Citrus Sinensis ID: 040846

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLSLRSTVQFVESNIACKLNG
ccEEccccccccccEEEEEcccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHccccccccccccccccccccccEEEEccHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccHHHHHHHHHcccccEEcccccHHHHHHHHHHHHHccc
cHHHHHHHHHccccEEEEEEEEEccccccccHHHHHHcccccEEEEEEEEccccccHHHHHHHHHHccccccccEEccEEcHHHcEEEccccHHHHHHHHHHHHHHHHHHHHccEEEEcccccccccHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHccc
NFLDLESAFGRLNGVMrtatgycggtlkkptyrevCEGITGHTEAVKVFYDKQTISYKSLCDIFwethdptnrnylnfgLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRlceslslrsTVQFVESNIACKLNG
NFLDLESAFGrlngvmrtatgycggtlkkptyREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLslrstvqfvesniacklng
NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLSLRSTVQFVESNIACKLNG
******SAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYYCN****************KLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLSLRSTVQFVESNIAC****
NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQ***********LNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLSLRSTVQFVESNIACKL**
NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEE*********IRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLSLRSTVQFVESNIACKLNG
NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLSLRSTVQFVESNIACKL**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLSLRSTVQFVESNIACKLNG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query166 2.2.26 [Sep-21-2011]
Q8TQV6188 Peptide methionine sulfox yes no 0.825 0.728 0.428 1e-27
Q8PUD6211 Peptide methionine sulfox yes no 0.825 0.649 0.4 2e-26
A3CUG3164 Peptide methionine sulfox yes no 0.873 0.884 0.391 5e-26
P54150258 Peptide methionine sulfox yes no 0.843 0.542 0.422 6e-26
Q12TP4153 Peptide methionine sulfox yes no 0.807 0.875 0.386 2e-25
P54151257 Peptide methionine sulfox N/A no 0.873 0.564 0.408 6e-25
Q9SEC2259 Peptide methionine sulfox N/A no 0.843 0.540 0.422 7e-25
Q6LYY1157 Peptide methionine sulfox yes no 0.825 0.872 0.398 1e-24
O26635169 Peptide methionine sulfox yes no 0.903 0.887 0.385 1e-24
Q9LY14202 Peptide methionine sulfox no no 0.873 0.717 0.401 2e-24
>sp|Q8TQV6|MSRA_METAC Peptide methionine sulfoxide reductase MsrA OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=msrA PE=3 SV=1 Back     alignment and function desciption
 Score =  122 bits (305), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 60/140 (42%), Positives = 87/140 (62%), Gaps = 3/140 (2%)

Query: 2   FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
           F  +E AF ++ GV+ TA GY GG  +KPTY +VC   TGH EAV+V +D + +SYK+L 
Sbjct: 38  FWGIEEAFRQVKGVVATAVGYSGGHFEKPTYEQVCTLDTGHAEAVRVIFDPKVVSYKNLL 97

Query: 62  DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESK--IRRQMKLNKRIVTKII 119
           D+FW+ HDPT +N     +    +S I+Y NEE++  A  SK  + +       IVT+I+
Sbjct: 98  DVFWKIHDPTTKNRQGPDVGKQYRSVIFYHNEEQKAAALASKEELEKAGVFKNPIVTEIV 157

Query: 120 QFDSEFCMAENQFQKYYLQK 139
              SEF MAE+  Q+Y+ +K
Sbjct: 158 PV-SEFYMAEDYHQQYFEKK 176
Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) (taxid: 188937)
EC: 1EC: .EC: 8EC: .EC: 4EC: .EC: 1EC: 1
>sp|Q8PUD6|MSRA_METMA Peptide methionine sulfoxide reductase MsrA OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|A3CUG3|MSRA_METMJ Peptide methionine sulfoxide reductase MsrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|P54150|MSRA4_ARATH Peptide methionine sulfoxide reductase A4, chloroplastic OS=Arabidopsis thaliana GN=MSR4 PE=1 SV=2 Back     alignment and function description
>sp|Q12TP4|MSRA_METBU Peptide methionine sulfoxide reductase MsrA OS=Methanococcoides burtonii (strain DSM 6242) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|P54151|MSRA_BRANA Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1 Back     alignment and function description
>sp|Q9SEC2|MSRA_LACSA Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1 Back     alignment and function description
>sp|Q6LYY1|MSRA_METMP Peptide methionine sulfoxide reductase MsrA OS=Methanococcus maripaludis (strain S2 / LL) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|O26635|MSRA_METTH Peptide methionine sulfoxide reductase MsrA OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=msrA PE=3 SV=1 Back     alignment and function description
>sp|Q9LY14|MSRA3_ARATH Peptide methionine sulfoxide reductase A3 OS=Arabidopsis thaliana GN=MSRA3 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query166
296087255 281 unnamed protein product [Vitis vinifera] 1.0 0.590 0.783 6e-73
298675433156 peptide methionine sulfoxide reductase [ 0.855 0.910 0.427 2e-26
20090291188 methionine sulfoxide reductase A [Methan 0.825 0.728 0.428 7e-26
330506754 327 peptide methionine sulfoxide reductase M 0.855 0.434 0.406 2e-25
336476650151 peptide methionine sulfoxide reductase [ 0.825 0.907 0.421 8e-25
355571063168 Peptide methionine sulfoxide reductase m 0.807 0.797 0.398 8e-25
452210924188 Peptide methionine sulfoxide reductase M 0.825 0.728 0.4 9e-25
21228501211 methionine sulfoxide reductase A [Methan 0.825 0.649 0.4 1e-24
126179030164 peptide methionine sulfoxide reductase [ 0.873 0.884 0.391 2e-24
375144373218 Peptide methionine sulfoxide reductase m 0.951 0.724 0.360 3e-24
>gi|296087255|emb|CBI33629.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  278 bits (711), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 147/166 (88%)

Query: 1   NFLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSL 60
            F  LE+AFGR++GV++TATGYCGGTLKKP+Y+EVCEG TGHTEAVKV YDK+ ISYKSL
Sbjct: 65  GFWGLEAAFGRVDGVVKTATGYCGGTLKKPSYKEVCEGRTGHTEAVKVMYDKRKISYKSL 124

Query: 61  CDIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQ 120
           CD FWE HDPTN+ +LNFGLSTH +SAI+Y NEE++KQAQESKIRRQMKLN+RIVTKII 
Sbjct: 125 CDAFWEAHDPTNKEFLNFGLSTHHRSAIFYVNEEQKKQAQESKIRRQMKLNRRIVTKIIA 184

Query: 121 FDSEFCMAENQFQKYYLQKCCRLCESLSLRSTVQFVESNIACKLNG 166
            DSEF +AEN  QKYYLQK  R+CESLSLRST QFVESNIACKLNG
Sbjct: 185 LDSEFFVAENLHQKYYLQKSYRVCESLSLRSTEQFVESNIACKLNG 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|298675433|ref|YP_003727183.1| peptide methionine sulfoxide reductase [Methanohalobium evestigatum Z-7303] gi|298288421|gb|ADI74387.1| peptide methionine sulfoxide reductase [Methanohalobium evestigatum Z-7303] Back     alignment and taxonomy information
>gi|20090291|ref|NP_616366.1| methionine sulfoxide reductase A [Methanosarcina acetivorans C2A] gi|74551535|sp|Q8TQV6.1|MSRA_METAC RecName: Full=Peptide methionine sulfoxide reductase MsrA; Short=Protein-methionine-S-oxide reductase; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase gi|19915290|gb|AAM04846.1| protein-methionine-S-oxide reductase [Methanosarcina acetivorans C2A] Back     alignment and taxonomy information
>gi|330506754|ref|YP_004383182.1| peptide methionine sulfoxide reductase MsrB/MsrA [Methanosaeta concilii GP6] gi|328927562|gb|AEB67364.1| peptide methionine sulfoxide reductase MsrB/MsrA [Methanosaeta concilii GP6] Back     alignment and taxonomy information
>gi|336476650|ref|YP_004615791.1| peptide methionine sulfoxide reductase [Methanosalsum zhilinae DSM 4017] gi|335930031|gb|AEH60572.1| peptide methionine sulfoxide reductase [Methanosalsum zhilinae DSM 4017] Back     alignment and taxonomy information
>gi|355571063|ref|ZP_09042333.1| Peptide methionine sulfoxide reductase msrA [Methanolinea tarda NOBI-1] gi|354826345|gb|EHF10561.1| Peptide methionine sulfoxide reductase msrA [Methanolinea tarda NOBI-1] Back     alignment and taxonomy information
>gi|452210924|ref|YP_007491038.1| Peptide methionine sulfoxide reductase MsrA [Methanosarcina mazei Tuc01] gi|452100826|gb|AGF97766.1| Peptide methionine sulfoxide reductase MsrA [Methanosarcina mazei Tuc01] Back     alignment and taxonomy information
>gi|21228501|ref|NP_634423.1| methionine sulfoxide reductase A [Methanosarcina mazei Go1] gi|74523545|sp|Q8PUD6.1|MSRA_METMA RecName: Full=Peptide methionine sulfoxide reductase MsrA; Short=Protein-methionine-S-oxide reductase; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase gi|20906986|gb|AAM32095.1| Peptide methionine sulfoxide reductase [Methanosarcina mazei Go1] Back     alignment and taxonomy information
>gi|126179030|ref|YP_001046995.1| peptide methionine sulfoxide reductase [Methanoculleus marisnigri JR1] gi|189030423|sp|A3CUG3.1|MSRA_METMJ RecName: Full=Peptide methionine sulfoxide reductase MsrA; Short=Protein-methionine-S-oxide reductase; AltName: Full=Peptide-methionine (S)-S-oxide reductase; Short=Peptide Met(O) reductase gi|125861824|gb|ABN57013.1| peptide methionine sulfoxide reductase [Methanoculleus marisnigri JR1] Back     alignment and taxonomy information
>gi|375144373|ref|YP_005006814.1| Peptide methionine sulfoxide reductase msrA [Niastella koreensis GR20-10] gi|361058419|gb|AEV97410.1| Peptide methionine sulfoxide reductase msrA [Niastella koreensis GR20-10] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query166
TAIR|locus:2117313258 PMSR4 "AT4G25130" [Arabidopsis 0.801 0.515 0.425 2.2e-25
TAIR|locus:2183419202 PMSR3 "AT5G07470" [Arabidopsis 0.939 0.772 0.385 1.6e-24
TAIR|locus:2151646202 PMSR1 "AT5G61640" [Arabidopsis 0.801 0.658 0.402 4.2e-24
DICTYBASE|DDB_G0276579147 msrA "peptide methionine sulfo 0.801 0.904 0.410 1.1e-23
UNIPROTKB|Q336R9263 MSRA4 "Peptide methionine sulf 0.801 0.505 0.425 1.4e-23
TIGR_CMR|DET_1241176 DET_1241 "peptide methionine s 0.807 0.761 0.386 1.4e-23
TAIR|locus:2183409218 PMSR2 "AT5G07460" [Arabidopsis 0.819 0.623 0.379 8e-21
UNIPROTKB|P0A744212 msrA "methionine sulfoxide red 0.807 0.632 0.405 2.1e-20
FB|FBgn0000565246 Eip71CD "Ecdysone-induced prot 0.915 0.617 0.378 2.1e-20
TAIR|locus:2060907254 MSRA5 "AT2G18030" [Arabidopsis 0.963 0.629 0.363 2.1e-20
TAIR|locus:2117313 PMSR4 "AT4G25130" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 57/134 (42%), Positives = 83/134 (61%)

Query:     2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
             F  +E A+ R+ GV +T  GY  G +  P+Y +VC G TGH E V+V YD +  S++SL 
Sbjct:   101 FWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLL 160

Query:    62 DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQF 121
             D+FW  HDPT  N     + T  +S IYY  +E+ + A+E+  ++Q  LNKRIVT+I+  
Sbjct:   161 DVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKILNKRIVTEILPA 220

Query:   122 DSEFCMAENQFQKY 135
              ++F  AEN  Q+Y
Sbjct:   221 -TKFYRAENYHQQY 233
GO:0006464 "cellular protein modification process" evidence=ISS
GO:0008113 "peptide-methionine (S)-S-oxide reductase activity" evidence=ISS;IDA
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA
GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IEA
GO:0019538 "protein metabolic process" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009416 "response to light stimulus" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0010114 "response to red light" evidence=TAS
GO:0010218 "response to far red light" evidence=TAS
GO:0034599 "cellular response to oxidative stress" evidence=IEP;IMP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0005739 "mitochondrion" evidence=IDA
TAIR|locus:2183419 PMSR3 "AT5G07470" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2151646 PMSR1 "AT5G61640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276579 msrA "peptide methionine sulfoxide reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q336R9 MSRA4 "Peptide methionine sulfoxide reductase A4, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1241 DET_1241 "peptide methionine sulfoxide reductase MsrA" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TAIR|locus:2183409 PMSR2 "AT5G07460" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0A744 msrA "methionine sulfoxide reductase A" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
FB|FBgn0000565 Eip71CD "Ecdysone-induced protein 28/29kD" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2060907 MSRA5 "AT2G18030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6VFD6MSRA_METM71, ., 8, ., 4, ., 1, 10.39850.82530.8726yesno
Q12TP4MSRA_METBU1, ., 8, ., 4, ., 1, 10.38680.80720.8758yesno
Q9CN40MSRA_PASMU1, ., 8, ., 4, ., 1, 10.36640.93370.8908yesno
Q6LYY1MSRA_METMP1, ., 8, ., 4, ., 1, 10.39850.82530.8726yesno
Q551H3MSRA_DICDI1, ., 8, ., 4, ., 1, 10.41040.80120.9047yesno
A4FYX5MSRA_METM51, ., 8, ., 4, ., 1, 10.38400.82530.8726yesno
O26635MSRA_METTH1, ., 8, ., 4, ., 1, 10.38560.90360.8875yesno
A3CUG3MSRA_METMJ1, ., 8, ., 4, ., 1, 10.39180.87340.8841yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.8.4LOW CONFIDENCE prediction!
4th Layer1.8.4.110.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
pfam01625147 pfam01625, PMSR, Peptide methionine sulfoxide redu 3e-48
COG0225174 COG0225, MsrA, Peptide methionine sulfoxide reduct 4e-39
PRK13014186 PRK13014, PRK13014, methionine sulfoxide reductase 2e-36
PRK00058213 PRK00058, PRK00058, methionine sulfoxide reductase 3e-36
PRK14054172 PRK14054, PRK14054, methionine sulfoxide reductase 4e-36
PRK05550283 PRK05550, PRK05550, bifunctional methionine sulfox 1e-34
TIGR00401149 TIGR00401, msrA, methionine-S-sulfoxide reductase 5e-33
PRK14018 521 PRK14018, PRK14018, trifunctional thioredoxin/meth 5e-18
>gnl|CDD|216614 pfam01625, PMSR, Peptide methionine sulfoxide reductase Back     alignment and domain information 
 Score =  152 bits (387), Expect = 3e-48
 Identities = 60/135 (44%), Positives = 79/135 (58%), Gaps = 1/135 (0%)

Query: 6   ESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFW 65
           E+ F +L GV+ T  GY GG  + PTY EVC G TGH EAV+V YD   ISY+ L ++F+
Sbjct: 14  EAVFEKLPGVISTEVGYAGGDTENPTYEEVCSGTTGHAEAVRVTYDPSKISYEELLEVFF 73

Query: 66  ETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEF 125
           E HDPT+ N       T  +SAI+Y +EE++K A+ S  R Q K  K IVT+I      F
Sbjct: 74  EIHDPTDLNRQGNDRGTQYRSAIFYHDEEQKKIAEASLERLQKKFGKPIVTEIEPLT-TF 132

Query: 126 CMAENQFQKYYLQKC 140
             AE+  Q Y  +  
Sbjct: 133 YPAEDYHQDYLAKNP 147

This enzyme repairs damaged proteins. Methionine sulfoxide in proteins is reduced to methionine. Length = 147
>gnl|CDD|223303 COG0225, MsrA, Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|237269 PRK13014, PRK13014, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|234604 PRK00058, PRK00058, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|237597 PRK14054, PRK14054, methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>gnl|CDD|235499 PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>gnl|CDD|129496 TIGR00401, msrA, methionine-S-sulfoxide reductase Back     alignment and domain information
>gnl|CDD|184456 PRK14018, PRK14018, trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 166
COG0225174 MsrA Peptide methionine sulfoxide reductase [Postt 100.0
PRK14054172 methionine sulfoxide reductase A; Provisional 100.0
PRK13014186 methionine sulfoxide reductase A; Provisional 100.0
TIGR00401149 msrA methionine-S-sulfoxide reductase. This model 100.0
PF01625155 PMSR: Peptide methionine sulfoxide reductase; Inte 100.0
PRK00058213 methionine sulfoxide reductase A; Provisional 100.0
KOG1635191 consensus Peptide methionine sulfoxide reductase [ 100.0
PRK05528156 methionine sulfoxide reductase A; Provisional 100.0
PRK05550283 bifunctional methionine sulfoxide reductase B/A pr 100.0
PRK14018 521 trifunctional thioredoxin/methionine sulfoxide red 100.0
PF0040362 HMA: Heavy-metal-associated domain; InterPro: IPR0 93.1
COG260871 CopZ Copper chaperone [Inorganic ion transport and 84.95
PF02682202 AHS1: Allophanate hydrolase subunit 1; InterPro: I 81.48
COG2049223 DUR1 Allophanate hydrolase subunit 1 [Amino acid t 80.02
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-71  Score=440.52  Aligned_cols=144  Identities=42%  Similarity=0.663  Sum_probs=141.5

Q ss_pred             CcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCCC
Q 040846            2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLS   81 (166)
Q Consensus         2 FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G   81 (166)
                      |||+|++|+++|||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++||||+.||||+|+|
T Consensus        16 FWg~E~~f~~i~GV~~t~~GYagG~~~nptY~~Vcsg~TgHaE~V~V~yDp~~isy~~LL~~ff~ihDPT~~nrQGnD~G   95 (174)
T COG0225          16 FWGVEAYFEQIPGVLSTVSGYAGGHTPNPTYEEVCSGTTGHAEAVEVTYDPKVISYEELLEVFFEIHDPTSLNRQGNDRG   95 (174)
T ss_pred             ccchHHHHhhCCCeEEEeeeEcCCCCCCCChhhccCCCCCceEEEEEEeCCccccHHHHHHHHheecCCCCCCccCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeccCCHHHHHHHHHHHHHHHhh--cCCceEEEEEecCCCccccchhHHHHHHhCCcccccc
Q 040846           82 THLKSAIYYCNEEERKQAQESKIRRQMK--LNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCES  146 (166)
Q Consensus        82 ~qYrs~I~~~~~eq~~~a~~~~~~~~~~--~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~~c~~  146 (166)
                      +||||+||++|++|+++|+++++++++.  +++||+|||+|+. +||+||||||+||+|||.+||++
T Consensus        96 tqYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI~p~~-~Fy~AEeYHQ~Yl~KNP~gY~~~  161 (174)
T COG0225          96 TQYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEIEPAK-NFYPAEEYHQDYLKKNPNGYCHI  161 (174)
T ss_pred             ccceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEeeccc-cCcccHHHHHHHHHhCCCCceee
Confidence            9999999999999999999999999883  6779999999999 99999999999999999999997

>PRK14054 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK13014 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>TIGR00401 msrA methionine-S-sulfoxide reductase Back     alignment and domain information
>PF01625 PMSR: Peptide methionine sulfoxide reductase; InterPro: IPR002569 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine [] Back     alignment and domain information
>PRK00058 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK05528 methionine sulfoxide reductase A; Provisional Back     alignment and domain information
>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional Back     alignment and domain information
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional Back     alignment and domain information
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures Back     alignment and domain information
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02682 AHS1: Allophanate hydrolase subunit 1; InterPro: IPR003833 Allophanate hydrolase catalyses the second reaction in an ATP-dependent, two-step degradation of urea to ammonia and C02 Back     alignment and domain information
>COG2049 DUR1 Allophanate hydrolase subunit 1 [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
2j89_A261 Functional And Structural Aspects Of Poplar Cytosol 4e-24
1ff3_A211 Structure Of The Peptide Methionine Sulfoxide Reduc 1e-23
2gt3_A212 Solution Structure And Dynamics Of The Reduced Form 1e-23
2iem_A211 Solution Structure Of An Oxidized Form (Cys51-Cys19 9e-23
1fvg_A199 Crystal Structure Of Bovine Peptide Methionine Sulf 1e-18
1fva_A217 Crystal Structure Of Bovine Methionine Sulfoxide Re 2e-18
2l90_A212 Solution Structure Of Murine Myristoylated Msra Len 6e-18
4gwb_A168 Crystal Structure Of Putative Peptide Methionine Su 6e-15
3bqf_A194 Structure Of The Central Domain (Msra) Of Neisseria 2e-14
3bqe_A194 Structure Of The Central Domain (Msra) Of Neisseria 3e-14
3bqh_A193 Structure Of The Central Domain (Msra) Of Neisseria 3e-14
3bqg_A194 Structure Of The Central Domain (msra) Of Neisseria 7e-14
1nwa_A203 Structure Of Mycobacterium Tuberculosis Methionine 6e-12
3e0m_A 313 Crystal Structure Of Fusion Protein Of Msra And Msr 8e-10
3pil_A184 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 1e-07
3pim_A187 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 1e-07
3pin_B183 Crystal Structure Of Mxr1 From Saccharomyces Cerevi 4e-07
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And Plastidial Type A Methionine Sulfoxide Reductases Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (266), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 2   FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
           F  +E AF R+ GV +T  GY  G L  PTY +V  G T H E V+V YD +  S+ +L 
Sbjct: 104 FWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTGTTNHNEVVRVQYDPKECSFDTLI 163
Query: 62  DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQF 121
           D+ W  HDPT  N     + T  +S IYY   E+ K A+ES  R+Q  LN++IVT+I+  
Sbjct: 164 DVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESLERQQKLLNRKIVTEILP- 222
Query: 122 DSEFCMAENQFQKYYLQKCCRL 143
             +F  AE ++ + YL K  R 
Sbjct: 223 AKKFYRAE-EYHQQYLAKGGRF 243
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase From Escherichia Coli Length = 211 Back     alignment and structure
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of Methionine Sulfoxide Reductase A From Escherichia Coli, A 23 Kda Protein Length = 212 Back     alignment and structure
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of E. Coli Methionine Sulfoxide Reductase A (Msra) Length = 211 Back     alignment and structure
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide Reductase Length = 199 Back     alignment and structure
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase Length = 217 Back     alignment and structure
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra Length = 212 Back     alignment and structure
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide Reductase From Sinorhizobium Meliloti 1021 Length = 168 Back     alignment and structure
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Complex With A Substrate) Length = 194 Back     alignment and structure
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Reduced Form) Length = 194 Back     alignment and structure
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria Meningitidis Pilb (Oxidized Form) Length = 193 Back     alignment and structure
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria Meningitidis Pilb (sulfenic Acid Form) Length = 194 Back     alignment and structure
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine Sulfoxide Reductase A In Complex With Protein-Bound Methionine Length = 203 Back     alignment and structure
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb Length = 313 Back     alignment and structure
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Reduced Form Length = 184 Back     alignment and structure
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Unusual Oxidized Form Length = 187 Back     alignment and structure
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In Complex With Trx2 Length = 183 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query166
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 4e-51
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 9e-47
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 2e-45
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 3e-44
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 9e-43
3pim_A187 Peptide methionine sulfoxide reductase; methionine 9e-42
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 2e-39
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Length = 261 Back     alignment and structure
 Score =  163 bits (414), Expect = 4e-51
 Identities = 58/134 (43%), Positives = 78/134 (58%), Gaps = 5/134 (3%)

Query: 5   LESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIF 64
           +E AF R+ GV +T  GY  G L  PTY +VC G T H E V+V YD +  S+ +L D+ 
Sbjct: 107 VELAFQRVPGVTKTEVGYTQGLLHNPTYEDVCTGTTNHNEVVRVQYDPKECSFDTLIDVL 166

Query: 65  WETHDPT--NRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFD 122
           W  HDPT  NR   + G  T  +S IYY   E+ K A+ES  R+Q  LN++IVT+I+   
Sbjct: 167 WARHDPTTLNRQGNDVG--TQYRSGIYYYTPEQEKAAKESLERQQKLLNRKIVTEILPAK 224

Query: 123 SEFCMAENQFQKYY 136
            +F  AE   Q+Y 
Sbjct: 225 -KFYRAEEYHQQYL 237
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Length = 199 Back     alignment and structure
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Length = 211 Back     alignment and structure
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Length = 193 Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Length = 313 Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Length = 187 Back     alignment and structure
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Length = 203 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
3bqh_A193 PILB, peptide methionine sulfoxide reductase MSRA/ 100.0
1fvg_A199 Peptide methionine sulfoxide reductase; oxidoreduc 100.0
1ff3_A211 Peptide methionine sulfoxide reductase; alpha beta 100.0
3pim_A187 Peptide methionine sulfoxide reductase; methionine 100.0
4gwb_A168 Peptide methionine sulfoxide reductase MSRA 3; str 100.0
2j89_A261 Methionine sulfoxide reductase A; MSRA, poplar, ox 100.0
1nwa_A203 Peptide methionine sulfoxide reductase MSRA; oxido 100.0
3e0m_A 313 Peptide methionine sulfoxide reductase MSRA/MSRB 1 100.0
3dxs_X74 Copper-transporting ATPase RAN1; CXXC motif, ferre 94.36
1p6t_A151 Potential copper-transporting ATPase; COPA, P-type 92.69
2l3m_A71 Copper-ION-binding protein; structural genomics, c 92.5
1cpz_A68 Protein (COPZ); copper chaperone, metal transport, 91.87
1osd_A72 MERP, hypothetical protein MERP; mercury resistanc 91.66
2g9o_A90 Copper-transporting ATPase 1; menkes disease, solu 91.41
2ew9_A149 Copper-transporting ATPase 2; copper trafficking, 90.95
2qif_A69 Copper chaperone COPZ; tetranuclear Cu(I) cluster; 90.87
3cjk_B75 Copper-transporting ATPase 1; HAH1, ATP7B, menkes 90.76
2ofg_X111 Zinc-transporting ATPase; ferredoxin-like fold, be 89.94
1aw0_A72 Menkes copper-transporting ATPase; copper-binding 89.89
1opz_A76 Potential copper-transporting ATPase; mutation, fo 89.47
1yjr_A75 Copper-transporting ATPase 1; metallochaperone, pr 89.44
4a4j_A69 Pacszia, cation-transporting ATPase PACS; hydrolas 89.38
1y3j_A77 Copper-transporting ATPase 1; ferrodoxin-like fold 89.33
2ldi_A71 Zinc-transporting ATPase; metal homeostasis, metal 89.08
2xmw_A71 PACS-N, cation-transporting ATPase PACS; hydrolase 88.51
1q8l_A84 Copper-transporting ATPase 1; metal binding protei 88.15
1kvi_A79 Copper-transporting ATPase 1; menkes, Cu-protein, 88.12
1yg0_A66 COP associated protein; open-faced beta-sandwich, 86.64
2kt2_A69 Mercuric reductase; nmera, MERA, HMA domain, mercu 85.95
2kwa_A101 Kinase A inhibitor; bacterial signal transduction, 85.59
1jww_A80 Potential copper-transporting ATPase; beta-alpha-b 85.26
2rop_A202 Copper-transporting ATPase 2; wilson protein, mobi 83.87
2phc_B225 Uncharacterized protein PH0987; structural genomic 81.33
1fvq_A72 Copper-transporting ATPase; APO-CCC2A, hydrolase; 80.35
>3bqh_A PILB, peptide methionine sulfoxide reductase MSRA/MSRB; methionine sulfoxide reductase A, oxidized form, elect transport; 1.95A {Neisseria meningitidis} PDB: 3bqe_A 3bqf_A* 3bqg_A Back     alignment and structure
Probab=100.00  E-value=1.6e-69  Score=436.83  Aligned_cols=146  Identities=30%  Similarity=0.497  Sum_probs=141.7

Q ss_pred             CcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCCC
Q 040846            2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLS   81 (166)
Q Consensus         2 FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G   81 (166)
                      |||+|+.|+++|||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++||||+.||||+|+|
T Consensus        12 FWg~E~~F~~~~GV~~t~vGYagG~~~nPtY~~Vc~g~tGHaEaV~V~yDp~~isy~~LL~~f~~~hDPT~~nrQG~D~G   91 (193)
T 3bqh_A           12 FWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLSLDDILQYFFRVVDPTSLNKQGNDTG   91 (193)
T ss_dssp             HHHHHHHHHTSTTEEEEEEEEESCSSSSCCHHHHHHSCCCCEEEEEEEEETTTCCHHHHHHHHHHHSCCBGGGSSSCCTT
T ss_pred             eeehHHHHhcCCCEEEEEEeccCCcCCCCChheeecCCCCCeEEEEEEECCCcCCHHHHHHHHHHhcCCCCCCCCCCCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeccCCHHHHHHHHHHHHHHHhhcCCceEEEEEecCCCccccchhHHHHHHhCCcccccccc
Q 040846           82 THLKSAIYYCNEEERKQAQESKIRRQMKLNKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESLS  148 (166)
Q Consensus        82 ~qYrs~I~~~~~eq~~~a~~~~~~~~~~~~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~~c~~~~  148 (166)
                      +||||+|||+|++|+++|+++++++++.++++|+|+|+|+. +||+||+|||+||.|||.+||++..
T Consensus        92 ~QYRS~If~~~~~Q~~~A~~~~~~~~~~~~~~IvTeI~p~~-~Fy~AE~yHQ~Yl~knp~~Yc~~~~  157 (193)
T 3bqh_A           92 TQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLVVENEPLK-NFYDAEEYHQDYLIKNPNGYCHIDI  157 (193)
T ss_dssp             CTTCEEEEESSHHHHHHHHHHHHHHHTTCSSCBCCEEEECC-CEEECCGGGTTHHHHCTTCCC---C
T ss_pred             ccceeeeecCCHHHHHHHHHHHHHHHHHhCCCeEEEEecCC-CeeEcHHHHHHHHHhCCCCceeeec
Confidence            99999999999999999999999999999999999999999 9999999999999999999999854
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A* Back     alignment and structure
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A Back     alignment and structure
>3pim_A Peptide methionine sulfoxide reductase; methionine-S-sulfoxide reductase, oxidoreductase; 1.90A {Saccharomyces cerevisiae} PDB: 3pil_A 3pin_B Back     alignment and structure
>4gwb_A Peptide methionine sulfoxide reductase MSRA 3; structural genomics, protein structure initiative, nysgrc, R PSI-biology; 1.20A {Sinorhizobium meliloti} Back     alignment and structure
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase; 1.7A {Populus trichocarpa} Back     alignment and structure
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase, product complex, structural genomics, PSI, protein structure initiative; 1.50A {Mycobacterium tuberculosis} SCOP: d.58.28.1 Back     alignment and structure
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae} Back     alignment and structure
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0 Back     alignment and structure
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Back     alignment and structure
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Back     alignment and structure
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Back     alignment and structure
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Back     alignment and structure
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Back     alignment and structure
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Back     alignment and structure
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Back     alignment and structure
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Back     alignment and structure
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Back     alignment and structure
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A Back     alignment and structure
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A Back     alignment and structure
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A Back     alignment and structure
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A Back     alignment and structure
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Back     alignment and structure
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Back     alignment and structure
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Back     alignment and structure
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Back     alignment and structure
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Back     alignment and structure
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Back     alignment and structure
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis} Back     alignment and structure
>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A Back     alignment and structure
>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Back     alignment and structure
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1 Back     alignment and structure
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 166
d1ff3a_211 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 4e-27
d1fvga_192 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 1e-25
d1nwaa_168 d.58.28.1 (A:) Peptide methionine sulfoxide reduct 1e-13
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

 Score = 99.0 bits (246), Expect = 4e-27
 Identities = 56/140 (40%), Positives = 71/140 (50%), Gaps = 6/140 (4%)

Query: 2   FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLC 61
           F  +E  F +L GV  TA GY GG    PTYREVC G TGH EAV++ YD   ISY+ L 
Sbjct: 52  FWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLL 111

Query: 62  DIFWETHDPTNRNYLNFGLSTHLKSAIYYCNEEERKQAQESKIRRQMKL-----NKRIVT 116
            +FWE HDP           T  +SAIY    E+   A+ S  R Q  +     ++ I T
Sbjct: 112 QVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITT 171

Query: 117 KIIQFDSEFCMAENQFQKYY 136
           +I      F  AE+  Q+Y 
Sbjct: 172 EIANAT-PFYYAEDDHQQYL 190
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Length = 192 Back     information, alignment and structure
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 168 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query166
d1ff3a_211 Peptide methionine sulfoxide reductase {Escherichi 100.0
d1fvga_192 Peptide methionine sulfoxide reductase {Cow (Bos t 100.0
d1nwaa_168 Peptide methionine sulfoxide reductase {Mycobacter 100.0
d1osda_72 Mercuric ion binding protein MerP {Ralstonia metal 96.75
d1cpza_68 Copper chaperone {Enterococcus hirae [TaxId: 1354] 96.51
d2aw0a_72 Menkes copper-transporting ATPase {Human (Homo sap 96.51
d1q8la_84 Menkes copper-transporting ATPase {Human (Homo sap 96.3
d2qifa169 Copper chaperone {Bacillus subtilis, CopZ [TaxId: 96.2
d1p6ta279 Potential copper-translocating P-type ATPase CopA 96.0
d1kvja_79 Menkes copper-transporting ATPase {Human (Homo sap 95.93
d1p6ta172 Potential copper-translocating P-type ATPase CopA 95.83
d2ggpb172 Copper transporter domain ccc2a {Baker's yeast (Sa 94.19
d2phcb284 Uncharacterized protein PH0987 {Pyrococcus horikos 93.65
d1mwza_73 Metal ion-transporting ATPase ZntA, N-terminal dom 82.06
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Peptide methionine sulfoxide reductase
family: Peptide methionine sulfoxide reductase
domain: Peptide methionine sulfoxide reductase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.1e-67  Score=426.30  Aligned_cols=145  Identities=39%  Similarity=0.626  Sum_probs=141.5

Q ss_pred             CcchhhhhccCCCceEeeeeecCCcCCCCCchhhccCCCCcEEEEEEEEcCCCCCHHHHHHHHHhcCCCCCCCCCCCCCC
Q 040846            2 FLDLESAFGRLNGVMRTATGYCGGTLKKPTYREVCEGITGHTEAVKVFYDKQTISYKSLCDIFWETHDPTNRNYLNFGLS   81 (166)
Q Consensus         2 FW~~E~~f~~l~GV~~t~~GYagG~~~~PtY~~Vc~g~tgh~EaV~V~yDp~~is~~~Ll~~f~~~~dPt~~~~Qg~d~G   81 (166)
                      |||+|+.|++++||++|+|||+||.++||||++||+|.|||+|+|+|+|||++|||++||++||++||||+.||||+|+|
T Consensus        52 FWg~E~~f~~l~GV~~t~~GYaGG~~~nPtY~~VcsG~TgH~E~V~V~yDp~~isy~~Ll~~F~~~hDPT~~n~Qg~D~G  131 (211)
T d1ff3a_          52 FWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYDPSVISYEQLLQVFWENHDPAQGMRQGNDHG  131 (211)
T ss_dssp             HHHHHHHHHTSTTEEEEEEEEESSSCSSCCHHHHHHTCSCCEEEEEEEECTTTSCHHHHHHHHHHSSCTTSSSEETTEES
T ss_pred             hhhhhHHHhcCCCEEEEeceecCCCCCCCCccccccCCCCCceeEEEEeccccCCHHHHHHHHHHhcCccccccccccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeeeccCCHHHHHHHHHHHHHHHhhc-----CCceEEEEEecCCCccccchhHHHHHHhCCccccccc
Q 040846           82 THLKSAIYYCNEEERKQAQESKIRRQMKL-----NKRIVTKIIQFDSEFCMAENQFQKYYLQKCCRLCESL  147 (166)
Q Consensus        82 ~qYrs~I~~~~~eq~~~a~~~~~~~~~~~-----~~~i~teI~p~~~~F~~AE~yHQ~Y~~k~p~~~c~~~  147 (166)
                      +||||+||++|++|+++|+++++++++++     +++|+|+|+|+. +||+||+|||+||+|||.+||++.
T Consensus       132 ~QYRSaIf~~~~eQ~~~A~~~i~~~q~~~~~~~~~~~IvTeI~~~~-~Fy~AEeyHQ~Yl~KNP~~YC~~~  201 (211)
T d1ff3a_         132 TQYRSAIYPLTPEQDAAARASLERFQAAMLAADDDRHITTEIANAT-PFYYAEDDHQQYLHKNPYGYCGIG  201 (211)
T ss_dssp             GGGCCEECCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEECCCC-CEEECCGGGTTHHHHSCCCCCCCC
T ss_pred             ccccceeeechhHHHHHHHHHHHHHHHHHhhccCCCceEEEEecCC-CeeeCHHHHHHHHHhCCCCCCCCC
Confidence            99999999999999999999999998753     689999999999 999999999999999999999984
>d1fvga_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Back     information, alignment and structure
>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Back     information, alignment and structure
>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Back     information, alignment and structure
>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2phcb2 d.74.5.1 (B:2-85) Uncharacterized protein PH0987 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure