Citrus Sinensis ID: 040816

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHcccccccEEcccccHHHHHHHHHHHHHHcccccccccccccHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
AVMLESQTIKHMVedgcadsvipllnVRGTILSMVIEYLKKHVEAktteddlknWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADmikgkspeeIRQTFhiqndftpeeeeeirtetpraf
Flexible Loop (DISEMBL)
AVMLESQTIKHmvedgcadsviplLNVRGTILSMVIEYLKKHVEaktteddlknWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQtfhiqndftpeeeeeirtetpraf
Low Complexity Region (SEG)
AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFtpeeeeeirtetprAF
Disordered region (IsUnstruct)
*********KHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIK*********************************
Disordered Region (DISOPRED)
A*MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKT*EDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF
Disordered Region (DISEMBL)
AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF****************
Disordered Region (DISPRO)
AV**ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
O49484	152	SKP1-like protein 11 OS=A	yes	no	1.0	0.842	0.641	2e-40
Q9LNT9	163	SKP1-like protein 4 OS=Ar	no	no	1.0	0.785	0.564	2e-40
Q39255	160	SKP1-like protein 1A OS=A	no	no	0.890	0.712	0.64	4e-40
O65674	152	SKP1-like protein 12 OS=A	yes	no	1.0	0.842	0.618	5e-39
Q9FHW7	171	SKP1-like protein 1B OS=A	no	no	0.890	0.666	0.592	5e-39
Q9SL93	163	SKP1-like protein 3 OS=Ar	no	no	1.0	0.785	0.557	2e-38
Q9M1X5	154	SKP1-like protein 13 OS=A	no	no	1.0	0.831	0.582	2e-34
Q9LSX9	153	SKP1-like protein 9 OS=Ar	no	no	0.937	0.784	0.577	1e-33
O81057	149	SKP1-like protein 14 OS=A	no	no	0.992	0.852	0.550	5e-33
Q9LSX8	152	SKP1-like protein 10 OS=A	no	no	0.976	0.822	0.562	7e-33

>sp|O49484|ASK11_ARATH SKP1-like protein 11 OS=Arabidopsis thaliana GN=ASK11 PE=1 SV=1

 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 84/131 (64%), Positives = 97/131 (74%), Gaps = 3/131 (2%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHV--EAK-TTEDDLKNWDV 57
           AV ++SQTI HMVED C    IPL NV   IL  VIEY KKH   EA   +E+DL NWD 
Sbjct: 21  AVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHVDEANPISEEDLNNWDE 80

Query: 58  DFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEE 117
            F  L Q T+F+L++AANYL+IKSLLDL CQTVADMIKGK+PEEIR TF+I+NDFTPEEE
Sbjct: 81  KFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEE 140

Query: 118 EEIRTETPRAF 128
           E +R E   AF
Sbjct: 141 EAVRKENQWAF 151

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LNT9|ASK4_ARATH SKP1-like protein 4 OS=Arabidopsis thaliana GN=ASK4 PE=1 SV=1

 Score =  163 bits (413), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 79/140 (56%), Positives = 100/140 (71%), Gaps = 12/140 (8%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA------------KTT 48
           AV ++SQTIKHM+ED CAD+ IPL NV G IL+ VIEY KKHVEA               
Sbjct: 23  AVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAE 82

Query: 49  EDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHI 108
            D+LKNWD +F K+ Q TLFDL++AANYL+I  LLDL C+ VAD ++GK+PE++R  F+I
Sbjct: 83  NDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNI 142

Query: 109 QNDFTPEEEEEIRTETPRAF 128
           +ND+TPEEE E+R E   AF
Sbjct: 143 KNDYTPEEEAEVRNENKWAF 162

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39255|SKP1A_ARATH SKP1-like protein 1A OS=Arabidopsis thaliana GN=SKP1A PE=1 SV=1

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/125 (64%), Positives = 95/125 (76%), Gaps = 11/125 (8%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAK-----------TTE 49
           AV LESQTI HMVED C D+ +PL NV   IL+ VIEY K+HVEA            T++
Sbjct: 21  AVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80

Query: 50  DDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQ 109
           DDLK WD DF K+ Q TLF+L++AANYL+IK+LLDL CQTVADMIKGK+PEEIR TF+I+
Sbjct: 81  DDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140

Query: 110 NDFTP 114
           NDFTP
Sbjct: 141 NDFTP 145

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.

Arabidopsis thaliana (taxid: 3702)

>sp|O65674|ASK12_ARATH SKP1-like protein 12 OS=Arabidopsis thaliana GN=ASK12 PE=1 SV=1

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/131 (61%), Positives = 95/131 (72%), Gaps = 3/131 (2%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKK-HVEAKT--TEDDLKNWDV 57
           AV ++SQTI HMVED C    IPL NV   IL  VIEY KK HV+     +E+DL  WD 
Sbjct: 21  AVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEANPISEEDLNKWDE 80

Query: 58  DFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEE 117
            F  L Q T+F+L++AANYL+IKSL DL CQTVADMIKGK+PEEIR TF+I+NDFTPEEE
Sbjct: 81  KFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDFTPEEE 140

Query: 118 EEIRTETPRAF 128
           E +R E   AF
Sbjct: 141 EAVRKENQWAF 151

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1 (By similarity). Plays a role during early flowers reproductive development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHW7|SKP1B_ARATH SKP1-like protein 1B OS=Arabidopsis thaliana GN=SKP1B PE=1 SV=1

 Score =  159 bits (401), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 96/135 (71%), Gaps = 21/135 (15%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAK-------------- 46
           AV LESQTIKHM+ED C D+ IPL NV   ILS VIEY K+HVEA               
Sbjct: 22  AVALESQTIKHMIEDDCTDNGIPLPNVTSKILSKVIEYCKRHVEAAEKSETTADAAAATT 81

Query: 47  -------TTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSP 99
                  ++++DLK WD +F K+ Q TLFDL++AANYL+IK LLDL CQTVADMIKGK+P
Sbjct: 82  TTTVASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTP 141

Query: 100 EEIRQTFHIQNDFTP 114
           EEIR+TF+I+NDFTP
Sbjct: 142 EEIRKTFNIKNDFTP 156

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1. SCF(UFO) is required for vegetative and floral organ development as well as for male gametogenesis. SCF(TIR1) is involved in auxin signaling pathway. SCF(COI1) regulates responses to jasmonates. SCF(EID1) and SCF(AFR) are implicated in phytochrome A light signaling. SCF(ADO1), SCF(ADO2), SCF(ADO3) are related to the circadian clock. SCF(ORE9) seems to be involved in senescence. SCF(EBF1/EBF2) may regulate ethylene signaling. Plays a role during embryogenesis and early postembryonic development, especially during cell elongation and division. Contributes to the correct chromosome segregation during tetrad formation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SL93|ASK3_ARATH SKP1-like protein 3 OS=Arabidopsis thaliana GN=ASK3 PE=1 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 78/140 (55%), Positives = 96/140 (68%), Gaps = 12/140 (8%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA------------KTT 48
           AV +ESQTIKHM+ED C D+ IPL NV G IL+ VIEY KKHVEA             T 
Sbjct: 23  AVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTE 82

Query: 49  EDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHI 108
             +LK WD DF K+   TLFDLL AANYL+I  LLDL C+ VAD ++GK+P ++R+ F+I
Sbjct: 83  NHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNI 142

Query: 109 QNDFTPEEEEEIRTETPRAF 128
           +ND+TPEEE E+R E   AF
Sbjct: 143 KNDYTPEEEAEVRNENRWAF 162

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1X5|ASK13_ARATH SKP1-like protein 13 OS=Arabidopsis thaliana GN=ASK13 PE=1 SV=1

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/134 (58%), Positives = 96/134 (71%), Gaps = 6/134 (4%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKT----TEDDLKNWD 56
           AV ++SQTI HM+ED C  + +P+ NV G ILS VIEY KKHV + +    ++D+LK WD
Sbjct: 20  AVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEESKDELKKWD 79

Query: 57  VDFAKL--GQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTP 114
            +F K      TLFD+++AANYL+IK LLDL CQTVADMI GK P+EIR    I+NDFTP
Sbjct: 80  AEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDFTP 139

Query: 115 EEEEEIRTETPRAF 128
           EEEEEIR E   AF
Sbjct: 140 EEEEEIRKENQWAF 153

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX9|ASK9_ARATH SKP1-like protein 9 OS=Arabidopsis thaliana GN=ASK9 PE=1 SV=1

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 89/123 (72%), Gaps = 3/123 (2%)

Query: 9   IKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKH-VEAKT--TEDDLKNWDVDFAKLGQD 65
           I HM E+ C D+ IPL NV G IL+MVIEY  KH V+A    ++DDLK WD +F +    
Sbjct: 30  IAHMSENDCTDNGIPLPNVTGKILAMVIEYCNKHHVDAANPCSDDDLKKWDKEFMEKDTS 89

Query: 66  TLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETP 125
           T+FDL+ AANYL+IKSL DL CQTVA++IKG +PE+IR+ F+I+ND TPEEE  IR E  
Sbjct: 90  TIFDLIKAANYLNIKSLFDLACQTVAEIIKGNTPEQIREFFNIENDLTPEEEAAIRRENK 149

Query: 126 RAF 128
            AF
Sbjct: 150 WAF 152

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|O81057|ASK14_ARATH SKP1-like protein 14 OS=Arabidopsis thaliana GN=ASK14 PE=1 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/129 (55%), Positives = 90/129 (69%), Gaps = 2/129 (1%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDF- 59
           AV  + + ++HM+ED C  + +PL NV G ILS+V+EY KKHV      D+ K WD +F 
Sbjct: 21  AVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHV-VDEESDEFKTWDEEFM 79

Query: 60  AKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEE 119
            K  Q T+F LL+AANYL+IK LLDL  QTVAD IK K+PEEIR+ F+I+NDFTPEEE  
Sbjct: 80  KKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDFTPEEEAA 139

Query: 120 IRTETPRAF 128
           +R E   AF
Sbjct: 140 VRKENAWAF 148

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSX8|ASK10_ARATH SKP1-like protein 10 OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=1

 Score =  139 bits (349), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 89/128 (69%), Gaps = 3/128 (2%)

Query: 4   LESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKH-VEAKT--TEDDLKNWDVDFA 60
            + QTI HM ED C D+ IPL  V G IL MVIEY  KH V+A    +++DLK WD +F 
Sbjct: 24  CQCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKHHVDAANPCSDEDLKKWDKEFM 83

Query: 61  KLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEI 120
           +  Q T+FDL+MAANYL+IKSLLDL CQTVADMIK  + E  R+ F+I+ND+T EEEE +
Sbjct: 84  EKYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDYTHEEEEAV 143

Query: 121 RTETPRAF 128
           R E    F
Sbjct: 144 RRENQWGF 151

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Together with CUL1, RBX1 and a F-box protein, it forms a SCF E3 ubiquitin ligase complex. The functional specificity of this complex depends of the type of F-box protein. In the SCF complex, it serves as an adapter that links the F-box protein to CUL1.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
227184175	158	SKP1-like protein [Citrus maxima]	0.992	0.803	0.696	2e-46
225428047	155	PREDICTED: SKP1-like protein 1A [Vitis v	0.992	0.819	0.689	2e-45
449456839	155	PREDICTED: SKP1-like protein 1B-like [Cu	0.992	0.819	0.643	2e-42
449495074	155	PREDICTED: SKP1-like protein 1A-like [Cu	0.992	0.819	0.643	2e-42
356496612	155	PREDICTED: SKP1-like protein 1A-like [Gl	0.890	0.735	0.731	2e-42
357502745	156	SKP1-like protein [Medicago truncatula]	1.0	0.820	0.699	4e-42
255625783	155	unknown [Glycine max]	0.890	0.735	0.722	5e-42
84579465	203	SKP1-like protein [Silene latifolia]	0.976	0.615	0.626	6e-42
359806806	155	uncharacterized protein LOC100798104 [Gl	0.890	0.735	0.714	8e-42
169647575	154	SKP1-like protein 2 [Petunia x hybrida]	0.890	0.740	0.705	2e-41

>gi|227184175|gb|ACP20181.1| SKP1-like protein [Citrus maxima]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/135 (69%), Positives = 108/135 (80%), Gaps = 8/135 (5%)

Query: 2   VMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA--------KTTEDDLK 53
           V LESQTIKH VED CAD+VIPL NV  TILS VIEY KKHVEA        K+T DDLK
Sbjct: 23  VALESQTIKHTVEDDCADTVIPLPNVTSTILSKVIEYCKKHVEAGSGDKKDDKSTVDDLK 82

Query: 54  NWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFT 113
            WD DF K+ Q+TLFDL++AANYL+IK LLDL CQTVADMIKGK+PEEIR+TF+I+NDF+
Sbjct: 83  TWDADFVKVDQNTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFS 142

Query: 114 PEEEEEIRTETPRAF 128
           P+EEEE+R E   AF
Sbjct: 143 PDEEEEVRRENQWAF 157

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428047|ref|XP_002279232.1| PREDICTED: SKP1-like protein 1A [Vitis vinifera] gi|147820987|emb|CAN73136.1| hypothetical protein VITISV_023042 [Vitis vinifera]

 Score =  187 bits (474), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 91/132 (68%), Positives = 105/132 (79%), Gaps = 5/132 (3%)

Query: 2   VMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTE-----DDLKNWD 56
           V +ESQTIKHM+EDGCAD+ IPL NV   IL+ VIEY KKHVE    E     D+LK WD
Sbjct: 23  VAVESQTIKHMIEDGCADNAIPLPNVTSKILAKVIEYCKKHVETPKAEEHAVNDELKAWD 82

Query: 57  VDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEE 116
            DF K+ Q TLFDL++AANYLDIKSLLDL CQTVADMIKGK+PEEIR+TF+I+NDFTPEE
Sbjct: 83  ADFVKVDQATLFDLILAANYLDIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPEE 142

Query: 117 EEEIRTETPRAF 128
           EE++R E   AF
Sbjct: 143 EEDVRRENQWAF 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456839|ref|XP_004146156.1| PREDICTED: SKP1-like protein 1B-like [Cucumis sativus]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 103/132 (78%), Gaps = 5/132 (3%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKT-----TEDDLKNW 55
           AV L+SQTI+HM+ED CA + IPL NV   IL+ VI+Y +KHV+A +     +EDDLK W
Sbjct: 22  AVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVDASSADPLPSEDDLKTW 81

Query: 56  DVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPE 115
           D DF  + Q TLFDL++AANYLD+KSLLDL CQTVADMIKGK PEEIR+TF+I+NDFTP 
Sbjct: 82  DRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKGKKPEEIRKTFNIKNDFTPA 141

Query: 116 EEEEIRTETPRA 127
           EEEE+R E   A
Sbjct: 142 EEEEVRRENQWA 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495074|ref|XP_004159727.1| PREDICTED: SKP1-like protein 1A-like [Cucumis sativus]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 103/132 (78%), Gaps = 5/132 (3%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKT-----TEDDLKNW 55
           AV L+SQTI+HM+ED CA + IPL NV   IL+ VI+Y +KHV+A +     +EDDLK W
Sbjct: 22  AVALQSQTIRHMIEDNCAHNGIPLPNVNSKILAKVIQYCRKHVDASSADPLPSEDDLKTW 81

Query: 56  DVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPE 115
           D DF  + Q TLFDL++AANYLD+KSLLDL CQTVADMIKGK PEEIR+TF+I+NDFTP 
Sbjct: 82  DRDFVNVDQATLFDLILAANYLDVKSLLDLTCQTVADMIKGKKPEEIRKTFNIKNDFTPA 141

Query: 116 EEEEIRTETPRA 127
           EEEE+R E   A
Sbjct: 142 EEEEVRRENQWA 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496612|ref|XP_003517160.1| PREDICTED: SKP1-like protein 1A-like [Glycine max]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 98/119 (82%), Gaps = 5/119 (4%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA-----KTTEDDLKNW 55
           AV LESQTIKHM+ED CADS IPL NV   IL+ VIEY KKHVEA     K +EDDLK W
Sbjct: 22  AVALESQTIKHMIEDDCADSGIPLPNVTSKILAKVIEYCKKHVEAANPEDKPSEDDLKAW 81

Query: 56  DVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTP 114
           D DF K+ Q TLFDL++AANYL+IKSLLDL CQTVADMIKGK+PEEIR+TF+I+NDFTP
Sbjct: 82  DADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357502745|ref|XP_003621661.1| SKP1-like protein [Medicago truncatula] gi|355496676|gb|AES77879.1| SKP1-like protein [Medicago truncatula]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 93/133 (69%), Positives = 110/133 (82%), Gaps = 5/133 (3%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA-----KTTEDDLKNW 55
           AV LESQTIKHM+ED C D+ IP+ NV G IL+ VIEY KKHV+A     K +EDDLKNW
Sbjct: 23  AVALESQTIKHMIEDDCTDNGIPVPNVTGQILAKVIEYCKKHVDAASSDEKPSEDDLKNW 82

Query: 56  DVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPE 115
           D +F K+ QDTLFDL++AANYL+IKSLLDL CQ+VADMIKGK+PEEIR+TF+I+NDFTPE
Sbjct: 83  DAEFVKVDQDTLFDLILAANYLNIKSLLDLTCQSVADMIKGKTPEEIRKTFNIKNDFTPE 142

Query: 116 EEEEIRTETPRAF 128
           EEEE+R E   AF
Sbjct: 143 EEEEVRRENQWAF 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255625783|gb|ACU13236.1| unknown [Glycine max]

 Score =  175 bits (443), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 86/119 (72%), Positives = 98/119 (82%), Gaps = 5/119 (4%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA-----KTTEDDLKNW 55
           AV +ESQTIKHMVED CADS IPL NV   IL+ VIEY KKHVEA     K +ED+LK W
Sbjct: 22  AVAVESQTIKHMVEDNCADSGIPLPNVTSKILAKVIEYCKKHVEANCADEKPSEDELKAW 81

Query: 56  DVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTP 114
           D DF K+ Q TLFDL++AANYL+IKSLLDL CQTVADMIKGK+PEEIR+TF+I+NDFTP
Sbjct: 82  DADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|84579465|dbj|BAE72120.1| SKP1-like protein [Silene latifolia]

 Score =  175 bits (443), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 101/134 (75%), Gaps = 9/134 (6%)

Query: 4   LESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTT---------EDDLKN 54
           L+SQTIKHM+ED CAD+ IPL N+   IL  VIEY +KHVEA  T          D LK 
Sbjct: 69  LQSQTIKHMIEDDCADNAIPLPNITAYILDKVIEYCEKHVEASHTYTPSDTPSPADQLKK 128

Query: 55  WDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTP 114
           WD +FAK+ QDTLFD+++AANYL+IK LLDL CQTVA+M+KGK+PEEIR+TFHI ND+TP
Sbjct: 129 WDAEFAKVDQDTLFDIMLAANYLNIKGLLDLTCQTVANMMKGKTPEEIRETFHIINDYTP 188

Query: 115 EEEEEIRTETPRAF 128
           EEEEE+R     AF
Sbjct: 189 EEEEEVRRGIQWAF 202

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806806|ref|NP_001241052.1| uncharacterized protein LOC100798104 [Glycine max] gi|255641709|gb|ACU21125.1| unknown [Glycine max]

 Score =  174 bits (442), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 98/119 (82%), Gaps = 5/119 (4%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA-----KTTEDDLKNW 55
           AV +ESQTIKHM+ED CADS IPL NV   IL+ VIEY KKHVEA     K +ED+LK W
Sbjct: 22  AVAVESQTIKHMIEDNCADSGIPLPNVTSKILAKVIEYCKKHVEANCADEKPSEDELKAW 81

Query: 56  DVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTP 114
           D DF K+ Q TLFDL++AANYL+IKSLLDL CQTVADMIKGK+PEEIR+TF+I+NDFTP
Sbjct: 82  DADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169647575|gb|ACA61784.1| SKP1-like protein 2 [Petunia x hybrida] gi|253796268|gb|ACT35738.1| SKP1-like 1 [Petunia x hybrida]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/119 (70%), Positives = 99/119 (83%), Gaps = 5/119 (4%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA-----KTTEDDLKNW 55
           +V +ESQTIKHM+ED CADS IPL NV   IL+ VIEY K+HVEA     K TEDDLK++
Sbjct: 21  SVAVESQTIKHMIEDDCADSSIPLPNVTSQILAKVIEYCKRHVEASKSEDKATEDDLKSF 80

Query: 56  DVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTP 114
           D DF K+ Q TLFDL++AANYL+IKSLLDL CQTVADMIKGK+PEEIR+TF+I+NDFTP
Sbjct: 81  DADFVKVDQSTLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTP 139

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2165825	171	ASK2 "AT5G42190" [Arabidopsis	0.546	0.409	0.671	6.4e-37
TAIR|locus:2204435	160	SKP1 "AT1G75950" [Arabidopsis	0.875	0.7	0.634	6.5e-35
TAIR|locus:2124281	152	SK11 "AT4G34210" [Arabidopsis	0.875	0.736	0.643	8.5e-33
TAIR|locus:2139504	152	SK12 "AT4G34470" [Arabidopsis	0.875	0.736	0.634	9.8e-32
TAIR|locus:2198621	163	SK4 "AT1G20140" [Arabidopsis t	0.875	0.687	0.556	6.9e-31
TAIR|locus:2080532	154	SK13 "AT3G60010" [Arabidopsis	0.875	0.727	0.593	7.9e-30
TAIR|locus:2050281	163	SK3 "AT2G25700" [Arabidopsis t	0.875	0.687	0.556	1e-29
TAIR|locus:2080542	153	SK5 "AT3G60020" [Arabidopsis t	0.851	0.712	0.568	3.9e-28
TAIR|locus:2093094	152	SK10 "AT3G21860" [Arabidopsis	0.843	0.710	0.576	6.4e-28
TAIR|locus:2056956	149	SK14 "AT2G03170" [Arabidopsis	0.867	0.744	0.548	1.7e-27

TAIR|locus:2165825 ASK2 "AT5G42190" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
 Identities = 47/70 (67%), Positives = 61/70 (87%)

Query:    43 VEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEI 102
             V + ++++DLK WD +F K+ Q TLFDL++AANYL+IK LLDL CQTVADMIKGK+PEEI
Sbjct:    85 VASGSSDEDLKTWDSEFIKVDQGTLFDLILAANYLNIKGLLDLTCQTVADMIKGKTPEEI 144

Query:   103 RQTFHIQNDF 112
             R+TF+I+NDF
Sbjct:   145 RKTFNIKNDF 154

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=NAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;RCA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0009793 "embryo development ending in seed dormancy" evidence=IGI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2204435 SKP1 "AT1G75950" [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 78/123 (63%), Positives = 93/123 (75%)

Query:     1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAK-----------TTE 49
             AV LESQTI HMVED C D+ +PL NV   IL+ VIEY K+HVEA            T++
Sbjct:    21 AVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80

Query:    50 DDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQ 109
             DDLK WD DF K+ Q TLF+L++AANYL+IK+LLDL CQTVADMIKGK+PEEIR TF+I+
Sbjct:    81 DDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140

Query:   110 NDF 112
             NDF
Sbjct:   141 NDF 143

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0007140 "male meiosis" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;TAS

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0005819 "spindle" evidence=IDA

GO:0009524 "phragmoplast" evidence=IDA

GO:0045910 "negative regulation of DNA recombination" evidence=IMP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0007067 "mitosis" evidence=RCA;TAS

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042752 "regulation of circadian rhythm" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2124281 SK11 "AT4G34210" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 74/115 (64%), Positives = 86/115 (74%)

Query:     1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHV--EAKT-TEDDLKNWDV 57
             AV ++SQTI HMVED C    IPL NV   IL  VIEY KKH   EA   +E+DL NWD 
Sbjct:    21 AVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKHHVDEANPISEEDLNNWDE 80

Query:    58 DFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
              F  L Q T+F+L++AANYL+IKSLLDL CQTVADMIKGK+PEEIR TF+I+NDF
Sbjct:    81 KFMDLEQSTIFELILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRSTFNIENDF 135

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2139504 SK12 "AT4G34470" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 73/115 (63%), Positives = 85/115 (73%)

Query:     1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKK-HV-EAKT-TEDDLKNWDV 57
             AV ++SQTI HMVED C    IPL NV   IL  VIEY KK HV EA   +E+DL  WD 
Sbjct:    21 AVAIQSQTIAHMVEDDCVADGIPLANVESKILVKVIEYCKKYHVDEANPISEEDLNKWDE 80

Query:    58 DFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
              F  L Q T+F+L++AANYL+IKSL DL CQTVADMIKGK+PEEIR TF+I+NDF
Sbjct:    81 KFMDLEQSTIFELILAANYLNIKSLFDLTCQTVADMIKGKTPEEIRSTFNIENDF 135

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2198621 SK4 "AT1G20140" [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 69/124 (55%), Positives = 89/124 (71%)

Query:     1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA------------KTT 48
             AV ++SQTIKHM+ED CAD+ IPL NV G IL+ VIEY KKHVEA               
Sbjct:    23 AVAVKSQTIKHMIEDDCADNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSAE 82

Query:    49 EDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHI 108
              D+LKNWD +F K+ Q TLFDL++AANYL+I  LLDL C+ VAD ++GK+PE++R  F+I
Sbjct:    83 NDELKNWDSEFVKVDQPTLFDLILAANYLNIGGLLDLTCKAVADQMRGKTPEQMRAHFNI 142

Query:   109 QNDF 112
             +ND+
Sbjct:   143 KNDY 146

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080532 SK13 "AT3G60010" [Arabidopsis thaliana (taxid:3702)]

 Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
 Identities = 70/118 (59%), Positives = 86/118 (72%)

Query:     1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHV--EAKTTE--DDLKNWD 56
             AV ++SQTI HM+ED C  + +P+ NV G ILS VIEY KKHV  ++ T E  D+LK WD
Sbjct:    20 AVAVQSQTIAHMIEDDCVANGVPIANVTGVILSKVIEYCKKHVVSDSPTEESKDELKKWD 79

Query:    57 VDFAK-LGQD-TLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
              +F K L Q  TLFD+++AANYL+IK LLDL CQTVADMI GK P+EIR    I+NDF
Sbjct:    80 AEFMKALEQSSTLFDVMLAANYLNIKDLLDLGCQTVADMITGKKPDEIRALLGIENDF 137

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2050281 SK3 "AT2G25700" [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 69/124 (55%), Positives = 88/124 (70%)

Query:     1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAK-----------TTE 49
             AV +ESQTIKHM+ED C D+ IPL NV G IL+ VIEY KKHVEA            +TE
Sbjct:    23 AVAVESQTIKHMIEDDCVDNGIPLPNVTGAILAKVIEYCKKHVEAAAEAGGDKDFYGSTE 82

Query:    50 D-DLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHI 108
             + +LK WD DF K+   TLFDLL AANYL+I  LLDL C+ VAD ++GK+P ++R+ F+I
Sbjct:    83 NHELKTWDNDFVKVDHPTLFDLLRAANYLNISGLLDLTCKAVADQMRGKTPAQMREHFNI 142

Query:   109 QNDF 112
             +ND+
Sbjct:   143 KNDY 146

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2080542 SK5 "AT3G60020" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 66/116 (56%), Positives = 85/116 (73%)

Query:     2 VMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAK 61
             V  +S  I HMVEDGCA  VIPL NV   IL +VI+Y +KHV++K  E+DLK WD DF K
Sbjct:    21 VARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVKSKE-EEDLKEWDADFMK 79

Query:    62 LGQDT-LFDLLMAANYLDIKSLLDLLCQTV-----ADMIKGKSPEEIRQTFHIQND 111
               + T LFD++MAANYL+I+SLLDL C+TV     AD++ GK+P+EIR  F+I+ND
Sbjct:    80 TIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIEND 135

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

TAIR|locus:2093094 SK10 "AT3G21860" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 64/111 (57%), Positives = 80/111 (72%)

Query:     5 ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKH-VEAKT--TEDDLKNWDVDFAK 61
             + QTI HM ED C D+ IPL  V G IL MVIEY  KH V+A    +++DLK WD +F +
Sbjct:    25 QCQTIAHMSEDDCTDNGIPLPEVTGKILEMVIEYCNKHHVDAANPCSDEDLKKWDKEFME 84

Query:    62 LGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
               Q T+FDL+MAANYL+IKSLLDL CQTVADMIK  + E  R+ F+I+ND+
Sbjct:    85 KYQSTIFDLIMAANYLNIKSLLDLACQTVADMIKDNTVEHTRKFFNIENDY 135

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

TAIR|locus:2056956 SK14 "AT2G03170" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 62/113 (54%), Positives = 82/113 (72%)

Query:     1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFA 60
             AV  + + ++HM+ED C  + +PL NV G ILS+V+EY KKHV  + + D+ K WD +F 
Sbjct:    21 AVARKLKIVEHMIEDDCVVTEVPLQNVTGKILSIVVEYCKKHVVDEES-DEFKTWDEEFM 79

Query:    61 K-LGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
             K   Q T+F LL+AANYL+IK LLDL  QTVAD IK K+PEEIR+ F+I+NDF
Sbjct:    80 KKFDQPTVFQLLLAANYLNIKGLLDLSAQTVADRIKDKTPEEIREIFNIENDF 132

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O49484	ASK11_ARATH	No assigned EC number	0.6412	1.0	0.8421	yes	no
Q557E4	SKP1B_DICDI	No assigned EC number	0.5307	0.9296	0.7345	yes	no
P52285	SKP1A_DICDI	No assigned EC number	0.5384	0.9296	0.7345	yes	no
O65674	ASK12_ARATH	No assigned EC number	0.6183	1.0	0.8421	yes	no
Q5BAX8	SKP1_EMENI	No assigned EC number	0.5116	0.8906	0.7080	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
pfam01466	78	pfam01466, Skp1, Skp1 family, dimerisation domain	1e-40
COG5201	158	COG5201, SKP1, SCF ubiquitin ligase, SKP1 componen	5e-33
smart00512	104	smart00512, Skp1, Found in Skp1 protein family	2e-26
pfam03931	61	pfam03931, Skp1_POZ, Skp1 family, tetramerisation	1e-11

>gnl|CDD|201810 pfam01466, Skp1, Skp1 family, dimerisation domain

 Score =  129 bits (327), Expect = 1e-40
 Identities = 55/77 (71%), Positives = 63/77 (81%)

Query: 52  LKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQND 111
           LK WD +F  + QDTLFDL++AANYL+IK LLDL CQ VADMIKGK+PEEIR+ F I+ND
Sbjct: 1   LKEWDAEFVDVDQDTLFDLILAANYLNIKGLLDLACQKVADMIKGKTPEEIREIFGIEND 60

Query: 112 FTPEEEEEIRTETPRAF 128
           FTPEEEEEIR E   AF
Sbjct: 61  FTPEEEEEIRKENEWAF 77

Length = 78

>gnl|CDD|227528 COG5201, SKP1, SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

 Score =  113 bits (283), Expect = 5e-33
 Identities = 58/128 (45%), Positives = 84/128 (65%), Gaps = 10/128 (7%)

Query: 6   SQTIKHMVEDGCADSV-IPLLNVRGTILSMVIEYLKKHVEAKTTEDD---------LKNW 55
           S  IK+M+ D  A +  IP  NVR ++L  V E+++ H  + + +++            W
Sbjct: 24  SILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFW 83

Query: 56  DVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPE 115
           D  F ++ Q+ L ++ +AANYL+IK LLDL C+ VA+MI+GKSPEEIR+TF+I+NDFTPE
Sbjct: 84  DRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPE 143

Query: 116 EEEEIRTE 123
           EE  IR E
Sbjct: 144 EERRIRKE 151

Length = 158

>gnl|CDD|214704 smart00512, Skp1, Found in Skp1 protein family

 Score = 94.7 bits (236), Expect = 2e-26
 Identities = 41/86 (47%), Positives = 55/86 (63%), Gaps = 7/86 (8%)

Query: 1   AVMLESQTIKHMVEDGCADSV----IPLLNVRGTILSMVIEYLKKHVE---AKTTEDDLK 53
            V  +S+TIK M+ED   D      IPL NV   ILS VIEY + HV+   +   +DD+ 
Sbjct: 19  EVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIP 78

Query: 54  NWDVDFAKLGQDTLFDLLMAANYLDI 79
            WD +F K+ Q+TLF+L++AANYLDI
Sbjct: 79  TWDAEFLKIDQETLFELILAANYLDI 104

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues. Length = 104

>gnl|CDD|217800 pfam03931, Skp1_POZ, Skp1 family, tetramerisation domain

 Score = 55.3 bits (134), Expect = 1e-11
 Identities = 21/44 (47%), Positives = 26/44 (59%)

Query: 1  AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVE 44
           V  +S+TIK M+ED   D  IPL NV   IL+ VIE+ K H  
Sbjct: 18 EVARQSKTIKAMIEDLGVDDPIPLPNVTSKILAKVIEWCKHHKV 61

Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
KOG1724	162	consensus SCF ubiquitin ligase, Skp1 component [Po	100.0
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	100.0
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	99.98
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	99.91
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	99.53
KOG3473	112	consensus RNA polymerase II transcription elongati	99.32
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.01
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	97.88
PHA03098	534	kelch-like protein; Provisional	97.86
PHA02713	557	hypothetical protein; Provisional	97.83
PHA02790	480	Kelch-like protein; Provisional	97.64
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.51
KOG4682	488	consensus Uncharacterized conserved protein, conta	94.48
KOG3433	203	consensus Protein involved in meiotic recombinatio	93.77
COG5124	209	Protein predicted to be involved in meiotic recomb	91.96
KOG2716	230	consensus Polymerase delta-interacting protein PDI	87.46
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	85.92
KOG4350	620	consensus Uncharacterized conserved protein, conta	85.22

>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7e-46  Score=266.57  Aligned_cols=128  Identities=56%  Similarity=0.850  Sum_probs=118.4

Q ss_pred             ChhhhhHHHHHHHhcCCC-CC--ceecCCCCHHHHHHHHHHHHhcccCCC---------CcccccchhhhhhccChHHHH
Q 040816            1 AVMLESQTIKHMVEDGCA-DS--VIPLLNVRGTILSMVIEYLKKHVEAKT---------TEDDLKNWDVDFAKLGQDTLF   68 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~-~~--~Ipl~~v~~~~L~~Vi~~c~~h~~~~~---------~~~~~~~wd~~Fl~~~~~~l~   68 (128)
                      ++|++|.+|++++.+.+. ..  +||||+|+|.+|++||+||+||+++++         ....++.||++|++++.+.||
T Consensus        22 ~~a~~s~~i~~~~~~~~~~~~~~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLf  101 (162)
T KOG1724|consen   22 EVARQSQTISAHMIEDGCADENDPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLF  101 (162)
T ss_pred             HHHHHhHHHHHHHHHcCCCccCCccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHH
Confidence            479999999999988763 34  899999999999999999999998742         233489999999999999999


Q ss_pred             HHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHhhhCCCCC
Q 040816           69 DLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF  128 (128)
Q Consensus        69 ~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~~i~~e~~W~f  128 (128)
                      +|+.|||||+|++|+++||+.||++++||||+|||+.|||++|+|+||+++++++|.|+|
T Consensus       102 dli~AAnyLdi~gLl~~~ck~va~mikgktpeEir~~f~I~~d~t~eE~~~~~~e~~~~~  161 (162)
T KOG1724|consen  102 DLILAANYLDIKGLLDLTCKTVANMIKGKTPEEIREIFNIENDETPEEEEAIRKENEWAF  161 (162)
T ss_pred             HHHHHhhhcccHHHHHHHHHHHHHHHccCCHHHHHHHcCCCCCCChhHHHHHhhcccccc
Confidence            999999999999999999999999999999999999999999999999999999999997

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.3e-44  Score=244.54  Aligned_cols=126  Identities=47%  Similarity=0.731  Sum_probs=117.6

Q ss_pred             hhhhhHHHHHHHhcCCC-CCceecCCCCHHHHHHHHHHHHhcccCCC---------CcccccchhhhhhccChHHHHHHH
Q 040816            2 VMLESQTIKHMVEDGCA-DSVIPLLNVRGTILSMVIEYLKKHVEAKT---------TEDDLKNWDVDFAKLGQDTLFDLL   71 (128)
Q Consensus         2 aa~~S~~i~~~l~~~~~-~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~---------~~~~~~~wd~~Fl~~~~~~l~~li   71 (128)
                      +|..|-+|++|+.+.++ +-|||+|+|+|.+|.+|++||+||+....         ...+.+.||+.|+.+|+++|++++
T Consensus        20 iAerSiLikN~l~d~~~~n~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~   99 (158)
T COG5201          20 IAERSILIKNMLCDSTACNYPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEIC   99 (158)
T ss_pred             HHHHHHHHHHHhccccccCCCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHH
Confidence            57889999999998875 78999999999999999999999998531         234577899999999999999999


Q ss_pred             HHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHhhhCCCC
Q 040816           72 MAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRA  127 (128)
Q Consensus        72 ~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~~i~~e~~W~  127 (128)
                      +|||||+|++|+++||+.||.+|+||||+|||++|||++||||||+++|++||.|+
T Consensus       100 laaNYL~ikpLLd~gCKivaemirgkSpeeir~tfni~ndfTpEEe~~irkEnEWa  155 (158)
T COG5201         100 LAANYLEIKPLLDLGCKIVAEMIRGKSPEEIRETFNIENDFTPEEERRIRKENEWA  155 (158)
T ss_pred             HhhccccchHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHHHHHhcccc
Confidence            99999999999999999999999999999999999999999999999999999997

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.98  E-value=1.2e-32  Score=176.90  Aligned_cols=77  Identities=66%  Similarity=1.050  Sum_probs=68.4

Q ss_pred             ccchhhhhhccChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHhhhCCCCC
Q 040816           52 LKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF  128 (128)
Q Consensus        52 ~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~~i~~e~~W~f  128 (128)
                      +++||++|++++.+.|++|+.||+||+|++|+++||++||++++|||++|||++|||++|+|+||+++++++|+|+|
T Consensus         1 l~~wD~~F~~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t~eee~~i~~e~~w~~   77 (78)
T PF01466_consen    1 LPEWDQEFLDVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLTPEEEEEIRKENEWAF   77 (78)
T ss_dssp             HHHHHHHHT-S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSSHHHHHHHHHHCCCTB
T ss_pred             CCHHHHHHHHcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHHHHHHHHcchhc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999997

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=99.91  E-value=1.3e-24  Score=146.06  Aligned_cols=79  Identities=52%  Similarity=0.817  Sum_probs=70.3

Q ss_pred             ChhhhhHHHHHHHhcCCCC----CceecCCCCHHHHHHHHHHHHhcccCCCCc---ccccchhhhhhccChHHHHHHHHH
Q 040816            1 AVMLESQTIKHMVEDGCAD----SVIPLLNVRGTILSMVIEYLKKHVEAKTTE---DDLKNWDVDFAKLGQDTLFDLLMA   73 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~~----~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~---~~~~~wd~~Fl~~~~~~l~~li~A   73 (128)
                      ++|++|++|++|+++.+..    .+||+|+|+|.+|++|++||+||+.++...   ..+++||.+|++++++.|++|+.|
T Consensus        19 ~~a~~S~~i~~~l~~~~~~~~~~~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~A   98 (104)
T smart00512       19 EVARQSKTIKAMIEDLGVDDENNNPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILA   98 (104)
T ss_pred             HHHHHHHHHHHHHHccCcccCCCCCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            4789999999999987632    489999999999999999999999886422   358999999999999999999999


Q ss_pred             hhhccH
Q 040816           74 ANYLDI   79 (128)
Q Consensus        74 A~~L~i   79 (128)
                      |+||+|
T Consensus        99 AnyL~I  104 (104)
T smart00512       99 ANYLDI  104 (104)
T ss_pred             HHhhCC
Confidence            999997

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=99.53  E-value=7.2e-15  Score=90.26  Aligned_cols=44  Identities=41%  Similarity=0.535  Sum_probs=38.6

Q ss_pred             ChhhhhHHHHHHHhcCCCCC-ceecCCCCHHHHHHHHHHHHhccc
Q 040816            1 AVMLESQTIKHMVEDGCADS-VIPLLNVRGTILSMVIEYLKKHVE   44 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~~~-~Ipl~~v~~~~L~~Vi~~c~~h~~   44 (128)
                      ++|++|++|++|+++.+... +||||+|+|++|++|++||+||++
T Consensus        18 ~~a~~S~~i~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~H~~   62 (62)
T PF03931_consen   18 EAAKQSKTIKNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEHHKN   62 (62)
T ss_dssp             HHHTTSHHHHHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccccccccCccCHHHHHHHHHHHHhcCC
Confidence            37999999999999987644 599999999999999999999974

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]

Probab=99.32  E-value=4.3e-12  Score=83.84  Aligned_cols=74  Identities=27%  Similarity=0.441  Sum_probs=64.1

Q ss_pred             ChhhhhHHHHHHHhcCC-----CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhh
Q 040816            1 AVMLESQTIKHMVEDGC-----ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAAN   75 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~-----~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~   75 (128)
                      ++|+.|+|||.|+++.+     ....+-+++++|.+|+||++|+.+...+......+++||     +.+++.++|+.|||
T Consensus        34 e~AmtSgTiraml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~-----IppemaleLL~aAn  108 (112)
T KOG3473|consen   34 EHAMTSGTIRAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFD-----IPPEMALELLMAAN  108 (112)
T ss_pred             hhhhhhhHHHHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCC-----CCHHHHHHHHHHhh
Confidence            47899999999999865     256799999999999999999999777654557889985     99999999999999


Q ss_pred             hccH
Q 040816           76 YLDI   79 (128)
Q Consensus        76 ~L~i   79 (128)
                      ||++
T Consensus       109 ~Lec  112 (112)
T KOG3473|consen  109 YLEC  112 (112)
T ss_pred             hhcC
Confidence            9974

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.01  E-value=2e-05  Score=48.96  Aligned_cols=69  Identities=25%  Similarity=0.268  Sum_probs=55.6

Q ss_pred             hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816            3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI   79 (128)
Q Consensus         3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i   79 (128)
                      +..|..++.|+....   ....|++++++..+++.+++|+....-                .++...+.+++.+|+++++
T Consensus        19 ~~~s~~f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~----------------~~~~~~~~~l~~~a~~~~~   82 (90)
T smart00225       19 AACSPYFKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKL----------------DLPEENVEELLELADYLQI   82 (90)
T ss_pred             hhcCHHHHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCcee----------------ecCHHHHHHHHHHHHHHCc
Confidence            345889999998754   356899999999999999999987322                1334478899999999999


Q ss_pred             HHHHHHHH
Q 040816           80 KSLLDLLC   87 (128)
Q Consensus        80 ~~L~~l~~   87 (128)
                      ++|.+.|+
T Consensus        83 ~~l~~~c~   90 (90)
T smart00225       83 PGLVELCE   90 (90)
T ss_pred             HHHHhhhC
Confidence            99998874

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=97.88  E-value=9.4e-05  Score=48.60  Aligned_cols=75  Identities=17%  Similarity=0.227  Sum_probs=60.1

Q ss_pred             hhhhHHHHHHHhcCC-C-C--CceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhcc
Q 040816            3 MLESQTIKHMVEDGC-A-D--SVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLD   78 (128)
Q Consensus         3 a~~S~~i~~~l~~~~-~-~--~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~   78 (128)
                      +..|..+++|+...+ . .  ..|++++++...+..+++||......      ++         +.+.+.+++..|++|+
T Consensus        31 ~~~S~~F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~------~~---------~~~~~~~ll~lA~~~~   95 (111)
T PF00651_consen   31 AARSPYFRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIE------IN---------SDENVEELLELADKLQ   95 (111)
T ss_dssp             HHHBHHHHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEE------EE----------TTTHHHHHHHHHHTT
T ss_pred             hccchhhhhcccccccccccccccccccccccccccccccccCCccc------CC---------HHHHHHHHHHHHHHhC
Confidence            567999999999983 2 2  35889999999999999999542221      11         3667999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 040816           79 IKSLLDLLCQTVAD   92 (128)
Q Consensus        79 i~~L~~l~~~~ia~   92 (128)
                      ++.|.+.|+..+..
T Consensus        96 ~~~L~~~~~~~l~~  109 (111)
T PF00651_consen   96 IPELKKACEKFLQE  109 (111)
T ss_dssp             BHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHh
Confidence            99999999998864

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA03098 kelch-like protein; Provisional

Probab=97.86  E-value=8.7e-05  Score=61.77  Aligned_cols=83  Identities=23%  Similarity=0.285  Sum_probs=66.4

Q ss_pred             hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816            3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL   82 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L   82 (128)
                      |..|...+.|+...-.+..|.|+. +..+|+.|++|+..-+-                .++.+.+.+|+.||++|+++.|
T Consensus        31 aa~S~yF~~mf~~~~~~~~i~l~~-~~~~~~~~l~y~Ytg~~----------------~i~~~~~~~ll~~A~~l~~~~l   93 (534)
T PHA03098         31 SSSSEYFKKMFKNNFKENEINLNI-DYDSFNEVIKYIYTGKI----------------NITSNNVKDILSIANYLIIDFL   93 (534)
T ss_pred             HhhhHHHHHHHhCCCCCceEEecC-CHHHHHHHHHHhcCCce----------------EEcHHHHHHHHHHHHHhCcHHH
Confidence            456899999998754467799988 99999999999876321                2556779999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHHHH
Q 040816           83 LDLLCQTVADMIKGKSPEEI  102 (128)
Q Consensus        83 ~~l~~~~ia~~i~gkt~eei  102 (128)
                      .+.|++++...+.-.+.-++
T Consensus        94 ~~~C~~~l~~~l~~~nc~~~  113 (534)
T PHA03098         94 INLCINYIIKIIDDNNCIDI  113 (534)
T ss_pred             HHHHHHHHHHhCCHhHHHHH
Confidence            99999999887765443333

>PHA02713 hypothetical protein; Provisional

Probab=97.83  E-value=0.00012  Score=61.98  Aligned_cols=84  Identities=14%  Similarity=0.172  Sum_probs=68.1

Q ss_pred             hhhhHHHHHHHhcCC----CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhcc
Q 040816            3 MLESQTIKHMVEDGC----ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLD   78 (128)
Q Consensus         3 a~~S~~i~~~l~~~~----~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~   78 (128)
                      |-.|...+.|+...-    ....|.|.+|+..+|+.|++|+....                  ++.+.+.+|+.||++|+
T Consensus        46 aa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~------------------i~~~nv~~ll~aA~~lq  107 (557)
T PHA02713         46 AAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH------------------ISSMNVIDVLKCADYLL  107 (557)
T ss_pred             hhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC------------------CCHHHHHHHHHHHHHHC
Confidence            446999999997642    14569999999999999999987621                  34567999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHh
Q 040816           79 IKSLLDLLCQTVADMIKGKSPEEIRQ  104 (128)
Q Consensus        79 i~~L~~l~~~~ia~~i~gkt~eeir~  104 (128)
                      |+.|.+.||.++...+.-.+-=+|..
T Consensus       108 i~~l~~~C~~~l~~~l~~~NCl~i~~  133 (557)
T PHA02713        108 IDDLVTDCESYIKDYTNHDTCIYMYH  133 (557)
T ss_pred             HHHHHHHHHHHHHhhCCccchHHHHH
Confidence            99999999999998877666555554

>PHA02790 Kelch-like protein; Provisional

Probab=97.64  E-value=0.00017  Score=59.77  Aligned_cols=79  Identities=9%  Similarity=0.087  Sum_probs=59.5

Q ss_pred             hhhhHHHHHHHhcCC--CCCceec--CCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhcc
Q 040816            3 MLESQTIKHMVEDGC--ADSVIPL--LNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLD   78 (128)
Q Consensus         3 a~~S~~i~~~l~~~~--~~~~Ipl--~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~   78 (128)
                      |..|...+.|+...-  ....|.+  .+|+..+|+.|++|+.--+                +.++.+.+.+|+.||++|+
T Consensus        41 Aa~S~YFraMF~~~~~Es~~~v~~~~~~v~~~~l~~lldy~YTg~----------------l~it~~nV~~ll~aA~~Lq  104 (480)
T PHA02790         41 KKLSPYFRTHLRQKYTKNKDPVTRVCLDLDIHSLTSIVIYSYTGK----------------VYIDSHNVVNLLRASILTS  104 (480)
T ss_pred             hhcCHHHHHHhcCCccccccceEEEecCcCHHHHHHHHHhheeee----------------EEEecccHHHHHHHHHHhC
Confidence            556899999997642  1233444  3899999999999984411                1255667999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 040816           79 IKSLLDLLCQTVADMIKGK   97 (128)
Q Consensus        79 i~~L~~l~~~~ia~~i~gk   97 (128)
                      |+.+.+.||+++...+.-.
T Consensus       105 i~~v~~~C~~fL~~~l~~~  123 (480)
T PHA02790        105 VEFIIYTCINFILRDFRKE  123 (480)
T ss_pred             hHHHHHHHHHHHHhhCCcc
Confidence            9999999999887765543

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.51  E-value=0.0004  Score=59.08  Aligned_cols=77  Identities=22%  Similarity=0.347  Sum_probs=64.8

Q ss_pred             hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816            3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI   79 (128)
Q Consensus         3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i   79 (128)
                      |-.|..++.|+...-   ....|.+.+|++.+|+.+++|+...+-                .++.+.+-+|+.||++|+|
T Consensus        56 Aa~S~YFraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i----------------~i~~~nVq~ll~aA~~lQi  119 (571)
T KOG4441|consen   56 AACSPYFRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKL----------------EISEDNVQELLEAASLLQI  119 (571)
T ss_pred             HhccHHHHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceE----------------EechHhHHHHHHHHHHhhh
Confidence            456899999998642   367899999999999999999877443                3678889999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 040816           80 KSLLDLLCQTVADMIK   95 (128)
Q Consensus        80 ~~L~~l~~~~ia~~i~   95 (128)
                      +.+.+.||.++...+-
T Consensus       120 ~~v~~~C~~fL~~~l~  135 (571)
T KOG4441|consen  120 PEVVDACCEFLESQLD  135 (571)
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999998876543

>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=94.48  E-value=0.15  Score=42.06  Aligned_cols=91  Identities=15%  Similarity=0.216  Sum_probs=69.3

Q ss_pred             hhhHHHHHHHhcCCC-------CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhh
Q 040816            4 LESQTIKHMVEDGCA-------DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANY   76 (128)
Q Consensus         4 ~~S~~i~~~l~~~~~-------~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~   76 (128)
                      .||+.+..|+.++-.       +-.||=|+|+...|..++.=+.+..                +.++.+.+..++.||.+
T Consensus        89 ~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dE----------------veI~l~dv~gvlAaA~~  152 (488)
T KOG4682|consen   89 FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDE----------------VEIKLSDVVGVLAAACL  152 (488)
T ss_pred             eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhh----------------eeccHHHHHHHHHHHHH
Confidence            589999999998642       2356778999999998887665511                24788999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCC
Q 040816           77 LDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFT  113 (128)
Q Consensus        77 L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t  113 (128)
                      |...+|++-|...+-..++-||   +.+++....-+.
T Consensus       153 lqldgl~qrC~evMie~lspkt---a~~yYea~ckYg  186 (488)
T KOG4682|consen  153 LQLDGLIQRCGEVMIETLSPKT---ACGYYEAACKYG  186 (488)
T ss_pred             HHHhhHHHHHHHHHHHhcChhh---hhHhhhhhhhhh
Confidence            9999999999998877765554   555665544443

>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.77  E-value=0.18  Score=37.23  Aligned_cols=31  Identities=39%  Similarity=0.697  Sum_probs=26.5

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCC
Q 040816           78 DIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFT  113 (128)
Q Consensus        78 ~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t  113 (128)
                      +|--|.+.||+..     |.-+++||+.||||.||.
T Consensus       170 nI~il~dy~~rkf-----~~e~nqi~~~fgIPed~d  200 (203)
T KOG3433|consen  170 NIFILIDYLYRKF-----GLEPNQIRKEFGIPEDFD  200 (203)
T ss_pred             hHHHHHHHHHHhc-----CCCHHHHhHhcCCCcccc
Confidence            7777888888764     789999999999999984

>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]

Probab=91.96  E-value=0.19  Score=36.99  Aligned_cols=31  Identities=39%  Similarity=0.722  Sum_probs=24.8

Q ss_pred             cHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCC
Q 040816           78 DIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFT  113 (128)
Q Consensus        78 ~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t  113 (128)
                      +|.-|.++.|+.+     +.-++|||+.||||.||.
T Consensus       174 nI~ilidy~c~kf-----~~~~~qir~~fgIPedld  204 (209)
T COG5124         174 NIEILIDYLCKKF-----FLKPEQIRKEFGIPEDLD  204 (209)
T ss_pred             hHHHHHHHHHHHc-----CCCHHHHHHhcCCCcchh
Confidence            5666777666654     678999999999999975

>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]

Probab=87.46  E-value=6.4  Score=30.09  Aligned_cols=79  Identities=19%  Similarity=0.302  Sum_probs=58.8

Q ss_pred             hhhHHHHHHHhcCCC-----CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhcc
Q 040816            4 LESQTIKHMVEDGCA-----DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLD   78 (128)
Q Consensus         4 ~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~   78 (128)
                      +..+.++.|++....     .+.|=+ +=+++=++.|+-||+---      ..++        -+..+|-+|+.-|.|..
T Consensus        25 k~dg~fk~m~e~~i~~~~d~s~~IFI-DRSpKHF~~ILNfmRdGd------v~LP--------e~~kel~El~~EA~fYl   89 (230)
T KOG2716|consen   25 KFDGFFKTMLETDIPVEKDESGCIFI-DRSPKHFDTILNFMRDGD------VDLP--------ESEKELKELLREAEFYL   89 (230)
T ss_pred             hhhhHHHHHhhcCCccccCCcCcEEe-cCChhHHHHHHHhhhccc------ccCc--------cchHHHHHHHHHHHHhh
Confidence            456677888887531     233433 567888999999987411      1233        24678999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCC
Q 040816           79 IKSLLDLLCQTVADMIKGK   97 (128)
Q Consensus        79 i~~L~~l~~~~ia~~i~gk   97 (128)
                      +.+|+++|...++..+++.
T Consensus        90 L~~Lv~~C~~~i~~~~~~~  108 (230)
T KOG2716|consen   90 LDGLVELCQSAIARLIRGY  108 (230)
T ss_pred             HHHHHHHHHHHhhhcccCc
Confidence            9999999999999998875

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=85.92  E-value=1.1  Score=32.97  Aligned_cols=42  Identities=36%  Similarity=0.375  Sum_probs=30.4

Q ss_pred             HHHHHHHhhhc--cHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCC
Q 040816           67 LFDLLMAANYL--DIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFT  113 (128)
Q Consensus        67 l~~li~AA~~L--~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t  113 (128)
                      +.....|||.-  ||..|...|++.     .|.+.+++++.||||+||.
T Consensus       144 ~~~~~~~anrwTDNI~~l~~~~~~k-----~~~~~~~i~k~f~Ip~d~d  187 (188)
T PF03962_consen  144 IKIAKEAANRWTDNIFSLKSYLKKK-----FGMDEEDIRKEFGIPEDFD  187 (188)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHh-----cCCCHHHHHHHcCCccccC
Confidence            34444466554  566666666664     4899999999999999984

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]

Probab=85.22  E-value=6.8  Score=32.84  Aligned_cols=89  Identities=15%  Similarity=0.209  Sum_probs=61.2

Q ss_pred             hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCC--------------cc---cccchhhhhhc-
Q 040816            3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTT--------------ED---DLKNWDVDFAK-   61 (128)
Q Consensus         3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~--------------~~---~~~~wd~~Fl~-   61 (128)
                      |-.|...|.|+-..-   .+..|||..-++..++.+++|+..-+-+-..              ..   ++..=-.+|+. 
T Consensus        64 AaRs~yFRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~  143 (620)
T KOG4350|consen   64 AARSSYFRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKE  143 (620)
T ss_pred             HHHHHHHHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            445888999988643   2678999888999999999998764443110              00   01111123332 


Q ss_pred             -cChHHHHHHHHHhhhccHHHHHHHHHHHHH
Q 040816           62 -LGQDTLFDLLMAANYLDIKSLLDLLCQTVA   91 (128)
Q Consensus        62 -~~~~~l~~li~AA~~L~i~~L~~l~~~~ia   91 (128)
                       +..+.++-++.||.+.+.+.|.++||.++-
T Consensus       144 iL~~~NvCmifdaA~ly~l~~Lt~~C~mfmD  174 (620)
T KOG4350|consen  144 ILKNENVCMIFDAAYLYQLTDLTDYCMMFMD  174 (620)
T ss_pred             HHcccceeeeeeHHHHhcchHHHHHHHHHHh
Confidence             455667778889999999999999998763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
2p1m_A	160	Tir1-ask1 Complex Structure Length = 160		1e-39
1fqv_B	149	Insights Into Scf Ubiquitin Ligases From The Struct		1e-26
3l2o_A	149	Structure-Based Mechanism Of Dimerization-Dependent		1e-26
1p22_B	145	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		1e-26
1fs1_B	141	Insights Into Scf Ubiquitin Ligases From The Struct		1e-25
2ast_A	159	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		9e-25
2e31_B	166	Structural Basis For Selection Of Glycosylated Subs		9e-25
1ldk_D	133	Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu		6e-23
3mks_A	169	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-22
1nex_A	169	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		3e-21

>pdb|2P1M|A Chain A, Tir1-ask1 Complex Structure Length = 160

Iteration: 1
 Score =  157 bits (398), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 78/123 (63%), Positives = 93/123 (75%), Gaps = 11/123 (8%)
Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAK-----------TTE 49
           AV LESQTI HMVED C D+ +PL NV   IL+ VIEY K+HVEA            T++
Sbjct: 21  AVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80
Query: 50  DDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQ 109
           DDLK WD DF K+ Q TLF+L++AANYL+IK+LLDL CQTVADMIKGK+PEEIR TF+I+
Sbjct: 81  DDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140
Query: 110 NDF 112
           NDF
Sbjct: 141 NDF 143

>pdb|1FQV|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 149

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 5   ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVE--AKTTEDDLKNWDVDFAKL 62
           +S TIK M+ED   D V PL NV   IL  VI++   H +    +  DD+  WD +F K+
Sbjct: 23  QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPGGSGTDDIPVWDQEFLKV 81
Query: 63  GQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
            Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+NDF
Sbjct: 82  DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 131

>pdb|3L2O|A Chain A, Structure-Based Mechanism Of Dimerization-Dependent Ubiquitination By The Scffbx4 Ubiquitin Ligase Length = 149

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/110 (54%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 5   ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVE--AKTTEDDLKNWDVDFAKL 62
           +S TIK M+ED   D V PL NV   IL  VI++   H +    +  DD+  WD +F K+
Sbjct: 23  QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPGGSGTDDIPVWDQEFLKV 81
Query: 63  GQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
            Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+NDF
Sbjct: 82  DQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 131

>pdb|1P22|B Chain B, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 145

Iteration: 1
 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 78/108 (72%), Gaps = 3/108 (2%)
Query: 5   ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQ 64
           +S TIK M+ED   D V PL NV   IL  VI++   H +     DD+  WD +F K+ Q
Sbjct: 23  QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKD--DPPDDIPVWDQEFLKVDQ 79
Query: 65  DTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
            TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+NDF
Sbjct: 80  GTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 127

>pdb|1FS1|B Chain B, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 141

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 11/118 (9%)
Query: 5   ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKH----------VEAKTTEDDLKN 54
           +S TIK M+ED   D V PL NV   IL  VI++   H             +   DD+  
Sbjct: 23  QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV 81
Query: 55  WDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
           WD +F K+ Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+NDF
Sbjct: 82  WDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDF 139

>pdb|2E31|B Chain B, Structural Basis For Selection Of Glycosylated Substrate By Scffbs1 Ubiquitin Ligase Length = 166

Iteration: 1
 Score =  108 bits (269), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/123 (47%), Positives = 78/123 (63%), Gaps = 15/123 (12%)
Query: 5   ESQTIKHMVED-----GCADSVIPLLNVRGTILSMVIEYLKKH----------VEAKTTE 49
           +S TIK M+ED        D  +PL NV   IL  VI++   H             +   
Sbjct: 26  QSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRT 85
Query: 50  DDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQ 109
           DD+  WD +F K+ Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+
Sbjct: 86  DDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIK 145
Query: 110 NDF 112
           NDF
Sbjct: 146 NDF 148

>pdb|1LDK|D Chain D, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 133

Iteration: 1
 Score =  102 bits (254), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 73/113 (64%), Gaps = 11/113 (9%)
Query: 5   ESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKH----------VEAKTTEDDLKN 54
           +S TIK M+ED   D V PL NV   IL  VI++   H             +   DD+  
Sbjct: 22  QSVTIKTMLEDLGMDPV-PLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPV 80
Query: 55  WDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFH 107
           WD +F K+ Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+
Sbjct: 81  WDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 133

>pdb|3MKS|A Chain A, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 169

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 72/101 (71%), Gaps = 9/101 (8%)
Query: 21  VIPLLNVRGTILSMVIEYLKKHVEAKTTEDD---------LKNWDVDFAKLGQDTLFDLL 71
           V+P+ NVR ++L  VIE+ + H ++   ++D         + +WD +F K+ Q+ L++++
Sbjct: 51  VMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEII 110
Query: 72  MAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
           +AANYL+IK LLD  C+ VA+MI+G+SPEEIR+TF+I NDF
Sbjct: 111 LAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDF 151

>pdb|1NEX|A Chain A, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 169

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 70/101 (69%), Gaps = 9/101 (8%)
Query: 21  VIPLLNVRGTILSMVIEYLKKHVEAKTTEDD---------LKNWDVDFAKLGQDTLFDLL 71
           V P+ NVR ++L  VIE+ + H ++   ++D         + +WD +F K+ Q+ L++++
Sbjct: 51  VXPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEXLYEII 110
Query: 72  MAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF 112
           +AANYL+IK LLD  C+ VA+ I+G+SPEEIR+TF+I NDF
Sbjct: 111 LAANYLNIKPLLDAGCKVVAEXIRGRSPEEIRRTFNIVNDF 151

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	3e-40
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	2e-37
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	1e-35
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	1e-35
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	1e-22
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	2e-19
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	8e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Length = 160

 Score =  130 bits (328), Expect = 3e-40
 Identities = 89/139 (64%), Positives = 105/139 (75%), Gaps = 11/139 (7%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA-----------KTTE 49
           AV LESQTI HMVED C D+ +PL NV   IL+ VIEY K+HVEA            T++
Sbjct: 21  AVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSD 80

Query: 50  DDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQ 109
           DDLK WD DF K+ Q TLF+L++AANYL+IK+LLDL CQTVADMIKGK+PEEIR TF+I+
Sbjct: 81  DDLKAWDADFMKIDQATLFELILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIK 140

Query: 110 NDFTPEEEEEIRTETPRAF 128
           NDFTPEEEEE+R E   AF
Sbjct: 141 NDFTPEEEEEVRRENQWAF 159

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Length = 169

 Score =  124 bits (311), Expect = 2e-37
 Identities = 58/144 (40%), Positives = 89/144 (61%), Gaps = 16/144 (11%)

Query: 1   AVMLESQTIKHMVEDGCADS-------VIPLLNVRGTILSMVIEYLKKHVEAKTTEDD-- 51
            +   S  +K+ + D   D        V+P+ NVR ++L  VIE+ + H ++   ++D  
Sbjct: 24  KIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDD 83

Query: 52  -------LKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQ 104
                  + +WD +F K+ Q+ L+++++AANYL+IK LLD  C+ VA+MI+G+SPEEIR+
Sbjct: 84  DSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRR 143

Query: 105 TFHIQNDFTPEEEEEIRTETPRAF 128
           TF+I NDFTPEEE  IR E   A 
Sbjct: 144 TFNIVNDFTPEEEAAIRRENEWAE 167

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Length = 141

 Score =  118 bits (296), Expect = 1e-35
 Identities = 60/123 (48%), Positives = 80/123 (65%), Gaps = 11/123 (8%)

Query: 1   AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHV----------EAKTTED 50
            +  +S TIK M+ED   D  +PL NV   IL  VI++   H             +   D
Sbjct: 19  EIAKQSVTIKTMLEDLGMD-PVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTD 77

Query: 51  DLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQN 110
           D+  WD +F K+ Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+I+N
Sbjct: 78  DIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKN 137

Query: 111 DFT 113
           DFT
Sbjct: 138 DFT 140

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Length = 99

 Score = 84.4 bits (209), Expect = 1e-22
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 1  AVMLESQTIKHMVEDGC--ADSVIPLLNVRGTILSMVIEYLKKHVEAK---TTEDDLKNW 55
          +  + S T+K M+E     +   I L      IL   +EYL  +++       +D++  +
Sbjct: 21 SAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80

Query: 56 DVDFAKLGQDTLFDLLMAANYLDI 79
          ++       +   +LL+AA+YL I
Sbjct: 81 EIP-----TEMSLELLLAADYLSI 99

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Length = 112

 Score = 76.3 bits (188), Expect = 2e-19
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 1   AVMLESQTIKHMVEDGCADS-----VIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNW 55
              L S TIK M+      +      +    +   +LS V  Y    V    +  ++  +
Sbjct: 34  EHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF 93

Query: 56  DVDFAKLGQDTLFDLLMAANYLD 78
            +       +   +LLMAAN+LD
Sbjct: 94  PIA-----PEIALELLMAANFLD 111

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Length = 96

 Score = 74.4 bits (183), Expect = 8e-19
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 1  AVMLESQTIKHMVEDGCADS-----VIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNW 55
             L S TIK M+      +      +    +   +LS V  Y    V    +  ++  +
Sbjct: 18 EHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF 77

Query: 56 DVDFAKLGQDTLFDLLMAANYLD 78
           +       +   +LLMAAN+LD
Sbjct: 78 PIA-----PEIALELLMAANFLD 95

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 2e-04
 Identities = 18/129 (13%), Positives = 33/129 (25%), Gaps = 35/129 (27%)

Query: 14  EDGCADSVI-PLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLM 72
                ++V+  L  +   I              K     ++             L  LL 
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-----------LRRLLK 239

Query: 73  AANY------LD-------IKSLLDLLCQT--------VADMIKGKSPEEIRQTFHIQND 111
           +  Y      L          +  +L C+         V D +   +   I    H    
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLD-HHSMT 297

Query: 112 FTPEEEEEI 120
            TP+E + +
Sbjct: 298 LTPDEVKSL 306

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	100.0
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	100.0
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	100.0
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	100.0
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	99.88
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	99.88
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	99.88
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.82
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	98.64
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	98.46
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	98.4
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	98.35
2vpk_A	116	Myoneurin; transcription regulation, transcription	98.35
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	98.32
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	98.32
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	98.27
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	98.27
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	98.19
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	98.17
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	98.14
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	98.12
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	98.09
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	97.92
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	97.88
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	97.84
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	97.74
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	97.7
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	97.64

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=100.00  E-value=2.1e-51  Score=297.05  Aligned_cols=128  Identities=45%  Similarity=0.750  Sum_probs=113.9

Q ss_pred             ChhhhhHHHHHHHhcCCC-----C--CceecCCCCHHHHHHHHHHHHhcccCCC---------CcccccchhhhhhccCh
Q 040816            1 AVMLESQTIKHMVEDGCA-----D--SVIPLLNVRGTILSMVIEYLKKHVEAKT---------TEDDLKNWDVDFAKLGQ   64 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~-----~--~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~---------~~~~~~~wd~~Fl~~~~   64 (128)
                      ++|++|+||++||++.+.     .  .+||||+|+|.+|++|++||+||+.+++         ....+++||++|+++++
T Consensus        24 ~vA~~S~tIk~ml~~~~~~~~~~~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~  103 (169)
T 3v7d_A           24 KIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQ  103 (169)
T ss_dssp             HHHTTSHHHHHHHHC-----------CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCH
T ss_pred             HHHHHhHHHHHHHHhcCcccccccCCCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCH
Confidence            379999999999998653     3  7899999999999999999999998752         24568999999999999


Q ss_pred             HHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHhhhCCCCC
Q 040816           65 DTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF  128 (128)
Q Consensus        65 ~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~~i~~e~~W~f  128 (128)
                      +.||+|+.|||||+|++|+++||++||++|+||||||||++|||++|||||||+++|+||+|+|
T Consensus       104 ~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ikgktpeeiR~~f~I~nd~t~eEe~~ir~en~W~~  167 (169)
T 3v7d_A          104 EMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAE  167 (169)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999998

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=100.00  E-value=4.1e-50  Score=287.85  Aligned_cols=128  Identities=70%  Similarity=1.071  Sum_probs=83.3

Q ss_pred             ChhhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCC-----------CCcccccchhhhhhccChHHHHH
Q 040816            1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAK-----------TTEDDLKNWDVDFAKLGQDTLFD   69 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~-----------~~~~~~~~wd~~Fl~~~~~~l~~   69 (128)
                      ++|++|++|++|+++.+...+||||+|+|.+|++|++||+||+.++           .....+++||++|++++.+.||+
T Consensus        21 ~vA~~S~~ik~ml~~~~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~e  100 (160)
T 2p1m_A           21 AVALESQTIAHMVEDDCVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFE  100 (160)
T ss_dssp             HHHHTCTTTC------------CCTTSCHHHHHHHHHC------------------------------------------
T ss_pred             HHHHHhHHHHHHHHccCCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHH
Confidence            3789999999999987777899999999999999999999999764           13456899999999999999999


Q ss_pred             HHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHhhhCCCCC
Q 040816           70 LLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIRTETPRAF  128 (128)
Q Consensus        70 li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~~i~~e~~W~f  128 (128)
                      |+.|||||+|++|+++||++||++|+||||+|||++|||++||||||++++|+||+|+|
T Consensus       101 Li~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~  159 (160)
T 2p1m_A          101 LILAANYLNIKNLLDLTCQTVADMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAF  159 (160)
T ss_dssp             CHHHHHHTTCHHHHHHHHHHHHHTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCcccc
Confidence            99999999999999999999999999999999999999999999999999999999986

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=100.00  E-value=1.9e-43  Score=248.53  Aligned_cols=113  Identities=52%  Similarity=0.831  Sum_probs=95.3

Q ss_pred             ChhhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCC----------CcccccchhhhhhccChHHHHHH
Q 040816            1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKT----------TEDDLKNWDVDFAKLGQDTLFDL   70 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~----------~~~~~~~wd~~Fl~~~~~~l~~l   70 (128)
                      ++|++|++|++|+++.+ ..+||||+|+|.+|++|++||+||+.+++          ....+++||++|++++.+.||+|
T Consensus        19 ~vA~~S~~ik~ml~~~~-~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eL   97 (141)
T 1fs1_B           19 EIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFEL   97 (141)
T ss_dssp             GGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhcC-CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHH
Confidence            47899999999999876 77999999999999999999999997752          24568999999999999999999


Q ss_pred             HHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCH
Q 040816           71 LMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTP  114 (128)
Q Consensus        71 i~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~  114 (128)
                      +.|||||+|++|+++||++||++|+||||||||++|||++||||
T Consensus        98 i~AAnyL~I~~Lldl~c~~vA~~ikgkt~eeiR~~f~I~~d~tp  141 (141)
T 1fs1_B           98 ILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTE  141 (141)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC-------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHHcCCCCCCCC
Confidence            99999999999999999999999999999999999999999997

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=99.88  E-value=1.2e-23  Score=138.82  Aligned_cols=74  Identities=26%  Similarity=0.405  Sum_probs=64.3

Q ss_pred             ChhhhhHHHHHHHhcCCC-----CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhh
Q 040816            1 AVMLESQTIKHMVEDGCA-----DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAAN   75 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~   75 (128)
                      ++|++|+||++|+++.+.     ..+||||+|+|.+|+||++||+||+.++.....+++|     +++++.||+|+.|||
T Consensus        18 ~~A~~S~~ik~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w-----~vd~~~l~eLi~AAn   92 (96)
T 2fnj_C           18 EHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-----PIAPEIALELLMAAN   92 (96)
T ss_dssp             HHHTTSHHHHHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCC-----CCCTTTHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCc-----ccCHHHHHHHHHHHH
Confidence            379999999999998543     3589999999999999999999999875456678888     699999999999999


Q ss_pred             hccH
Q 040816           76 YLDI   79 (128)
Q Consensus        76 ~L~i   79 (128)
                      ||+|
T Consensus        93 yLdI   96 (96)
T 2fnj_C           93 FLDC   96 (96)
T ss_dssp             HHTC
T ss_pred             HhCc
Confidence            9996

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=99.88  E-value=3.1e-23  Score=140.50  Aligned_cols=74  Identities=26%  Similarity=0.405  Sum_probs=64.7

Q ss_pred             ChhhhhHHHHHHHhcCCC-----CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhh
Q 040816            1 AVMLESQTIKHMVEDGCA-----DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAAN   75 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~   75 (128)
                      ++|++|+||++||++.+.     ..+||||+|+|.+|+||++||+||+.++.....+++|     +++++.||+|+.|||
T Consensus        34 ~~A~~S~tIk~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w-----~vd~~~lfeLi~AAn  108 (112)
T 1vcb_B           34 EHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-----PIAPEIALELLMAAN  108 (112)
T ss_dssp             HHHHTSHHHHHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCC-----CCCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCc-----ccCHHHHHHHHHHHH
Confidence            379999999999998643     2589999999999999999999999876556678888     699999999999999


Q ss_pred             hccH
Q 040816           76 YLDI   79 (128)
Q Consensus        76 ~L~i   79 (128)
                      ||+|
T Consensus       109 yLdI  112 (112)
T 1vcb_B          109 FLDC  112 (112)
T ss_dssp             HHTC
T ss_pred             HhCc
Confidence            9997

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=99.88  E-value=1.8e-23  Score=138.81  Aligned_cols=74  Identities=27%  Similarity=0.488  Sum_probs=63.9

Q ss_pred             ChhhhhHHHHHHHhcCC--CCCceecCCCCHHHHHHHHHHHHhcccCCC---CcccccchhhhhhccChHHHHHHHHHhh
Q 040816            1 AVMLESQTIKHMVEDGC--ADSVIPLLNVRGTILSMVIEYLKKHVEAKT---TEDDLKNWDVDFAKLGQDTLFDLLMAAN   75 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~--~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~---~~~~~~~wd~~Fl~~~~~~l~~li~AA~   75 (128)
                      ++|++|+||++|+++..  ...+||||+|+|.+|+||++||+||+++++   ....+++|     +++++.||+|+.|||
T Consensus        21 ~vA~~S~~ik~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w-----~vd~~~lfeLi~AAn   95 (99)
T 1hv2_A           21 SAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-----EIPTEMSLELLLAAD   95 (99)
T ss_dssp             HHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-----CCCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCc-----cCCHHHHHHHHHHHH
Confidence            37999999999999843  237899999999999999999999997642   34567888     699999999999999


Q ss_pred             hccH
Q 040816           76 YLDI   79 (128)
Q Consensus        76 ~L~i   79 (128)
                      ||+|
T Consensus        96 yLdI   99 (99)
T 1hv2_A           96 YLSI   99 (99)
T ss_dssp             HHCC
T ss_pred             HhCc
Confidence            9997

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.82  E-value=5.8e-21  Score=125.90  Aligned_cols=73  Identities=26%  Similarity=0.411  Sum_probs=63.7

Q ss_pred             hhhhhHHHHHHHhcCCC-----CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhh
Q 040816            2 VMLESQTIKHMVEDGCA-----DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANY   76 (128)
Q Consensus         2 aa~~S~~i~~~l~~~~~-----~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~   76 (128)
                      ||++|++|++|+++.+.     ..+||||+|++.+|++|++||+||+.+++....+++|     +++++.+++|+.||||
T Consensus        20 vA~~S~~ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~-----~i~~~~l~eLl~AAny   94 (97)
T 4ajy_C           20 HALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF-----PIAPEIALELLMAANF   94 (97)
T ss_dssp             HHTTSHHHHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCC-----CCCGGGHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcC-----cCCHHHHHHHHHHHhh
Confidence            68999999999998542     6789999999999999999999999886555678999     4899999999999999


Q ss_pred             ccH
Q 040816           77 LDI   79 (128)
Q Consensus        77 L~i   79 (128)
                      |+.
T Consensus        95 L~~   97 (97)
T 4ajy_C           95 LDC   97 (97)
T ss_dssp             HTC
T ss_pred             hCC
Confidence            983

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=98.64  E-value=1.6e-08  Score=69.11  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=58.9

Q ss_pred             hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816            3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL   82 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L   82 (128)
                      |..|..++.|+.... ...|.|++++..+++.+++|+....-                .++.+.+.+|+.||++|+|+.|
T Consensus        45 aa~S~yF~~mf~~~~-~~~i~l~~~~~~~f~~lL~fiYtg~~----------------~i~~~~v~~ll~~A~~l~i~~L  107 (135)
T 2yy9_A           45 ACCSHFFQRIYGDGT-GGSVVLPAGFAEIFGLLLDFFYTGHL----------------ALTSGNRDQVLLAAKELRVPEA  107 (135)
T ss_dssp             HHHCHHHHHTCC-----CCEEECGGGHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHHHHTTCHHH
T ss_pred             HHhCHHHHHHHcCCC-CCeEEeCCCCHHHHHHHHHHHhCCCC----------------CCCHHHHHHHHHHHHHhCcHHH
Confidence            456899999998654 56799999999999999999987332                1344668999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCHH
Q 040816           83 LDLLCQTVADMIKGKSPE  100 (128)
Q Consensus        83 ~~l~~~~ia~~i~gkt~e  100 (128)
                      .+.|++++...+.|+++.
T Consensus       108 ~~~C~~~l~~~l~~~~~~  125 (135)
T 2yy9_A          108 VELCQSFQPQTSVGQAQS  125 (135)
T ss_dssp             HHHHHHCCC---------
T ss_pred             HHHHHHHHHHhccCCCCC
Confidence            999999999998888764

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=98.46  E-value=8.5e-07  Score=59.15  Aligned_cols=74  Identities=18%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816            3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL   82 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L   82 (128)
                      |..|...+.|+...  ...|.+++++..+++.+++|+..-.-.                ++.+.+.+|+.||++|+++.|
T Consensus        48 aa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~~----------------~~~~~~~~ll~~A~~~~i~~L  109 (121)
T 1buo_A           48 ACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTATLQ----------------AKAEDLDDLLYAAEILEIEYL  109 (121)
T ss_dssp             HHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSCCC----------------CCGGGHHHHHHHHHHHTCHHH
T ss_pred             hhcCHHHHHHHcCC--CcEEEeCCCCHHHHHHHHHhhcCCCcC----------------CCHHHHHHHHHHHHHHCCHHH
Confidence            45799999999864  567999999999999999999863221                334568999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 040816           83 LDLLCQTVADMI   94 (128)
Q Consensus        83 ~~l~~~~ia~~i   94 (128)
                      .+.|++++...|
T Consensus       110 ~~~c~~~l~~~I  121 (121)
T 1buo_A          110 EEQCLKMLETIQ  121 (121)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999997754

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=98.40  E-value=1.3e-06  Score=56.80  Aligned_cols=75  Identities=19%  Similarity=0.198  Sum_probs=60.2

Q ss_pred             hhhhHHHHHHHhcCCC--CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816            3 MLESQTIKHMVEDGCA--DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK   80 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~--~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~   80 (128)
                      +..|...+.|+.....  ...|.+|+++..+++.+++|+..-.-                .++.+.+.+|+.||++++++
T Consensus        32 a~~S~~F~~~f~~~~~e~~~~i~l~~~~~~~f~~~l~~iYt~~~----------------~~~~~~~~~ll~~A~~~~~~   95 (109)
T 2vkp_A           32 AVGSSVFYAMFYGDLAEVKSEIHIPDVEPAAFLILLKYMYSDEI----------------DLEADTVLATLYAAKKYIVP   95 (109)
T ss_dssp             HHHCHHHHHHHC------CCEEEETTSCHHHHHHHHHHHHHCCC----------------CCCTTTHHHHHHHHHHTTCH
T ss_pred             HHcCHHHHHHhcCCcccCCCeEEeCCCCHHHHHHHHHHHcCCCc----------------cCCHHHHHHHHHHHHHhCcH
Confidence            4579999999986431  27899999999999999999987322                13446788999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 040816           81 SLLDLLCQTVADM   93 (128)
Q Consensus        81 ~L~~l~~~~ia~~   93 (128)
                      .|.+.|.+++...
T Consensus        96 ~L~~~c~~~l~~~  108 (109)
T 2vkp_A           96 ALAKACVNFLETS  108 (109)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=98.35  E-value=3.3e-06  Score=58.88  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=68.4

Q ss_pred             hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816            3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI   79 (128)
Q Consensus         3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i   79 (128)
                      +..|...+.|+....   ....|.+|+++..+++.+++|+....-.                ++.+.+.+|+.+|+++++
T Consensus        54 ~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~----------------~~~~~~~~ll~~A~~~~~  117 (172)
T 3htm_A           54 AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP----------------NLDKMADDLLAAADKYAL  117 (172)
T ss_dssp             HHHCHHHHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCT----------------TGGGTHHHHHHHHHHTTC
T ss_pred             HHcCHHHHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCC----------------CcHHHHHHHHHHHHHhCc
Confidence            467999999999753   2578999999999999999999863321                334567899999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHH
Q 040816           80 KSLLDLLCQTVADMIKGKSPEEI  102 (128)
Q Consensus        80 ~~L~~l~~~~ia~~i~gkt~eei  102 (128)
                      +.|.+.|.+++...+...+.-++
T Consensus       118 ~~l~~~c~~~l~~~l~~~n~~~~  140 (172)
T 3htm_A          118 ERLKVMCEDALCSNLSVENAAEI  140 (172)
T ss_dssp             HHHHHHHHHHHHHTCCTTTHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999987777666554

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=98.35  E-value=2.6e-06  Score=56.18  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             hhhhHHHHHHHhcCCCCCceecC--CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816            3 MLESQTIKHMVEDGCADSVIPLL--NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK   80 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~~~~Ipl~--~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~   80 (128)
                      |..|...+.|+... ....|.|+  +++..+++.+++|+..-.-.                ++.+.+.+|+.||++|+++
T Consensus        42 aa~S~yF~~~f~~~-~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~----------------~~~~~v~~ll~~A~~~~i~  104 (116)
T 2vpk_A           42 ASFSEYFGAIYRST-SENNVFLDQSQVKADGFQKLLEFIYTGTLN----------------LDSWNVKEIHQAADYLKVE  104 (116)
T ss_dssp             HHHCHHHHHHHTTC-CCSCEECCTTTCCHHHHHHHHHHHHHSCCC----------------CCTTTHHHHHHHHHHTTCH
T ss_pred             hhcCHHHHHHHcCC-CCCeEEeecCCCCHHHHHHHHHHHcCCCcc----------------cCHHHHHHHHHHHHHhCCH
Confidence            45799999999876 35556666  99999999999999863211                3345789999999999999


Q ss_pred             HHHHHHHHHHH
Q 040816           81 SLLDLLCQTVA   91 (128)
Q Consensus        81 ~L~~l~~~~ia   91 (128)
                      .|.+.|++++.
T Consensus       105 ~L~~~C~~~l~  115 (116)
T 2vpk_A          105 EVVTKCKIKME  115 (116)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999998873

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=98.32  E-value=3.3e-06  Score=55.91  Aligned_cols=72  Identities=18%  Similarity=0.252  Sum_probs=58.5

Q ss_pred             hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816            3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI   79 (128)
Q Consensus         3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i   79 (128)
                      +..|...+.|+....   ....|.+++++..+++.+++|+..-.-.                ++.+.+.+|+.||+++++
T Consensus        45 aa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~----------------~~~~~~~~ll~~A~~~~i  108 (120)
T 2if5_A           45 AACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLT----------------VSTANVGDILSAARLLEI  108 (120)
T ss_dssp             HHHCHHHHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCC----------------CCGGGHHHHHHHHHHTTC
T ss_pred             HHhCHHHHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCc----------------cCHHHHHHHHHHHHHhCC
Confidence            456999999998752   3568999999999999999999863221                345678999999999999


Q ss_pred             HHHHHHHHHHH
Q 040816           80 KSLLDLLCQTV   90 (128)
Q Consensus        80 ~~L~~l~~~~i   90 (128)
                      ++|.+.|.+++
T Consensus       109 ~~L~~~C~~~L  119 (120)
T 2if5_A          109 PAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=98.32  E-value=9.2e-07  Score=58.88  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=59.1

Q ss_pred             hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816            3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL   82 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L   82 (128)
                      |..|...+.|+.... ...|.+|+++..+++.+++|+..-.-.                ++.+.+.+|+.||++|+++.|
T Consensus        44 aa~S~yF~~~f~~~~-~~~i~l~~~~~~~f~~ll~~iYtg~~~----------------~~~~~v~~ll~~A~~~~i~~L  106 (119)
T 3b84_A           44 ACCSHFFQSLYGDGS-GGSVVLPAGFAEIFGLLLDFFYTGHLA----------------LTSGNRDQVLLAARELRVPEA  106 (119)
T ss_dssp             HHHCHHHHHHHTTTT-CCCEEECGGGHHHHHHHHHHHHHSCCC----------------CCTTTHHHHHHHHHHTTCHHH
T ss_pred             hhcCHHHHHHHCCCC-CCeEEeCCCCHHHHHHHHHHHcCCCCc----------------cCHHHHHHHHHHHHHhCcHHH
Confidence            456999999998754 678999999999999999999863221                334558899999999999999


Q ss_pred             HHHHHHHHHH
Q 040816           83 LDLLCQTVAD   92 (128)
Q Consensus        83 ~~l~~~~ia~   92 (128)
                      .+.|++++..
T Consensus       107 ~~~C~~~l~~  116 (119)
T 3b84_A          107 VELCQSFKPK  116 (119)
T ss_dssp             HHHHHHCC--
T ss_pred             HHHHHHHHHH
Confidence            9999987743

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=98.27  E-value=2.1e-06  Score=57.07  Aligned_cols=71  Identities=18%  Similarity=0.235  Sum_probs=58.7

Q ss_pred             hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816            3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL   82 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L   82 (128)
                      |..|...++|+...  ...|.+++++..+++.+++|+..-.-                .++.+.+.+|+.||++|+++.|
T Consensus        47 aa~S~yF~~~f~~~--~~~i~l~~~~~~~f~~ll~~~Ytg~~----------------~i~~~~~~~ll~~A~~l~i~~L  108 (119)
T 2q81_A           47 AACSEYFKMLFVDQ--KDVVHLDISNAAGLGQVLEFMYTAKL----------------SLSPENVDDVLAVATFLQMQDI  108 (119)
T ss_dssp             HHHCHHHHHHHHHC--CSGGGGGGCCHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHHHHTTCHHH
T ss_pred             HHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHHHcCCCC----------------ccCHHHHHHHHHHHHHhCCHHH
Confidence            45699999999873  56788999999999999999986322                1344568999999999999999


Q ss_pred             HHHHHHHHH
Q 040816           83 LDLLCQTVA   91 (128)
Q Consensus        83 ~~l~~~~ia   91 (128)
                      .+.|+++++
T Consensus       109 ~~~C~~~l~  117 (119)
T 2q81_A          109 ITACHALKS  117 (119)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999999874

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=98.27  E-value=4e-06  Score=56.13  Aligned_cols=74  Identities=16%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             hhhhHHHHHHHhcCCC--CCceec-CCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816            3 MLESQTIKHMVEDGCA--DSVIPL-LNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI   79 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~--~~~Ipl-~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i   79 (128)
                      |..|..+++|+.....  ...|.| ++++..+++.+++|+..-.-                .++.+.+.+|+.||++|++
T Consensus        49 aa~S~~F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~----------------~~~~~~~~~ll~~A~~~~i  112 (127)
T 1r29_A           49 MACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL----------------NLREGNIMAVMATAMYLQM  112 (127)
T ss_dssp             HHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHHHHTTC
T ss_pred             HHhCHHHHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCc----------------CcCHHHHHHHHHHHHHhCC
Confidence            4579999999987542  567999 89999999999999976321                1345678999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 040816           80 KSLLDLLCQTVAD   92 (128)
Q Consensus        80 ~~L~~l~~~~ia~   92 (128)
                      +.|.+.|.+++..
T Consensus       113 ~~L~~~c~~~l~~  125 (127)
T 1r29_A          113 EHVVDTCRKFIKA  125 (127)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998853

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=98.19  E-value=1.8e-06  Score=58.62  Aligned_cols=91  Identities=11%  Similarity=0.112  Sum_probs=58.7

Q ss_pred             hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816            3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI   79 (128)
Q Consensus         3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i   79 (128)
                      +..|..++.|+....   ....|.+|+++..+++.+++|+....-.                ++.+.+.+|+.+|+++++
T Consensus        45 ~~~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~----------------~~~~~~~~ll~~A~~~~~  108 (145)
T 4eoz_A           45 AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP----------------NLDKMADDLLAAADKYAL  108 (145)
T ss_dssp             HHHCHHHHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCT----------------TGGGTHHHHHHHHHHTTC
T ss_pred             HHcCHHHHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccC----------------CcHHHHHHHHHHHHHhCH
Confidence            457999999998753   2468999999999999999999863321                234567899999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCC
Q 040816           80 KSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDF  112 (128)
Q Consensus        80 ~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~  112 (128)
                      +.|.+.|++++...+...+   .-.++.+..-+
T Consensus       109 ~~l~~~c~~~l~~~l~~~n---~~~~l~~A~~~  138 (145)
T 4eoz_A          109 ERLKVMCEDALCSNLSVEN---AAEILILADLH  138 (145)
T ss_dssp             HHHHHHHHCC-----------------------
T ss_pred             HHHHHHHHHHHHHhCCHHH---HHHHHHHHHHh
Confidence            9999999999987665443   34444444443

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=98.17  E-value=1e-06  Score=59.38  Aligned_cols=73  Identities=11%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             hhhhHHHHHHHhcCCCCCceecC-CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHH
Q 040816            3 MLESQTIKHMVEDGCADSVIPLL-NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKS   81 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~~~~Ipl~-~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~   81 (128)
                      +..|...+.|+... ....|.+| +++..+++.+++|+..-.-                .++.+.+.+|+.||++|+|+.
T Consensus        53 aa~S~~F~~~f~~~-~~~~i~l~~~~~~~~f~~ll~~iYtg~~----------------~i~~~~~~~ll~~A~~~~i~~  115 (129)
T 3ga1_A           53 AASSSYFRDLFNNS-RSAVVELPAAVQPQSFQQILSFCYTGRL----------------SMNVGDQDLLMYTAGFLQIQE  115 (129)
T ss_dssp             HHHBHHHHHHHHHC-CCSEEECCTTCCHHHHHHHHHHHHHSEE----------------ECCTTTHHHHHHHHHHTTBTT
T ss_pred             HHcCHHHHHHHcCC-CCCEEEECCCCCHHHHHHHHHHHhCCcc----------------ccCHHHHHHHHHHHHHhCCHH
Confidence            45799999999987 56789998 8999999999999976322                234456899999999999999


Q ss_pred             HHHHHHHHHHH
Q 040816           82 LLDLLCQTVAD   92 (128)
Q Consensus        82 L~~l~~~~ia~   92 (128)
                      |.+.|++++..
T Consensus       116 l~~~C~~~L~~  126 (129)
T 3ga1_A          116 IMEKGTEFFLK  126 (129)
T ss_dssp             SSCC-------
T ss_pred             HHHHHHHHHHH
Confidence            99999998854

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=98.14  E-value=3.9e-06  Score=57.79  Aligned_cols=72  Identities=21%  Similarity=0.313  Sum_probs=58.5

Q ss_pred             hhhhHHHHHHHhcCC-----CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhc
Q 040816            3 MLESQTIKHMVEDGC-----ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYL   77 (128)
Q Consensus         3 a~~S~~i~~~l~~~~-----~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L   77 (128)
                      |..|..++.|+....     ....|.|++++..+++.+++|+..-.-                .++.+.+.+|+.||++|
T Consensus        67 aa~S~yF~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~----------------~i~~~~v~~ll~~A~~l  130 (144)
T 2ppi_A           67 AAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQI----------------RLNEDTIQDVVQAADLL  130 (144)
T ss_dssp             HHHCHHHHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCC----------------CCCTTTHHHHHHHHHHT
T ss_pred             HHcCHHHHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCC----------------CCCHHHHHHHHHHHHHh
Confidence            456999999998742     356899999999999999999975211                13456789999999999


Q ss_pred             cHHHHHHHHHHHH
Q 040816           78 DIKSLLDLLCQTV   90 (128)
Q Consensus        78 ~i~~L~~l~~~~i   90 (128)
                      +++.|.+.|++++
T Consensus       131 ~i~~L~~~C~~~L  143 (144)
T 2ppi_A          131 LLTDLKTLCCEFL  143 (144)
T ss_dssp             TCHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHHh
Confidence            9999999998764

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=98.12  E-value=3.8e-06  Score=57.23  Aligned_cols=78  Identities=10%  Similarity=0.076  Sum_probs=62.9

Q ss_pred             hhhhHHHHHHHhcCCC-CCceecC-CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816            3 MLESQTIKHMVEDGCA-DSVIPLL-NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK   80 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~-~~~Ipl~-~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~   80 (128)
                      |..|...+.|+..... ...|.+| +|+...++.+++|+..-.-                .++.+.+.+|+.||++|+++
T Consensus        56 aa~S~yF~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~----------------~i~~~~v~~ll~~A~~~~i~  119 (138)
T 2z8h_A           56 AACSSYFHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKL----------------ILSKDNVDEVCRCVEFLSVH  119 (138)
T ss_dssp             HHHCHHHHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHHHHHTCG
T ss_pred             HHcCHHHHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCc----------------ccCHHHHHHHHHHHHHhCCH
Confidence            4579999999987543 3578896 8999999999999987322                13456689999999999999


Q ss_pred             HHHHHHHHHHHHHhcC
Q 040816           81 SLLDLLCQTVADMIKG   96 (128)
Q Consensus        81 ~L~~l~~~~ia~~i~g   96 (128)
                      .|.+.|++++...+..
T Consensus       120 ~L~~~C~~~l~~~l~~  135 (138)
T 2z8h_A          120 NIEESCFQFLKFKFLD  135 (138)
T ss_dssp             GGHHHHHHHTTCCCSC
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999998765543

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=98.09  E-value=6.6e-06  Score=61.20  Aligned_cols=83  Identities=19%  Similarity=0.253  Sum_probs=61.3

Q ss_pred             hhhhHHHHHHHhcCC-----CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhc
Q 040816            3 MLESQTIKHMVEDGC-----ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYL   77 (128)
Q Consensus         3 a~~S~~i~~~l~~~~-----~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L   77 (128)
                      |..|...+.|+....     ....|++++++..+++.+++|+..-.-.                ++.+.+.+|+.||++|
T Consensus        51 aa~S~yF~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~----------------i~~~~v~~ll~~A~~l  114 (256)
T 3hve_A           51 AAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIR----------------LNEDTIQDVVQAADLL  114 (256)
T ss_dssp             HTTCHHHHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCC----------------CC-CCHHHHHHHHHHH
T ss_pred             HHcCHHHHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCc----------------ccHhHHHHHHHHHHHH
Confidence            446899999997642     2568999999999999999999863221                3445688999999999


Q ss_pred             cHHHHHHHHHHHHHHHhcCCCHHH
Q 040816           78 DIKSLLDLLCQTVADMIKGKSPEE  101 (128)
Q Consensus        78 ~i~~L~~l~~~~ia~~i~gkt~ee  101 (128)
                      +++.|.+.|+.++...+.-.+.-+
T Consensus       115 ~i~~l~~~c~~~L~~~l~~~n~~~  138 (256)
T 3hve_A          115 LLTDLKTLCCEFLEGCIAAENCIG  138 (256)
T ss_dssp             TCHHHHHHHHHHHHHTCCSSTTHH
T ss_pred             ChHHHHHHHHHHHHhhCCHhhHHH
Confidence            999999999999887766554333

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=97.92  E-value=4.5e-05  Score=58.11  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=67.0

Q ss_pred             hhhhHHHHHHHhcCC---CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816            3 MLESQTIKHMVEDGC---ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI   79 (128)
Q Consensus         3 a~~S~~i~~~l~~~~---~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i   79 (128)
                      |..|...+.|+...-   ....|.|++++..+++.+++|+....-.                ++...+.+|+.||+++++
T Consensus       194 aa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~----------------~~~~~~~~ll~~A~~~~~  257 (312)
T 3hqi_A          194 AARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAP----------------NLDKMADDLLAAADKYAL  257 (312)
T ss_dssp             HHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCT----------------THHHHHHHHHHHHHHTTC
T ss_pred             HHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCC----------------ChHHHHHHHHHHHHHhCH
Confidence            567999999998642   3578999999999999999999763221                123788999999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCHHHH
Q 040816           80 KSLLDLLCQTVADMIKGKSPEEI  102 (128)
Q Consensus        80 ~~L~~l~~~~ia~~i~gkt~eei  102 (128)
                      +.|...|...+...+...+.-++
T Consensus       258 ~~l~~~c~~~l~~~~~~~n~~~~  280 (312)
T 3hqi_A          258 ERLKVMCEDALCSNLSVENAAEI  280 (312)
T ss_dssp             HHHHHHHHHHHHTTCCTTTHHHH
T ss_pred             HHHHHHHHHHHHccCCHHHHHHH
Confidence            99999999999877766665554

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=97.88  E-value=1.5e-05  Score=60.02  Aligned_cols=84  Identities=10%  Similarity=0.118  Sum_probs=63.3

Q ss_pred             hhhhHHHHHHHhcCC---CCCceecC------CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHH
Q 040816            3 MLESQTIKHMVEDGC---ADSVIPLL------NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMA   73 (128)
Q Consensus         3 a~~S~~i~~~l~~~~---~~~~Ipl~------~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~A   73 (128)
                      |..|...+.|+.+.-   ....|.++      +|+..+++.+++|+....-.                ++.+.+.+|+.|
T Consensus        55 aa~S~yF~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~----------------i~~~~v~~ll~~  118 (279)
T 3i3n_A           55 AAATEYFTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIR----------------VSTGSVHEVLEL  118 (279)
T ss_dssp             HHHCTTSGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEE----------------EETTTHHHHHHH
T ss_pred             HHcCHHHHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcc----------------cCHHHHHHHHHH
Confidence            345777888887642   24678888      89999999999999863321                334568899999


Q ss_pred             hhhccHHHHHHHHHHHHHHHhcCCCHHHH
Q 040816           74 ANYLDIKSLLDLLCQTVADMIKGKSPEEI  102 (128)
Q Consensus        74 A~~L~i~~L~~l~~~~ia~~i~gkt~eei  102 (128)
                      |++|+++.|.+.|+.++...+...+.-.+
T Consensus       119 A~~l~i~~L~~~c~~~L~~~l~~~n~~~i  147 (279)
T 3i3n_A          119 ADRFLLIRLKEFCGEFLKKKLHLSNCVAI  147 (279)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred             HHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence            99999999999999999888777665554

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=97.84  E-value=2.2e-06  Score=57.25  Aligned_cols=71  Identities=14%  Similarity=0.169  Sum_probs=57.2

Q ss_pred             hhhhHHHHHHHhcCCC-CCceecCC-CCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816            3 MLESQTIKHMVEDGCA-DSVIPLLN-VRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK   80 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~-~~~Ipl~~-v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~   80 (128)
                      |..|...+.|+..... ...|.+|+ ++..+++.+++|+..-.-                .++.+.+.+|+.||++|+|+
T Consensus        52 aa~S~yF~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~----------------~~~~~~v~~ll~~A~~l~i~  115 (125)
T 3ohu_A           52 AACSEYFWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKL----------------LLSRENIREVIRCAEFLRMH  115 (125)
T ss_dssp             HHHBHHHHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEE----------------EECTTTHHHHHHHHHHHTBS
T ss_pred             HHcCHHHHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCce----------------EECHHHHHHHHHHHHHhCCH
Confidence            4579999999987543 56799998 999999999999875221                24456689999999999999


Q ss_pred             HHHHHHHHH
Q 040816           81 SLLDLLCQT   89 (128)
Q Consensus        81 ~L~~l~~~~   89 (128)
                      .|.+.|+++
T Consensus       116 ~L~~~C~~~  124 (125)
T 3ohu_A          116 NLEDSCFSF  124 (125)
T ss_dssp             SCTTSSCCC
T ss_pred             HHHHHHHHh
Confidence            999888653

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=97.74  E-value=3.8e-05  Score=51.29  Aligned_cols=58  Identities=16%  Similarity=0.132  Sum_probs=47.2

Q ss_pred             CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHHHHHHHHHHHH
Q 040816           19 DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVAD   92 (128)
Q Consensus        19 ~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~   92 (128)
                      ...|.+++|+..+++.+++|+..-.-                .++.+.+.+|+.||++|+|+.|.+.|++++.+
T Consensus        60 ~~~i~l~~v~~~~f~~ll~fiYtg~~----------------~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           60 GQWALGEGISPSTFAQLLNFVYGESV----------------ELQPGELRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             EEEECCSSCCHHHHHHHHHHHTTCCE----------------EECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             CCEEEeCCCCHHHHHHHHHHHcCCCc----------------CcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            35688999999999999999875211                24566789999999999999999999998755

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=97.70  E-value=7.8e-05  Score=49.28  Aligned_cols=65  Identities=17%  Similarity=0.311  Sum_probs=53.1

Q ss_pred             hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816            3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL   82 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L   82 (128)
                      |..|...+.|+...  ...|.+++++..+++.+++|+..-.        ++       .++.+.+.+|+.||++|+|+.|
T Consensus        51 aa~S~~F~~~f~~~--~~~i~l~~~~~~~f~~~l~~~Ytg~--------~~-------~~~~~~~~~ll~~A~~l~i~~L  113 (116)
T 3fkc_A           51 SASSTYFHQLFSVA--GQVVELSFIRAEIFAEILNYIYSSK--------IV-------RVRSDLLDELIKSGQLLGVKFI  113 (116)
T ss_dssp             HHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHTTSC--------CC-------SCCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHcCHHHHHHHcCC--CCEEEeCCCCHHHHHHHHHhhcCCC--------cC-------CCCHHHHHHHHHHHHHhCcccc
Confidence            45789999999865  5689999999999999999987522        11       2456788999999999999998


Q ss_pred             HH
Q 040816           83 LD   84 (128)
Q Consensus        83 ~~   84 (128)
                      .+
T Consensus       114 ~~  115 (116)
T 3fkc_A          114 AA  115 (116)
T ss_dssp             HT
T ss_pred             Cc
Confidence            75

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=97.64  E-value=1e-05  Score=54.10  Aligned_cols=72  Identities=11%  Similarity=0.106  Sum_probs=57.1

Q ss_pred             hhhhHHHHHHHhcCCC-CCceecC-CCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHH
Q 040816            3 MLESQTIKHMVEDGCA-DSVIPLL-NVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIK   80 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~-~~~Ipl~-~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~   80 (128)
                      |..|...+.|+..... ...|.+| +|+...++.+++|+..-.-                .++.+.+.+|+.||++|+++
T Consensus        49 aa~S~yF~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~----------------~i~~~~v~~ll~~A~~~~~~  112 (124)
T 2ihc_A           49 AACSSYFHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKL----------------ILSKENVDEVCKCVEFLSVH  112 (124)
T ss_dssp             HHHBHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEE----------------EEETTTHHHHHHHHHHHTBS
T ss_pred             HHcCHHHHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCc----------------ccCHHHHHHHHHHHHHHCCH
Confidence            4579999999987542 4578886 8999999999999987322                13345689999999999999


Q ss_pred             HHHHHHHHHH
Q 040816           81 SLLDLLCQTV   90 (128)
Q Consensus        81 ~L~~l~~~~i   90 (128)
                      .|.+.|++++
T Consensus       113 ~L~~~C~~~l  122 (124)
T 2ihc_A          113 NIEESCFQFL  122 (124)
T ss_dssp             SCCGGGGGTC
T ss_pred             HHHHHHHHHH
Confidence            9999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1nexa1	70	a.157.1.1 (A:116-185) Centromere DNA-binding prote	5e-36
d1fs1b1	55	a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45,	3e-28
d2c9wc1	96	d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens	5e-21
d1hv2a_	99	d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomy	2e-19
d1fs1b2	61	d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Sk	4e-11
d1nexa2	72	d.42.1.1 (A:4-103) Centromere DNA-binding protein	3e-10

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 70

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  115 bits (291), Expect = 5e-36
 Identities = 41/70 (58%), Positives = 58/70 (82%)

Query: 52  LKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQND 111
           + +WD +F K+ Q+ L+++++AANYL+IK LLD  C+ VA+MI+G+SPEEIR+TF+I ND
Sbjct: 1   VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVND 60

Query: 112 FTPEEEEEIR 121
           FTPEEE  IR
Sbjct: 61  FTPEEEAAIR 70

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (239), Expect = 3e-28
 Identities = 36/53 (67%), Positives = 47/53 (88%)

Query: 55  WDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFH 107
           WD +F K+ Q TLF+L++AANYLDIK LLD+ C+TVA+MIKGK+PEEIR+TF+
Sbjct: 3   WDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN 55

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.7 bits (194), Expect = 5e-21
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 10/83 (12%)

Query: 1  AVMLESQTIKHMVEDGCADS-----VIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNW 55
             L S TIK M+      +      +    +   +LS V  Y    V    +  ++  +
Sbjct: 18 EHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEF 77

Query: 56 DVDFAKLGQDTLFDLLMAANYLD 78
           +       +   +LLMAAN+LD
Sbjct: 78 PIA-----PEIALELLMAANFLD 95

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 99

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (185), Expect = 2e-19
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 10/84 (11%)

Query: 1  AVMLESQTIKHMVEDGC--ADSVIPLLNVRGTILSMVIEYLKKHVE---AKTTEDDLKNW 55
          +  + S T+K M+E     +   I L      IL   +EYL  +++       +D++  +
Sbjct: 21 SAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF 80

Query: 56 DVDFAKLGQDTLFDLLMAANYLDI 79
          ++       +   +LL+AA+YL I
Sbjct: 81 EIP-----TEMSLELLLAADYLSI 99

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (126), Expect = 4e-11
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 1  AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVE 44
           +  +S TIK M+ED   D  +PL NV   IL  VI++   H +
Sbjct: 18 EIAKQSVTIKTMLEDLGMDP-VPLPNVNAAILKKVIQWCTHHKD 60

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (121), Expect = 3e-10
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 7/51 (13%)

Query: 1  AVMLESQTIKHMVEDGCADS-------VIPLLNVRGTILSMVIEYLKKHVE 44
           +   S  +K+ + D   D        V+P+ NVR ++L  VIE+ + H +
Sbjct: 18 KIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRD 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	99.97
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.92
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	99.87
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	99.63
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	99.62
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	98.46
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	98.23

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.2e-32  Score=169.73  Aligned_cols=70  Identities=59%  Similarity=1.062  Sum_probs=67.8

Q ss_pred             ccchhhhhhccChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcCCCCCCCHHHHHHHh
Q 040816           52 LKNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFHIQNDFTPEEEEEIR  121 (128)
Q Consensus        52 ~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~i~~d~t~eee~~i~  121 (128)
                      +++||++|++++...||+|+.|||||+|++|+++||++||++|+||||+|||++|||++||||||++++|
T Consensus         1 i~~wD~~F~~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikgkt~eeiR~~f~I~~D~t~eEe~~ir   70 (70)
T d1nexa1           1 VDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIR   70 (70)
T ss_dssp             CCHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCCCCCHHHHHTCC
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHccCCHHHHHHHhCCCCCCCHHHHHhcC
Confidence            4689999999999999999999999999999999999999999999999999999999999999999875

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.9e-26  Score=135.52  Aligned_cols=55  Identities=65%  Similarity=1.118  Sum_probs=53.8

Q ss_pred             cchhhhhhccChHHHHHHHHHhhhccHHHHHHHHHHHHHHHhcCCCHHHHHhhcC
Q 040816           53 KNWDVDFAKLGQDTLFDLLMAANYLDIKSLLDLLCQTVADMIKGKSPEEIRQTFH  107 (128)
Q Consensus        53 ~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L~~l~~~~ia~~i~gkt~eeir~~f~  107 (128)
                      |+||++|++++.+.||+|+.|||||+|++|+++||++||++|+||||||||++||
T Consensus         1 p~wD~~F~~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikgKt~eeiR~~fn   55 (55)
T d1fs1b1           1 PVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFN   55 (55)
T ss_dssp             CHHHHHHTCSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred             ChHhHHHHHcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcCCCHHHHHHHhC
Confidence            5899999999999999999999999999999999999999999999999999997

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3.2e-23  Score=135.91  Aligned_cols=74  Identities=27%  Similarity=0.488  Sum_probs=63.3

Q ss_pred             ChhhhhHHHHHHHhcCC--CCCceecCCCCHHHHHHHHHHHHhcccCCC---CcccccchhhhhhccChHHHHHHHHHhh
Q 040816            1 AVMLESQTIKHMVEDGC--ADSVIPLLNVRGTILSMVIEYLKKHVEAKT---TEDDLKNWDVDFAKLGQDTLFDLLMAAN   75 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~--~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~---~~~~~~~wd~~Fl~~~~~~l~~li~AA~   75 (128)
                      ++|++|+||++||++.+  .+.+||||+|+|.+|++|++||+||+.++.   ....+++|     ++++..||+|+.|||
T Consensus        21 ~~A~~S~tI~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~ef-----dvd~~~l~eLi~AAn   95 (99)
T d1hv2a_          21 SAAMISPTLKAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-----EIPTEMSLELLLAAD   95 (99)
T ss_dssp             HHHTTCHHHHHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-----CCCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCC-----CCCHHHHHHHHHHHh
Confidence            47999999999999875  367899999999999999999999998752   23344555     489999999999999


Q ss_pred             hccH
Q 040816           76 YLDI   79 (128)
Q Consensus        76 ~L~i   79 (128)
                      ||+|
T Consensus        96 yLdI   99 (99)
T d1hv2a_          96 YLSI   99 (99)
T ss_dssp             HHCC
T ss_pred             hhCC
Confidence            9996

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.8e-23  Score=134.44  Aligned_cols=73  Identities=26%  Similarity=0.416  Sum_probs=57.4

Q ss_pred             ChhhhhHHHHHHHhcCC-----CCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhh
Q 040816            1 AVMLESQTIKHMVEDGC-----ADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAAN   75 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~-----~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~   75 (128)
                      ++|++|+||++|+++.+     ...+||||+|+|.+|+||++||+||+.++..+.++++||     +++..+|+|+.|||
T Consensus        18 ~~A~~S~tI~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fd-----i~~~~l~eLi~AAn   92 (96)
T d2c9wc1          18 EHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFP-----IAPEIALELLMAAN   92 (96)
T ss_dssp             HHHTTSHHHHHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCC-----CCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCc-----CCHHHHHHHHHHHh
Confidence            47999999999998753     256899999999999999999999999876666777774     89999999999999


Q ss_pred             hcc
Q 040816           76 YLD   78 (128)
Q Consensus        76 ~L~   78 (128)
                      |||
T Consensus        93 yLd   95 (96)
T d2c9wc1          93 FLD   95 (96)
T ss_dssp             HHT
T ss_pred             hhc
Confidence            997

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.4e-16  Score=95.42  Aligned_cols=44  Identities=36%  Similarity=0.475  Sum_probs=40.2

Q ss_pred             ChhhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccC
Q 040816            1 AVMLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEA   45 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~   45 (128)
                      ++|++|+||++|+++.+ .++||||+|+|.+|+||++||+||+++
T Consensus        18 ~~a~~S~tI~~ml~~~~-~~~Ipl~~V~s~iL~kVieyc~~H~~d   61 (61)
T d1fs1b2          18 EIAKQSVTIKTMLEDLG-MDPVPLPNVNAAILKKVIQWCTHHKDD   61 (61)
T ss_dssp             GGGGTCHHHHHHHHHTC-CSSEECTTCCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhHHHHHHHhcCC-CCCcccCCcCHHHHHHHHHHHHHccCC
Confidence            48999999999999876 468999999999999999999999864

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=8.7e-17  Score=99.27  Aligned_cols=46  Identities=28%  Similarity=0.475  Sum_probs=37.7

Q ss_pred             ChhhhhHHHHHHHhcCCC-------CCceecCCCCHHHHHHHHHHHHhcccCC
Q 040816            1 AVMLESQTIKHMVEDGCA-------DSVIPLLNVRGTILSMVIEYLKKHVEAK   46 (128)
Q Consensus         1 ~aa~~S~~i~~~l~~~~~-------~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~   46 (128)
                      +||++|+||++||++.+.       ..+||||+|+|.+|+||++||+||+++|
T Consensus        18 ~~a~~S~tIk~ml~~~~~~~~~~~~~~~Ipl~~V~s~iL~kVieyc~~H~~dp   70 (72)
T d1nexa2          18 KIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHHRDSN   70 (72)
T ss_dssp             HHHTTSHHHHHTC-------------CEEECTTCCHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHHHhcCccccccCCCCcccCCCcCHHHHHHHHHHHHHccCCC
Confidence            489999999999998652       3479999999999999999999999986

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.3e-07  Score=60.17  Aligned_cols=70  Identities=19%  Similarity=0.197  Sum_probs=58.9

Q ss_pred             hhhhHHHHHHHhcCCCCCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccHHHH
Q 040816            3 MLESQTIKHMVEDGCADSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDIKSL   82 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i~~L   82 (128)
                      |..|..+++|+...  ...|.+|+|++.+++.+++|+..-+-                .++.+.+.+|+.||++|+|+.|
T Consensus        48 aa~S~~F~~lf~~~--~~~i~~~~v~~~~f~~ll~~~Ytg~i----------------~l~~~~v~~ll~~A~~l~~~~L  109 (121)
T d1buoa_          48 ACTSKMFEILFHRN--SQHYTLDFLSPKTFQQILEYAYTATL----------------QAKAEDLDDLLYAAEILEIEYL  109 (121)
T ss_dssp             HHHCHHHHHHTTSC--CSEEEECSSCHHHHHHHHHHHHHSCC----------------CCCGGGHHHHHHHHHHHTCHHH
T ss_pred             cccChhhhhhccCc--cceeecCCCCHHHHHHHHHheEcccc----------------CCcHHHHHHHHHHHHHhCCHHH
Confidence            56799999999764  45789999999999999999975221                1456678899999999999999


Q ss_pred             HHHHHHHH
Q 040816           83 LDLLCQTV   90 (128)
Q Consensus        83 ~~l~~~~i   90 (128)
                      .+.|++++
T Consensus       110 ~~~C~~~L  117 (121)
T d1buoa_         110 EEQCLKML  117 (121)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999987

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.4e-06  Score=55.70  Aligned_cols=72  Identities=11%  Similarity=0.200  Sum_probs=57.0

Q ss_pred             hhhhHHHHHHHhcCCC---CCceecCCCCHHHHHHHHHHHHhcccCCCCcccccchhhhhhccChHHHHHHHHHhhhccH
Q 040816            3 MLESQTIKHMVEDGCA---DSVIPLLNVRGTILSMVIEYLKKHVEAKTTEDDLKNWDVDFAKLGQDTLFDLLMAANYLDI   79 (128)
Q Consensus         3 a~~S~~i~~~l~~~~~---~~~Ipl~~v~~~~L~~Vi~~c~~h~~~~~~~~~~~~wd~~Fl~~~~~~l~~li~AA~~L~i   79 (128)
                      |..|..++.|+.....   ...+-+|+|++..++.++.|+..-.-                .++.+.+.+|+.||++|+|
T Consensus        45 a~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~----------------~i~~~~v~~ll~~A~~l~i  108 (122)
T d1r29a_          45 MACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRL----------------NLREGNIMAVMATAMYLQM  108 (122)
T ss_dssp             HHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCC----------------CCCTTTHHHHHHHHHHTTC
T ss_pred             hhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCee----------------cCchhhHHHHHHHHHHHCc
Confidence            5679999999976532   23344578999999999999985221                1445668999999999999


Q ss_pred             HHHHHHHHHHH
Q 040816           80 KSLLDLLCQTV   90 (128)
Q Consensus        80 ~~L~~l~~~~i   90 (128)
                      +.|.+.|.+++
T Consensus       109 ~~L~~~C~~~L  119 (122)
T d1r29a_         109 EHVVDTCRKFI  119 (122)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999886