Citrus Sinensis ID: 040848

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-

MNKPKKLCTTTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGTAIPQEVDKDKEIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID

cccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccHHHHHccccEEEccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHEEEEEEcccccEEEEEEEcccccEEEcccccccEEccccccccccEEEEEEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHcccEEEEccccccccccccEEEEcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEccccHHHHHHHHHHEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

cccccHccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccccccEEEEEccccccccccccHHHHHHHHcccccccccEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHcEEEEEEccccEEEEEEEcccccEEEEccccEEEEEEccccccccEEEEEEEEEEEEEEEcccccccEEEEEEEEEEccEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccEEEEcccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEEHHHHHcccccccccccccccccccccccccccccHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

mnkpkklcTTTMKILVFTLLFISSAhsfylpgvaprdfqrhdplnvkvnklsstktqlpydyyflkyckpakivNSAENLgevlrgdriensvyEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLIldnlpvavlrqrrdgsqsttyehgfrvgfkgnyqgskeeKYFINNHLSFRVMYhkdretdsarivgfevtpnsinheykewseknpqvttcnkdtknlvqgtaipqevdkdkeiVFTYDVTfkesdikwasrWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQEEAQEEtgwklvhgdvfraptnaGLLCVYVGTGVQIFGMTLVTMIFALLGflspsnrggLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIwgeqssgavpfgTMFALVFLWFGISVPLVFVGsylgfkkpaiedpvktnkiprqipeqawymtpVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID

mnkpkklcTTTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPlnvkvnklsstktqlpYDYYFLKYCKPAKIVNSAenlgevlrgdrIENSVYEFemredlsckVACRVKVDaesaknfkekiddeyrvnlildnlpvavlrqrrdgsqsttyehgfrvgfkgnyqgSKEEKYFINNHLSFRVMYHKDRETDSARIVGFevtpnsinheykewseknpqvttcnkdtknlvqgtaipqevdkdkeIVFTYdvtfkesdikwaSRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFkkpaiedpvktnkIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID

MNKPKKLCTTTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGTAIPQEVDKDKEIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLetqeeaqeetGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQfyyifgflfivfvilliTCAEITIVLCYFQLCSEDYHWWWRSYLTAGssalylflysifyffTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID

******LCTTTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRR*****TTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEW******VTTCNKDTKNLVQGTAIPQEVDKDKEIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSS****

***********MKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDYYFLKYCKPAK*******LGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTK************DKDKEIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIA*************ETGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID

MNKPKKLCTTTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGTAIPQEVDKDKEIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLE*********GWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID

******LCTTTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYK******PQVTTCNKDTK*L*QGTAIPQEVDKDKEIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID

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SSSSSSSSSSSSSiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiii

SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		641	2.2.26 [Sep-21-2011]
Q92544		642	Transmembrane 9 superfami	yes	no	0.954	0.953	0.510	0.0
Q5RDY2		642	Transmembrane 9 superfami	yes	no	0.954	0.953	0.510	0.0
Q8BH24		643	Transmembrane 9 superfami	yes	no	0.948	0.945	0.503	0.0
A5D7E2		642	Transmembrane 9 superfami	yes	no	0.954	0.953	0.505	0.0
Q4KLL4		643	Transmembrane 9 superfami	yes	no	0.948	0.945	0.506	0.0
Q55FP0		641	Putative phagocytic recep	yes	no	0.940	0.940	0.522	0.0
P58021		662	Transmembrane 9 superfami	no	no	0.931	0.901	0.493	1e-176
Q99805		663	Transmembrane 9 superfami	no	no	0.932	0.901	0.493	1e-176
Q66HG5		663	Transmembrane 9 superfami	no	no	0.932	0.901	0.487	1e-176
Q5R8Y6		663	Transmembrane 9 superfami	no	no	0.932	0.901	0.493	1e-176

>sp\|Q92544\|TM9S4_HUMAN Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2	Back alignment and function desciption

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/649 (51%), Positives = 463/649 (71%), Gaps = 37/649 (5%)

Query: 13  KILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDYYFLKYCKPAK 72
            +L+F+L+  +SA  FY+PGVAP +F ++DP+ +K  KL+S++TQLPY+YY L +C+P+K
Sbjct: 11  SLLLFSLMCETSA--FYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPSK 68

Query: 73  IVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACR-----VKVDAESAKNFKEKIDDE 127
           I   AENLGEVLRGDRI N+ ++  M  +  C+V C      V +  E ++   E+I ++
Sbjct: 69  ITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCSQSNKPVTLTVEQSRLVAERITED 128

Query: 128 YRVNLILDNLPVAVLRQRRDGSQS--------TTYEHGFRVGFKGNYQGSKEEKYFINNH 179
           Y V+LI DNLPVA   +      S          +EHG+R+GF      +   K +++NH
Sbjct: 129 YYVHLIADNLPVATRLELYSNRDSDDKKKEKDVQFEHGYRLGF------TDVNKIYLHNH 182

Query: 180 LSFRVMYHK-DRETDSA---RIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGT 235
           LSF + YH+ D E D     R+V FEV P SI  E  +  EK    ++C      L +GT
Sbjct: 183 LSFILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKADEK----SSCT-----LPEGT 233

Query: 236 -AIPQEVD--KDKEIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFL 292
            + PQE+D  K+ ++ FTY V ++ESDIKWASRWDTYL M+D QIHWFSIINS+++V FL
Sbjct: 234 NSSPQEIDPTKENQLYFTYSVHWEESDIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFL 293

Query: 293 SGMVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLVHGDVFRAPTNAGLLCVYVGTGVQ 352
           SG+++MI++RTL +DIANYN+ +  E+  EE+GWKLVHGDVFR P    +L   +G+G+Q
Sbjct: 294 SGILSMIIIRTLRKDIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQ 353

Query: 353 IFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNT 412
           +F M L+ +  A+LG LSPS+RG LMT    L++FMG+F G+++ RLY+  KG  WK+  
Sbjct: 354 LFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGA 413

Query: 413 LKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFK 472
             TA ++PG++F + FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLV++G Y GF+
Sbjct: 414 FCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFR 473

Query: 473 KPAIEDPVKTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYI 532
           K   ++PV+TN+IPRQIPEQ WYM     IL+ GILPFGA+FIELFFI ++IW NQFYY+
Sbjct: 474 KQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYL 533

Query: 533 FGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTK 592
           FGFLF+VF+IL+++C++I+IV+ YFQLC+EDY WWWR++L +G SA Y+ +Y+IFYF  K
Sbjct: 534 FGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNK 593

Query: 593 LEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 641
           L+I + +  +LYFGY  ++  +F++LTGTIGFYA + FVRKIY++VKID
Sbjct: 594 LDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642

Homo sapiens (taxid: 9606)

>sp\|Q5RDY2\|TM9S4_PONAB Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1	Back alignment and function description

>sp\|Q8BH24\|TM9S4_MOUSE Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1	Back alignment and function description

>sp\|A5D7E2\|TM9S4_BOVIN Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2	Back alignment and function description

>sp\|Q4KLL4\|TM9S4_RAT Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1	Back alignment and function description

>sp\|Q55FP0\|PHG1A_DICDI Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1	Back alignment and function description

>sp\|P58021\|TM9S2_MOUSE Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

>sp\|Q99805\|TM9S2_HUMAN Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1	Back alignment and function description

>sp\|Q66HG5\|TM9S2_RAT Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

>sp\|Q5R8Y6\|TM9S2_PONAB Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
255572953		639	Endosomal P24A protein precursor, putati	0.995	0.998	0.913	0.0
356522474		640	PREDICTED: transmembrane 9 superfamily m	0.996	0.998	0.901	0.0
225442268		634	PREDICTED: transmembrane 9 superfamily m	0.981	0.992	0.906	0.0
356526019		640	PREDICTED: transmembrane 9 superfamily m	0.993	0.995	0.902	0.0
224135001		639	predicted protein [Populus trichocarpa]	0.978	0.981	0.901	0.0
307136280		643	endosomal protein [Cucumis melo subsp. m	0.965	0.962	0.901	0.0
15231359		641	protein transmembrane nine 7 [Arabidopsi	0.960	0.960	0.881	0.0
449447847		643	PREDICTED: transmembrane 9 superfamily m	0.957	0.954	0.902	0.0
449480575		643	PREDICTED: LOW QUALITY PROTEIN: transmem	0.957	0.954	0.900	0.0
297847864		637	hypothetical protein ARALYDRAFT_474567 [	0.978	0.984	0.846	0.0

>gi\|255572953\|ref\|XP_002527407.1\| Endosomal P24A protein precursor, putative [Ricinus communis] gi\|223533217\|gb\|EEF34973.1\| Endosomal P24A protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1217 bits (3150), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 584/639 (91%), Positives = 607/639 (94%), Gaps = 1/639 (0%)

Query: 3   KPKKLCTTTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDY 62
           K  K+C++ M I  F +LF SSA+SFYLPGVAPRDF R DPL+VKVNKLSSTKTQLPYDY
Sbjct: 2   KKMKMCSSKM-IFFFAVLFFSSAYSFYLPGVAPRDFHRGDPLSVKVNKLSSTKTQLPYDY 60

Query: 63  YFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNFKE 122
           Y+LKYCKP KI+NSAENLGEVLRGDRIENS Y FEM E+  CKVACRV +DAESAKNFKE
Sbjct: 61  YYLKYCKPNKILNSAENLGEVLRGDRIENSKYTFEMMEEQPCKVACRVTLDAESAKNFKE 120

Query: 123 KIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSF 182
           KIDDEYRVN+ILDNLPVAVLRQRRDGSQS TYEHGFRVGFKGNY GSKEEKYFINNHLSF
Sbjct: 121 KIDDEYRVNMILDNLPVAVLRQRRDGSQSKTYEHGFRVGFKGNYAGSKEEKYFINNHLSF 180

Query: 183 RVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGTAIPQEVD 242
           RVMYHKD ETDSARIVGFEV PNSINHEYKEW + NPQVTTCNKDTK L+QG+ +PQEVD
Sbjct: 181 RVMYHKDLETDSARIVGFEVIPNSINHEYKEWDDNNPQVTTCNKDTKKLIQGSTVPQEVD 240

Query: 243 KDKEIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMR 302
             K IVFTYDVTFKES+IKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMR
Sbjct: 241 SGKAIVFTYDVTFKESEIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMR 300

Query: 303 TLYRDIANYNQLETQEEAQEETGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMI 362
           TLYRDIANYNQLETQ+EAQEETGWKLVHGDVFRAP N+GLLCVYVGTGVQIFGMTLVTMI
Sbjct: 301 TLYRDIANYNQLETQDEAQEETGWKLVHGDVFRAPINSGLLCVYVGTGVQIFGMTLVTMI 360

Query: 363 FALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFPGI 422
           FALLGFLSPSNRGGLMTAMVLLWVFMG+ AGY+SARLYKMFKGTEWKRNTLKTAFMFPGI
Sbjct: 361 FALLGFLSPSNRGGLMTAMVLLWVFMGILAGYSSARLYKMFKGTEWKRNTLKTAFMFPGI 420

Query: 423 LFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKT 482
           LFA+FFVLNALIWGEQSSGAVPFGTMFALV LWFGISVPLVFVGSYLGFKKPAIEDPVKT
Sbjct: 421 LFAIFFVLNALIWGEQSSGAVPFGTMFALVCLWFGISVPLVFVGSYLGFKKPAIEDPVKT 480

Query: 483 NKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVI 542
           NKIPRQIPEQAWYM PVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVI
Sbjct: 481 NKIPRQIPEQAWYMQPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVI 540

Query: 543 LLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKLEITKLVSGI 602
           LLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYS+FYFFTKLEITKLVSGI
Sbjct: 541 LLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSVFYFFTKLEITKLVSGI 600

Query: 603 LYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 641
           LYFGYMVI+SYAFFVLTGTIGFYACFWFVRKIYSSVKID
Sbjct: 601 LYFGYMVIISYAFFVLTGTIGFYACFWFVRKIYSSVKID 639

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|356522474\|ref\|XP_003529871.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|225442268\|ref\|XP_002279431.1\| PREDICTED: transmembrane 9 superfamily member 4 isoform 1 [Vitis vinifera] gi\|147784283\|emb\|CAN70590.1\| hypothetical protein VITISV_026732 [Vitis vinifera] gi\|297743079\|emb\|CBI35946.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356526019\|ref\|XP_003531617.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|224135001\|ref\|XP_002327542.1\| predicted protein [Populus trichocarpa] gi\|222836096\|gb\|EEE74517.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|307136280\|gb\|ADN34107.1\| endosomal protein [Cucumis melo subsp. melo]	Back alignment and taxonomy information

>gi\|15231359\|ref\|NP_187991.1\| protein transmembrane nine 7 [Arabidopsis thaliana] gi\|9294023\|dbj\|BAB01926.1\| multispanning membrane protein-like [Arabidopsis thaliana] gi\|332641889\|gb\|AEE75410.1\| protein transmembrane nine 7 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449447847\|ref\|XP_004141678.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449480575\|ref\|XP_004155934.1\| PREDICTED: LOW QUALITY PROTEIN: transmembrane 9 superfamily member 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297847864\|ref\|XP_002891813.1\| hypothetical protein ARALYDRAFT_474567 [Arabidopsis lyrata subsp. lyrata] gi\|297337655\|gb\|EFH68072.1\| hypothetical protein ARALYDRAFT_474567 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		641
TAIR\|locus:2091561		641	TMN7 "transmembrane nine 7" [A	1.0	1.0	0.798	4.7e-286
TAIR\|locus:2205682		637	TMN6 "transmembrane nine 6" [A	0.978	0.984	0.787	1.4e-277
TAIR\|locus:2183710		648	EMP1 "endomembrane protein 1"	0.975	0.964	0.715	2.7e-249
TAIR\|locus:2047565		637	AT2G24170 [Arabidopsis thalian	0.981	0.987	0.703	2.9e-245
UNIPROTKB\|A5D7E2		642	TM9SF4 "Transmembrane 9 superf	0.953	0.951	0.476	2.5e-161
UNIPROTKB\|Q92544		642	TM9SF4 "Transmembrane 9 superf	0.953	0.951	0.478	2.5e-161
UNIPROTKB\|F1PWE3		642	TM9SF4 "Uncharacterized protei	0.959	0.957	0.476	3.1e-161
UNIPROTKB\|F1NVX7		642	TM9SF4 "Uncharacterized protei	0.959	0.957	0.472	1.4e-160
ZFIN\|ZDB-GENE-040426-1575		651	tm9sf4 "transmembrane 9 superf	0.953	0.938	0.467	1.4e-160
MGI\|MGI:2139220		643	Tm9sf4 "transmembrane 9 superf	0.936	0.933	0.476	1.2e-159

TAIR\|locus:2091561 TMN7 "transmembrane nine 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2748 (972.4 bits), Expect = 4.7e-286, P = 4.7e-286
 Identities = 512/641 (79%), Positives = 558/641 (87%)

Query:     1 MNKPKKLCTTTMKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPY 60
             M K K         L+ + L  S + +FYLPGVAPRDFQ+ DPL VKVNKLSSTKTQLPY
Sbjct:     1 MKKTKGSSFRFYATLLLSFLSFSLSRAFYLPGVAPRDFQKGDPLYVKVNKLSSTKTQLPY 60

Query:    61 DYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESAKNF 120
             DYY+L YCKP KI+N+AENLGEVLRGDRIENSVY F+M ED  CKV CRVK++A+S KNF
Sbjct:    61 DYYYLNYCKPPKILNNAENLGEVLRGDRIENSVYTFQMLEDQPCKVGCRVKLNADSTKNF 120

Query:   121 KEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHL 180
             KEKIDDEYR N+ILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKG+Y+GSKEEKYFI+NHL
Sbjct:   121 KEKIDDEYRANMILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGSYEGSKEEKYFIHNHL 180

Query:   181 SFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGTAIPQE 240
             SFRVMYH+D+E+DSARIVGFEVTPNSI HEYKEW EKNPQ+TTCNKDTKNL+QG  +PQE
Sbjct:   181 SFRVMYHRDQESDSARIVGFEVTPNSILHEYKEWDEKNPQLTTCNKDTKNLIQGNTVPQE 240

Query:   241 VDKDKEIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIM 300
             V++ KEIVFTYDV+FKES+IKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIM
Sbjct:   241 VEQGKEIVFTYDVSFKESEIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIM 300

Query:   301 MRTLYRDIANYNQLXXXXXXXXXXGWKLVHGDVFRAPTNAGLLCVYVGTGVQIFGMTLVT 360
             MRTLY+DI+NYNQL          GWKLVHGDVFR P N+GLLCVYVGTGVQIFGM+LVT
Sbjct:   301 MRTLYKDISNYNQLETQDEAQEETGWKLVHGDVFRPPVNSGLLCVYVGTGVQIFGMSLVT 360

Query:   361 MIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLKTAFMFP 420
             M+FALLGFLSPSNRGGLMTAMVLLWVFMG+FAGY+S+RL+KMFKG +WKR TLKTAFMFP
Sbjct:   361 MMFALLGFLSPSNRGGLMTAMVLLWVFMGIFAGYSSSRLHKMFKGNKWKRMTLKTAFMFP 420

Query:   421 GILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPV 480
             GILFA+FFVLNALIWGEQSSGA+PFGTMFAL  LWFGISVPLVFVGSYLG+KKPAIEDPV
Sbjct:   421 GILFAIFFVLNALIWGEQSSGAIPFGTMFALFCLWFGISVPLVFVGSYLGYKKPAIEDPV 480

Query:   481 KTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXX 540
             KTNKIPRQ+PEQ WYM PVFSILIGGILPFGAVFIELFFILTSIWLNQ            
Sbjct:   481 KTNKIPRQVPEQPWYMKPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVF 540

Query:   541 XXXXXTCAEITIVLCYFQLCSEDYHWWWRSYLTAGXXXXXXXXXXXXXXXTKLEITKLVS 600
                  TCAEIT+VLCYFQLCSEDY+WWWR+YLTAG               TKLEITKLVS
Sbjct:   541 LILIVTCAEITVVLCYFQLCSEDYNWWWRAYLTAGSSAFYLFLYSIFYFFTKLEITKLVS 600

Query:   601 GILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID 641
             G+LYFGYM+I+SYAFFVLTGTIGFYACFWFVRKIYSSVKID
Sbjct:   601 GMLYFGYMIIISYAFFVLTGTIGFYACFWFVRKIYSSVKID 641

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006878 "cellular copper ion homeostasis" evidence=IDA

GO:0006882 "cellular zinc ion homeostasis" evidence=IDA

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2205682 TMN6 "transmembrane nine 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2183710 EMP1 "endomembrane protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2047565 AT2G24170 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7E2 TM9SF4 "Transmembrane 9 superfamily member 4" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92544 TM9SF4 "Transmembrane 9 superfamily member 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWE3 TM9SF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NVX7 TM9SF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1575 tm9sf4 "transmembrane 9 superfamily protein member 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:2139220 Tm9sf4 "transmembrane 9 superfamily protein member 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BH24	TM9S4_MOUSE	No assigned EC number	0.5031	0.9485	0.9455	yes	no
Q5RDY2	TM9S4_PONAB	No assigned EC number	0.5100	0.9547	0.9532	yes	no
Q4KLL4	TM9S4_RAT	No assigned EC number	0.5062	0.9485	0.9455	yes	no
A5D7E2	TM9S4_BOVIN	No assigned EC number	0.5053	0.9547	0.9532	yes	no
Q55FP0	PHG1A_DICDI	No assigned EC number	0.5222	0.9407	0.9407	yes	no
Q92544	TM9S4_HUMAN	No assigned EC number	0.5100	0.9547	0.9532	yes	no
Q9Y819	YON8_SCHPO	No assigned EC number	0.3815	0.9360	0.9538	yes	no
P32802	TMN1_YEAST	No assigned EC number	0.3702	0.9469	0.9100	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		641
pfam02990		518	pfam02990, EMP70, Endomembrane protein 70	0.0
COG1275		329	COG1275, TehA, Tellurite resistance protein and re	0.002
COG0472		319	COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide pho	0.003
pfam00344		340	pfam00344, SecY, SecY translocase	0.004

>gnl\|CDD\|217309 pfam02990, EMP70, Endomembrane protein 70	Back alignment and domain information

 Score =  731 bits (1890), Expect = 0.0
 Identities = 307/546 (56%), Positives = 402/546 (73%), Gaps = 32/546 (5%)

Query: 58  LPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIENSVYEFEMREDLSCKVACRVKVDAESA 117
            PY+YY L +C+P KI + +E+LGEVL GDRI NS Y+ +  E+  C+V C VK+ +E  
Sbjct: 1   EPYEYYSLPFCRPEKIKHKSESLGEVLFGDRIYNSPYKLKFLEEKECEVLCAVKLTSEDV 60

Query: 118 KNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKEEKYFIN 177
           K F++ I++ Y V  ++DNLPVA    + D  +   +E GF +GF+       EEKY++ 
Sbjct: 61  KFFRKAIEEGYYVQWLIDNLPVAGFVGKVDN-KGVGFESGFPLGFQ------TEEKYYLF 113

Query: 178 NHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGTAI 237
           NHL F + YH DR+ D  RIVG EVTP S+              + C+  +         
Sbjct: 114 NHLDFVIEYH-DRDNDDYRIVGIEVTPRSVKP------------SGCSTTSS-------- 152

Query: 238 PQEVDKDKE--IVFTYDVTFKESDIKWASRWDTYLL-MNDDQIHWFSIINSLMIVLFLSG 294
           PQE+D+ KE  + FTY V +KESD+KWASRWD YL  M+D QIHWFSIINSL+IVLFLSG
Sbjct: 153 PQELDEGKENELTFTYSVKWKESDVKWASRWDKYLDAMHDLQIHWFSIINSLVIVLFLSG 212

Query: 295 MVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLVHGDVFRAPTNAGLLCVYVGTGVQIF 354
           +V+MI+MRTL RDIA YN+L+  E+AQEE+GWKLVHGDVFR P N  LL   VG+GVQ+ 
Sbjct: 213 IVSMILMRTLRRDIARYNELDEDEDAQEESGWKLVHGDVFRPPRNPMLLSALVGSGVQLL 272

Query: 355 GMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWKRNTLK 414
            M + T++FA LGFLSPSNRG L+TA ++L+   G  AGY SARLYK FKG +WKRN + 
Sbjct: 273 LMVIGTIVFACLGFLSPSNRGSLLTAAIVLYALTGFVAGYVSARLYKTFKGKKWKRNLIL 332

Query: 415 TAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKP 474
           TAF+FPGI+F +FFVLN ++W   SSGA+PFGT+ AL+ LWF +SVPL F+G  +GF+  
Sbjct: 333 TAFLFPGIVFVIFFVLNFVLWAYGSSGAIPFGTIVALLLLWFLVSVPLTFLGGIVGFRNR 392

Query: 475 AI-EDPVKTNKIPRQIPEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIF 533
           A  + PV+TN+IPRQIPEQ WY++P+  IL+GGILPFGA+FIELFFI TS+WL++ YY+F
Sbjct: 393 AGEQHPVRTNQIPRQIPEQPWYLSPLPGILMGGILPFGAIFIELFFIFTSLWLHKIYYMF 452

Query: 534 GFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSSALYLFLYSIFYFFTKL 593
           GFLF+VF+IL++ C+E+TIVL YFQLC+EDY WWWRS+LT+GS+A+Y+FLYSI+YFFTKL
Sbjct: 453 GFLFLVFIILVVVCSEVTIVLTYFQLCAEDYRWWWRSFLTSGSTAVYVFLYSIYYFFTKL 512

Query: 594 EITKLV 599
           +I+  V
Sbjct: 513 KISGFV 518

Length = 518

>gnl\|CDD\|224194 COG1275, TehA, Tellurite resistance protein and related permeases [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|223548 COG0472, Rfe, UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>gnl\|CDD\|215869 pfam00344, SecY, SecY translocase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		641
KOG1278		628	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
KOG1277		593	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
PF02990		521	EMP70: Endomembrane protein 70; InterPro: IPR00424	100.0
PF12670		116	DUF3792: Protein of unknown function (DUF3792); In	87.29
PF11368		248	DUF3169: Protein of unknown function (DUF3169); In	81.48

>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1e-206  Score=1633.41  Aligned_cols=616  Identities=67%  Similarity=1.201  Sum_probs=586.1

Q ss_pred             hhHHHHHHHHhcccceeecCCCCCCCCCCCCceEEEEeccccCCCCccccccccCCcCCCcccCCCCCccceecCCceee
Q 040848           12 MKILVFTLLFISSAHSFYLPGVAPRDFQRHDPLNVKVNKLSSTKTQLPYDYYFLKYCKPAKIVNSAENLGEVLRGDRIEN   91 (641)
Q Consensus        12 m~~~~~~~~~~~~~~af~~pg~~p~~Y~~Gd~V~l~vNkl~s~~~~~~Y~Yy~lpfC~p~~~~~~~~slGeiL~Gdr~~~   91 (641)
                      ...++++.+++..+.|||+||++|..|++||+++++|||++|.++|.||+||++|||+|+++++++|||||+|+|||++|
T Consensus        11 ~~~~ll~~~~~~~~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~~i~~~~EnLGeVl~GDRi~n   90 (628)
T KOG1278|consen   11 LLALLLVSLLLSTSSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPEKIKKQSENLGEVLRGDRIEN   90 (628)
T ss_pred             HHHHHHHHHHHhcccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCccccCCcccchhceeccCcccC
Confidence            33444444455679999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeccccccccceeeecCHHHHHHHHHHHhhcceEEEEEeceeEEEEeccccCCCcceeccCceeeeecccCCCCC
Q 040848           92 SVYEFEMREDLSCKVACRVKVDAESAKNFKEKIDDEYRVNLILDNLPVAVLRQRRDGSQSTTYEHGFRVGFKGNYQGSKE  171 (641)
Q Consensus        92 S~y~i~f~~~~~c~~lC~~~~~~~~~~~~~~~I~~~Y~~~~~iD~LPv~~~~~~~~~~~~~~y~~GfplG~~~~~~~~~~  171 (641)
                      |||+++|++|++|+.+|++++++++++.++|+|+++|++||++||||++.+....+ +++.+|.+|||+|+.+.   .+.
T Consensus        91 SPy~~~m~e~~~C~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~~-~~~~~y~~GfplG~~~~---~~~  166 (628)
T KOG1278|consen   91 SPYKFKMLENQPCETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERSD-DGKVYYGTGFPLGFKGP---KDE  166 (628)
T ss_pred             CCceEecccCCcchhhhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeecC-CCceEeccCccceeccC---CCc
Confidence            99999999999999999999999999999999999999999999999988665443 47788999999999842   256


Q ss_pred             CcEEEeeeEEEEEEEecCCCCCCcEEEEEEEEeccccccccccccCCCCcccCCCCCcccccCCCCCcccCC--CceEEE
Q 040848          172 EKYFINNHLSFRVMYHKDRETDSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNLVQGTAIPQEVDK--DKEIVF  249 (641)
Q Consensus       172 ~~~yL~NH~~f~I~Yn~~~~~~~~~IVgf~V~p~Si~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~--~~~i~f  249 (641)
                      +++|++||++|+|+||+.++ ++||||||||+|+|++|+.++.+++. ..++|+.+.+        ++++++  ++++.|
T Consensus       167 ~~~y~~NHl~~~i~yH~~~~-~~~riVgfeV~P~Si~~~~~~~~~~~-~~~~c~~~~~--------~~~~~e~~~~~i~f  236 (628)
T KOG1278|consen  167 DKYYLHNHLDFVIRYHRDDN-DKYRIVGFEVKPVSIKHEHEKGDSKN-SLPTCSIPEK--------PLELDEGEETEIVF  236 (628)
T ss_pred             cceeEeeeEEEEEEEEecCC-CceEEEEEEEEeeeeecccCCCcccc-cCCcccCCCC--------ccccCCCCceEEEE
Confidence            78999999999999998876 67999999999999999876655555 5677887643        334444  456999


Q ss_pred             EEEEEEeecCCCccchhhccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccchhhhhhhhhcCccEE
Q 040848          250 TYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLYRDIANYNQLETQEEAQEETGWKLV  329 (641)
Q Consensus       250 TYSV~w~~s~~~w~~Rwd~Yl~~~~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~l~~Di~~Yn~~~~~~~~~ee~GWKlv  329 (641)
                      ||||+|+|||++|++|||.|+++++.|||||||+||++||+||+++|++|++||||||++|||++|.|||+|||+|||+|
T Consensus       237 TYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~~Ee~GWKLV  316 (628)
T KOG1278|consen  237 TYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDAQEESGWKLV  316 (628)
T ss_pred             EEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhhhhhcceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccccCCCCCccceeeeeccchHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHhhhhhHHHHHHHHhccCcchh
Q 040848          330 HGDVFRAPTNAGLLCVYVGTGVQIFGMTLVTMIFALLGFLSPSNRGGLMTAMVLLWVFMGLFAGYASARLYKMFKGTEWK  409 (641)
Q Consensus       330 hgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~~y~~~~~isGy~S~~~yk~~~g~~Wk  409 (641)
                      ||||||||+++|+||++||+|+|+++|++++++||++|++||++||+++|+++++|+++|++|||+|+|+||+++|+.||
T Consensus       317 hGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk  396 (628)
T KOG1278|consen  317 HGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWK  396 (628)
T ss_pred             ecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhchhhHHHHHHHHHHHHHHHhhcCCCccChHHHHHHHHHHHHhhhhhhhhhhhhccCCCCCCCCcccCCCCCCC
Q 040848          410 RNTLKTAFMFPGILFAVFFVLNALIWGEQSSGAVPFGTMFALVFLWFGISVPLVFVGSYLGFKKPAIEDPVKTNKIPRQI  489 (641)
Q Consensus       410 ~~~~~t~~l~P~~~~~i~~~lN~i~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~iG~~~g~k~~~~~~P~~~n~ipR~I  489 (641)
                      +++++|++++||+++++++++|+++|+++||+|+||+|++++++||++||+||+++|+++|+|++++|+|+|||||||||
T Consensus       397 ~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqI  476 (628)
T KOG1278|consen  397 RNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQI  476 (628)
T ss_pred             hhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccccceeeeeccccceeeehhhHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCceeeh
Q 040848          490 PEQAWYMTPVFSILIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFIVFVILLITCAEITIVLCYFQLCSEDYHWWWR  569 (641)
Q Consensus       490 P~~~~y~~~~~~~l~~GilPF~~i~iEl~~i~~slW~~~~yy~fgfL~~~~~ilii~~a~vsI~~tY~~L~~Edy~WwWr  569 (641)
                      |.||||+++++.+++||++|||+|||||+||++|+|.||+||+||||+++++||+++|||+||++||+|||+||||||||
T Consensus       477 P~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWR  556 (628)
T KOG1278|consen  477 PEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWR  556 (628)
T ss_pred             CCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccchhHHHHHHHHhhheeeeecccccchhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccCC
Q 040848          570 SYLTAGSSALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTIGFYACFWFVRKIYSSVKID  641 (641)
Q Consensus       570 SF~~~gs~~~y~flYsi~y~~~~~~~~g~~~~~lyf~ys~l~s~~~~l~~G~iGflas~~Fv~~IY~~iK~D  641 (641)
                      ||++||++|+|+|+||++|+++|++++|++++++|||||++++++++|+||||||+||+|||||||+++|+|
T Consensus       557 sF~~sG~~avY~fiYsi~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKiD  628 (628)
T KOG1278|consen  557 SFLTSGSSAVYVFIYSIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKID  628 (628)
T ss_pred             eeeccCcchhhHHHHHHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998

>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter	Back alignment and domain information

>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes	Back alignment and domain information

>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		641
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 101/645 (15%), Positives = 173/645 (26%), Gaps = 202/645 (31%)

Query: 92  SVYEFEMREDLSCKVACRVKVDAE-SAKNF--KEKIDDEYRVNLILDNLPVAVLRQRR-- 146
           SV+E    ++  CK       D +   K+   KE+ID       I+     AV    R  
Sbjct: 23  SVFEDAFVDNFDCK-------DVQDMPKSILSKEEIDH------II-MSKDAVSGTLRLF 68

Query: 147 ---DGSQSTTYEHGFRVGFKGNYQGSKEEKYFINNHLSFR--------VMYHKDRE---T 192
                 Q    +       + NY+       F+ + +            MY + R+    
Sbjct: 69  WTLLSKQEEMVQKFVEEVLRINYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121

Query: 193 DSARIVGFEVTPNSINHEYKEWSEKNPQVTTCNKDTKNL-VQG------TAIPQEVDKDK 245
           D+     + V+      + ++   +        +  KN+ + G      T +  +V    
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLE-------LRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 246 EIVFTYDVTFKESDIKWASRWDTYLLMNDDQIHWFSIINSLMIVLFLSGMVAMIMMRTLY 305
           ++                          D +I W ++ N        S    + M++ L 
Sbjct: 175 KV----------------------QCKMDFKIFWLNLKNC------NSPETVLEMLQKLL 206

Query: 306 RDIA-NYNQLETQ--------EEAQEETGWKLVHGDVFRAPTNAGLLC---VYVGTGVQI 353
             I  N+                 Q E    L             LL    V        
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-----LLVLLNVQNAKAWNA 261

Query: 354 FGM---TLVTMIFA-LLGFLSPSNRGGLMTAMVLLWVF-----MGLFAGYAS-------- 396
           F +    L+T  F  +  FLS +    + +               L   Y          
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 397 -------------ARLYKMFKGT--EWKR---NTLKTAF-MF-----PGIL------FAV 426
                        A   +    T   WK    + L T          P          +V
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 427 F--------FVLNALIWGEQSSGAVPFGTM-----FALVFLW---FGISVPLVFVGSYLG 470
           F         +L +LIW +    +     +     ++LV        IS+P +    YL 
Sbjct: 381 FPPSAHIPTILL-SLIWFDVIK-SDVMVVVNKLHKYSLVEKQPKESTISIPSI----YLE 434

Query: 471 FKKPAIEDPVKTNKI--PRQIPE--QAWYMTP------VFSILIGGILPFGAVFIELFFI 520
            K     +      I     IP+   +  + P       +S  IG  L       E   +
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHL-KNIEHPERMTL 492

Query: 521 LTSIWLNQFYYIFGFL---FIVFVILLITCAEITIVLCYFQLCSEDYHWWWRSYLTAGSS 577
              ++L+     F FL                I   L   QL  + Y    + Y+     
Sbjct: 493 FRMVFLD-----FRFLEQKIRHDSTAWNASGSILNTL--QQL--KFY----KPYICDNDP 539

Query: 578 ALYLFLYSIFYFFTKLEITKLVSGILYFGYMVIVSYAFFVLTGTI 622
                + +I  F  K+E   L+       Y  ++  A       I
Sbjct: 540 KYERLVNAILDFLPKIE-ENLICS----KYTDLLRIALMAEDEAI 579

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00