Citrus Sinensis ID: 040915

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100----
Protein Sequence
MALGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRRRTRTTSFGCLCWSGFHPTRRWEIIVEENGDN
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHcHHccccccccccccccccccccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEccccc
Coil and Loop (DISEMBL)
malgtrgslYEVLRVEPTTMISEIKMAYQSLAKVYHLdlsgngrdfIEIHKTyemlsdptarVVYDMSLvsrrrtrttsfgclcwsgfhptrrWEIIVEENGDN
Flexible Loop (DISEMBL)
malgtrgslyevlRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTyemlsdptarvVYDMSLVSrrrtrttsfgclcwsgfhptrrweiiveengdn
Low Complexity Region (SEG)
MALGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSrrrtrttSFGCLCWSGFHPTRRWEIIVEENGDN
Disordered region (IsUnstruct)
*******SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRRRTRTTSFGCLCWSGFHPTRRWEIIV******
Disordered Region (DISOPRED)
*****RG*LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSL********************PTRRWEIIV*EN***
Disordered Region (DISEMBL)
MALGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRRRTRTTSFGCLCWSGFHPTRRWEIIVEENGDN
Disordered Region (DISPRO)
******GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRR**************FHPTRRWEIIVEE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRRRTRTTSFGCLCWSGFHPTRRWEIIVEENGDN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	104	2.2.26 [Sep-21-2011]
Q9FYB5	161	Chaperone protein dnaJ 11	no	no	0.826	0.534	0.375	3e-08
Q9SDN0	197	Chaperone protein dnaJ 20	no	no	0.836	0.441	0.359	3e-08
P47248	310	DnaJ-like protein MG002 O	yes	no	0.596	0.2	0.444	9e-08
Q8RB67	384	Chaperone protein DnaJ OS	yes	no	0.586	0.158	0.446	1e-07
Q50312	309	DnaJ-like protein MG002 h	yes	no	0.596	0.200	0.428	2e-07
Q09912	379	Protein psi1 OS=Schizosac	yes	no	0.557	0.153	0.474	4e-07
Q71ZJ8	376	Chaperone protein DnaJ OS	yes	no	0.548	0.151	0.466	6e-07
C1KVB9	376	Chaperone protein DnaJ OS	yes	no	0.548	0.151	0.466	6e-07
Q8DKR7	373	Chaperone protein DnaJ OS	yes	no	0.557	0.155	0.442	8e-07
O74752	407	Mitochondrial protein imp	no	no	0.557	0.142	0.474	8e-07

>sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 49/96 (51%), Gaps = 10/96 (10%)

Query: 7   GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGR-------DFIEIHKTYEMLSDP 59
            SLY+VL V       +IK AY+ LA++ H D++G  R       +F++IH  Y  LSDP
Sbjct: 64  ASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDP 123

Query: 60  TARVVYDMSLVSRRRTRTTSFGCLCWSGFHPTRRWE 95
             R VYD  ++ R R  T     L   G +  R WE
Sbjct: 124 EKRSVYDRRMLRRSRPLTVGTSGL---GSYVGRNWE 156

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SDN0|DNJ20_ARATH Chaperone protein dnaJ 20, chloroplastic OS=Arabidopsis thaliana GN=ATJ20 PE=2 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 16/103 (15%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGR------DFIEIHKTYEMLSDPTA 61
           S Y++L V  +  + EIK AY+ LA+ YH D+S   R       FI + + YE LSDP  
Sbjct: 66  SFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRR 125

Query: 62  RVVYDMSLVSRRRTRTTSFG-CLCWSGFHPTRRWEIIVEENGD 103
           RV+YD  L         S G    +SG    R  + +VEE  +
Sbjct: 126 RVLYDRDL---------SMGFSFSFSGRRQNRYDQEVVEEKSE 159

Have a continuous role in plant development probably in the structural organization of compartments.

Arabidopsis thaliana (taxid: 3702)

>sp|P47248|DNAJL_MYCGE DnaJ-like protein MG002 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG002 PE=4 SV=1

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 41/63 (65%), Gaps = 1/63 (1%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG-RDFIEIHKTYEMLSDPTARVVYD 66
          +LY++L +  T  I EIK+AY+ LAK YH D++  G + F+EI+  Y +LSDP  +  YD
Sbjct: 2  NLYDLLELPTTASIKEIKIAYKRLAKRYHPDVNKLGSQTFVEINNAYSILSDPNQKEKYD 61

Query: 67 MSL 69
            L
Sbjct: 62 SML 64

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 4/65 (6%)

Query: 6  RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTA 61
          +  LYE+L V+      EIK AY+ LAK YH DL+   ++    F EI++ YE+LSDP  
Sbjct: 3  KKDLYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQK 62

Query: 62 RVVYD 66
          R  YD
Sbjct: 63 RAQYD 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|Q50312|DNAJL_MYCPN DnaJ-like protein MG002 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_002 PE=4 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-FIEIHKTYEMLSDPTARVVYD 66
          +LY++L +  T  + EIK AY+ LAK YH D++  G D F++I+  Y +LSD T +  YD
Sbjct: 2  TLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYD 61

Query: 67 MSL 69
            L
Sbjct: 62 AML 64

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

>sp|Q09912|PSI1_SCHPO Protein psi1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=psi1 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG-RDFIEIHKTYEMLSDPTARVVYD 66
          LY+ L V P    +E+K AY+ LA  YH D + NG + F EI   YE+LSDP  R +YD
Sbjct: 7  LYDCLEVRPEASEAELKKAYRKLALKYHPDKNPNGEKKFKEISLAYEVLSDPQRRKLYD 65

Required for nuclear migration during mitosis. It is required for the normal initiation of translation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDL---SGNGRDFIEIHKTYEMLSDPTARVVYD 66
          YEVL V  +    EIK AY+ L+K YH D+   +G    F EI + YE LSDP  R  YD
Sbjct: 7  YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=dnaJ PE=3 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDL---SGNGRDFIEIHKTYEMLSDPTARVVYD 66
          YEVL V  +    EIK AY+ L+K YH D+   +G    F EI + YE LSDP  R  YD
Sbjct: 7  YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

>sp|Q8DKR7|DNAJ_THEEB Chaperone protein DnaJ OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaJ PE=3 SV=2

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 3/61 (4%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVY 65
           YE+L V  +    E+K AY+ LA+ YH D++   G    F EI++ YE+LSDP AR  Y
Sbjct: 5  FYEILGVSRSADAEELKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSDPQARANY 64

Query: 66 D 66
          D
Sbjct: 65 D 65

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermosynechococcus elongatus (strain BP-1) (taxid: 197221)

>sp|O74752|MAS5_SCHPO Mitochondrial protein import protein mas5 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mas5 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-FIEIHKTYEMLSDPTARVVYD 66
          LYEVL V+ T   +E+K AY+ LA  YH D + N  D F EI + YE+L+D   R  YD
Sbjct: 7  LYEVLNVDVTASQAELKKAYRKLALKYHPDKNPNAGDKFKEISRAYEILADEEKRATYD 65

Probably involved in mitochondrial protein import.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
255579560	168	chaperone protein DNAj, putative [Ricinu	0.807	0.5	0.520	5e-18
15231204	157	chaperone DnaJ-domain containing protein	0.817	0.541	0.543	2e-16
225462060	148	PREDICTED: chaperone protein dnaJ 11, ch	0.836	0.587	0.531	2e-16
224061637	99	predicted protein [Populus trichocarpa]	0.807	0.848	0.520	3e-16
297834156	157	DNAJ heat shock N-terminal domain-contai	0.826	0.547	0.527	6e-16
118487648	171	unknown [Populus trichocarpa]	0.807	0.491	0.480	1e-14
224122088	171	predicted protein [Populus trichocarpa]	0.807	0.491	0.480	1e-14
356552398	142	PREDICTED: chaperone protein dnaJ 11, ch	0.846	0.619	0.49	1e-14
224093380	142	predicted protein [Populus trichocarpa]	0.807	0.591	0.489	2e-14
357460317	161	Chaperone protein dnaJ [Medicago truncat	0.846	0.546	0.489	5e-14

>gi|255579560|ref|XP_002530622.1| chaperone protein DNAj, putative [Ricinus communis] gi|223529832|gb|EEF31765.1| chaperone protein DNAj, putative [Ricinus communis]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 63/96 (65%), Gaps = 12/96 (12%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLD------LSGNGRDFIEIHKTYEMLSDPTA 61
           SLYE+LR++ T  + EIK AY+SLAK+YH D      +  +GRDF+EIH  YE LSDP A
Sbjct: 72  SLYEILRIKRTASLMEIKTAYRSLAKLYHPDAAVREDVETDGRDFMEIHNAYETLSDPAA 131

Query: 62  RVVYDMSL--VSRRRTRTTSFGCLCWSGFHPTRRWE 95
           R +YD+SL   SRRR     F      G++PTRRWE
Sbjct: 132 RALYDLSLDAASRRRRPAVGFT----GGYYPTRRWE 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231204|ref|NP_187939.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|9294537|dbj|BAB02800.1| DnaJ-like protein [Arabidopsis thaliana] gi|21592683|gb|AAM64632.1| DnaJ protein, putative [Arabidopsis thaliana] gi|32815917|gb|AAP88343.1| At3g13310 [Arabidopsis thaliana] gi|332641811|gb|AEE75332.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/92 (54%), Positives = 62/92 (67%), Gaps = 7/92 (7%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNGRDFIEIHKTYEMLSDPTARVVYD 66
           SLYE+L+V  T  ++EIK AY+SLAKVYH D S  +GRDF+EIHK Y  L+DPT R +YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 67  MSL-VSRRRTRTTSFGCLCWSG--FHPTRRWE 95
            +L V RRR      G +  SG  +  TRRWE
Sbjct: 124 STLRVPRRRVHA---GAMGRSGRVYATTRRWE 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462060|ref|XP_002275924.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera] gi|296090000|emb|CBI39819.3| unnamed protein product [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 62/96 (64%), Gaps = 9/96 (9%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVV 64
           SLYEVLRV+ T   +EIK AY+SLAK+YH D S    +GR+FI+IH  YE LSDP AR V
Sbjct: 49  SLYEVLRVKQTASPTEIKTAYRSLAKMYHPDASPVDSDGRNFIQIHNAYETLSDPAARAV 108

Query: 65  YDMSLVSRRRTRTTSFGCLCW-----SGFHPTRRWE 95
           YD+SL S  R R  ++ C        S  + TRRWE
Sbjct: 109 YDLSLGSTGR-RPYAYACSSGGVRGRSAHYSTRRWE 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061637|ref|XP_002300579.1| predicted protein [Populus trichocarpa] gi|222847837|gb|EEE85384.1| predicted protein [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/98 (52%), Positives = 57/98 (58%), Gaps = 14/98 (14%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDL-------SGNGRDFIEIHKTYEMLSDPT 60
          SLYE+LRV PT    EIK AY+SLAKVYH D           G DFIEIH  YE LSDP 
Sbjct: 1  SLYEILRVNPTASQVEIKTAYRSLAKVYHPDAMLDRDDEPSEGVDFIEIHNAYETLSDPA 60

Query: 61 ARVVYDMSLVSRRRT---RTTSFGCLCWSGFHPTRRWE 95
          AR VYDMSL +  R    R   +      G++ TRRWE
Sbjct: 61 ARAVYDMSLSAAARDFYRRAVGYS----GGYYTTRRWE 94

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834156|ref|XP_002884960.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330800|gb|EFH61219.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 61/91 (67%), Gaps = 5/91 (5%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNGRDFIEIHKTYEMLSDPTARVVYD 66
           SLYE+L+V  T  ++EIK AY+SLAKVYH D S  +GRDF+EIHK Y  L+DPT R +YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 67  MSLVSRRRTRTTSFGCLCWSG--FHPTRRWE 95
            +L + R  R    G +  SG  +  TRRWE
Sbjct: 124 STLRAPR--RRVHAGAMGRSGRVYTTTRRWE 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487648|gb|ABK95649.1| unknown [Populus trichocarpa]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 57/102 (55%), Gaps = 18/102 (17%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDL-----------SGNGRDFIEIHKTYEML 56
           SLY+VLRV P     EIK AY+SLAK+YH D              +G DFIEIH  YE L
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 57  SDPTARVVYDMSLVSRRRT---RTTSFGCLCWSGFHPTRRWE 95
           SDPTAR VYD+SL +  R    R   +      G + TRRWE
Sbjct: 129 SDPTARAVYDLSLSAAARCFYRRAAGYS----GGDYTTRRWE 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122088|ref|XP_002330538.1| predicted protein [Populus trichocarpa] gi|222872096|gb|EEF09227.1| predicted protein [Populus trichocarpa]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 57/102 (55%), Gaps = 18/102 (17%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDL-----------SGNGRDFIEIHKTYEML 56
           SLY+VLRV P     EIK AY+SLAK+YH D              +G DFIEIH  YE L
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 57  SDPTARVVYDMSLVSRRRT---RTTSFGCLCWSGFHPTRRWE 95
           SDPTAR VYD+SL +  R    R   +      G + TRRWE
Sbjct: 129 SDPTARAVYDLSLSAAARCFYRRAAGYS----GGDYTTRRWE 166

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552398|ref|XP_003544555.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 62/100 (62%), Gaps = 12/100 (12%)

Query: 7   GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-----GNGRDFIEIHKTYEMLSDPTA 61
            SLYEVLR++      EIK AY++LAKVYH D +      + RDFIEIH  YE LSDP+A
Sbjct: 39  ASLYEVLRIKQNASAVEIKSAYRNLAKVYHPDSALRRSESDERDFIEIHDAYETLSDPSA 98

Query: 62  RVVYDMSLVSRRRTRTTSFGCLCW-----SGF-HPTRRWE 95
           R +YD+SL++  R    SF  L       SGF + TR+WE
Sbjct: 99  RALYDLSLMA-ARDDNRSFSSLVAAPNGSSGFYYQTRKWE 137

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093380|ref|XP_002309904.1| predicted protein [Populus trichocarpa] gi|222852807|gb|EEE90354.1| predicted protein [Populus trichocarpa]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 60/96 (62%), Gaps = 12/96 (12%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG-------NGRDFIEIHKTYEMLSDPT 60
           SLYE+L+V+ T  ++EIK A++SLAKVYH D+SG       +G DF+EI   YE LSDP 
Sbjct: 46  SLYEILQVKRTASLTEIKGAFRSLAKVYHPDVSGSDGGEQLDGLDFVEICNAYETLSDPA 105

Query: 61  ARVVYDMSL-VSRRRTRTTSFGCLCWSGFHPTRRWE 95
           AR +YD+SL  S  R R   F      G+   RRWE
Sbjct: 106 ARAMYDLSLGYSSSRKRPVRFS----GGYSLNRRWE 137

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460317|ref|XP_003600440.1| Chaperone protein dnaJ [Medicago truncatula] gi|358349362|ref|XP_003638707.1| Chaperone protein dnaJ [Medicago truncatula] gi|355489488|gb|AES70691.1| Chaperone protein dnaJ [Medicago truncatula] gi|355504642|gb|AES85845.1| Chaperone protein dnaJ [Medicago truncatula] gi|388517361|gb|AFK46742.1| unknown [Medicago truncatula]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 59/98 (60%), Gaps = 10/98 (10%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG------NGRDFIEIHKTYEMLSDPTA 61
           SLYEVLR+ P     EIK AY+SLAKVYH D +       N  DFIEI   YE LSDP++
Sbjct: 59  SLYEVLRLNPGASAMEIKSAYRSLAKVYHPDAAARRLQECNDGDFIEIRNAYETLSDPSS 118

Query: 62  RVVYDMSLVSR--RRTRTTSFGCLCW--SGFHPTRRWE 95
           R +YD+SL+    R  R T+   +    SGF+  RRWE
Sbjct: 119 RQIYDLSLMVHGGRNRRFTAAPVMQKRNSGFYTNRRWE 156

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	104
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.826	0.547	0.505	1.4e-16
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.788	0.512	0.361	9.7e-09
TAIR|locus:2119465	197	J20 "AT4G13830" [Arabidopsis t	0.846	0.446	0.372	2.6e-08
DICTYBASE|DDB_G0272983	572	DDB_G0272983 "DNAJ heat shock	0.605	0.110	0.468	7e-08
ZFIN|ZDB-GENE-081021-2	199	dnajc5ab "DnaJ (Hsp40) homolog	0.625	0.326	0.442	1.5e-07
POMBASE|SPCC830.07c	379	psi1 "DNAJ domain protein, inv	0.557	0.153	0.474	1.6e-07
FB|FBgn0032474	389	DnaJ-H "DnaJ homolog" [Drosoph	0.567	0.151	0.483	1.7e-07
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.817	0.527	0.347	1.8e-07
UNIPROTKB|C9JDE6	211	DNAJA4 "DnaJ homolog subfamily	0.548	0.270	0.465	2.7e-07
UNIPROTKB|Q5ZJV3	397	DNAJA1 "Uncharacterized protei	0.548	0.143	0.465	2.9e-07

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 46/91 (50%), Positives = 58/91 (63%)

Query:     8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNGRDFIEIHKTYEMLSDPTARVVYD 66
             SLYE+L+V  T  ++EIK AY+SLAKVYH D S  +GRDF+EIHK Y  L+DPT R +YD
Sbjct:    64 SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query:    67 MSLVSXXXXXXXSFGCLCWSG--FHPTRRWE 95
              +L           G +  SG  +  TRRWE
Sbjct:   124 STL--RVPRRRVHAGAMGRSGRVYATTRRWE 152

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 34/94 (36%), Positives = 47/94 (50%)

Query:     8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD------FIEIHKTYEMLSDPTA 61
             SLYE+L +   +   EIK AY+ LA++ H D++ N RD      F++IH  Y  LSDP  
Sbjct:    68 SLYEILEIPVGSTSQEIKSAYRRLARICHPDVARNSRDNSSADDFMKIHAAYCTLSDPEK 127

Query:    62 RVVYDMSLVSXXXXXXXSFGCLCWSGFHPTRRWE 95
             R VYD   +         +G   + G    R WE
Sbjct:   128 RAVYDRRTLLRSRPLTAGYGS--YGG----RNWE 155

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2119465 J20 "AT4G13830" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 38/102 (37%), Positives = 52/102 (50%)

Query:     8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGR-----D-FIEIHKTYEMLSDPTA 61
             S Y++L V  +  + EIK AY+ LA+ YH D+S   R     D FI + + YE LSDP  
Sbjct:    66 SFYDLLGVTESVTLPEIKQAYKQLARKYHPDVSPPDRVEEYTDRFIRVQEAYETLSDPRR 125

Query:    62 RVVYDMSLVSXXXXXXXSFGCLCWSGFHPTRRWEIIVEENGD 103
             RV+YD  L         SF    +SG    R  + +VEE  +
Sbjct:   126 RVLYDRDL-----SMGFSFS---FSGRRQNRYDQEVVEEKSE 159

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

DICTYBASE|DDB_G0272983 DDB_G0272983 "DNAJ heat shock N-terminal domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 133 (51.9 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 30/64 (46%), Positives = 41/64 (64%)

Query:     4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-FIEIHKTYEMLSDPTAR 62
             G   S YE+L +E T   SEIK AY+ LA  YH D + +G D F EI+K Y++LS+P  +
Sbjct:    39 GELKSPYEILGIEKTDNASEIKQAYKVLALKYHPDKNPHGVDKFQEINKAYQILSNPDTK 98

Query:    63 VVYD 66
             + YD
Sbjct:    99 LFYD 102

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-081021-2 dnajc5ab "DnaJ (Hsp40) homolog, subfamily C, member 5ab" [Danio rerio (taxid:7955)]

 Score = 120 (47.3 bits), Expect = 1.5e-07, P = 1.5e-07
 Identities = 31/70 (44%), Positives = 41/70 (58%)

Query:     2 ALGTRG-SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEML 56
             AL T G SLY VL VE  T   +IK +Y+ LA  +H D + N  +    F EI+  + +L
Sbjct:     9 ALSTSGESLYVVLGVEKNTAQEDIKKSYRKLALKFHPDKNPNNPEAADKFKEINNAHAIL 68

Query:    57 SDPTARVVYD 66
             SDPT R +YD
Sbjct:    69 SDPTKRNIYD 78

GO:0005575 "cellular_component" evidence=ND

POMBASE|SPCC830.07c psi1 "DNAJ domain protein, involved in translation initiation Psi1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 127 (49.8 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 28/59 (47%), Positives = 36/59 (61%)

Query:     9 LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG-RDFIEIHKTYEMLSDPTARVVYD 66
             LY+ L V P    +E+K AY+ LA  YH D + NG + F EI   YE+LSDP  R +YD
Sbjct:     7 LYDCLEVRPEASEAELKKAYRKLALKYHPDKNPNGEKKFKEISLAYEVLSDPQRRKLYD 65

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006413 "translational initiation" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=ISM

GO:0034605 "cellular response to heat" evidence=IEP

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

FB|FBgn0032474 DnaJ-H "DnaJ homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 127 (49.8 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 29/60 (48%), Positives = 37/60 (61%)

Query:     8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-FIEIHKTYEMLSDPTARVVYD 66
             +LY+VLRV P     EIK  Y+ LAK +H D + +  D F EI   YE+LSDP  R +YD
Sbjct:     5 NLYDVLRVAPDATDEEIKKNYRKLAKEFHPDKNPDAGDKFKEISFAYEVLSDPEKRRIYD 64

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 33/95 (34%), Positives = 46/95 (48%)

Query:     8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGR-------DFIEIHKTYEMLSDPT 60
             SLY+VL V       +IK AY+ LA++ H D++G  R       +F++IH  Y  LSDP 
Sbjct:    65 SLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDPE 124

Query:    61 ARVVYDMSLVSXXXXXXXSFGCLCWSGFHPTRRWE 95
              R VYD  ++            L   G +  R WE
Sbjct:   125 KRSVYDRRMLRRSRPLTVGTSGL---GSYVGRNWE 156

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

UNIPROTKB|C9JDE6 DNAJA4 "DnaJ homolog subfamily A member 4" [Homo sapiens (taxid:9606)]

 Score = 119 (46.9 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 27/58 (46%), Positives = 36/58 (62%)

Query:    10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLSDPTARVVYD 66
             Y++L V+P+    EIK AY+ LA  YH D + + G  F  I + YE+LSDP  R VYD
Sbjct:     8 YDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKRDVYD 65

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q5ZJV3 DNAJA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 125 (49.1 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 27/58 (46%), Positives = 35/58 (60%)

Query:    10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLSDPTARVVYD 66
             Y+VL V P     E+K AY+ LA  YH D + N G  F +I + YE+LSDP  R +YD
Sbjct:     8 YDVLGVSPNASAEELKKAYRKLALKYHPDKNHNEGEKFKQISQAYEVLSDPKKRDLYD 65

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0030317 "sperm motility" evidence=ISS

GO:0030521 "androgen receptor signaling pathway" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	104
pfam00226	63	pfam00226, DnaJ, DnaJ domain	3e-13
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	4e-12
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	9e-12
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	7e-11
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	9e-11
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	2e-10
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	8e-10
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	2e-09
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	4e-09
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	4e-09
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	1e-08
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	2e-08
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	2e-08
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-08
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	2e-08
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	2e-08
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	7e-08
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	8e-08
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	9e-08
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	1e-07
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	1e-07
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-07
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	2e-07
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	2e-07
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	3e-07
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	4e-07
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	7e-07
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	9e-07
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	1e-06
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	2e-06
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	3e-06
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	3e-06
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	4e-05
PRK14288	369	PRK14288, PRK14288, chaperone protein DnaJ; Provis	4e-05
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	6e-05
PRK14279	392	PRK14279, PRK14279, chaperone protein DnaJ; Provis	0.003

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 58.7 bits (143), Expect = 3e-13
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG----RDFIEIHKTYEMLSDPTARVV 64
           YE+L V       EIK AY+ LA  YH D +         F EI++ YE+LSDP  R +
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

Query: 65 YD 66
          YD
Sbjct: 62 YD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 60.6 bits (147), Expect = 4e-12
 Identities = 28/58 (48%), Positives = 35/58 (60%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66
          LYEVL +      SEIK AY+ LA  +H D  G+   F EI + YE+LSDP  R +YD
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYD 87

Length = 421

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 59.2 bits (144), Expect = 9e-12
 Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS----GNGRDFIEIHKTYEMLSDPTARV 63
            YE+L V       EIK AY+ LAK YH D +         F EI++ YE+LSDP  R 
Sbjct: 5  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 64 VYDM 67
           YD 
Sbjct: 65 AYDQ 68

Length = 371

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 56.7 bits (137), Expect = 7e-11
 Identities = 29/62 (46%), Positives = 38/62 (61%), Gaps = 4/62 (6%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNG---RDFIEIHKTYEMLSDPTARVV 64
           YE+L V+      EIK AY+ LAK YH DL+ G+    + F EI++ YE+LSDP  R  
Sbjct: 7  YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66

Query: 65 YD 66
          YD
Sbjct: 67 YD 68

Length = 386

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 52.2 bits (126), Expect = 9e-11
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG-----RDFIEIHKTYEMLSDPT 60
            YE+L V     + EIK AY+ LA  YH D +          F EI++ YE+LSDP 
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 3/61 (4%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG---RDFIEIHKTYEMLSDPTARVVYD 66
          YE+L V       EIK AY+ LA+ YH D + N      F EI++ Y++LSDP  R +YD
Sbjct: 6  YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65

Query: 67 M 67
           
Sbjct: 66 Q 66

Length = 382

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 53.6 bits (129), Expect = 8e-10
 Identities = 27/60 (45%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
          YEVL V  +    EIK AY+ L+K YH D++   G    F EI + YE+LSD   R  YD
Sbjct: 7  YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYD 66

Length = 376

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
          YE+L V       EIK AY+ LAK YH D +        F EI++ YE+LSDP  R  YD
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62

Query: 67 M 67
           
Sbjct: 63 Q 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVY 65
           Y+ L V       EIK AY+ L+K YH D++   G    + E+ + YE LSDP  R  Y
Sbjct: 6  YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAY 65

Query: 66 D 66
          D
Sbjct: 66 D 66

Length = 380

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 47.9 bits (115), Expect = 4e-09
 Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 4/53 (7%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG----RDFIEIHKTYEMLSD 58
          Y++L V P     EIK AY+ LA  YH D + +       F EI++ YE+LSD
Sbjct: 3  YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 50.6 bits (120), Expect = 1e-08
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          YEVL ++      EIK A++ LAK YH D      D    F EI++  ++LS+P  R  Y
Sbjct: 5  YEVLGIDRDADEQEIKKAFRKLAKKYHPD-RNKAPDAASIFAEINEANDVLSNPKKRANY 63

Query: 66 D 66
          D
Sbjct: 64 D 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 12/77 (15%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNGRD----FIEIHKTYEMLSDPTARVV 64
          Y++L V+      +IK A++ LAK +H DL  GN  +    F EI + YE+LSDP  R  
Sbjct: 6  YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65

Query: 65 YDMSLVSRRRTRTTSFG 81
          YD       +T T  FG
Sbjct: 66 YD-------QTGTVDFG 75

Length = 365

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDL-SGNG---RDFIEIHKTYEMLSDPTARVVY 65
          Y +L V  T    EIK AY+ LA  YH D   G+    + F E+ + YE+LSD   R  Y
Sbjct: 4  YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63

Query: 66 D 66
          D
Sbjct: 64 D 64

Length = 391

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 49.8 bits (120), Expect = 2e-08
 Identities = 29/63 (46%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD------FIEIHKTYEMLSDPTARV 63
          YEVL V       EIK AY+ LA  YH D   N  D      F EI + YE+LSDP  R 
Sbjct: 7  YEVLGVSRNASEDEIKKAYRKLAMKYHPD--RNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 64 VYD 66
           YD
Sbjct: 65 AYD 67

Length = 371

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG---RDFIEIHKTYEMLSDPTARVVYD 66
          Y ++ V+PT  +  IK AY+ LA+ YH D+S        F E+ + +E+LSD   R  YD
Sbjct: 7  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66

Length = 306

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 3/63 (4%)

Query: 7  GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARV 63
             YE+L V       E+K AY+ LA+ YH D++   G    F EI++ YE+LSDP  R 
Sbjct: 3  ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 64 VYD 66
           YD
Sbjct: 63 RYD 65

Length = 374

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYD 66
          Y +L V      +EIK AY+ LA+  H D++ +      F EI   YE+LSDP  R + D
Sbjct: 6  YGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVD 65

Query: 67 M 67
          +
Sbjct: 66 L 66

Length = 378

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 47.9 bits (114), Expect = 8e-08
 Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-----FIEIHKTYEMLSDPTARVV 64
          YE+L V       EIK AY+ L K +H D     R      F EI + YE+LSDP  R +
Sbjct: 7  YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66

Query: 65 YD 66
          YD
Sbjct: 67 YD 68

Length = 369

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 48.1 bits (114), Expect = 9e-08
 Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG---RDFIEIHKTYEMLSDPTARVVYD 66
          Y++L V  T   +++K AY  LAK YH D +      + F EI+  Y++L D   R  YD
Sbjct: 6  YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYD 65

Query: 67 MSLVSRRRTRTTSFGCLCWSGFHP 90
                 + + +  G     GFHP
Sbjct: 66 RFGHDAFQNQQSRGGGGNHGGFHP 89

Length = 372

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDL---SGNGRDFIEIHKTYEMLSDPTARVVYD 66
          YEVL V  T    EI+ AY+ LAK YH DL          +EI++  ++L D   R  YD
Sbjct: 7  YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYD 66

Length = 372

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          YEVL V  T  + EIK AY+  A  YH D +   ++    F E  + Y++LSDP  R  Y
Sbjct: 8  YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRY 67

Query: 66 D 66
          D
Sbjct: 68 D 68

Length = 386

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
          YEVL V+      EIK AY+ LA+ YH D+S   G    F EI + Y +LSD   R  YD
Sbjct: 8  YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYD 67

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG--NGRD-FIEIHKTYEMLSDPTARVVYD 66
          YEVL V+    + E+K AY+ LA+ YH D++   +  D F E+ + Y+ LSDP  +  YD
Sbjct: 7  YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYD 66

Length = 371

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 11/88 (12%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
          Y +L V       EIK A++ LA+ YH D++   G    F EI++ Y +LSDP  R +YD
Sbjct: 7  YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66

Query: 67 MSLVSRRRTRTTSFGCLCWSGFHPTRRW 94
                  T  T+     W G  P    
Sbjct: 67 --------TYGTTAASAGWQGPPPGPPG 86

Length = 291

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          YEVL +E      EIK A++ LA  YH D +   ++    F EI++ Y++LSDP  +  Y
Sbjct: 7  YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQY 66

Query: 66 D 66
          D
Sbjct: 67 D 67

Length = 380

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 25/61 (40%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNGR---DFIEIHKTYEMLSDPTARVVY 65
          Y+VL V      +EIK AY+ LA+ YH D + G+ +    F EI + Y++LSD   R  Y
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEY 71

Query: 66 D 66
          D
Sbjct: 72 D 72

Length = 389

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 45.6 bits (108), Expect = 7e-07
 Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          YEVL V  +    EIK AY+ LA  YH D + + ++    F E+++ YE+LS+   R  Y
Sbjct: 6  YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRY 65

Query: 66 D 66
          D
Sbjct: 66 D 66

Length = 397

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 44.9 bits (106), Expect = 9e-07
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
          YE+L V  T    EIK AY+ LA  YH D +   G    F +I++ Y +LSD   R  YD
Sbjct: 5  YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64

Length = 371

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 3  LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDP 59
          + T    YE+L +     + +IK AY+ LA  YH D +        F EI + Y +LSD 
Sbjct: 1  MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDA 60

Query: 60 TARVVYD 66
            R  YD
Sbjct: 61 EKRAQYD 67

Length = 377

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 44.0 bits (103), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKT-----YEMLSDPTAR 62
            YE+L V P   + EIK AY+ LA  YH D +       E         YE+LSDP  R
Sbjct: 7  DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66

Query: 63 VVYDMSLVSRRRTRTTSF 80
            YD           +  
Sbjct: 67 AEYDKIGADNYFPGKSYR 84

Length = 237

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          YE+L V       EIK +Y+ LA  YH D +   ++    F E  + YE+LSDP  R +Y
Sbjct: 7  YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66

Query: 66 D 66
          D
Sbjct: 67 D 67

Length = 366

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARV 63
          S Y++L V  +    EIK AY+ LA  YH D +   ++    F E  + YE+L DP  R 
Sbjct: 5  SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64

Query: 64 VYD 66
           YD
Sbjct: 65 AYD 67

Length = 372

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          YEVL V       EIK AY+ LA  YH D + +  +    F E  + YE+L D   R  Y
Sbjct: 7  YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARY 66

Query: 66 D 66
          D
Sbjct: 67 D 67

Length = 373

>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARV 63
          S YE+L VE  +    IK +Y+ LA  YH D +   ++    F  I++ Y +LSD   R 
Sbjct: 4  SYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRA 63

Query: 64 VYD 66
          +YD
Sbjct: 64 LYD 66

Length = 369

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 40.0 bits (93), Expect = 6e-05
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          YE+L +       EIK AY+ +A  YH D +   ++    F E  + YE+L D   R  Y
Sbjct: 6  YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQY 65

Query: 66 D 66
          D
Sbjct: 66 D 66

Length = 365

>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GN---GRDFIEIHKTYEMLSDPTARVVY 65
          Y+ L V       EIK AY+ LA+  H D + G+      F  + + +++LSDP  R  Y
Sbjct: 12 YKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEY 71

Query: 66 D 66
          D
Sbjct: 72 D 72

Length = 392

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	104
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.95
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.91
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.89
PRK14288	369	chaperone protein DnaJ; Provisional	99.88
PRK14296	372	chaperone protein DnaJ; Provisional	99.87
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.87
PRK14279	392	chaperone protein DnaJ; Provisional	99.85
PRK14286	372	chaperone protein DnaJ; Provisional	99.85
PRK14299	291	chaperone protein DnaJ; Provisional	99.85
PRK14298	377	chaperone protein DnaJ; Provisional	99.85
PRK14291	382	chaperone protein DnaJ; Provisional	99.84
PRK14287	371	chaperone protein DnaJ; Provisional	99.84
PRK14283	378	chaperone protein DnaJ; Provisional	99.84
PRK14282	369	chaperone protein DnaJ; Provisional	99.84
PRK14277	386	chaperone protein DnaJ; Provisional	99.84
PRK14276	380	chaperone protein DnaJ; Provisional	99.84
PRK14285	365	chaperone protein DnaJ; Provisional	99.83
PRK14280	376	chaperone protein DnaJ; Provisional	99.83
PRK14278	378	chaperone protein DnaJ; Provisional	99.83
PRK14294	366	chaperone protein DnaJ; Provisional	99.83
PRK14295	389	chaperone protein DnaJ; Provisional	99.83
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.82
PRK14284	391	chaperone protein DnaJ; Provisional	99.82
PRK14301	373	chaperone protein DnaJ; Provisional	99.82
PRK14297	380	chaperone protein DnaJ; Provisional	99.82
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.82
PRK10767	371	chaperone protein DnaJ; Provisional	99.81
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.81
PRK14281	397	chaperone protein DnaJ; Provisional	99.81
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PRK14289	386	chaperone protein DnaJ; Provisional	99.8
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.8
PRK14300	372	chaperone protein DnaJ; Provisional	99.8
PRK14290	365	chaperone protein DnaJ; Provisional	99.8
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.8
PRK14292	371	chaperone protein DnaJ; Provisional	99.79
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.79
PRK14293	374	chaperone protein DnaJ; Provisional	99.79
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.77
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.77
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.76
PHA03102	153	Small T antigen; Reviewed	99.76
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.75
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.74
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.72
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.7
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.68
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.68
PRK05014	171	hscB co-chaperone HscB; Provisional	99.67
PRK01356	166	hscB co-chaperone HscB; Provisional	99.66
PRK03578	176	hscB co-chaperone HscB; Provisional	99.63
PRK00294	173	hscB co-chaperone HscB; Provisional	99.63
PHA02624	647	large T antigen; Provisional	99.61
PTZ00100	116	DnaJ chaperone protein; Provisional	99.58
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.53
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.5
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	99.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.49
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	99.42
PRK01773	173	hscB co-chaperone HscB; Provisional	99.38
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	99.36
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	99.22
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	99.15
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	99.06
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	98.82
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	98.78
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.64
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	98.14
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.45
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	97.41
KOG0431	453	consensus Auxilin-like protein and related protein	97.24
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	97.02
PF13446	62	RPT: A repeated domain in UCH-protein	93.47
PF11833	194	DUF3353: Protein of unknown function (DUF3353); In	93.33
KOG3442	132	consensus Uncharacterized conserved protein [Funct	92.14
KOG0724	335	consensus Zuotin and related molecular chaperones	90.6
PF14687	112	DUF4460: Domain of unknown function (DUF4460)	87.4
COG5552	88	Uncharacterized conserved protein [Function unknow	85.46
PF10041	78	DUF2277: Uncharacterized conserved protein (DUF227	80.99

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.2e-27  Score=180.23  Aligned_cols=68  Identities=40%  Similarity=0.551  Sum_probs=64.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG----NGRDFIEIHKTYEMLSDPTARVVYDMSLVSRR   73 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (104)
                      .+|||+||||+++||.+|||+|||+|+++||||+++    ++++|++|++||+|||||++|+.||+++....
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~   74 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGF   74 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCcccc
Confidence            689999999999999999999999999999999988    27899999999999999999999999999644

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=1.7e-24  Score=160.57  Aligned_cols=67  Identities=39%  Similarity=0.506  Sum_probs=63.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ...+|||+||||+++|+..+||+|||+||+++|||+|++    .+.|+.|+.||+|||||.+|+.||.+|.
T Consensus        13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GE   83 (336)
T KOG0713|consen   13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGE   83 (336)
T ss_pred             hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhH
Confidence            346899999999999999999999999999999999987    7799999999999999999999999996

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=3.8e-23  Score=154.30  Aligned_cols=66  Identities=42%  Similarity=0.654  Sum_probs=63.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .+.||+||||+++|+.+|||+|||+|+++||||++++ .++|++|.+||+|||||++|++||+++..
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~   69 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEE   69 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence            5789999999999999999999999999999999998 67999999999999999999999999973

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.88  E-value=9.3e-23  Score=154.67  Aligned_cols=65  Identities=35%  Similarity=0.473  Sum_probs=61.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----cHHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG----NGRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..|||+||||+++||.++||+|||+|+++||||+++    +.++|++|++||+||+||.+|..||+++.
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~   70 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGK   70 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcc
Confidence            479999999999999999999999999999999876    26799999999999999999999999886

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.87  E-value=2e-22  Score=152.98  Aligned_cols=65  Identities=37%  Similarity=0.502  Sum_probs=61.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..|||+||||+++|+.++||+|||+|+++||||++++   .++|++|++||+||+||.+|+.||+++.
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~   70 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGH   70 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccc
Confidence            4799999999999999999999999999999998753   6799999999999999999999999876

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.87  E-value=1.8e-22  Score=155.30  Aligned_cols=66  Identities=42%  Similarity=0.587  Sum_probs=63.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++||.++||+|||+|+++||||++++.++|++|++||+||+||.+|..||.++..
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~   92 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEE   92 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcch
Confidence            569999999999999999999999999999999998889999999999999999999999998763

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=8.1e-22  Score=150.56  Aligned_cols=65  Identities=31%  Similarity=0.454  Sum_probs=61.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      .+|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||+||+||.+|+.||+++.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            4799999999999999999999999999999999863    6799999999999999999999999874

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.5e-21  Score=148.22  Aligned_cols=65  Identities=37%  Similarity=0.516  Sum_probs=61.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||+||+||.+|..||+++.
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGK   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCc
Confidence            4799999999999999999999999999999999763    6799999999999999999999999876

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=6.2e-21  Score=140.77  Aligned_cols=66  Identities=35%  Similarity=0.569  Sum_probs=61.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||++++++|||+++.   .++|++|++||++|+||.+|..||.++..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            4799999999999999999999999999999999863   67999999999999999999999998864

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.85  E-value=1.6e-21  Score=148.31  Aligned_cols=67  Identities=34%  Similarity=0.505  Sum_probs=62.3

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ....|||+||||+++|+.++||+|||+|++++|||+++.   .++|++|++||+||+||.+|..||+++.
T Consensus         2 ~~~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   71 (377)
T PRK14298          2 ATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGH   71 (377)
T ss_pred             CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCc
Confidence            345799999999999999999999999999999998754   6799999999999999999999999876

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=8.5e-21  Score=144.51  Aligned_cols=66  Identities=39%  Similarity=0.627  Sum_probs=61.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.   .++|++|++||+||+||.+|..||.++..
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~   70 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHA   70 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhccc
Confidence            4799999999999999999999999999999998863   67999999999999999999999998863

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4e-21  Score=145.86  Aligned_cols=66  Identities=35%  Similarity=0.605  Sum_probs=61.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.   +++|++|++||++|+||.+|..||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~   71 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHT   71 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCc
Confidence            4799999999999999999999999999999998753   67999999999999999999999998863

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=4.3e-21  Score=145.94  Aligned_cols=66  Identities=39%  Similarity=0.535  Sum_probs=61.8

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG---NGRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ...|||+||||+++|+.++||+|||+|++++|||+++   +.++|++|++||++|+||.+|..||.++.
T Consensus         3 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~   71 (378)
T PRK14283          3 EKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGH   71 (378)
T ss_pred             CcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcc
Confidence            3689999999999999999999999999999999975   37799999999999999999999999875

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5e-21  Score=145.16  Aligned_cols=66  Identities=38%  Similarity=0.567  Sum_probs=61.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.     .++|++|++||+||+||.+|..||.++..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~   73 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYV   73 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCcc
Confidence            4799999999999999999999999999999999753     57999999999999999999999998763

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=5.6e-21  Score=145.67  Aligned_cols=65  Identities=43%  Similarity=0.645  Sum_probs=61.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    +++|++|++||+||+||.+|..||.++.
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~   72 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGH   72 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcc
Confidence            4799999999999999999999999999999998763    5799999999999999999999999876

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.84  E-value=6e-21  Score=145.23  Aligned_cols=66  Identities=35%  Similarity=0.567  Sum_probs=61.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||+|+++||||++++   .++|++|++||+||+||.+|..||.++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~   71 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAA   71 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCc
Confidence            4799999999999999999999999999999998754   68999999999999999999999998863

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=7.2e-21  Score=144.21  Aligned_cols=66  Identities=32%  Similarity=0.428  Sum_probs=61.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||+||+||.+|..||.++..
T Consensus         2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285          2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            3799999999999999999999999999999999763    57899999999999999999999998763

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.2e-20  Score=143.53  Aligned_cols=66  Identities=39%  Similarity=0.577  Sum_probs=61.6

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.   .++|++|++||+||+||.+|..||.++..
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~   71 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHA   71 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCcc
Confidence            3799999999999999999999999999999998753   78999999999999999999999998763

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1e-20  Score=143.91  Aligned_cols=65  Identities=35%  Similarity=0.506  Sum_probs=61.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .|||+||||+++|+.++||+|||+|++++|||++++   .++|++|++||+||+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            699999999999999999999999999999999865   56899999999999999999999998763

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.3e-20  Score=142.77  Aligned_cols=66  Identities=36%  Similarity=0.501  Sum_probs=61.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    .++|++|++||+||+||.+|..||.++..
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~   72 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHE   72 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhccc
Confidence            5799999999999999999999999999999999863    67999999999999999999999998863

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.83  E-value=1.5e-20  Score=143.47  Aligned_cols=62  Identities=39%  Similarity=0.574  Sum_probs=58.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhh
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDM   67 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~   67 (104)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    +++|++|++||+||+||.+|..||+
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~   73 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE   73 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence            4699999999999999999999999999999998763    6799999999999999999999998

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.82  E-value=1.2e-20  Score=110.40  Aligned_cols=59  Identities=42%  Similarity=0.693  Sum_probs=55.5

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-H----HHHHHHHHHHHHcCChhHHHHHh
Q 040915            8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-G----RDFIEIHKTYEMLSDPTARVVYD   66 (104)
Q Consensus         8 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~----~~f~~i~~Ay~~L~d~~~R~~YD   66 (104)
                      |||+||||+++++.++|+++|+++++++|||+.+. .    +.|..|++||++|++|.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            68999999999999999999999999999998544 3    69999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.5e-20  Score=143.46  Aligned_cols=64  Identities=38%  Similarity=0.492  Sum_probs=60.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      .|||+||||+++|+.++||+|||+++++||||+++.    .++|++|++||+||+||.+|+.||+++.
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~   68 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGK   68 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccc
Confidence            489999999999999999999999999999999863    6799999999999999999999999876

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.6e-20  Score=142.63  Aligned_cols=66  Identities=36%  Similarity=0.479  Sum_probs=61.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.    +++|++|++||+||+||.+|..||.++..
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~   72 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHA   72 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhcccc
Confidence            4799999999999999999999999999999999763    56999999999999999999999998763

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.82  E-value=1.7e-20  Score=142.72  Aligned_cols=66  Identities=36%  Similarity=0.523  Sum_probs=61.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++|+.++||+|||+|+++||||+++.    +++|++|++||+||+||.+|..||+++..
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~   72 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTA   72 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCcc
Confidence            3799999999999999999999999999999998863    67999999999999999999999998763

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.82  E-value=2e-20  Score=135.57  Aligned_cols=65  Identities=46%  Similarity=0.634  Sum_probs=61.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..++|+||||+++|+.++||++||++++++|||++++    .++|++||+||+||+||.+|..||.++.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~   98 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGE   98 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhh
Confidence            5679999999999999999999999999999998776    6799999999999999999999999976

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.6e-20  Score=140.48  Aligned_cols=65  Identities=42%  Similarity=0.578  Sum_probs=61.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.    .++|++|++||++|+||.+|..||.++.
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~   71 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGH   71 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccc
Confidence            4799999999999999999999999999999999763    5799999999999999999999999876

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.81  E-value=1.4e-19  Score=134.40  Aligned_cols=64  Identities=36%  Similarity=0.585  Sum_probs=60.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      .|||+||||+++++.++||+|||+|++++|||+++.   .++|++|++||++|+||.+|..||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            699999999999999999999999999999998753   7799999999999999999999999764

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.81  E-value=3.4e-20  Score=141.84  Aligned_cols=65  Identities=37%  Similarity=0.493  Sum_probs=61.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .|||+||||+++|+.++||+|||+|++++|||+++.    .++|++|++||++|+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~   71 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHA   71 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccch
Confidence            699999999999999999999999999999998864    57999999999999999999999998763

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=7.1e-20  Score=135.13  Aligned_cols=66  Identities=39%  Similarity=0.626  Sum_probs=61.9

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      .|||+||||+++|+..|||+||++|+++||||.+..   .++|++|.+||+||+|+++|+.||..+...
T Consensus        43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            399999999999999999999999999999997654   789999999999999999999999998864

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=9.6e-20  Score=138.83  Aligned_cols=65  Identities=38%  Similarity=0.533  Sum_probs=61.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..|||+||||+++|+.++||+|||+|++++|||+++.    .++|++|++||++|+||.+|..||.++.
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~   72 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGH   72 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcc
Confidence            5799999999999999999999999999999999863    6799999999999999999999999875

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=7.3e-20  Score=140.29  Aligned_cols=67  Identities=39%  Similarity=0.505  Sum_probs=62.4

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ...+.||+||||..+++..+||++||+||+++|||++++     +++|+.|+.||+|||||..|..||....
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre   76 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHRE   76 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence            456799999999999999999999999999999999876     7799999999999999999999997655

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=9.3e-20  Score=138.41  Aligned_cols=64  Identities=34%  Similarity=0.532  Sum_probs=60.5

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      .|||+||||+++|+.++||+|||++++++|||+++.   +++|++|++||++|+|+.+|..||.++.
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~   69 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGH   69 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccc
Confidence            699999999999999999999999999999998753   6799999999999999999999999876

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.80  E-value=9.9e-20  Score=137.93  Aligned_cols=65  Identities=37%  Similarity=0.577  Sum_probs=60.9

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .|||+||||+++|+.++||+|||+|++++|||+++.     .++|++|++||++|+||.+|..||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            699999999999999999999999999999998753     57999999999999999999999998763

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.80  E-value=1.1e-19  Score=137.11  Aligned_cols=64  Identities=42%  Similarity=0.592  Sum_probs=60.0

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG---NGRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         8 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      |||+||||+++|+.++||+|||++++++|||+++   +.++|++|++||+||+|+.+|..||.++..
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~   67 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHA   67 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhcccc
Confidence            7999999999999999999999999999999975   367999999999999999999999998763

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=1.3e-19  Score=137.40  Aligned_cols=65  Identities=37%  Similarity=0.512  Sum_probs=61.2

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      +|||+||||+++|+.++||+|||+|++++|||+++.   .++|+.|++||+||+||.+|..||.++..
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~   69 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTA   69 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCc
Confidence            599999999999999999999999999999998864   67999999999999999999999998764

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.7e-19  Score=133.16  Aligned_cols=67  Identities=33%  Similarity=0.480  Sum_probs=63.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      ..|||+||||+++++..+|++||+..++++|||++++    .+.|+.|.+||+||+|+..|..||..+...
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~   74 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSG   74 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc
Confidence            7899999999999999999999999999999999987    779999999999999999999999999853

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.79  E-value=2.4e-19  Score=136.22  Aligned_cols=65  Identities=38%  Similarity=0.590  Sum_probs=61.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..|||+||||+++|+.++||+|||++++++|||+++.   .++|+.|++||+||+||.+|..||.++.
T Consensus         2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~   69 (374)
T PRK14293          2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGE   69 (374)
T ss_pred             CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccc
Confidence            3699999999999999999999999999999998753   7899999999999999999999999876

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=6.6e-19  Score=135.35  Aligned_cols=65  Identities=34%  Similarity=0.559  Sum_probs=61.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .+||.+|+|+++||.++|++|||++++.+|||+..+       ++.|+.|.+||+|||||.+|.+||.+|..
T Consensus         9 ~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~q   80 (546)
T KOG0718|consen    9 IELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQ   80 (546)
T ss_pred             hhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhc
Confidence            489999999999999999999999999999997663       77999999999999999999999999984

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.77  E-value=8.5e-19  Score=143.86  Aligned_cols=67  Identities=22%  Similarity=0.320  Sum_probs=62.5

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..++||+||||+++|+..+||+|||+||+++|||+++.   .++|+.|++||+||+||.+|..||.+|..
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~  640 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYD  640 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccc
Confidence            35799999999999999999999999999999999864   67999999999999999999999998874

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.76  E-value=1e-18  Score=100.65  Aligned_cols=54  Identities=43%  Similarity=0.650  Sum_probs=50.7

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----cHHHHHHHHHHHHHcCChh
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG-----NGRDFIEIHKTYEMLSDPT   60 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----~~~~f~~i~~Ay~~L~d~~   60 (104)
                      +|||+||||+++++.++|+++|+++++++|||+.+     ..+.|..|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999999999999999999999999987     3779999999999999985

>PHA03102 Small T antigen; Reviewed

Probab=99.76  E-value=8.3e-19  Score=118.94  Aligned_cols=66  Identities=14%  Similarity=0.215  Sum_probs=62.6

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            7 GSLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         7 ~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      ..+|+||||+++|  |..+||+|||++++++|||++++.++|++|++||++|+++.+|..||..+...
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~   72 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDS   72 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCcc
Confidence            4679999999999  99999999999999999999999999999999999999999999999998754

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=1.9e-18  Score=123.19  Aligned_cols=68  Identities=37%  Similarity=0.516  Sum_probs=62.9

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      ..+|+|+||||.++|+..+|++||+++++.+|||++..      .++|+.|+.||.||+|..+|..||.+|...
T Consensus        12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            45699999999999999999999999999999998842      679999999999999999999999999864

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.74  E-value=5.2e-18  Score=96.04  Aligned_cols=51  Identities=43%  Similarity=0.668  Sum_probs=48.2

Q ss_pred             CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCC
Q 040915            8 SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSD   58 (104)
Q Consensus         8 d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d   58 (104)
                      |||+||||+++++.++|+++|+++++++|||+.+.    .+.|..|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999998873    7799999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.6e-17  Score=117.36  Aligned_cols=69  Identities=30%  Similarity=0.430  Sum_probs=63.2

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC----ccHHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS----GNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRR   73 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~----~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (104)
                      ...|+|+||||+|+++..|||+|||+|++++|||+.    +.++.|..|++||+.|+|+..|+.|..++....
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            356999999999999999999999999999999995    347789999999999999999999999998543

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=2.7e-17  Score=113.45  Aligned_cols=66  Identities=41%  Similarity=0.594  Sum_probs=61.1

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSL   69 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~   69 (104)
                      ....+||+||||+++++..+|+++||++++++|||+++.     .+.|..|++||++|+|+..|..||..+
T Consensus         3 ~~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            456799999999999999999999999999999998774     489999999999999999999999863

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.68  E-value=6.9e-17  Score=130.32  Aligned_cols=65  Identities=35%  Similarity=0.488  Sum_probs=60.6

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .|||+||||+++|+..+||++||+|++++|||+++.   .++|+.|++||++|+||.+|..||.++..
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~a   69 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHD   69 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccc
Confidence            699999999999999999999999999999998764   56899999999999999999999998763

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.68  E-value=4.7e-17  Score=122.59  Aligned_cols=67  Identities=31%  Similarity=0.471  Sum_probs=61.8

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      +.++|||+||||.++|+.-+|.+|||+++.++|||...+       +.+|+-|..|-+||+||++|+.||..-.
T Consensus       391 s~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGeD  464 (504)
T KOG0624|consen  391 SGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGED  464 (504)
T ss_pred             hccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCCC
Confidence            457899999999999999999999999999999996655       5689999999999999999999998766

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.67  E-value=2.1e-16  Score=109.03  Aligned_cols=66  Identities=21%  Similarity=0.309  Sum_probs=58.2

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            7 GSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         7 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      +|||+||||++.  ++..+|+++|+++++++|||+...         .+.+..||+||+||+||.+|..|+..+.+.
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g~   77 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHGF   77 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcCC
Confidence            489999999996  678999999999999999997542         347899999999999999999999877753

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.66  E-value=2.4e-16  Score=108.33  Aligned_cols=66  Identities=18%  Similarity=0.255  Sum_probs=58.4

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            7 GSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         7 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      .|||+||||++.  ++..+|+++|+++++++|||+...       ...+..|++||+||+||.+|..|+..+.+.
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g~   76 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQNI   76 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccCC
Confidence            489999999997  689999999999999999998754       224789999999999999999999888753

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.63  E-value=9.4e-16  Score=106.28  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=59.5

Q ss_pred             CCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            4 GTRGSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      +...|||+||||++.  ++..+|+++|+++++++|||+...         .+.+..||+||++|+||.+|..|...+.+.
T Consensus         3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G~   82 (176)
T PRK03578          3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRGV   82 (176)
T ss_pred             CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcCC
Confidence            346899999999986  578999999999999999997653         234689999999999999999999877753

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.63  E-value=1.4e-15  Score=105.12  Aligned_cols=68  Identities=18%  Similarity=0.361  Sum_probs=60.2

Q ss_pred             CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            5 TRGSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      ...|||++|||++.  .+..+|+++|+++++++|||+...         .+.+..||+||+||+||.+|..|+..+.+.
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g~   80 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSGH   80 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            36799999999998  568999999999999999998643         347899999999999999999999888754

>PHA02624 large T antigen; Provisional

Probab=99.61  E-value=8.8e-16  Score=122.16  Aligned_cols=65  Identities=17%  Similarity=0.277  Sum_probs=60.5

Q ss_pred             CCCCccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHh
Q 040915            2 ALGTRGSLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD   66 (104)
Q Consensus         2 ~~~~~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD   66 (104)
                      +.....++|+||||+++|  +.++||+|||++++++|||+.++.++|++|++||++|+|+.+|..|.
T Consensus         6 tree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~~   72 (647)
T PHA02624          6 SREESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQS   72 (647)
T ss_pred             chHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhcc
Confidence            344567899999999999  99999999999999999999999999999999999999999999994

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.58  E-value=2.4e-15  Score=97.69  Aligned_cols=52  Identities=21%  Similarity=0.316  Sum_probs=49.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLS   57 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~   57 (104)
                      ..++|+||||+++++.++|+++||++++++|||+.+..+.|++|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999999888999999999999985

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=9.8e-15  Score=112.25  Aligned_cols=66  Identities=21%  Similarity=0.320  Sum_probs=62.1

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|+|.+|||+++++.++||+.||+++...||||+..   ++.|+.|+.||++|+|+++|..||..+..
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            6799999999999999999999999999999998754   88999999999999999999999988774

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.3e-14  Score=105.19  Aligned_cols=69  Identities=33%  Similarity=0.470  Sum_probs=63.0

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVSRR   73 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (104)
                      ...|+|+||||.+.++..+|.+|||+|++++|||++.+   .+.|..|.+||++|.|.+.|..||-.+..+.
T Consensus        31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd  102 (329)
T KOG0722|consen   31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPD  102 (329)
T ss_pred             cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCch
Confidence            45799999999999999999999999999999997765   5689999999999999999999999888544

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=7.4e-14  Score=100.35  Aligned_cols=65  Identities=35%  Similarity=0.531  Sum_probs=60.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccH-----HHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG-----RDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~-----~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..|+|+||+|.+.|+.++|++||+++++++|||+++..     .+|++|.+||++|+|+.+|..||.++.
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~   71 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGE   71 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCc
Confidence            47999999999999999999999999999999986543     479999999999999999999999998

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.7e-14  Score=109.19  Aligned_cols=68  Identities=34%  Similarity=0.490  Sum_probs=62.7

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      +.+++||.||||.+.++..+|+++||++++.+|||++..     +.+|++|-+||.+|+||.+|..||..-..
T Consensus       370 SkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~dl  442 (486)
T KOG0550|consen  370 SKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQDL  442 (486)
T ss_pred             hhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccch
Confidence            568899999999999999999999999999999998765     55899999999999999999999987663

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=99.42  E-value=1.8e-13  Score=100.24  Aligned_cols=53  Identities=30%  Similarity=0.333  Sum_probs=47.9

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-----------cHHHHHHHHHHHHHcCC
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG-----------NGRDFIEIHKTYEMLSD   58 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-----------~~~~f~~i~~Ay~~L~d   58 (104)
                      ..++|+||||++++|.++||++||++++++|||+..           +.++|++|++||++|+.
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999999999999999999842           25799999999999975

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=99.38  E-value=1.3e-12  Score=90.32  Aligned_cols=64  Identities=19%  Similarity=0.230  Sum_probs=57.1

Q ss_pred             cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            7 GSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         7 ~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      .|||++|||++.  .+...|+++|+.+.+++|||+...         .+.-..||+||.||+||.+|..|=..+.
T Consensus         2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            499999999987  789999999999999999997543         3357899999999999999999998777

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=99.36  E-value=9.7e-13  Score=101.61  Aligned_cols=67  Identities=25%  Similarity=0.332  Sum_probs=62.2

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      ..|+|+||||..+++..+||++||+|+.++||||.+.         ++.+++|++||..|+|...|+.|-.+|...
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd  172 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD  172 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence            4699999999999999999999999999999998765         678999999999999999999999998853

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=99.22  E-value=4.1e-11  Score=81.70  Aligned_cols=54  Identities=26%  Similarity=0.413  Sum_probs=47.4

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915           19 TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus        19 a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      .+..+|+++|+++++++|||+.+.         ...+..||+||+||+||.+|..|+..+.+.
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g~   65 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHGI   65 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcCC
Confidence            467899999999999999997432         457999999999999999999999988853

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=7.2e-11  Score=83.16  Aligned_cols=62  Identities=24%  Similarity=0.376  Sum_probs=56.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhh
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDM   67 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~   67 (104)
                      ..|+|+||.|.|..+.++||+.||+|++..|||++++     ...|--|..||..|.|+..|..-+.
T Consensus        52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            5699999999999999999999999999999999998     4589999999999999987766554

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=2.2e-10  Score=84.14  Aligned_cols=67  Identities=25%  Similarity=0.291  Sum_probs=58.3

Q ss_pred             CCccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCCc------cHHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            4 GTRGSLYEVLRVEP---TTMISEIKMAYQSLAKVYHLDLSG------NGRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~---~a~~~~Ik~ayr~l~~~~hPD~~~------~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      +...|+|.+|||+.   .++..+|.++.++.+.+||||+..      ..+-|..|+.|++||+|+.+|..||.---
T Consensus        40 Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df  115 (379)
T COG5269          40 WKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDF  115 (379)
T ss_pred             hhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccc
Confidence            34679999999995   478999999999999999999752      27799999999999999999999996443

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=7.5e-09  Score=74.75  Aligned_cols=52  Identities=27%  Similarity=0.473  Sum_probs=46.8

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHH-HcCC
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYE-MLSD   58 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~-~L~d   58 (104)
                      +.||.||||..+|+.++++.+|..|++++|||....   .+.|++|.+||. ||+.
T Consensus        47 ~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~  102 (342)
T KOG0568|consen   47 MECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE  102 (342)
T ss_pred             HHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999997654   679999999999 6653

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.6e-08  Score=64.65  Aligned_cols=51  Identities=22%  Similarity=0.208  Sum_probs=47.1

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 040915            9 LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDP   59 (104)
Q Consensus         9 ~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~   59 (104)
                      --.||||++.++.++||+++|++....|||+.+....-..||+|+++|...
T Consensus        58 A~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~  108 (112)
T KOG0723|consen   58 AALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT  108 (112)
T ss_pred             HHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence            345999999999999999999999999999999999999999999999754

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=3.9e-08  Score=82.80  Aligned_cols=51  Identities=33%  Similarity=0.454  Sum_probs=45.1

Q ss_pred             cCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcC
Q 040915            7 GSLYEVLRVEPT----TMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLS   57 (104)
Q Consensus         7 ~d~Y~iLgv~~~----a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~   57 (104)
                      -+-|+||.|+-+    ...++||++|++++.+|||||++. .+.|..|++||+.|+
T Consensus      1281 d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1281 DLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             HHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            366999999843    456889999999999999999987 789999999999998

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=3.4e-06  Score=57.42  Aligned_cols=69  Identities=26%  Similarity=0.480  Sum_probs=57.2

Q ss_pred             CCCccCcccccccCC--CCCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            3 LGTRGSLYEVLRVEP--TTMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         3 ~~~~~d~Y~iLgv~~--~a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ++...+||.|||...  -..++.+...|....+++|||+...         .+....|++||.+|.||-+|..|=..+.+
T Consensus         4 ~~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g   83 (168)
T KOG3192|consen    4 MGSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG   83 (168)
T ss_pred             cchHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence            356789999998664  4577778889999999999996322         56789999999999999999999887776

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=7.2e-05  Score=51.64  Aligned_cols=50  Identities=30%  Similarity=0.355  Sum_probs=43.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIHKTYEML   56 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----------~~~f~~i~~Ay~~L   56 (104)
                      .+.|.+|+|.......+|+++|+++...+|||+..+           .+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999995332           56788888888753

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=97.41  E-value=0.00041  Score=45.90  Aligned_cols=53  Identities=19%  Similarity=0.154  Sum_probs=41.9

Q ss_pred             cccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhH
Q 040915            9 LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTA   61 (104)
Q Consensus         9 ~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~   61 (104)
                      -..||||++..+.++|.+.|.+|....+|++.+....-..|..|.+.|..+.+
T Consensus        60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El~  112 (127)
T PF03656_consen   60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQELK  112 (127)
T ss_dssp             HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999988999999999875543

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]

Probab=97.24  E-value=0.00039  Score=54.64  Aligned_cols=41  Identities=15%  Similarity=0.212  Sum_probs=31.1

Q ss_pred             cCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHH
Q 040915           15 VEPTTMISEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIHKTYEM   55 (104)
Q Consensus        15 v~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----------~~~f~~i~~Ay~~   55 (104)
                      +..-.+.++||++||+.++.+||||.+.           ++.|-.+++||..
T Consensus       396 ltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn~  447 (453)
T KOG0431|consen  396 LTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWNK  447 (453)
T ss_pred             hhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            3344689999999999999999998654           4456666666654

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.02  E-value=0.00054  Score=47.29  Aligned_cols=63  Identities=24%  Similarity=0.447  Sum_probs=50.6

Q ss_pred             CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            8 SLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         8 d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      +++.++|.++.+  ..+.++..|+.+.+.+|||....         .+.+..++.||.+|.+|..|..|=..+.
T Consensus         2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076           2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            456666776654  45568999999999999996543         3478999999999999999999987666

>PF13446 RPT: A repeated domain in UCH-protein

Probab=93.47  E-value=0.19  Score=28.69  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=31.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLS   57 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~   57 (104)
                      .+-|++|||+++.+.+.|..+|+.... -.|      .....+.+|..++.
T Consensus         5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia   48 (62)
T PF13446_consen    5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA   48 (62)
T ss_pred             HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence            356999999999999999999998777 222      23344455555554

>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised

Probab=93.33  E-value=0.26  Score=34.75  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=32.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcC
Q 040915           16 EPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLS   57 (104)
Q Consensus        16 ~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~   57 (104)
                      +++|+.+||.+|+.++..+|    ..+++.-.+|..||+.+.
T Consensus         1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL   38 (194)
T PF11833_consen    1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL   38 (194)
T ss_pred             CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence            47899999999999999999    445677888999999554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.

>KOG3442 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.14  E-value=0.53  Score=31.09  Aligned_cols=52  Identities=19%  Similarity=0.184  Sum_probs=42.2

Q ss_pred             ccccccCCCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhH
Q 040915           10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTA   61 (104)
Q Consensus        10 Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~   61 (104)
                      -.||+|++..+.++|.+.|..|-....+.+.+....--.|-.|-+.|...-.
T Consensus        62 ~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErld~El~  113 (132)
T KOG3442|consen   62 QQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERLDEELK  113 (132)
T ss_pred             hhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999998888876666667777777654433

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=90.60  E-value=0.35  Score=36.29  Aligned_cols=49  Identities=24%  Similarity=0.384  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHHHHHHHhCCCCCc--------cHHHHHHHHHHHHHcCChhHHHHHhh
Q 040915           19 TMISEIKMAYQSLAKVYHLDLSG--------NGRDFIEIHKTYEMLSDPTARVVYDM   67 (104)
Q Consensus        19 a~~~~Ik~ayr~l~~~~hPD~~~--------~~~~f~~i~~Ay~~L~d~~~R~~YD~   67 (104)
                      ++...|+.+|+..++..||++..        ..+.++.|.+||.+|.+...|...|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~   60 (335)
T KOG0724|consen    4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDS   60 (335)
T ss_pred             ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhh
Confidence            56788999999999999999663        26679999999999998654444443

>PF14687 DUF4460: Domain of unknown function (DUF4460)

Probab=87.40  E-value=1.7  Score=28.06  Aligned_cols=43  Identities=14%  Similarity=0.183  Sum_probs=31.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCcc--------HHHHHHHHHHHHHcCCh
Q 040915           17 PTTMISEIKMAYQSLAKVYHLDLSGN--------GRDFIEIHKTYEMLSDP   59 (104)
Q Consensus        17 ~~a~~~~Ik~ayr~l~~~~hPD~~~~--------~~~f~~i~~Ay~~L~d~   59 (104)
                      +..+..+++.+.|...++.|||....        ++-++.++.-.+.|..+
T Consensus         4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~   54 (112)
T PF14687_consen    4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKR   54 (112)
T ss_pred             hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhcc
Confidence            34567789999999999999995433        44566666666666543

>COG5552 Uncharacterized conserved protein [Function unknown]

Probab=85.46  E-value=6.1  Score=23.92  Aligned_cols=61  Identities=15%  Similarity=0.135  Sum_probs=39.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      +.|.-+++|+.|-++..||+.|-++.++++.--..+.   .+.|..-..+..    ...|+.-|..-.
T Consensus         2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~ia----A~areLLDaLet   65 (88)
T COG5552           2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEIA----ATARELLDALET   65 (88)
T ss_pred             ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHHH----HHHHHHHHhccc
Confidence            5677789999999999999999888888775443332   334433332222    344666665444

>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function

Probab=80.99  E-value=9.9  Score=23.00  Aligned_cols=36  Identities=14%  Similarity=0.017  Sum_probs=29.4

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG   41 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~   41 (104)
                      |.|.-.+.|+.|-++.+||..|-.+.++|..--..+
T Consensus         2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~P   37 (78)
T PF10041_consen    2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKP   37 (78)
T ss_pred             CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCc
Confidence            566677889999999999999999998888655433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	104
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		2e-07
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		2e-06
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		2e-06
1xbl_A	107	Nmr Structure Of The J-Domain (Residues 2-76) In Th		1e-05
1bqz_A	77	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-05
1bq0_A	103	J-Domain (Residues 1-77) Of The Escherichia Coli N-		1e-05
2dn9_A	79	Solution Structure Of J-Domain From The Dnaj Homolo		1e-05
2cug_A	88	Solution Structure Of The J Domain Of The Pseudo Dn		3e-05
2kqx_A	73	Nmr Structure Of The J-Domain (Residues 2-72) In Th		4e-05
3lz8_A	329	Structure Of A Putative Chaperone Dnaj From Klebsie		8e-05
2ctw_A	109	Solution Structure Of J-Domain From Mouse Dnaj Subf		1e-04
2dmx_A	92	Solution Structure Of The J Domain Of Dnaj Homolog		2e-04
2lgw_A	99	Solution Structure Of The J Domain Of Hsj1a Length		2e-04
3apq_A	210	Crystal Structure Of J-Trx1 Fragment Of Erdj5 Lengt		5e-04
3apo_A	780	Crystal Structure Of Full-Length Erdj5 Length = 780		5e-04
2ctp_A	78	Solution Structure Of J-Domain From Human Dnaj Subf		9e-04

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLSDPTARVVYD 66
          + Y+VL V+P     E+K AY+ LA  YH D + N G  F +I + YE+LSD   R +YD
Sbjct: 7  TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query: 2  ALGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDL-SGNGRDFIEIHKTYEMLSDPT 60
          A+     LY++L V P+    E+K  Y+  A  YH D  +G+   F EI + +E+L+DP 
Sbjct: 3  AMVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQ 62
Query: 61 ARVVYDM 67
           R +YD 
Sbjct: 63 KREIYDQ 69

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-FIEIHKTYEMLSDPTARVVYDM 67
          Y+VL V+P    +E+K AY+ +A  +H D + +G + F +I + YE+LSD   R +YD 
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69

>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI + YE+L+D   R  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 66 DM 67
          D 
Sbjct: 66 DQ 67

>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 5  TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPT 60
           +   YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI + YE+L+D  
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 61 ARVVYDM 67
           R  YD 
Sbjct: 61 KRAAYDQ 67

>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 5  TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPT 60
           +   YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI + YE+L+D  
Sbjct: 1  AKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQ 60
Query: 61 ARVVYDM 67
           R  YD 
Sbjct: 61 KRAAYDQ 67

>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog, Human Tid1 Protein Length = 79

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 4  GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG----RDFIEIHKTYEMLSDP 59
          G+ G  Y++L V       EIK AY  LAK YH D + +       F ++ + YE+LSD 
Sbjct: 4  GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 60 TARVVYDM 67
            R  YD 
Sbjct: 64 VKRKQYDA 71

>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj Protein, Mouse Hypothetical Mkiaa0962 Length = 88

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
          Y VL V  T   ++IK AY+ LA+ +H D +   G    FI+I K YE+LS+   R  YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The Escherichia Coli Cbpa Length = 73

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS----GNGRDFIEIHKTYEMLSDPTARVVY 65
          Y ++ V+PT  +  IK AY+ LA+ YH D+S       R F E+ + +E+LSD   R  Y
Sbjct: 8  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR-FKEVAEAWEVLSDEQRRAEY 66
Query: 66 DM 67
          D 
Sbjct: 67 DQ 68

>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG---RDFIEIHKTYEMLSDPTARVVYD 66
          Y +L V+PT  +  IK AY+ LA+ YH D+S        F ++ + +E+L D   R  YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90

>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C Menber 5 Length = 109

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 2  ALGTRG-SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEML 56
          +L T G SLY VL ++      +IK +Y+ LA  YH D + +  +    F EI+  + +L
Sbjct: 11 SLSTSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAIL 70
Query: 57 SDPTARVVYD 66
          +D T R +YD
Sbjct: 71 TDATKRNIYD 80

>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog Subfamily B Member 8 Length = 92

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 17/81 (20%)
Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIE-----IHKTYEMLSDPTARVV 64
          YEVL V+ +    +IK AY+ LA  +H D + + ++  E     + + YE+LSD   R +
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71
Query: 65 YDMSLVSXXXXXXXSFGCLCW 85
          YD +            GC  W
Sbjct: 72 YDRA------------GCDSW 80

>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a Length = 99

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFI-----EIHKTYEMLSDPTAR 62
          S YE+L V  +    +IK AY+  A  +H D + + ++F      E+ + YE+LSD   R
Sbjct: 3  SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 63 VVYD 66
           +YD
Sbjct: 63 EIYD 66

>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5 Length = 210

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGR----DFIEIHKTYEMLSDPTARV 63
          + Y +L V  T    EI+ A++ LA   H D + N      DF++I++ YE+L D   R 
Sbjct: 3  NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 64 VYD 66
           YD
Sbjct: 63 KYD 65

>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5 Length = 780

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGR----DFIEIHKTYEMLSDPTARV 63
          + Y +L V  T    EI+ A++ LA   H D + N      DF++I++ YE+L D   R 
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 64 VYD 66
           YD
Sbjct: 82 KYD 84

>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B Menber 12 Length = 78

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 4  GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPT 60
          G+ G  YE+L V       ++K AY+ LA  +H D +   G    F  I   Y +LS+P 
Sbjct: 4  GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 61 ARVVYDM 67
           R  YD 
Sbjct: 64 KRKQYDQ 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	104
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	2e-14
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	8e-14
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	1e-13
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	2e-13
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	6e-13
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	7e-13
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	2e-12
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-12
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	3e-12
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	4e-12
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	4e-12
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	9e-12
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	1e-11
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	1e-11
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	2e-11
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	2e-11
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	2e-11
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	3e-11
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	3e-11
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	4e-11
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	4e-11
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	4e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-08
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	1e-08
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	3e-08
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	3e-08
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	7e-08
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	3e-07
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	5e-06
2guz_A	71	Mitochondrial import inner membrane translocase su	7e-06
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	2e-05
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	2e-05

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 62.3 bits (152), Expect = 2e-14
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNGRDFIEIHKTYEMLSDPTARVVYD 66
          LY++L V P+    E+K  Y+  A  YH D   G+   F EI + +E+L+DP  R +YD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 59.9 bits (146), Expect = 8e-14
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-FIEIHKTYEMLSDPTARVVYD 66
           Y+VL V+P    +E+K AY+ +A  +H D + +G + F +I + YE+LSD   R +YD
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 61.8 bits (150), Expect = 1e-13
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLD-LSGNGRD---------FIEIHKTYEMLSDP 59
          Y +L  +P+  IS++K  YQ L  +YH D  S +            FIEI + +++L + 
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

Query: 60 TARVVYDM 67
            +  YD+
Sbjct: 73 ETKREYDL 80

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 60.2 bits (146), Expect = 2e-13
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 9  LYEVLRVEPTTMIS--EIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66
          L ++L +E +   +   ++ AY    K +H D  G+     +++  Y+ + D        
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 58.6 bits (142), Expect = 6e-13
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARV 63
          SLY VL ++      +IK +Y+ LA  YH D + +  +    F EI+  + +L+D T R 
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77

Query: 64 VYD 66
          +YD
Sbjct: 78 IYD 80

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 58.2 bits (141), Expect = 7e-13
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDL-SGNGRD---------FIEIHKTYEMLSDP 59
          Y +L  +P+  +S++K  YQ L  +YH D  S +            FIEI + +++L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 60 TARVVYDM 67
            +  YD+
Sbjct: 79 ETKKKYDL 86

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 57.4 bits (139), Expect = 2e-12
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVV 64
          LY++L V  T   ++IK AY     +YH D +    +    F  I + Y +L   T R  
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78

Query: 65 YD 66
          YD
Sbjct: 79 YD 80

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 56.5 bits (137), Expect = 2e-12
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          Y++L V       EIK AY  LAK YH D + +       F ++ + YE+LSD   R  Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69

Query: 66 D 66
          D
Sbjct: 70 D 70

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 58.4 bits (141), Expect = 3e-12
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 9  LYEVLRVEPTTMIS--EIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66
          L ++L +E +   +   ++ AY    K +H D  G+     +++  Y+ + D        
Sbjct: 13 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 72

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 56.2 bits (136), Expect = 4e-12
 Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
          Y VL V  T   ++IK AY+ LA+ +H D +   G    FI+I K YE+LS+   R  YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 58.7 bits (142), Expect = 4e-12
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          Y +L V  T    EI+ A++ LA   H D + N  +    F++I++ YE+L D   R  Y
Sbjct: 5  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

Query: 66 D 66
          D
Sbjct: 65 D 65

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 55.0 bits (133), Expect = 9e-12
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS---GNGRDFIEIHKTYEMLSDPTARVVYD 66
          YE+L V       ++K AY+ LA  +H D +   G    F  I   Y +LS+P  R  YD
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 69

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 58.2 bits (140), Expect = 1e-11
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          Y +L V  T    EI+ A++ LA   H D + N  +    F++I++ YE+L D   R  Y
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83

Query: 66 DMSLVSRRRTRTTSFG 81
          D               
Sbjct: 84 DKYGEKGLEDNQGGQY 99

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 55.1 bits (133), Expect = 1e-11
 Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          Y +L  +  + + +I   ++  A   H D           F ++ K  E+L++  +R  Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82

Query: 66 D 66
          D
Sbjct: 83 D 83

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 54.2 bits (131), Expect = 2e-11
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNGRD----FIEIHKTYEMLSDPTARVV 64
          YEVL V        IK AY+ LA  +H D +  N  +    F ++ + YE+LSD   R +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 65 YD 66
          YD
Sbjct: 72 YD 73

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 54.2 bits (131), Expect = 2e-11
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNGRD----FIEIHKTYEMLSDPTARVV 64
          YEVL V+ +    +IK AY+ LA  +H D +  N  +    F  + + YE+LSD   R +
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 65 YD 66
          YD
Sbjct: 72 YD 73

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 54.7 bits (132), Expect = 2e-11
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)

Query: 10 YEVLRVEPT-TMISEIKMAYQSLAKVYHLDLSGNGRD-------FIEIHKTYEMLSDPTA 61
          Y+VL V        ++  AY++LA+ +H D   N  +       F  I   YE L D  A
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 62 RVVYD 66
          +  YD
Sbjct: 78 KTNYD 82

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 54.3 bits (131), Expect = 3e-11
 Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-----FIEIHKTYEMLSDPTARVV 64
          YE+L V  +    +IK AY+  A  +H D + + ++     F E+ + YE+LSD   R +
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 65 YD 66
          YD
Sbjct: 65 YD 66

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 53.7 bits (130), Expect = 3e-11
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDL---SGNGRDFIEIHKTYEMLSDPTARVVYD 66
          Y+ L +       EIK AY+  A  YH D     G    F EI + Y++LSDP  R ++D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 53.8 bits (130), Expect = 4e-11
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVVY 65
          YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI + YE+L+D   R  Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 66 D 66
          D
Sbjct: 66 D 66

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 53.5 bits (129), Expect = 4e-11
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG---RDFIEIHKTYEMLSDPTARVVYD 66
          Y++L V  +    +IK A+  LA  YH D + +      F EI + YE LSD   R  YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 51.3 bits (123), Expect = 4e-10
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-GRD--FIEIHKTYEMLSDPTAR 62
          +++L V+P     E+  AY+ LA + H D     G +  F  +      L      
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKS 85

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 7/65 (10%)

Query: 10  YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNG-------RDFIEIHKTYEMLSDPTAR 62
           Y++L V+      EI  AY+ LA  +H D   N        + FI+I    E+LSDP  R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 63  VVYDM 67
             +D 
Sbjct: 445 KKFDD 449

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLS-GNGRD--FIEIHKTYEMLSDPTARVVYD 66
          Y +L V+PT  +  IK AY+ LA+ YH D+S  N  +  F ++ + +E+L D   R  YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 47.7 bits (113), Expect = 3e-08
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 10 YEVLRVEPTTMI--SEIKMAYQSLAKVYHLDLSGNGRD---------FIEIHKTYEMLSD 58
          + +  +     +    + + +Q L + YH D   +G              I++ ++ L  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 59 PTARVVYDMSL 69
          P  R  Y +SL
Sbjct: 64 PLMRAEYLLSL 74

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 44.9 bits (106), Expect = 7e-08
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 9  LYEVLRVEPTTM--ISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66
          L E+L++          ++ AY+  + + H D  G+     E++  +         +  +
Sbjct: 13 LLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN 72

Query: 67 MS 68
          + 
Sbjct: 73 LG 74

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 45.4 bits (107), Expect = 3e-07
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 22 SEIKMAYQSLAKVYHLDLSGNGRD-FIEIHKTYEMLSDPTARVVYDMSL 69
          S ++  Y+ L   +H D++  G +    +++ Y  L DP  R  Y + L
Sbjct: 33 SRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 40.5 bits (95), Expect = 5e-06
 Identities = 11/62 (17%), Positives = 17/62 (27%), Gaps = 8/62 (12%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD-----FIEIHKTYEMLSDPTARVV 64
            V+        SE K   + L   +H D +    D     F  +      L     +  
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAF 75

Query: 65 YD 66
           D
Sbjct: 76 LD 77

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 39.6 bits (93), Expect = 7e-06
 Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 10 YEVLRVEPTTM-ISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTAR 62
           ++L +   T+   ++K  ++ +    H D  G+     +I++  + L      
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Length = 207

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 10  YEVLRVEPTTMIS--EIKMAYQSLAKVYHLDLSGNGRD---------FIEIHKTYEMLSD 58
           + ++    +  +   +++  YQ L ++ H D                   ++  Y+ L  
Sbjct: 46  FSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLA 105

Query: 59  PTARVVYDMS 68
           P +R +Y + 
Sbjct: 106 PLSRGLYLLK 115

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J Length = 182

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 9/65 (13%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 8   SLYEVLRVEPTTMISEIKMAYQSLAKVYHLD-LSGNGRD------FIEIHKTYEMLSDPT 60
           + ++ + +       ++K  Y+    V H D  +G   +      F+E++  +    +  
Sbjct: 118 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 177

Query: 61  ARVVY 65
            + +Y
Sbjct: 178 QKPLY 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	104
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.9
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.9
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.9
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.9
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.9
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.89
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.89
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.89
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.89
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.89
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.88
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.88
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.87
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.87
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.86
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.86
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.86
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.85
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.82
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.82
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.81
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.81
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.81
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.8
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.78
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.77
2guz_A	71	Mitochondrial import inner membrane translocase su	99.76
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.75
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.75
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.73
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.72
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.69
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.68
2guz_B	65	Mitochondrial import inner membrane translocase su	99.28
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.25
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	94.31

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.90  E-value=3.9e-24  Score=127.75  Aligned_cols=68  Identities=32%  Similarity=0.532  Sum_probs=62.1

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            3 LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         3 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      |....+||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..|.
T Consensus         4 m~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            4 MVKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             --CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             ccCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            4567899999999999999999999999999999999876 7899999999999999999999999874

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.90  E-value=6.9e-24  Score=128.27  Aligned_cols=69  Identities=36%  Similarity=0.538  Sum_probs=64.1

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            3 LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         3 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .+...|||+||||+++++.++||++|+++++++|||+++.    .+.|+.|++||++|+||.+|..||.++..
T Consensus         3 ~~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   75 (79)
T 2dn9_A            3 SGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSG   75 (79)
T ss_dssp             SSCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCC
T ss_pred             CCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCc
Confidence            4567899999999999999999999999999999998764    68999999999999999999999998864

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.90  E-value=4.5e-24  Score=132.76  Aligned_cols=70  Identities=31%  Similarity=0.536  Sum_probs=64.3

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            3 LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG-NGRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         3 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      |....|||+||||+++++.++||++|+++++++|||+++ ..+.|++|++||++|+||.+|..||.++...
T Consensus         4 m~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   74 (92)
T 2o37_A            4 MVKETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEA   74 (92)
T ss_dssp             CCSCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHH
T ss_pred             cccCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHH
Confidence            345689999999999999999999999999999999975 4789999999999999999999999988743

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=6.8e-24  Score=128.08  Aligned_cols=70  Identities=31%  Similarity=0.468  Sum_probs=64.6

Q ss_pred             CCCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            2 ALGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         2 ~~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      +.+...|||+||||+++++.++||++|+++++++|||+++.   .+.|+.|++||++|+||.+|..||..+..
T Consensus         2 s~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   74 (78)
T 2ctp_A            2 SSGSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSG   74 (78)
T ss_dssp             CCSCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSC
T ss_pred             CCCCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            34667899999999999999999999999999999999854   77999999999999999999999998875

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=130.17  Aligned_cols=69  Identities=38%  Similarity=0.516  Sum_probs=64.2

Q ss_pred             CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            3 LGTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         3 ~~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .+...|||+||||+++++.++||++|+++++++|||+++.   .+.|+.|++||++|+||.+|..||..+..
T Consensus         3 ~~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   74 (88)
T 2ctr_A            3 SGSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHS   74 (88)
T ss_dssp             SCCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHH
T ss_pred             CCCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            4567899999999999999999999999999999999875   67999999999999999999999998873

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.3e-23  Score=132.18  Aligned_cols=70  Identities=33%  Similarity=0.495  Sum_probs=64.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVSRR   73 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (104)
                      ....+||+||||+++++.++||++|+++++++|||+++.    .+.|+.|++||+||+||.+|..||..+....
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~e   87 (99)
T 2yua_A           14 YSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLSDE   87 (99)
T ss_dssp             SCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCCHH
T ss_pred             CCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccccc
Confidence            346799999999999999999999999999999999864    7799999999999999999999999887543

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.89  E-value=2.6e-23  Score=125.24  Aligned_cols=65  Identities=32%  Similarity=0.457  Sum_probs=61.3

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .|||+||||+++++.++||++|+++++++|||+++.   .+.|+.|++||++|+||.+|..||.++..
T Consensus         3 ~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   70 (77)
T 1hdj_A            3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccc
Confidence            699999999999999999999999999999998753   78999999999999999999999998864

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=3.2e-23  Score=126.12  Aligned_cols=68  Identities=34%  Similarity=0.446  Sum_probs=62.8

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      +...|||+||||+++++.++||++|+++++++|||+++.     .+.|+.|++||++|+||.+|..||.++..
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   78 (82)
T 2ej7_A            6 SGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSG   78 (82)
T ss_dssp             SSSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcc
Confidence            456799999999999999999999999999999999865     46899999999999999999999998864

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.89  E-value=3.4e-23  Score=127.80  Aligned_cols=69  Identities=35%  Similarity=0.465  Sum_probs=63.6

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      ....|||+||||+++++.++||++|+++++++|||+++.   .+.|+.|++||++|+||.+|..||.++...
T Consensus        14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   85 (88)
T 2cug_A           14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSGP   85 (88)
T ss_dssp             SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCCC
Confidence            346799999999999999999999999999999998763   789999999999999999999999998753

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=4.8e-23  Score=127.92  Aligned_cols=68  Identities=32%  Similarity=0.499  Sum_probs=62.8

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ....|||+||||+++++.++||++|+++++++|||+++.     .+.|+.|++||++|+||.+|..||..+..
T Consensus         6 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~   78 (92)
T 2dmx_A            6 SGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCD   78 (92)
T ss_dssp             CCCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSC
T ss_pred             CCCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            446799999999999999999999999999999998764     57999999999999999999999998864

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.88  E-value=1.3e-23  Score=130.79  Aligned_cols=69  Identities=26%  Similarity=0.522  Sum_probs=63.4

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc----------cHHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG----------NGRDFIEIHKTYEMLSDPTARVVYDMSLVSRR   73 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~----------~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (104)
                      ...|||+||||+++++.++||++|+++++++|||+++          +.+.|+.|++||+||+||.+|..||..+.++.
T Consensus        14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~~~   92 (94)
T 1wjz_A           14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGPS   92 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCSC
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCCC
Confidence            4679999999999999999999999999999999965          25799999999999999999999999998644

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.88  E-value=6e-23  Score=131.81  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=63.4

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ....|||+||||+++++.++||+|||++++++|||+++.    .+.|++|++||+||+||.+|..||..+..
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   88 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRS   88 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhh
Confidence            446899999999999999999999999999999998874    78999999999999999999999998874

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.87  E-value=2.6e-22  Score=128.32  Aligned_cols=90  Identities=24%  Similarity=0.296  Sum_probs=73.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcccccCCCCCC
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVSRRRTRTTS   79 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~   79 (104)
                      ....+||+||||+++++.++||++|+++++++|||+++.    .+.|+.|++||++|+||.+|..||..+.....     
T Consensus        14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~-----   88 (109)
T 2ctw_A           14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY-----   88 (109)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH-----
T ss_pred             CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc-----
Confidence            346799999999999999999999999999999999875    67999999999999999999999998863211     


Q ss_pred             CCCCCCCCCCCCCcHHHhHHhcCC
Q 040915           80 FGCLCWSGFHPTRRWEIIVEENGD  103 (104)
Q Consensus        80 ~~~~~~~~~~~~~~w~~~~~~~~~  103 (104)
                           ....+....|..++...+.
T Consensus        89 -----~~~~~~~~~~~~~~~~~~~  107 (109)
T 2ctw_A           89 -----VAEQFGEENVNTYFVSGPS  107 (109)
T ss_dssp             -----HHHHTCTTHHHHHHHSSSC
T ss_pred             -----cccccCCcchHHHhhcCCC
Confidence                 0011223478887776653

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.87  E-value=1.4e-22  Score=127.77  Aligned_cols=65  Identities=34%  Similarity=0.504  Sum_probs=60.9

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .|||+||||+++++.++||++|+++++++|||+++.     .+.|+.|++||++|+||.+|..||..+..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~   71 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGRE   71 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcc
Confidence            589999999999999999999999999999998865     57999999999999999999999998763

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.86  E-value=2e-24  Score=139.46  Aligned_cols=69  Identities=16%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhcccccC
Q 040915            6 RGSLYEVLRVEPTTMI--SEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRRR   74 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (104)
                      ..++|+||||+++++.  ++||+|||++++++|||+++..++|++|++||+||+||.+|..||.++.....
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~~w~~   77 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDA   77 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSCCCCC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhccccccc
Confidence            3589999999999998  99999999999999999999999999999999999999999999987764443

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.86  E-value=3.1e-22  Score=127.77  Aligned_cols=68  Identities=31%  Similarity=0.378  Sum_probs=63.0

Q ss_pred             CCccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            4 GTRGSLYEVLRVEPTT-MISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a-~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ....|||+||||++++ +.++||+||+++++++|||+++.       .+.|++|++||++|+||.+|..||..+..
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~   87 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDH   87 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccC
Confidence            4568999999999999 99999999999999999998764       67999999999999999999999998863

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.86  E-value=1.5e-22  Score=128.17  Aligned_cols=66  Identities=36%  Similarity=0.532  Sum_probs=61.8

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++++.++||++|+++++++|||+++.    .+.|++|++||++|+||.+|..||..+..
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTT
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhh
Confidence            4699999999999999999999999999999998763    67999999999999999999999998874

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.85  E-value=1.2e-21  Score=131.72  Aligned_cols=68  Identities=28%  Similarity=0.544  Sum_probs=62.0

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----------GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ....|||+||||+++++.++||+|||++++++|||+++.          .+.|+.|++||+||+||.+|..||..+.+
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~   84 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE   84 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence            346799999999999999999999999999999998754          37999999999999999999999987763

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.82  E-value=5.3e-22  Score=136.16  Aligned_cols=69  Identities=17%  Similarity=0.188  Sum_probs=60.5

Q ss_pred             ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhcccccC
Q 040915            6 RGSLYEVLRVEPTTM--ISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRRR   74 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~--~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (104)
                      ..++|+||||+++|+  .++||+|||++++++|||++++.++|++|++||++|+||.+|..||.++.....
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~~w~~   80 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWDA   80 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGGCC--
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCCcccc
Confidence            468999999999998  699999999999999999999999999999999999999999999999975443

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.82  E-value=1e-20  Score=130.97  Aligned_cols=65  Identities=34%  Similarity=0.483  Sum_probs=61.0

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .|||+||||+++++.++||+|||++++++|||+++.    .++|+.|++||++|+||.+|..||.++..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~   70 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEK   70 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTT
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Confidence            589999999999999999999999999999998753    67999999999999999999999998864

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=8.6e-21  Score=117.54  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=54.4

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCc---cHHHHHHHHHHHHHcCChhHHH
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSG---NGRDFIEIHKTYEMLSDPTARV   63 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~---~~~~f~~i~~Ay~~L~d~~~R~   63 (104)
                      ...|||+||||+++++.++||++||++++++|||+++   +.+.|++|++||++|+||.+|.
T Consensus        25 ~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           25 NSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             TCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             cCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence            3579999999999999999999999999999999984   4789999999999999998774

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.81  E-value=5.4e-21  Score=115.98  Aligned_cols=60  Identities=15%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHH
Q 040915            6 RGSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVY   65 (104)
Q Consensus         6 ~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~Y   65 (104)
                      ..++|+||||+++  ++.++||+|||++++++|||++++.+.|++|++||++|+++.+|..+
T Consensus        10 ~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A           10 KERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3579999999999  99999999999999999999999999999999999999999999873

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.80  E-value=2.7e-20  Score=127.34  Aligned_cols=66  Identities=18%  Similarity=0.307  Sum_probs=60.4

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            7 GSLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         7 ~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      +|||+||||++++  +..+||++||++++++|||+++.         .+.|+.|++||+||+||.+|..||..+.+.
T Consensus         1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g~   77 (171)
T 1fpo_A            1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHGF   77 (171)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTTC
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcCC
Confidence            4899999999999  99999999999999999998654         358999999999999999999999988753

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.78  E-value=1.7e-19  Score=126.65  Aligned_cols=67  Identities=16%  Similarity=0.347  Sum_probs=60.0

Q ss_pred             CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            5 TRGSLYEVLRVEPT--TMISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~--a~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ...|||+||||++.  ++..+||++||++++++|||+++.         .+.|+.|++||+||+||.+|..||..+.+
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~G  118 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLHG  118 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhcC
Confidence            46799999999986  789999999999999999998753         35799999999999999999999987664

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.77  E-value=1.7e-20  Score=139.42  Aligned_cols=65  Identities=34%  Similarity=0.561  Sum_probs=0.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ..|||+||||+++|+.++||+|||++++++|||+++.   .++|++|++||++|+||.+|..||.++.
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~   94 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQ   94 (329)
T ss_dssp             --------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhc
Confidence            4799999999999999999999999999999998754   6799999999999999999999999854

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.76  E-value=1.3e-19  Score=107.82  Aligned_cols=57  Identities=14%  Similarity=0.146  Sum_probs=53.0

Q ss_pred             ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHH
Q 040915            6 RGSLYEVLRVEP-TTMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTAR   62 (104)
Q Consensus         6 ~~d~Y~iLgv~~-~a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R   62 (104)
                      ..++|+||||++ +++.++||++||++++++|||++++.+.|++|++||++|+++..|
T Consensus        13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            358999999999 799999999999999999999998899999999999999987654

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.75  E-value=4.9e-19  Score=122.10  Aligned_cols=68  Identities=22%  Similarity=0.392  Sum_probs=61.1

Q ss_pred             CCccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCc-cHHHHHHHHHHHHHcCChhHHHHHhhhc-cc
Q 040915            4 GTRGSLYEVL------RVEP-TTMISEIKMAYQSLAKVYHLDLSG-NGRDFIEIHKTYEMLSDPTARVVYDMSL-VS   71 (104)
Q Consensus         4 ~~~~d~Y~iL------gv~~-~a~~~~Ik~ayr~l~~~~hPD~~~-~~~~f~~i~~Ay~~L~d~~~R~~YD~~~-~~   71 (104)
                      ....|||+||      |+++ +++..+||++||++++++|||+++ +.+.|+.|++||+||+||.+|..||..+ .+
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g   84 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRN   84 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHHHhC
Confidence            3457999999      4665 899999999999999999999987 5789999999999999999999999987 54

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.75  E-value=2.6e-19  Score=110.62  Aligned_cols=58  Identities=16%  Similarity=0.059  Sum_probs=53.1

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHH
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTAR   62 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R   62 (104)
                      ...++|+||||+++++.++||+|||++++++|||+++.     .+.|++|++||++|++...|
T Consensus        14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            34689999999999999999999999999999999875     57999999999999998666

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.73  E-value=5.8e-19  Score=121.78  Aligned_cols=60  Identities=13%  Similarity=0.267  Sum_probs=55.0

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHH
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVY   65 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Y   65 (104)
                      ..++|+||||++.++.++||+|||++++++|||+++.       .+.|+.|++||++|+|+.+|..|
T Consensus       116 ~~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          116 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             TCCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             ccchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            3699999999999999999999999999999998653       56999999999999999999766

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.72  E-value=1.8e-18  Score=110.14  Aligned_cols=55  Identities=11%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----------HHHHHHHHHHHHHcCChh
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----------GRDFIEIHKTYEMLSDPT   60 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----------~~~f~~i~~Ay~~L~d~~   60 (104)
                      ...|||+|||++. |+.++||+|||++++++|||+++.           .++|+.|++||++|+|+.
T Consensus        39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            4569999999996 999999999999999999998642           579999999999999985

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.69  E-value=3.7e-18  Score=106.23  Aligned_cols=52  Identities=12%  Similarity=0.206  Sum_probs=47.6

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCC
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSD   58 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d   58 (104)
                      .++|++|||++.++.++||+|||++++++|||++++       .+.|+.|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999998653       5689999999999964

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.68  E-value=3.4e-18  Score=136.84  Aligned_cols=67  Identities=33%  Similarity=0.460  Sum_probs=40.8

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ....|||+||||+++|+.++||+|||++++++|||+++.    .++|++|++||++|+||.+|..||.++.
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~   88 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGE   88 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC--
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcc
Confidence            446799999999999999999999999999999998753    6799999999999999999999999886

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.28  E-value=3.7e-12  Score=74.35  Aligned_cols=53  Identities=15%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             cCcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCCh
Q 040915            7 GSLYEVLRVEPT---TMISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDP   59 (104)
Q Consensus         7 ~d~Y~iLgv~~~---a~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~   59 (104)
                      ..-|.||||++.   ++.++|+++||+|...+|||+.+.......|++|.++|...
T Consensus         4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~~   59 (65)
T 2guz_B            4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKWE   59 (65)
T ss_dssp             HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            355889999999   99999999999999999999999999999999999998643

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.25  E-value=5.2e-12  Score=92.40  Aligned_cols=62  Identities=35%  Similarity=0.514  Sum_probs=52.7

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHHhh
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVYDM   67 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~YD~   67 (104)
                      ..++|.+||+.+.++.++|+++|+++++++|||+.+.       .+.|+.|.+||++|+||.+|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            3589999999999999999999999999999998764       4589999999999999999999996

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=94.31  E-value=0.036  Score=43.68  Aligned_cols=48  Identities=15%  Similarity=0.163  Sum_probs=37.4

Q ss_pred             CCccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH
Q 040915            4 GTRGSLYEVLRVEPTTMI--SEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEM   55 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~--~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~   55 (104)
                      ....+||.|||++.+...  ..|+++||++++..+++    .+++..|..|..|
T Consensus       626 ~~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v  675 (681)
T 2pzi_A          626 DNKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV  675 (681)
T ss_dssp             SCCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred             ccCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence            345679999999766544  66999999999976655    4788888888765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	104
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	2e-12
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	2e-10
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	2e-09
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	9e-09
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	1e-08
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	1e-08
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	9e-06
d1iura_	88	a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human	1e-04

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 55.8 bits (134), Expect = 2e-12
 Identities = 9/62 (14%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 8  SLYEVLRVEPTTMIS--EIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVY 65
           L E+L++          ++ AY+  + + H D  G+     E++  +         +  
Sbjct: 12 RLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM 71

Query: 66 DM 67
          ++
Sbjct: 72 NL 73

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (120), Expect = 2e-10
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 10/68 (14%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----------FIEIHKTYEMLSDP 59
          Y +L  +P+  +S++K  YQ L  +YH D                 FIEI + +++L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 60 TARVVYDM 67
            +  YD+
Sbjct: 79 ETKKKYDL 86

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (113), Expect = 2e-09
 Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 10 YEVLRVEPTTMIS--EIKMAYQSLAKVYHLDLSGNGRD---------FIEIHKTYEMLSD 58
          + +  +     +    + + +Q L + YH D   +G              I++ ++ L  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 59 PTARVVYDMSL 69
          P  R  Y +SL
Sbjct: 64 PLMRAEYLLSL 74

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.5 bits (110), Expect = 9e-09
 Identities = 8/65 (12%), Positives = 24/65 (36%), Gaps = 7/65 (10%)

Query: 8  SLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPT 60
          + ++ + +       ++K  Y+    V H D +            F+E++  +    +  
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 61 ARVVY 65
           + +Y
Sbjct: 94 QKPLY 98

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 46.7 bits (110), Expect = 1e-08
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 9  LYEVLRVEPTTMIS--EIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYD 66
          L ++L +E +   +   ++ AY    K +H D  G+     +++  Y+ + D        
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 45.8 bits (108), Expect = 1e-08
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRD----FIEIHKTYEMLSDPTARVV 64
           YE+L V  T    EI+ AY+ LA  YH D +   ++    F EI + YE+L+D   R  
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64

Query: 65 YDM 67
          YD 
Sbjct: 65 YDQ 67

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 9e-06
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 10 YEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDF---IEIHKTYEMLSDPTARVVYD 66
          Y+ L +       EIK AY+  A  YH D +          EI + Y++LSDP  R ++D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

Query: 67 M 67
           
Sbjct: 66 R 66

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 1e-04
 Identities = 11/71 (15%), Positives = 19/71 (26%), Gaps = 8/71 (11%)

Query: 9  LYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGNGRDFIE-----IHKTYEMLSDPTARV 63
          +  V+        SE K   + L   +H D +    D        +      L     + 
Sbjct: 18 VTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QA 74

Query: 64 VYDMSLVSRRR 74
            D +     R
Sbjct: 75 FLDQNADRASR 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	104
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.92
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.9
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.89
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.85
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.82
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.72
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.71
d2b7ea1	56	Pre-mRNA-processing protein PRP40 {Baker's yeast (	85.82

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.1e-25  Score=134.22  Aligned_cols=66  Identities=36%  Similarity=0.532  Sum_probs=61.5

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ..|||+||||+++||.++||+||+++++++|||+++.    .+.|+.|++||+||+||.+|..||.+|..
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~   71 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHA   71 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCcc
Confidence            5799999999999999999999999999999998764    56899999999999999999999998864

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-24  Score=129.23  Aligned_cols=65  Identities=32%  Similarity=0.457  Sum_probs=61.1

Q ss_pred             cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc---HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN---GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~---~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .|||+||||+++++.++|++||+++++++|||+...   .+.|+.|++||+||+||.+|..||+++..
T Consensus         3 kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~   70 (77)
T d1hdja_           3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEE   70 (77)
T ss_dssp             CCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGG
T ss_pred             CChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhh
Confidence            699999999999999999999999999999998765   67899999999999999999999998875

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=2.7e-24  Score=133.09  Aligned_cols=69  Identities=26%  Similarity=0.524  Sum_probs=62.5

Q ss_pred             CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc----------HHHHHHHHHHHHHcCChhHHHHHhhhcccc
Q 040915            4 GTRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN----------GRDFIEIHKTYEMLSDPTARVVYDMSLVSR   72 (104)
Q Consensus         4 ~~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~----------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   72 (104)
                      ....|||+||||+++++.++||++|+++++++|||+++.          .+.|+.|++||+||+||.+|..||....++
T Consensus        13 ~~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~~   91 (94)
T d1wjza_          13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSGP   91 (94)
T ss_dssp             SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCCS
T ss_pred             hhccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCCC
Confidence            346799999999999999999999999999999998654          457999999999999999999999987754

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.89  E-value=3.2e-25  Score=141.41  Aligned_cols=68  Identities=18%  Similarity=0.188  Sum_probs=62.9

Q ss_pred             ccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhccccc
Q 040915            6 RGSLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVSRR   73 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~   73 (104)
                      ..+||+||||+++|  +.++||+||++|++++|||++++.++|++|++||+||+||.+|..||..+....
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~~   76 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFWD   76 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSCCCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHHHhccCCCCc
Confidence            45899999999998  788999999999999999999999999999999999999999999998776543

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.85  E-value=3.5e-23  Score=124.33  Aligned_cols=67  Identities=13%  Similarity=0.238  Sum_probs=62.5

Q ss_pred             CccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            5 TRGSLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGNGRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      ...++|+||||++++  +.++||+||+++++++|||++++.++|++|++||++|+|+.+|..||..+.+
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~~~~~~   77 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGGTG   77 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCCSSCC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHccCCCC
Confidence            456899999999987  8999999999999999999999999999999999999999999999987654

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.8e-21  Score=114.32  Aligned_cols=65  Identities=18%  Similarity=0.329  Sum_probs=56.9

Q ss_pred             cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCcc---------HHHHHHHHHHHHHcCChhHHHHHhhhccc
Q 040915            7 GSLYEVLRVEPTT--MISEIKMAYQSLAKVYHLDLSGN---------GRDFIEIHKTYEMLSDPTARVVYDMSLVS   71 (104)
Q Consensus         7 ~d~Y~iLgv~~~a--~~~~Ik~ayr~l~~~~hPD~~~~---------~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~   71 (104)
                      .|||+||||++.+  +.++|+++|+++++++|||+...         ...|..|++||+||+||.+|..|+..+.|
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~g   76 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            4899999999864  58999999999999999997543         45789999999999999999999987653

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.4e-18  Score=105.92  Aligned_cols=63  Identities=16%  Similarity=0.087  Sum_probs=54.6

Q ss_pred             CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHcCChhHHHHHhhhcc
Q 040915            5 TRGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-----GRDFIEIHKTYEMLSDPTARVVYDMSLV   70 (104)
Q Consensus         5 ~~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-----~~~f~~i~~Ay~~L~d~~~R~~YD~~~~   70 (104)
                      ...++|+||||+++++.++||+||+++++++|||+++.     .+.|+.|++||++|++   +..||....
T Consensus        14 ~~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~~---~~~~d~~~~   81 (88)
T d1iura_          14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEK---QAFLDQNAD   81 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHH---HTTCSSSSS
T ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHH---HHHhhccch
Confidence            34699999999999999999999999999999999875     5689999999999964   556665554

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=4.4e-19  Score=110.10  Aligned_cols=60  Identities=13%  Similarity=0.267  Sum_probs=54.3

Q ss_pred             ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCcc-------HHHHHHHHHHHHHcCChhHHHHH
Q 040915            6 RGSLYEVLRVEPTTMISEIKMAYQSLAKVYHLDLSGN-------GRDFIEIHKTYEMLSDPTARVVY   65 (104)
Q Consensus         6 ~~d~Y~iLgv~~~a~~~~Ik~ayr~l~~~~hPD~~~~-------~~~f~~i~~Ay~~L~d~~~R~~Y   65 (104)
                      ..+.|++|||...++.++||+||+++++.+|||+++.       .+.|+.|++||++|+||.+|..|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            4578999999999999999999999999999996543       56899999999999999999776

>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Another 3-helical bundle
superfamily: FF domain
family: FF domain
domain: Pre-mRNA-processing protein PRP40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.82  E-value=1.2  Score=23.26  Aligned_cols=48  Identities=21%  Similarity=0.333  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcc-HHHHHHH---HHHHHHc-CCh-hHHHHHhhhcc
Q 040915           23 EIKMAYQSLAKVYHLDLSGN-GRDFIEI---HKTYEML-SDP-TARVVYDMSLV   70 (104)
Q Consensus        23 ~Ik~ayr~l~~~~hPD~~~~-~~~f~~i---~~Ay~~L-~d~-~~R~~YD~~~~   70 (104)
                      |.++||.++.+..+-+..-. ++.+..|   ..-|..| .+| .+++.|+.++.
T Consensus         1 Ea~~aF~~lL~e~~V~s~wtWeq~~~~i~~~DPrY~al~~~~~eRK~~Fe~Y~~   54 (56)
T d2b7ea1           1 EAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKYLS   54 (56)
T ss_dssp             HHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCCCCcHHHHHHHHhccCcchHhhcCChHHHHHHHHHHhh
Confidence            45789999999887665554 5555543   2688899 587 79999998764