           +SN Q+AS+ AFGL+P + NGGLDT+  IGLQGTLRP +NSSLNMGI  QRCRDFEERGF
Sbjct: 178 VSNVQSASWNAFGLMPRMSNGGLDTIHPIGLQGTLRPAVNSSLNMGIPHQRCRDFEERGF 237

Query: 240 CLRGDMCPMEHGVNRIVVEDVQ 261
           CLRGDMCP+EHGVNRIVVEDVQ
Sbjct: 238 CLRGDMCPLEHGVNRIVVEDVQ 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573099|ref|XP_003554702.1| PREDICTED: zinc finger CCCH domain-containing protein 41-like [Glycine max]

 Score =  369 bits (946), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 185/262 (70%), Positives = 215/262 (82%), Gaps = 1/262 (0%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           MELKVSSPKP S++P DC SDPEEKE+SD+DDDDRNHKHRRRE RSQSLERD  D V  R
Sbjct: 1   MELKVSSPKPESVAPSDCASDPEEKEVSDDDDDDRNHKHRRREARSQSLERDVSDPVISR 60

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
            ++KRNK F N H FRENESQA E+ K Y+    +K+F  KF+RRRPG AS  RAPLD+S
Sbjct: 61  PFKKRNKNFGNRHPFRENESQAFETLKTYSDATTDKEFYFKFDRRRPGLASAPRAPLDMS 120

Query: 121 QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN 180
           QR+R N +F GD G GRGRGR+S  WNQR++RF S+D+ASQ++   S+PPS +AGRGL N
Sbjct: 121 QRLRANQSFTGDPGIGRGRGRESGFWNQRESRFGSMDVASQVVPQGSIPPSLYAGRGLLN 180

Query: 181 ISNSQNASF-AFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGF 239
           +SN+QNAS+  FGLIP VPNGGLD L  +GLQGTLRPP+NSSLN+ I RQRCRDFEERGF
Sbjct: 181 VSNAQNASWNTFGLIPAVPNGGLDMLHPMGLQGTLRPPINSSLNVNIPRQRCRDFEERGF 240

Query: 240 CLRGDMCPMEHGVNRIVVEDVQ 261
           CLRGDMCPMEHGVNRIV+EDVQ
Sbjct: 241 CLRGDMCPMEHGVNRIVIEDVQ 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511690|ref|XP_003524556.1| PREDICTED: zinc finger CCCH domain-containing protein 41-like [Glycine max]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 183/262 (69%), Positives = 215/262 (82%), Gaps = 1/262 (0%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           MELKVSSPKP S++P D  SDPEEKE+SD+DDDDRNHKHRRRETRSQSLERD  D V  R
Sbjct: 1   MELKVSSPKPESVAPSDRASDPEEKEVSDDDDDDRNHKHRRRETRSQSLERDVSDPVISR 60

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
           S++KRNK F N H FRENESQA E+ K Y+    +K+F  KF+RRRPG AS  R PLD+S
Sbjct: 61  SFKKRNKNFGNRHPFRENESQAFETLKTYSDATTDKEFYFKFDRRRPGLASAPRTPLDMS 120

Query: 121 QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN 180
           QR+R N +F GD G GRGRGR+S  WNQR++RF S+D+ASQ++   S+PPS +AGRGLPN
Sbjct: 121 QRLRANQSFTGDPGVGRGRGRESGFWNQRESRFGSMDVASQMVPQGSIPPSLYAGRGLPN 180

Query: 181 ISNSQNASF-AFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGF 239
           +SN+QNA++  FGLIP VPNGGLD L  +GLQGTLR P++SSLN+ I RQRCRDFEERGF
Sbjct: 181 VSNAQNAAWNTFGLIPAVPNGGLDMLHPMGLQGTLRAPISSSLNVNIPRQRCRDFEERGF 240

Query: 240 CLRGDMCPMEHGVNRIVVEDVQ 261
           CLRGDMCPMEHGVNRIV+EDVQ
Sbjct: 241 CLRGDMCPMEHGVNRIVIEDVQ 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141287|ref|XP_002324006.1| predicted protein [Populus trichocarpa] gi|222867008|gb|EEF04139.1| predicted protein [Populus trichocarpa]

 Score =  363 bits (933), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 181/262 (69%), Positives = 203/262 (77%), Gaps = 13/262 (4%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           MELKVS+ K   LSP DC SDPEEKE+SDEDDDDRNHKHRRRE RSQSLERDSL+ V+ R
Sbjct: 1   MELKVSTLKTGGLSPADCISDPEEKEVSDEDDDDRNHKHRRREIRSQSLERDSLEPVFTR 60

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
            YRKRNKPFENG  ++EN+         YN  PLEK F  KFER RPG  SL R P+D +
Sbjct: 61  PYRKRNKPFENGQFYQEND---------YNSVPLEKGFATKFERIRPGLVSLPRMPVDWN 111

Query: 121 QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN 180
           QRIR N TFYGD G GRGRGR+  SW+Q D+RFS VDIASQ++       S F GRGL N
Sbjct: 112 QRIRSNQTFYGDPGLGRGRGREPVSWSQHDSRFSPVDIASQMVHQGQ---SLFTGRGLAN 168

Query: 181 ISNSQNASF-AFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGF 239
           +SN+Q+AS+ A+GL PG+PNGGLD L  IGLQ TLRP + SSLNMGI +QRCRDFEERGF
Sbjct: 169 VSNAQSASWNAYGLFPGIPNGGLDKLRPIGLQATLRPAVTSSLNMGIPQQRCRDFEERGF 228

Query: 240 CLRGDMCPMEHGVNRIVVEDVQ 261
           CLRGDMCPMEHGVNRIVVEDVQ
Sbjct: 229 CLRGDMCPMEHGVNRIVVEDVQ 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087622|emb|CBI34878.3| unnamed protein product [Vitis vinifera]

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 183/262 (69%), Positives = 207/262 (79%), Gaps = 29/262 (11%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           MELKVSSPKP+ LSP D  SDPEEKE+SDEDDDDRNHKHRRRETRSQSLERDSL+QV  R
Sbjct: 1   MELKVSSPKPSGLSPSDGESDPEEKEISDEDDDDRNHKHRRRETRSQSLERDSLEQVLSR 60

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
            YRKRNKPFENGHSFREN+SQ++                           + +RAPLDL+
Sbjct: 61  PYRKRNKPFENGHSFRENDSQST---------------------------TFARAPLDLN 93

Query: 121 QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN 180
           QR R N +F GD GP RGRGRD  SWNQRD RFS VDIASQ++Q  S+PP  +AGRGLPN
Sbjct: 94  QRTRMNQSFSGDSGPVRGRGRDPGSWNQRDPRFSQVDIASQMVQ-GSIPPGLYAGRGLPN 152

Query: 181 ISNSQNASFA-FGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGF 239
           +SN+QNAS++ FGL+PG+PNG LD+L S+GLQGTLRPPL++SLN  I RQRCRDFEERGF
Sbjct: 153 VSNTQNASWSGFGLLPGIPNGALDSLHSLGLQGTLRPPLSTSLNKSIPRQRCRDFEERGF 212

Query: 240 CLRGDMCPMEHGVNRIVVEDVQ 261
           CLRGDMCPMEHGVNRIVVEDVQ
Sbjct: 213 CLRGDMCPMEHGVNRIVVEDVQ 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446871|ref|XP_004141194.1| PREDICTED: zinc finger CCCH domain-containing protein 41-like [Cucumis sativus]

 Score =  339 bits (869), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 179/262 (68%), Positives = 209/262 (79%), Gaps = 4/262 (1%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           MELKVS PKP   S  D  SDPEEK++SD++DDDRNHKHRRRETRSQSLERD+ + V +R
Sbjct: 1   MELKVSYPKPGISS--DYVSDPEEKDISDDEDDDRNHKHRRRETRSQSLERDAREHV-LR 57

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
            Y KR+KPFENG SFR+N+SQA+E+WK++N P LEKD   KF++RR G     R   D +
Sbjct: 58  PYGKRSKPFENGRSFRDNDSQANEAWKSFNAPTLEKDTPGKFDKRRLGAVPGPRVVGDFN 117

Query: 121 QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN 180
           QRIRGN  F GDL  GRGRGRDS +WNQ D+RFS VDIASQI+   S PPS FAGRGLP+
Sbjct: 118 QRIRGNQAFSGDLSSGRGRGRDSGTWNQFDSRFSPVDIASQIVHHGSFPPSLFAGRGLPS 177

Query: 181 ISNSQNASF-AFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGF 239
           +S +Q A + AFGLI G+PN GL+T+  IGLQGTLRPP+N  LN+GI RQRCRDFEERGF
Sbjct: 178 VSTAQTAPWNAFGLISGIPNSGLETMHPIGLQGTLRPPINPPLNIGIPRQRCRDFEERGF 237

Query: 240 CLRGDMCPMEHGVNRIVVEDVQ 261
           CLRGDMCPMEHG+NRIVVEDVQ
Sbjct: 238 CLRGDMCPMEHGINRIVVEDVQ 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449489569|ref|XP_004158351.1| PREDICTED: zinc finger CCCH domain-containing protein 41-like [Cucumis sativus]

 Score =  338 bits (867), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 179/262 (68%), Positives = 209/262 (79%), Gaps = 4/262 (1%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDDRNHKHRRRETRSQSLERDSLDQVYMR 60
           MELKVS PKP   S  D  SDPEEK++SD++DDDRNHKHRRRETRSQSLERD+ + V +R
Sbjct: 1   MELKVSYPKPGISS--DYVSDPEEKDISDDEDDDRNHKHRRRETRSQSLERDAREHV-LR 57

Query: 61  SYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLDLS 120
            Y KR+KPFENG SFR+N+SQA+E+WK++N P LEKD   KF++RR G     R   D +
Sbjct: 58  PYGKRSKPFENGRSFRDNDSQANEAWKSFNAPTLEKDTPGKFDKRRLGAVPGPRVVGDFN 117

Query: 121 QRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGLPN 180
           QRIRGN  F GDL  GRGRGRDS +WNQ D+RFS VDIASQI+   S PPS FAGRGLP+
Sbjct: 118 QRIRGNQAFSGDLSSGRGRGRDSGTWNQFDSRFSPVDIASQIVHHGSFPPSLFAGRGLPS 177

Query: 181 ISNSQNASF-AFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEERGF 239
           +S +Q A + AFGLI G+PN GL+T+  IGLQGTLRPP+N  LN+GI RQRCRDFEERGF
Sbjct: 178 VSTAQTAPWNAFGLISGIPNSGLETMHPIGLQGTLRPPINPPLNIGIPRQRCRDFEERGF 237

Query: 240 CLRGDMCPMEHGVNRIVVEDVQ 261
           CLRGDMCPMEHG+NRIVVEDVQ
Sbjct: 238 CLRGDMCPMEHGINRIVVEDVQ 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818368|ref|XP_002877067.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297322905|gb|EFH53326.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 149/264 (56%), Positives = 179/264 (67%), Gaps = 31/264 (11%)

Query: 1   MELKVSSPKPASLSPPDCTSDPEEKELSDEDDDD-RNHKHRRRE-TRSQSLERDSLDQVY 58
           MEL VSSPK + LSPPDC SDPEE+    E++DD RNHKHRR+E TRSQSLE+DS DQ +
Sbjct: 1   MELSVSSPKQSVLSPPDCMSDPEEEHEISEEEDDDRNHKHRRKEETRSQSLEQDSSDQAF 60

Query: 59  MRSYRKRNKPFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLSRAPLD 118
            R YRK  + +ENG+SF ENE                        +R  G  S  R   D
Sbjct: 61  SRPYRKNYRHYENGNSFSENE------------------------KRSFGTGSGQRLQFD 96

Query: 119 LSQRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGRGL 178
            +QR+R N  F  D GPGRGRG +  SW QRD+RF+ VD++S ++Q  SM    F GRGL
Sbjct: 97  -NQRMRSNPMFSRDSGPGRGRG-NYGSWAQRDSRFNPVDLSSHMVQVGSMAQGMFGGRGL 154

Query: 179 PNISNSQNASFA-FGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFEER 237
             +S +Q+A +  FG+IPG+PNGGLD      LQG+LRPPLN+ LNMGI RQRCRDFEER
Sbjct: 155 AGVSAAQSAPWPPFGMIPGIPNGGLDGFHH--LQGSLRPPLNAPLNMGIPRQRCRDFEER 212

Query: 238 GFCLRGDMCPMEHGVNRIVVEDVQ 261
           GFCLRGDMCPMEHG+NRIVV+DVQ
Sbjct: 213 GFCLRGDMCPMEHGMNRIVVDDVQ 236

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2089094	908	AT3G27700 [Arabidopsis thalian	0.751	0.216	0.509	5.4e-43
UNIPROTKB|F1P7R9	980	RBM26 "Uncharacterized protein	0.167	0.044	0.522	3.8e-08
UNIPROTKB|J9NRX5	1007	RBM26 "Uncharacterized protein	0.167	0.043	0.522	4.1e-08
UNIPROTKB|Q5T8P6	1007	RBM26 "RNA-binding protein 26"	0.167	0.043	0.522	4.1e-08
UNIPROTKB|F1RP70	1007	RBM26 "Uncharacterized protein	0.167	0.043	0.522	4.1e-08
UNIPROTKB|F1MYG6	1012	RBM26 "Uncharacterized protein	0.167	0.043	0.522	4.1e-08
RGD|1308297	1008	RGD1308297 "similar to CG10084	0.167	0.043	0.522	8.3e-08
MGI|MGI:1921463	1012	Rbm26 "RNA binding motif prote	0.167	0.043	0.522	8.4e-08
ZFIN|ZDB-GENE-050706-50	1009	zgc:109736 "zgc:109736" [Danio	0.145	0.037	0.605	1.3e-07
UNIPROTKB|E1BQE2	964	RBM26 "Uncharacterized protein	0.141	0.038	0.567	3.2e-07

TAIR|locus:2089094 AT3G27700 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 5.4e-43, P = 5.4e-43
 Identities = 105/206 (50%), Positives = 132/206 (64%)

Query:    60 RSYRKRNKPFENGHSFRENES-QA-SESW-KNYNIPPLEKDFTAKFERRRPGFASLSRAP 116
             R+++ R K      S  ++ S QA S  + KNY        F+ + E+R  G  S  R  
Sbjct:    36 RNHKHRRKEETRSQSLEQDSSDQAFSRPYRKNYRHYENGNSFS-EHEKRSFGTGSGQRVQ 94

Query:   117 LDLSQRIRGNNTFYGDLGPXXXXXXDSASWNQRDTRFSSVDIASQILQPASMPPSRFAGR 176
              D +QR+R N  F  D GP      +  SW QRD+RF+ VD++S ++Q  SM    F GR
Sbjct:    95 FD-NQRMRSNPMFSRDSGPGRGRG-NYGSWAQRDSRFNPVDLSSHMVQVGSMGQGMFGGR 152

Query:   177 GLPNISNSQNASFA-FGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGISRQRCRDFE 235
             GL  +S +Q+A +  FG+IPGVPNGGLD      LQG+LRPPLN+ LNMGI RQRCRDFE
Sbjct:   153 GLAGVSAAQSAPWPPFGMIPGVPNGGLDGFHH--LQGSLRPPLNAPLNMGIPRQRCRDFE 210

Query:   236 ERGFCLRGDMCPMEHGVNRIVVEDVQ 261
             ERGFCLRGDMCPMEHG+NRIVV+DVQ
Sbjct:   211 ERGFCLRGDMCPMEHGMNRIVVDDVQ 236

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|F1P7R9 RBM26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query:   219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
             NS +   + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct:   282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9NRX5 RBM26 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 146 (56.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query:   219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
             NS +   + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct:   282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q5T8P6 RBM26 "RNA-binding protein 26" [Homo sapiens (taxid:9606)]

 Score = 146 (56.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query:   219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
             NS +   + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct:   282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010923 "negative regulation of phosphatase activity" evidence=IDA

UNIPROTKB|F1RP70 RBM26 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 146 (56.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query:   219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
             NS +   + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct:   282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1MYG6 RBM26 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 146 (56.5 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query:   219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
             NS +   + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct:   282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325

GO:0010923 "negative regulation of phosphatase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

RGD|1308297 RGD1308297 "similar to CG10084-PA" [Rattus norvegicus (taxid:10116)]

 Score = 146 (56.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query:   219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
             NS +   + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct:   282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1921463 Rbm26 "RNA binding motif protein 26" [Mus musculus (taxid:10090)]

 Score = 146 (56.5 bits), Expect = 8.4e-08, Sum P(2) = 8.4e-08
 Identities = 23/44 (52%), Positives = 35/44 (79%)

Query:   219 NSSLNMGISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
             NS +   + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct:   282 NSYVRPPMPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 325

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010923 "negative regulation of phosphatase activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-050706-50 zgc:109736 "zgc:109736" [Danio rerio (taxid:7955)]

 Score = 146 (56.5 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 23/38 (60%), Positives = 32/38 (84%)

Query:   225 GISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
             G  R+RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct:   298 GPPRKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 335

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E1BQE2 RBM26 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 142 (55.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 21/37 (56%), Positives = 32/37 (86%)

Query:   226 ISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVEDVQV 262
             + ++RCRD++E+GFC+RGDMCP +HG + +VVEDV +
Sbjct:   287 LPKKRCRDYDEKGFCMRGDMCPFDHGSDPVVVEDVNL 323

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00020684001 SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (422 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
smart00356	27	smart00356, ZnF_C3H1, zinc finger	0.002

>gnl|CDD|214632 smart00356, ZnF_C3H1, zinc finger

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 231 CRDFEERGFCLRGDMCPMEHG 251
           C+ F+ RG+C RGD C   H 
Sbjct: 7   CKFFK-RGYCPRGDRCKFAHP 26

Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	97.24
smart00356	27	ZnF_C3H1 zinc finger.	96.95
KOG2135	526	consensus Proteins containing the RNA recognition	96.71
COG5152	259	Uncharacterized conserved protein, contains RING a	92.45
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	90.9
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	87.57
KOG1595	528	consensus CCCH-type Zn-finger protein [General fun	85.82
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	84.49
KOG1677	332	consensus CCCH-type Zn-finger protein [General fun	83.03
COG5063	351	CTH1 CCCH-type Zn-finger protein [General function	82.95

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.24  E-value=4.6e-05  Score=47.72  Aligned_cols=25  Identities=40%  Similarity=0.816  Sum_probs=20.2

Q ss_pred             CCCCCCCccccccccCCCCCCCCCC
Q 040778          227 SRQRCRDFEERGFCLRGDMCPMEHG  251 (262)
Q Consensus       227 ~r~RCrDydekGyC~rGd~CpydHG  251 (262)
                      ++..|++|.+.|+|.+|+.|.|.|+
T Consensus         2 k~~~C~~f~~~g~C~~G~~C~f~H~   26 (27)
T PF00642_consen    2 KTKLCRFFMRTGTCPFGDKCRFAHG   26 (27)
T ss_dssp             TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred             ccccChhhccCCccCCCCCcCccCC
Confidence            4568999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>smart00356 ZnF_C3H1 zinc finger

Probab=96.95  E-value=0.00061  Score=40.74  Aligned_cols=22  Identities=41%  Similarity=1.025  Sum_probs=20.5

Q ss_pred             CCCCCccccccccCCCCCCCCCC
Q 040778          229 QRCRDFEERGFCLRGDMCPMEHG  251 (262)
Q Consensus       229 ~RCrDydekGyC~rGd~CpydHG  251 (262)
                      ..|++| ++|.|.+|+.|+|.|.
T Consensus         5 ~~C~~~-~~g~C~~g~~C~~~H~   26 (27)
T smart00356        5 ELCKFF-KRGYCPYGDRCKFAHP   26 (27)
T ss_pred             CcCcCc-cCCCCCCCCCcCCCCc
Confidence            479999 9999999999999996

>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]

Probab=96.71  E-value=0.00043  Score=68.89  Aligned_cols=33  Identities=39%  Similarity=0.672  Sum_probs=30.7

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCCCCccccc
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVE  258 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG~Dpvvv~  258 (262)
                      ....||.+|++.|||.+|++|||+||.++||++
T Consensus       210 ~s~~r~k~fee~g~~~r~el~p~~hg~~~vv~~  242 (526)
T KOG2135|consen  210 NSENRRKFFEEFGVLERGELCPTHHGCVPVVSK  242 (526)
T ss_pred             ccHHhhhhhHhhceeeeccccccccccceeEee
Confidence            456789999999999999999999999999987

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=92.45  E-value=0.044  Score=50.55  Aligned_cols=28  Identities=32%  Similarity=0.807  Sum_probs=23.9

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCCCC
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHGVN  253 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG~D  253 (262)
                      ...-.|.||.+-|||-.||+|.|-|.-+
T Consensus       139 ~qpdVCKdyk~TGYCGYGDsCKflH~R~  166 (259)
T COG5152         139 TQPDVCKDYKETGYCGYGDSCKFLHDRS  166 (259)
T ss_pred             cCcccccchhhcccccCCchhhhhhhhh
Confidence            3445799999999999999999999544

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=90.90  E-value=0.16  Score=45.80  Aligned_cols=31  Identities=26%  Similarity=0.599  Sum_probs=27.3

Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCCCCcc
Q 040778          225 GISRQRCRDFEERGFCLRGDMCPMEHGVNRI  255 (262)
Q Consensus       225 ~~~r~RCrDydekGyC~rGd~CpydHG~Dpv  255 (262)
                      ..+..-|..|.+-|+|..|..|.|-|+.+-.
T Consensus       174 ~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~  204 (332)
T KOG1677|consen  174 KYKTKLCPKFQKTGLCKYGSRCRFIHGEPED  204 (332)
T ss_pred             CCCCcCCCccccCCCCCCCCcCeecCCCccc
Confidence            3677889999999999999999999998733

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.57  E-value=0.16  Score=48.53  Aligned_cols=24  Identities=38%  Similarity=0.958  Sum_probs=21.6

Q ss_pred             CCCCCCCccccccccCCCCCCCCC
Q 040778          227 SRQRCRDFEERGFCLRGDMCPMEH  250 (262)
Q Consensus       227 ~r~RCrDydekGyC~rGd~CpydH  250 (262)
                      ..-.|.||+|-|||-.|+.|.|-|
T Consensus       185 qpDicKdykeTgycg~gdSckFlh  208 (313)
T KOG1813|consen  185 QPDICKDYKETGYCGYGDSCKFLH  208 (313)
T ss_pred             CchhhhhhHhhCcccccchhhhhh
Confidence            345799999999999999999987

>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=85.82  E-value=0.37  Score=48.83  Aligned_cols=23  Identities=48%  Similarity=1.084  Sum_probs=20.2

Q ss_pred             CCCCCccccccccCCCCCCCCCCC
Q 040778          229 QRCRDFEERGFCLRGDMCPMEHGV  252 (262)
Q Consensus       229 ~RCrDydekGyC~rGd~CpydHG~  252 (262)
                      .-|.+|.. |-|-+||+|.|-||.
T Consensus       237 tpCPefrk-G~C~rGD~CEyaHgv  259 (528)
T KOG1595|consen  237 TPCPEFRK-GSCERGDSCEYAHGV  259 (528)
T ss_pred             ccCccccc-CCCCCCCccccccce
Confidence            34999876 999999999999984

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=84.49  E-value=0.68  Score=27.30  Aligned_cols=18  Identities=39%  Similarity=0.922  Sum_probs=14.7

Q ss_pred             CCCccccccccCCCCCCCCCC
Q 040778          231 CRDFEERGFCLRGDMCPMEHG  251 (262)
Q Consensus       231 CrDydekGyC~rGd~CpydHG  251 (262)
                      |+.+-.   |..++.|+|.|.
T Consensus         2 Ck~~~~---C~~~~~C~f~HP   19 (19)
T PF14608_consen    2 CKFGPN---CTNGDNCPFSHP   19 (19)
T ss_pred             CcCcCC---CCCCCcCccCCc
Confidence            776544   999999999994

>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]

Probab=83.03  E-value=0.56  Score=42.28  Aligned_cols=31  Identities=29%  Similarity=0.762  Sum_probs=27.4

Q ss_pred             CCCCCCCCccccccccC-CCCCCCCCCCCccc
Q 040778          226 ISRQRCRDFEERGFCLR-GDMCPMEHGVNRIV  256 (262)
Q Consensus       226 ~~r~RCrDydekGyC~r-Gd~CpydHG~Dpvv  256 (262)
                      .+...|+.|.+.|+|.. |+.|.|.||.+-+-
T Consensus       130 ~kt~lc~~~~~~g~c~y~ge~crfah~~~e~r  161 (332)
T KOG1677|consen  130 YKTPLCRSFRKSGTCKYRGEQCRFAHGLEELR  161 (332)
T ss_pred             ccCCcceeeecCccccccCchhhhcCCccccc
Confidence            56778999999999999 99999999887554

>COG5063 CTH1 CCCH-type Zn-finger protein [General function prediction only]

Probab=82.95  E-value=0.64  Score=45.03  Aligned_cols=33  Identities=24%  Similarity=0.598  Sum_probs=28.5

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCCCCccccc
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHGVNRIVVE  258 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG~Dpvvv~  258 (262)
                      -+.+-|.+|+.-|||..|--|+|-||.|-.|-.
T Consensus       272 frTePcinwe~sGyc~yg~Rc~F~hgd~~~ie~  304 (351)
T COG5063         272 FRTEPCINWEKSGYCPYGLRCCFKHGDDSDIEM  304 (351)
T ss_pred             cccCCccchhhcccCccccccccccCChhhccc
Confidence            456789999999999999999999999976543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 41/271 (15%), Positives = 79/271 (29%), Gaps = 76/271 (28%)

Query: 17  DC--TSDPEEKELSDEDDDD-RNHKHRRRETR----------SQSLER---DSLDQVY-- 58
           DC    D  +  LS E+ D     K     T            + +++   + L   Y  
Sbjct: 34  DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93

Query: 59  -MRSYRKRNK----PFENGHSFRENESQASESWKNYNIPPLEKDFTAKFERRRPGFASLS 113
            M   +   +            R+     ++ +  YN+  L+      + + R     L 
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-----PYLKLRQALLELR 148

Query: 114 RAPLDLSQRIRGNNTFYGDLGPGRGRGRDSASWNQRDTRFSSVDIASQILQPASMPPSRF 173
            A          N    G LG G+       +W           +A  +     +   + 
Sbjct: 149 PAK---------NVLIDGVLGSGK-------TW-----------VALDVCLSYKV-QCKM 180

Query: 174 AGRG--LPNISNSQNASFAFGLIPGVPNGGLDTLPSIGLQGTLRPPLNSSLNMGIS-RQR 230
             +   L N+ N  +           P   L+ L  +  Q  + P   S  +   + + R
Sbjct: 181 DFKIFWL-NLKNCNS-----------PETVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLR 226

Query: 231 CRDFEERGFCLRGDMCPMEHGVNRIVVEDVQ 261
               +     LR  +    +    +V+ +VQ
Sbjct: 227 IHSIQAE---LRRLLKSKPYENCLLVLLNVQ 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	96.25
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	95.82
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	95.81
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	95.5
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	95.29
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	94.69
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	94.35
2rhk_C	72	Cleavage and polyadenylation specificity factor su	94.02
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	93.93
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	93.42
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	92.9
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	91.5
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	91.38
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	84.95
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	83.44
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	80.96

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=96.25  E-value=0.0034  Score=44.72  Aligned_cols=32  Identities=28%  Similarity=0.701  Sum_probs=26.4

Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCCCCccc
Q 040778          225 GISRQRCRDFEERGFCLRGDMCPMEHGVNRIV  256 (262)
Q Consensus       225 ~~~r~RCrDydekGyC~rGd~CpydHG~Dpvv  256 (262)
                      ..+...|+.|-..|.|..|+.|.|.|+.+.+.
T Consensus         9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~   40 (77)
T 1m9o_A            9 RYKTELCRTYSESGRCRYGAKCQFAHGLGELR   40 (77)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             CccchhCHHhhhCCCcCCCCCccCCCCChhhc
Confidence            35667899998889999999999999887554

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=95.82  E-value=0.0063  Score=46.83  Aligned_cols=25  Identities=40%  Similarity=0.975  Sum_probs=18.4

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCC
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHG  251 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG  251 (262)
                      .+...|+.| .+|.|.+|+.|+|.|.
T Consensus        11 ~k~~lC~~f-~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           11 KKRELCKFY-ITGFCARAENCPYMHG   35 (98)
T ss_dssp             CCCSBCTTT-TTTCCSCSTTCSSBSS
T ss_pred             CCCccCccc-ccCcCCCCCCCCCCCC
Confidence            456678877 4788888888888776

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=95.81  E-value=0.0015  Score=46.54  Aligned_cols=28  Identities=25%  Similarity=0.581  Sum_probs=0.0

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCCCC
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHGVN  253 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG~D  253 (262)
                      .+...|++|...|+|..|+.|.|.|+.+
T Consensus        48 ~k~~~C~~f~~~G~C~~G~~C~f~H~~~   75 (77)
T 1m9o_A           48 YKTELCHKFKLQGRCPYGSRCHFIHNPT   75 (77)
T ss_dssp             ----------------------------
T ss_pred             ccCCcccchhhCcCCCCcCcCCCCCCCC
Confidence            3456899999999999999999999864

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=95.50  E-value=0.0028  Score=45.70  Aligned_cols=30  Identities=30%  Similarity=0.825  Sum_probs=24.6

Q ss_pred             CCCCCCCccccccccCCCC-CCCCCCCCcccc
Q 040778          227 SRQRCRDFEERGFCLRGDM-CPMEHGVNRIVV  257 (262)
Q Consensus       227 ~r~RCrDydekGyC~rGd~-CpydHG~Dpvvv  257 (262)
                      +...|++| .+|-|.+|++ |+|.|..+.+.+
T Consensus         5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~~   35 (70)
T 3d2q_A            5 RLEVCREY-QRGNCNRGENDCRFAHPADSTMI   35 (70)
T ss_dssp             EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSCC
T ss_pred             cchhCHHH-hcCCCCCCCCCCCCccCcccccc
Confidence            34579999 8999999994 999998876544

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.29  E-value=0.0059  Score=44.64  Aligned_cols=28  Identities=25%  Similarity=0.654  Sum_probs=22.5

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCCCCc
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHGVNR  254 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG~Dp  254 (262)
                      .+...|+.|-. |.|.+|+.|+|.|..++
T Consensus         8 ~k~~~C~~fl~-G~C~~G~~C~fsH~~~~   35 (77)
T 2d9n_A            8 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM   35 (77)
T ss_dssp             CTTSBCHHHHT-TCCSCTTSSSSBCSCCT
T ss_pred             CcceeCHhHcc-CcCCCCCCCCCcccccc
Confidence            56678987776 99999999999998764

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.69  E-value=0.007  Score=45.42  Aligned_cols=27  Identities=26%  Similarity=0.635  Sum_probs=23.8

Q ss_pred             CCCCCCCccccccccCCCCCCCCCCCCc
Q 040778          227 SRQRCRDFEERGFCLRGDMCPMEHGVNR  254 (262)
Q Consensus       227 ~r~RCrDydekGyC~rGd~CpydHG~Dp  254 (262)
                      +-..|+.| ++|.|..|+.|.|.||.+-
T Consensus        19 k~~LC~~~-~~G~C~~G~~C~FAHG~~E   45 (69)
T 2d9m_A           19 YFSICDRY-MNGTCPEGNSCKFAHGNAE   45 (69)
T ss_dssp             CCSBCHHH-HHSCCSSCSSCSSBSSHHH
T ss_pred             CcccCccc-CcCCCCCCCccCCcCCHHH
Confidence            34789999 8999999999999999763

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=94.35  E-value=0.021  Score=40.88  Aligned_cols=28  Identities=29%  Similarity=0.775  Sum_probs=25.5

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCCCC
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHGVN  253 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG~D  253 (262)
                      .....|..|-..|||..|..||+.|-.|
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD   45 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDIS   45 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccCC
Confidence            4567899999999999999999999877

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=94.02  E-value=0.012  Score=42.95  Aligned_cols=28  Identities=25%  Similarity=0.654  Sum_probs=23.6

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCCCCc
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHGVNR  254 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG~Dp  254 (262)
                      .+...|+.|-. |.|.+|+.|+|.|..++
T Consensus        14 ~k~~vCk~fl~-G~C~~G~~C~fsH~~~~   41 (72)
T 2rhk_C           14 EKTVVCKHWLR-GLCKKGDQCEFLHEYDM   41 (72)
T ss_dssp             CCCSBCHHHHT-TCCCCGGGSSSBCSCCT
T ss_pred             CcCeeCHHHhc-CCCCCCCCCCCcccccc
Confidence            55678998777 99999999999998764

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=93.93  E-value=0.021  Score=43.09  Aligned_cols=31  Identities=35%  Similarity=0.733  Sum_probs=25.8

Q ss_pred             CCCCCCccccccccCCC-CCCCCCCCCcccccC
Q 040778          228 RQRCRDFEERGFCLRGD-MCPMEHGVNRIVVED  259 (262)
Q Consensus       228 r~RCrDydekGyC~rGd-~CpydHG~Dpvvv~d  259 (262)
                      -..|+||-. |-|.||+ .|+|.|-.+.+.|++
T Consensus         9 ~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~~~   40 (83)
T 3d2n_A            9 LEVCREFQR-GTCSRPDTECKFAHPSKSCQVEN   40 (83)
T ss_dssp             EEBCTTGGG-TCCCSCTTTCSSBCCCTTCCEET
T ss_pred             chhcHHHhc-CCCCCCCCCCCCcCCCccccccC
Confidence            457999988 9999997 999999988765543

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=93.42  E-value=0.019  Score=44.17  Aligned_cols=25  Identities=28%  Similarity=0.674  Sum_probs=22.6

Q ss_pred             CCCCCccccccccCCCCCCCCCCCC
Q 040778          229 QRCRDFEERGFCLRGDMCPMEHGVN  253 (262)
Q Consensus       229 ~RCrDydekGyC~rGd~CpydHG~D  253 (262)
                      ..|+.|..+|+|..|+.|+|.|...
T Consensus        37 ~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           37 FPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             SBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CcCcCcccCCcCCCCCCCcccCCCC
Confidence            4699999999999999999999865

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=92.90  E-value=0.021  Score=43.85  Aligned_cols=32  Identities=34%  Similarity=0.670  Sum_probs=26.9

Q ss_pred             CCCCCCccccccccCCC-CCCCCCCCCcccccCC
Q 040778          228 RQRCRDFEERGFCLRGD-MCPMEHGVNRIVVEDV  260 (262)
Q Consensus       228 r~RCrDydekGyC~rGd-~CpydHG~Dpvvv~dv  260 (262)
                      -+.|+||-. |-|.||+ .|+|.|-.+.+.|++.
T Consensus        17 ~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v~~~   49 (89)
T 2rpp_A           17 LEVCRQFQR-GTCSRSDEECKFAHPPKSCQVENG   49 (89)
T ss_dssp             ECBCHHHHH-TCCCCCTTTSSSBCCCSSSCCBTT
T ss_pred             hhhchHHhc-CCCCCCCCCCCCcCCCccccccCC
Confidence            467999987 9999998 9999999887666543

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=91.50  E-value=0.023  Score=49.63  Aligned_cols=23  Identities=30%  Similarity=0.651  Sum_probs=19.7

Q ss_pred             CCCCCccccccccCCCCCCCCCCC
Q 040778          229 QRCRDFEERGFCLRGDMCPMEHGV  252 (262)
Q Consensus       229 ~RCrDydekGyC~rGd~CpydHG~  252 (262)
                      ..|..| .||+|.+|+.|+|-|..
T Consensus        71 ~~C~ff-akG~C~~G~~C~y~H~l   93 (240)
T 3u1l_A           71 FFCLFF-AKGMCCLGPKCEYLHHI   93 (240)
T ss_dssp             SBCHHH-HTTCCSCGGGCSSBBSC
T ss_pred             eEcCcc-ccCCCCCCCCCCccCCC
Confidence            468877 67999999999999963

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.38  E-value=0.043  Score=42.39  Aligned_cols=31  Identities=29%  Similarity=0.746  Sum_probs=25.4

Q ss_pred             CCCCCCCCccccccccCCC-CCCCCCCCCcccc
Q 040778          226 ISRQRCRDFEERGFCLRGD-MCPMEHGVNRIVV  257 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd-~CpydHG~Dpvvv  257 (262)
                      .+...|++|-. |-|.||+ .|+|.|..+.+.+
T Consensus        18 ~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~   49 (98)
T 2e5s_A           18 DKLEVCREFQR-GNCARGETDCRFAHPADSTMI   49 (98)
T ss_dssp             SEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC
T ss_pred             hhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc
Confidence            34467999987 9999999 7999999876543

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.95  E-value=0.21  Score=36.38  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.6

Q ss_pred             CCCCCCccccccccCCCCCCCCCCCC
Q 040778          228 RQRCRDFEERGFCLRGDMCPMEHGVN  253 (262)
Q Consensus       228 r~RCrDydekGyC~rGd~CpydHG~D  253 (262)
                      ...|+.|-..|+|. |+.|+|.|...
T Consensus        38 ~~~C~~f~~~G~C~-~~~C~f~H~~~   62 (77)
T 2d9n_A           38 MPECYFYSKFGECS-NKECPFLHIDP   62 (77)
T ss_dssp             SCBCHHHHHTCCCC-CSSCSSBCCCT
T ss_pred             CCCCcccCCCCccC-CCCeeccCCCc
Confidence            34799998889999 99999999764

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=83.44  E-value=0.15  Score=36.57  Aligned_cols=27  Identities=26%  Similarity=0.468  Sum_probs=22.0

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCCCCc
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHGVNR  254 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG~Dp  254 (262)
                      .+...|.||-. |.|.+| .|+|-|....
T Consensus        40 ~~~~vC~~flk-G~C~r~-~C~y~H~~~~   66 (70)
T 3d2q_A           40 NTVTVCMDYIK-GRCSRE-KCKYFHPPAH   66 (70)
T ss_dssp             TEEEBCHHHHT-TCCCCT-TCCSBCCCHH
T ss_pred             CcceeccccCc-CCCCCC-CcCeeCCHHH
Confidence            34567999875 999999 9999998653

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=80.96  E-value=0.24  Score=37.27  Aligned_cols=27  Identities=26%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             CCCCCCCccccccccCCCCCCCCCCCCcc
Q 040778          227 SRQRCRDFEERGFCLRGDMCPMEHGVNRI  255 (262)
Q Consensus       227 ~r~RCrDydekGyC~rGd~CpydHG~Dpv  255 (262)
                      ....|.|| -||.|.|+ .|+|-|....+
T Consensus        42 ~~~vC~df-lkG~C~r~-~C~y~H~~~~l   68 (83)
T 3d2n_A           42 RVIACFDS-LKGRCSRE-NCKYLHPPPHL   68 (83)
T ss_dssp             EEECCHHH-HTTCCCCS-SCSSCCCCHHH
T ss_pred             ceeehhHh-hhccccCC-CcceeCChHHH
Confidence            34579998 77999999 99999976543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1rgoa1	36	g.66.1.1 (A:151-186) Butyrate response factor 2 (T	0.002
d1m9oa_	40	g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475	0.003

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (76), Expect = 0.002
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 231 CRDFEERGFCLRGDMCPMEHGVN 253
           CR FEE G C  G+ C   HG +
Sbjct: 9   CRPFEESGTCKYGEKCQFAHGFH 31

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 32.4 bits (74), Expect = 0.003
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 231 CRDFEERGFCLRGDMCPMEHGVN 253
           CR + E G C  G  C   HG+ 
Sbjct: 12  CRTYSESGRCRYGAKCQFAHGLG 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	97.42
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.33
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	97.32
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	97.06
d2cqea1	56	Zinc finger CCCH domain-containing protein C19orf7	90.31

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=6.2e-05  Score=49.21  Aligned_cols=32  Identities=28%  Similarity=0.701  Sum_probs=28.6

Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCCCCccc
Q 040778          225 GISRQRCRDFEERGFCLRGDMCPMEHGVNRIV  256 (262)
Q Consensus       225 ~~~r~RCrDydekGyC~rGd~CpydHG~Dpvv  256 (262)
                      ..+.+.|+.|.+.|+|..|+.|.|.||.+-|-
T Consensus         6 ~yKT~lC~~~~~~g~C~~G~~C~FAHg~~ELr   37 (40)
T d1m9oa_           6 RYKTELCRTYSESGRCRYGAKCQFAHGLGELR   37 (40)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGG
T ss_pred             ccccccChhhhcCCcCCCCCCCCCCCCHHHhc
Confidence            36778999999999999999999999988653

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=8.7e-06  Score=52.41  Aligned_cols=30  Identities=37%  Similarity=0.867  Sum_probs=27.0

Q ss_pred             CCCCCCCCccccccccCCCCCCCCCCCCcc
Q 040778          226 ISRQRCRDFEERGFCLRGDMCPMEHGVNRI  255 (262)
Q Consensus       226 ~~r~RCrDydekGyC~rGd~CpydHG~Dpv  255 (262)
                      -+.+.|+.|.+.|+|..|+.|.|.||.+-|
T Consensus         4 yKT~lC~~~~~~g~C~~G~~C~FAHg~~EL   33 (36)
T d1rgoa1           4 YKTELCRPFEESGTCKYGEKCQFAHGFHEL   33 (36)
T ss_dssp             TTSSBCHHHHHHSCCTTGGGCSSBSSGGGC
T ss_pred             cchhhCcchhcCCcCCCCCcCCCcCCHHHc
Confidence            567889999999999999999999998743

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=5.1e-05  Score=47.61  Aligned_cols=26  Identities=38%  Similarity=0.917  Sum_probs=22.8

Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCC
Q 040778          225 GISRQRCRDFEERGFCLRGDMCPMEHG  251 (262)
Q Consensus       225 ~~~r~RCrDydekGyC~rGd~CpydHG  251 (262)
                      .++++.|..|- +|||.+|++|+|-|.
T Consensus         3 ~kkkelCKfYv-qGyCtrgenC~ymH~   28 (29)
T d2cqea2           3 PKKRELCKFYI-TGFCARAENCPYMHG   28 (29)
T ss_dssp             SCCCSBCTTTT-TTCCSCSTTCSSBSS
T ss_pred             chhhhhhhhhe-eeeecCCcCcccccC
Confidence            47889999874 799999999999985

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=4e-05  Score=48.90  Aligned_cols=29  Identities=31%  Similarity=0.712  Sum_probs=26.6

Q ss_pred             CCCCCCCCCccccccccCCCCCCCCCCCC
Q 040778          225 GISRQRCRDFEERGFCLRGDMCPMEHGVN  253 (262)
Q Consensus       225 ~~~r~RCrDydekGyC~rGd~CpydHG~D  253 (262)
                      ..+.+.|+.|.+.|+|..|+.|.|.||.+
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~   33 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNAD   33 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCC
Confidence            36788999999999999999999999975

>d2cqea1 g.66.1.1 (A:458-513) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.03  Score=39.15  Aligned_cols=22  Identities=32%  Similarity=0.877  Sum_probs=20.3

Q ss_pred             CCCCccccccccCCCCCCCCCC
Q 040778          230 RCRDFEERGFCLRGDMCPMEHG  251 (262)
Q Consensus       230 RCrDydekGyC~rGd~CpydHG  251 (262)
                      -|..|++.+=|+-|+.|.|.|.
T Consensus         2 PCK~yHtg~kCy~gd~C~FSH~   23 (56)
T d2cqea1           2 PCKLYHTTGNCINGDDCMFSHD   23 (56)
T ss_dssp             BCSHHHHTSCCSSCTTCSSBCC
T ss_pred             CcceeecCCcccCCCcccccCC
Confidence            3999999999999999999994