Citrus Sinensis ID: 040932

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------
Protein Sequence
MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccEEEEEEcHcccHHHHHHHHHHHHHHcccccccccEccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mgirlpsmIHNAKQILKRHNnhalksadqvvprghIAVYVGEMERKRFVVPISYLNHPLFADLLNRAeeefgfnhpmggltipckedAFIDLTSRLH
Flexible Loop (DISEMBL)
MGIRLPSMIHNAKQILKRHNNhalksadqvvpRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNhpmggltipcKEDAFIDLTSRLH
Low Complexity Region (SEG)
MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH
Disordered region (IsUnstruct)
**********************ALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDL*****
Disordered Region (DISOPRED)
*GIR******************************HIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH
Disordered Region (DISEMBL)
MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH
Disordered Region (DISPRO)
*GIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	97	2.2.26 [Sep-21-2011]
P33080	92	Auxin-induced protein X10	no	no	0.927	0.978	0.536	7e-23
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.917	0.967	0.552	2e-22
P33081	82	Auxin-induced protein 15A	no	no	0.845	1.0	0.546	4e-22
P33079	93	Auxin-induced protein 10A	no	no	0.917	0.956	0.474	2e-20
P33083	90	Auxin-induced protein 6B	no	no	0.927	1.0	0.525	3e-20
P33082	82	Auxin-induced protein X15	no	no	0.845	1.0	0.494	3e-20

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score =  105 bits (263), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 70/97 (72%), Gaps = 7/97 (7%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MG RLP +    ++     N  + KS +  VP+G++ VYVG+  R RF++P+SYLN P F
Sbjct: 1  MGFRLPGI----RKTSIAANQASSKSVE--VPKGYLVVYVGDKMR-RFLIPVSYLNQPSF 53

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
           DLLN+AEEEFG++HPMGGLTIPCKED F+ +TS L+
Sbjct: 54 QDLLNQAEEEFGYDHPMGGLTIPCKEDEFLTVTSHLN 90

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 68/96 (70%), Gaps = 7/96 (7%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MG RLP +    ++ L   N  + K  D   P+G++AVYVGE   KRFV+P+S+LN PLF
Sbjct: 1  MGFRLPGI----RKTLSARNEASSKVLD--APKGYLAVYVGE-NMKRFVIPVSHLNQPLF 53

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96
           DLL++AEEEFG++HPMGGLTIPC ED F  +TS L
Sbjct: 54 QDLLSQAEEEFGYDHPMGGLTIPCSEDLFQHITSCL 89

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 15/97 (15%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MG RLP +              A K+AD   P+G++AVYVGE + KRFV+P+SYLN P F
Sbjct: 1  MGFRLPGI------------RKASKAAD--APKGYLAVYVGE-KLKRFVIPVSYLNQPSF 45

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
           DLL++AEEEFG++HPMGGLTIPC ED F  +TS L+
Sbjct: 46 QDLLSQAEEEFGYDHPMGGLTIPCSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/99 (47%), Positives = 71/99 (71%), Gaps = 10/99 (10%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVV--PRGHIAVYVGEMERKRFVVPISYLNHP 58
          MG R+         I++R + +  ++A + V  P+G+ AVYVG+  R RF +P+SYLN P
Sbjct: 1  MGFRIAG-------IVRRTSFYTTQAASKRVDVPKGYAAVYVGDKMR-RFTIPVSYLNEP 52

Query: 59 LFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
           F +LL++AEEEFG++HPMGGLTIPCKE+ F+++T+ L+
Sbjct: 53 SFQELLSQAEEEFGYDHPMGGLTIPCKEEEFLNVTAHLN 91

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 67/97 (69%), Gaps = 7/97 (7%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MG RLP +    ++     N  + K+ D  V +G++AVYVGE  R RFV+P+SYLN P F
Sbjct: 1  MGFRLPGI----RKASFSANQASSKAVD--VEKGYLAVYVGEKMR-RFVIPVSYLNKPSF 53

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
           DLL++AEEEFG++HP GGLTIPC ED F  +TS L+
Sbjct: 54 QDLLSQAEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 96.7 bits (239), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/97 (49%), Positives = 66/97 (68%), Gaps = 15/97 (15%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MG RLP +         R  ++A+ +     P+G++AVYVGE + KRFV+P+SY+N P F
Sbjct: 1  MGFRLPGI---------RKASNAVDA-----PKGYLAVYVGE-KMKRFVIPVSYMNQPSF 45

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
           DLL +AEEEFG++HPMGGLTIPC E+ F  +T  L+
Sbjct: 46 QDLLTQAEEEFGYDHPMGGLTIPCSEEVFQRITCCLN 82

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
449518495	97	PREDICTED: auxin-induced protein X10A-li	0.979	0.979	0.731	1e-34
449458554	206	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.979	0.461	0.731	1e-34
388522687	101	unknown [Lotus japonicus]	0.989	0.950	0.734	3e-34
449516373	199	PREDICTED: uncharacterized LOC101210944	0.979	0.477	0.711	4e-34
225427874	100	PREDICTED: auxin-induced protein X10A [V	0.979	0.95	0.742	5e-34
449458558	92	PREDICTED: auxin-induced protein X10A-li	0.927	0.978	0.721	9e-34
449458544	198	PREDICTED: uncharacterized protein LOC10	0.979	0.479	0.711	1e-33
225430947	97	PREDICTED: auxin-induced protein 15A [Vi	0.969	0.969	0.718	1e-33
356544931	92	PREDICTED: auxin-induced protein X10A-li	0.907	0.956	0.739	2e-33
449518493	97	PREDICTED: auxin-induced protein X10A-li	0.979	0.979	0.731	2e-33

>gi|449518495|ref|XP_004166277.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 82/97 (84%), Gaps = 2/97 (2%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MGIRLPS++ NAKQ+LK     A   +D  VP+GHIAVYVGE++RKRFVVPISYL HP F
Sbjct: 1  MGIRLPSILLNAKQVLKMQAMSARNQSD--VPKGHIAVYVGEIQRKRFVVPISYLKHPSF 58

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
           DLLNR+EEEFGF HPMGGLTIPC+EDAFI+LT+RLH
Sbjct: 59 VDLLNRSEEEFGFCHPMGGLTIPCREDAFINLTARLH 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458554|ref|XP_004147012.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101212166 [Cucumis sativus]

 Score =  150 bits (378), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 82/97 (84%), Gaps = 2/97 (2%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MGIRLPS++ NAKQ+LK     A   +D  VP+GHIAVYVGE++RKRFVVPISYL HP F
Sbjct: 1  MGIRLPSILLNAKQVLKMQAMSARNQSD--VPKGHIAVYVGEIQRKRFVVPISYLKHPSF 58

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
           DLLNR+EEEFGF HPMGGLTIPC+EDAFI+LT+RLH
Sbjct: 59 VDLLNRSEEEFGFCHPMGGLTIPCREDAFINLTARLH 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522687|gb|AFK49405.1| unknown [Lotus japonicus]

 Score =  149 bits (375), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/98 (73%), Positives = 83/98 (84%), Gaps = 2/98 (2%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQV--VPRGHIAVYVGEMERKRFVVPISYLNHP 58
          MGIRLP MI +AKQI K  + H L+S  +   VP+GH+AVYVGE+++KRFVVPISYLNHP
Sbjct: 1  MGIRLPFMIAHAKQIFKFTSQHHLQSGTKQSDVPKGHLAVYVGELQKKRFVVPISYLNHP 60

Query: 59 LFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96
           F  LLNRAEEEFGFNHPMGGLTIPCKEDAFI+LTS+L
Sbjct: 61 SFLALLNRAEEEFGFNHPMGGLTIPCKEDAFINLTSQL 98

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516373|ref|XP_004165221.1| PREDICTED: uncharacterized LOC101210944 [Cucumis sativus]

 Score =  148 bits (373), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 81/97 (83%), Gaps = 2/97 (2%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MGIR+PS++ NAKQI +  +      ++  +P+GHIAVYVGE+ERKRFVVP+SYLNHP F
Sbjct: 1  MGIRMPSLLLNAKQIFRMQSVSTRCHSN--IPKGHIAVYVGEIERKRFVVPVSYLNHPTF 58

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
            LLNRAEEEFGFNHP GGLTIPCKEDAFIDLTS+LH
Sbjct: 59 LSLLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSKLH 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225427874|ref|XP_002276412.1| PREDICTED: auxin-induced protein X10A [Vitis vinifera] gi|147804677|emb|CAN62605.1| hypothetical protein VITISV_016866 [Vitis vinifera]

 Score =  148 bits (373), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 81/97 (83%), Gaps = 2/97 (2%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MGIRLPS IHNAKQILK  +   L      VP+GH AVYVGE+++KRFVVPISYLNHP F
Sbjct: 1  MGIRLPSKIHNAKQILKLQS--LLSRNQSSVPKGHCAVYVGEIQKKRFVVPISYLNHPAF 58

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
           DLL+ AEEEFGF+HPMGGLTIPC+EDAFIDLTSRL+
Sbjct: 59 QDLLHLAEEEFGFDHPMGGLTIPCEEDAFIDLTSRLN 95

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458558|ref|XP_004147014.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus] gi|449518497|ref|XP_004166278.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  147 bits (371), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 81/97 (83%), Gaps = 7/97 (7%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MGIRLPS++ NAKQILK+H           VP+GHIAVYVG+++RKRF+VPISYLNHP F
Sbjct: 1  MGIRLPSLLLNAKQILKKHVQFD-------VPKGHIAVYVGDIQRKRFLVPISYLNHPTF 53

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
            LL RAEEEFG+NHPMGGLTIPC+EDAF+DLTSRLH
Sbjct: 54 MALLKRAEEEFGYNHPMGGLTIPCREDAFMDLTSRLH 90

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458544|ref|XP_004147007.1| PREDICTED: uncharacterized protein LOC101210944 [Cucumis sativus]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 81/97 (83%), Gaps = 2/97 (2%)

Query: 1   MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
           MGIR+PS++ NAKQI +  +      ++  +P+GHIAVYVGE+ERKRFVVP+SYLNHP F
Sbjct: 102 MGIRMPSLLLNAKQIFRTQSISTRCHSN--IPKGHIAVYVGEIERKRFVVPVSYLNHPTF 159

Query: 61  ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
             LLNRAEEEFGFNHP GGLTIPCKEDAFIDLTS+LH
Sbjct: 160 LSLLNRAEEEFGFNHPSGGLTIPCKEDAFIDLTSKLH 196

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430947|ref|XP_002271427.1| PREDICTED: auxin-induced protein 15A [Vitis vinifera]

 Score =  146 bits (369), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/96 (71%), Positives = 79/96 (82%), Gaps = 2/96 (2%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MGIRLPS+I NAKQILK  + H    +D  VP+GH AVYVGE+++KRFVVPISYLNHP F
Sbjct: 1  MGIRLPSVISNAKQILKLQSVHIRSQSD--VPKGHFAVYVGEIQKKRFVVPISYLNHPSF 58

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96
           DLL +AEEEFGFNH MGGLTIPCKE+ FIDL S+L
Sbjct: 59 QDLLQQAEEEFGFNHSMGGLTIPCKEETFIDLASQL 94

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544931|ref|XP_003540900.1| PREDICTED: auxin-induced protein X10A-like [Glycine max]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/96 (73%), Positives = 81/96 (84%), Gaps = 8/96 (8%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MGIRLP M+H AKQ      + + KS    VP+GH+AVYVGE+++KRFVVPISYLNHPLF
Sbjct: 2  MGIRLPFMVHAAKQ-----TSSSFKSN---VPKGHVAVYVGELQKKRFVVPISYLNHPLF 53

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96
           DLLNRAEEEFGFNHPMGGLTIPCKEDAFI+LTS+L
Sbjct: 54 LDLLNRAEEEFGFNHPMGGLTIPCKEDAFINLTSQL 89

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518493|ref|XP_004166276.1| PREDICTED: auxin-induced protein X10A-like [Cucumis sativus]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 80/97 (82%), Gaps = 2/97 (2%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLF 60
          MGIRLPS++ NAKQILK     A    D  VP+GHIAVYVGE++RKRFVVPISYL HP F
Sbjct: 1  MGIRLPSILLNAKQILKMQAMSARNQFD--VPKGHIAVYVGEIQRKRFVVPISYLKHPSF 58

Query: 61 ADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
           DLLNR+EEEFGF HP GGLTIPC+EDAFI+LT+RLH
Sbjct: 59 VDLLNRSEEEFGFCHPRGGLTIPCREDAFINLTARLH 95

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	97
TAIR|locus:2141772	99	AT4G38840 "AT4G38840" [Arabido	1.0	0.979	0.565	2.5e-26
TAIR|locus:2116895	105	AT4G34810 "AT4G34810" [Arabido	0.989	0.914	0.586	4e-26
TAIR|locus:2047007	98	AT2G21210 "AT2G21210" [Arabido	0.958	0.948	0.577	8.4e-26
TAIR|locus:2116875	108	AT4G34790 "AT4G34790" [Arabido	0.989	0.888	0.587	4.6e-25
TAIR|locus:2116860	104	AT4G34770 [Arabidopsis thalian	0.979	0.913	0.598	1.1e-23
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.845	0.872	0.617	2.3e-23
TAIR|locus:2161518	90	SAUR23 "AT5G18060" [Arabidopsi	0.835	0.9	0.616	4.8e-23
TAIR|locus:2172299	90	SAUR24 "AT5G18080" [Arabidopsi	0.824	0.888	0.588	1.6e-22
TAIR|locus:2161543	91	SAUR20 "AT5G18020" [Arabidopsi	0.814	0.868	0.619	3.4e-22
TAIR|locus:2161573	90	SAUR22 "AT5G18050" [Arabidopsi	0.824	0.888	0.588	4.3e-22

TAIR|locus:2141772 AT4G38840 "AT4G38840" [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 56/99 (56%), Positives = 75/99 (75%)

Query:     1 MGIRLPSMIHNAKQILKRHN--NHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHP 58
             M IR+P ++ ++KQIL++    + +  S+   VP+G++AVYVGE   KRFVVP+SYL+ P
Sbjct:     1 MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query:    59 LFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH 97
              F DLL +AEEEFGF+HPMGGLTIPC E+ FIDL SR +
Sbjct:    61 SFQDLLRKAEEEFGFDHPMGGLTIPCSEEIFIDLASRFN 99

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=RCA

TAIR|locus:2116895 AT4G34810 "AT4G34810" [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 4.0e-26, P = 4.0e-26
 Identities = 61/104 (58%), Positives = 77/104 (74%)

Query:     1 MGIRLPSMIHNAKQILKRHN----NHALKSADQVVPRGHIAVYVGE---MERKRFVVPIS 53
             MG+   ++ +  KQILK ++    N    S+   VP+GH+AVYVGE   ME+KRFVVPIS
Sbjct:     1 MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query:    54 YLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDL-TSRL 96
             +LNHP F + L+RAEEEFGFNHPMGGLTIPC+E+ F+DL  SRL
Sbjct:    61 FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRL 104

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047007 AT2G21210 "AT2G21210" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 56/97 (57%), Positives = 76/97 (78%)

Query:     1 MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGEM-ERKRFVVPISYLNHPL 59
             M IR+  ++ ++KQ+LK  + H+  S +  +P+GH+AVYVGEM +++RFVVP++YL+HP 
Sbjct:     1 MAIRISRVLQSSKQLLKSLS-HS--SNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPC 57

Query:    60 FADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96
             F  LL +AEEEFGF+HPMGGLTIPC E  FIDL SRL
Sbjct:    58 FQKLLRKAEEEFGFDHPMGGLTIPCTEQIFIDLASRL 94

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

TAIR|locus:2116875 AT4G34790 "AT4G34790" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 64/109 (58%), Positives = 81/109 (74%)

Query:     1 MGIRLPSMIHNAKQILK----RHNNHALK-----SADQVVPRGHIAVYVGE-MERKRFVV 50
             MG+ + SM+ NAKQI K    R+ N +       +   +VP+GH+AVYVGE ME+KRFVV
Sbjct:     1 MGL-MRSMLPNAKQIFKSQSMRNKNGSSSPSTTTTTSGLVPKGHVAVYVGEQMEKKRFVV 59

Query:    51 PISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDL-TS-RLH 97
             PISYLNHPLF + LNRAEEE GF+H MGGLTIPC+E++F+ L TS +LH
Sbjct:    60 PISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLYLITSHQLH 108

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116860 AT4G34770 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 61/102 (59%), Positives = 70/102 (68%)

Query:     1 MGIRLPSMIHNAKQILKRHNNHALKS-----ADQVVPRGHIAVYVGEM-ERKRFVVPISY 54
             MGI+L  +   AKQ L+R  +  + S         VP+GH+AVYVGE   RKRFV+PISY
Sbjct:     1 MGIQLIGL-SQAKQKLQRSLSARIASLLATSGTNNVPKGHVAVYVGETYHRKRFVIPISY 59

Query:    55 LNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96
             LNHPLF  LLN AEEEFGF+HPMGGLTIPC ED F  L S L
Sbjct:    60 LNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYFTALASIL 101

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 58/94 (61%), Positives = 70/94 (74%)

Query:     1 MGIRLPSMIHNAKQILKRHNNHALKSADQVVPRGHIAVYVGE-ME-RKRFVVPISYLNHP 58
             M IRL  +I N+KQ  K+ +          VP+GH+AVYVGE ME +KRFVVPISYLNHP
Sbjct:     1 MAIRLSRVI-NSKQSQKQQSR---------VPKGHVAVYVGEEMESKKRFVVPISYLNHP 50

Query:    59 LFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDL 92
              F  LL+RAEEEFGFNHP+GGLTIPC+E+ F+ L
Sbjct:    51 SFQGLLSRAEEEFGFNHPIGGLTIPCREETFVGL 84

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161518 SAUR23 "AT5G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 53/86 (61%), Positives = 68/86 (79%)

Query:    12 AKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEF 71
             AK+IL R  + A  SA    P+G +AVYVGE ++KR++VP+SYLN P F  LL+++EEEF
Sbjct:    10 AKKILSR--SAAAVSAP---PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEEEF 64

Query:    72 GFNHPMGGLTIPCKEDAFIDLTSRLH 97
             GF+HPMGGLTIPC ED FI++TSRLH
Sbjct:    65 GFDHPMGGLTIPCPEDTFINVTSRLH 90

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2172299 SAUR24 "AT5G18080" [Arabidopsis thaliana (taxid:3702)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 50/85 (58%), Positives = 64/85 (75%)

Query:    12 AKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEF 71
             AK+IL R        A    P+G +AVYVGE ++KR++VP+SYLN P F  LL+++EEEF
Sbjct:    10 AKKILSRSTG-----AGSAAPKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEF 64

Query:    72 GFNHPMGGLTIPCKEDAFIDLTSRL 96
             GF+HPMGGLTIPC ED FI++TSRL
Sbjct:    65 GFDHPMGGLTIPCPEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161543 SAUR20 "AT5G18020" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 52/84 (61%), Positives = 65/84 (77%)

Query:    12 AKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEF 71
             AK+IL R    A  SA    P+G +AVYVGE ++KR++VPISYLN P F  LL+++EEEF
Sbjct:    10 AKKILSRSTTAA--SA---APKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEF 64

Query:    72 GFNHPMGGLTIPCKEDAFIDLTSR 95
             GF+HPMGGLTIPC ED FI++TSR
Sbjct:    65 GFDHPMGGLTIPCPEDTFINVTSR 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2161573 SAUR22 "AT5G18050" [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 50/85 (58%), Positives = 68/85 (80%)

Query:    12 AKQILKRHNNHALKSADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEF 71
             AK+IL R +  A+ +A    P+G +AVYVGE ++KR++VP+SYLN P F  LL+++E+EF
Sbjct:    10 AKKILSR-STAAVSAA----PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEF 64

Query:    72 GFNHPMGGLTIPCKEDAFIDLTSRL 96
             GF+HPMGGLTIPC ED FI++TSRL
Sbjct:    65 GFDHPMGGLTIPCHEDTFINVTSRL 89

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P32295	ARG7_VIGRR	No assigned EC number	0.5520	0.9175	0.9673	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	97
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	1e-39
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	4e-35
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-32
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	2e-30

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  126 bits (319), Expect = 1e-39
 Identities = 53/100 (53%), Positives = 61/100 (61%), Gaps = 6/100 (6%)

Query: 1  MGIRLPSMIHNAKQILKRHNNHAL----KSADQVVPRGHIAVYVGEMERKRFVVPISYLN 56
          M  RL       K IL   +  +     KS+   VP+GH AVYVGE E +RFVVPISYLN
Sbjct: 1  MASRLKKASSAKKWILSAASGRSRGSSSKSSSADVPKGHFAVYVGE-ETRRFVVPISYLN 59

Query: 57 HPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96
          HPLF +LL+RAEEEFGF+   GGLTIPC    F  L   L
Sbjct: 60 HPLFQELLDRAEEEFGFDQ-DGGLTIPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score =  115 bits (288), Expect = 4e-35
 Identities = 62/105 (59%), Positives = 78/105 (74%), Gaps = 8/105 (7%)

Query: 1   MGIRLPSMIHNAKQILKRHN----NHALKSADQVVPRGHIAVYVGE---MERKRFVVPIS 53
           MG+   ++ +  KQILK ++    N    S+   VP+GH+AVYVGE   ME+KRFVVPIS
Sbjct: 1   MGLSRFAISNATKQILKLNSLANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPIS 60

Query: 54  YLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDL-TSRLH 97
           +LNHP F + L+RAEEEFGFNHPMGGLTIPC+E+ F+DL  SRLH
Sbjct: 61  FLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIASRLH 105

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score =  109 bits (273), Expect = 1e-32
 Identities = 60/104 (57%), Positives = 77/104 (74%), Gaps = 11/104 (10%)

Query: 1   MGIRLPSMIHNAKQILK----RHNNHA-----LKSADQVVPRGHIAVYVGE-MERKRFVV 50
           MG+ + SM+ NAKQI K    R+ N +       +   +VP+GH+AVYVGE ME+KRFVV
Sbjct: 1   MGL-MRSMLPNAKQIFKSQSMRNKNGSSSPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVV 59

Query: 51  PISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTS 94
           PISYLNHPLF + LNRAEEE GF+H MGGLTIPC+E++F+ L +
Sbjct: 60  PISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLIT 103

Length = 108

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score =  103 bits (258), Expect = 2e-30
 Identities = 49/90 (54%), Positives = 60/90 (66%), Gaps = 8/90 (8%)

Query: 13  KQILKRHNNHALKSA-DQV-----VPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNR 66
           KQILKR ++   K   D+      VP+GH  VYVGE  R R++VPIS+L HP F  LL +
Sbjct: 16  KQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQ 74

Query: 67  AEEEFGFNHPMGGLTIPCKEDAFIDLTSRL 96
           AEEEFGF+H M GLTIPC+E  F  LTS +
Sbjct: 75  AEEEFGFDHDM-GLTIPCEEVVFRSLTSMI 103

Length = 104

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	97
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03219	108	uncharacterized protein; Provisional	100.0
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	86.69
PF02100	108	ODC_AZ: Ornithine decarboxylase antizyme; InterPro	85.78
PRK02899	197	adaptor protein; Provisional	82.1

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=4.3e-41  Score=231.94  Aligned_cols=95  Identities=52%  Similarity=0.848  Sum_probs=86.1

Q ss_pred             CccccccchH---HHHHHHHhhhhcccCC------CCcCCCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhc
Q 040932            1 MGIRLPSMIH---NAKQILKRHNNHALKS------ADQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEF   71 (97)
Q Consensus         1 m~~~~~~~~~---~~k~~l~r~~s~~~~~------~~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEf   71 (97)
                      |||+..+++.   .+||+|+||.|.++++      .+.+||+||||||||+ +++||+||++|||||.|++||++|||||
T Consensus         1 m~~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~-~~~RfvVp~~~L~hP~F~~LL~~aeeEf   79 (104)
T PLN03090          1 MAIKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGE-NRSRYIVPISFLTHPEFQSLLQQAEEEF   79 (104)
T ss_pred             CCcccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECC-CCEEEEEEHHHcCCHHHHHHHHHHHHHh
Confidence            8888777432   7799999999987643      4568999999999998 8999999999999999999999999999


Q ss_pred             CCccCCCceeeeccHHHHHHHHhhcC
Q 040932           72 GFNHPMGGLTIPCKEDAFIDLTSRLH   97 (97)
Q Consensus        72 G~~~~~G~L~IPC~~~~F~~vl~~l~   97 (97)
                      ||+|+ |+|+|||+++.|++++|+|+
T Consensus        80 Gf~~~-G~L~IPC~~~~Fe~ll~~i~  104 (104)
T PLN03090         80 GFDHD-MGLTIPCEEVVFRSLTSMIR  104 (104)
T ss_pred             CCCCC-CcEEEeCCHHHHHHHHHHhC
Confidence            99998 89999999999999999984

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=9.4e-40  Score=225.48  Aligned_cols=94  Identities=61%  Similarity=1.075  Sum_probs=84.7

Q ss_pred             CccccccchHHHHHHHHhhhhcccCC-----CCcCCCCCeEEEEeec---CcceEEEEeccccCchHHHHHHHHHHHhcC
Q 040932            1 MGIRLPSMIHNAKQILKRHNNHALKS-----ADQVVPRGHIAVYVGE---MERKRFVVPISYLNHPLFADLLNRAEEEFG   72 (97)
Q Consensus         1 m~~~~~~~~~~~k~~l~r~~s~~~~~-----~~~~vpkG~~~VyVG~---~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG   72 (97)
                      ||+++++|..+.||+|+|++ .+++.     .+.+|||||||||||+   ++++||+||++|||||.|++||++||||||
T Consensus         1 ~~~~~~~~~~~~k~~~~~~~-~~~~~~~~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfG   79 (105)
T PLN03220          1 MGLSRFAISNATKQILKLNS-LANRNRTSSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFG   79 (105)
T ss_pred             CCcchhhhHHHHHHHHHHHh-hcccccccccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhC
Confidence            89999999988899999998 44433     5679999999999997   258999999999999999999999999999


Q ss_pred             CccCCCceeeeccHHHHHHHHhh
Q 040932           73 FNHPMGGLTIPCKEDAFIDLTSR   95 (97)
Q Consensus        73 ~~~~~G~L~IPC~~~~F~~vl~~   95 (97)
                      |+|++|+|+|||+++.|+++++.
T Consensus        80 f~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         80 FNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             CCCCCCCEEeeCCHHHHHHHHHh
Confidence            99966999999999999999864

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=3.5e-36  Score=205.23  Aligned_cols=68  Identities=63%  Similarity=1.086  Sum_probs=65.3

Q ss_pred             CcCCCCCeEEEEeecCcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhhcC
Q 040932           28 DQVVPRGHIAVYVGEMERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRLH   97 (97)
Q Consensus        28 ~~~vpkG~~~VyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l~   97 (97)
                      ..++|+||||||||+ +++||+||++|||||.|++||++|||||||+++ |+|+|||+++.|++++|+|.
T Consensus        33 ~~~vp~G~~~VyVG~-~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~-G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGE-ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQD-GPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             cCCCCCCeEEEEeCc-cceEEEechHHcCchhHHHHHHHHhhhcCcCCC-CcEEeeCCHHHHHHHHHHhC
Confidence            378999999999998 999999999999999999999999999999997 99999999999999999974

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03219 uncharacterized protein; Provisional

Probab=100.00  E-value=3.4e-35  Score=203.67  Aligned_cols=69  Identities=70%  Similarity=1.288  Sum_probs=64.4

Q ss_pred             CCcCCCCCeEEEEeec-CcceEEEEeccccCchHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhh
Q 040932           27 ADQVVPRGHIAVYVGE-MERKRFVVPISYLNHPLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSR   95 (97)
Q Consensus        27 ~~~~vpkG~~~VyVG~-~~~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~   95 (97)
                      .+.+|||||||||||+ ++++||+||++|||||.|++||++|||||||+|++|+|+|||+++.|+++|++
T Consensus        35 ~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~  104 (108)
T PLN03219         35 TSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITS  104 (108)
T ss_pred             CCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHh
Confidence            3468999999999998 46999999999999999999999999999999866999999999999999975

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=86.69  E-value=0.71  Score=29.54  Aligned_cols=56  Identities=23%  Similarity=0.294  Sum_probs=40.7

Q ss_pred             EEEeecCcceEEEEeccccC-ch--HHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhhc
Q 040932           37 AVYVGEMERKRFVVPISYLN-HP--LFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL   96 (97)
Q Consensus        37 ~VyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l   96 (97)
                      .+=||.   ++|.++.+.|. +|  .|..+++...... .+.+.|.+-|-++...|++|+..|
T Consensus         2 ~lNVGG---~~f~~~~~tL~~~~~s~l~~~~~~~~~~~-~~~~~~~~fiDRdp~~F~~IL~yl   60 (94)
T PF02214_consen    2 RLNVGG---TIFETSRSTLTRYPDSLLARLFSGERSDD-YDDDDGEYFIDRDPELFEYILNYL   60 (94)
T ss_dssp             EEEETT---EEEEEEHHHHHTSTTSTTTSHHHTGHGGG-EETTTTEEEESS-HHHHHHHHHHH
T ss_pred             EEEECC---EEEEEcHHHHhhCCCChhhhHHhhccccc-cCCccceEEeccChhhhhHHHHHH
Confidence            345775   89999999887 54  6888888652222 222348999999999999999765

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis

Probab=85.78  E-value=1.1  Score=30.66  Aligned_cols=51  Identities=31%  Similarity=0.397  Sum_probs=27.8

Q ss_pred             cceEEE-EeccccCc---hHHHHHHHHHHHhcCCccCCCceeeeccHHHHHHHHhhc
Q 040932           44 ERKRFV-VPISYLNH---PLFADLLNRAEEEFGFNHPMGGLTIPCKEDAFIDLTSRL   96 (97)
Q Consensus        44 ~~~Rfv-Vp~~~L~h---P~F~~LL~~aeEEfG~~~~~G~L~IPC~~~~F~~vl~~l   96 (97)
                      ++.=|| +|-..+.+   ..|.+||+.|||.+|.++  -.++++=+-.....++..|
T Consensus        23 ~~~L~V~ip~~~~~~~~K~~lvaLLElAee~L~c~~--vvic~~k~~~d~~~Llr~l   77 (108)
T PF02100_consen   23 ERTLFVFIPSSALGQGSKESLVALLELAEEKLGCSH--VVICLDKNRPDRASLLRTL   77 (108)
T ss_dssp             TTEEEEE-SS---SS--SHHHHHHHHHHHHHH------EEEEE---SS-HHHHHHHH
T ss_pred             CCEEEEEECCcccccccHHHHHHHHHHhcCcCCCCE--EEEEEECCchhHHHhhhhc
Confidence            566777 56555444   459999999999999886  4777776655555555443

ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.

>PRK02899 adaptor protein; Provisional

Probab=82.10  E-value=1.3  Score=33.25  Aligned_cols=23  Identities=35%  Similarity=0.817  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHhcCCccCCCceee
Q 040932           59 LFADLLNRAEEEFGFNHPMGGLTI   82 (97)
Q Consensus        59 ~F~~LL~~aeEEfG~~~~~G~L~I   82 (97)
                      .|.++|++|..|+||.-+ |||+|
T Consensus        40 lF~~mm~Ea~~e~~F~~~-~pl~~   62 (197)
T PRK02899         40 LFRDMMQEANKELGFEAD-GPIAV   62 (197)
T ss_pred             HHHHHHHHhhhccCcccC-CeEEE
Confidence            477779999999999987 89986

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00