Citrus Sinensis ID: 040965
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SY75 | 467 | Putative pentatricopeptid | yes | no | 0.990 | 0.659 | 0.545 | 2e-94 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.977 | 0.490 | 0.433 | 1e-70 | |
| Q9SX45 | 596 | Pentatricopeptide repeat- | no | no | 0.980 | 0.511 | 0.425 | 2e-68 | |
| Q9FIF7 | 544 | Putative pentatricopeptid | no | no | 0.977 | 0.558 | 0.434 | 4e-67 | |
| Q9LSB8 | 687 | Putative pentatricopeptid | no | no | 0.980 | 0.443 | 0.396 | 2e-66 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.980 | 0.390 | 0.406 | 2e-65 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 0.980 | 0.490 | 0.396 | 2e-64 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.980 | 0.472 | 0.412 | 4e-64 | |
| Q9FNN7 | 511 | Pentatricopeptide repeat- | no | no | 0.974 | 0.592 | 0.399 | 8e-64 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.967 | 0.505 | 0.397 | 9e-64 |
| >sp|Q9SY75|PPR30_ARATH Putative pentatricopeptide repeat-containing protein At1g10330 OS=Arabidopsis thaliana GN=PCMP-E71 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/310 (54%), Positives = 233/310 (75%), Gaps = 2/310 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN-LV 59
++D +NG+MD A F+ M DVVSWT++INGF + G +A+ VF M+ N ++
Sbjct: 158 LLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVI 217
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNEAT+VSVLSSCA ++GG+ LGKQ+HGY++ EI+L+ +GTAL+D+YGK G LE
Sbjct: 218 TPNEATFVSVLSSCANF-DQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEM 276
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+ +F + K VC WNA+IS+LASN R K+AL MF+ MK + N IT +A+LTACAR
Sbjct: 277 ALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACAR 336
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++LV+LG++LF S+ +++++P EHYGCVVDL+GRAGLL +A F++S+PFEPDASVLG
Sbjct: 337 SKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDASVLG 396
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACKIH +L + VG++L+ LQP+HCG+YV LS +A W+ A +RKAM+EAG
Sbjct: 397 ALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAG 456
Query: 300 IRKIPAYSLI 309
IRKIPAYS++
Sbjct: 457 IRKIPAYSVL 466
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (681), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 134/309 (43%), Positives = 197/309 (63%), Gaps = 5/309 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYVK G MD A+ LF M +++ +SWT++I+G+V+ EA+ +F M + V
Sbjct: 187 VIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD--VE 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + + LS+CA L G L GK +H Y+ + I + +G LID+Y K G +E A
Sbjct: 245 PDNVSLANALSACAQL---GALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 301
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK++ K V W A+IS A + +EA+ F EM++ G++ N ITF AVLTAC+
Sbjct: 302 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 361
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +F+SM + + P +EHYGC+VDLLGRAGLL EAK F++ MP +P+A + GA
Sbjct: 362 GLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGA 421
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH ++L E+G L+ + P H GRYV +NIHA ++W++A + R+ M E G+
Sbjct: 422 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481
Query: 301 RKIPAYSLI 309
K+P S I
Sbjct: 482 AKVPGCSTI 490
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/310 (42%), Positives = 193/310 (62%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D A +F+ M R+VV+WT++I G+V++ CF + + VF+ M+ + V
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD--VA 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVLS+CA + G L+ G++VH Y+++N I ++ GT LIDLY K GCLE A
Sbjct: 304 PNEKTLSSVLSACAHV---GALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + K+V TW AMI+ A++ ++A +F M + NE+TF+AVL+ACA
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF SM G+F + P +HY C+VDL GR GLL EAK + MP EP V GA
Sbjct: 421 GLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGA 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L G+C +H +L R+++LQP H GRY +L+N+++ + W+ +RK M + +
Sbjct: 481 LFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQV 540
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 541 VKSPGFSWIE 550
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIF7|PP435_ARATH Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 201/311 (64%), Gaps = 7/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM-MGNVNLV 59
MI+ Y + G + A+ LF+++ +D V WT++I+G VRN +A+ +F+ M M NV+
Sbjct: 195 MINCYSECGFIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVS-- 252
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
NE T V VLS+C+ L G L LG+ VH ++ + LS F+G ALI++Y + G +
Sbjct: 253 -ANEFTAVCVLSACSDL---GALELGRWVHSFVENQRMELSNFVGNALINMYSRCGDINE 308
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A RVF+ M KDV ++N MIS LA + EA+ F +M +G R N++T VA+L AC+
Sbjct: 309 ARRVFRVMRDKDVISYNTMISGLAMHGASVEAINEFRDMVNRGFRPNQVTLVALLNACSH 368
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
L+++GLE+F+SM F V P +EHYGC+VDLLGR G L EA F+ ++P EPD +LG
Sbjct: 369 GGLLDIGLEVFNSMKRVFNVEPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLG 428
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LL ACKIHG ++L ++ +RL E + G YV+LSN++A +W +T++R++M ++G
Sbjct: 429 TLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSG 488
Query: 300 IRKIPAYSLIE 310
I K P S IE
Sbjct: 489 IEKEPGCSTIE 499
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G++ A F+ M RD +SWT +I+G++R GCF E++ +F+ M +
Sbjct: 308 IVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMI-- 365
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL++CA L G L +G+ + YI +N+I V +G ALID+Y K GC E+A
Sbjct: 366 PDEFTMVSVLTACAHL---GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKA 422
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D TW AM+ LA+N + +EA+ +F +M++ ++ ++IT++ VL+AC +
Sbjct: 423 QKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHS 482
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ + F M + P + HYGC+VD+LGRAGL+ EA E +R MP P++ V GA
Sbjct: 483 GMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGA 542
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++H + +++LEL+P + Y +L NI+AG +RW ++R+ +V+ I
Sbjct: 543 LLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAI 602
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 603 KKTPGFSLIE 612
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (635), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 126/310 (40%), Positives = 192/310 (61%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G + A LF+ M KRD VSW ++I G+ ++G EA+ +F M R
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG--R 406
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +++ S LS+CA +V L LGKQ+HG +++ F+G AL+ +Y K G +E A
Sbjct: 407 LNRSSFSSALSTCADVV---ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 463
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+FK M KD+ +WN MI+ + + + AL F+ MK +GL+ ++ T VAVL+AC+
Sbjct: 464 NDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHT 523
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F++M + V+P +HY C+VDLLGRAGLL +A M++MPFEPDA++ G
Sbjct: 524 GLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGT 583
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++HG +L ++ ++P++ G YV+LSN++A RW LR M + G+
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643
Query: 301 RKIPAYSLIE 310
+K+P YS IE
Sbjct: 644 KKVPGYSWIE 653
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 201/310 (64%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G +++A +F+ M R++ +W+ +ING+ +N CF +AI +F+ M V
Sbjct: 189 MVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM--KREGVV 246
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE VSV+SSCA L G L G++ + Y++++ + +++ +GTAL+D++ + G +E+A
Sbjct: 247 ANETVMVSVISSCAHL---GALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKA 303
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + D +W+++I LA + +A+ F +M G ++TF AVL+AC+
Sbjct: 304 IHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHG 363
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GLE++ +M + P +EHYGC+VD+LGRAG L+EA+ F+ M +P+A +LGA
Sbjct: 364 GLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGA 423
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKI+ ++ VG L++++P+H G YV+LSNI+A +W++ LR M E +
Sbjct: 424 LLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLV 483
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 484 KKPPGWSLIE 493
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (624), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 128/310 (41%), Positives = 198/310 (63%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MIDGY++ GD +A +LF+ M +R VVSW ++I+G+ NG F +A+ VF+ M +R
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREM--KKGDIR 271
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL + + L G L LG+ +H Y + I + +G+ALID+Y K G +E+A
Sbjct: 272 PNYVTLVSVLPAISRL---GSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + ++V TW+AMI+ A + + +A+ F +M++ G+R +++ ++ +LTAC+
Sbjct: 329 IHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G F M+ + P +EHYGC+VDLLGR+GLL EA+EF+ +MP +PD + A
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGAC++ G V++ V L+++ P G YV LSN++A W+ +++R M E I
Sbjct: 449 LLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDI 508
Query: 301 RKIPAYSLIE 310
RK P SLI+
Sbjct: 509 RKDPGCSLID 518
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (622), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 123/308 (39%), Positives = 196/308 (63%), Gaps = 5/308 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GDM +A+ LF++M +++V SWT++I+GF +NG + EA+ +F M + + V+
Sbjct: 154 MITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKS-VK 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L G L +G+++ GY N ++++ A I++Y K G ++ A
Sbjct: 213 PNHITVVSVLPACANL---GELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVA 269
Query: 121 IRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F+ + +++C+WN+MI SLA++ + EAL +F +M +G + + +TFV +L AC
Sbjct: 270 KRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 329
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V G ELF SM ++ P +EHYGC++DLLGR G L EA + +++MP +PDA V G
Sbjct: 330 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWG 389
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG V++ L +L+P + G V++SNI+A E+W+ +RK M +
Sbjct: 390 TLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKET 449
Query: 300 IRKIPAYS 307
+ K YS
Sbjct: 450 MTKAAGYS 457
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 243 bits (621), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 122/307 (39%), Positives = 194/307 (63%), Gaps = 6/307 (1%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ SA +F+ M ++D+V+W S+INGF NG EA+ ++ M N ++P+
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGF 223
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LS+CA + G L LGK+VH Y+++ + ++ L+DLY + G +E A +F
Sbjct: 224 TIVSLLSACAKI---GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACARAQLV 183
MV K+ +W ++I LA N KEA+ +F M+ +GL EITFV +L AC+ +V
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 340
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G E F M ++++ P +EH+GC+VDLL RAG + +A E+++SMP +P+ + LLG
Sbjct: 341 KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG 400
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC +HG DL ++L+L+P H G YV+LSN++A +RW+ +RK M+ G++K+
Sbjct: 401 ACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKV 460
Query: 304 PAYSLIE 310
P +SL+E
Sbjct: 461 PGHSLVE 467
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| 255567729 | 524 | pentatricopeptide repeat-containing prot | 0.993 | 0.589 | 0.693 | 1e-123 | |
| 224115616 | 474 | predicted protein [Populus trichocarpa] | 0.993 | 0.651 | 0.683 | 1e-122 | |
| 359485621 | 454 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.996 | 0.682 | 0.678 | 1e-119 | |
| 359485617 | 531 | PREDICTED: putative pentatricopeptide re | 1.0 | 0.585 | 0.676 | 1e-119 | |
| 147809483 | 480 | hypothetical protein VITISV_041924 [Viti | 0.987 | 0.639 | 0.675 | 1e-117 | |
| 449453704 | 477 | PREDICTED: putative pentatricopeptide re | 0.996 | 0.649 | 0.627 | 1e-108 | |
| 449528931 | 477 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.996 | 0.649 | 0.627 | 1e-108 | |
| 357474431 | 470 | hypothetical protein MTR_4g078750 [Medic | 0.993 | 0.657 | 0.595 | 1e-105 | |
| 356515150 | 503 | PREDICTED: putative pentatricopeptide re | 0.996 | 0.616 | 0.582 | 1e-104 | |
| 297739174 | 265 | unnamed protein product [Vitis vinifera] | 0.836 | 0.981 | 0.678 | 1e-98 |
| >gi|255567729|ref|XP_002524843.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535903|gb|EEF37563.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 217/313 (69%), Positives = 255/313 (81%), Gaps = 4/313 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN----V 56
M+D Y KN DM SAILLF+ MLKRDVVSWT++I+GF R+G F EAI F+ M+ + +
Sbjct: 157 MLDAYAKNNDMGSAILLFKRMLKRDVVSWTTVISGFSRSGLFREAINFFRVMIAHEDVSL 216
Query: 57 NLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEATYVSVLSSCA L G L+LGKQ+HG I+RNE+VL+VF+GTALID YGKVGC
Sbjct: 217 GLVKPNEATYVSVLSSCASLDEGGSLFLGKQMHGSIIRNEVVLTVFIGTALIDFYGKVGC 276
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L AIRVF SM IK +C+WNAMIS LA+N REK+AL MF+ M+EKG NE+TFV VLTA
Sbjct: 277 LNSAIRVFNSMTIKQICSWNAMISCLANNGREKQALDMFEMMEEKGPSPNEVTFVVVLTA 336
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
C RA+LV+ G+ LF SM + V PIMEHYGCVVDLLGRAGLL EA E +RSMPFEPDAS
Sbjct: 337 CTRAKLVQFGMRLFQSMWSDYSVKPIMEHYGCVVDLLGRAGLLREASEIIRSMPFEPDAS 396
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALLGACKIHGA L +EVG RLL LQP HCG++V+LSNI+AGLE+W+ A D+RKAMV
Sbjct: 397 VLGALLGACKIHGANKLANEVGGRLLRLQPLHCGQFVLLSNINAGLEKWSVAADVRKAMV 456
Query: 297 EAGIRKIPAYSLI 309
EAGI K+PAYSLI
Sbjct: 457 EAGISKVPAYSLI 469
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224115616|ref|XP_002332100.1| predicted protein [Populus trichocarpa] gi|222874920|gb|EEF12051.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/313 (68%), Positives = 256/313 (81%), Gaps = 4/313 (1%)
Query: 2 IDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN---- 57
+D Y KNGDM SA LF++M KRDVVSWTS+INGF +NG FGEAI +F+ MM + +
Sbjct: 160 LDAYAKNGDMGSACCLFKSMPKRDVVSWTSVINGFAKNGLFGEAIRLFREMMLHDDVKCC 219
Query: 58 LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117
V+PNEATYVSVLSSCA L G L +GKQ+HGYI+RNE+ ++VF+GT LID YGKVGCL
Sbjct: 220 FVKPNEATYVSVLSSCANLDERGVLCIGKQIHGYIVRNEVFVTVFIGTTLIDFYGKVGCL 279
Query: 118 ERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177
AIRV+ M++K VCTWNA+ISSLA+N RE++AL MF +MK +GL NE+TF+AVLTAC
Sbjct: 280 SNAIRVYNQMMVKKVCTWNAIISSLANNGREEQALDMFKKMKGEGLCPNEVTFIAVLTAC 339
Query: 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV 237
ARA+LVE+GLELF SM G+F +VPIMEHYGCVVDLLG AGLL EA EF+R MPFEPDAS
Sbjct: 340 ARAKLVEIGLELFQSMAGEFGLVPIMEHYGCVVDLLGMAGLLREASEFIRRMPFEPDASA 399
Query: 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297
LGALLGACKIHGA+DL +EVG RLLELQP+HCG+YV LS+IH G+ RW A D+RK MVE
Sbjct: 400 LGALLGACKIHGAIDLGNEVGSRLLELQPQHCGQYVALSSIHVGVNRWGVAADIRKTMVE 459
Query: 298 AGIRKIPAYSLIE 310
A IR +PA SLI+
Sbjct: 460 ARIRIVPACSLID 472
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485621|ref|XP_003633297.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g10330-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/314 (67%), Positives = 249/314 (79%), Gaps = 4/314 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
M+D KNGDM SA+ LFE+M +RDVVSWTSIINGF RN CF EAI F MMG+ +
Sbjct: 139 MLDALGKNGDMGSALXLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRS 198
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEAT+VSVLSSC L G L+ GKQ+HGYI+RNE+ +VFMGTALI LYGK GC
Sbjct: 199 CLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGC 258
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
LE +++F MV+K VCTWNAMISSLA N REK+AL +F++MK KGL +E+TFVAV+TA
Sbjct: 259 LENVMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMKGLCPDEVTFVAVITA 318
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR++ V LGL F SM F VVP M HYGCVVDLLGRAGLL EA EF++SMPFEPDA+
Sbjct: 319 CARSKFVVLGLGFFQSMRCDFGVVPRMMHYGCVVDLLGRAGLLEEATEFIKSMPFEPDAT 378
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALLGACK+HGA++L +EVGRRLLE QP HCGRYV LSNI+AG E W A D RKAM
Sbjct: 379 VLGALLGACKVHGAIELGNEVGRRLLEFQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMT 438
Query: 297 EAGIRKIPAYSLIE 310
EAGI KIPAYS+I+
Sbjct: 439 EAGISKIPAYSMID 452
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485617|ref|XP_003633296.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g10330-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/315 (67%), Positives = 249/315 (79%), Gaps = 4/315 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
M+D KNGDM SA+ LFE+M +RDVVSWTSIINGF RN CF EAI F MMG+ +
Sbjct: 167 MLDALGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRS 226
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEAT+VSVLSSC L G L+ GKQ+HGYI+RNE+ +VFMGTALI LYGK GC
Sbjct: 227 CLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGC 286
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
LE A+++F MV+K VCTWNAMISSLA N REK+AL +F++MK +GL +E+TFVAV+TA
Sbjct: 287 LENAMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMQGLCPDEVTFVAVITA 346
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR++ V LGL F SM F VVP M HYGCVVDLLGRAGLL EA EF++ MPFEPDA+
Sbjct: 347 CARSKFVVLGLGFFQSMWCDFGVVPRMVHYGCVVDLLGRAGLLEEATEFIKRMPFEPDAT 406
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALLGACK+HGA++L +EVGRRLLELQP HCGRYV LSNI+AG E W A D RKAM
Sbjct: 407 VLGALLGACKVHGAIELGNEVGRRLLELQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMT 466
Query: 297 EAGIRKIPAYSLIEA 311
EAGI KIPAYS+ A
Sbjct: 467 EAGISKIPAYSMNPA 481
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147809483|emb|CAN60147.1| hypothetical protein VITISV_041924 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/311 (67%), Positives = 244/311 (78%), Gaps = 4/311 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
M+D KNGDM SA+ LFE+M +RDVVSWTSIINGF RN CF EAI F MMG+ +
Sbjct: 75 MLDALGKNGDMGSALFLFESMPERDVVSWTSIINGFGRNRCFEEAIQFFVKMMGHEDVRS 134
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEAT+VSVLSSC L G L+ GKQ+HGYI+RNE+ +VFMGTALI LYGK GC
Sbjct: 135 CLVKPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIALYGKTGC 194
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
LE +++F MV+K VCTWNAMISSLA N REK+AL +F++MK GL +E+TFVAV+TA
Sbjct: 195 LENXMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMXGLCPDEVTFVAVITA 254
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR++ V LGL F SM F VVP M HYGCVVDLLGRAGLL EA EF++ MPFEPDA+
Sbjct: 255 CARSKFVVLGLGFFQSMWCDFGVVPRMXHYGCVVDLLGRAGLLEEATEFIKXMPFEPDAT 314
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGALLGACK+HGA++L +EVGRRLLE QP HCGRYV LSNI+AG E W A D RKAM
Sbjct: 315 VLGALLGACKVHGAIELGNEVGRRLLEXQPHHCGRYVTLSNIYAGGEIWGHAADWRKAMT 374
Query: 297 EAGIRKIPAYS 307
EAGI KIPAYS
Sbjct: 375 EAGISKIPAYS 385
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453704|ref|XP_004144596.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g10330-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/311 (62%), Positives = 240/311 (77%), Gaps = 1/311 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D +VKNGD+ SA+ +F +M + DVVSWTS+INGF NG F EA+ F MM + + V+
Sbjct: 158 MLDAFVKNGDLGSAVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFHVMMMSGS-VK 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEATYVSVLSS A L EG L GK+VH YI+RNE SVF+GT LID YGK+G L A
Sbjct: 217 PNEATYVSVLSSSANLDAEGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCA 276
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++VCTWNAMISS ASN RE EAL +F MK +G+ NE+TFVA+LTACAR
Sbjct: 277 RTVFNQMKKREVCTWNAMISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARG 336
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LV+LGL+LF SML F +VPI EHY CVVDLLG+AGLL EA EF+ SMPF+PDASVLGA
Sbjct: 337 KLVKLGLQLFQSMLYDFSIVPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGA 396
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACKIHGA +L +EVGRRLLE+QP+HCGRYV L++++AG E+WNRA +R+ M +A I
Sbjct: 397 LLSACKIHGATELGNEVGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARI 456
Query: 301 RKIPAYSLIEA 311
+K PAYS ++
Sbjct: 457 QKTPAYSRVDP 467
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449528931|ref|XP_004171455.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g10330-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 195/311 (62%), Positives = 240/311 (77%), Gaps = 1/311 (0%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+D +VKNGD+ SA+ +F +M + DVVSWTS+INGF NG F EA+ F MM + + V+
Sbjct: 158 MLDAFVKNGDLGSAVFMFRSMPEHDVVSWTSVINGFWWNGRFLEALWFFXVMMMSGS-VK 216
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNEATYVSVLSS A L EG L GK+VH YI+RNE SVF+GT LID YGK+G L A
Sbjct: 217 PNEATYVSVLSSSANLDAEGVLCRGKEVHAYIIRNEGEFSVFIGTGLIDFYGKMGLLGCA 276
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M ++VCTWNAMISS ASN RE EAL +F MK +G+ NE+TFVA+LTACAR
Sbjct: 277 RTVFNQMKKREVCTWNAMISSFASNGRETEALDLFATMKVEGIHPNEVTFVAILTACARG 336
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+LV+LGL+LF SML F +VPI EHY CVVDLLG+AGLL EA EF+ SMPF+PDASVLGA
Sbjct: 337 KLVKLGLQLFQSMLYDFSIVPITEHYVCVVDLLGKAGLLREATEFIESMPFDPDASVLGA 396
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL ACKIHGA +L +EVGRRLLE+QP+HCGRYV L++++AG E+WNRA +R+ M +A I
Sbjct: 397 LLSACKIHGATELGNEVGRRLLEMQPRHCGRYVTLASMNAGAEKWNRAAVIRRVMADARI 456
Query: 301 RKIPAYSLIEA 311
+K PAYS ++
Sbjct: 457 QKTPAYSRVDP 467
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357474431|ref|XP_003607500.1| hypothetical protein MTR_4g078750 [Medicago truncatula] gi|355508555|gb|AES89697.1| hypothetical protein MTR_4g078750 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 187/314 (59%), Positives = 243/314 (77%), Gaps = 5/314 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
MI+ + NG+M+ A+L+FE M RDVVSWT+++NGF +G FG AI F MM + +
Sbjct: 156 MINAFTMNGNMEGALLVFEWMPYRDVVSWTTMVNGFALSGNFGAAIRFFGTMMRHKDVLD 215
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEATYVSVLSSC L +G L G+QVHGYI+ + L VF+GT+LI+LYGK+GC
Sbjct: 216 CLVKPNEATYVSVLSSCTELEGKGALDFGRQVHGYIVVKGVDLGVFVGTSLINLYGKMGC 275
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L + VF+ MV+++VCTWNAMISSLASN REKEAL +F++MK +GL+ N ITFVAVLTA
Sbjct: 276 LNYSASVFRVMVVREVCTWNAMISSLASNGREKEALDLFEKMKLQGLKPNSITFVAVLTA 335
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR V GLELF SM KF+VVP+MEHYGCVVDLLGRAG + EA E +R+MPF PD +
Sbjct: 336 CARGGFVSEGLELFESMSSKFQVVPVMEHYGCVVDLLGRAGHIQEAAEIIRNMPFPPDKT 395
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGA LGAC+IHGA++L E+ ++L+LQ +HCG+Y++LS+++A ERWN A DLR ++
Sbjct: 396 VLGAFLGACRIHGAIELGEEIA-KMLKLQTQHCGQYLLLSSMYAEKERWNHAADLRNEIM 454
Query: 297 EAGIRKIPAYSLIE 310
EAGI KIPA+S++
Sbjct: 455 EAGIHKIPAFSMVH 468
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356515150|ref|XP_003526264.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g10330-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 384 bits (987), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/314 (58%), Positives = 240/314 (76%), Gaps = 4/314 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN--- 57
MI+ + NGDM++A+ LFE M +RDV SWT++++GF G FG +I F+NMM + +
Sbjct: 188 MINAFSMNGDMEAAVALFERMPRRDVFSWTTVVDGFALKGNFGASIRFFRNMMNHKDVVA 247
Query: 58 -LVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116
LV+PNEAT SVLSSCA L + L GKQVHGY++ NE+ L VF+GT+LI LYGK+GC
Sbjct: 248 GLVKPNEATCSSVLSSCANLDGKAALDWGKQVHGYVVMNEVKLGVFVGTSLIHLYGKMGC 307
Query: 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176
L A VF+ MV+++VCTWNAMISSLAS+ REK AL MFD MK GL+ N ITF AVLTA
Sbjct: 308 LSNAENVFRVMVVREVCTWNAMISSLASHGREKNALDMFDRMKLHGLKPNSITFAAVLTA 367
Query: 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDAS 236
CAR LV GL+LF SM F + P ++HYGCV+DLLGRAG + EA E +R+MPF+PDAS
Sbjct: 368 CARGNLVREGLDLFRSMWYDFGIEPNLKHYGCVIDLLGRAGHIEEAAEIIRNMPFQPDAS 427
Query: 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296
VLGA LGAC+IHGA++L E+G+ +L LQ +H G+YV+LS+++A ERW+RA +LR+ ++
Sbjct: 428 VLGAFLGACRIHGAIELGEEIGKNMLRLQTQHSGQYVLLSSMNAEKERWDRAANLRREIM 487
Query: 297 EAGIRKIPAYSLIE 310
EAGI+KIPAYS++
Sbjct: 488 EAGIQKIPAYSMLH 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739174|emb|CBI28825.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 177/261 (67%), Positives = 210/261 (80%), Gaps = 1/261 (0%)
Query: 50 KNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109
++G +NL +PNEAT+VSVLSSC L G L+ GKQ+HGYI+RNE+ +VFMGTALI
Sbjct: 4 STIVGWMNL-KPNEATFVSVLSSCTNLDGVGALHQGKQIHGYIIRNEVEFTVFMGTALIA 62
Query: 110 LYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169
LYGK GCLE +++F MV+K VCTWNAMISSLA N REK+AL +F++MK KGL +E+T
Sbjct: 63 LYGKTGCLENVMKIFNGMVVKGVCTWNAMISSLACNGREKQALDLFEKMKMKGLCPDEVT 122
Query: 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229
FVAV+TACAR++ V LGL F SM F VVP M HYGCVVDLLGRAGLL EA EF++SM
Sbjct: 123 FVAVITACARSKFVVLGLGFFQSMRCDFGVVPRMMHYGCVVDLLGRAGLLEEATEFIKSM 182
Query: 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289
PFEPDA+VLGALLGACK+HGA++L +EVGRRLLE QP HCGRYV LSNI+AG E W A
Sbjct: 183 PFEPDATVLGALLGACKVHGAIELGNEVGRRLLEFQPHHCGRYVTLSNIYAGGEIWGHAA 242
Query: 290 DLRKAMVEAGIRKIPAYSLIE 310
D RKAM EAGI KIPAYS+I+
Sbjct: 243 DWRKAMTEAGISKIPAYSMID 263
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 311 | ||||||
| TAIR|locus:2012858 | 467 | AT1G10330 "AT1G10330" [Arabido | 0.990 | 0.659 | 0.545 | 3.1e-90 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.977 | 0.490 | 0.433 | 3.2e-65 | |
| TAIR|locus:2011892 | 596 | AT1G50270 "AT1G50270" [Arabido | 0.980 | 0.511 | 0.425 | 6.9e-63 | |
| TAIR|locus:2093920 | 687 | AT3G15930 "AT3G15930" [Arabido | 0.980 | 0.443 | 0.396 | 1e-61 | |
| TAIR|locus:2144143 | 622 | AT5G06540 [Arabidopsis thalian | 0.980 | 0.490 | 0.396 | 4.3e-61 | |
| TAIR|locus:2140235 | 781 | AT4G02750 [Arabidopsis thalian | 0.980 | 0.390 | 0.406 | 1.9e-60 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.977 | 0.470 | 0.414 | 2.4e-60 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.974 | 0.592 | 0.399 | 3.1e-60 | |
| TAIR|locus:2141171 | 857 | AT4G21300 [Arabidopsis thalian | 0.980 | 0.355 | 0.395 | 1e-59 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.967 | 0.505 | 0.397 | 1e-59 |
| TAIR|locus:2012858 AT1G10330 "AT1G10330" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 900 (321.9 bits), Expect = 3.1e-90, P = 3.1e-90
Identities = 169/310 (54%), Positives = 233/310 (75%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN-LV 59
++D +NG+MD A F+ M DVVSWT++INGF + G +A+ VF M+ N ++
Sbjct: 158 LLDACGRNGEMDYAFEYFQRMPVTDVVSWTTVINGFSKKGLHAKALMVFGEMIQNERAVI 217
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
PNEAT+VSVLSSCA ++GG+ LGKQ+HGY++ EI+L+ +GTAL+D+YGK G LE
Sbjct: 218 TPNEATFVSVLSSCANF-DQGGIRLGKQIHGYVMSKEIILTTTLGTALLDMYGKAGDLEM 276
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A+ +F + K VC WNA+IS+LASN R K+AL MF+ MK + N IT +A+LTACAR
Sbjct: 277 ALTIFDQIRDKKVCAWNAIISALASNGRPKQALEMFEMMKSSYVHPNGITLLAILTACAR 336
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
++LV+LG++LF S+ +++++P EHYGCVVDL+GRAGLL +A F++S+PFEPDASVLG
Sbjct: 337 SKLVDLGIQLFSSICSEYKIIPTSEHYGCVVDLIGRAGLLVDAANFIQSLPFEPDASVLG 396
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGACKIH +L + VG++L+ LQP+HCG+YV LS +A W+ A +RKAM+EAG
Sbjct: 397 ALLGACKIHENTELGNTVGKQLIGLQPQHCGQYVALSTFNALDSNWSEAEKMRKAMIEAG 456
Query: 300 IRKIPAYSLI 309
IRKIPAYS++
Sbjct: 457 IRKIPAYSVL 466
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 664 (238.8 bits), Expect = 3.2e-65, P = 3.2e-65
Identities = 134/309 (43%), Positives = 197/309 (63%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I GYVK G MD A+ LF M +++ +SWT++I+G+V+ EA+ +F M + V
Sbjct: 187 VIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD--VE 244
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ + + LS+CA L G L GK +H Y+ + I + +G LID+Y K G +E A
Sbjct: 245 PDNVSLANALSACAQL---GALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEA 301
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VFK++ K V W A+IS A + +EA+ F EM++ G++ N ITF AVLTAC+
Sbjct: 302 LEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYT 361
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G +F+SM + + P +EHYGC+VDLLGRAGLL EAK F++ MP +P+A + GA
Sbjct: 362 GLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGA 421
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH ++L E+G L+ + P H GRYV +NIHA ++W++A + R+ M E G+
Sbjct: 422 LLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGV 481
Query: 301 RKIPAYSLI 309
K+P S I
Sbjct: 482 AKVPGCSTI 490
|
|
| TAIR|locus:2011892 AT1G50270 "AT1G50270" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 132/310 (42%), Positives = 193/310 (62%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++D Y K D A +F+ M R+VV+WT++I G+V++ CF + + VF+ M+ + V
Sbjct: 246 LVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSD--VA 303
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PNE T SVLS+CA + G L+ G++VH Y+++N I ++ GT LIDLY K GCLE A
Sbjct: 304 PNEKTLSSVLSACAHV---GALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + K+V TW AMI+ A++ ++A +F M + NE+TF+AVL+ACA
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE G LF SM G+F + P +HY C+VDL GR GLL EAK + MP EP V GA
Sbjct: 421 GLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGA 480
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
L G+C +H +L R+++LQP H GRY +L+N+++ + W+ +RK M + +
Sbjct: 481 LFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQV 540
Query: 301 RKIPAYSLIE 310
K P +S IE
Sbjct: 541 VKSPGFSWIE 550
|
|
| TAIR|locus:2093920 AT3G15930 "AT3G15930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 123/310 (39%), Positives = 200/310 (64%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
++ GYV+ G++ A F+ M RD +SWT +I+G++R GCF E++ +F+ M + ++
Sbjct: 308 IVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQ-SAGMI- 365
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T VSVL++CA L G L +G+ + YI +N+I V +G ALID+Y K GC E+A
Sbjct: 366 PDEFTMVSVLTACAHL---GSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKA 422
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M +D TW AM+ LA+N + +EA+ +F +M++ ++ ++IT++ VL+AC +
Sbjct: 423 QKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHS 482
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
+V+ + F M + P + HYGC+VD+LGRAGL+ EA E +R MP P++ V GA
Sbjct: 483 GMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGA 542
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++H + +++LEL+P + Y +L NI+AG +RW ++R+ +V+ I
Sbjct: 543 LLGASRLHNDEPMAELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAI 602
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 603 KKTPGFSLIE 612
|
|
| TAIR|locus:2144143 AT5G06540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 123/310 (39%), Positives = 202/310 (65%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
M+ GY K G +++A +F+ M R++ +W+ +ING+ +N CF +AI +F+ M +V
Sbjct: 189 MVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFE-FMKREGVVA 247
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
NE VSV+SSCA L G L G++ + Y++++ + +++ +GTAL+D++ + G +E+A
Sbjct: 248 -NETVMVSVISSCAHL---GALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKA 303
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
I VF+ + D +W+++I LA + +A+ F +M G ++TF AVL+AC+
Sbjct: 304 IHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHG 363
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LVE GLE++ +M + P +EHYGC+VD+LGRAG L+EA+ F+ M +P+A +LGA
Sbjct: 364 GLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGA 423
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGACKI+ ++ VG L++++P+H G YV+LSNI+A +W++ LR M E +
Sbjct: 424 LLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLV 483
Query: 301 RKIPAYSLIE 310
+K P +SLIE
Sbjct: 484 KKPPGWSLIE 493
|
|
| TAIR|locus:2140235 AT4G02750 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 126/310 (40%), Positives = 192/310 (61%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + G + A LF+ M KRD VSW ++I G+ ++G EA+ +F M R
Sbjct: 349 MITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREGG--R 406
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
N +++ S LS+CA +V L LGKQ+HG +++ F+G AL+ +Y K G +E A
Sbjct: 407 LNRSSFSSALSTCADVV---ALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEA 463
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+FK M KD+ +WN MI+ + + + AL F+ MK +GL+ ++ T VAVL+AC+
Sbjct: 464 NDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDATMVAVLSACSHT 523
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
LV+ G + F++M + V+P +HY C+VDLLGRAGLL +A M++MPFEPDA++ G
Sbjct: 524 GLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGT 583
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LLGA ++HG +L ++ ++P++ G YV+LSN++A RW LR M + G+
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 643
Query: 301 RKIPAYSLIE 310
+K+P YS IE
Sbjct: 644 KKVPGYSWIE 653
|
|
| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 129/311 (41%), Positives = 200/311 (64%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM-GNVNLV 59
MIDGY++ GD +A +LF+ M +R VVSW ++I+G+ NG F +A+ VF+ M G++
Sbjct: 214 MIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDI--- 270
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
RPN T VSVL + + L G L LG+ +H Y + I + +G+ALID+Y K G +E+
Sbjct: 271 RPNYVTLVSVLPAISRL---GSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEK 327
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
AI VF+ + ++V TW+AMI+ A + + +A+ F +M++ G+R +++ ++ +LTAC+
Sbjct: 328 AIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSH 387
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
LVE G F M+ + P +EHYGC+VDLLGR+GLL EA+EF+ +MP +PD +
Sbjct: 388 GGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWK 447
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALLGAC++ G V++ V L+++ P G YV LSN++A W+ +++R M E
Sbjct: 448 ALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKD 507
Query: 300 IRKIPAYSLIE 310
IRK P SLI+
Sbjct: 508 IRKDPGCSLID 518
|
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| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 123/308 (39%), Positives = 196/308 (63%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
MI GY + GDM +A+ LF++M +++V SWT++I+GF +NG + EA+ +F M + + V+
Sbjct: 154 MITGYQRRGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKS-VK 212
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
PN T VSVL +CA L G L +G+++ GY N ++++ A I++Y K G ++ A
Sbjct: 213 PNHITVVSVLPACANL---GELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVA 269
Query: 121 IRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
R+F+ + +++C+WN+MI SLA++ + EAL +F +M +G + + +TFV +L AC
Sbjct: 270 KRLFEELGNQRNLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVH 329
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+V G ELF SM ++ P +EHYGC++DLLGR G L EA + +++MP +PDA V G
Sbjct: 330 GGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWG 389
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC HG V++ L +L+P + G V++SNI+A E+W+ +RK M +
Sbjct: 390 TLLGACSFHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKET 449
Query: 300 IRKIPAYS 307
+ K YS
Sbjct: 450 MTKAAGYS 457
|
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| TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 123/311 (39%), Positives = 193/311 (62%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K G M+ A +FE + KRD+VSW S+I ++ AI +F+ M V+ +
Sbjct: 482 VIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQM--GVSGIC 539
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
+ + + LS+CA L +E GK +HG+++++ + V+ + LID+Y K G L+ A
Sbjct: 540 YDCVSISAALSACANLPSES---FGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAA 596
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTACAR 179
+ VFK+M K++ +WN++I++ ++ + K++L +F EM EK G+R ++ITF+ ++++C
Sbjct: 597 MNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCH 656
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
V+ G+ F SM + + P EHY CVVDL GRAG L+EA E ++SMPF PDA V G
Sbjct: 657 VGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWG 716
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
LLGAC++H V+L +L++L P + G YV++SN HA W T +R M E
Sbjct: 717 TLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKERE 776
Query: 300 IRKIPAYSLIE 310
++KIP YS IE
Sbjct: 777 VQKIPGYSWIE 787
|
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| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 122/307 (39%), Positives = 194/307 (63%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
Y GD+ SA +F+ M ++D+V+W S+INGF NG EA+ ++ M N ++P+
Sbjct: 166 YANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEM--NSKGIKPDGF 223
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T VS+LS+CA + G L LGK+VH Y+++ + ++ L+DLY + G +E A +F
Sbjct: 224 TIVSLLSACAKI---GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE-KGLRANEITFVAVLTACARAQLV 183
MV K+ +W ++I LA N KEA+ +F M+ +GL EITFV +L AC+ +V
Sbjct: 281 DEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMV 340
Query: 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLG 243
+ G E F M ++++ P +EH+GC+VDLL RAG + +A E+++SMP +P+ + LLG
Sbjct: 341 KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLG 400
Query: 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303
AC +HG DL ++L+L+P H G YV+LSN++A +RW+ +RK M+ G++K+
Sbjct: 401 ACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKV 460
Query: 304 PAYSLIE 310
P +SL+E
Sbjct: 461 PGHSLVE 467
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SY75 | PPR30_ARATH | No assigned EC number | 0.5451 | 0.9903 | 0.6595 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.01930032 | hypothetical protein (474 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 311 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-80 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-62 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-35 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-26 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 4e-80
Identities = 123/311 (39%), Positives = 189/311 (60%), Gaps = 9/311 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGF-VRNGCFGEAICVFKNMMGNVNLV 59
+I+ Y K +D A+ +F N+ ++DV+SWTSII G + N CF EA+ F+ M+ +
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF-EALIFFRQMLLTL--- 485
Query: 60 RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER 119
+PN T ++ LS+CA + G L GK++H ++LR I F+ AL+DLY + G +
Sbjct: 486 KPNSVTLIAALSACARI---GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNY 542
Query: 120 AIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
A F S KDV +WN +++ ++ + A+ +F+ M E G+ +E+TF+++L AC+R
Sbjct: 543 AWNQFNSHE-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR 601
Query: 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239
+ +V GLE FHSM K+ + P ++HY CVVDLLGRAG L+EA F+ MP PD +V G
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWG 661
Query: 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299
ALL AC+IH V+L + + EL P G Y++L N++A +W+ +RK M E G
Sbjct: 662 ALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721
Query: 300 IRKIPAYSLIE 310
+ P S +E
Sbjct: 722 LTVDPGCSWVE 732
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 4e-62
Identities = 105/310 (33%), Positives = 170/310 (54%), Gaps = 5/310 (1%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+ID Y K GD++ A +F+ M ++ V+W S++ G+ +G EA+C++ M + V
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VS 322
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
++ T+ ++ + L L KQ H ++R L + TAL+DLY K G +E A
Sbjct: 323 IDQFTFSIMIRIFSRL---ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
VF M K++ +WNA+I+ ++ R +A+ MF+ M +G+ N +TF+AVL+AC +
Sbjct: 380 RNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439
Query: 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240
L E G E+F SM + P HY C+++LLGR GLL EA +R PF+P ++ A
Sbjct: 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAA 499
Query: 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300
LL AC+IH ++L +L + P+ YVVL N++ R A + + + G+
Sbjct: 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
Query: 301 RKIPAYSLIE 310
PA + IE
Sbjct: 560 SMHPACTWIE 569
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 5e-35
Identities = 67/189 (35%), Positives = 109/189 (57%), Gaps = 6/189 (3%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I Y+ G A +F M +D VSWT++I+G+ +NG +A+ + M + V
Sbjct: 329 LIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM--EQDNVS 386
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+E T SVLS+CA L G L +G ++H R ++ V + ALI++Y K C+++A
Sbjct: 387 PDEITIASVLSACACL---GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+ VF ++ KDV +W ++I+ L N+R EAL+ F +M L+ N +T +A L+ACAR
Sbjct: 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARI 502
Query: 181 QLVELGLEL 189
+ G E+
Sbjct: 503 GALMCGKEI 511
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 3e-31
Identities = 66/189 (34%), Positives = 108/189 (57%), Gaps = 5/189 (2%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR 60
+I YVK GD+ SA L+F+ M +RD +SW ++I+G+ NG E + +F M V
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS--VD 285
Query: 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120
P+ T SV+S+C L +E LG+++HGY+++ + V + +LI +Y +G A
Sbjct: 286 PDLMTITSVISACELLGDER---LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342
Query: 121 IRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180
+VF M KD +W AMIS N +AL + M++ + +EIT +VL+ACA
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402
Query: 181 QLVELGLEL 189
+++G++L
Sbjct: 403 GDLDVGVKL 411
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 81/274 (29%), Positives = 137/274 (50%), Gaps = 9/274 (3%)
Query: 5 YVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA 64
+VK G + A LF+ M +R++ SW +II G V G + EA +F+ M + + P
Sbjct: 168 HVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-- 225
Query: 65 TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVF 124
T+V +L + AGL G G+Q+H +L+ +V F+ ALID+Y K G +E A VF
Sbjct: 226 TFVVMLRASAGL---GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282
Query: 125 KSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184
M K WN+M++ A + +EAL ++ EM++ G+ ++ TF ++ +R L+E
Sbjct: 283 DGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLE 342
Query: 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGA 244
+ ++ + I+ + +VDL + G + +A+ MP + S AL+
Sbjct: 343 HAKQAHAGLIRTGFPLDIVANTA-LVDLYSKWGRMEDARNVFDRMPRKNLIS-WNALIAG 400
Query: 245 CKIHGAVDLCHEVGRRLLE--LQPKHCGRYVVLS 276
HG E+ R++ + P H VLS
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 4e-26
Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 53/338 (15%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMM--GNVNL 58
M+ +V+ G++ A +F M +RD+ SW ++ G+ + G F EA+C++ M+ G
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG---- 182
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
VRP+ T+ VL +C G+ + L G++VH +++R L V + ALI +Y K G +
Sbjct: 183 VRPDVYTFPCVLRTCGGIPD---LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV 239
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A VF M +D +WNAMIS N E L +F M+E + + +T +V++AC
Sbjct: 240 SARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299
Query: 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFE------ 232
LG E+ H + K + ++ + G EA++ M +
Sbjct: 300 LLGDERLGREM-HGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWT 358
Query: 233 ----------------------------PDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264
PD + ++L AC G +D VG +L EL
Sbjct: 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLD----VGVKLHEL 414
Query: 265 -QPKHCGRYVVLSN----IHAGLERWNRATDLRKAMVE 297
+ K YVV++N +++ + ++A ++ + E
Sbjct: 415 AERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE 452
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 5e-13
Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 14/245 (5%)
Query: 19 ENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78
+ +++ VS S I V G EA+ +F+ + P TY +++ +C L +
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKS 138
Query: 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAM 138
+ K V+ ++ + +M ++ ++ K G L A R+F M +++ +W +
Sbjct: 139 IRCV---KAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTI 195
Query: 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE 198
I L +EA +F EM E G A TFV +L A A G +L H + K
Sbjct: 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL-HCCVLKTG 254
Query: 199 VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG--ALLGACKIHG----AVD 252
VV ++D+ + G + +A+ M P+ + + ++L +HG A+
Sbjct: 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGM---PEKTTVAWNSMLAGYALHGYSEEALC 311
Query: 253 LCHEV 257
L +E+
Sbjct: 312 LYYEM 316
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-11
Identities = 45/146 (30%), Positives = 78/146 (53%), Gaps = 10/146 (6%)
Query: 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKE-ALVMFDEMKEKGLRANEITFV 171
K ++ A R K + + T+N M+ S+ ++S++ + AL + ++E GL+A+ +
Sbjct: 418 KQRAVKEAFRFAKLIRNPTLSTFN-MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYT 476
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF-----M 226
+++ CA++ V+ E+FH M+ V + +G ++D RAG + AK F M
Sbjct: 477 TLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQV--AKAFGAYGIM 533
Query: 227 RSMPFEPDASVLGALLGACKIHGAVD 252
RS +PD V AL+ AC GAVD
Sbjct: 534 RSKNVKPDRVVFNALISACGQSGAVD 559
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 3e-10
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179
DV T+N +I + +EAL +F+EMK++G++ N T+ ++ +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
V +E YV++ C + + G +V L + L V +G A++ ++ + G L
Sbjct: 82 VPVDEDAYVALFRLCE---WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELV 138
Query: 119 RAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178
A VF M +D+ +WN ++ A EAL ++ M G+R + TF VL C
Sbjct: 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 1e-07
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74
DVV++ ++I+G+ + G EA+ +F M ++PN TY ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKK--RGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 1e-07
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKR----DVVSWTSIINGFVR 38
+IDGY K G ++ A+ LF M KR +V +++ +I+G +
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 3e-07
Identities = 42/199 (21%), Positives = 95/199 (47%), Gaps = 13/199 (6%)
Query: 1 MIDGYVKNGDMDSA-----ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGN 55
+IDG + G + A I+ +N +K D V + ++I+ ++G A V M
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571
Query: 56 VNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG 115
+ + P+ T +++ +CA N G + K+V+ I I + + T ++ + G
Sbjct: 572 THPIDPDHITVGALMKACA---NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628
Query: 116 CLERAIRVFKSMVIKDVCTWNAMISSL---ASNSRE-KEALVMFDEMKEKGLRANEITFV 171
+ A+ ++ M K V S+L A ++ + +A + + +++G++ +++
Sbjct: 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688
Query: 172 AVLTACARAQLVELGLELF 190
+++ AC+ A+ + LEL+
Sbjct: 689 SLMGACSNAKNWKKALELY 707
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 3e-05
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 134 TWNAMISSLASNSREKEALVMFDEMKEKGL 163
T+N++IS + +EAL +F EMKEKG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 7e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167
T+N +I L R +EAL +F EMKE+G+ +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 46/223 (20%)
Query: 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFK 125
Y +++S+CA G + +V ++ + +V ALID + G + +A +
Sbjct: 475 YTTLISTCA---KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 126 SMVIKDV----CTWNAMISSLASNSREKEALVMFDEMK--EKGLRANEITFVAVLTACAR 179
M K+V +NA+IS+ + A + EMK + + IT A++ ACA
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 180 AQLVELGLELFHSM----------------------------------LGKFEVVPIMEH 205
A V+ E++ + + K V P
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 206 YGCVVDLLGRAGLLSEAKEF---MRSMPFEPDASVLGALLGAC 245
+ +VD+ G AG L +A E R + +L+GAC
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 105 TALIDLYGKVGCLERAIRVFKSMVIK----DVCTWNAMISSLA 143
LID Y K G +E A+++F M + +V T++ +I L
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 3e-04
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 20 NMLKRDVVSWTSIINGFVRNGCFGEAICVFKNM 52
LK DVV++ ++I+G R G EA+ + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.002
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 1 MIDGYVKNGDMDSAILLFENMLKRDV 26
+I GY K G ++ A+ LF+ M ++ V
Sbjct: 6 LISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMM 53
V++ ++I+G + G EA+ +FK M
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMK 27
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.002
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 131 DVCTWNAMISSLASNSREKEALVMFDEMK 159
DV T+N +I L R EA+ + DEM+
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 27 VSWTSIINGFVRNGCFGEAICVFKNMMGN 55
V++ S+I+G+ + G EA+ +FK M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.92 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.86 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.82 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.78 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.78 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.75 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.74 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.73 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.7 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.69 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.68 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.66 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.62 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.58 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.53 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.53 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.53 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.5 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.5 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.49 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.47 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.46 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.45 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.45 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.44 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.43 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.42 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.41 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.39 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.38 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.36 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.34 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.33 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.32 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.3 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.29 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.28 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.27 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.24 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.22 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.21 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.21 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.18 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.17 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.08 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.04 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.04 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 99.02 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.02 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.0 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.98 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.98 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.98 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.97 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.95 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.93 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.93 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.93 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.92 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.91 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.91 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.89 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.87 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.87 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.87 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.87 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.86 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.85 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.85 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.78 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.78 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.77 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.75 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.74 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.73 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.73 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.72 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.72 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.71 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.67 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.65 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.53 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.51 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.51 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.5 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.49 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.49 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.49 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.49 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.48 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.45 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.42 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.41 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.41 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.4 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.4 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.38 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.37 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.35 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.33 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.32 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.32 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.29 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.26 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.25 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.25 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.22 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 98.21 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.21 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.2 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.2 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.17 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.17 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.16 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.14 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 98.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.14 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.08 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.08 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.05 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.02 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.99 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.98 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.98 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.96 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.95 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.95 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.93 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.92 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.92 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.89 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.88 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.84 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.83 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.81 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.78 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.77 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.76 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.76 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.76 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.64 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.62 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.6 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.53 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.52 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.52 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.51 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.5 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.5 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.49 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.47 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.46 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.45 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.44 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.43 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.4 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.38 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.32 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.29 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.22 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.14 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.13 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.09 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.08 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.08 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.07 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.05 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.05 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.05 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.91 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.88 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.84 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.72 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.71 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.68 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.63 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.62 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.59 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.55 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.53 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.53 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.46 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.46 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 96.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.33 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.21 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.18 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.11 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.09 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.09 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.03 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.02 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.0 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.98 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.87 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.83 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.8 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.7 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.68 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.66 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.55 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.46 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.41 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 95.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.35 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.33 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.26 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.21 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.95 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.76 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.75 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.7 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 94.7 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.66 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.47 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.46 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.45 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.3 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.3 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 94.26 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.24 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 94.22 | |
| PRK09687 | 280 | putative lyase; Provisional | 94.21 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.2 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.19 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 94.18 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.16 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.11 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 94.01 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.0 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.9 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.85 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 93.81 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.69 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.63 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.61 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.44 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.23 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.23 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.05 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 93.02 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.99 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 92.88 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.67 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.58 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.49 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.42 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.33 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.17 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 91.88 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 91.51 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.21 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.18 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.12 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.1 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 90.88 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.85 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 90.71 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 90.64 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.64 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 90.62 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 90.06 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.71 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.33 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.19 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.04 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.98 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 88.88 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.63 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.28 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.26 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 88.21 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.14 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.96 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 87.82 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 87.8 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 87.4 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.37 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 87.29 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 87.02 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 86.92 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 86.83 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.71 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 86.69 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 86.61 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 86.4 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 86.3 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 85.96 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 85.73 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.6 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.19 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.1 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.91 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 84.58 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.49 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 84.23 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 84.17 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 84.07 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 83.73 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 83.26 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 82.99 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 82.94 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 82.75 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 82.64 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.42 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 82.16 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 81.61 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 81.21 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 81.12 | |
| PF14689 | 62 | SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do | 81.07 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 80.23 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-56 Score=396.09 Aligned_cols=306 Identities=34% Similarity=0.603 Sum_probs=298.0
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
||++|++.|++++|.++|+.|.++|..+||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|+. .|
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g--~~pd~~t~~~ll~a~~~---~g 339 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG--VSIDQFTFSIMIRIFSR---LA 339 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHh---cc
Confidence 57899999999999999999999999999999999999999999999999999999 99999999999998876 55
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
++++|.+++..|.+.|++||..++++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+
T Consensus 340 ~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419 (697)
T ss_pred chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+++.|+..+|+.++++|++.|++++|.+++++|+..|+..+|++
T Consensus 420 ~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~ 499 (697)
T PLN03081 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAA 499 (697)
T ss_pred hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999988779999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCccccccC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIEA 311 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 311 (311)
|+.+|...|+++.|..+++++.+..|++..+|..|+..|.+.|+|++|.+++++|.+.|+.++|++||+++
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~ 570 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEV 570 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEE
Confidence 99999999999999999999999999988899999999999999999999999999999999999999874
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-52 Score=375.53 Aligned_cols=304 Identities=40% Similarity=0.734 Sum_probs=294.5
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
||++|++.|++++|.++|++|.++|..+|+++|.+|++.|+.++|+++|++|.. + ++||..||+.++.+|+.. |
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~--~~pd~~t~~~lL~a~~~~---g 503 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T--LKPNSVTLIAALSACARI---G 503 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C--CCCCHhHHHHHHHHHhhh---c
Confidence 578999999999999999999999999999999999999999999999999985 4 899999999999998875 4
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
.++.+.+++..+.+.|+.++..++++|+++|++.|++++|.++|+++ .+|..+|+++|.+|++.|+.++|.++|++|.+
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~ 582 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE 582 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++
T Consensus 583 ~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~a 662 (857)
T PLN03077 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662 (857)
T ss_pred cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999999999999996669999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCccccccC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLIEA 311 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~ 311 (311)
|+.+|...|+.+.++...+++.++.|++...|..|...|...|+|++|.++.+.|++.|++++||+|||+|
T Consensus 663 Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~ 733 (857)
T PLN03077 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEV 733 (857)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=362.35 Aligned_cols=298 Identities=19% Similarity=0.285 Sum_probs=206.4
Q ss_pred ChhhhhhcCChHHHHHHHHHhc----cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 1 MIDGYVKNGDMDSAILLFENML----KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
||++|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|..
T Consensus 478 LI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G--v~PD~vTYnsLI~a~~k- 554 (1060)
T PLN03218 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN--VKPDRVVFNALISACGQ- 554 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHH-
Confidence 3566667777777777777663 4566677777777777777777777777776666 66777777777765554
Q ss_pred hhcCcchhHHHHHHHHhh--ccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc----cchHhhHHHHHHHHHcCCCHHH
Q 040965 77 VNEGGLYLGKQVHGYILR--NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV----IKDVCTWNAMISSLASNSREKE 150 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~ 150 (311)
.|++++|.+++++|.+ .|+.||..+|++++.+|++.|++++|.++|++|. .|+..+|+.+|.+|++.|++++
T Consensus 555 --~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~de 632 (1060)
T PLN03218 555 --SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF 632 (1060)
T ss_pred --CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHH
Confidence 4446777777777754 4566677777777777777777777777777663 3455677777777777777777
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+. |+.|+..+|+.||.+|++.|++++|.++|++|
T Consensus 633 Al~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777777777665 67777777777777777777777777777766
Q ss_pred --CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 230 --PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 230 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
++.||..+|+.||.+|++.|++++|.++|++|.+.+ .++..+|..++.+|.+.|++++|.+++++|.+.|+.|+.
T Consensus 712 ~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 566777777777777777777777777777776533 223347777777777777777777777777777776664
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=360.74 Aligned_cols=298 Identities=19% Similarity=0.286 Sum_probs=273.6
Q ss_pred ChhhhhhcCChHHHHHHHHHhc----cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 1 MIDGYVKNGDMDSAILLFENML----KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
||.+|++.|+++.|..+|+.|. .||..+|+++|.+|++.|++++|.++|++|.+.| +.||..+|+.++.+|+.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G--v~PdvvTynaLI~gy~k- 519 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG--VEANVHTFGALIDGCAR- 519 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHH-
Confidence 4788999999999999999994 5789999999999999999999999999999988 89999999999987765
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc------cchHhhHHHHHHHHHcCCCHHH
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV------IKDVCTWNAMISSLASNSREKE 150 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~ 150 (311)
.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|++++.+|++.|++++
T Consensus 520 --~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~lde 597 (1060)
T PLN03218 520 --AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597 (1060)
T ss_pred --CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHH
Confidence 66699999999999999999999999999999999999999999999983 5789999999999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
|.++|++|.+.|+.|+..+|+.++.+|++.|++++|..+|++|.+. |+.||..+|+.++++|++.|++++|.+++++|
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999887 99999999999999999999999999999999
Q ss_pred --CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 230 --PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 230 --~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
++.||..+|+.|+.+|++.|++++|.++|++|.+.+ .++..+|+.|+.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 788999999999999999999999999999998643 234569999999999999999999999999999998875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=354.02 Aligned_cols=297 Identities=26% Similarity=0.403 Sum_probs=283.0
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
||++|++.|+++.|.++|++|..||..+||+++.+|++.|++++|+++|++|.+.| ..|+..+|+.++.+|... |
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g--~~p~~~t~~~ll~a~~~~---~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDG--SDAEPRTFVVMLRASAGL---G 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCChhhHHHHHHHHhcC---C
Confidence 57899999999999999999999999999999999999999999999999999998 999999999999988764 5
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
..+.+.+++..+.+.|+.||..++++|+++|++.|++++|.++|++|..+|..+|+++|.+|++.|++++|.++|++|.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.|+.||..||+.++.+|++.|+++.|.+++..|.+. |+.||..+|+.|+++|++.|++++|.++|++|. .||..+|++
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~ 396 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNA 396 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999996 689999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHH-ccCCCCC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVE-AGIRKIP 304 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~ 304 (311)
+|.+|++.|+.++|.++|++|.+.+ .++..+|..++.+|.+.|.+++|.++|+.|.+ .|+.|+.
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~ 462 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999744 23445999999999999999999999999986 5888775
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=346.67 Aligned_cols=298 Identities=26% Similarity=0.416 Sum_probs=283.4
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
||++|++.|+++.|..+|++|..+|..+||++|.+|++.|++++|+++|++|.+.| +.||..||+.++.+|.. .|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g--~~Pd~~ty~~ll~a~~~---~g 302 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS--VDPDLMTITSVISACEL---LG 302 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCChhHHHHHHHHHHh---cC
Confidence 57899999999999999999999999999999999999999999999999999999 99999999999998876 55
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
+.+.+.+++..+.+.|+.||..+|++|+.+|++.|++++|.++|++|..||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.|+.||..||+.++.+|++.|+++.|.++++.+.+. |+.|+..+|+.|+++|++.|++++|.++|++|. .+|..+|+.
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~ 460 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTS 460 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHH
Confidence 999999999999999999999999999999999988 999999999999999999999999999999996 689999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCc
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPA 305 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 305 (311)
++.+|.+.|+.++|..+|++|.+..+++..+|..++.+|.+.|..+.+.+++..|.+.|+.++..
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 99999999999999999999987555555699999999999999999999999999888876653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-25 Score=187.31 Aligned_cols=295 Identities=16% Similarity=0.143 Sum_probs=241.3
Q ss_pred hhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch---HHHHHHHHHhhhhhh
Q 040965 5 YVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE---ATYVSVLSSCAGLVN 78 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~ 78 (311)
+...|++++|+..|+++.. | +..++..+...+...|++++|..+++.+...+ ..++. ..+..+...+ ..
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~La~~~---~~ 119 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLALQELGQDY---LK 119 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHH---HH
Confidence 4577999999999999953 3 55689999999999999999999999998754 22222 2344444433 33
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch--------HhhHHHHHHHHHcCCCHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD--------VCTWNAMISSLASNSREKE 150 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~ 150 (311)
.|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+...+ ...+..++..+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 778999999999998864 4567889999999999999999999999985432 2245667788899999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+. +......+++.++.+|...|++++|.+.++++
T Consensus 199 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 199 ARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999998763 335667888889999999999999999999864 22222456888999999999999999999998
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc---cchhHHHHHHHHHHHHccCCCCCcc
Q 040965 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG---LERWNRATDLRKAMVEAGIRKIPAY 306 (311)
Q Consensus 230 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 306 (311)
...|+...+..++..+.+.|++++|..+++++.+..|++. .+..++..+.. .|+..++..++++|.+.++.|+|.+
T Consensus 277 ~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 277 EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 5578887888888999999999999999999999999886 66666666553 5689999999999999999999986
Q ss_pred cc
Q 040965 307 SL 308 (311)
Q Consensus 307 ~~ 308 (311)
.+
T Consensus 356 ~c 357 (389)
T PRK11788 356 RC 357 (389)
T ss_pred EC
Confidence 54
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-22 Score=183.79 Aligned_cols=287 Identities=13% Similarity=0.061 Sum_probs=207.5
Q ss_pred hhhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 78 (311)
+..|.+.|++++|..+++.+.. .+...|..+..++.+.|++++|...|+++.+.. +.+...+..+..++. .
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~---~ 647 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ---PDSALALLLLADAYA---V 647 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHH---H
Confidence 4567888999999999988842 367788888999999999999999999887743 223444554544333 3
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. +.+..++..++..+...|++++|..+++.+.. .+...+..+...+...|++++|.+.|
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 726 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAY 726 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666888888888888764 34567777888888888888888888887733 25566777777788888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EP 233 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p 233 (311)
+++...+ |+..++..++.++.+.|+.++|...++++.+. .+.+...+..+...|...|++++|.+.|+++ .. ++
T Consensus 727 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 727 RKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC
Confidence 8877653 44466666777777788888888887777753 3445666777777777788888888887777 22 33
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+...+..+...+...|+ ++|...++++.+..|+++..+..++.++...|++++|..+++++.+.+.
T Consensus 803 ~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 803 NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 45566666677777777 6677777777777777766777777777777777777777777776654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-22 Score=183.06 Aligned_cols=281 Identities=12% Similarity=0.103 Sum_probs=121.7
Q ss_pred hhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.|.+.|++++|...|+.+.. .+...+..+..++.+.|++++|...|+++.+.. +.+...+..+...+. ..|
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~---~~~ 683 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDNTEAQIGLAQLLL---AAK 683 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHH---HcC
Confidence 34444444444444444421 133344444444444445555554444444321 112233333332211 133
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
++++|.++++.+.+.. +++...+..+...+...|++++|...|+++. .|+..++..++.++.+.|++++|.+.++++
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 762 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAW 762 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444444444444443 2233344444444444445555544444442 222233444444444444555554444444
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cc
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-AS 236 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 236 (311)
.+.. +.+...+..+...|...|+.++|...|+++.+. .+++..+++.++..+...|+ ++|.++++++ ...|+ ..
T Consensus 763 l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 838 (899)
T TIGR02917 763 LKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPA 838 (899)
T ss_pred HHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcH
Confidence 4431 223444444444444444555555544444432 12233344444444444444 4444444444 22222 22
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
.+..+...+...|++++|...++++++.+|.++.++..++.++.+.|++++|.+++++|
T Consensus 839 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 839 ILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333344444444555555555544444444444444444444445555554444444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2e-20 Score=156.96 Aligned_cols=258 Identities=17% Similarity=0.132 Sum_probs=210.7
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCch---HHHHHHH
Q 040965 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS---VFMGTAL 107 (311)
Q Consensus 32 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 107 (311)
....+...|++++|+..|.++.+. .|+. .++..+...+. ..|++++|..+++.+.+.+..++ ..++..+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKV----DPETVELHLALGNLFR---RRGEVDRAIRIHQNLLSRPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhc----CcccHHHHHHHHHHHH---HcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 455567889999999999999984 4544 45555554333 37779999999999988643222 3567889
Q ss_pred HHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHcc
Q 040965 108 IDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE----ITFVAVLTACARA 180 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~ 180 (311)
+..|.+.|++++|..+|+++.. .+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 193 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALAR 193 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999955 46778999999999999999999999999886533322 2455677788899
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--cchHHHHHHHHHhcCChhHHHHH
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD--ASVLGALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 257 (311)
|++++|...|+++.+. .+.+...+..++..+.+.|++++|.++++++ ...|+ ..++..++.+|...|++++|...
T Consensus 194 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 194 GDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred CCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999864 2234567788889999999999999999998 43454 35678888999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 258 GRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
++++.+..|+.. .+..++..+.+.|++++|..+++++.+..
T Consensus 272 l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 272 LRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 999999999875 56889999999999999999999988764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-20 Score=162.89 Aligned_cols=157 Identities=13% Similarity=0.029 Sum_probs=70.4
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH----HHHHHHHhhccCCCccchhhHHHHHHHHH
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL----GLELFHSMLGKFEVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (311)
..++...|++++|...++++.+.. +.+...+..+...+...|++++ |...|+++++. .+.+...+..+...+.
T Consensus 219 ~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~ 295 (656)
T PRK15174 219 VDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALI 295 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHH
Confidence 344444455555555554444432 1133344444444444554443 44444444432 1112334444445555
Q ss_pred hcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 215 RAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
..|++++|...+++. ...|+. ..+..+...+...|++++|...++++.+..|.+...+..++.++...|++++|...|
T Consensus 296 ~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 296 RTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555555555444 223322 233333444445555555555555555544444333333444445555555555555
Q ss_pred HHHHHc
Q 040965 293 KAMVEA 298 (311)
Q Consensus 293 ~~m~~~ 298 (311)
++..+.
T Consensus 376 ~~al~~ 381 (656)
T PRK15174 376 EHYIQA 381 (656)
T ss_pred HHHHHh
Confidence 554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-19 Score=155.84 Aligned_cols=290 Identities=10% Similarity=-0.022 Sum_probs=234.5
Q ss_pred hhhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 78 (311)
+..+.+.|++++|..+++.... .+...+..++.+....|++++|...|+++.+ ..|+.......+.. .+..
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~----~~P~~~~a~~~la~--~l~~ 122 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLA----VNVCQPEDVLLVAS--VLLK 122 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHH----hCCCChHHHHHHHH--HHHH
Confidence 4457789999999999998843 2566777788888899999999999999998 55665444333321 2334
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cc-hHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV--IK-DVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. +.+...+..+...+...|++++|...++.+. .| +...+..+ ..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 788999999999999874 4467788889999999999999999998773 23 33344333 3478899999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH----HHHHHHhC-C
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE----AKEFMRSM-P 230 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~~~~-~ 230 (311)
+.+.+....++......+..++...|++++|...++++... .+.+...+..+...|...|++++ |...|++. .
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 99887643345555566677889999999999999999864 23356678889999999999986 79999988 5
Q ss_pred CCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 231 FEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 231 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
..|+ ...+..+...+...|++++|...++++.+..|+++..+..++.++.+.|++++|...++++.+.+..
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~ 350 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV 350 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 5665 4677888888999999999999999999999999989999999999999999999999999876543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.4e-20 Score=151.71 Aligned_cols=286 Identities=14% Similarity=0.143 Sum_probs=184.4
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
+.+-..|+++.|+.+++.+++ | .+..|..+..++...|+.+.|.+.|.+.++ +.|+.....+-+... +...
T Consensus 124 N~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq----lnP~l~ca~s~lgnL--lka~ 197 (966)
T KOG4626|consen 124 NILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ----LNPDLYCARSDLGNL--LKAE 197 (966)
T ss_pred HHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh----cCcchhhhhcchhHH--HHhh
Confidence 566788999999999999854 3 567999999999999999999999999988 667655544332211 1114
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK----------------------------- 130 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------------------- 130 (311)
|++++|...+.+.++... --...|+.|...+-.+|++..|+..|++.++-
T Consensus 198 Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~ 276 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYL 276 (966)
T ss_pred cccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHH
Confidence 445555555554444321 11234444444444444444444444444222
Q ss_pred --------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc
Q 040965 131 --------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKFEVVP 201 (311)
Q Consensus 131 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 201 (311)
....+..+...|-.+|+.+.|+..|++..+. .|+ ...|+.|..++-..|++.+|.+.+.+.+.- .|
T Consensus 277 rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l---~p 351 (966)
T KOG4626|consen 277 RALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL---CP 351 (966)
T ss_pred HHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh---CC
Confidence 3344444555555566666666666666554 443 456777777777777777777777777643 22
Q ss_pred -chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 202 -IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 202 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
.....+.|...|...|.+++|..+|... .+.|.- ..++.|...|..+|++++|...|++++++.|.-..+|..++..
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt 431 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNT 431 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchH
Confidence 2345666777777777777777777666 555543 5566677777777777777777777777777777777777777
Q ss_pred HhccchhHHHHHHHHHHHHccC
Q 040965 279 HAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|...|+.+.|...+.+.+..+.
T Consensus 432 ~ke~g~v~~A~q~y~rAI~~nP 453 (966)
T KOG4626|consen 432 YKEMGDVSAAIQCYTRAIQINP 453 (966)
T ss_pred HHHhhhHHHHHHHHHHHHhcCc
Confidence 7777777777777776665443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-18 Score=149.16 Aligned_cols=288 Identities=14% Similarity=0.044 Sum_probs=223.7
Q ss_pred hhhhhcCChHHHHHHHHHh--ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 79 (311)
+.|.+.|++++|+..|++. ..|+...|..+..+|.+.|++++|++.++..++ ..|+. ..+..+-.++.. .
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~----l~p~~~~a~~~~a~a~~~---l 207 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALE----LDPDYSKALNRRANAYDG---L 207 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHH----cCCCCHHHHHHHHHHHHH---c
Confidence 4577889999999999998 456788899999999999999999999999988 45654 445544444333 5
Q ss_pred CcchhHHHHHHHHhhccC-----------------------------CchHHHHHHH-----------------------
Q 040965 80 GGLYLGKQVHGYILRNEI-----------------------------VLSVFMGTAL----------------------- 107 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~-----------------------------~~~~~~~~~l----------------------- 107 (311)
|++++|...+......+. +++...+..+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 668888765543321110 0000000000
Q ss_pred -------HHHH------hhcCCHHHHHHHHHHccc-----c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cH
Q 040965 108 -------IDLY------GKVGCLERAIRVFKSMVI-----K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NE 167 (311)
Q Consensus 108 -------~~~~------~~~g~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~ 167 (311)
+... ...+++++|.+.|++... | ....|..+...+...|++++|+..+++..+. .| ..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~ 365 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVT 365 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcH
Confidence 0000 122578899999988853 2 4567888888999999999999999998876 44 46
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 245 (311)
..|..+...+...|++++|...|+++++. .+.+..+|..+...+...|++++|.+.|++. ...|+ ...+..+...+
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 68888888999999999999999999864 2334678889999999999999999999998 55564 46677777889
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.+.|++++|...++++++..|+++..+..++.++...|++++|.+.|++..+....
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999998876543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=146.77 Aligned_cols=281 Identities=14% Similarity=0.143 Sum_probs=172.3
Q ss_pred cCChHHHHHHHHHhcc--cc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcch
Q 040965 8 NGDMDSAILLFENMLK--RD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~ 83 (311)
.|++.+|...+.+.+. |. ..+|+.|...+-..|+.-.|++.|++..+ +.|+- ..|..|-..+.. .+.++
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk----ldP~f~dAYiNLGnV~ke---~~~~d 269 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK----LDPNFLDAYINLGNVYKE---ARIFD 269 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc----CCCcchHHHhhHHHHHHH---Hhcch
Confidence 3444444444444422 21 23566666666666666666666666665 44442 233333332222 23366
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
.|...+.+..... +-...++..+...|...|.++-|+..+++.++. -...|+.|..++-..|+..+|...|.+...
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 6666666655542 223455556666666667777777777666332 345677777777777777777777776665
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-ch
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SV 237 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~ 237 (311)
.. +--....+.|...+...|.++.|..+|....+ +.|. ...++.|...|-.+|++++|...|++. .++|+. ..
T Consensus 349 l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda 424 (966)
T KOG4626|consen 349 LC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADA 424 (966)
T ss_pred hC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHH
Confidence 42 22345666677777777777777777777663 3443 345666777777777777777777766 666654 56
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|+.+...|...|+.+.|.+.+.+++..+|.-..++..|+..|...|+..+|+.-+++..+...
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 666666777777777777777777777777666777777777777777777777776665443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-17 Score=146.33 Aligned_cols=216 Identities=9% Similarity=0.007 Sum_probs=135.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...+++.++.. +.+...|..+..++...|++++|+..|+++.. .+...|..+...+...|++++|...|
T Consensus 344 ~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 422 (615)
T TIGR00990 344 KGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDY 422 (615)
T ss_pred cCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555555432 11234455555555556666666666655522 14556666666666677777777777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD 234 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 234 (311)
++..+.. +.+...+..+...+.+.|++++|+..|++.++. .+.+...++.+..++...|++++|.+.|++. ...|+
T Consensus 423 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 423 QKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 7666542 224555666666677777777777777777643 2223556777777777788888888877775 33343
Q ss_pred c-chH-------HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 235 A-SVL-------GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 235 ~-~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
. ..+ +.....+...|++++|..+++++++.+|++..++..++.++.+.|++++|.+.|++..+.
T Consensus 500 ~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 500 TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1 111 111112334578888888888888888887777888888888888888888888877654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-17 Score=154.51 Aligned_cols=287 Identities=11% Similarity=0.077 Sum_probs=189.6
Q ss_pred hhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHH---------HH
Q 040965 4 GYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV---------LS 71 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l---------l~ 71 (311)
.+...|++++|+..|++... | +...+..+..++.+.|++++|+..|++..+..+. .++...+..+ +.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~-~~~~~~~~~ll~~~~~~~~~~ 356 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH-SSNRDKWESLLKVNRYWLLIQ 356 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ccchhHHHHHHHhhhHHHHHH
Confidence 45678999999999999843 3 6789999999999999999999999999874411 1111222222 11
Q ss_pred HhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHH------------
Q 040965 72 SCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWN------------ 136 (311)
Q Consensus 72 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~------------ 136 (311)
......+.|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.. | +...+.
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 1112234788999999999999875 34566777889999999999999999998843 2 222222
Q ss_pred ------------------------------HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHH
Q 040965 137 ------------------------------AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186 (311)
Q Consensus 137 ------------------------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 186 (311)
.+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 12344556799999999999988763 22566777888889999999999
Q ss_pred HHHHHHhhccCCCccchhhHHHH--------------------------------------------HHHHHhcCCHHHH
Q 040965 187 LELFHSMLGKFEVVPIMEHYGCV--------------------------------------------VDLLGRAGLLSEA 222 (311)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~l--------------------------------------------~~~~~~~g~~~~A 222 (311)
...++++.+.... +...+..+ ...+...|++++|
T Consensus 515 ~~~l~~al~~~P~--~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA 592 (1157)
T PRK11447 515 DALMRRLAQQKPN--DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA 592 (1157)
T ss_pred HHHHHHHHHcCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence 9999988754221 12122111 2223334444444
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 223 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.++++.- +++...+..+...+...|++++|...|+++++..|+++.++..++.+|...|++++|.+.++...+
T Consensus 593 ~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 593 EALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 4444421 123334444555566666666666666666666666666666666666666666666666665544
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-17 Score=152.04 Aligned_cols=285 Identities=13% Similarity=0.088 Sum_probs=163.8
Q ss_pred hhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhh-----
Q 040965 4 GYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCA----- 74 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~----- 74 (311)
.+.+.|++++|+..|+++.. | +...+..+...+...|++++|++.|+++.+ ..|+. ..+..+...+.
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~----~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALR----MDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCHH
Confidence 45688999999999999843 3 567888899999999999999999999987 44543 23332222211
Q ss_pred ----------------------------------hhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHH
Q 040965 75 ----------------------------------GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERA 120 (311)
Q Consensus 75 ----------------------------------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 120 (311)
.+...|++++|.+.+++.++.. +.+...+..+...|.+.|++++|
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 0112455666666666666553 22445555566666666666666
Q ss_pred HHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH---------HHHHHHHHHHHccccHHHHHH
Q 040965 121 IRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE---------ITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 121 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---------~~~~~l~~~~~~~~~~~~a~~ 188 (311)
+..++++.. | +...+..+...+...+++++|...++.+......++. ..+......+...|+.++|..
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 666666522 2 3333333333344455555555554443211111110 001122333444455555554
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
+++. .+++...+..+...+.+.|++++|.+.|++. ...| +...+..++..+...|++++|.+.++++.+..|
T Consensus 595 ~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p 668 (1157)
T PRK11447 595 LLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN 668 (1157)
T ss_pred HHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence 4441 1223334555666666666666666666666 3333 345555666666666666666666666666666
Q ss_pred CchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 267 KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
++...+..++.++...|++++|.++++++....
T Consensus 669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 665566666666666666666666666666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=142.62 Aligned_cols=258 Identities=17% Similarity=0.137 Sum_probs=113.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHH
Q 040965 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL 110 (311)
Q Consensus 31 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (311)
.+...+.+.|++++|++++++..... .+|+...|-.++...+.. .++.+.|.+.++++...+.. +...+..++..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~--~~~~~~~~~~~~a~La~~--~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l 87 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKI--APPDDPEYWRLLADLAWS--LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccc--cccccccccccccccccc--cccccccccccccccccccc-ccccccccccc
Confidence 45778889999999999996654432 256666665554433222 55699999999999987633 66677777777
Q ss_pred HhhcCCHHHHHHHHHHc--ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHccccHHHHH
Q 040965 111 YGKVGCLERAIRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
...+++++|.+++.+. ..+++..+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|.
T Consensus 88 -~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 -LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred -cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7899999999998877 33466778888899999999999999999987543 3457778888899999999999999
Q ss_pred HHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 188 ELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
+.+++.++. .| |......++..+...|+.+++.++++.. ..+.|...+..+..++...|+.++|...++++.+.
T Consensus 167 ~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 167 RDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc
Confidence 999999964 55 4667888999999999999988888777 22456677888999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 265 QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.|+++.....+++++...|+.++|.++.++..+
T Consensus 244 ~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp STT-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999887643
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-15 Score=136.94 Aligned_cols=286 Identities=12% Similarity=0.083 Sum_probs=135.4
Q ss_pred hhhhcCChHHHHHHHHHhc--cc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENML--KR-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.+.+.|++++|..+|++.. .| +...+..++..+...|++++|+..+++..+ ..|+...+..+..++ ...|
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~----~~P~~~~~~~la~~l---~~~g 130 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVS----GAPDKANLLALAYVY---KRAG 130 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHH---HHCC
Confidence 4555666666666666642 12 344555566666666666666666666655 233333322222211 1245
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc-------------------------------
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI------------------------------- 129 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------------------- 129 (311)
+.++|...++++.+..+. +...+..+..++...|+.++|++.++.+..
T Consensus 131 ~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 566666666666555322 333333344444444444433333331110
Q ss_pred ------------------chHh---hHH----HHHHHHHcCCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHccccH
Q 040965 130 ------------------KDVC---TWN----AMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLV 183 (311)
Q Consensus 130 ------------------~~~~---~~~----~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~ 183 (311)
.++. .+. ..+..+...|++++|+..|+++.+.+.+ |+. ....+..+|...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 0000 000 0012233445666666666666554321 221 111234456666666
Q ss_pred HHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-------------Cc---chHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-------------DA---SVLGALLGA 244 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~---~~~~~l~~~ 244 (311)
++|+..|+++.......+ .......+..++...|++++|.++++.+ ...| +. ..+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 666666666553211110 0123344444555666666666666555 2112 11 112233344
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+...|+.++|+..++++....|.+...+..++..+...|++++|++.+++....
T Consensus 369 l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 555566666666666665555555555555555555566666666665555543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-15 Score=137.24 Aligned_cols=292 Identities=9% Similarity=0.050 Sum_probs=212.3
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHH-HHHHhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS-VLSSCAGLV 77 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~-ll~~~~~~~ 77 (311)
...+.+.|++++|+..+++... | +.. +..+..++...|++++|+..++++.+ ..|+...... +..++.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~----~~P~~~~~~~~la~~l~--- 161 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP----RAPQTQQYPTEYVQALR--- 161 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHH---
Confidence 3467789999999999999843 3 556 88889999999999999999999988 4565543322 222111
Q ss_pred hcCcc----------------------------------------------hhHHHHHHHHhhc-cCCchHH-HH----H
Q 040965 78 NEGGL----------------------------------------------YLGKQVHGYILRN-EIVLSVF-MG----T 105 (311)
Q Consensus 78 ~~~~~----------------------------------------------~~a~~~~~~~~~~-~~~~~~~-~~----~ 105 (311)
..+.. ++|++.++.+.+. ...|+.. .+ .
T Consensus 162 ~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 162 NNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred HCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 11112 4455555565543 1122211 11 1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHcccch---H-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHH
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVIKD---V-CTWNAMISSLASNSREKEALVMFDEMKEKGLRA---NEITFVAVLTACA 178 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~ 178 (311)
..+..+...|++++|+..|+++...+ + .....+..+|...|++++|+.+|+++.+..... .......+..++.
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 11234467799999999999996542 1 122335778999999999999999987653111 1345666777889
Q ss_pred ccccHHHHHHHHHHhhccCC----------Cccc---hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFE----------VVPI---MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
..|++++|..+++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+..
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999986411 1122 224556778899999999999999998 4345 4567778888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.+...|++++|++.++++++..|++...+..++..+.+.|++++|..+++++++....
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 8999999999999999999999999999999999999999999999999999886543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=132.42 Aligned_cols=279 Identities=12% Similarity=0.031 Sum_probs=218.0
Q ss_pred ChHHHHHHHHHhccc--c-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHH
Q 040965 10 DMDSAILLFENMLKR--D-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86 (311)
Q Consensus 10 ~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~ 86 (311)
+..+|...|..++.. | ..+...+.++|...+++++|.++|+.+.+..+-..-+...|.+.+- .+. -+-++
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW---HLq----~~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW---HLQ----DEVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH---HHH----hhHHH
Confidence 457788888886332 3 3466789999999999999999999998854322235677777773 222 22233
Q ss_pred HHHHH-HhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 87 QVHGY-ILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
..+.+ +.+. -+.++.+|..+.++|.-+++.+.|++.|++.+.- ...+|+.+..-+.....+|.|...|+.....
T Consensus 407 s~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 407 SYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 33332 3332 2556899999999999999999999999999554 5578888888999999999999999987654
Q ss_pred CCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchH
Q 040965 163 LRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVL 238 (311)
Q Consensus 163 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 238 (311)
.| +-..|..+...|.+.++.+.|+-.|+++.+ +.| +.+....+...+.+.|+.++|+++++++ ...| |+..-
T Consensus 485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred -CchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 33 344666677789999999999999999984 555 4556677788899999999999999999 4444 44443
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
-.-+..+...+++++|+..++++.+..|++...|..++..|.+.|+.+.|..-|--+.+.+.+
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 444556778999999999999999999999999999999999999999999999887765554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2e-15 Score=126.16 Aligned_cols=277 Identities=12% Similarity=0.071 Sum_probs=210.3
Q ss_pred cCChHHHHHHHHHhccc--cHHH-HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 8 NGDMDSAILLFENMLKR--DVVS-WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
.|++++|++......+. ++.. |-....+..+.|+++.|.+.+.++.+ ..|+......+..+-... ..|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~----~~~~~~~~~~l~~a~l~l-~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE----LADNDQLPVEITRVRIQL-ARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCcchHHHHHHHHHHHH-HCCCHHH
Confidence 59999999988877543 2333 33334555899999999999999987 567765444333222222 3788999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hH--------hhHHHHHHHHHcCCCHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DV--------CTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~l~~~~~~~~~~~~a~~ 153 (311)
|...++.+.+.. +-++.....+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999886 446788888999999999999999999988533 11 234444444445556667777
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
+++.+.+. .+.+......+...+...|+.++|...+++..+. .|+... .++.+....++.+++.+.++.. ...
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC
Confidence 77766443 2447778888999999999999999999999864 444422 2334444669999999999988 556
Q ss_pred CCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 233 PDAS-VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 233 p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
|+.. ....+...+...+++++|.+.|+++.+..|++. .+..+..++.+.|+.++|..++++-..
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7654 566778889999999999999999999999986 788999999999999999999987654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-15 Score=134.25 Aligned_cols=286 Identities=10% Similarity=0.058 Sum_probs=211.3
Q ss_pred hhhcCChHHHHHHHHHhcc-c-----cHHHHHHHHHHHHhcCC---HhHHHHH----------------------HHHhh
Q 040965 5 YVKNGDMDSAILLFENMLK-R-----DVVSWTSIINGFVRNGC---FGEAICV----------------------FKNMM 53 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~~~~~~~g~---~~~A~~~----------------------~~~~~ 53 (311)
..+.|+.++|..+|+.... + +...-.-++..|.+.+. ..++..+ ++...
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 4678999999999998844 2 23344567777777766 3333333 11111
Q ss_pred cCCCCCCC--chHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--
Q 040965 54 GNVNLVRP--NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI-- 129 (311)
Q Consensus 54 ~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 129 (311)
..-+..++ +...|..+-.++. .++.++|...+.+..... |+......+...+...|++++|...|+++..
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~----~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~ 539 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYR----DTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD 539 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHH----hCCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC
Confidence 11100122 3444444443332 356888999888877664 4444444455566789999999999998733
Q ss_pred chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHH
Q 040965 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209 (311)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 209 (311)
++...+..+..++.+.|++++|...+++..+.+ +++...+..+.......|++++|...+++.++ ..|+...+..+
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~L 615 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVAR 615 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHH
Confidence 344556777888899999999999999998764 22334444444455567999999999999985 46677889999
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHH
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 287 (311)
..++.+.|++++|.+.+++. ...|+. ..+..+...+...|++++|...++++++..|+++.++..++.++...|++++
T Consensus 616 A~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 616 ATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999998 566755 5566666789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccC
Q 040965 288 ATDLRKAMVEAGI 300 (311)
Q Consensus 288 A~~~~~~m~~~~~ 300 (311)
|...+++..+...
T Consensus 696 A~~~l~~Al~l~P 708 (987)
T PRK09782 696 TQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999987653
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.6e-15 Score=133.70 Aligned_cols=262 Identities=10% Similarity=0.003 Sum_probs=210.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...|..+..++.. +++++|+..+.+... ..|+... .+..++. +...|++++|...++++... +|+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~----~~Pd~~~--~L~lA~a-l~~~Gr~eeAi~~~rka~~~--~p~~~a~ 545 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQ----RQPDAWQ--HRAVAYQ-AYQVEDYATALAAWQKISLH--DMSNEDL 545 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHH----hCCchHH--HHHHHHH-HHHCCCHHHHHHHHHHHhcc--CCCcHHH
Confidence 56788888888877 899999999988887 4576543 2222222 22378899999999998665 3344455
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccchHhhHH---HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWN---AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
..+...+.+.|++++|...+++....++.... .+.......|++++|...+++..+. .|+...+..+..++.+.|
T Consensus 546 ~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG 623 (987)
T PRK09782 546 LAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRH 623 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCC
Confidence 67788899999999999999988655433333 3334445569999999999999876 567888999999999999
Q ss_pred cHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHH
Q 040965 182 LVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVG 258 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 258 (311)
+.++|...+++.+.. .| +...+..+..++...|++++|++.+++. ...|+ ...+..+..++...|++++|...+
T Consensus 624 ~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l 700 (987)
T PRK09782 624 NVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYA 700 (987)
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999864 44 4567888888999999999999999998 55664 467788888999999999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+++++..|++..+.........+..+++.|.+-+++--..++.
T Consensus 701 ~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 701 RLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 9999999999888889999999999999999988876655443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-14 Score=110.75 Aligned_cols=295 Identities=16% Similarity=0.168 Sum_probs=219.6
Q ss_pred cCChHHHHHHHHHhccccHH---HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 8 NGDMDSAILLFENMLKRDVV---SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
..+.++|.++|-+|.+.|+. +.-+|.+.|.+.|..++|+++-..+.++. --+...-...+...-..+...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp--dlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP--DLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC--CCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46789999999999766544 55688999999999999999999987643 11222222223222233444777999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHH--------HHHHHHHcCCCHHHHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWN--------AMISSLASNSREKEALVMFD 156 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~a~~~~~ 156 (311)
|+++|..+.+.+ .--......|+..|-...+|++|+++-+++.+-+...|+ -+...+....+.+.|..+++
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998855 223455677899999999999999999888655444443 34455566789999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
+..+.+ +-.+..-..+.+.....|+++.|.+.++.+.++ +..--..+...|..+|...|+.++....+.++ ...++.
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 988774 224455556677889999999999999999877 44445667888999999999999999999887 556777
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh---ccchhHHHHHHHHHHHHccCCCCCcccc
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA---GLERWNRATDLRKAMVEAGIRKIPAYSL 308 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 308 (311)
..-..+...-....-.+.|...+.+-+...|+.. .+..|++.-. ..|.+.+-..+++.|...-++..|.+.+
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~-gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMR-GFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHH-HHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 7777776666667777888888888887888765 5556665543 3456888888999998887777766543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-14 Score=126.73 Aligned_cols=288 Identities=11% Similarity=0.063 Sum_probs=183.5
Q ss_pred hhhhhhcCChHHHHHHHHHhcccc-HHHHH--HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLKRD-VVSWT--SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCAGLV 77 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~~~-~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~ 77 (311)
+..+...|+.++|+..+++...|+ ...+. .+...+...|++++|+++|+++.+. .|+.. .+..+.. ...
T Consensus 75 l~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~----dP~n~~~l~gLa~---~y~ 147 (822)
T PRK14574 75 LQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK----DPTNPDLISGMIM---TQA 147 (822)
T ss_pred HHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHH---HHh
Confidence 345666777777777777776552 22233 3355677778888888888888773 44442 2222222 222
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhh--------------------
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCT-------------------- 134 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~-------------------- 134 (311)
..++.++|++.++++.+.. |+...+..++..+...++..+|++.++++.. | +...
T Consensus 148 ~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l 225 (822)
T PRK14574 148 DAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRL 225 (822)
T ss_pred hcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 3566778888887777663 3444444444444445555557777776611 1 0000
Q ss_pred ------------------------------------------------HH---------------------HHHHHHHcC
Q 040965 135 ------------------------------------------------WN---------------------AMISSLASN 145 (311)
Q Consensus 135 ------------------------------------------------~~---------------------~l~~~~~~~ 145 (311)
+. -.+-++...
T Consensus 226 ~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r 305 (822)
T PRK14574 226 AKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVR 305 (822)
T ss_pred HHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHh
Confidence 00 012234455
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCC----CccchhhHHHHHHHHHhcCCHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE----VVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
|++.++++.|+.|...+.+....+-..+.++|...+++++|..+++.+....+ ..++......|.-+|...+++++
T Consensus 306 ~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 306 HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 77777777888777776554556777788888888888888888888765421 12233334677788888888888
Q ss_pred HHHHHHhC-CCCC-------------Cc---chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 222 AKEFMRSM-PFEP-------------DA---SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 222 A~~~~~~~-~~~p-------------~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
|..+++++ ...| |. ..+..++..+.-.|+..+|++.++++....|.+......+...+...|.
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~ 465 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL 465 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 88888877 1112 21 1123345567778888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHHc
Q 040965 285 WNRATDLRKAMVEA 298 (311)
Q Consensus 285 ~~~A~~~~~~m~~~ 298 (311)
..+|...++.....
T Consensus 466 p~~A~~~~k~a~~l 479 (822)
T PRK14574 466 PRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHHHHhhh
Confidence 88888888666544
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-14 Score=118.04 Aligned_cols=282 Identities=12% Similarity=0.019 Sum_probs=199.2
Q ss_pred hhcCChHHHHHHHHHhcc--cc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcc
Q 040965 6 VKNGDMDSAILLFENMLK--RD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 82 (311)
...|+++.|.+.+.+..+ |+ ...+-....+..+.|+++.|.+.+.+..+ ..|+......+..+-..+. .|++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~----~~p~~~l~~~~~~a~l~l~-~~~~ 169 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAE----LAGNDNILVEIARTRILLA-QNEL 169 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCcCchHHHHHHHHHHHH-CCCH
Confidence 357999999999988744 33 33445556778888999999999999876 3455432111111111222 7789
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHH----HHHHHHHcCCCHHHHHHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWN----AMISSLASNSREKEALVMF 155 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~----~l~~~~~~~~~~~~a~~~~ 155 (311)
+.|...++.+.+.. |-+..+...+...+...|++++|.+.+..+.+. +...+. .....+...+..+++.+.+
T Consensus 170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 99999999999986 446678888999999999999999999988533 333221 1111223333444444555
Q ss_pred HHHHHcCC---CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhh---HHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 156 DEMKEKGL---RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEH---YGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 156 ~~m~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
..+.+... +.+...+..+...+...|+.++|.+.+++.++. .|+... .....-.....++.+.+.+.+++.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~ 325 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ 325 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence 55554421 127788888999999999999999999999975 344321 111222233457888898888887
Q ss_pred -CCCCCcc---hHHHHHHHHHhcCChhHHHHHHH--HHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 230 -PFEPDAS---VLGALLGACKIHGAVDLCHEVGR--RLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 230 -~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
...|+.. ...++...+.+.|++++|.+.|+ ...+..|++. .+..++..+.+.|+.++|.+++++-..
T Consensus 326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5556555 45577888999999999999999 4666778775 577999999999999999999998644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-14 Score=119.36 Aligned_cols=254 Identities=9% Similarity=-0.015 Sum_probs=191.8
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH
Q 040965 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117 (311)
Q Consensus 38 ~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 117 (311)
..|++++|.+.+....+.. ++ ...+.++.+.... ..|+.+.+...+.++.+....+...........+...|++
T Consensus 96 ~eGd~~~A~k~l~~~~~~~----~~-p~l~~llaA~aA~-~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA----EQ-PVVNYLLAAEAAQ-QRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc----cc-hHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCH
Confidence 4699999998888765532 22 2333344333323 3888999999999998764333223333447789999999
Q ss_pred HHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHccccHHHHH
Q 040965 118 ERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-------ITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 118 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 187 (311)
+.|...++++.+. ++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999998433 6778889999999999999999999999988655433 23334444444455667777
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
++++.+.+. .+.++.....+...+...|+.++|.+.+++. ...|+.... ++.+....++.+++.+..++..+..|
T Consensus 250 ~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 250 RWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 777777543 3456778888999999999999999999888 544555322 33444566999999999999999999
Q ss_pred CchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 267 KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+++..+..++..+.+.|+|++|.+.|+...+....
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999986543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-16 Score=128.08 Aligned_cols=248 Identities=15% Similarity=0.166 Sum_probs=109.7
Q ss_pred hhhhhcCChHHHHHHHHHh---c--cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENM---L--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV 77 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~---~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~ 77 (311)
..+.+.|++++|.++++.. . ..|...|..+...+...++++.|.+.++++...+. -+...+..++.. .
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~---~~~~~~~~l~~l----~ 88 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK---ANPQDYERLIQL----L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccc----c
Confidence 5677899999999999643 1 22666777788888889999999999999988652 134445555542 2
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc-----cchHhhHHHHHHHHHcCCCHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-----IKDVCTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~ 152 (311)
..+++++|.++++...+.. ++...+..++..+.+.++++++.++++++. +.+...|..+...+.+.|++++|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3777999999998876653 456667788899999999999999999863 346778889999999999999999
Q ss_pred HHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 153 VMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 153 ~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
+.+++..+. .| |......++..+...|+.+++..+++...+. .+.++..+..+..+|...|++++|..+|++. .
T Consensus 167 ~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 167 RDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 999999987 45 5778889999999999999999999998764 3556667889999999999999999999998 4
Q ss_pred CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 231 FEP-DASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 231 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
..| |......+..++...|+.++|..+.+++.+
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 345 667778888999999999999999988764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-14 Score=120.30 Aligned_cols=286 Identities=14% Similarity=0.146 Sum_probs=207.2
Q ss_pred hhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhhcC
Q 040965 5 YVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~ 80 (311)
+.-.|++++|..++.++++. +...|.+|...|-..|+.+++...+-.+.. +.|. ...|..+-. ...+.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH----L~p~d~e~W~~lad---ls~~~~ 221 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH----LNPKDYELWKRLAD---LSEQLG 221 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh----cCCCChHHHHHHHH---HHHhcc
Confidence 33449999999999999654 677999999999999999999988877655 3443 344444443 444577
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchH--------hhHHHHHHHHHcCCCHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV--------CTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~a~ 152 (311)
.+++|.-.|.+.++.. +++....-.-+..|-+.|+...|...|.++...++ ..-...+..+...++.+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7999999999999886 45565555678888999999999999988833211 12223345555566666666
Q ss_pred HHHHHHHHcC-CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc------------------------------------
Q 040965 153 VMFDEMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLG------------------------------------ 195 (311)
Q Consensus 153 ~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------------------------------ 195 (311)
+.++.....+ -..+...++.++..+.+...++.|......+..
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 6666554421 122333444555555555555544444433332
Q ss_pred -------------------------cCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC--CCcchHHHHHHHH
Q 040965 196 -------------------------KFEV--VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE--PDASVLGALLGAC 245 (311)
Q Consensus 196 -------------------------~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~ 245 (311)
. +. .-+...|.-+.++|...|++.+|+++|..+ ..+ .+...|..+..+|
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 1 21 223455777888999999999999999999 222 3456888999999
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
...|.+++|.+.|++++...|++..+-..|...+.+.|+.++|.+.+..|...+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 999999999999999999999999999999999999999999999999877333
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-14 Score=118.55 Aligned_cols=262 Identities=9% Similarity=-0.061 Sum_probs=187.8
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 37 VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 37 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
...|+++.|.+.+.+..+ ..|+...+.. +.+-. ....|+.+.+.+.+.+..+....+...+.......+...|+
T Consensus 95 ~~~g~~~~A~~~l~~~~~----~~~~~~~~~l-laA~a-a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~ 168 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNAD----HAAEPVLNLI-KAAEA-AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNE 168 (409)
T ss_pred HhCCCHHHHHHHHHHHhh----cCCCCHHHHH-HHHHH-HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCC
Confidence 468999999999998876 4465544333 32222 22378899999999998876433333444556888899999
Q ss_pred HHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH---HHccccHHHHHHHH
Q 040965 117 LERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA---CARAQLVELGLELF 190 (311)
Q Consensus 117 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~ 190 (311)
++.|...++.+.+ | +...+..+...+...|++++|.+.+..+.+.++.++......-..+ ....+..+.+.+.+
T Consensus 169 ~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 169 LHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999843 3 6778889999999999999999999999998755433221111122 23333444444455
Q ss_pred HHhhccC--CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHH-HHHH--HHHhcCChhHHHHHHHHHHhc
Q 040965 191 HSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLG-ALLG--ACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 191 ~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~-~l~~--~~~~~g~~~~a~~~~~~~~~~ 264 (311)
..+.+.. ..+.+...+..++..+...|+.++|.+.+++. ...||..... .++. .....++.+.+.+.+++..+.
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 5554431 11236778888999999999999999999998 5566665311 1222 234467889999999999999
Q ss_pred CCCch--hHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 265 QPKHC--GRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 265 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
.|+++ ....+++..+.+.|+|++|.+.|+........|++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~ 370 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA 370 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH
Confidence 99998 78889999999999999999999954443334443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-13 Score=121.22 Aligned_cols=291 Identities=11% Similarity=0.072 Sum_probs=211.8
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
..|...|++++|+++|+++.+ | ++..+..++..+...++.++|++.++++.. ..|+...+..+ ++...+ .
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~----~dp~~~~~l~l--ayL~~~-~ 182 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE----RDPTVQNYMTL--SYLNRA-T 182 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc----cCcchHHHHHH--HHHHHh-c
Confidence 356778999999999999943 3 567777888889999999999999999987 45666665333 322222 3
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhc---------------------------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV--------------------------------------------- 114 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------------------------------- 114 (311)
++..+|++.++++.+.. +.+...+..+.....+.
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 33444777777776654 22333333333333333
Q ss_pred --------------------------------------------CCHHHHHHHHHHcccc----hHhhHHHHHHHHHcCC
Q 040965 115 --------------------------------------------GCLERAIRVFKSMVIK----DVCTWNAMISSLASNS 146 (311)
Q Consensus 115 --------------------------------------------g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~ 146 (311)
|++.++++.|+.+..+ ...+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 3333444444433211 2234556788999999
Q ss_pred CHHHHHHHHHHHHHcC-----CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCC------------Cccch-hhHHH
Q 040965 147 REKEALVMFDEMKEKG-----LRANEITFVAVLTACARAQLVELGLELFHSMLGKFE------------VVPIM-EHYGC 208 (311)
Q Consensus 147 ~~~~a~~~~~~m~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~-~~~~~ 208 (311)
++++|..+|+++.... ..++......|..++...+++++|..+++.+.+... ..||- ..+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 9999999999987643 123444467899999999999999999999986311 11222 23445
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhH
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (311)
++..+...|+..+|++.++++ ...| |......+...+...|.+.+|+..++.+....|++..+....+.++...|+|.
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHH
Confidence 678888999999999999999 3344 66778888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCC
Q 040965 287 RATDLRKAMVEAGIR 301 (311)
Q Consensus 287 ~A~~~~~~m~~~~~~ 301 (311)
+|..+.+.+.+..+.
T Consensus 502 ~A~~~~~~l~~~~Pe 516 (822)
T PRK14574 502 QMELLTDDVISRSPE 516 (822)
T ss_pred HHHHHHHHHHhhCCC
Confidence 999999888765543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-13 Score=107.73 Aligned_cols=274 Identities=14% Similarity=0.217 Sum_probs=202.2
Q ss_pred HHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhcc
Q 040965 17 LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE 96 (311)
Q Consensus 17 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 96 (311)
++-+.......+|..||.++++-...+.|.++|++..+.. .+.+..+||.+|.+.. +....++..+|....
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k--~kv~~~aFN~lI~~~S-------~~~~K~Lv~EMisqk 268 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAK--GKVYREAFNGLIGASS-------YSVGKKLVAEMISQK 268 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhh--heeeHHhhhhhhhHHH-------hhccHHHHHHHHHhh
Confidence 5555556688899999999999999999999999998877 7889999999998543 444488999999999
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHH----Hc----ccchHhhHHHHHHHHHcCCCHHH-HHHHHHHHHHc----CC
Q 040965 97 IVLSVFMGTALIDLYGKVGCLERAIRVFK----SM----VIKDVCTWNAMISSLASNSREKE-ALVMFDEMKEK----GL 163 (311)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~----~~----~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~----~~ 163 (311)
+.||..|+|+++++..+.|+++.|.+.+- +| ++|...+|..+|..+++.++..+ |..++.++... .+
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~f 348 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTF 348 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcc
Confidence 99999999999999999999887766544 44 67899999999999999888754 44555555432 22
Q ss_pred C---C-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCC---Cccc---hhhHHHHHHHHHhcCCHHHHHHHHHhC---C
Q 040965 164 R---A-NEITFVAVLTACARAQLVELGLELFHSMLGKFE---VVPI---MEHYGCVVDLLGRAGLLSEAKEFMRSM---P 230 (311)
Q Consensus 164 ~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~---~ 230 (311)
. | |...|...+..|.+..+.+.|.++..-.....+ +.|+ ..-|..+..+.|.....+.-...|+.| -
T Consensus 349 kp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~ 428 (625)
T KOG4422|consen 349 KPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSA 428 (625)
T ss_pred cCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 2 3 456677888889999999999888776654321 1222 223456667777888888888888888 3
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh---------------------cCCCch--------------------
Q 040965 231 FEPDASVLGALLGACKIHGAVDLCHEVGRRLLE---------------------LQPKHC-------------------- 269 (311)
Q Consensus 231 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~~~~~~-------------------- 269 (311)
.-|+..+...++++....|.++-.-+++..++. ..|.++
T Consensus 429 y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~ 508 (625)
T KOG4422|consen 429 YFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAY 508 (625)
T ss_pred ecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777777777766655555554432 122211
Q ss_pred --------------hHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 270 --------------GRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 270 --------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
...+..+..+.|.|+.++|.+++.-+.+.+
T Consensus 509 e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 509 ESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 234455666788999999999998886543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=107.16 Aligned_cols=199 Identities=13% Similarity=0.019 Sum_probs=165.6
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
.....+..+...+...|++++|...+++.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34567778889999999999999999987432 56778888999999999999999999988764 335677788888
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~ 253 (311)
.+...|++++|...+++..+..........+..+..++...|++++|.+.+++. ...|+ ...+..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999865222334456777888999999999999999988 44444 4677788888999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
|...++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999888887778888899999999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-13 Score=109.85 Aligned_cols=189 Identities=16% Similarity=0.150 Sum_probs=147.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcc---cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMV---IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
|-.+...|....+.++....|++.. +.++.+|..-.+.+.-.+++++|..=|++.+... +-+...|..+..+..+.
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHH
Confidence 4445556666666677777776652 2266778777788888888999999998887753 22567788888888899
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------cchHHHHHHHHHhcCC
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---------ASVLGALLGACKIHGA 250 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---------~~~~~~l~~~~~~~g~ 250 (311)
++++++...|++.+++ ++..+..|+.....+...+++++|.+.|+.. ...|. ..+...++-. .-.++
T Consensus 442 ~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d 518 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKED 518 (606)
T ss_pred HHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhh
Confidence 9999999999999885 4555678999999999999999999999887 44444 1122222222 23489
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
+..|..+++++++++|....+|..|+....+.|+.++|+++|++-.
T Consensus 519 ~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 519 INQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999998999999999999999999999998754
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-13 Score=108.51 Aligned_cols=270 Identities=11% Similarity=0.106 Sum_probs=205.7
Q ss_pred hhhhcCChHHHHHHHHHhccccHHH----HHHHHHH-HHh-cCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHH-hhhh
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVS----WTSIING-FVR-NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSS-CAGL 76 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~----~~~l~~~-~~~-~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~-~~~~ 76 (311)
-|.++|+++.|++++.-..+.|..+ -+.|-.. |.+ -.++..|.++-+.....+ .+.-..+..- -..+
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d------ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID------RYNAAALTNKGNIAF 501 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc------ccCHHHhhcCCceee
Confidence 4778999999999888775553222 2222222 222 346777877777765432 2222222210 0112
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc---ccchHhhHHHHHHHHHcCCCHHHHHH
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM---VIKDVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
. .|++++|...+.+.+..........|| +.-.+-..|++++|+++|-++ ...+..+.-.+.+.|-...+..+|++
T Consensus 502 ~-ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 A-NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred e-cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 2 788999999999999876444444444 555678899999999999877 44577788888999999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
++.+.... ++.|......|...|-+.|+-.+|.+.+-.--+ -++-+..+...|..-|....-+++|+.+|++. -+.
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq 656 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ 656 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 99876654 455788999999999999999999988655443 34557888999999999999999999999998 678
Q ss_pred CCcchHHHHHHH-HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 233 PDASVLGALLGA-CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 233 p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
|+..-|..++.. +.+.|++++|.++++...+..|.+..+...|++.+...|-
T Consensus 657 p~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 657 PNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999999988866 5679999999999999999999999999999999887763
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-13 Score=107.30 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=138.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (311)
.|.-++.+.|+-.++.++|..+|++..+.+ +-....|+.+..-|....+...|..-++.+.+- .+.|-..|-.|.++
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQA 407 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhHH
Confidence 344455667778889999999999998874 335678888888999999999999999999853 34477899999999
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHH
Q 040965 213 LGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATD 290 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 290 (311)
|.-.+-+.=|+-+|++. ..+| |...|.+|..+|.+.++.++|++.|+++...+-.+..++..|+..|.+.++.++|..
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999998 6666 668899999999999999999999999998776666799999999999999999999
Q ss_pred HHHHHHH
Q 040965 291 LRKAMVE 297 (311)
Q Consensus 291 ~~~~m~~ 297 (311)
.|++..+
T Consensus 488 ~yek~v~ 494 (559)
T KOG1155|consen 488 YYEKYVE 494 (559)
T ss_pred HHHHHHH
Confidence 9988766
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.7e-14 Score=120.06 Aligned_cols=211 Identities=12% Similarity=0.081 Sum_probs=171.6
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc---------------------------------
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV--------------------------------- 128 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------------------------------- 128 (311)
..+|...|+.+.. .+.-+.++...+..+|...+++++|+++|+.+.
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 5666666666333 233334566666777777777777777776651
Q ss_pred ----cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-
Q 040965 129 ----IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI- 202 (311)
Q Consensus 129 ----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 202 (311)
+..+.+|-++.++|.-+++++.|++.|++..+. .| ..++|+.+..-+.....+|.|...|+..+ ++.|.
T Consensus 414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rh 488 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRH 488 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchh
Confidence 115678999999999999999999999999876 45 67899999999999999999999999998 44443
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
-..|..|...|.++++++.|+-.|+++ .+.|. ......+...+-+.|+.|+|+++++++..++|.++-+-..-+..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 356677888999999999999999998 77774 4556666777889999999999999999999999988889999999
Q ss_pred ccchhHHHHHHHHHHHHc
Q 040965 281 GLERWNRATDLRKAMVEA 298 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~ 298 (311)
..+++++|...++++++.
T Consensus 569 ~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKEL 586 (638)
T ss_pred hhcchHHHHHHHHHHHHh
Confidence 999999999999999874
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.4e-12 Score=99.97 Aligned_cols=282 Identities=13% Similarity=0.122 Sum_probs=202.2
Q ss_pred cCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 8 NGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
.|+|.+|+++..+-.+. ....|-.-+.+.-+.|+.+.+-.++.+..+ ..+|.....-+..+ -.+..+|+.+.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae----~~~~~~l~v~ltra-rlll~~~d~~a 171 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAE----LAGDDTLAVELTRA-RLLLNRRDYPA 171 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhc----cCCCchHHHHHHHH-HHHHhCCCchh
Confidence 58899998888776333 344566666777788999999999998876 33343333222222 23333888899
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhhHHHHHHHHHcCCCHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
|..-..++.+.+ +.++.+......+|.+.|++.....++.++.+. ...+|..+++-....+..+.-..
T Consensus 172 A~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~ 250 (400)
T COG3071 172 ARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKT 250 (400)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHH
Confidence 999888888876 345677788889999999999999998888444 23467777777666666666666
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
.++..... ..-+...-.+++.-+...|+.++|.++..+.+++ +.+|+ ...++ .+.+.++...-++..++. ...
T Consensus 251 ~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 251 WWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhC
Confidence 66665433 2335556667777888899999999999988877 66665 22222 234566666655555554 222
Q ss_pred C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCC
Q 040965 233 P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 233 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 302 (311)
| ++..+..|...|.+.+.+.+|...|+.+++..|+.. .|..+..++.+.|+.++|.+++++-.-.-.+|
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 2 336677788889999999999999999998888765 89999999999999999999999887554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.9e-13 Score=105.64 Aligned_cols=255 Identities=13% Similarity=0.087 Sum_probs=189.8
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHH
Q 040965 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL 110 (311)
Q Consensus 31 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (311)
....+.-...++++|+.+|+++.+.++=---|..+|+.++-.- . -...+..+.+-.-.=.+-.+.|...+.+.
T Consensus 267 ~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~-----~--~~skLs~LA~~v~~idKyR~ETCCiIaNY 339 (559)
T KOG1155|consen 267 QIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK-----N--DKSKLSYLAQNVSNIDKYRPETCCIIANY 339 (559)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH-----h--hhHHHHHHHHHHHHhccCCccceeeehhH
Confidence 3344455667888888888888776531112556776666421 1 11122222222111112234566777888
Q ss_pred HhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHH
Q 040965 111 YGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
|+-.++.++|...|+...+. ....|+.+..-|...++...|++-|+...+-. +.|-..|-.+..+|.-.+.+.=|+
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHH
Confidence 88999999999999988554 45789999999999999999999999998763 448899999999999999999999
Q ss_pred HHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-
Q 040965 188 ELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE- 263 (311)
Q Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~- 263 (311)
-+|++... ++| |...|.+|.++|.+.++.++|+..|... .-..+...+..|...|-+.++.++|...|++.++
T Consensus 419 yYfqkA~~---~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 419 YYFQKALE---LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHh---cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999984 455 6789999999999999999999999998 3245668899999999999999999999998876
Q ss_pred ------cCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 264 ------LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 264 ------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
..|....+-..|..-+.+.+++++|..+.....
T Consensus 496 ~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 496 SELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence 334444455567777888888888877655443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-12 Score=112.97 Aligned_cols=261 Identities=10% Similarity=-0.011 Sum_probs=181.8
Q ss_pred cHHHHHHHHHHHHh-----cCCHhHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhh------hcCcchhHHHHHHHH
Q 040965 25 DVVSWTSIINGFVR-----NGCFGEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLV------NEGGLYLGKQVHGYI 92 (311)
Q Consensus 25 ~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~------~~~~~~~a~~~~~~~ 92 (311)
+...|...+.+-.. .+.+++|..+|++..+ ..|+... |..+..++.... ..+++++|...+++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~----ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN----MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh----cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 45555555555322 2346799999999998 5676543 333332222221 235588999999999
Q ss_pred hhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHH
Q 040965 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 169 (311)
++.. +.+...+..+...+...|++++|+..|+++.. | +...+..+...+...|++++|...+++..+.... +...
T Consensus 331 l~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 331 TELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred HhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 9886 44677888889999999999999999999843 3 4667888999999999999999999999887422 2333
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchH-HHHHHHHH
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVL-GALLGACK 246 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~ 246 (311)
+..++..+...|++++|...++++... ..| ++..+..+..++...|++++|.+.++++ ...|+.... +.+...|.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334444566789999999999998764 234 3445777888899999999999999998 445554443 44445566
Q ss_pred hcCChhHHHHHHHHHHh---cCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 247 IHGAVDLCHEVGRRLLE---LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
..| +.|...++++.+ ..|.++ .. +...|.-.|+-+.+..+ +++.+.|
T Consensus 487 ~~g--~~a~~~l~~ll~~~~~~~~~~-~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 487 QNS--ERALPTIREFLESEQRIDNNP-GL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ccH--HHHHHHHHHHHHHhhHhhcCc-hH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 666 488887887775 334443 22 44445555666666555 7777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-11 Score=96.68 Aligned_cols=253 Identities=13% Similarity=0.051 Sum_probs=204.0
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH
Q 040965 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117 (311)
Q Consensus 38 ~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 117 (311)
..|+|.+|.++..+..+.+ +..+.+.++.+-+. ...|+.+.+-.++.+.-+....++..+.-+........|++
T Consensus 96 ~eG~~~qAEkl~~rnae~~-----e~p~l~~l~aA~AA-~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-----EQPVLAYLLAAEAA-QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-----cchHHHHHHHHHHH-HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 4799999999999987766 33344445444333 34888999999999998875577778888888999999999
Q ss_pred HHHHHHHHHc---ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-------HHHHHHHHHHHccccHHHHH
Q 040965 118 ERAIRVFKSM---VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-------ITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 118 ~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~ 187 (311)
..|..-+.++ ...++........+|.+.|++.+...++..|.+.|.--++ .+|..++.-....+..+.-.
T Consensus 170 ~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 170 PAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 9999988776 4458889999999999999999999999999999876554 47888888887777788877
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
+.|+....+ .+-++..-.+++.-+.++|+.++|.++.++. +-.-|.. . ...-.+.+-++...-++..++..+..|
T Consensus 250 ~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L-~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 250 TWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-L-CRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-H-HHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 888887664 4555667778889999999999999999887 3233333 2 222346688899999999999999999
Q ss_pred CchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 267 KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+++..+.+|+..|.+.+.|.+|...|+...+.+.
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999997766543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-11 Score=93.96 Aligned_cols=252 Identities=14% Similarity=0.110 Sum_probs=184.0
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCch---HHHHHHHHHHHhh
Q 040965 37 VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS---VFMGTALIDLYGK 113 (311)
Q Consensus 37 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 113 (311)
.-+++.++|.++|-+|.+. .|.....+.-+. .-+.+.|..+.|+.+.+.+.++.--+. ......|..-|..
T Consensus 46 LLs~Q~dKAvdlF~e~l~~----d~~t~e~~ltLG--nLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE----DPETFEAHLTLG--NLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HhhcCcchHHHHHHHHHhc----CchhhHHHHHHH--HHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 3457899999999999773 344333333332 233348889999999999987632221 2344557788999
Q ss_pred cCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHccccHHHH
Q 040965 114 VGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE----ITFVAVLTACARAQLVELG 186 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 186 (311)
.|-++.|+.+|..+... -......|+..|-...+|++|+++-+++.+.+..+.. ..|--+...+....+.+.|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 99999999999999763 3456778899999999999999999999887655532 3455666667778899999
Q ss_pred HHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 187 LELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA--SVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
...+.+..+. .|+ +..--.+.+.+...|++++|.+.++.+ .-.|+. .+...|..+|...|+.++...++.++.
T Consensus 200 ~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 200 RELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999854 444 344445668889999999999999998 334443 556778899999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 263 ELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+..+... .-..+........-.+.|..++.+-..+
T Consensus 277 ~~~~g~~-~~l~l~~lie~~~G~~~Aq~~l~~Ql~r 311 (389)
T COG2956 277 ETNTGAD-AELMLADLIELQEGIDAAQAYLTRQLRR 311 (389)
T ss_pred HccCCcc-HHHHHHHHHHHhhChHHHHHHHHHHHhh
Confidence 8776653 4445555544444556666666555443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-11 Score=105.62 Aligned_cols=202 Identities=15% Similarity=0.068 Sum_probs=107.2
Q ss_pred ccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-------hH------hhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 95 NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-------DV------CTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
.+-++.+...|.+...+...|++++|...|.+.... |. .+--.+...+-..++.+.|.+.|+.+.+.
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 344566777788888888888888888888766221 11 11122344444556666666666666654
Q ss_pred CCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcc
Q 040965 162 GLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDAS 236 (311)
Q Consensus 162 ~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~ 236 (311)
.|+ ...|..++......++..+|...++..+.- ...++..++.+...+.+...+..|.+-|+.+ ...+|..
T Consensus 526 --hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~--d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Y 601 (1018)
T KOG2002|consen 526 --HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI--DSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAY 601 (1018)
T ss_pred --CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc--ccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchh
Confidence 232 233333433333445666666666666543 2223334444555555555555555533333 1223444
Q ss_pred hHHHHHHHHH------------hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 237 VLGALLGACK------------IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 237 ~~~~l~~~~~------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+..+|...|. ..+..++|+++|.++++.+|.+..+-+.++-+++..|++.+|..+|.+.++...
T Consensus 602 sliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 602 SLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 4444443332 122345566666666666666555555555556666666666666666555443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.2e-11 Score=95.49 Aligned_cols=294 Identities=13% Similarity=0.105 Sum_probs=191.4
Q ss_pred ChhhhhhcCChHHHHHHHHHhcc----ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 1 MIDGYVKNGDMDSAILLFENMLK----RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
||.++|+-...++|.+++++... -+..+||.+|.+-.- ....+++.+|.... +.||..|+|+++++.+..
T Consensus 213 mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqk--m~Pnl~TfNalL~c~akf 286 (625)
T KOG4422|consen 213 MIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQK--MTPNLFTFNALLSCAAKF 286 (625)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhh--cCCchHhHHHHHHHHHHh
Confidence 47889999999999999998733 377888888876543 33378889999888 999999999999987765
Q ss_pred hhc-CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHH-HHHHHHHc-----------ccc-hHhhHHHHHHHH
Q 040965 77 VNE-GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLER-AIRVFKSM-----------VIK-DVCTWNAMISSL 142 (311)
Q Consensus 77 ~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-----------~~~-~~~~~~~l~~~~ 142 (311)
++- .....|.+++.+|.+.|+.|+..+|..++..+++-++..+ |..++.++ ..| |...|...+..|
T Consensus 287 g~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic 366 (625)
T KOG4422|consen 287 GKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSIC 366 (625)
T ss_pred cchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHH
Confidence 531 1245677888999999999999999999999998887654 44444444 111 444555566666
Q ss_pred HcCCCHHHHHHHHHHHHHcC----CCCcH---HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 143 ASNSREKEALVMFDEMKEKG----LRANE---ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
.+..+.+-|.++-.-+.... +.|+. .-|..+....+.....+.-...|+.|.-. -+-|+..+...++.+...
T Consensus 367 ~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v 445 (625)
T KOG4422|consen 367 SSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIHLLRALDV 445 (625)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHHHHHHHhh
Confidence 66667666666655443210 22221 22344445555555666666666665544 334444444444444444
Q ss_pred cCCHHHHHHHHHhC---------------------------------------------------------CCCCCcchH
Q 040965 216 AGLLSEAKEFMRSM---------------------------------------------------------PFEPDASVL 238 (311)
Q Consensus 216 ~g~~~~A~~~~~~~---------------------------------------------------------~~~p~~~~~ 238 (311)
.|.++-.-+++..+ .........
T Consensus 446 ~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l 525 (625)
T KOG4422|consen 446 ANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSL 525 (625)
T ss_pred cCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHH
Confidence 44444333333222 112233344
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC---CCch--hHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQ---PKHC--GRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+..+-.+.+.|..++|.+++....+.+ |..+ .+...+++.-.+......|..+++-|...+..
T Consensus 526 ~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 526 NCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 445555678999999999999886522 4333 23446677777888899999999998776654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-12 Score=109.70 Aligned_cols=229 Identities=10% Similarity=-0.058 Sum_probs=171.2
Q ss_pred chHHHHHHHHHhhhhh--hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh---------cCCHHHHHHHHHHcccc
Q 040965 62 NEATYVSVLSSCAGLV--NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK---------VGCLERAIRVFKSMVIK 130 (311)
Q Consensus 62 ~~~~~~~ll~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~ 130 (311)
+...|...+.+-.... ..+..++|...+++..+..+ .+...+..+..+|.. .+++++|...++++...
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4445555555422211 13447899999999998752 345566666665542 34588999999988443
Q ss_pred ---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccch-hhH
Q 040965 131 ---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM-EHY 206 (311)
Q Consensus 131 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 206 (311)
+...+..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++.++. .|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 67788888889999999999999999998874 335677888888999999999999999999864 4442 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC--CCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSM--PFEPDAS-VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
..++..+...|++++|.+.+++. ...|+.. .+..+...+...|++++|...++++....|.+......+...|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 34455567789999999999887 2245544 45666677889999999999999988888887777778888888888
Q ss_pred hhHHHHHHHHHHHH
Q 040965 284 RWNRATDLRKAMVE 297 (311)
Q Consensus 284 ~~~~A~~~~~~m~~ 297 (311)
++|...++.+.+
T Consensus 490 --~~a~~~l~~ll~ 501 (553)
T PRK12370 490 --ERALPTIREFLE 501 (553)
T ss_pred --HHHHHHHHHHHH
Confidence 478887777765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-11 Score=97.86 Aligned_cols=210 Identities=16% Similarity=0.057 Sum_probs=126.2
Q ss_pred chhHHHHHHHHhhcc-CCc--hHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNE-IVL--SVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.+.++..+.+++... ..| ....|..+...|.+.|+.++|...|++... .+...|+.+...+...|++++|...|
T Consensus 42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 121 (296)
T PRK11189 42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAF 121 (296)
T ss_pred HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455555555555432 112 234566677777777888888777777632 25667777777777888888888887
Q ss_pred HHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCC
Q 040965 156 DEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFE 232 (311)
Q Consensus 156 ~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~ 232 (311)
++..+. .| +..++..+..++...|++++|.+.|+...+. .|+..........+...+++++|.+.|++. ...
T Consensus 122 ~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 122 DSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 777765 33 4566666777777778888888888777753 333211111122234556777777777554 222
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHH-------hcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 233 PDASVLGALLGACKIHGAVDLCHEVGRRLL-------ELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 233 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|+... .. ......|+...+ ..++.+. +..|....+|..++..+.+.|++++|...|++..+.++
T Consensus 197 ~~~~~-~~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KEQWG-WN--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred ccccH-HH--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 32221 11 222335555443 2333333 33445556777778888888888888888877776554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-11 Score=100.56 Aligned_cols=220 Identities=15% Similarity=0.151 Sum_probs=167.4
Q ss_pred hcCcchhHHHHHHHHhhc-----c-CCchH-HHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhhHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRN-----E-IVLSV-FMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCTWNAMI 139 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~ 139 (311)
..|+++.|+.++++.++. | ..|.+ ...+.+...|...+++++|..+|+++..- -..+++.|.
T Consensus 211 ~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa 290 (508)
T KOG1840|consen 211 VQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLA 290 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 377799999999888765 2 12333 33345788999999999999999988221 346788888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc-----CCC-CcH-HHHHHHHHHHHccccHHHHHHHHHHhhccCC--Cc----cchhhH
Q 040965 140 SSLASNSREKEALVMFDEMKEK-----GLR-ANE-ITFVAVLTACARAQLVELGLELFHSMLGKFE--VV----PIMEHY 206 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~ 206 (311)
..|.+.|++++|..++++..+- |.. |.. ..++.+...|...+++++|..++....+... .. .-..++
T Consensus 291 ~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~ 370 (508)
T KOG1840|consen 291 VLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIY 370 (508)
T ss_pred HHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 8999999999999998886532 222 222 3456677789999999999999987765422 11 124678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC---------CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHh----cCCC---ch
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSM---------PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLE----LQPK---HC 269 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~---~~ 269 (311)
+.|...|...|++++|.++++++ +..+. ...++.+...|.+.+++.+|.++|.+... .+|+ ..
T Consensus 371 ~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~ 450 (508)
T KOG1840|consen 371 ANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVT 450 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchH
Confidence 99999999999999999999887 11222 35677888889999999999999988774 3444 45
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 270 GRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.+|..|+..|.+.|++++|.++.+....
T Consensus 451 ~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 451 YTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5888999999999999999999988763
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-11 Score=103.35 Aligned_cols=298 Identities=17% Similarity=0.156 Sum_probs=181.7
Q ss_pred hhhhhcCChHHHHHHHHHhcccc------HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLKRD------VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
+.|.-.|+++.+..+...+...+ ..+|..+.++|...|++++|..+|.+..+ ..|+...+..+--+ ...
T Consensus 278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k----~~~d~~~l~~~Glg-Qm~ 352 (1018)
T KOG2002|consen 278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLK----ADNDNFVLPLVGLG-QMY 352 (1018)
T ss_pred HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cCCCCccccccchh-HHH
Confidence 34455577777777777764432 34577777777777888888877777766 34554333221111 111
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC----CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHH
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG----CLERAIRVFKSMVIK---DVCTWNAMISSLASNSREK 149 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 149 (311)
...|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+..++ |...|-.+...+-.. +..
T Consensus 353 i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~ 430 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPW 430 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChH
Confidence 22666777777777777763 335566666666666664 456666666666443 555666666665543 333
Q ss_pred HHHHHHHHH----HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCC--Cccc------hhhHHHHHHHHHhcC
Q 040965 150 EALVMFDEM----KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE--VVPI------MEHYGCVVDLLGRAG 217 (311)
Q Consensus 150 ~a~~~~~~m----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~g 217 (311)
.++.+|... ...+..+.....|.+.......|+++.|...|........ ..++ ..+-..+..++-..+
T Consensus 431 ~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~ 510 (1018)
T KOG2002|consen 431 ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELH 510 (1018)
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhh
Confidence 336555543 3344456667777777777788888888888777764311 1122 212333555666667
Q ss_pred CHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 218 LLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+++.|.+.|..+ ...|+- ..|..+.......+...+|...++++...+..++.++..++..+.+...|..|.+-|..+
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 778888888777 444544 334444433445567778888888888777777777777777777777777777777666
Q ss_pred HHccCCCCCccc
Q 040965 296 VEAGIRKIPAYS 307 (311)
Q Consensus 296 ~~~~~~~~~~~~ 307 (311)
.+.-...+..++
T Consensus 591 ~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 591 LKKTSTKTDAYS 602 (1018)
T ss_pred HhhhccCCchhH
Confidence 655444333333
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.9e-11 Score=98.08 Aligned_cols=262 Identities=12% Similarity=0.035 Sum_probs=202.6
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
++.....-..-+...+++.+..++.+...+.. +++...+..-|.++.. .|+..+-..+=.++++.- |....+|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---pfh~~~~~~~ia~l~e---l~~~n~Lf~lsh~LV~~y-P~~a~sW 315 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD---PFHLPCLPLHIACLYE---LGKSNKLFLLSHKLVDLY-PSKALSW 315 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---CCCcchHHHHHHHHHH---hcccchHHHHHHHHHHhC-CCCCcch
Confidence 44455556677788999999999999998864 4555555555554444 333555555556666653 5567889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
-++.-.|...|+..+|.+.|.+...- -...|-.+..+|+-.|..++|...+...-+. ++-...-+..+.--|.+.+
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 99999999999999999999987433 4578999999999999999999999887654 1112222333445688899
Q ss_pred cHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC--C---C---C-CCcchHHHHHHHHHhcCCh
Q 040965 182 LVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM--P---F---E-PDASVLGALLGACKIHGAV 251 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~---~---~-p~~~~~~~l~~~~~~~g~~ 251 (311)
+.+.|.++|..... +.| |+...+-+.-.....+.+.+|..+|+.. . . . .-.++++.|..+|.+.+.+
T Consensus 395 n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 395 NLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred cHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 99999999999984 444 5666777776667788999999998876 1 1 1 1345678888999999999
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 252 DLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++|+..+++++.+.|.+..++..++-.|...|+++.|.+.|.+..-
T Consensus 472 ~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 472 EEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-11 Score=93.27 Aligned_cols=183 Identities=17% Similarity=0.145 Sum_probs=105.3
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++... .+...+..+...+...|++++|.+.+
T Consensus 44 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 122 (234)
T TIGR02521 44 QGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122 (234)
T ss_pred CCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 444566666665555443 22344555556666666666666666665532 23445555666666666666666666
Q ss_pred HHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 040965 156 DEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP 233 (311)
Q Consensus 156 ~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 233 (311)
++..+....+ ....+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.+++. ...|
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 200 (234)
T TIGR02521 123 EQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYN 200 (234)
T ss_pred HHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6665532112 2344555566666777777777777776643 1223445666666677777777777776665 2223
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 234 -DASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 234 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 201 QTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3344444555566677777777766665544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-12 Score=97.27 Aligned_cols=216 Identities=14% Similarity=0.016 Sum_probs=146.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--chHhhH-HHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--KDVCTW-NAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|.+.+|.+.++..++. .|-+.||..|-..|.+..+...|+.++.+-.+ |..+|| .-+...+-..++.++|.++|
T Consensus 236 Lgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lY 313 (478)
T KOG1129|consen 236 LGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLY 313 (478)
T ss_pred hcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHH
Confidence 34466777777666665 34445566666777777777777777776633 323333 33555666677777777777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFE 232 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~ 232 (311)
+...+.. +.+......+...|.-.++++.|+.++++++.. |+. ++..|..+.-+|...+++|-++.-|++. -..
T Consensus 314 k~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~ 390 (478)
T KOG1129|consen 314 KLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ 390 (478)
T ss_pred HHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC
Confidence 7776652 335556666666677777788888888777765 443 4456777777777777777777777666 122
Q ss_pred CC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 233 PD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 233 p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
|+ ...|..+.......||+..|.+.|+-++..++++..+++.|.-.-.+.|++++|..+++......
T Consensus 391 ~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 391 PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 33 24566666666777888888888888888888888888888888888888888888887766543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-11 Score=96.75 Aligned_cols=259 Identities=15% Similarity=0.079 Sum_probs=188.9
Q ss_pred HHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh
Q 040965 34 NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK 113 (311)
Q Consensus 34 ~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (311)
..+.++|+++.|++++.-+.+.+ -+.-...-+.|-.. .-+....++..|.+.-+..+... .-+......-.+.-..
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kd--nk~~saaa~nl~~l-~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKD--NKTASAAANNLCAL-RFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFA 502 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhcc--chhhHHHhhhhHHH-HHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeee
Confidence 34788999999999999887655 22222222222111 11211334777777777666543 2344444444555667
Q ss_pred cCCHHHHHHHHHHcccchHhhHHHHH---HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHH
Q 040965 114 VGCLERAIRVFKSMVIKDVCTWNAMI---SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 190 (311)
.|++++|.+.+.+....|..+-.+|. -.+-..|+.++|++.|-++..- ...+......+...|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 89999999999999888776555444 3566789999999999887543 2336677778888899999999999999
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
.+... -++.|+.....|.+.|-+.|+-.+|.+.+-+- ..-| |..+..-|..-|....-++++..+|+++.-+.|+.
T Consensus 582 ~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 88864 34557788999999999999999999886555 4444 66777777777888888999999999998888887
Q ss_pred hhHHHHHH-HHHhccchhHHHHHHHHHHHHccC
Q 040965 269 CGRYVVLS-NIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 269 ~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
. -|..++ .++.+.|++++|.++++...+.-.
T Consensus 660 ~-kwqlmiasc~rrsgnyqka~d~yk~~hrkfp 691 (840)
T KOG2003|consen 660 S-KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP 691 (840)
T ss_pred H-HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc
Confidence 6 565554 556688999999999999877543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.3e-10 Score=94.33 Aligned_cols=288 Identities=11% Similarity=0.058 Sum_probs=202.9
Q ss_pred hcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcch
Q 040965 7 KNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 7 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 83 (311)
..|++..|..++..+.+ | +...|-+-+.....+.++++|..+|.+... ..|+...|.--+..-. . .+..+
T Consensus 596 ~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~----~sgTeRv~mKs~~~er--~-ld~~e 668 (913)
T KOG0495|consen 596 KAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS----ISGTERVWMKSANLER--Y-LDNVE 668 (913)
T ss_pred hcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc----cCCcchhhHHHhHHHH--H-hhhHH
Confidence 45777777777777632 2 455777777777777788888888877766 3355544433332111 1 44577
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
+|.+++++.++. ++.-...|-.+.+.+-+.++++.|.+.|..-.+ | ....|-.+...--+.|++-.|..++++..-
T Consensus 669 eA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl 747 (913)
T KOG0495|consen 669 EALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL 747 (913)
T ss_pred HHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 788887777765 233356677777777778888888777776532 2 445566666666677788888888887766
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA 240 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 240 (311)
.+ +-+...|...|..-.+.|+.+.|..++.+.++. ++.+...|..-|...-+.++-....+.+++-. .|......
T Consensus 748 kN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVlla 822 (913)
T KOG0495|consen 748 KN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLA 822 (913)
T ss_pred cC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHH
Confidence 53 336777778888888888888888888777763 45555667666666666666666666666553 45566667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCccccc
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 309 (311)
+...+....++++|.+.|.++++.+|+.-.+|..+...+.+.|.-++-.+++....... |.-|..|.
T Consensus 823 ia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~ 889 (913)
T KOG0495|consen 823 IAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQ 889 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHH
Confidence 77788888999999999999999999998899999999999999888899998887643 34455553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.3e-13 Score=77.77 Aligned_cols=50 Identities=30% Similarity=0.589 Sum_probs=40.1
Q ss_pred chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56778888888888888888888888888888888888888888887764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-11 Score=95.58 Aligned_cols=229 Identities=14% Similarity=0.107 Sum_probs=190.0
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHH
Q 040965 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALID 109 (311)
Q Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (311)
+.+.++|.+.|.+.+|.+.++..++ ..|-..||..|-.+|.+.. + .+.|+.++.+.++. .+-++.......+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~----q~~~~dTfllLskvY~rid-Q--P~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT----QFPHPDTFLLLSKVYQRID-Q--PERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh----cCCchhHHHHHHHHHHHhc-c--HHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 5789999999999999999999988 5677888888888777654 4 88999999888876 3445555667788
Q ss_pred HHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHH
Q 040965 110 LYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELG 186 (311)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a 186 (311)
.+...++.++|.++++...+. ++.+..++...|.-.++++-|+.+|+++.+.|+. +...|..+.-+|.-.+++|-+
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhh
Confidence 899999999999999988554 5666777778899999999999999999999976 677888888899999999999
Q ss_pred HHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 187 LELFHSMLGKFEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 187 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
+.-|.+.+.. --.|+ ..+|..|.......|++..|.+.|+-. ....+...++.|.-.-.+.|+++.|..++..+.
T Consensus 378 L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999998764 22233 356888888888899999999999887 323455888888888889999999999999999
Q ss_pred hcCCCc
Q 040965 263 ELQPKH 268 (311)
Q Consensus 263 ~~~~~~ 268 (311)
...|.-
T Consensus 457 s~~P~m 462 (478)
T KOG1129|consen 457 SVMPDM 462 (478)
T ss_pred hhCccc
Confidence 988874
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-10 Score=90.36 Aligned_cols=283 Identities=15% Similarity=0.182 Sum_probs=196.5
Q ss_pred hcCChHHHHHHHHHh--ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 7 KNGDMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 7 ~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
..|++..|.++|++- ..|+..+|++.|+.-.+.+.++.|..+|++..- +.|+..+|.-.... -.+.|....
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~----~HP~v~~wikyarF---E~k~g~~~~ 225 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL----VHPKVSNWIKYARF---EEKHGNVAL 225 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe----ecccHHHHHHHHHH---HHhcCcHHH
Confidence 457788888888776 467888888888888888888888888888876 67888777665542 223556777
Q ss_pred HHHHHHHHhhc-cC-CchHHHHHHHHHHHhhcCCHHHHHHHHHHc-----------------------------------
Q 040965 85 GKQVHGYILRN-EI-VLSVFMGTALIDLYGKVGCLERAIRVFKSM----------------------------------- 127 (311)
Q Consensus 85 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------------------------------- 127 (311)
+.++|+...+. |- ..+...+.+....=.++..++.|..+|.-.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 77777666543 10 112233333333333444445544444332
Q ss_pred ---------ccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--H-----HHHHHHHH---HHccccHHH
Q 040965 128 ---------VIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE--I-----TFVAVLTA---CARAQLVEL 185 (311)
Q Consensus 128 ---------~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~-----~~~~l~~~---~~~~~~~~~ 185 (311)
++. |-.+|.-.+..-...|+.+...++|++.... ++|-. . .|.-+=.+ -....+.+.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 111 3345666666667789999999999998765 55521 1 12111112 235678889
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHH----HhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLL----GRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
+.++++..++- ++-...|+..+--.| .++.++..|.+++... |.-|-..+|...|..-.+.+.+|.+..++++
T Consensus 385 tr~vyq~~l~l--IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLDL--IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHhh--cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999888852 333345555544443 4678999999999887 8889999999999888899999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 261 LLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.++.+|.+..+|...+..-...|+++.|..+|+-.++..
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 999999999899988888888999999999998776643
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-11 Score=89.88 Aligned_cols=196 Identities=11% Similarity=-0.012 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
.+...|.-.|...|+...|..-+++.++. +..+|..+...|.+.|+.+.|.+-|++..+.. +-+-...|.....+|
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34455666777777777777777777444 34566677777777777777777777776652 224556666666777
Q ss_pred ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHE 256 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~ 256 (311)
..|++++|...|++.+..+...--..+|..+.-+..+.|+++.|.+.|++. ...|+ ..+...+.....+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 777777777777777766433333456777777777777777777777776 33443 3556666677777777777777
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
++++.....+.........|+.-.+.|+.+.+-++=..+...
T Consensus 195 ~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 195 YLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 777777655555556666666666777777666665555443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.9e-11 Score=99.71 Aligned_cols=233 Identities=12% Similarity=0.091 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcC---CC-CCCCchHHHHHHHHHh-hhhhhcCcchhHHHHHHHHhhc-----c-
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGN---VN-LVRPNEATYVSVLSSC-AGLVNEGGLYLGKQVHGYILRN-----E- 96 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~-~~~p~~~~~~~ll~~~-~~~~~~~~~~~a~~~~~~~~~~-----~- 96 (311)
+...+...|...|++++|..+++..++. +. ...|...+ ++..+ ..+.+.+++++|..+|++++.. |
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~---~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVAS---MLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 5555899999999999999999998763 10 01333333 33211 2333467799999999888763 2
Q ss_pred -CCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc----------ch-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---
Q 040965 97 -IVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI----------KD-VCTWNAMISSLASNSREKEALVMFDEMKEK--- 161 (311)
Q Consensus 97 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--- 161 (311)
.+.-..+++.|...|.+.|++++|...++.+.+ +. ...++.++..+...+++++|..+++...+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122357788899999999999999998887621 12 234566777889999999999999986542
Q ss_pred CCCCc----HHHHHHHHHHHHccccHHHHHHHHHHhhccC-----CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC--
Q 040965 162 GLRAN----EITFVAVLTACARAQLVELGLELFHSMLGKF-----EVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-- 229 (311)
Q Consensus 162 ~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 229 (311)
-..++ ..+++.+...|...|++++|.+++++++... +..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12222 4689999999999999999999999987542 1122 2456788889999999999999998776
Q ss_pred ------CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 230 ------PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 230 ------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
...|+. .+|..|...|...|+++.|.++.+.+..
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 223444 6788999999999999999999998874
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-09 Score=90.62 Aligned_cols=268 Identities=11% Similarity=0.038 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHH
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (311)
.+|+.-...|.+.+.++-|..+|...++ +.|. ...|..... .-...|..+....++++.+..- +.....|.
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alq----vfp~k~slWlra~~---~ek~hgt~Esl~Allqkav~~~-pkae~lwl 588 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQ----VFPCKKSLWLRAAM---FEKSHGTRESLEALLQKAVEQC-PKAEILWL 588 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHh----hccchhHHHHHHHH---HHHhcCcHHHHHHHHHHHHHhC-CcchhHHH
Confidence 4788888888899999999999999987 4444 344444433 2233666889999999998874 44566777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 182 (311)
.....+-..|++..|..++.++.. .+...|.+-+.....+.+++.|..+|.+... ..|+...|..-+....-.++
T Consensus 589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhh
Confidence 778888899999999999998843 3667888888999999999999999998776 47788888888888888999
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHH
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
.++|.+++++.++.+ +.-...|..+.+.+.+.++.+.|.+.|..- ..-|+. ..|..|...--+.|.+..|..++++
T Consensus 667 ~eeA~rllEe~lk~f--p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildr 744 (913)
T KOG0495|consen 667 VEEALRLLEEALKSF--PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDR 744 (913)
T ss_pred HHHHHHHHHHHHHhC--CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999999999753 323457888999999999999999998877 545654 6677777777788999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCcccc
Q 040965 261 LLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSL 308 (311)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 308 (311)
..-.+|.+...|...+++-.+.|+.+.|..+..+..+.. |..|.-|
T Consensus 745 arlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LW 790 (913)
T KOG0495|consen 745 ARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLW 790 (913)
T ss_pred HHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhH
Confidence 999999999999999999999999999999988877653 3445444
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-10 Score=94.10 Aligned_cols=287 Identities=14% Similarity=0.087 Sum_probs=197.5
Q ss_pred hhhhhcCChHHHHHHHHHhccc--c-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh-
Q 040965 3 DGYVKNGDMDSAILLFENMLKR--D-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN- 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~- 78 (311)
..+...|++++|++.++.-... | ..........+.+.|+.++|..+|..++.. .|+...|...+..+.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r----NPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR----NPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHhhhcc
Confidence 5678899999999999876332 4 456678889999999999999999999984 5888887777766552221
Q ss_pred --cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHH-HHHHHHHHcccch-HhhHHHHHHHHHcCCCHHHHHHH
Q 040965 79 --EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE-RAIRVFKSMVIKD-VCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 79 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
....+...++++++...- |.......+.-.+.....+. .+...+..+.... +.+++.+-..|....+..-..++
T Consensus 88 ~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred cccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHH
Confidence 234677788888876653 22222222222222222232 2333334444443 45666666666666666656666
Q ss_pred HHHHHHc----C----------CCCcH--HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcC
Q 040965 155 FDEMKEK----G----------LRANE--ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAG 217 (311)
Q Consensus 155 ~~~m~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 217 (311)
+...... + -+|+. .++..+...|-..|++++|+.++++.++. .|+ +..|..-...|-..|
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCC
Confidence 6665432 1 12343 34566677788999999999999999964 555 577888899999999
Q ss_pred CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCc-------hhHHHHHHHHHhccchhH
Q 040965 218 LLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ--PKH-------CGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~-------~~~~~~l~~~~~~~g~~~ 286 (311)
++.+|.+.++.. ...+ |...-+-.+..+.+.|++++|..++....+.+ |.. .......+.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999988 3343 44555556677889999999999999887644 221 112235678899999999
Q ss_pred HHHHHHHHHHHc
Q 040965 287 RATDLRKAMVEA 298 (311)
Q Consensus 287 ~A~~~~~~m~~~ 298 (311)
.|.+.|..+.+.
T Consensus 323 ~ALk~~~~v~k~ 334 (517)
T PF12569_consen 323 LALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999988877653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.5e-10 Score=91.09 Aligned_cols=286 Identities=13% Similarity=0.058 Sum_probs=194.2
Q ss_pred hhhhhcCChHHHHHHHHHh--cccc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENM--LKRD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~--~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
+-|.++|++++|++.|... ..|| +..|.....+|...|+++++.+.-.+.++ +.|+-. -.+++-.......
T Consensus 123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE----l~P~Y~--KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE----LNPDYV--KALLRRASAHEQL 196 (606)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh----cCcHHH--HHHHHHHHHHHhh
Confidence 3467889999999999988 4566 78888999999999999999998888877 666632 2233322222235
Q ss_pred CcchhHHHHH------HHHh------------------------h-cc--CCchHHHHHHHHHHHhhc--------CC--
Q 040965 80 GGLYLGKQVH------GYIL------------------------R-NE--IVLSVFMGTALIDLYGKV--------GC-- 116 (311)
Q Consensus 80 ~~~~~a~~~~------~~~~------------------------~-~~--~~~~~~~~~~l~~~~~~~--------g~-- 116 (311)
|+++++..-. +... + .+ +-|+.....+....|... ++
T Consensus 197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 5566665421 1100 0 01 113332222222222110 00
Q ss_pred ---HHHHHHHHHHc--------------------ccc-----h------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 117 ---LERAIRVFKSM--------------------VIK-----D------VCTWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 117 ---~~~A~~~~~~~--------------------~~~-----~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
..++.+.+..- ..+ | ..+...-...+.-.|+.-.|..-|+..++..
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~ 356 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD 356 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence 11111111111 000 1 1111111223345688888999999888764
Q ss_pred CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHH
Q 040965 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLG 239 (311)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 239 (311)
..+ ...|..+..+|...++.++....|++..+ +.| ++.+|..-...+.-.+++++|..-|++. .+.| +...|.
T Consensus 357 ~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 357 PAF-NSLYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred ccc-chHHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 333 33377788889999999999999999985 333 4567888888888899999999999998 5566 457777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+.-+..+.+++++++..|++.++..|..+.+|+....++...+++++|.+.|+..++.
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 77777788999999999999999999999999999999999999999999999988764
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-10 Score=88.48 Aligned_cols=280 Identities=13% Similarity=0.098 Sum_probs=194.3
Q ss_pred cCChHHHHHHHHHh-----ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH----HHHHHHHhhhhhh
Q 040965 8 NGDMDSAILLFENM-----LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT----YVSVLSSCAGLVN 78 (311)
Q Consensus 8 ~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~----~~~ll~~~~~~~~ 78 (311)
.++...|...+-.+ ...|+.....+.+.+...|+.++|...|+...- +.|+..+ |..|+. .
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~----~dpy~i~~MD~Ya~LL~------~ 278 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC----ANPDNVEAMDLYAVLLG------Q 278 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh----CChhhhhhHHHHHHHHH------h
Confidence 34444444444333 233788899999999999999999999999876 4565433 444443 3
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchH---hhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV---CTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|+.+....+...+.... .-+...|-.-+.......+++.|+.+-++.+..+. ..|-.-...+...|++++|.-.|
T Consensus 279 eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 279 EGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred ccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 666777777777766543 12223333334445566788888888888765544 44444456788889999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH-HHHHh-cCCHHHHHHHHHhC-CCC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV-DLLGR-AGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~-~~~ 232 (311)
+...... +.+...|..|+.+|...|++.+|.-.-+...+. +..+..+.+.+. ..+.- -.--++|..++++. .+.
T Consensus 358 R~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 358 RTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 9877651 336788999999999999999888877776653 333445555443 22322 23456788888877 667
Q ss_pred CCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCC
Q 040965 233 PDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 233 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 302 (311)
|+- ...+.+...+...|..+.+..++++.+...|+.. ....|++.+...+.+++|++.|......+++.
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 765 5566667778888888889998888888777765 77888888888888888888888777665543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=8e-13 Score=75.53 Aligned_cols=49 Identities=31% Similarity=0.630 Sum_probs=45.4
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh
Q 040965 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74 (311)
Q Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 74 (311)
||+.+||++|.+|++.|++++|.++|++|.+.| +.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g--~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRG--IKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHc
Confidence 688999999999999999999999999999999 9999999999998765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.1e-09 Score=88.09 Aligned_cols=229 Identities=11% Similarity=-0.081 Sum_probs=154.4
Q ss_pred cCCHhHHHHHHHHhhcCCCCCCCch--HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 39 NGCFGEAICVFKNMMGNVNLVRPNE--ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
.+..+.++.-+.+++...+ ..|+. ..|..+-. .+...|+.++|...|++.++.. +.+...|+.+...+...|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~-~~~~~~a~~~~~~g~---~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~ 113 (296)
T PRK11189 39 TLQQEVILARLNQILASRD-LTDEERAQLHYERGV---LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGN 113 (296)
T ss_pred chHHHHHHHHHHHHHcccc-CCcHhhHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCC
Confidence 4566778888888886542 33332 22322222 2233677999999999999875 4467899999999999999
Q ss_pred HHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 117 LERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 117 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+++|...|++..+ | +..+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|...|.+.
T Consensus 114 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 114 FDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999999843 3 5678888889999999999999999998876 343322222223345678899999999776
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHH--HHHHHHhC-CCC----C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSE--AKEFMRSM-PFE----P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~-~~~----p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
... ..|+... ..+.. ...|+..+ +.+.+.+. ... | ....|..+...+...|++++|...|+++.+.+
T Consensus 192 ~~~--~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEK--LDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred Hhh--CCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 543 3333222 22333 33455433 33333322 111 2 23578888889999999999999999999999
Q ss_pred CCc-hhHHHHHHHHH
Q 040965 266 PKH-CGRYVVLSNIH 279 (311)
Q Consensus 266 ~~~-~~~~~~l~~~~ 279 (311)
|.+ ...-..++...
T Consensus 267 ~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 267 VYNFVEHRYALLELA 281 (296)
T ss_pred CchHHHHHHHHHHHH
Confidence 754 33333444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.6e-10 Score=85.23 Aligned_cols=282 Identities=14% Similarity=0.079 Sum_probs=204.3
Q ss_pred hhhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
..+.+..+++.|++++..-.++ +....+.+..+|-...++..|...|+++-. ..|...-|...-. ..+.+.
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q----l~P~~~qYrlY~A--QSLY~A 91 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ----LHPELEQYRLYQA--QSLYKA 91 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHH--HHHHHh
Confidence 4457788888888888766433 667888999999999999999999999976 5677665543221 233346
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc-cchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV-IKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
+.+..|+.+...|.+.. ..-..+...-.......+++..+..++++.. +.+..+.+.......+.|+++.|.+-|+..
T Consensus 92 ~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred cccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 77899999988887641 1111111111222345688999999999987 456777777777788999999999999998
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-------------chh--------hHHHHH-------
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-------------IME--------HYGCVV------- 210 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~--------~~~~l~------- 210 (311)
.+-+---+...|+..+ +..+.|+.+.|++...++.++ |++. |+. .-+.++
T Consensus 171 lqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 171 LQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 8765444556777766 456779999999999888766 4321 111 112333
Q ss_pred HHHHhcCCHHHHHHHHHhCC----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhH
Q 040965 211 DLLGRAGLLSEAKEFMRSMP----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (311)
..+.+.|+++.|.+.+..|+ ...|+.|.+.+.-. -..+++.+..+-++-+++.+|-++.+|..++-.|++..-++
T Consensus 249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~ 327 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFD 327 (459)
T ss_pred hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHh
Confidence 34567899999999999993 33567777665422 24567888888888888999988899999999999999999
Q ss_pred HHHHHHHH
Q 040965 287 RATDLRKA 294 (311)
Q Consensus 287 ~A~~~~~~ 294 (311)
-|..++.+
T Consensus 328 lAADvLAE 335 (459)
T KOG4340|consen 328 LAADVLAE 335 (459)
T ss_pred HHHHHHhh
Confidence 99888755
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-10 Score=89.25 Aligned_cols=263 Identities=12% Similarity=0.045 Sum_probs=196.6
Q ss_pred hhhhhhcCChHHHHHHHHHhccccHH---HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLKRDVV---SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 78 (311)
...+...|+.++|+..|+....-|+. ......-.+.+.|+.+....+...+.... +-... ..++.+|....
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~--~wfV~~~~l~~- 312 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTAS--HWFVHAQLLYD- 312 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchh--hhhhhhhhhhh-
Confidence 35678899999999999988544332 33333444568899998888888875422 11111 12233333333
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc--ccc-hHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM--VIK-DVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
..+++.|+.+-++.++.+ +.+...+-.-...+...|+.++|.=.|+.. ..| +..+|.-|+.+|...|.+.+|.-.-
T Consensus 313 ~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~A 391 (564)
T KOG1174|consen 313 EKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALA 391 (564)
T ss_pred hhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHH
Confidence 666889999988888775 445666666678888999999999999877 343 7899999999999999999999887
Q ss_pred HHHHHcCCCCcHHHHHHHH-HHH-HccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040965 156 DEMKEKGLRANEITFVAVL-TAC-ARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~-~~~-~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 231 (311)
+...+. .+.+..+.+.+. ..| ....--++|.+++++.++ +.|+ ....+.+...+...|....+..++++. ..
T Consensus 392 n~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 392 NWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 776554 344566666553 333 344556899999999884 4665 345667778899999999999999998 77
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 232 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
.||....+.|...+...+.+++|+..|..+++.+|++..+...|
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 89999999999999999999999999999999999987555443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.8e-09 Score=92.44 Aligned_cols=289 Identities=12% Similarity=0.135 Sum_probs=192.5
Q ss_pred hhhhhcCChHHHHHHHHHh---ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENM---LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
..|-+.|+.+++...+-.+ .+.|...|..+.....+.|++++|.-+|.++++. .|+. |..+..-...+.+.
T Consensus 181 ~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~----~p~n--~~~~~ers~L~~~~ 254 (895)
T KOG2076|consen 181 EIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA----NPSN--WELIYERSSLYQKT 254 (895)
T ss_pred HHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc----CCcc--hHHHHHHHHHHHHh
Confidence 4567788888888777555 3347788888888888888888888888888774 3433 22122211222335
Q ss_pred CcchhHHHHHHHHhhccCCchHHHH----HHHHHHHhhcCCHHHHHHHHHHcccc-----hHhhHHHHHHHHHcCCCHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMG----TALIDLYGKVGCLERAIRVFKSMVIK-----DVCTWNAMISSLASNSREKE 150 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~ 150 (311)
|+...|...|.++.+..++.+..-+ -..+..|...++-+.|.+.++..... +...+++++..+.+...++.
T Consensus 255 G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~ 334 (895)
T KOG2076|consen 255 GDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDK 334 (895)
T ss_pred ChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHH
Confidence 6678888888887776543332222 22345566666667777776665331 23345555555555555555
Q ss_pred HHHHHHHHHH-------------------------------------------------------------cCCCC--cH
Q 040965 151 ALVMFDEMKE-------------------------------------------------------------KGLRA--NE 167 (311)
Q Consensus 151 a~~~~~~m~~-------------------------------------------------------------~~~~~--~~ 167 (311)
|......+.. ..+.| +.
T Consensus 335 ~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~ 414 (895)
T KOG2076|consen 335 ALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDV 414 (895)
T ss_pred hhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhH
Confidence 5554444433 22222 23
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~ 245 (311)
..|.-+..++...|++..|+.+|..+... ...-+...|-.+..+|...|.+++|.+.|+.. ...|+. ..-.+|...+
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~ 493 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLY 493 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHH
Confidence 45677788889999999999999999876 33345678999999999999999999999998 556654 4445566678
Q ss_pred HhcCChhHHHHHHHHHHhcCC---------CchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 246 KIHGAVDLCHEVGRRLLELQP---------KHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+.|+.++|.+.+..+..-++ +...........+...|+.++=..+-..|...
T Consensus 494 ~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~ 555 (895)
T KOG2076|consen 494 QQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDD 555 (895)
T ss_pred HhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 899999999999999763221 12234556777888899988876666666543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-09 Score=80.06 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=78.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 216 (311)
|.-.|...|+...|.+-+++..+.. +.+..++..+...|.+.|..+.|.+.|++.++ +.| +..+.|.....+|..
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHHHHhC
Confidence 4444555555555555555555442 11334455555555555555555555555553 222 233445555555555
Q ss_pred CCHHHHHHHHHhCCCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 217 GLLSEAKEFMRSMPFEP----DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 217 g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
|++++|...|++.--.| -..+|..+.-+..+.|+++.|...|++.++.+|+.+.+...+.....+.|++..|..++
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 55555555555541111 12344444444445555555555555555555555445555555555555555555555
Q ss_pred HHHHHccC
Q 040965 293 KAMVEAGI 300 (311)
Q Consensus 293 ~~m~~~~~ 300 (311)
++....+.
T Consensus 197 ~~~~~~~~ 204 (250)
T COG3063 197 ERYQQRGG 204 (250)
T ss_pred HHHHhccc
Confidence 55444433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-10 Score=90.12 Aligned_cols=249 Identities=11% Similarity=0.077 Sum_probs=156.0
Q ss_pred hhhcCChHHHHHHHHHh-cc--ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc
Q 040965 5 YVKNGDMDSAILLFENM-LK--RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 81 (311)
+.-.|++..++.-.+.. .. .+.....-+.+++...|+++.++. +.... -.|.......+...+.. .++
T Consensus 11 ~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~---~~~~l~av~~la~y~~~---~~~ 81 (290)
T PF04733_consen 11 QFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS---SSPELQAVRLLAEYLSS---PSD 81 (290)
T ss_dssp HHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT---SSCCCHHHHHHHHHHCT---STT
T ss_pred HHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC---CChhHHHHHHHHHHHhC---ccc
Confidence 33458888888666511 11 134566778889999998876553 33222 35665555444432221 122
Q ss_pred chhHHHHHHHHhhccCC-chHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
-+.+..-++.....+.. .+..+.......+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44555555444433323 33344444456677889999999888765 4556667778888999999999999999876
Q ss_pred cCCCCcHHHHHHHHHH----HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 040965 161 KGLRANEITFVAVLTA----CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-D 234 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~ 234 (311)
.+ .| .+...+..+ ....+.+..|..+|+++.++ ..+++.+.+.+..++...|++++|.+++++. ...| +
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND 234 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence 52 33 333334433 33344688999999998764 4567778888888888999999999988886 3344 4
Q ss_pred cchHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCch
Q 040965 235 ASVLGALLGACKIHGAV-DLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 235 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 269 (311)
..+...++......|+. +.+.+.+.++....|+++
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 45666667666777777 667788888888888875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-09 Score=86.89 Aligned_cols=245 Identities=12% Similarity=0.041 Sum_probs=164.6
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCc--hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHH
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPN--EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL 110 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (311)
++-+.-.|++..++.-.+ ... ..|+ ......+.+++.. .|+.+. .+.++.+.. .|.......+...
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~----~~~~~~~e~~~~~~Rs~iA---lg~~~~---vl~ei~~~~-~~~l~av~~la~y 75 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKS----FSPENKLERDFYQYRSYIA---LGQYDS---VLSEIKKSS-SPELQAVRLLAEY 75 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHT----STCHHHHHHHHHHHHHHHH---TT-HHH---HHHHS-TTS-SCCCHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHhh-ccC----CCchhHHHHHHHHHHHHHH---cCChhH---HHHHhccCC-ChhHHHHHHHHHH
Confidence 344566799999987666 222 2232 2222233333333 333443 444444443 6666666666665
Q ss_pred HhhcCCHHHHHHHHHHcc-cc----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 111 YGKVGCLERAIRVFKSMV-IK----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
+...++-+.++.-+++.. .+ +..........+...|++++|++++... .+.......+..+.+.++++.
T Consensus 76 ~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dl 149 (290)
T PF04733_consen 76 LSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDL 149 (290)
T ss_dssp HCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHH
T ss_pred HhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHH
Confidence 555466677777776653 22 2333333445677889999999998752 356677778889999999999
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGR 259 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (311)
|.+.++.|.+. ..|. +...|+.++.. .+.+.+|..+|+++ ...+++.+.+.+..++...|++++|..+++
T Consensus 150 A~k~l~~~~~~---~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~ 225 (290)
T PF04733_consen 150 AEKELKNMQQI---DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLE 225 (290)
T ss_dssp HHHHHHHHHCC---SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc---CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999753 4443 44455555443 34799999999999 445777888888889999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHhccchh-HHHHHHHHHHHHcc
Q 040965 260 RLLELQPKHCGRYVVLSNIHAGLERW-NRATDLRKAMVEAG 299 (311)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~ 299 (311)
++.+.+|.++.+...++.+....|+. +.+.+++.++....
T Consensus 226 ~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 226 EALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp HHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred HHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 99999999999999999998888888 67888888887653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.7e-09 Score=89.39 Aligned_cols=258 Identities=10% Similarity=0.020 Sum_probs=180.7
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHh
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (311)
...+...|++++|++.++.-.. .-+|...+.-...- -+.+.|+.++|..+|..+++.+ +.|..-|..+..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~----~I~Dk~~~~E~rA~--ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK----QILDKLAVLEKRAE--LLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh----hCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHh
Confidence 3455788999999999988655 45676665544432 2233677999999999999997 446666666776663
Q ss_pred hc-----CCHHHHHHHHHHcccc--hHhhHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH
Q 040965 113 KV-----GCLERAIRVFKSMVIK--DVCTWNAMISSLASNSRE-KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 113 ~~-----g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
-. .+.+...++++++... .......+.-.+..-..+ ..+..++..+...|+++ +|+.+-..|....+.+
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 32 2567778888877332 222222222222222223 35566777788888763 5566665666555555
Q ss_pred HHHHHHHHhhccC-------------CCccch--hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHh
Q 040965 185 LGLELFHSMLGKF-------------EVVPIM--EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKI 247 (311)
Q Consensus 185 ~a~~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~ 247 (311)
-...++....... .-+|+. .++..+...|-..|++++|++++++. ...|+. ..|..-.+.+.+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh 240 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 5555555543221 113443 34466678888999999999999987 556764 666677788999
Q ss_pred cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 248 HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.|++++|...++.+..+++.+...-+..+..+.+.|+.++|.+++....+.+.
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999999999987777888999999999999999998877776
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.6e-08 Score=78.91 Aligned_cols=288 Identities=13% Similarity=0.115 Sum_probs=210.8
Q ss_pred hhhhcCChHHHHHHHHHhccccHHHHHHH---HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVSWTSI---INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.+.-.|++..|+.-|...++.|+..|-++ ...|...|+...|+.-+.+.++ ++||-..-. +-.+ ..+.+.|
T Consensus 47 ~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle----lKpDF~~AR-iQRg-~vllK~G 120 (504)
T KOG0624|consen 47 ELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE----LKPDFMAAR-IQRG-VVLLKQG 120 (504)
T ss_pred HHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh----cCccHHHHH-HHhc-hhhhhcc
Confidence 35567888888888888877776666554 4568888999999999999988 778854432 1122 2333489
Q ss_pred cchhHHHHHHHHhhccCCch--HHH------------HHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLS--VFM------------GTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLA 143 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~--~~~------------~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 143 (311)
.+++|..-|+.+++.....+ ... ....+..+...|+...|++....+.+ | |...|..-..+|.
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 99999999999988753211 111 12234456677899999988887743 2 7788888889999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH----HH---HH------
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY----GC---VV------ 210 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~---l~------ 210 (311)
..|++..|+.-++..-+.. .-+..++..+-..+...|+.+.++...++.++ +.|+...+ .. +.
T Consensus 201 ~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK---ldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK---LDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred hcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc---cCcchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999998888776653 33556666677778889999999999999884 56664322 11 11
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPDA-----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
......+++.++.+..+.. ...|.. ..+..+..++...+++.+|++...+++..+|++..++.--..+|.-...
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~ 356 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM 356 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH
Confidence 1233557777777777665 445652 3345556677889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHccCC
Q 040965 285 WNRATDLRKAMVEAGIR 301 (311)
Q Consensus 285 ~~~A~~~~~~m~~~~~~ 301 (311)
++.|+.-|+...+.+..
T Consensus 357 YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 357 YDDAIHDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 99999999988876543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.9e-09 Score=85.78 Aligned_cols=260 Identities=10% Similarity=0.020 Sum_probs=197.6
Q ss_pred hhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
-+...+++.+..++++.+.+. +...+-.-|.++...|+..+-..+=.++.+.. +-...+|-++-.-| +. -|
T Consensus 253 ~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y---P~~a~sW~aVg~YY--l~-i~ 326 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY---PSKALSWFAVGCYY--LM-IG 326 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC---CCCCcchhhHHHHH--HH-hc
Confidence 456778899999999888543 45566667778999999999888888888743 23345665544322 22 46
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
+.++|.+.|.+....+.. -...|-.+.+.|.-.|.-+.|+..+..+-+- ....+.-+.--|.+.+....|.+.|.+
T Consensus 327 k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~ 405 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ 405 (611)
T ss_pred CcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence 699999999988766422 2457788999999999999999998876322 222233355668889999999999998
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccC-CC---c-cchhhHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 040965 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF-EV---V-PIMEHYGCVVDLLGRAGLLSEAKEFMRSM--P 230 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~ 230 (311)
.... .+.|+...+-+.-.....+.+.+|..+|+..+..- .+ . ....+++.|..+|.+.+.+++|+..+++. -
T Consensus 406 A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 406 ALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred HHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 7764 24477788888777778899999999999877210 01 1 13346888999999999999999999998 3
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 231 FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 231 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.+.+..++.++.-.|...|+++.|.+.|.+.+.+.|++..+
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHH
Confidence 34577888888889999999999999999999999998633
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-08 Score=81.72 Aligned_cols=143 Identities=13% Similarity=0.123 Sum_probs=86.4
Q ss_pred cCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhhhhhcCcch
Q 040965 8 NGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~ 83 (311)
+++++.|..+|++.+.- +...|--.+..-.++.++..|..++++.... -|-.. .|--.+. .-...|++.
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~----lPRVdqlWyKY~y---mEE~LgNi~ 158 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI----LPRVDQLWYKYIY---MEEMLGNIA 158 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh----cchHHHHHHHHHH---HHHHhcccH
Confidence 56777888888887443 5556666677777777777777777777652 33221 1111111 111145577
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc--ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
.|.++|+.-.+- .|+...|++.++.=.+-..++.|.++++.. ..|++.+|--....-.+.|+...|..+|+...
T Consensus 159 gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 159 GARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 777777666543 567777777777777777777777777765 44555555555555555565555555555544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.3e-08 Score=85.60 Aligned_cols=290 Identities=17% Similarity=0.140 Sum_probs=178.6
Q ss_pred hhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHH-HHHhhhhhhc
Q 040965 4 GYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV-LSSCAGLVNE 79 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l-l~~~~~~~~~ 79 (311)
++.+.|+++.+.+.|++...- ....|+.+...|...|.-..|..++++..... -.|+..+...+ -..|... .
T Consensus 332 al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~--~~ps~~s~~Lmasklc~e~--l 407 (799)
T KOG4162|consen 332 ALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKS--EQPSDISVLLMASKLCIER--L 407 (799)
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccc--cCCCcchHHHHHHHHHHhc--h
Confidence 456788899999999887543 45689999999999999999999998876533 22433332222 2222111 1
Q ss_pred Ccch--------------------------------------------------hHHHHHHHHhhccCCchHHHHHHHHH
Q 040965 80 GGLY--------------------------------------------------LGKQVHGYILRNEIVLSVFMGTALID 109 (311)
Q Consensus 80 ~~~~--------------------------------------------------~a~~~~~~~~~~~~~~~~~~~~~l~~ 109 (311)
+.++ ++.+.+++..+.+.. |+.+...+.-
T Consensus 408 ~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lal 486 (799)
T KOG4162|consen 408 KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLAL 486 (799)
T ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 1133 333444444433321 1122122333
Q ss_pred HHhhcCCHHHHHHHHHHccc----chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCC------------------Cc
Q 040965 110 LYGKVGCLERAIRVFKSMVI----KDVCTWNAMISSLASNSREKEALVMFDEMKEK-GLR------------------AN 166 (311)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~------------------~~ 166 (311)
-|+..++++.|.+..++... .+...|..+.-.+...+++.+|+.+.+..... |.. -.
T Consensus 487 q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~ 566 (799)
T KOG4162|consen 487 QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEA 566 (799)
T ss_pred HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHH
Confidence 35555666666666665522 26677777777777788888888877765432 110 00
Q ss_pred HHHHHHHH------------------------------------------------------------------------
Q 040965 167 EITFVAVL------------------------------------------------------------------------ 174 (311)
Q Consensus 167 ~~~~~~l~------------------------------------------------------------------------ 174 (311)
..|...++
T Consensus 567 l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 567 LDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchH
Confidence 01111111
Q ss_pred -----------HHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHH
Q 040965 175 -----------TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGAL 241 (311)
Q Consensus 175 -----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l 241 (311)
..+.+.++.++|...+.+..+. .+.....|......+...|+..+|.+.|... -+.|+. .+..++
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 1122222233333333333211 1112233444445556667777777777666 566754 778889
Q ss_pred HHHHHhcCChhHHHH--HHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 242 LGACKIHGAVDLCHE--VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 242 ~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
...+.+.|+...|.. ++..+.+.+|.++.+|..++..+.+.|+.++|.+.|+...+...
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 999999999888888 99999999999999999999999999999999999998877543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.8e-08 Score=79.61 Aligned_cols=289 Identities=11% Similarity=0.002 Sum_probs=177.4
Q ss_pred hhhcCChHHHHHHHHHhcc---c--c-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhhh-
Q 040965 5 YVKNGDMDSAILLFENMLK---R--D-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCAGL- 76 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~---~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~- 76 (311)
+...|+.+.+...+..... + + ..........+...|++++|.+.+++..+. .|+.. .+.. ...+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~P~~~~a~~~-~~~~~~~~ 90 (355)
T cd05804 16 LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD----YPRDLLALKL-HLGAFGLG 90 (355)
T ss_pred HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHH-hHHHHHhc
Confidence 4455677777666666521 1 2 223333455667889999999999999874 45443 3221 1011111
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHH
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
...+..+.+.+.+.... ...+........+...+...|++++|+..+++.... +...+..+...+...|++++|..
T Consensus 91 ~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 91 DFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred ccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 11344556666655421 122223455556778889999999999999998433 56678888999999999999999
Q ss_pred HHHHHHHcCC-CCcH--HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH-H--HHHHHHHhcCCHHHHHHH--
Q 040965 154 MFDEMKEKGL-RANE--ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY-G--CVVDLLGRAGLLSEAKEF-- 225 (311)
Q Consensus 154 ~~~~m~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~-- 225 (311)
.+++...... .|+. ..|..+...+...|++++|..++++........+..... + .++..+...|..+.+.++
T Consensus 170 ~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~ 249 (355)
T cd05804 170 FMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWED 249 (355)
T ss_pred HHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHH
Confidence 9999876532 2232 345678888999999999999999986431211222111 1 223333344433333332
Q ss_pred H-HhC-CC-CCCcchHH--HHHHHHHhcCChhHHHHHHHHHHhcCCC---------chhHHHHHHHHHhccchhHHHHHH
Q 040965 226 M-RSM-PF-EPDASVLG--ALLGACKIHGAVDLCHEVGRRLLELQPK---------HCGRYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 226 ~-~~~-~~-~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~ 291 (311)
+ ... .. ......+. ....++...|+.+.|...++.+....-. ..........++...|++++|.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~ 329 (355)
T cd05804 250 LADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALEL 329 (355)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHH
Confidence 1 111 11 11122232 4455678899999999999988752211 122333445567799999999999
Q ss_pred HHHHHHcc
Q 040965 292 RKAMVEAG 299 (311)
Q Consensus 292 ~~~m~~~~ 299 (311)
+.+.....
T Consensus 330 L~~al~~a 337 (355)
T cd05804 330 LGPVRDDL 337 (355)
T ss_pred HHHHHHHH
Confidence 98887643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=94.30 Aligned_cols=235 Identities=11% Similarity=0.033 Sum_probs=134.3
Q ss_pred HHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc
Q 040965 49 FKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV 128 (311)
Q Consensus 49 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 128 (311)
+-.+...| +.|+..||..++. +++..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+.
T Consensus 13 la~~e~~g--i~PnRvtyqsLia---rYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 13 LALHEISG--ILPNRVTYQSLIA---RYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred HHHHHHhc--CCCchhhHHHHHH---HHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 34444455 5566666666654 333355555555 5555555555555555555555555555555443
Q ss_pred cchHhhHHHHHHHHHcCCCHHH-----------------------HHHHHHHHHH-cCCCCcHHHHHHHHHHHHccccHH
Q 040965 129 IKDVCTWNAMISSLASNSREKE-----------------------ALVMFDEMKE-KGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~-----------------------a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
.|.+.+|+.|..+|...||... ...++..+.- .+.-||..+ ++.-..-.|.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwa 156 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWA 156 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHH
Confidence 4555566666666666655433 2222221110 111222221 222234456666
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGR-AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.+++++..+-......|... .++-+.. ...+++-..+.+...-.|++.+|..++..-...|+++.|..++.+|.+
T Consensus 157 qllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 157 QLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 66666655543211222221 2332222 334555555555553369999999999999999999999999999998
Q ss_pred cC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCcc
Q 040965 264 LQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAY 306 (311)
Q Consensus 264 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 306 (311)
.+ |-....|..|+-+ .++..-+..+++.|.+.|+.|+...
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT 273 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSET 273 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcch
Confidence 66 4444334444433 7888889999999999999987653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-09 Score=89.43 Aligned_cols=217 Identities=14% Similarity=0.045 Sum_probs=173.5
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+- +....-.|.-.|...|.-.+|.+.
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3888999999999999886 447889999999999999999999999888444 566777788889999999999999
Q ss_pred HHHHHHcCCCC--------cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 040965 155 FDEMKEKGLRA--------NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226 (311)
Q Consensus 155 ~~~m~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (311)
++.......+- +...-.. ..+.......+..++|-++....+..+|+.++..|.-.|--.|++++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 99886542110 0000000 1233344455666777666665465577778999999999999999999999
Q ss_pred HhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 227 RSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 227 ~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+.+ .++| |...|+.|...++...+.++|...|++++++.|.-..+...|+-+|...|.+++|.+.|-+.+.
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 998 6677 5588999998999999999999999999999999888999999999999999999999877654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.9e-09 Score=95.50 Aligned_cols=210 Identities=14% Similarity=0.149 Sum_probs=173.1
Q ss_pred HHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 89 HGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK--------DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
|++.+... |-+...|-..|......+++++|.++++++... -...|.++++.-..-|.-+...++|+++.+
T Consensus 1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence 44444432 445678888999999999999999999998433 235677788777778888999999999887
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---Ccc
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP---DAS 236 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~ 236 (311)
.- . ....|..|...|.+.+..++|.++++.|.++++ -....|...++.+.++.+-+.|.++++++ ..-| ...
T Consensus 1526 yc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1526 YC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred hc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 52 2 345788999999999999999999999999866 45568999999999999999999999887 3333 344
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCC
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 303 (311)
...-.+..-.+.|+.+.+..+|+..+.-.|.....|+.+++.-.+.|+.+.++.+|++....++.+-
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 4555666667899999999999999999999888999999999999999999999999999888654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-07 Score=77.90 Aligned_cols=269 Identities=12% Similarity=0.029 Sum_probs=171.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (311)
...|..+...+...|+.+.+.+.+.+..+..+ ..++...... +.+..... .|+++++.+.+++..+.. +.+...+.
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~-~~a~~~~~-~g~~~~A~~~~~~~l~~~-P~~~~a~~ 81 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-ARATERERAH-VEALSAWI-AGDLPKALALLEQLLDDY-PRDLLALK 81 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-cCCCHHHHHH-HHHHHHHH-cCCHHHHHHHHHHHHHHC-CCcHHHHH
Confidence 45677778888888999988887777665431 2233322222 23322333 788999999999998874 33444443
Q ss_pred H---HHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 106 A---LIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 106 ~---l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
. +.......+....+.+.+...... .......+...+...|++++|...+++..+.. +.+...+..+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 2 222222345566666666553222 23344556678889999999999999998874 3456778888889999
Q ss_pred cccHHHHHHHHHHhhccCCCccch--hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHH------HHHHHHHhcCC
Q 040965 180 AQLVELGLELFHSMLGKFEVVPIM--EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLG------ALLGACKIHGA 250 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~------~l~~~~~~~g~ 250 (311)
.|++++|...+++.+......|+. ..|..+...+...|++++|.+++++. ...|...... .++.-+...|.
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 240 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGH 240 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCC
Confidence 999999999999988642222332 34557888999999999999999997 3233222221 22333445555
Q ss_pred hhHHHHH--HHHH-HhcCCCch--hHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 251 VDLCHEV--GRRL-LELQPKHC--GRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 251 ~~~a~~~--~~~~-~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.+.+.++ +... ....|... ........++...|+.++|...++.+....
T Consensus 241 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 241 VDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred CChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4444443 2111 11112221 122356777889999999999999987643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.17 E-value=6e-09 Score=81.21 Aligned_cols=182 Identities=10% Similarity=-0.045 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---h---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH--HHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---D---VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE--ITFV 171 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 171 (311)
....+..++..+.+.|++++|...|+++... + ..++..+..++...|++++|...++++.+....... .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4566677888888899999999999887432 2 245677788888999999999999998875321111 2455
Q ss_pred HHHHHHHcc--------ccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHH
Q 040965 172 AVLTACARA--------QLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALL 242 (311)
Q Consensus 172 ~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 242 (311)
.+..++... |+.+.|.+.++.+.+. .|+. ..+..+.... ....... .....+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~~-----------~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRLA-----------GKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHHH-----------HHHHHHH
Confidence 555556554 7788888888888754 3432 2222221110 0111000 0112455
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCc---hhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 243 GACKIHGAVDLCHEVGRRLLELQPKH---CGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
..+...|++++|...++++.+..|++ ...+..++.++...|++++|..+++.+....
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66889999999999999999876654 4688899999999999999999999887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-06 Score=73.54 Aligned_cols=119 Identities=14% Similarity=0.138 Sum_probs=65.1
Q ss_pred CChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC----CCCchHHHHHHHHHhhhhhhcCcchh
Q 040965 9 GDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL----VRPNEATYVSVLSSCAGLVNEGGLYL 84 (311)
Q Consensus 9 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~~~~ 84 (311)
|-.+-+..++++-++-++..-+..|..+++.+++++|.+.+......... .+.+...|.-+-...+...+.+.--.
T Consensus 152 ~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln 231 (835)
T KOG2047|consen 152 GLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN 231 (835)
T ss_pred CChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence 33344555555554445555555666666777777777766666543210 12233334333333233222222223
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
...+++.+...-..-=...|++|.+.|.+.|.+++|..+|++.
T Consensus 232 vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3344444443321122467899999999999999999999876
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-06 Score=73.88 Aligned_cols=283 Identities=13% Similarity=0.105 Sum_probs=147.4
Q ss_pred hhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHH---HHHHHhhhhhhc
Q 040965 6 VKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYV---SVLSSCAGLVNE 79 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~---~ll~~~~~~~~~ 79 (311)
...|+-++|....+..... +.+.|+.+.-.+....++++|++.|..+.. +.||....- +++. .+ -
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~----~~~dN~qilrDlslLQ--~Q---m 122 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK----IEKDNLQILRDLSLLQ--IQ---M 122 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh----cCCCcHHHHHHHHHHH--HH---H
Confidence 4567788888888777544 457899998888889999999999999987 445543321 1111 11 2
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc--------------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM-------------------------------- 127 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------------------------- 127 (311)
++++.......+..+.. +.....|..+..++.-.|+...|..++++.
T Consensus 123 Rd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 123 RDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 22444444444443331 112334444444444445555554444433
Q ss_pred ----------ccc--hH-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHHccccHHHHH-HHHHH
Q 040965 128 ----------VIK--DV-CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV-LTACARAQLVELGL-ELFHS 192 (311)
Q Consensus 128 ----------~~~--~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~-~~~~~ 192 (311)
... |. ..-.+-...+.+.+++++|..++..+... .||...|... ..++.+..+.-++. .+|..
T Consensus 202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111 11 11223344556677777777777777765 4554444433 33343233333333 55554
Q ss_pred hhccCCC--cc--------c--------------------hhhHHHHHHHHHhcCCHHH----HHHHHHhC-C-------
Q 040965 193 MLGKFEV--VP--------I--------------------MEHYGCVVDLLGRAGLLSE----AKEFMRSM-P------- 230 (311)
Q Consensus 193 ~~~~~~~--~~--------~--------------------~~~~~~l~~~~~~~g~~~~----A~~~~~~~-~------- 230 (311)
..+.+.. .| + +.++..+...|-.-...+- +..+...+ +
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 4322000 00 0 0011111111111110000 11111111 0
Q ss_pred -----CCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 231 -----FEPDASV--LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 231 -----~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
-+|.... +..++..+-..|+++.|..+++.++...|.-+..|..=++.+...|..++|..++++.++.+.
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence 1233322 334555677777888888888877777777666777777777777888887777777766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.1e-08 Score=74.42 Aligned_cols=151 Identities=11% Similarity=0.112 Sum_probs=83.7
Q ss_pred HHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHH
Q 040965 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
+-.|...|+++.+....+.+..+. ..+...++.+++...++...+.+ +.+...|..+...|...|+++.|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345666677666544433222221 01122455566666666655542 335666666666666777777777
Q ss_pred HHHHHhhccCCCccchhhHHHHHHH-HHhcCC--HHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDL-LGRAGL--LSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
..|++..+. .+.+...+..+..+ +...|+ .++|.+++++. ...| +...+..+...+...|++++|...|+++.
T Consensus 94 ~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777666643 12234455555554 345555 36666666666 3344 33455555556666677777777777766
Q ss_pred hcCCCch
Q 040965 263 ELQPKHC 269 (311)
Q Consensus 263 ~~~~~~~ 269 (311)
+..|++.
T Consensus 172 ~l~~~~~ 178 (198)
T PRK10370 172 DLNSPRV 178 (198)
T ss_pred hhCCCCc
Confidence 6665544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.4e-07 Score=74.49 Aligned_cols=286 Identities=14% Similarity=0.126 Sum_probs=164.2
Q ss_pred hhhhcCChHHHHHHHHHhc---cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhc
Q 040965 4 GYVKNGDMDSAILLFENML---KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNE 79 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 79 (311)
+.+..|+++.|+..|-+.+ ++|.+.|+.-..+|++.|++++|++--.+..+ +.|+. ..|...-.++. + .
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~----l~p~w~kgy~r~Gaa~~--~-l 83 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR----LNPDWAKGYSRKGAALF--G-L 83 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh----cCCchhhHHHHhHHHHH--h-c
Confidence 4567899999999998873 33677888888889999999998887777766 66764 44554444322 2 5
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhc---------------------------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKV--------------------------------------------- 114 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------------------------------- 114 (311)
|++++|+..|.+-++.. +.|...++.+.+++...
T Consensus 84 g~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred ccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 66888888888877764 33555555555554111
Q ss_pred ------CCHHHHHHHHHHc----------------ccc------------h----------HhhHHHHHHHHHcCCCHHH
Q 040965 115 ------GCLERAIRVFKSM----------------VIK------------D----------VCTWNAMISSLASNSREKE 150 (311)
Q Consensus 115 ------g~~~~A~~~~~~~----------------~~~------------~----------~~~~~~l~~~~~~~~~~~~ 150 (311)
.++..|...+... ..| | ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 0011111111110 000 0 0012233444444455555
Q ss_pred HHHHHHHHHHc---------------------------------CCCCcHHHHH-------HHHHHHHccccHHHHHHHH
Q 040965 151 ALVMFDEMKEK---------------------------------GLRANEITFV-------AVLTACARAQLVELGLELF 190 (311)
Q Consensus 151 a~~~~~~m~~~---------------------------------~~~~~~~~~~-------~l~~~~~~~~~~~~a~~~~ 190 (311)
|.+.+...... |.. ...-|+ .+..++.+.++.+.|+.+|
T Consensus 243 a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 243 AIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 55555444332 111 011122 1223444556666777766
Q ss_pred HHhhccCCCccchhhH-------------------------HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 191 HSMLGKFEVVPIMEHY-------------------------GCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 191 ~~~~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
.+.+.. ...|+...- -.-...+.+.|++..|...|.++ ...| |...|..-.-
T Consensus 322 ~kaLte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAa 400 (539)
T KOG0548|consen 322 QKALTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAA 400 (539)
T ss_pred HHHhhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 665543 222221110 01123355667777777777776 3334 4566666767
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
+|.+.|.+..|..-.+..++++|+....|..=+.++....+|++|.+.|++-++.+
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777777777777777777777776677766777777777777777777766654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-06 Score=65.86 Aligned_cols=175 Identities=13% Similarity=0.065 Sum_probs=92.1
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 040965 88 VHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167 (311)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 167 (311)
+.+.+.......+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.+.. +.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---ED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hH
Confidence 33444443333333333333455666666776666666522 22222223344556666666666666666532 34
Q ss_pred HHHHHHHHHHH----ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHH
Q 040965 168 ITFVAVLTACA----RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGAL 241 (311)
Q Consensus 168 ~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l 241 (311)
.|.+-|..++. ..+.+..|.-+|+++.++ .+|++.+.+....++...|++++|..+++.. ....++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 45554444433 344566666666666542 4566666666666666666777776666666 322344444444
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhcCCCch
Q 040965 242 LGACKIHGAV-DLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 242 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 269 (311)
+-.-...|.. +...+.+.++....|.++
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 4444444443 333455556555555553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.7e-08 Score=75.74 Aligned_cols=171 Identities=17% Similarity=0.076 Sum_probs=114.1
Q ss_pred hhhhcCcchhHHHHHHHHhhccCC-c-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccch---H---hhHHHHHHHHHcC-
Q 040965 75 GLVNEGGLYLGKQVHGYILRNEIV-L-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKD---V---CTWNAMISSLASN- 145 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~l~~~~~~~- 145 (311)
.+.+.|+++.|...++++.+..+. | ....+..+..++.+.|++++|+..++++.+.+ . .++..+..++...
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~ 121 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQI 121 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhc
Confidence 333478899999999999886432 1 12467778999999999999999999984432 2 2455566666654
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 146 -------SREKEALVMFDEMKEKGLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 146 -------~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
|++++|.+.++.+.+. .|+ ...+..+..... ... ... .....+...|.+.|
T Consensus 122 ~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~-------~~~--------~~~~~~a~~~~~~g 180 (235)
T TIGR03302 122 DRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN-------RLA--------GKELYVARFYLKRG 180 (235)
T ss_pred ccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH-------HHH--------HHHHHHHHHHHHcC
Confidence 7899999999999876 343 333322221110 000 000 01224566778888
Q ss_pred CHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 218 LLSEAKEFMRSM-PFEPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
++++|...+++. ...|+ ...+..+..++...|++++|..+++.+....|
T Consensus 181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 888888888877 33333 35667777888888888888888887766554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-06 Score=71.37 Aligned_cols=119 Identities=20% Similarity=0.184 Sum_probs=66.8
Q ss_pred HHHHHHHHccccHHHHHHHHH--------HhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCcch
Q 040965 171 VAVLTACARAQLVELGLELFH--------SMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-----PFEPDASV 237 (311)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~ 237 (311)
...+......|+++.|.+++. .+.+- +..|. +...++..+.+.++-+.|..++.+. .-.+....
T Consensus 380 L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~ 456 (652)
T KOG2376|consen 380 LLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIA 456 (652)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchH
Confidence 333444556667777776666 33322 33333 3444555566666555555554443 11122222
Q ss_pred HHHHH----HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 238 LGALL----GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 238 ~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
...++ ..-.+.|+-++|..+++++.+.+|++..+...++.+|++. +.+.|..+-+
T Consensus 457 l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 457 LLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 22222 2334567788888888888887777777777777777766 4555655443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-07 Score=68.82 Aligned_cols=244 Identities=10% Similarity=0.007 Sum_probs=155.3
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHh
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (311)
++-+.-.|.+..++..-............+...|.+.+ .++ .. ......+.... .|.......+.....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~rayl----Alg---~~---~~~~~eI~~~~-~~~lqAvr~~a~~~~ 83 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYL----ALG---QY---QIVISEIKEGK-ATPLQAVRLLAEYLE 83 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHH----Hcc---cc---ccccccccccc-CChHHHHHHHHHHhh
Confidence 34455667777777666665443111222333333333 222 11 22223333333 333444443444433
Q ss_pred hcCCHHHHHH-HHHHcccc----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHH
Q 040965 113 KVGCLERAIR-VFKSMVIK----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 113 ~~g~~~~A~~-~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
.-++.+.-.. +.+.+..+ +......-...|+..|++++|++...... +......=+..+.+..+.+-|.
T Consensus 84 ~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~ 157 (299)
T KOG3081|consen 84 LESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAE 157 (299)
T ss_pred CcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433333 33333222 22333334567889999999999987622 2223333345577889999999
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
+.+++|.+- . +..|.+.|..++.+ .+.+..|.-+|++| +..|+..+.+....++...|++++|..+++.+
T Consensus 158 ~~lk~mq~i---d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 158 KELKKMQQI---D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHHHHHcc---c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 999999742 3 44577777777764 45799999999999 47899999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHhccchhHHH-HHHHHHHHH
Q 040965 262 LELQPKHCGRYVVLSNIHAGLERWNRA-TDLRKAMVE 297 (311)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 297 (311)
+..+++++.+...++.+-...|+-.++ .+.+.++..
T Consensus 234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999999888887777776554 445555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-06 Score=79.63 Aligned_cols=292 Identities=10% Similarity=-0.032 Sum_probs=186.5
Q ss_pred hhhcCChHHHHHHHHHhcc---c-----c----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH--HHHHH
Q 040965 5 YVKNGDMDSAILLFENMLK---R-----D----VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT--YVSVL 70 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~---~-----~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~--~~~ll 70 (311)
+...|++++|...+..... . + ......+...+...|++++|...+++..+.. ...+... .....
T Consensus 419 ~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~ 496 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL--PLTWYYSRIVATSV 496 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCccHHHHHHHHHH
Confidence 4567889998888876621 1 1 1122334455678999999999999987632 1112111 11111
Q ss_pred HHhhhhhhcCcchhHHHHHHHHhhc----cC-CchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhh
Q 040965 71 SSCAGLVNEGGLYLGKQVHGYILRN----EI-VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCT 134 (311)
Q Consensus 71 ~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~ 134 (311)
.+.. ....|++++|...+++.... |. .....+...+...+...|++++|...+++.... ....
T Consensus 497 lg~~-~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 497 LGEV-HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHH-HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 1111 22378899999999887653 21 112345566778888999999999998876221 1223
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCC--cHHHHHHHHHHHHccccHHHHHHHHHHhhccC---CCccchhh-H
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEK--GLRA--NEITFVAVLTACARAQLVELGLELFHSMLGKF---EVVPIMEH-Y 206 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~-~ 206 (311)
+..+...+...|++++|...+.+.... ...+ ....+..+...+...|+.+.|...++...... +....... .
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 655 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANA 655 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHH
Confidence 445566677789999999999887543 1112 23445556667888999999999998875321 11111101 0
Q ss_pred -HHHHHHHHhcCCHHHHHHHHHhCCC-C-CCcch----HHHHHHHHHhcCChhHHHHHHHHHHhcC------CCchhHHH
Q 040965 207 -GCVVDLLGRAGLLSEAKEFMRSMPF-E-PDASV----LGALLGACKIHGAVDLCHEVGRRLLELQ------PKHCGRYV 273 (311)
Q Consensus 207 -~~l~~~~~~~g~~~~A~~~~~~~~~-~-p~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~ 273 (311)
...+..+...|+.+.|.+++..... . ..... +..+..++...|+.++|...++++.... +....+..
T Consensus 656 ~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 656 DKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 1122445568999999999877621 1 11111 2345567888999999999999988632 11234566
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 274 VLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.+..++.+.|+.++|...+.+..+..
T Consensus 736 ~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 736 LLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 78888999999999999999988754
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-07 Score=82.13 Aligned_cols=240 Identities=12% Similarity=0.103 Sum_probs=149.3
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...|..|+..+...+++++|.++.+...+ ..|+...+...... .... .++...+..+
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~----~~P~~i~~yy~~G~-l~~q-~~~~~~~~lv---------------- 87 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK----EHKKSISALYISGI-LSLS-RRPLNDSNLL---------------- 87 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----hCCcceehHHHHHH-HHHh-hcchhhhhhh----------------
Confidence 667899999999999999999999998877 56777665554443 1111 3222222222
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHccc--chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVI--KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 182 (311)
.++.......++.-...+...+.. .+...+..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... +
T Consensus 88 -~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 88 -NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred -hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 344444444444333333333321 244467778888888888888888888888775 33677788888888877 8
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHH---HHH--hcCCHHHHHHHHHhC----CCCCCcchHHHHHHHHHhcCChhH
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVD---LLG--RAGLLSEAKEFMRSM----PFEPDASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~--~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~ 253 (311)
+++|.+++.++... ..+..-|+.+.. -++ ...+++.-.++.+.+ +..--+.++..+...|...+++++
T Consensus 165 L~KA~~m~~KAV~~---~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 165 KEKAITYLKKAIYR---FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHHHHHHHHHHH---HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 88888888777643 111111111111 111 112222222222222 222333445555677788889999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+..+++.+++.+|.+..+...++.+|. +++.+ ...|++.
T Consensus 242 ~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~ 280 (906)
T PRK14720 242 VIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDY 280 (906)
T ss_pred HHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence 999999999999999889989999887 44444 3344433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-07 Score=82.15 Aligned_cols=237 Identities=18% Similarity=0.111 Sum_probs=156.5
Q ss_pred ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchH
Q 040965 22 LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV 101 (311)
Q Consensus 22 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 101 (311)
+.||.++|..+|.-|+..|+.+.|- +|.-|.-+. .+.+...++.++.+... .++.+.+. .|..
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks--Lpv~e~vf~~lv~sh~~---And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS--LPVREGVFRGLVASHKE---ANDAENPK-----------EPLA 83 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhccc--ccccchhHHHHHhcccc---cccccCCC-----------CCch
Confidence 5788999999999999999999998 999888777 77888889888875443 33344433 6788
Q ss_pred HHHHHHHHHHhhcCCHHH---HHHHHHHcccc-------hHhhH---------------HHHHHHHHcCCCHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLER---AIRVFKSMVIK-------DVCTW---------------NAMISSLASNSREKEALVMFD 156 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~-------~~~~~---------------~~l~~~~~~~~~~~~a~~~~~ 156 (311)
.+|..|...|...||+.. +.+.+..+... ...-| ...+.-..-.|.|+.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999654 33322222110 01111 122233334466666666665
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCC
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEP 233 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p 233 (311)
.+...... .++..++.-+.....+ ..++......-.+ .|++.+|..++++-...|+.+.|..++.+| |++-
T Consensus 164 ~~Pvsa~~---~p~~vfLrqnv~~ntp--vekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi 237 (1088)
T KOG4318|consen 164 KVPVSAWN---APFQVFLRQNVVDNTP--VEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI 237 (1088)
T ss_pred hCCccccc---chHHHHHHHhccCCch--HHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence 44321100 0111134444443332 2333333322213 689999999999999999999999999999 6666
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCchhHHHHHHHHHhccchh
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLEL--QPKHCGRYVVLSNIHAGLERW 285 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~ 285 (311)
+..-|..|+-+ .++...++.+++-|.+. .|++. ++...+..+...|..
T Consensus 238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~se-T~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSE-TQADYVIPQLSNGQT 287 (1088)
T ss_pred ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcc-hhHHHHHhhhcchhh
Confidence 77777777655 78888888898888874 46654 777666666665553
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.8e-08 Score=79.38 Aligned_cols=209 Identities=15% Similarity=0.144 Sum_probs=103.0
Q ss_pred hhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc
Q 040965 5 YVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 81 (311)
+.+.|++.+|.-.|+..++. +...|--|......+++-..|+..+.++.+ +.|+.... |+.....+.+.|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~----LdP~Nlea--LmaLAVSytNeg~ 368 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE----LDPTNLEA--LMALAVSYTNEGL 368 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh----cCCccHHH--HHHHHHHHhhhhh
Confidence 55677777777777766433 445777777777777777777777777766 45554432 2222223333444
Q ss_pred chhHHHHHHHHhhccCCc--------hHHHHHHHHHHHhhcCCHHHHHHHHHHc-----ccchHhhHHHHHHHHHcCCCH
Q 040965 82 LYLGKQVHGYILRNEIVL--------SVFMGTALIDLYGKVGCLERAIRVFKSM-----VIKDVCTWNAMISSLASNSRE 148 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~ 148 (311)
-..|.+.++.-+...++- +...-+. ..+.....+....++|-++ .+.|+..+..|.-.|-..|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 556666665554432110 0000000 0111112222333333333 113444555555555555555
Q ss_pred HHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHH
Q 040965 149 KEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFM 226 (311)
Q Consensus 149 ~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 226 (311)
++|.+.|+..+.. .| |..+||.|...+....+.++|+..|.+++ .+.|+ +.+...|.-+|...|.+.+|.+.|
T Consensus 447 draiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 447 DRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred HHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 5555555555443 23 44555555555555555555555555555 23443 233333444455555555555444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.5e-08 Score=68.27 Aligned_cols=121 Identities=8% Similarity=-0.062 Sum_probs=81.0
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040965 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 231 (311)
.++++..+. .|+. +......+...|++++|...|+.+... -+.+...+..+..++...|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444443 3432 444566677778888888888777643 2335566777777777888888888888777 43
Q ss_pred CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 232 EP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 232 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
.| +...+..+..++...|++++|...|+++++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 4566667777777788888888888888888888776665554443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-05 Score=68.49 Aligned_cols=192 Identities=11% Similarity=0.078 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccch-------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-----------CC
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKD-------VCTWNAMISSLASNSREKEALVMFDEMKEK-----------GL 163 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----------~~ 163 (311)
..|..+...|-..|+++.|..+|++..+-+ ..+|-.....=.+..+++.|.++++..... +.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 344556666666777777777777663331 234444445555666666676666654321 01
Q ss_pred CC------cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C-C-CCC
Q 040965 164 RA------NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P-F-EPD 234 (311)
Q Consensus 164 ~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~-~p~ 234 (311)
++ +...|...++..-..|-++....+++++++-.-..|- ........+..+.-++++.++|++- . + .|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPq--ii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~ 545 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQ--IIINYAMFLEEHKYFEESFKAYERGISLFKWPN 545 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc
Confidence 11 1123444444444556666666667666643111222 2222223344566778888888776 2 2 234
Q ss_pred c-chHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCch--hHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 235 A-SVLGALLGACKI---HGAVDLCHEVGRRLLELQPKHC--GRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 235 ~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+ ..|+..+.-+.+ ....+.|..+|+++++.-|+.. ..|......-.+.|....|+.++++.
T Consensus 546 v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 546 VYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3 455555544332 2367899999999998776532 12333334444567778888888774
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-08 Score=70.54 Aligned_cols=110 Identities=13% Similarity=-0.027 Sum_probs=93.7
Q ss_pred HHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 187 LELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
..++++.++ ..|+. +..+...+...|++++|.+.|+.. ...| +...+..+...+...|++++|...|+++.+.
T Consensus 13 ~~~~~~al~---~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345666663 45653 556788889999999999999998 5555 5577788888899999999999999999999
Q ss_pred CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 265 QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+|+++.++..++.++...|++++|...|+...+....
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999886554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4.2e-07 Score=68.55 Aligned_cols=155 Identities=11% Similarity=0.064 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 136 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
..+-..+...|+-+....+....... .+.|.......+....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44445555566666666665554322 122334444466666666777777777766654 345566666666666777
Q ss_pred cCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 216 AGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 216 ~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.|++++|..-|.+. .+.|+ ....+.+.-.+.-.|+.+.|..++.+.....+.+..+-..|..+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 77777776666665 44443 34455666666666777777777766666555555566666666666677666666543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-07 Score=68.09 Aligned_cols=148 Identities=12% Similarity=0.094 Sum_probs=98.3
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
..|...|+++.+....+.+.. |. ..+...++.+++...++..++. -+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCH
Confidence 456777777776544432211 11 0122356667777777776653 344566777777888888888
Q ss_pred HHHHHHHHhC-CCCC-CcchHHHHHHH-HHhcCC--hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 220 SEAKEFMRSM-PFEP-DASVLGALLGA-CKIHGA--VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 220 ~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
++|...|++. ...| +...+..+..+ +...|+ .++|..+++++++.+|++..++..++..+.+.|++++|...|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888777 4455 34555555554 355566 47888888888888888777888888888888888888888888
Q ss_pred HHHccCC
Q 040965 295 MVEAGIR 301 (311)
Q Consensus 295 m~~~~~~ 301 (311)
+.+...+
T Consensus 170 aL~l~~~ 176 (198)
T PRK10370 170 VLDLNSP 176 (198)
T ss_pred HHhhCCC
Confidence 7776554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.7e-06 Score=68.67 Aligned_cols=211 Identities=11% Similarity=-0.017 Sum_probs=117.6
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCC--HHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG-CLERAIRVFKSMVIK---DVCTWNAMISSLASNSR--EKEALVMF 155 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~--~~~a~~~~ 155 (311)
.++|+.+..++++.. +-+..+|+....++...| ++++++..++++... +..+|+.-...+.+.|+ .++++.++
T Consensus 53 serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 53 SPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 444555555444432 122334444444444444 355666666555322 33344444333434443 24566666
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CC----HHHHHHHHHh
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA---GL----LSEAKEFMRS 228 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~~~~ 228 (311)
+++.+.. +-+..+|.....++...|+++++++.++++++. + .-|...|+.....+.+. |. .+++.++..+
T Consensus 132 ~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~ 208 (320)
T PLN02789 132 RKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTID 208 (320)
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHH
Confidence 6666553 225666666666666667777777777777654 1 22334555444443333 22 2345555544
Q ss_pred C-CCCC-CcchHHHHHHHHHhc----CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc------------------h
Q 040965 229 M-PFEP-DASVLGALLGACKIH----GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE------------------R 284 (311)
Q Consensus 229 ~-~~~p-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~ 284 (311)
+ ...| |...|+.+...+... +...+|...+.++...+|.++.+...|++.|+... .
T Consensus 209 aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (320)
T PLN02789 209 AILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSD 288 (320)
T ss_pred HHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcccccccc
Confidence 4 4444 456677666666552 34566888888887778888878888888887532 2
Q ss_pred hHHHHHHHHHHH
Q 040965 285 WNRATDLRKAMV 296 (311)
Q Consensus 285 ~~~A~~~~~~m~ 296 (311)
.++|.++++.+.
T Consensus 289 ~~~a~~~~~~l~ 300 (320)
T PLN02789 289 STLAQAVCSELE 300 (320)
T ss_pred HHHHHHHHHHHH
Confidence 367888888874
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-09 Score=54.65 Aligned_cols=33 Identities=30% Similarity=0.395 Sum_probs=28.2
Q ss_pred ccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 95 NEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
+|+.||..+|++|+++|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367888888888888888888888888888887
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-06 Score=78.05 Aligned_cols=195 Identities=11% Similarity=0.076 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc--hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN--EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (311)
...|-..|......++.++|.++.++++.. +.+. ..-.|.++.......--|.-+...++|+++.+.. ....+
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t---IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT---INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh---CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 445666666666666777777776666543 2221 1112222211101111222344455555554432 11234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHH
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN---EITFVAVLTAC 177 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~ 177 (311)
|..|...|.+.+.+++|.++++.|.+. ....|...+..+.++++-+.|..++.+..+. -|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 455555555555555555555555333 3345555555555555555555555554443 222 12222333334
Q ss_pred HccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+.|+.+++..+|+..+..+ +--...|+..++.-.++|+.+.+..+|++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 45555555555555555431 112234555555555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.5e-09 Score=54.04 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=22.0
Q ss_pred CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 198 EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667667777777777777777777766665
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-06 Score=64.21 Aligned_cols=263 Identities=14% Similarity=0.102 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHH-H
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF-M 103 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 103 (311)
++.-.-.+.+.+...|++..|+..|....+ -|+..|.++..-...+.-.|+-..|+.-+.+.++. +||-. .
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve------~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A 108 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVE------GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA 108 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHc------CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH
Confidence 455566788899999999999999999965 34445555554333333356677788888888775 45532 2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccchH------h------------hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIKDV------C------------TWNAMISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~------------~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
...-...+.+.|.++.|+.=|+.+...++ . .....+..+...|+...|++....+.+. .+.
T Consensus 109 RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~W 187 (504)
T KOG0624|consen 109 RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPW 187 (504)
T ss_pred HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-Ccc
Confidence 22335678899999999999998843311 1 1122344556789999999999999886 244
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHH----
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGA---- 240 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~---- 240 (311)
|...|..-..+|...|++..|+.-++.+.+- ...+..++--+-..+...|+.+.++...++- ++.||...+-.
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askL--s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk 265 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKL--SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK 265 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence 8888888899999999999999888887643 2334556666777888999999998887775 77888744322
Q ss_pred H-------H--HHHHhcCChhHHHHHHHHHHhcCCCch----hHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 241 L-------L--GACKIHGAVDLCHEVGRRLLELQPKHC----GRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 241 l-------~--~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
| - ......+++.++....+...+..|..+ ..+..+..++...|++.+|++.-.+..+.
T Consensus 266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~ 336 (504)
T KOG0624|consen 266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI 336 (504)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc
Confidence 1 1 123567888899999999998888732 23446777888899999999988888764
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.87 E-value=8.2e-06 Score=64.48 Aligned_cols=151 Identities=16% Similarity=0.114 Sum_probs=81.7
Q ss_pred hhhcCChHHHHHHHHHhcccc---H-HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 5 YVKNGDMDSAILLFENMLKRD---V-VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
+....++..|+.+++.-...+ . .+---+..++.+.|++++|+..|.-+.+.. .|+...+..+..+ ..- .|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~---~~~~el~vnLAcc--~Fy-Lg 105 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD---DAPAELGVNLACC--KFY-LG 105 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC---CCCcccchhHHHH--HHH-HH
Confidence 455678888888887763221 1 122224567788999999999999888754 4444444333322 222 33
Q ss_pred cchhHHHHHHHHhhccC-------------------------CchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--hHh
Q 040965 81 GLYLGKQVHGYILRNEI-------------------------VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK--DVC 133 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~ 133 (311)
.+.+|..+-....+... ..+..-..+|.+.....-.+++|++++.++... .-.
T Consensus 106 ~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~ 185 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI 185 (557)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh
Confidence 36666665544432210 001111122333333344566677777666333 222
Q ss_pred hHHH-HHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 134 TWNA-MISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 134 ~~~~-l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
..|. +.-+|.+..-++.+.++++--.+.
T Consensus 186 alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 186 ALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 3332 334566777777777777766554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-05 Score=75.16 Aligned_cols=292 Identities=9% Similarity=-0.010 Sum_probs=181.4
Q ss_pred hhcCChHHHHHHHHHhcc----ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC----CCchHHHHHHHHHhhhhh
Q 040965 6 VKNGDMDSAILLFENMLK----RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV----RPNEATYVSVLSSCAGLV 77 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~p~~~~~~~ll~~~~~~~ 77 (311)
...|+++.+..+++.+.. .++.........+...|++++|...+......-... .|....-...+.+.....
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 345666666666665521 122233344556678899999999998875421001 111111111122222223
Q ss_pred hcCcchhHHHHHHHHhhccCCch----HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHc
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLS----VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLAS 144 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~ 144 (311)
.|++++|...+++..+.-...+ ....+.+...+...|++++|...+++.... ...++..+...+..
T Consensus 465 -~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 465 -DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred -CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 7889999999988776321112 234466677788899999999999887321 12345566778888
Q ss_pred CCCHHHHHHHHHHHHHc----CCC--C-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC---CCccchhhHHHHHHHHH
Q 040965 145 NSREKEALVMFDEMKEK----GLR--A-NEITFVAVLTACARAQLVELGLELFHSMLGKF---EVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 145 ~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~~~~ 214 (311)
.|++++|...+++.... +.. + ....+..+...+...|++++|...+++..... +.......+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998886542 211 1 23344555666778899999999998875421 11112334555667788
Q ss_pred hcCCHHHHHHHHHhC----CCCCCcchHH-----HHHHHHHhcCChhHHHHHHHHHHhcCCCchh----HHHHHHHHHhc
Q 040965 215 RAGLLSEAKEFMRSM----PFEPDASVLG-----ALLGACKIHGAVDLCHEVGRRLLELQPKHCG----RYVVLSNIHAG 281 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~----~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~ 281 (311)
..|++++|.+.+++. ........+. ..+..+...|+.+.|..++.......+.... .+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 999999999888776 1111111111 1123345688999999998776543222211 24567788899
Q ss_pred cchhHHHHHHHHHHHHc
Q 040965 282 LERWNRATDLRKAMVEA 298 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~ 298 (311)
.|++++|...+++....
T Consensus 704 ~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 704 LGQFDEAEIILEELNEN 720 (903)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999988764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-05 Score=65.29 Aligned_cols=236 Identities=11% Similarity=0.023 Sum_probs=154.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA 106 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (311)
++..+-..+...++.++|+.+.+++++ +.|+..+ |+..-.++..+++ .+++++..++++.+.. +.+..+|+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~----lnP~~ytaW~~R~~iL~~L~~--~l~eeL~~~~~~i~~n-pknyqaW~~ 111 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR----LNPGNYTVWHFRRLCLEALDA--DLEEELDFAEDVAEDN-PKNYQIWHH 111 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHHcch--hHHHHHHHHHHHHHHC-CcchHHhHH
Confidence 455556666778899999999999987 5676554 3322222222221 3788999999988876 345566776
Q ss_pred HHHHHhhcCCH--HHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc-
Q 040965 107 LIDLYGKVGCL--ERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA- 180 (311)
Q Consensus 107 l~~~~~~~g~~--~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~- 180 (311)
....+.+.|+. +++..+++++... +..+|+....++...|+++++++.++++.+.+.. +...|+.....+.+.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~ 190 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSP 190 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcc
Confidence 65556666653 6778888777443 6678888888888889999999999999887543 556666665555443
Q ss_pred --cc----HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc----CCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc
Q 040965 181 --QL----VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA----GLLSEAKEFMRSM-PFEP-DASVLGALLGACKIH 248 (311)
Q Consensus 181 --~~----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~ 248 (311)
|. .+....+..+++.. .+-|...|+.+...+... ++..+|.+.+.+. ...| +......|+..|...
T Consensus 191 ~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 191 LLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 22 24677777677653 233556787777777663 4456688887776 3344 445666677777642
Q ss_pred C------------------ChhHHHHHHHHHHhcCCCchhHHH
Q 040965 249 G------------------AVDLCHEVGRRLLELQPKHCGRYV 273 (311)
Q Consensus 249 g------------------~~~~a~~~~~~~~~~~~~~~~~~~ 273 (311)
. ..++|.++++.+.+.+|-...-|.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir~~yw~ 311 (320)
T PLN02789 269 LQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVADPMRRNYWA 311 (320)
T ss_pred hccchhhhhhhhccccccccHHHHHHHHHHHHhhCcHHHHHHH
Confidence 2 235677777777555665443333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-06 Score=78.05 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=118.6
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGC 208 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 208 (311)
++..+..|.....+.|.+++|..+++...+. .| +......+...+.+.+++++|+...++.+.. .| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence 5778888888899999999999999988876 55 4567777888899999999999999998853 44 4456677
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhH
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 286 (311)
+..++.+.|++++|.++|+++ .-.|+ ..++.++...+...|+.++|...|+++.+...+....|+.++ ++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHH
Confidence 788888999999999999998 22343 577788888888999999999999999886655445555443 2334
Q ss_pred HHHHHHHHHHHc
Q 040965 287 RATDLRKAMVEA 298 (311)
Q Consensus 287 ~A~~~~~~m~~~ 298 (311)
.-..+++++.-.
T Consensus 234 ~~~~~~~~~~~~ 245 (694)
T PRK15179 234 ADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHcCcc
Confidence 445555555433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.3e-06 Score=65.12 Aligned_cols=284 Identities=13% Similarity=0.067 Sum_probs=170.9
Q ss_pred CChHHHHHHHHHhcccc--HHHHH-HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh--hhhhcCcch
Q 040965 9 GDMDSAILLFENMLKRD--VVSWT-SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA--GLVNEGGLY 83 (311)
Q Consensus 9 g~~~~A~~~~~~~~~~~--~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~~~ 83 (311)
-.+++|++++.++...+ ....| .+.-+|.+..-++-+.++++-.++ ..||+..-..+. +|. ++- .|+..
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~----q~pdStiA~NLk-acn~fRl~-ngr~a 238 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR----QFPDSTIAKNLK-ACNLFRLI-NGRTA 238 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH----hCCCcHHHHHHH-HHHHhhhh-ccchh
Confidence 45789999999985543 33333 355667888888888888888877 446654333222 221 221 22111
Q ss_pred hHH------------HHHHHHhhcc------------CCch-----HHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhh
Q 040965 84 LGK------------QVHGYILRNE------------IVLS-----VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCT 134 (311)
Q Consensus 84 ~a~------------~~~~~~~~~~------------~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 134 (311)
+.+ ...+.+.+.+ +-|+ +.....|+-.|.+.+++.+|..+..++.+.++.-
T Consensus 239 e~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~E 318 (557)
T KOG3785|consen 239 EDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYE 318 (557)
T ss_pred HHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHH
Confidence 110 0111122111 1111 1233456667889999999999999886655554
Q ss_pred HHHHHHHHHcCCC-------HHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH
Q 040965 135 WNAMISSLASNSR-------EKEALVMFDEMKEKGLRANE-ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY 206 (311)
Q Consensus 135 ~~~l~~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (311)
|-.-.-.+...|+ ..-|...|.-.-+.+..-|. .--.++..++.-..++++.+.+++.+..- -...|...+
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~ 397 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNL 397 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhh
Confidence 4443333333333 44444445443333332222 12345556666777889999998888653 223333333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCchh-HHHHHHHHHhcc
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALL-GACKIHGAVDLCHEVGRRLLELQPKHCG-RYVVLSNIHAGL 282 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 282 (311)
.+..+++..|++.+|+++|-.+ +-+ .|..+|.+++ ++|.+.+.++.|..++-++- .|.+.. ....+..-|.+.
T Consensus 398 -N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 398 -NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKA 474 (557)
T ss_pred -HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHH
Confidence 4688999999999999999888 322 4556666554 67889999999887765532 233322 333455678889
Q ss_pred chhHHHHHHHHHHHHccCCC
Q 040965 283 ERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~~ 302 (311)
+.+--|.+.|+++...++.|
T Consensus 475 ~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHhhhHHHccCCCc
Confidence 99999999998888766554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.8e-07 Score=66.64 Aligned_cols=134 Identities=16% Similarity=-0.013 Sum_probs=113.0
Q ss_pred CC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHH
Q 040965 164 RA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGA 240 (311)
Q Consensus 164 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 240 (311)
.| |... ..+-..+...|+-+....+....... ...+......++....+.|++.+|...+++. .-++|...|+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 44 3444 66677888899999998888886542 3445556666889999999999999999999 54567789999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+.-+|.+.|+++.|..-|.++.++.|.++.+++.|+..|.-.|+.+.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999988776543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.4e-07 Score=77.64 Aligned_cols=191 Identities=10% Similarity=0.040 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
|-...-..+...+.+.|-+..|..+|++. ..|.-.|.+|...|+..+|..+..+..+. +||...|..+.+...
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33334445566666667777777766654 23444566666667777777766665552 556666666655544
Q ss_pred ccc----------------------------cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 179 RAQ----------------------------LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 179 ~~~----------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
... +++++.+.|+.-.+.... -..+|-.+..+..+.++++.|.+.|..-
T Consensus 469 d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred ChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 444 444444444444332111 2235655666666777777777777665
Q ss_pred CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 230 PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 230 ~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
...||. ..|+.+-.+|.+.|+-.+|...++++.+.+-.+...|...+....+.|.+++|.+.+.++.+.
T Consensus 547 tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 547 TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 445544 677888777888888888888888887766666667777777777788888888887777654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-06 Score=74.59 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=96.4
Q ss_pred HHHHHhhcCCHHHHHHHHHHcccchH--hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVIKDV--CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
.+.+......|.+|+.+++.+....+ .-|..+...|...|+++.|.++|-+. ..++-.|..|.+.|+++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 34555666778888888887755543 34677788899999999999988653 23556677899999999
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
+|.++-.+.. |.......|-+-..-+-+.|++.+|.++|-.++ .|+. -|..|-+.|..+..+++..+
T Consensus 809 da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~-----aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 809 DAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDK-----AIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchH-----HHHHHHhhCcchHHHHHHHH
Confidence 9988877775 445556667666667778888888888877775 4443 34566666766666666554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-07 Score=65.46 Aligned_cols=100 Identities=10% Similarity=-0.048 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
.....+...+...|++++|...++.+... .+.+...+..+..++...|++++|...+++. ...| +...+..+...+
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 33444555556666666666666666542 1224445555566666666666666666555 2233 334444455556
Q ss_pred HhcCChhHHHHHHHHHHhcCCCch
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
...|+++.|...++++.+..|++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 96 LALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred HHcCCHHHHHHHHHHHHHhccccc
Confidence 666666666666666666666554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-05 Score=67.67 Aligned_cols=205 Identities=14% Similarity=0.009 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL 107 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (311)
+.....-.+...|+-++|........+.+ .-+.+.|+.+- ...+. ..++++|++.|...++.+ +.|...+.-+
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d---~~S~vCwHv~g-l~~R~--dK~Y~eaiKcy~nAl~~~-~dN~qilrDl 115 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRND---LKSHVCWHVLG-LLQRS--DKKYDEAIKCYRNALKIE-KDNLQILRDL 115 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccC---cccchhHHHHH-HHHhh--hhhHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 33333344455666666666666655532 12233333322 11122 333666666666666654 3355555555
Q ss_pred HHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHH------HH
Q 040965 108 IDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLT------AC 177 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~------~~ 177 (311)
.-.-++.|+++........... .....|..++.++.-.|++..|..++++..+.. -.|+...+..... ..
T Consensus 116 slLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~ 195 (700)
T KOG1156|consen 116 SLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQIL 195 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHH
Confidence 5555555666655555544422 234456666666666677777777766665543 1344443332221 23
Q ss_pred HccccHHHHHHHHHHhhccCCCccchhh-HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVPIMEH-YGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALL 242 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 242 (311)
.+.|..+.|.+.+..-... ..|-.. -..-...+.+.+++++|..++..+ ...||...|.-.+
T Consensus 196 ~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l 259 (700)
T KOG1156|consen 196 IEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGL 259 (700)
T ss_pred HHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHH
Confidence 4455566666555554321 122222 233345566667777777776666 3345555444443
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.4e-06 Score=71.90 Aligned_cols=231 Identities=16% Similarity=0.106 Sum_probs=162.6
Q ss_pred hhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC-------CCCCchHH-HHHHHHHhhh
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN-------LVRPNEAT-YVSVLSSCAG 75 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~p~~~~-~~~ll~~~~~ 75 (311)
.|..-|+.+.|.+-.+.+. +..+|..|.+.|.+.++.+-|.-.+-.|..... ...|+... -..++. ..
T Consensus 737 fyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA--ie 812 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA--IE 812 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH--HH
Confidence 5667799999988877663 567899999999999888877766666643210 01232211 111111 12
Q ss_pred hhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-hHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 76 LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
.|.+++|+.+|.+..+.+ .|=..|...|.+++|.++-+.-.+- -..||......+-..+|.+.|+++
T Consensus 813 ---LgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 ---LGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred ---HhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHH
Confidence 555999999999887643 3445677789999999987644222 235677777777778888888888
Q ss_pred HHHH----------HHcC---------CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 155 FDEM----------KEKG---------LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 155 ~~~m----------~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
|++. .... -..|...|.-....+-..|+++.|+.+|....+ |-+++...|-
T Consensus 881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCI 950 (1416)
T ss_pred HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEee
Confidence 8753 1111 122445666667777788999999999988863 5567788888
Q ss_pred cCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 216 AGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 216 ~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.|+.++|-++-++-| |......|.+.|-..|++.+|..+|.++..
T Consensus 951 qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 951 QGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999999988875 456667788889999999999998887763
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.3e-06 Score=68.50 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 113 KVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 113 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
+.+..++|+..++.....+..+...-.+.+-+.|++++|.++|+.+.+.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455555555554333333334444444444555555555555554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-06 Score=72.56 Aligned_cols=128 Identities=14% Similarity=0.146 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
....+|+..+...++++.|+.+|+++.+.++.....++..+...++..+|.+++.+..+.. +-+......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 3445667777788999999999999988888888889999999999999999999988762 336667777778899999
Q ss_pred cHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040965 182 LVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 233 (311)
+.+.|+.+.+++.+ ..|+ ..+|..|+.+|...|+++.|+-.++.++..|
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999985 4565 5699999999999999999999999885443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.5e-07 Score=74.63 Aligned_cols=124 Identities=15% Similarity=0.114 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
.....++..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +......-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 44556677777889999999999999865 355 4556788888889999999999888 3344 445555555668
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
...++++.|..+.+++.+..|++..+|..|+.+|...|++++|...++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.3e-05 Score=71.30 Aligned_cols=157 Identities=11% Similarity=0.062 Sum_probs=120.9
Q ss_pred CCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cc-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 040965 97 IVLSVFMGTALIDLYGKVGCLERAIRVFKSMV--IK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV 173 (311)
Q Consensus 97 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 173 (311)
.+.++..+..|.....+.|++++|+.+++.+. .| +......++..+.+.+++++|...+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 35567888889999999999999999999883 34 56677788899999999999999999988863 2256667777
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCCh
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAV 251 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~ 251 (311)
..++.+.|++++|..+|+++... .+-+..++..+..++...|+.++|...|++. ...|....|+..+. ++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HH
Confidence 88899999999999999999863 2234668888999999999999999999998 33455555554432 33
Q ss_pred hHHHHHHHHHH
Q 040965 252 DLCHEVGRRLL 262 (311)
Q Consensus 252 ~~a~~~~~~~~ 262 (311)
..-..+++++.
T Consensus 233 ~~~~~~~~~~~ 243 (694)
T PRK15179 233 NADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHcC
Confidence 34445555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-05 Score=63.08 Aligned_cols=119 Identities=13% Similarity=-0.020 Sum_probs=72.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCH
Q 040965 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 219 (311)
.+...|++++|+..++.+... .+-|..........+.+.|+.++|.+.++++... .|+ ....-.+..+|.+.|++
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCCh
Confidence 334556777777777776655 1224444455556667777777777777777643 444 33445556677777777
Q ss_pred HHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 220 SEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 220 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.+|..+++.. ..+-|+..|..|..+|...|+..++.....+...
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 7777776666 3334556666677777777766666655554443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-06 Score=72.76 Aligned_cols=212 Identities=13% Similarity=0.044 Sum_probs=151.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHH
Q 040965 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI 108 (311)
Q Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (311)
-..+...+...|-...|+.+|++... |.-++.+|..++ +..+|..+..+..++ +|+...|..++
T Consensus 401 q~~laell~slGitksAl~I~Erlem-----------w~~vi~CY~~lg---~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEM-----------WDPVILCYLLLG---QHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHH-----------HHHHHHHHHHhc---ccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 34667778888888899888888753 333444444433 377788887777763 67778888888
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
+......-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.. +....+|.....+..+.++++.|.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 7777777788888888765433 22222223344788888888888766542 3356788888888888888988888
Q ss_pred HHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 189 LFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 189 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.|..... ..|+ ...||.+-.+|.+.|+-.+|...+++. +. ..+...|...+....+.|.+++|.+.+.++..
T Consensus 541 aF~rcvt---L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVT---LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhh---cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888873 4554 578888889999999999998888887 22 23445566666667788889999888888875
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.4e-05 Score=60.18 Aligned_cols=188 Identities=12% Similarity=0.061 Sum_probs=131.4
Q ss_pred chhHHHHHHHHhhc---c-CCchH-HHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhH---HHHHHHHHcCCCHHHHHH
Q 040965 82 LYLGKQVHGYILRN---E-IVLSV-FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTW---NAMISSLASNSREKEALV 153 (311)
Q Consensus 82 ~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~ 153 (311)
.++..+++.+++.. | ..++. .+|..++-+....|+.+.|..+++++...-+.++ ..-..-+-..|++++|++
T Consensus 28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e 107 (289)
T KOG3060|consen 28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIE 107 (289)
T ss_pred HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHH
Confidence 55555555555432 2 34443 3344555666677888888888888743322222 222233445789999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
+|+.+.+.+ +-|..++..=+...-..|+.-.|++-+...++. +..|...|.-+...|...|++++|.-.++++ -+.
T Consensus 108 ~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 108 YYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 999998875 447778877777777888888999998888874 5778889999999999999999999999998 445
Q ss_pred CCc-chHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCchhHH
Q 040965 233 PDA-SVLGALLGACKIH---GAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 233 p~~-~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
|.. ..+..+...+.-. .+.+.+.+.|.+.+++.|.+...+
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHH
Confidence 644 4445565554333 367888999999999988554333
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-06 Score=66.62 Aligned_cols=197 Identities=13% Similarity=0.067 Sum_probs=145.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH-HHHHHc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAV-LTACAR 179 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~~~~~ 179 (311)
+++.+..+.+..++++|++++..-.++ +....+.+..+|-...++..|-+.|+++-.. .|...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 345555667788899999988766443 5567788888999999999999999998765 5655555432 456778
Q ss_pred cccHHHHHHHHHHhhccCCCccchhhHHHHH--HHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 040965 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVV--DLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 257 (311)
.+.+.+|+++...|.++ |+...-..-+ ......+++..+..++++.+...+..+.+...-...+.|+++.|.+-
T Consensus 91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHH
Confidence 89999999999988652 3322111111 22346788999999999985456666666555556789999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCcc
Q 040965 258 GRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAY 306 (311)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 306 (311)
|+.+.+.+.-.+..-..+.-+..+.|++..|.++..+++++|++.-|.+
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl 215 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL 215 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence 9999986654444444666677788999999999999999999877654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.67 E-value=7.2e-06 Score=70.85 Aligned_cols=187 Identities=12% Similarity=0.106 Sum_probs=126.7
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
...|.+|+.+++.+..+.. -..-|..+.+.|...|+++.|+++|-+.. .++-.|..|.+.|+|..|.++-.+.
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~ 817 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEEC 817 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHh
Confidence 4559999999998887643 23456677889999999999999997652 3556788999999999999987664
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchH
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVL 238 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 238 (311)
. |.......|.+-..-+-+.|++.+|.+++-.+- .|+. -|..|-+.|..+..+++.++-.-..-..|.
T Consensus 818 ~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 818 H--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred c--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 3 334455666666666778888888877664442 2332 356777888888888887776312233555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
..+..-+-..|+...|+.-|-++- -|..-+.+|...+.|++|.++-
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHH
Confidence 666666777777777776665543 2334445555555555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=7e-06 Score=67.49 Aligned_cols=127 Identities=17% Similarity=0.090 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~ 245 (311)
.-|..-+ .+...|+++.|+..++.++.. .+-|+.......+.+.+.++.++|.+.++++ ...|+. .....+..++
T Consensus 308 a~YG~A~-~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~al 384 (484)
T COG4783 308 AQYGRAL-QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQAL 384 (484)
T ss_pred HHHHHHH-HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 3344444 456789999999999999864 3445555667779999999999999999999 667875 5556677889
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.+.|++.+|..++++....+|+++..|..|.++|...|+..+|.....+...
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988887777776666544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.8e-06 Score=60.99 Aligned_cols=96 Identities=15% Similarity=0.159 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
.....+...+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++.+.+|++...+..++.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33445556666666677776666665 2233 345555555666666666676666666666666666666666666666
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...|++..+.+
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 98 LGEPESALKALDLAIEIC 115 (135)
T ss_pred cCCHHHHHHHHHHHHHhc
Confidence 677777766666666544
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-06 Score=61.31 Aligned_cols=96 Identities=9% Similarity=-0.063 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
...-.+...+...|++++|..+|+.+ .+.|.. .-|..|.-++...|++++|+..|..+..++|+++.++..++.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34445556666788888888888887 445543 5556666677778888888888888888888888888888888888
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|+.+.|.+.|+..+...
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 888888888888776653
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=9.6e-06 Score=61.09 Aligned_cols=183 Identities=11% Similarity=0.063 Sum_probs=135.3
Q ss_pred CCHHHHHHHHHHccc--------chH-hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 115 GCLERAIRVFKSMVI--------KDV-CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 115 g~~~~A~~~~~~~~~--------~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
.+.++..+++.++.. ++. ..|..+.-+....|+.+.|...++++... ++-+...-..-..-+-..|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 345555555555521 121 23445555667789999999999998876 33233333222333567899999
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
|.++++..++. -+.|..++-.-+...-..|+.-+|++-+.+. .+..|...|.-+...|...|++++|.-.+++++=
T Consensus 105 A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 105 AIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999999975 2456677777777777788888888777766 5667889999999999999999999999999999
Q ss_pred cCCCchhHHHHHHHHHhccc---hhHHHHHHHHHHHHccC
Q 040965 264 LQPKHCGRYVVLSNIHAGLE---RWNRATDLRKAMVEAGI 300 (311)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~ 300 (311)
..|.++..+..+.+.+.-.| +.+-|.++|.+..+.+.
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999877778888766444 56678888988877554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.7e-06 Score=57.92 Aligned_cols=115 Identities=12% Similarity=0.060 Sum_probs=53.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccch--hhHHHHHHHHHhcCCH
Q 040965 145 NSREKEALVMFDEMKEKGLRAN---EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM--EHYGCVVDLLGRAGLL 219 (311)
Q Consensus 145 ~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 219 (311)
.++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+... ...|+. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555655566555542 111 122223334455566666666666666544 212211 1223344555555666
Q ss_pred HHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 220 SEAKEFMRSMPFE-PDASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 220 ~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
++|+..++..... .....+......+...|+.++|...|+++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6666665554211 12222333334455555555555555543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.2e-05 Score=71.63 Aligned_cols=80 Identities=18% Similarity=0.074 Sum_probs=52.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchH---hhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV---CTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.++...+..-|+...+.. +.|...|..++.+|.++|++..|.++|.++..-++ ..-.-..-..+..|.+.+|+..+
T Consensus 575 a~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred ccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 455667777777776654 44778888899999999999999999977633222 11112223345567777777776
Q ss_pred HHHH
Q 040965 156 DEMK 159 (311)
Q Consensus 156 ~~m~ 159 (311)
....
T Consensus 654 ~~ii 657 (1238)
T KOG1127|consen 654 GLII 657 (1238)
T ss_pred HHHH
Confidence 6654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-05 Score=71.45 Aligned_cols=205 Identities=11% Similarity=0.008 Sum_probs=137.2
Q ss_pred hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHH
Q 040965 63 EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142 (311)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 142 (311)
...+..|+..+. ..+++++|.++.+...+.. +-....|-.+...+.+.++.+++.-+ .++...
T Consensus 31 ~~a~~~Li~~~~---~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~ 93 (906)
T PRK14720 31 FKELDDLIDAYK---SENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF 93 (906)
T ss_pred HHHHHHHHHHHH---hcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc
Confidence 344555555332 2556788887777655542 22334444444466666664444333 345555
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (311)
....++.-+..+...|... .-+...+..+..+|-+.|+.++|..+|+++++. . +-|+.+.|.+...|... ++++|
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D-~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKA-D-RDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHh-hHHHH
Confidence 5666665555555566553 234568888999999999999999999999975 2 44678899999999999 99999
Q ss_pred HHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh--------------------HHHHHHHHHhcc
Q 040965 223 KEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG--------------------RYVVLSNIHAGL 282 (311)
Q Consensus 223 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------------------~~~~l~~~~~~~ 282 (311)
.+++.+.- ..+...+++..+..+|.++.+..|++.. .+..+-..|...
T Consensus 169 ~~m~~KAV------------~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~ 236 (906)
T PRK14720 169 ITYLKKAI------------YRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKAL 236 (906)
T ss_pred HHHHHHHH------------HHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhh
Confidence 99988761 1245555666666666666666665432 333444667778
Q ss_pred chhHHHHHHHHHHHHccCC
Q 040965 283 ERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 283 g~~~~A~~~~~~m~~~~~~ 301 (311)
++|+++..+++.+.+....
T Consensus 237 ~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 237 EDWDEVIYILKKILEHDNK 255 (906)
T ss_pred hhhhHHHHHHHHHHhcCCc
Confidence 8999999999999886544
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00014 Score=65.36 Aligned_cols=237 Identities=12% Similarity=0.123 Sum_probs=130.7
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
.+..|+.+..+-.+.|...+|++-|-+. -|...|.-++..+.. .|.+++-.+.+....+..-+|.+.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~---~~~~edLv~yL~MaRkk~~E~~id-- 1169 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASR---TGKYEDLVKYLLMARKKVREPYID-- 1169 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHh---cCcHHHHHHHHHHHHHhhcCccch--
Confidence 3567889999988999999988877554 255667778876554 556888888887777765555544
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccchHhh--------------------------HHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCT--------------------------WNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------------~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
+.|+-+|++.+++.+.++++. -|+..- |..|...+...|+++.|.+.-++.
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 468888899888887776652 333333 333444444444444444333221
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-Ccc
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DAS 236 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 236 (311)
.+..||..+-.+|...+.+..|. |..- ++.....-..-|+..|...|-+++-+.+++.. |.+. ...
T Consensus 1247 ------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMg 1314 (1666)
T KOG0985|consen 1247 ------NSTKTWKEVCFACVDKEEFRLAQ-----ICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMG 1314 (1666)
T ss_pred ------cchhHHHHHHHHHhchhhhhHHH-----hcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHH
Confidence 13445555555555444443331 2111 12223344555666666666666666666655 4332 223
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
.|+-|.-.|++ =++++..+.++-... ..+ .-.+++++....-|.+..-++..-
T Consensus 1315 mfTELaiLYsk-ykp~km~EHl~LFws-RvN----ipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1315 MFTELAILYSK-YKPEKMMEHLKLFWS-RVN----IPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHHHHH-hcc----hHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444333333 233333333332221 111 114566666666666666555543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00022 Score=62.09 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=171.2
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH-------------------HHH----HHHHh
Q 040965 37 VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG-------------------KQV----HGYIL 93 (311)
Q Consensus 37 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a-------------------~~~----~~~~~ 93 (311)
...+..+.++.-+......+ ..-+..++..+...+..+...++.+++ ... +.++.
T Consensus 238 ~~~~~~~~~i~s~~~~l~~~--w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r 315 (799)
T KOG4162|consen 238 KKLSGPKEAIKSYRRALLRS--WSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLR 315 (799)
T ss_pred cCCCCchHHHHhhhHHhhcc--cccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH
Confidence 34567777888887777766 566666666666655544444444444 111 12222
Q ss_pred hccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-HH
Q 040965 94 RNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-IT 169 (311)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~ 169 (311)
...+.-+..+|..|.-+....|+++.+.+.|++...- ....|+.+...|...|.-..|..+++.-....-.|+. ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 2334556778888888888999999999999987543 5577888999999999999999999886554323533 33
Q ss_pred HHHHHHHH-HccccHHHHHHHHHHhhccCCC---ccchhhHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCC
Q 040965 170 FVAVLTAC-ARAQLVELGLELFHSMLGKFEV---VPIMEHYGCVVDLLGRA-----------GLLSEAKEFMRSM-PFEP 233 (311)
Q Consensus 170 ~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~-~~~p 233 (311)
+-..-..| .+.+..++++.+-.++.+..+- ...+..|-.+.-+|... ....++.+.+++. .+.|
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 33333333 4567888888887777653211 11233455555555421 2244566777776 3333
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 234 -DASVLGALLGACKIHGAVDLCHEVGRRLLELQ-PKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 234 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
|......+.--|+..++++.|.+..++..+++ .++...|..|+..+...+++.+|+.+.+...+
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 22232333334778899999999999999984 55777999999999999999999999886654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.9e-05 Score=56.38 Aligned_cols=125 Identities=10% Similarity=0.104 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchH--HHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSV--FMG 104 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 104 (311)
.|..++..+ ..++...+...++.+.+.. |+. ......+.........|++++|...|+.+......|+. ...
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~----~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY----PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 455555544 3666777777777776643 222 22222222112222356677777777777665533322 233
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc--hHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
..|..++...|++++|+..++....+ ....+......|.+.|++++|...|+.
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556666666666666666554322 334455556666666666666666654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.8e-06 Score=57.73 Aligned_cols=101 Identities=11% Similarity=0.071 Sum_probs=52.6
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHH
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLG 243 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 243 (311)
+..++..+.+.|++++|...|+.+.....-.+ ....+..+..++.+.|++++|.+.++.+ ...|+ ...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 34444455556666666666666554311111 1223444555666666666666666655 22232 233444445
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchh
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~ 270 (311)
.+...|+.++|...++++.+..|++..
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 556666666666666666666666543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.7e-05 Score=68.62 Aligned_cols=180 Identities=15% Similarity=0.021 Sum_probs=112.3
Q ss_pred HHHHHHHHHHcccch---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 117 LERAIRVFKSMVIKD---VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 117 ~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
...|...|-+..+.| ...|..|...|+..-+...|.+.|++..+.+ .-+..........|.+..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 555555555543333 3467777777777667777777777766543 225556667777777777777777774333
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
-++.....-...|....-.|.+.++...|..-|+.. ...| |...|..+..+|...|++..|.++|.++..++|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 222001111122333444566677777777777776 4445 55677777777777777777777777777777776544
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
-.......+..|++.+|...+..+..
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44555556677777777777766653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-06 Score=58.54 Aligned_cols=98 Identities=15% Similarity=0.040 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---hhHHHHH
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKH---CGRYVVL 275 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 275 (311)
.++..++..+.+.|++++|.+.|+.+ ...|+. ..+..+...+...|+++.|...++++....|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 35677888899999999999999998 334442 355667788999999999999999999987774 4578889
Q ss_pred HHHHhccchhHHHHHHHHHHHHccCC
Q 040965 276 SNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 276 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+.++.+.|++++|...++++.+....
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence 99999999999999999999987654
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=5.1e-05 Score=66.54 Aligned_cols=271 Identities=11% Similarity=0.060 Sum_probs=148.4
Q ss_pred hhhhhcCChHHHHHHHHHhc-------------cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENML-------------KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSV 69 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~l 69 (311)
.+|.+..+++-|.-.+..|. +++ ..=.-..-.....|..++|..+|.+.++.+ ..|-+
T Consensus 765 ~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~D--------LlNKl 835 (1416)
T KOG3617|consen 765 SMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRYD--------LLNKL 835 (1416)
T ss_pred HHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------HHHHH
Confidence 45566666666655555551 111 111112223356788888888888876532 22333
Q ss_pred HHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-------------------
Q 040965 70 LSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK------------------- 130 (311)
Q Consensus 70 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------- 130 (311)
.. ..|.+++|.++-+.--+..+ ..||......+-..++++.|++.|++...+
T Consensus 836 yQ------s~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv 906 (1416)
T KOG3617|consen 836 YQ------SQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV 906 (1416)
T ss_pred HH------hcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence 32 25667777776654333222 234555556666677777777777765111
Q ss_pred ----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----------C----------CCCcHHHHHHHHHHHHccccHHHH
Q 040965 131 ----DVCTWNAMISSLASNSREKEALVMFDEMKEK----------G----------LRANEITFVAVLTACARAQLVELG 186 (311)
Q Consensus 131 ----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----------~----------~~~~~~~~~~l~~~~~~~~~~~~a 186 (311)
|...|.=....+-..|+.+.|+.+|...+.. | -.-|......+.+.|-..|++.+|
T Consensus 907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~A 986 (1416)
T KOG3617|consen 907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKA 986 (1416)
T ss_pred HhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHH
Confidence 3333444444455567777777777665431 0 012455666777888888888888
Q ss_pred HHHHHHhhccCC-Cc--cchhhHHHHHHHHH--hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHH-
Q 040965 187 LELFHSMLGKFE-VV--PIMEHYGCVVDLLG--RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRR- 260 (311)
Q Consensus 187 ~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~- 260 (311)
..+|.+...-.+ +. .....-..|...+. ...+.-.|.++|++.|.. +..-+..|-+.|.+.+|+++-=+
T Consensus 987 v~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~t 1061 (1416)
T KOG3617|consen 987 VKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRT 1061 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhh
Confidence 888877642100 00 00001122222222 233444566677776522 22233456677777777665221
Q ss_pred -------HH--hcCCC-chhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 261 -------LL--ELQPK-HCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 261 -------~~--~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
++ .++|. ++.....-.+.+....++++|..++...+
T Consensus 1062 qQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar 1107 (1416)
T KOG3617|consen 1062 QQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAR 1107 (1416)
T ss_pred cccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 11 25555 56677778888888888998888776544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=55.91 Aligned_cols=93 Identities=22% Similarity=0.223 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
+..+...+...|++++|...+++. ...|+. ..+..+...+...|++++|...+++..+..|.+..++..++..+...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445566667777777777777776 333433 455556666777788888888888888777777667777788888888
Q ss_pred hhHHHHHHHHHHHHc
Q 040965 284 RWNRATDLRKAMVEA 298 (311)
Q Consensus 284 ~~~~A~~~~~~m~~~ 298 (311)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 888888888776653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-07 Score=47.41 Aligned_cols=33 Identities=39% Similarity=0.709 Sum_probs=27.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 166 (311)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888876
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00012 Score=60.98 Aligned_cols=237 Identities=13% Similarity=0.049 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCc--h----H
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL--S----V 101 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~ 101 (311)
-...+.++.-+..+++.|++.++...+ +. ...+|...+.+. .+ ..|.+.+.........+.|-.. + .
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~e----l~-~~it~~~n~aA~-~~-e~~~~~~c~~~c~~a~E~gre~rad~klIa 298 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALE----LA-TDITYLNNIAAV-YL-ERGKYAECIELCEKAVEVGRELRADYKLIA 298 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh----Hh-hhhHHHHHHHHH-HH-hccHHHHhhcchHHHHHHhHHHHHHHHHHH
Confidence 355677777788888888888888876 44 444444444321 11 1333444444444444433211 0 1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHcc
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-ITFVAVLTACARA 180 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~ 180 (311)
..+..+..+|.+.++++.|+..|.+...+... -....+....+++.+..+...-. .|.. .-...-...+++.
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKK 371 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhc
Confidence 11222444666777888888888775333111 11222334444555444443322 2322 1122225567778
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHH
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVG 258 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 258 (311)
|++..|+..|.++++. .+-|...|.....+|.+.|.+..|+.-.+.. ...|+ ...|..=..++....+++.|.+.|
T Consensus 372 gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred cCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888765 2445677888888888888888887766555 33333 234444444555666788888888
Q ss_pred HHHHhcCCCchhHHHHHHHHHh
Q 040965 259 RRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
++.++.+|++......+.++..
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHH
Confidence 8888888877654444444443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.0008 Score=56.56 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=85.7
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCC-CcchHHHHHHHHHhcCChhHHHHHH
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEP-DASVLGALLGACKIHGAVDLCHEVG 258 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 258 (311)
.+....++++++......|+. +|-.+++.-.+..-+..|..+|.+. +..+ ++..+.+++.-+ ..+|.+.|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHH
Confidence 455556666666655556655 6777777777888888888888888 2333 556666666644 467888888888
Q ss_pred HHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
+--++..++++..-...++.+...++-+.|..+|++....++.++.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 8888878887756667777788888888888888888877555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.9e-06 Score=52.86 Aligned_cols=66 Identities=17% Similarity=0.126 Sum_probs=59.5
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc-hhHHHHHHHHHHHHcc
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE-RWNRATDLRKAMVEAG 299 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~ 299 (311)
+...|..+...+...|++++|+..|+++++.+|+++.+|..++.+|.+.| ++++|.+.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 34677788888999999999999999999999999999999999999999 8999999999887653
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.7e-07 Score=46.19 Aligned_cols=33 Identities=39% Similarity=0.665 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
.+|+.++.+|++.|+++.|.++|++|.+.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777888888888888877777766
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00041 Score=61.47 Aligned_cols=224 Identities=16% Similarity=0.148 Sum_probs=150.1
Q ss_pred HhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 37 VRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 37 ~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
...+++.+|+.......++ .|+.. |..++.++.... .|+.++|..+++.....+.. |..|...+-.+|.+.|+
T Consensus 20 ld~~qfkkal~~~~kllkk----~Pn~~-~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK----HPNAL-YAKVLKALSLFR-LGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGK 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH----CCCcH-HHHHHHHHHHHH-hcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhh
Confidence 4568899999999999874 46654 445556655554 88899999888877665544 78888999999999999
Q ss_pred HHHHHHHHHHcccc--hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc----------cHH
Q 040965 117 LERAIRVFKSMVIK--DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ----------LVE 184 (311)
Q Consensus 117 ~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----------~~~ 184 (311)
.++|..+|+..... +......+..+|.+.+.+.+-.++--+|.+. .+-..+.|-.++......- -..
T Consensus 93 ~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999554 4444445566777877766555544444442 3335566666666554321 134
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHh-C-CCCCCc--chHHHHHHHHHhcCChhHHHHHHHH
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS-M-PFEPDA--SVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
-|.+.++.+.+..|---+..-...-...+...|++++|.+++.. . ...++. ..-+.-+..+...+++.+..++..+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 56777777777643111111122223345578899999999833 3 222332 3333455667889999999999999
Q ss_pred HHhcCCCc
Q 040965 261 LLELQPKH 268 (311)
Q Consensus 261 ~~~~~~~~ 268 (311)
+...++++
T Consensus 252 Ll~k~~Dd 259 (932)
T KOG2053|consen 252 LLEKGNDD 259 (932)
T ss_pred HHHhCCcc
Confidence 99988887
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=6e-07 Score=57.51 Aligned_cols=77 Identities=17% Similarity=0.256 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHhC-CCCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 217 GLLSEAKEFMRSM-PFEP---DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.+|.+......++.++.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 1122 222333345555556666666665555 4444444444444455566666666666655
Q ss_pred HH
Q 040965 293 KA 294 (311)
Q Consensus 293 ~~ 294 (311)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.5e-07 Score=46.56 Aligned_cols=34 Identities=26% Similarity=0.635 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE 63 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~ 63 (311)
+||++|.+|++.|++++|.++|++|.+.| +.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g--~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG--IEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCCC
Confidence 79999999999999999999999999998 88873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=52.15 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=51.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+...+...|++++|...|+++++..|.+...+..++.++...|++++|...|+++.+...
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 445678899999999999999999999988999999999999999999999999887654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=4e-06 Score=69.23 Aligned_cols=104 Identities=13% Similarity=0.033 Sum_probs=85.0
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGA 250 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 250 (311)
-...+...|+++.|+..|+++++. .+.+...|..+..+|...|++++|+..++++ .+.| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345677889999999999999864 2334667888889999999999999999998 5556 45677778888999999
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
+++|...|+++++.+|++......+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999988665554443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.1e-05 Score=59.59 Aligned_cols=94 Identities=20% Similarity=0.126 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
.+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++.+..|.+...+..++.++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444444555555555555555544 22221 134444555555566666666666666665555555555555555
Q ss_pred hccch--------------hHHHHHHHHHHHHc
Q 040965 280 AGLER--------------WNRATDLRKAMVEA 298 (311)
Q Consensus 280 ~~~g~--------------~~~A~~~~~~m~~~ 298 (311)
...|+ +++|.+++++....
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 55444 45555555555543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.2e-05 Score=60.82 Aligned_cols=264 Identities=13% Similarity=0.023 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHH-HHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY-VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA 106 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (311)
........+.+..++..|+..+...++. -|+...| ..-...+.. -|+++++.--.++-++.... .......
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~----~pd~a~yy~nRAa~~m~---~~~~~~a~~dar~~~r~kd~-~~k~~~r 122 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDM----CPDNASYYSNRAATLMM---LGRFEEALGDARQSVRLKDG-FSKGQLR 122 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHh----CccchhhhchhHHHHHH---HHhHhhcccchhhheecCCC-ccccccc
Confidence 3445556677778888888888888874 3444332 211111111 22244444444333332110 1122223
Q ss_pred HHHHHhhcCCHHHHHHHHHH---------------ccc-----chHhhHHHH-HHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 107 LIDLYGKVGCLERAIRVFKS---------------MVI-----KDVCTWNAM-ISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~---------------~~~-----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
.-.++...++..+|...++. ... |.-.+|..+ ..++.-.|++++|...--..++..- .
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~ 201 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-T 201 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-c
Confidence 33444444444444433332 111 112333333 2456678899988887766665431 1
Q ss_pred cHHHHHHHHH--HHHccccHHHHHHHHHHhhccCCCccchhhH-------------HHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 166 NEITFVAVLT--ACARAQLVELGLELFHSMLGKFEVVPIMEHY-------------GCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 166 ~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
+ .+..+++ ++.-.++.+.|...|++.++ ..|+...- ..=.+-..+.|++.+|.+.|.+.
T Consensus 202 n--~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal 276 (486)
T KOG0550|consen 202 N--AEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEAL 276 (486)
T ss_pred h--hHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhh
Confidence 2 2223333 34567889999999999884 45543221 11122345789999999999988
Q ss_pred CCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 230 PFEPD-----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 230 ~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
++.|+ ...|........+.|+..+|+.-.+++.+++|.-..+|..-+.++...++|++|.+-++...+..-.+..
T Consensus 277 ~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 277 NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Confidence 55554 4455555566789999999999999999999988888888899999999999999999988776544433
Q ss_pred c
Q 040965 305 A 305 (311)
Q Consensus 305 ~ 305 (311)
.
T Consensus 357 r 357 (486)
T KOG0550|consen 357 R 357 (486)
T ss_pred H
Confidence 3
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00018 Score=57.69 Aligned_cols=212 Identities=12% Similarity=0.118 Sum_probs=97.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL 107 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (311)
.|......|-..|++++|.+.|.+...-.....-....-..+..+...+ +..++++|... |...
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~---------------~~~A 100 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIEC---------------YEKA 100 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHH---------------HHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHH---------------HHHH
Confidence 5666677777778888887777776431100000011111111111111 12223333333 3333
Q ss_pred HHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHHcc
Q 040965 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASN-SREKEALVMFDEMKEK----GLRAN--EITFVAVLTACARA 180 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~l~~~~~~~ 180 (311)
+..|...|++..|-.++ ..+...|-.. |++++|++.|++..+. | .+. ...+..+...+.+.
T Consensus 101 ~~~y~~~G~~~~aA~~~-----------~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCL-----------KELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARL 168 (282)
T ss_dssp HHHHHHCT-HHHHHHHH-----------HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHH-----------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHh
Confidence 44455555555444433 3445566666 7777777777765432 2 221 24555666677777
Q ss_pred ccHHHHHHHHHHhhccCC----Cccchh-hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---c---chHHHHHHHHHhc
Q 040965 181 QLVELGLELFHSMLGKFE----VVPIME-HYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---A---SVLGALLGACKIH 248 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~----~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~---~~~~~l~~~~~~~ 248 (311)
|++++|.++|+++....- .+.+.. .+-..+-++...|++..|.+.+++. ...|. . .....|+.++ ..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~ 247 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EE 247 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-Hh
Confidence 777777777777654311 112221 2233344566677777777777765 33331 1 2334444444 44
Q ss_pred CChhHHHHHHHHHHhcCCCc
Q 040965 249 GAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~ 268 (311)
||.+.....+.+.-.+.+-+
T Consensus 248 ~D~e~f~~av~~~d~~~~ld 267 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISRLD 267 (282)
T ss_dssp T-CCCHHHHCHHHTTSS---
T ss_pred CCHHHHHHHHHHHcccCccH
Confidence 55444444444433333333
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.32 E-value=9.3e-07 Score=45.63 Aligned_cols=33 Identities=18% Similarity=0.397 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCC
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP 61 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p 61 (311)
.+|+.++.+|++.|+++.|.++|++|.+.| ++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~g--v~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQG--VKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC
Confidence 589999999999999999999999999988 877
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-05 Score=60.78 Aligned_cols=110 Identities=16% Similarity=0.082 Sum_probs=88.5
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHh-c--CChhHHHHHHHHHHhcCCCchhHHHH
Q 040965 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKI-H--GAVDLCHEVGRRLLELQPKHCGRYVV 274 (311)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~-~--g~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (311)
+-|...|..|...|...|+++.|..-|.+. .+.| |...+..+..++.. . ....++..+|+++++.+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447788999999999999999999999888 4444 44556666665432 2 24578889999999999999999999
Q ss_pred HHHHHhccchhHHHHHHHHHHHHccCCCCCccccc
Q 040965 275 LSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309 (311)
Q Consensus 275 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 309 (311)
|...+...|++.+|...|+.|.+.....+|..+.|
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 99999999999999999999999887777765554
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00059 Score=61.56 Aligned_cols=235 Identities=11% Similarity=0.137 Sum_probs=143.9
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
|+..-+....++...+-+.+-++++++..-......-+.-.-+.++-... .-+...+.+..+++-.-+ .|+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi----kad~trVm~YI~rLdnyD-a~~---- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI----KADRTRVMEYINRLDNYD-APD---- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh----hcChHHHHHHHHHhccCC-chh----
Confidence 55566667788888888888888888876433111111111122221111 111333333433333221 111
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcc-------------------------cchHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMV-------------------------IKDVCTWNAMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
+.......+-+++|..+|++.. -..+..|+.+..+-.+.|...+|++-|-+.
T Consensus 1054 --ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1054 --IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred --HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 1222333344445555544330 013567889999999999999998877432
Q ss_pred HcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHH
Q 040965 160 EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLG 239 (311)
Q Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 239 (311)
-|+..|.-++....+.|.+++-.+++..+.++ .-.|. .=+.|+-+|++.++..+-++++. -||.....
T Consensus 1131 -----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~--id~eLi~AyAkt~rl~elE~fi~----gpN~A~i~ 1198 (1666)
T KOG0985|consen 1131 -----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPY--IDSELIFAYAKTNRLTELEEFIA----GPNVANIQ 1198 (1666)
T ss_pred -----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCcc--chHHHHHHHHHhchHHHHHHHhc----CCCchhHH
Confidence 26678999999999999999999999888765 44555 34678899999999988776652 46777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHH
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (311)
.+..-|...|.++.|.-+|.... -|..|...+...|.++.|...
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~vS--------N~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNVS--------NFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665432 344555555555555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.7e-05 Score=51.64 Aligned_cols=92 Identities=16% Similarity=0.030 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (311)
+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...++..... .+.+..++..+...+.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 3344455555555555555555554432 122344444555555555555555555555432 1112234444445555
Q ss_pred hcCCHHHHHHHHHhC
Q 040965 215 RAGLLSEAKEFMRSM 229 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~ 229 (311)
..|++++|...+...
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 555555555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.25 E-value=1e-05 Score=51.71 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=41.7
Q ss_pred CcchhHHHHHHHHhhccCC-chHHHHHHHHHHHhhcCCHHHHHHHHHHc--ccchHhhHHHHHHHHHcCCCHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIV-LSVFMGTALIDLYGKVGCLERAIRVFKSM--VIKDVCTWNAMISSLASNSREKEALVMFD 156 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (311)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..++++. ...+....-.+..++.+.|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4466666666666665432 23344444666666666666666666552 11122333344566666666666666665
Q ss_pred H
Q 040965 157 E 157 (311)
Q Consensus 157 ~ 157 (311)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.8e-05 Score=57.14 Aligned_cols=110 Identities=14% Similarity=-0.070 Sum_probs=71.6
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCChhHHHHHHH
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLGACKIHGAVDLCHEVGR 259 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (311)
.+...+..+.+..+..-....+..++..+...|++++|...|++. ...|+ ..++..+...+...|++++|...++
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 333444444322122323455666777777778888888887777 33333 2356677777888888888888888
Q ss_pred HHHhcCCCchhHHHHHHHHHh-------ccchhHHHHHHHHH
Q 040965 260 RLLELQPKHCGRYVVLSNIHA-------GLERWNRATDLRKA 294 (311)
Q Consensus 260 ~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 294 (311)
++.+..|.....+..++..+. +.|++++|...+++
T Consensus 97 ~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 97 QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 888888877767777777776 77777755555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00019 Score=62.17 Aligned_cols=137 Identities=10% Similarity=0.018 Sum_probs=77.2
Q ss_pred hHhhHHHHHHHHHc--C---CCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHcc--------ccHHHHHHHHHHhhcc
Q 040965 131 DVCTWNAMISSLAS--N---SREKEALVMFDEMKEKGLRAN-EITFVAVLTACARA--------QLVELGLELFHSMLGK 196 (311)
Q Consensus 131 ~~~~~~~l~~~~~~--~---~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~ 196 (311)
+...|...+.+... . ++...|..+|++..+. .|+ ...+..+..++... .++..+.+...+....
T Consensus 336 ~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 336 QGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 55666666665332 2 2356777777777765 443 33343333322211 1233444444443322
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
.....+...|..+.-.+...|++++|...++++ ...|+...|..+...+...|+.++|...++++.+++|.++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 112233455666655555667777777777776 5556666666666777777777777777777777777765
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.7e-05 Score=50.47 Aligned_cols=80 Identities=19% Similarity=0.232 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHccc--------cHHHHHHHHHHhhccCCCccchhh
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGL-RANEITFVAVLTACARAQ--------LVELGLELFHSMLGKFEVVPIMEH 205 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~ 205 (311)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+.. ++-..+.+|+.|+.. +++|+..+
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666667999999999999999999 899999999999876532 466788899999987 89999999
Q ss_pred HHHHHHHHHh
Q 040965 206 YGCVVDLLGR 215 (311)
Q Consensus 206 ~~~l~~~~~~ 215 (311)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4e-06 Score=64.70 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=83.3
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCCh
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAV 251 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~ 251 (311)
.-+.+.+++.+|+..|.+++. +.| |.+-|..-..+|.+.|.++.|++-.+.. .+.|+. .+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 446788999999999999994 555 5566777889999999999999888877 666754 8899999999999999
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 252 DLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
++|.+.|+++++++|++......|-.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999999999997444444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.9e-05 Score=60.40 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=115.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHccc-------c--hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCCCc--HHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVI-------K--DVCTWNAMISSLASNSREKEALVMFDEMKE----KGLRAN--EIT 169 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~~ 169 (311)
....+.|...|++++|.+.|.+... + -...|.....+|.+. ++++|.+.+++..+ .| .|+ ...
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~ 116 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHH
Confidence 3445566666777777766665511 1 123444455555444 88888888877653 23 333 346
Q ss_pred HHHHHHHHHcc-ccHHHHHHHHHHhhccCCC--cc--chhhHHHHHHHHHhcCCHHHHHHHHHhCC---CCC-----Ccc
Q 040965 170 FVAVLTACARA-QLVELGLELFHSMLGKFEV--VP--IMEHYGCVVDLLGRAGLLSEAKEFMRSMP---FEP-----DAS 236 (311)
Q Consensus 170 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~p-----~~~ 236 (311)
+..+...|... |+++.|++.|++..+-+.. .+ -..++..++..+.+.|++++|.++|++.. ... +..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 67777788888 9999999999988754211 11 13456778889999999999999999871 111 111
Q ss_pred -hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-----hhHHHHHHHHHhcc--chhHHHHHHHHHH
Q 040965 237 -VLGALLGACKIHGAVDLCHEVGRRLLELQPKH-----CGRYVVLSNIHAGL--ERWNRATDLRKAM 295 (311)
Q Consensus 237 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~--g~~~~A~~~~~~m 295 (311)
.+...+-.+...||...|...+++.....|.- ......|+.++-.. ..+++|..-|+.+
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 12223335677899999999999999877642 23455667776542 3455555555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=6.7e-05 Score=55.33 Aligned_cols=128 Identities=16% Similarity=0.131 Sum_probs=81.9
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYG 207 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ 207 (311)
....+..+...+...|++++|...|++..+....++ ...+..+...+.+.|++++|...+++.++. .| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 345567777777788888888888888776533322 356777777788888888888888887753 33 344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
.+...+...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~ 164 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTT 164 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhc
Confidence 6666676666655544332221 123577888888888888776 44444444433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.8e-05 Score=60.70 Aligned_cols=143 Identities=14% Similarity=0.158 Sum_probs=102.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA-CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+..++. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888888999999999988543 2234445444444 33367788899999999875 4445567888888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 212 LLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
.+...++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+..+.+++.+..|.+. ....+.+-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHh
Confidence 889999999999999988 333333 4788888888889999999999999998887754 444444433
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.8e-05 Score=61.04 Aligned_cols=129 Identities=11% Similarity=-0.021 Sum_probs=75.5
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhh---ccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCCcc
Q 040965 169 TFVAVLTACARAQLVELGLELFHSML---GKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-------P-FEPDAS 236 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~ 236 (311)
.|..|...|.-.|+++.|+...+.-+ +.+|.+. ....+..|..++.-.|+++.|.+.|+.. + ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45555555556667777765544321 2223322 2345666777777777777777776654 2 123445
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQ------PKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+..+|...|.-..++++|+.++.+-+.+. .....++..|..+|...|..++|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56667777777777777777766554311 11234666777777777777777766655443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.8e-05 Score=62.91 Aligned_cols=103 Identities=10% Similarity=0.014 Sum_probs=84.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 216 (311)
....+...|++++|++.|+++.+.. +-+...|..+..+|...|++++|+..+++++.. .| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHh
Confidence 4566778899999999999999874 336778888889999999999999999999864 44 566788899999999
Q ss_pred CCHHHHHHHHHhC-CCCCCcchHHHHHHH
Q 040965 217 GLLSEAKEFMRSM-PFEPDASVLGALLGA 244 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 244 (311)
|++++|.+.|++. .+.|+......++..
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999998 667777666555533
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00015 Score=51.25 Aligned_cols=100 Identities=11% Similarity=0.018 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
...-.+...+...|++++|..+|+-+.. | +..-|-.|..++-..|++++|+..|......+ +-|...+-.+..++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344566667778888888888887733 2 55667778888888888888888888887765 236677777888888
Q ss_pred ccccHHHHHHHHHHhhccCCCccc
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPI 202 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~ 202 (311)
..|+.+.|.+.|+..+...+-.|.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhccChh
Confidence 888888888888888776544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00013 Score=58.30 Aligned_cols=143 Identities=13% Similarity=0.149 Sum_probs=104.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccch---HhhHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKD---VCTWNAMISS-LASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 177 (311)
.+|..+++...+.+.++.|..+|.++.+.. ...|-..+.. +...++.+.|.++|+...+. ...+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 467888999999999999999999996543 3334433333 33367888899999998876 556778888889999
Q ss_pred HccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGAC 245 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 245 (311)
.+.|+.+.|..+|++.+....... ....|...++.=.+.|+.+.+.++.+++ ...|+......++.-|
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSDRY 150 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHCCT
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHHHh
Confidence 999999999999999987532223 3358888888888899999999999888 4456655555555444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=98.14 E-value=4e-06 Score=42.14 Aligned_cols=29 Identities=45% Similarity=0.729 Sum_probs=20.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776665
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-06 Score=50.59 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=37.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
...|++++|...|+++....|++..++..++.+|.+.|++++|..+++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3566777777777777777777766777777777777777777777766665443
|
... |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.1e-05 Score=59.32 Aligned_cols=103 Identities=20% Similarity=0.172 Sum_probs=86.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 216 (311)
-..-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+..+. +.|. ..+|..|..+|...
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 3456778999999999999999873 33677778888899999999999999888884 4664 57899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCcchHHHHHHH
Q 040965 217 GLLSEAKEFMRSM-PFEPDASVLGALLGA 244 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~ 244 (311)
|++++|.+.|++. .+.|+-.+|..=+..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999998 889988887665544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=49.34 Aligned_cols=59 Identities=19% Similarity=0.129 Sum_probs=46.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
..|...+++++|.+++++++..+|+++..+...+.++.+.|++++|...++...+.+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~ 61 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD 61 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence 45677788888888888888888888778888888888888888888888888776553
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.9e-05 Score=62.04 Aligned_cols=118 Identities=10% Similarity=0.034 Sum_probs=83.4
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 040965 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171 (311)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 171 (311)
+.+......+++......+++.+..++-+.... -..|..++++.|...|..++++++++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555566777777777777777777666222 23455688888888888888888888877888888888888
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (311)
.|++.+.+.|++..|.++...|..+ +...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 8888888888888888888777766 4545555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0033 Score=49.05 Aligned_cols=53 Identities=8% Similarity=0.041 Sum_probs=25.5
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHH
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
..|.+.|.+..|..-++.+++++.-.| .......++.+|...|..++|.++..
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 335555555555555555554432222 22334444555555555555555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.9e-05 Score=47.63 Aligned_cols=60 Identities=22% Similarity=0.176 Sum_probs=38.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
+...+...|++++|.+.|+++ ...| +...+..+...+...|++++|...|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 345566777777777777776 4345 33555556666777777777777777777777765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.0026 Score=46.07 Aligned_cols=127 Identities=8% Similarity=-0.022 Sum_probs=75.3
Q ss_pred CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CcchHH
Q 040965 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP---DASVLG 239 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~ 239 (311)
.|+...-..|..+..+.|+..+|...|.+...- -+.-|....-.+.++....+++..|...++++ ..+| ++.+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 556666666667777777777777777776652 22345555566666666777777777777666 2222 223344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
.+.+.+...|++..|+..|+.+...-|... .-......+.+.|+..+|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHH
Confidence 455666777777777777777776555532 3333444455566555544433
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=1e-05 Score=40.56 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.6
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 578888888888888888888888888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00039 Score=60.23 Aligned_cols=141 Identities=7% Similarity=-0.014 Sum_probs=97.2
Q ss_pred cCCchHHHHHHHHHHHhhc-----CCHHHHHHHHHHcccch---HhhHHHHHHHHHcC--------CCHHHHHHHHHHHH
Q 040965 96 EIVLSVFMGTALIDLYGKV-----GCLERAIRVFKSMVIKD---VCTWNAMISSLASN--------SREKEALVMFDEMK 159 (311)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~--------~~~~~a~~~~~~m~ 159 (311)
..+.+...|...+.+.... ++...|.++|+++.+.| ...|..+..++... .+...+.+...+..
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456778888877765433 23779999999985543 33444444433221 12334444444433
Q ss_pred Hc-CCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcch
Q 040965 160 EK-GLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASV 237 (311)
Q Consensus 160 ~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 237 (311)
.. ....+...|..+.-.....|++++|...+++++. ..|+...|..+...+...|+.++|.+.+++. ...|...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~---L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID---LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 32 1233557777777677778999999999999985 4678889999999999999999999999887 67787776
Q ss_pred HH
Q 040965 238 LG 239 (311)
Q Consensus 238 ~~ 239 (311)
|.
T Consensus 489 ~~ 490 (517)
T PRK10153 489 LY 490 (517)
T ss_pred HH
Confidence 53
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=57.67 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=46.4
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHH
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLG 243 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~ 243 (311)
|...+....+.|++++|...|+.+++.+.-.+ ....+..+..+|...|++++|...|+.+ ...|+ ...+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555666555555554311110 0124445555555555555555555555 21222 122222333
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
.+...|+.+.|..+|+++++..|++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 44455555555555555555555543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0003 Score=51.68 Aligned_cols=62 Identities=16% Similarity=0.060 Sum_probs=30.6
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC--cHHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRA--NEITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
.|..++..+...|++++|...|++.......| ...++..+...+...|+.++|...++....
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444555555555555555554332111 123455555555555555555555555553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0027 Score=49.49 Aligned_cols=58 Identities=9% Similarity=0.018 Sum_probs=46.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 137 AMISSLASNSREKEALVMFDEMKEK--GLRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
.+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4556788999999999999999876 223345677788899999999999998877664
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00024 Score=46.77 Aligned_cols=84 Identities=20% Similarity=0.080 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC-CCchHHHHHHHHHhhhhhh-----cCcchhHHHHHHHHhhccCCchH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLV-RPNEATYVSVLSSCAGLVN-----EGGLYLGKQVHGYILRNEIVLSV 101 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~ 101 (311)
+-...|..+...+++.....+|+.+++.| + .|+..+|+.++.+.....- .+++-..+.+|+.|+..+++|+.
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~--i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~ 104 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNG--ITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPND 104 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcC--CCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcH
Confidence 44566777888899999999999999999 8 8999999999987654331 11345678889999999999999
Q ss_pred HHHHHHHHHHhh
Q 040965 102 FMGTALIDLYGK 113 (311)
Q Consensus 102 ~~~~~l~~~~~~ 113 (311)
.+|+.++..+.+
T Consensus 105 etYnivl~~Llk 116 (120)
T PF08579_consen 105 ETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHH
Confidence 999999887664
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00036 Score=58.21 Aligned_cols=100 Identities=9% Similarity=0.060 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHH
Q 040965 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLG 239 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~ 239 (311)
+.+......+++.+....+++.+..++-+........ .-..|..++|+.|.+.|..+++.++++.= |+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 3455555566666666666666666666554431111 11224456666666666666666666543 6666666666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.|+..+.+.|++..|.++...|..
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHH
Confidence 666666666666666666655553
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0082 Score=53.72 Aligned_cols=217 Identities=12% Similarity=0.098 Sum_probs=140.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHH-HHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTA-LIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
.+++.+|.+...++.+.. ||...... -.-...+.|+.++|..+++.... .|..|...+-.+|...++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 555888988888888763 33222111 12345688999999999987732 2888999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-CC---------HHHHHH
Q 040965 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA-GL---------LSEAKE 224 (311)
Q Consensus 155 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~---------~~~A~~ 224 (311)
|++..+. -|+......+..+|.+.+++.+-.+.--++-+. ++.+...+-++++.+... .. ..-|.+
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9998876 677888888888999988877655554444442 333444444555544432 11 223445
Q ss_pred HHHhCCCCC----CcchHHHHHHHHHhcCChhHHHHHHH-HHHhcCCC-chhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 225 FMRSMPFEP----DASVLGALLGACKIHGAVDLCHEVGR-RLLELQPK-HCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 225 ~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.++.+-.++ +..-...-...+...|++++|..++. ...+..++ +...-+.-+..+...++|.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555551122 11111112233567899999999984 33333333 4333445667777888888888888887777
Q ss_pred cCC
Q 040965 299 GIR 301 (311)
Q Consensus 299 ~~~ 301 (311)
|..
T Consensus 256 ~~D 258 (932)
T KOG2053|consen 256 GND 258 (932)
T ss_pred CCc
Confidence 654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.1e-05 Score=46.22 Aligned_cols=62 Identities=24% Similarity=0.464 Sum_probs=49.9
Q ss_pred hhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 040965 5 YVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVL 70 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll 70 (311)
+.+.|++++|+..|+.+.. | +...+..++.+|.+.|++++|.++++++.. ..|+...|..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~----~~~~~~~~~~l~ 65 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK----QDPDNPEYQQLL 65 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG----GGTTHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCHHHHHHHH
Confidence 3578999999999999843 3 677888899999999999999999999988 557766666555
|
... |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0086 Score=50.66 Aligned_cols=207 Identities=13% Similarity=0.132 Sum_probs=128.5
Q ss_pred HhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHH
Q 040965 42 FGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121 (311)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 121 (311)
.+++..+++.....- ..-+...|..+...--...+....+.....+++++......-.-+|..+++.-.+..-+..|.
T Consensus 309 t~e~~~~yEr~I~~l--~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 309 TDEAASIYERAIEGL--LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 355666666665432 223333333333211111112235566666766666543333456677788777888888888
Q ss_pred HHHHHcccc-----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 122 RVFKSMVIK-----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 122 ~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
.+|.++.+. ++..+.+++..||. ++..-|.++|+--.+. ..-+..--...+..+...|+-..+..+|++.+..
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 888887332 66777888887775 7888888888875443 1223334455666777888888888888888876
Q ss_pred CCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC----C--CCCCcchHHHHHHHHHhcCChhH
Q 040965 197 FEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM----P--FEPDASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 197 ~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~----~--~~p~~~~~~~l~~~~~~~g~~~~ 253 (311)
++.|+ ...|..+++-=..-|+...+.++-+++ + ..+....-..+++.|.-.+...-
T Consensus 465 -~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 465 -VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred -cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccc
Confidence 56654 467888888777888888888887665 2 22333444555566655555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00017 Score=53.54 Aligned_cols=97 Identities=18% Similarity=0.283 Sum_probs=74.6
Q ss_pred HHHHHc--ccchHhhHHHHHHHHH-----cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc--------------
Q 040965 122 RVFKSM--VIKDVCTWNAMISSLA-----SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA-------------- 180 (311)
Q Consensus 122 ~~~~~~--~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-------------- 180 (311)
..|+.. ..++..+|..++..|. +.|+.+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 4556677777777765 4588888888899999999999999999999887542
Q ss_pred --ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 181 --QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 181 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
.+-+-|++++++|... |+.||..++..|++.+.+.+..
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 2467888899999766 8999999999999888766543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0033 Score=51.56 Aligned_cols=164 Identities=14% Similarity=0.108 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc-------hHhhHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK-------DVCTWNAMISSLAS---NSREKEALVMFDEMKEKGLRANEITFV 171 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~ 171 (311)
.+.-.++-+|....+++..+++++.+... ....-...+-++.+ .|+.++|++++..+......++..+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 33445666789999999999999988544 22233345556667 899999999999966665677888888
Q ss_pred HHHHHHH----c-----cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC-HH---HHHHHH---HhC----C-
Q 040965 172 AVLTACA----R-----AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL-LS---EAKEFM---RSM----P- 230 (311)
Q Consensus 172 ~l~~~~~----~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~----~- 230 (311)
.+...|- . ....++|...|.+.-+ +.|+..+--.++..+...|. .+ +..++- ... +
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 7776652 1 2346788888876653 34554332223333333332 22 222222 111 1
Q ss_pred --CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 231 --FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 231 --~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
-..+-..+..++.++.-.|+.++|.+..+++.+..|+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 12344556778888889999999999999999887664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0028 Score=48.03 Aligned_cols=50 Identities=24% Similarity=0.500 Sum_probs=24.4
Q ss_pred hhhcCChHHHHHHHHHhccc------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 5 YVKNGDMDSAILLFENMLKR------DVVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
+.+.|++++|...|+.+... -..+.-.++.++.+.|+++.|...+++.++
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555221 122344455555555555555555555554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0012 Score=44.92 Aligned_cols=109 Identities=11% Similarity=0.019 Sum_probs=62.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCc--hHHHHHHHH
Q 040965 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL--SVFMGTALI 108 (311)
Q Consensus 31 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 108 (311)
.+..++-..|+.++|+.+|++..+.| ..... .-..+|..-..+...|++++|..++++.....+.+ +......+.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~~~~-~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAG--LSGAD-RRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 35566677788888888888887766 44332 22334433344445677777777777776642210 222223344
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSL 142 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~ 142 (311)
.++...|+.++|++.+-....++...|.--|..|
T Consensus 83 l~L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777776665555444444444444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00065 Score=48.57 Aligned_cols=70 Identities=24% Similarity=0.213 Sum_probs=54.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH-----HccCCCCCcc
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV-----EAGIRKIPAY 306 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~ 306 (311)
....++..+...|+++.|..+++++...+|-+...|..++.+|...|+..+|.++|+++. +.|+.|.+..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345566778889999999999999999999999999999999999999999999999875 3588776643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.011 Score=48.02 Aligned_cols=115 Identities=14% Similarity=0.064 Sum_probs=61.1
Q ss_pred cCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHH--HHHHHHHHhhcCC
Q 040965 39 NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM--GTALIDLYGKVGC 116 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~ 116 (311)
.|+-..|.++-.+..+. +..|......++.+-..+. .|+.+.|.+-|+.|... |.... ...|.-.-.+.|.
T Consensus 97 AGda~lARkmt~~~~~l---lssDqepLIhlLeAQaal~-eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Ga 169 (531)
T COG3898 97 AGDASLARKMTARASKL---LSSDQEPLIHLLEAQAALL-EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred cCchHHHHHHHHHHHhh---hhccchHHHHHHHHHHHHh-cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhccc
Confidence 45555555554444321 3445555555565555555 66777777777777652 22111 1122222334566
Q ss_pred HHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 117 LERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 117 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
.+.|...-+..-. | -.-.+...+...+..|+|+.|+++++.-+.
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 6666665555421 2 234555666667777777777777766543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.012 Score=47.72 Aligned_cols=106 Identities=10% Similarity=0.057 Sum_probs=74.3
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 248 (311)
+.+.-+.-|...|+...|.++-.+.. .|+..-|-..+.+++..+++++-.++... +-.+..|..++..|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 34444555667788777777655552 46777788888888888888887776543 33457788888888888
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHH
Q 040965 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (311)
|...+|..+..++ .+..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHH
Confidence 8888888877761 124556677778888777655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0011 Score=45.17 Aligned_cols=91 Identities=18% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHH
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLG 214 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 214 (311)
...++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556666777777777777776665443 23455566667777777777777777665421111 1112222334555
Q ss_pred hcCCHHHHHHHHHh
Q 040965 215 RAGLLSEAKEFMRS 228 (311)
Q Consensus 215 ~~g~~~~A~~~~~~ 228 (311)
..|+.++|.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 66777776666543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=6.2e-05 Score=46.01 Aligned_cols=63 Identities=22% Similarity=0.207 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-ChhHHHHHHHHHHhcCC
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHG-AVDLCHEVGRRLLELQP 266 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 266 (311)
.+|..+...+...|++++|+..|++. ...| +...+..+..++...| ++++|...++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45555566666666666666666665 3333 3345555555566666 56666666666666555
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0007 Score=48.21 Aligned_cols=86 Identities=5% Similarity=-0.140 Sum_probs=52.9
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~ 253 (311)
-+...|++++|..+|+-+.-- + .-+..-+..|..++...+++++|...|... -..-|+..+-....++...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-D-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-C-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 345677777777777776542 1 123334566666677777777777777665 112334444455566777777777
Q ss_pred HHHHHHHHHh
Q 040965 254 CHEVGRRLLE 263 (311)
Q Consensus 254 a~~~~~~~~~ 263 (311)
|+..|..+++
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777777665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00075 Score=53.08 Aligned_cols=98 Identities=12% Similarity=0.035 Sum_probs=75.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---hhHHHHH
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKH---CGRYVVL 275 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 275 (311)
..|...+..+.+.|++++|...|+.+ ...|+. ..+..+...|...|++++|...|+++.+..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34666555556778999999999888 445654 356667778889999999999999999877764 4466667
Q ss_pred HHHHhccchhHHHHHHHHHHHHccCC
Q 040965 276 SNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 276 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+.++...|++++|..+|+++.+....
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 88888899999999999988876543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0075 Score=43.83 Aligned_cols=133 Identities=10% Similarity=0.038 Sum_probs=86.6
Q ss_pred chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHH
Q 040965 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209 (311)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 209 (311)
|.+..--.|..++...|++.+|...|++....-..-|......+..+....++...|...++++.+...-.-++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34444455677777888888888888876654334466777777777888888888888888776542221233455566
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
...|...|.+..|+..|+.. ...|+...-......+.++|+.+++..-+..+.
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 77778888888888887776 445555444444445667776666655444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00062 Score=50.64 Aligned_cols=100 Identities=14% Similarity=0.157 Sum_probs=78.3
Q ss_pred HHHHHHHHh--ccccHHHHHHHHHHHHhc-----CCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh-----------
Q 040965 13 SAILLFENM--LKRDVVSWTSIINGFVRN-----GCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA----------- 74 (311)
Q Consensus 13 ~A~~~~~~~--~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~----------- 74 (311)
.-...|+.. ..++..+|..++..|.+. |..+=....+..|.+-| +.-|..+|+.|+..+=
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efg--v~kDL~~Y~~LLDvFPKg~fvp~n~fQ 109 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFG--VEKDLEVYKALLDVFPKGKFVPRNFFQ 109 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcC--CcccHHHHHHHHHhCCCCCcccccHHH
Confidence 345667766 566888999999998754 77777888889999999 9999999999998641
Q ss_pred ----hhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 75 ----GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 75 ----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
...+ +.+-+++++++|...|+-||..++..+++.|++.+.
T Consensus 110 ~~F~hyp~--Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFMHYPR--QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhccCcH--HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 266788899999999999999999999888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.015 Score=47.84 Aligned_cols=166 Identities=13% Similarity=0.055 Sum_probs=109.7
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHHc---cccHHHHHHHHHHhhccCCCccchhhH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKG---LRANEITFVAVLTACAR---AQLVELGLELFHSMLGKFEVVPIMEHY 206 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (311)
.+...++-+|....+++..+++++.+...- +.-....-....-++.+ .|+.++|++++..++.. ...+++.+|
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~ 220 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTL 220 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHH
Confidence 334455667899999999999999988641 11122222334445666 89999999999995554 456677788
Q ss_pred HHHHHHHHh---------cCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChh----HHHHHH---HHHH-hc----
Q 040965 207 GCVVDLLGR---------AGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVD----LCHEVG---RRLL-EL---- 264 (311)
Q Consensus 207 ~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~----~a~~~~---~~~~-~~---- 264 (311)
..+...|-. ....++|.+.|.+. .+.||..+--.++..+...|... +..++- ..+. +.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 888876642 23578899999888 66777655444444444444322 222222 1111 11
Q ss_pred CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 265 QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.-.+...+.+++.++.-.|+.++|.+..++|....
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 12244567789999999999999999999998763
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.016 Score=43.96 Aligned_cols=186 Identities=9% Similarity=0.033 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (311)
...+-.....+...|++.+|.+.|+.+....+.-+--....-.+.. +.. +.|+++.|...+++.++.-+.....-+.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~--a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A 81 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAY--AYY-KQGDYEEAIAAYERFIKLYPNSPKADYA 81 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHH--HHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH--HHH-HcCCHHHHHHHHHHHHHHCCCCcchhhH
Confidence 3344455666778899999999999888753211111111112222 222 3677888888888887764322222222
Q ss_pred HHHHHHhhcCCHHHHHHHHHHcccc-------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVIK-------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
..+.+.+......... ...+ -...+..++.-|=.+.-..+|...+..+.+. =...-..+...|.
T Consensus 82 ~Y~~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 2222221111111110 0011 1223445555555566666666666555432 1111223556688
Q ss_pred ccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAK 223 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 223 (311)
+.|.+..|..-++.+++++.-.+. ......++.+|.+.|..+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888888888888876332222 244566777888888777543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.031 Score=46.48 Aligned_cols=114 Identities=17% Similarity=0.211 Sum_probs=73.6
Q ss_pred cccc-HHHHHHHHHHhhccCCCcc-chhhHHHHH----HHHHhc---CCHHH---HHHHHHhCCCCC----CcchHHHHH
Q 040965 179 RAQL-VELGLELFHSMLGKFEVVP-IMEHYGCVV----DLLGRA---GLLSE---AKEFMRSMPFEP----DASVLGALL 242 (311)
Q Consensus 179 ~~~~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~~---g~~~~---A~~~~~~~~~~p----~~~~~~~l~ 242 (311)
+.|. -++|+++++.+++ +.| |...-|.+. ..|... ..+.. -...+++.|+.| +...-|.|.
T Consensus 391 ~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred hcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 3444 6778888887764 232 222222211 222211 11222 223344446665 334556666
Q ss_pred HH--HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 243 GA--CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 243 ~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
.+ +..+|++.++.-.-.-+.+..| ++.+|..++-+.....++++|..++..+.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 65 5689999999988888888999 66799999999999999999999998753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=7.8e-05 Score=38.11 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhccchhHHHH
Q 040965 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289 (311)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 289 (311)
+|+++++.+|+++.+|..++..|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368899999999999999999999999999986
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.011 Score=50.86 Aligned_cols=162 Identities=14% Similarity=0.041 Sum_probs=105.2
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-----HHHHHHHHHhhhhh-hcCcchhHHHHHHHHhhccCCchHH
Q 040965 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-----ATYVSVLSSCAGLV-NEGGLYLGKQVHGYILRNEIVLSVF 102 (311)
Q Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-----~~~~~ll~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (311)
...++....-.|+-+.+++.+.+..+.+. +.-.. ..|+..+..+.... .....+.+.++++.+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~-i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSEN-IRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 34455666678899999999988876431 22211 22334443333330 145578889999988876 45554
Q ss_pred HHHH-HHHHHhhcCCHHHHHHHHHHcccc-------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 103 MGTA-LIDLYGKVGCLERAIRVFKSMVIK-------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 103 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
.|.. -.+.+...|++++|++.|++.... ....+--+...+.-..+|++|.+.|..+.+.. ..+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 4443 356777889999999999976432 33445556667788899999999999988753 33555555554
Q ss_pred HH-HHccccH-------HHHHHHHHHhh
Q 040965 175 TA-CARAQLV-------ELGLELFHSML 194 (311)
Q Consensus 175 ~~-~~~~~~~-------~~a~~~~~~~~ 194 (311)
.+ +...|+. ++|..+|.++.
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 43 4456666 78888887764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.04 Score=45.87 Aligned_cols=255 Identities=9% Similarity=0.072 Sum_probs=150.2
Q ss_pred hhhcCChHHHHHHHHHhccc---c------HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh
Q 040965 5 YVKNGDMDSAILLFENMLKR---D------VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~~---~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 75 (311)
+-+++++++|+++|.++.+. + ...-+.++++|.. ++.+.....+.+..+ ..| ...|..+..+...
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~----~~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQ----QFG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHH----hcC-CchHHHHHHHHHH
Confidence 45789999999999999432 2 2234567777754 456666666666665 345 4456666666555
Q ss_pred hhhcCcchhHHHHHHHHhhc--cCCc------------hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--------hHh
Q 040965 76 LVNEGGLYLGKQVHGYILRN--EIVL------------SVFMGTALIDLYGKVGCLERAIRVFKSMVIK--------DVC 133 (311)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~--~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~ 133 (311)
+. ++.+.+|.+.+..-..+ +..| +...-+..++++...|++.++..+++++.+. +..
T Consensus 90 Y~-~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 90 YK-QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HH-hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 55 77799998888766554 2221 2222356678899999999999999988433 677
Q ss_pred hHHHHHHHHHcC---------------CCHHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHHcc--ccHHHHHHHH
Q 040965 134 TWNAMISSLASN---------------SREKEALVMFDEMKEK------GLRANEITFVAVLTACARA--QLVELGLELF 190 (311)
Q Consensus 134 ~~~~l~~~~~~~---------------~~~~~a~~~~~~m~~~------~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~ 190 (311)
+|+.++-.+.++ ..++.+.-+.++|... .+.|-...+..++....-. .+..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 787754444321 1133444444444322 2344444444554443321 1222223333
Q ss_pred HHhhccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHhC---CCC----CCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 191 HSMLGKFEVVPIME-HYGCVVDLLGRAGLLSEAKEFMRSM---PFE----PDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 191 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~---~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
+.-.+. -+.|+-. ....|+..+.. +.+++..+-+.+ .+. .-..++..++....+.++...|.+.+.-+.
T Consensus 249 ~~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~ 325 (549)
T PF07079_consen 249 ENWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLK 325 (549)
T ss_pred HHHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333222 4555522 22333333333 566666665554 111 123567777788889999999999998888
Q ss_pred hcCCCch
Q 040965 263 ELQPKHC 269 (311)
Q Consensus 263 ~~~~~~~ 269 (311)
-++|...
T Consensus 326 ~ldp~~s 332 (549)
T PF07079_consen 326 ILDPRIS 332 (549)
T ss_pred hcCCcch
Confidence 8888753
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00039 Score=43.60 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=44.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh----cCCC---chhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLE----LQPK---HCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.+++.+...|...|++++|+..|+++++ .+++ ...++..++.++...|++++|.+++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566677778888888888888888775 2222 234677888888888888888888887654
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0031 Score=51.36 Aligned_cols=94 Identities=14% Similarity=0.092 Sum_probs=76.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
++..|.-+|.+.+++.+|++...+. .. ++|+...-.=..++...|+++.|+..|+++++..|.+..+-..|+.+-.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 5677888999999999999998887 33 456777777778899999999999999999999999987777887777666
Q ss_pred chhHH-HHHHHHHHHHc
Q 040965 283 ERWNR-ATDLRKAMVEA 298 (311)
Q Consensus 283 g~~~~-A~~~~~~m~~~ 298 (311)
....+ ..++|..|...
T Consensus 339 ~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 55554 47888888753
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00071 Score=41.75 Aligned_cols=62 Identities=19% Similarity=0.139 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHH
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
..|.+.+++++|.++++.+ ...|+ ...+......+...|++++|...++++.+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888888888888887 44554 45555666778888888888888888888888776443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.007 Score=46.47 Aligned_cols=138 Identities=9% Similarity=-0.012 Sum_probs=98.5
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
-..+-++++..+.-.|.+.-....+.+..+...+-+......+...-.+.|+.+.|..+|+++.+. .-+.+.-+.+.++
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHH
Confidence 345566788888888999999999999988765667888888999999999999999999987654 3333333333333
Q ss_pred -----HHHHhcCCHHHHHHHHHhCC-CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 211 -----DLLGRAGLLSEAKEFMRSMP-FEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 211 -----~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
..|.-.+++..|...+.+.. ..| |+...|.-.-+..-.|+...|.+.++.+....|...
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 34556778888888888872 222 333333322233347889999999999998888753
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00033 Score=38.34 Aligned_cols=42 Identities=26% Similarity=0.279 Sum_probs=35.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (311)
.++..+...|...|++++|.++|+++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778888999999999999999999999999888877654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.04 Score=45.01 Aligned_cols=273 Identities=14% Similarity=0.144 Sum_probs=174.2
Q ss_pred cCChHHHHHHHHHh---ccccHHHHHHHHHH--HHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcc
Q 040965 8 NGDMDSAILLFENM---LKRDVVSWTSIING--FVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 8 ~g~~~~A~~~~~~~---~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 82 (311)
.|+-..|.++-.+. +..|-...-.++.+ -.-.|+++.|.+-|+-|.. .|..... -|=..|......|..
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRll-GLRgLyleAqr~Gar 170 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLL-GLRGLYLEAQRLGAR 170 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHH-hHHHHHHHHHhcccH
Confidence 46666666666554 23354444445544 3457999999999999975 2332221 111222333446778
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc-----ccchHh--hHHHHHHHH---HcCCCHHHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM-----VIKDVC--TWNAMISSL---ASNSREKEAL 152 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~--~~~~l~~~~---~~~~~~~~a~ 152 (311)
+.|..+-+..-..-.. -...+...+...|..|+|+.|+++++.- ++++.. .-..|+.+- .-.-+...|.
T Consensus 171 eaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar 249 (531)
T COG3898 171 EAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASAR 249 (531)
T ss_pred HHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 8888887777665322 3567788899999999999999999865 333322 111222221 1234566676
Q ss_pred HHHHHHHHcCCCCcHHH-HHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--
Q 040965 153 VMFDEMKEKGLRANEIT-FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-- 229 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-- 229 (311)
..-.+..+ ..||..- -..-..++.+.|+..++-.+++.+=+. .|.+..+...+ +.+.|+. +..-+++.
T Consensus 250 ~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~ 320 (531)
T COG3898 250 DDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDT--ALDRLKRAKK 320 (531)
T ss_pred HHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCc--HHHHHHHHHH
Confidence 66655544 3555432 233456789999999999999999765 44444443322 3355543 33222222
Q ss_pred --CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc-cchhHHHHHHHHHHHH
Q 040965 230 --PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG-LERWNRATDLRKAMVE 297 (311)
Q Consensus 230 --~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~ 297 (311)
..+| +..+-..+..+-...|++..|..--+.+.+..|... .|..|.+.-.. .|+-.++...+.+-.+
T Consensus 321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 2344 446667777888899999999998888888888875 88888887664 4999999888877654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0075 Score=47.31 Aligned_cols=111 Identities=15% Similarity=0.069 Sum_probs=81.4
Q ss_pred CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHhC-CCCCCc-chH
Q 040965 164 RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA---GLLSEAKEFMRSM-PFEPDA-SVL 238 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~p~~-~~~ 238 (311)
+-|...|..|..+|...|+.+.|..-|....+-.| +++..+..+..++... ....++.++|+++ ...|+. .+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 44788999999999999999999999999886533 3444566666655432 2456788899988 555644 455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (311)
..|...+...|++.+|...|+.|.+..|.+. .+..++.
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~ie 268 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLIE 268 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHHH
Confidence 5555678899999999999999999887764 4555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.021 Score=46.79 Aligned_cols=261 Identities=11% Similarity=0.033 Sum_probs=150.5
Q ss_pred hhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC-----CCCc--hHHHHHHHHHh
Q 040965 4 GYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL-----VRPN--EATYVSVLSSC 73 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~p~--~~~~~~ll~~~ 73 (311)
.+.+..++..|+..+...++ | ++.-|..-+..+...|++++|.--.+.-.+..++ .+|+ ......++.++
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~ 137 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE 137 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence 45667778888888877643 3 5556667777788888888888777666553211 1111 11222333333
Q ss_pred hhhhhcCc---chhHHHHHHHHhhccC-CchHHHHHHH-HHHHhhcCCHHHHHHHHHHcccchH-hhHHHHHH--HHHcC
Q 040965 74 AGLVNEGG---LYLGKQVHGYILRNEI-VLSVFMGTAL-IDLYGKVGCLERAIRVFKSMVIKDV-CTWNAMIS--SLASN 145 (311)
Q Consensus 74 ~~~~~~~~---~~~a~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l~~--~~~~~ 145 (311)
..+. ..+ ...++..++....... +|....+-.+ ..++.-.|+.++|.+.-..+.+.|. ..+...++ ++--.
T Consensus 138 ~~~~-~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 138 EKLK-SKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHhh-hhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 2222 111 1112222222222221 2333344333 4567778899988888777655543 23333443 33456
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHH-------------HHHHHHHHccccHHHHHHHHHHhhccC--CCccchhhHHHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITF-------------VAVLTACARAQLVELGLELFHSMLGKF--EVVPIMEHYGCVV 210 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~ 210 (311)
++.+.|...|++.+.. .|+...- ..=.+-..+.|++..|.+.|.+.+... +..|+...|....
T Consensus 217 ~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 217 DNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 7888888888887765 3443221 111233467889999999998887421 2233455566666
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
....+.|+..+|+.--+.. .+.|.. ..+..-..++...+++++|.+-++++.+...+
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777889999998887776 433321 22333334566778888888888888764433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0078 Score=42.94 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=48.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc----cCCCccchhhH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG----KFEVVPIMEHY 206 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 206 (311)
.+...++..+...|++++|..+.+.+.... +.+...|..++.+|...|+...|.+.|+.+.+ ..|+.|+..+-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 345566777778888888888888888763 44788888888888888888888888877643 24677776543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00069 Score=56.24 Aligned_cols=98 Identities=11% Similarity=0.006 Sum_probs=72.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS----VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS 276 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (311)
+...++.+..+|...|++++|+..|++. .+.|+.. +|..+..+|...|+.++|...++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4567888999999999999999999996 7778764 4888889999999999999999999987322 232211
Q ss_pred H--HHhccchhHHHHHHHHHHHHccCCC
Q 040965 277 N--IHAGLERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 277 ~--~~~~~g~~~~A~~~~~~m~~~~~~~ 302 (311)
. .+....+..+..++++.+.+.|...
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~~ 178 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGEDI 178 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCcc
Confidence 1 1122334456777888888777643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.033 Score=42.96 Aligned_cols=136 Identities=10% Similarity=0.015 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH-----H
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL-----T 175 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~-----~ 175 (311)
+.++.++...|.+.-....+.+.++. ++.....|.+.-.+.||.+.|...|++..+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34455555556666666666665433 44555566666666777777777777665443233333333322 2
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALL 242 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 242 (311)
.|.-++++..|...+.++... .+.|+...|.-.-+..-.|+...|.+.++.| ...|...+.++++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~--D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~ 326 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRM--DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVL 326 (366)
T ss_pred heecccchHHHHHHHhhcccc--CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHH
Confidence 344556666666666666653 1223333444444444566777777777777 5556665555444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.074 Score=47.07 Aligned_cols=110 Identities=15% Similarity=0.078 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHh
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKI 247 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 247 (311)
.+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-+++-+... .+.-|.-++..|.+
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~ 756 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLK 756 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHh
Confidence 344444556677888888888766664 5677778778888889999988877777664 25677788899999
Q ss_pred cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 248 HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.|+.++|.+++.+.... .-...+|.+.|++.+|.++--
T Consensus 757 ~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 757 QGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence 99999998887764322 156677888888888776543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=41.48 Aligned_cols=25 Identities=16% Similarity=0.361 Sum_probs=11.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
+++.+...|...|++++|+..|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444445555555555555544443
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0027 Score=43.75 Aligned_cols=79 Identities=10% Similarity=0.085 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHH---------------HcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccC
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMK---------------EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF 197 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~---------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 197 (311)
.++.+++.++++.|+.+....+++..- .....|+..+..+++.+|+..|++..|.++++...+.+
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555555554321 11234556666666666666666666666666666666
Q ss_pred CCccchhhHHHHHH
Q 040965 198 EVVPIMEHYGCVVD 211 (311)
Q Consensus 198 ~~~~~~~~~~~l~~ 211 (311)
+++.+..+|..|+.
T Consensus 83 ~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 83 PIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCCHHHHHHHHH
Confidence 65555555655554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.028 Score=48.87 Aligned_cols=233 Identities=14% Similarity=0.121 Sum_probs=139.3
Q ss_pred hhhhcCChHHHHHHHHHh-----------ccccHHHHHHHHHHHHhcCCH--hHHHHHHHHhhcCCCCCCCchHHHHHHH
Q 040965 4 GYVKNGDMDSAILLFENM-----------LKRDVVSWTSIINGFVRNGCF--GEAICVFKNMMGNVNLVRPNEATYVSVL 70 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~p~~~~~~~ll 70 (311)
-|...|.+++|..+---- ...+...++..=++|.+..+. -+.+.-++++.++| -.|+........
T Consensus 565 q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg--e~P~~iLlA~~~ 642 (1081)
T KOG1538|consen 565 QYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRG--ETPNDLLLADVF 642 (1081)
T ss_pred hhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC--CCchHHHHHHHH
Confidence 355667777775442111 011333455555666665543 34555566777777 678766544433
Q ss_pred HHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc---------cc-----hHhhHH
Q 040965 71 SSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV---------IK-----DVCTWN 136 (311)
Q Consensus 71 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~-----~~~~~~ 136 (311)
. - .|.+.+|.++|.+- |.+ |..+..|-....++.|.++..... ++ +..-=.
T Consensus 643 A---y---~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk 707 (1081)
T KOG1538|consen 643 A---Y---QGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK 707 (1081)
T ss_pred H---h---hhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH
Confidence 2 1 55588888887543 332 334555555555666665554321 11 111112
Q ss_pred HHHHHHHcCCCHHHHHHHHHH------HHHcCCCC---cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHH
Q 040965 137 AMISSLASNSREKEALVMFDE------MKEKGLRA---NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~------m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (311)
+....+...|+.++|..+.-+ +.+-+.+. +..+...+...+-+...+..|-++|.+|-+ ..
T Consensus 708 aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~k 777 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LK 777 (1081)
T ss_pred HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HH
Confidence 345666778888888776432 22222222 344555666666677788888888888842 34
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCcch-HHH----------HHHHHHhcCChhHHHHHHHHHHh
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM-PFEPDASV-LGA----------LLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~----------l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.+++.+...+++++|..+-++. ...||+.. |.. --.+|.+.|+-.+|.++++++..
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 5678888999999999999988 55666532 222 22567888999999999988864
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00085 Score=54.60 Aligned_cols=222 Identities=15% Similarity=0.089 Sum_probs=120.9
Q ss_pred hhhhcCcchhHHHHHHHHhhccCCc---hHHHHHHHHHHHhhcCCHHHHHHHHHH-------cccc--hHhhHHHHHHHH
Q 040965 75 GLVNEGGLYLGKQVHGYILRNEIVL---SVFMGTALIDLYGKVGCLERAIRVFKS-------MVIK--DVCTWNAMISSL 142 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~--~~~~~~~l~~~~ 142 (311)
++++.|+......+|+..++.|... =..+|..|.++|.-.+++++|++.-.. +-.. ..-+-..|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 3444556666666666666655321 123445555666666666666654321 0000 111222334444
Q ss_pred HcCCCHHHHHHHHHHH----HHcCCCC-cHHHHHHHHHHHHccc--------------------cHHHHHHHHHHhhc--
Q 040965 143 ASNSREKEALVMFDEM----KEKGLRA-NEITFVAVLTACARAQ--------------------LVELGLELFHSMLG-- 195 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m----~~~~~~~-~~~~~~~l~~~~~~~~--------------------~~~~a~~~~~~~~~-- 195 (311)
-..|.+++|.-...+- .+.|-.. ....+..+...|...| .++.|.++|.+-++
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555432221 1222111 1233444455554433 23445555543221
Q ss_pred -cCCCc-cchhhHHHHHHHHHhcCCHHHHHHHHHh-------CCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh--
Q 040965 196 -KFEVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRS-------MPFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLE-- 263 (311)
Q Consensus 196 -~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 263 (311)
+.|.. .--..|..|...|.-.|+++.|+..-+. .|.+. ....+..+..++.-.|+++.|.+.|+....
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11111 1224567777777778999999866432 23222 335677788889999999999999988763
Q ss_pred --cCCC--chhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 264 --LQPK--HCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 264 --~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
++-. ....-..|...|.-...+++|+.++.+-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3322 33455688899998899999999887643
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.059 Score=43.17 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=31.3
Q ss_pred hhhcCChHHHHHHHHHhcc------cc------HHHHHHHHHHHHhcC-CHhHHHHHHHHhhc
Q 040965 5 YVKNGDMDSAILLFENMLK------RD------VVSWTSIINGFVRNG-CFGEAICVFKNMMG 54 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~------~~------~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 54 (311)
..++|+++.|..++.++.. |+ ...|+ +.....+.+ +++.|...+++..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn-~G~~l~~~~~~~~~a~~wL~~a~~ 64 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYN-IGKSLLSKKDKYEEAVKWLQRAYD 64 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHH-HHHHHHHcCCChHHHHHHHHHHHH
Confidence 3578999999999998832 21 12344 344445555 88877776666543
|
It is also involved in sporulation []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.05 Score=41.91 Aligned_cols=55 Identities=16% Similarity=0.013 Sum_probs=39.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCch---hHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 242 LGACKIHGAVDLCHEVGRRLLELQPKHC---GRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
.+-|.+.|.+..|..-++++++.-|+.+ ..+..+..+|...|-.++|.+.-+-+.
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3557788888888888888887665543 355567778888888888877765543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.11 Score=45.35 Aligned_cols=205 Identities=10% Similarity=0.026 Sum_probs=122.3
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch--HhhHH-----HHHHHHHcCCCHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD--VCTWN-----AMISSLASNSREKEALVM 154 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~-----~l~~~~~~~~~~~~a~~~ 154 (311)
+-+...-++++.++|..|+... +...++-.|++.+|-++|.+--..+ ...|+ -..+-+...|..++-..+
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHH
Confidence 3344445567777887787643 4566677788888888887663221 12222 134455666666665555
Q ss_pred HHHHHHc--CCCCcHHHHHHHHHHHHccccHHHHHHHHHH------hhcc--CCCccchhhHHHHHHHHHhcCCHHHHHH
Q 040965 155 FDEMKEK--GLRANEITFVAVLTACARAQLVELGLELFHS------MLGK--FEVVPIMEHYGCVVDLLGRAGLLSEAKE 224 (311)
Q Consensus 155 ~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (311)
.++=.+. ++.-.. .....+...|+.++|..+.-+ +.+. .-...+..+...+..-+.+...+.-|.+
T Consensus 693 ~RKRA~WAr~~kePk----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAae 768 (1081)
T KOG1538|consen 693 IRKRADWARNIKEPK----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAE 768 (1081)
T ss_pred HHHHHHHhhhcCCcH----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHH
Confidence 5432111 111111 222334455665555544211 1100 0012244556666666667788999999
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH----------HHHHHHHHhccchhHHHHHHHHH
Q 040965 225 FMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR----------YVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 225 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
+|.+|+.. .+++......+++++|..+-++.-+..|+-... |...-.+|.+.|+-.+|..++++
T Consensus 769 IF~k~gD~------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 769 IFLKMGDL------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HHHHhccH------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999632 456777889999999999988877765553222 33444578899999999999988
Q ss_pred HHHcc
Q 040965 295 MVEAG 299 (311)
Q Consensus 295 m~~~~ 299 (311)
+....
T Consensus 843 Ltnna 847 (1081)
T KOG1538|consen 843 LTNNA 847 (1081)
T ss_pred hhhhh
Confidence 86543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0089 Score=46.29 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=49.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---chhHHHHHHH
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPK---HCGRYVVLSN 277 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~ 277 (311)
|+.-++.| +.|++..|...|... .-.|+. ..+--|..++...|+++.|..+|..+.+..|+ -++++..|+.
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44444333 445566666665555 112221 22333555566666666666666666654433 3345556666
Q ss_pred HHhccchhHHHHHHHHHHHHc
Q 040965 278 IHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+..+.|+.++|..+|+++.+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 666666666666666666554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.075 Score=40.68 Aligned_cols=220 Identities=20% Similarity=0.123 Sum_probs=104.8
Q ss_pred cCCHhHHHHHHHHhhcCCCCCCCc---hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc-cCCchHHHHHHHHHHHhhc
Q 040965 39 NGCFGEAICVFKNMMGNVNLVRPN---EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN-EIVLSVFMGTALIDLYGKV 114 (311)
Q Consensus 39 ~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 114 (311)
.+....+...+....... +. ...+...... ....+.+..+...+...... ........+......+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELL----PNSDLAGLLLLLALA---LLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcC----ccccchHHHHHHHHH---HHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 355555666666665532 22 2222222221 12244455555555555442 2233344445555555566
Q ss_pred CCHHHHHHHHHHcccc--hH-hhHHHHHH-HHHcCCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHccccHHHHHH
Q 040965 115 GCLERAIRVFKSMVIK--DV-CTWNAMIS-SLASNSREKEALVMFDEMKEKGL--RANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 115 g~~~~A~~~~~~~~~~--~~-~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
+++..+.+.+...... +. ........ .+...|+++.|...+.+...... ......+......+...++.+.+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 109 GKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 6666666666655331 11 22222222 55566666666666666543211 0122233333333455566666666
Q ss_pred HHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 189 LFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 189 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
.+...... ... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....
T Consensus 189 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 189 LLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666542 112 2344555555555666666666666555 33333 2223333333334455666666666666555
Q ss_pred CC
Q 040965 266 PK 267 (311)
Q Consensus 266 ~~ 267 (311)
|.
T Consensus 267 ~~ 268 (291)
T COG0457 267 PD 268 (291)
T ss_pred cc
Confidence 54
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.057 Score=38.72 Aligned_cols=81 Identities=10% Similarity=0.044 Sum_probs=47.0
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc---ccchHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM---VIKDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|..+|.-+.-.++ -+..-+..|..++-..+++++|+..|... ...|+..+.....++...|+.+.|...|
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred CCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 6666666666666655442 23444555666666666666666666544 2234455555566666666666666666
Q ss_pred HHHHH
Q 040965 156 DEMKE 160 (311)
Q Consensus 156 ~~m~~ 160 (311)
.....
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 65554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.013 Score=40.41 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHc-------------------ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSM-------------------VIKDVCTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
..++.+++.++++.|+++....+++.. ..|+..+..+++.+|+..|++..|.++++...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345666777777777777777777654 2347788999999999999999999999997654
Q ss_pred -CCCCcHHHHHHHHHHHH
Q 040965 162 -GLRANEITFVAVLTACA 178 (311)
Q Consensus 162 -~~~~~~~~~~~l~~~~~ 178 (311)
+++.+..+|..|+.-+.
T Consensus 82 Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 66768889998887543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.023 Score=39.68 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=29.8
Q ss_pred HHhcCCHHHHHHHHHhC--CCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 213 LGRAGLLSEAKEFMRSM--PFE--P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~--~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
..+.|++++|.+.|+.+ ..+ | ....-..|+.+|.+.+++++|...+++.+++.|.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCC
Confidence 34556666666666555 111 1 113334455556666666666666666666665543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.089 Score=44.52 Aligned_cols=142 Identities=14% Similarity=0.062 Sum_probs=84.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040965 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111 (311)
Q Consensus 32 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (311)
++.-.-+..+..+-++.-.++++ +.||-.+.-+++. .-. ..-..++++++++.++.|-. .+-...
T Consensus 174 IMq~AWRERnp~aRIkaA~eALe----i~pdCAdAYILLA---EEe-A~Ti~Eae~l~rqAvkAgE~-------~lg~s~ 238 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALE----INPDCADAYILLA---EEE-ASTIVEAEELLRQAVKAGEA-------SLGKSQ 238 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH----hhhhhhHHHhhcc---ccc-ccCHHHHHHHHHHHHHHHHH-------hhchhh
Confidence 34444566777777777777777 6787766666653 111 22378888888888776511 000100
Q ss_pred --hhcCCHHHHHHHHHHcccch----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHH
Q 040965 112 --GKVGCLERAIRVFKSMVIKD----VCTWNAMISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVE 184 (311)
Q Consensus 112 --~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~ 184 (311)
...|.. ++....++ ...-..+..+.-+.|+.++|++.+++|.+....- .......|+.++...+.+.
T Consensus 239 ~~~~~g~~------~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 239 FLQHHGHF------WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhcccch------hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 011111 11111222 2222346666677888888888888887653111 2346677888888888888
Q ss_pred HHHHHHHHhh
Q 040965 185 LGLELFHSML 194 (311)
Q Consensus 185 ~a~~~~~~~~ 194 (311)
++..++.+.-
T Consensus 313 d~q~lL~kYd 322 (539)
T PF04184_consen 313 DVQALLAKYD 322 (539)
T ss_pred HHHHHHHHhc
Confidence 8888888864
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.096 Score=41.25 Aligned_cols=141 Identities=15% Similarity=0.105 Sum_probs=64.2
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 040965 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (311)
.....|++.+|..+|+...+.. +-+...-..++.+|...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 4445566666666666555442 112334445555566666666666665555432 11111111112233333444444
Q ss_pred HHHHHHHhCCCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCchhHHHHHHHHHhccc
Q 040965 221 EAKEFMRSMPFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLEL--QPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 221 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 283 (311)
+..++-++..-.| |...-..+...+...|+.+.|.+.+-.+++. +-.+..+-..|+..+.-.|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3344444442234 3344444445555566666665554444432 2223345555555555444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.18 Score=43.71 Aligned_cols=162 Identities=17% Similarity=0.072 Sum_probs=113.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcH-----HHHHHHHHHHHc----cccHHHHHHHHHHhhccCCCccch
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKG-LRANE-----ITFVAVLTACAR----AQLVELGLELFHSMLGKFEVVPIM 203 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 203 (311)
....+++...=.||-+.+++.+.+..+.+ +.-.. ..|..++..++. ....+.|.++++.+.++ .|+.
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s 266 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNS 266 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCc
Confidence 34456666677899999999999876542 22221 234444444443 45788999999999865 6776
Q ss_pred hhHHHH-HHHHHhcCCHHHHHHHHHhCC-CCC-----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHH
Q 040965 204 EHYGCV-VDLLGRAGLLSEAKEFMRSMP-FEP-----DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS 276 (311)
Q Consensus 204 ~~~~~l-~~~~~~~g~~~~A~~~~~~~~-~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (311)
..|... ...+...|++++|.+.|++.. ... ....+--+...+...+++++|...+.++.+...-+...|..+.
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 666543 356678899999999999762 111 2233444556678899999999999999987776766776554
Q ss_pred H-HHhccchh-------HHHHHHHHHHHHc
Q 040965 277 N-IHAGLERW-------NRATDLRKAMVEA 298 (311)
Q Consensus 277 ~-~~~~~g~~-------~~A~~~~~~m~~~ 298 (311)
. ++...|+. ++|.++|.+....
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 4 45567777 8888998887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.087 Score=42.69 Aligned_cols=217 Identities=12% Similarity=0.032 Sum_probs=122.8
Q ss_pred cCcchhHHHHHHHHhhcc--CCchHHHHHHHHHHHhhcCCHHHHHHHHHH-c---cc---c--hHhhHHHHHHHHHcCCC
Q 040965 79 EGGLYLGKQVHGYILRNE--IVLSVFMGTALIDLYGKVGCLERAIRVFKS-M---VI---K--DVCTWNAMISSLASNSR 147 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~---~~---~--~~~~~~~l~~~~~~~~~ 147 (311)
..+.++++..|.+.+..- ......++..+..+.++.|.+++++..--. | .+ . --..|..+..++-+.-+
T Consensus 19 s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~ 98 (518)
T KOG1941|consen 19 SNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCE 98 (518)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555555444321 111234455566667777777766553221 1 11 1 12345555566655556
Q ss_pred HHHHHHHHHHHHHc-CCCC---cHHHHHHHHHHHHccccHHHHHHHHHHhhccCC----CccchhhHHHHHHHHHhcCCH
Q 040965 148 EKEALVMFDEMKEK-GLRA---NEITFVAVLTACARAQLVELGLELFHSMLGKFE----VVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 148 ~~~a~~~~~~m~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~ 219 (311)
+.+++.+-+.-... |..| .-....++..++...+.++++++.|+...+--. ......++..|...|.+..++
T Consensus 99 f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~ 178 (518)
T KOG1941|consen 99 FHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDY 178 (518)
T ss_pred hhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhh
Confidence 66666655543321 2222 113344566777778888888888887664211 112345678888888888888
Q ss_pred HHHHHHHHhC-------CCCCCcchHH-----HHHHHHHhcCChhHHHHHHHHHHhcC------CCchhHHHHHHHHHhc
Q 040965 220 SEAKEFMRSM-------PFEPDASVLG-----ALLGACKIHGAVDLCHEVGRRLLELQ------PKHCGRYVVLSNIHAG 281 (311)
Q Consensus 220 ~~A~~~~~~~-------~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~ 281 (311)
++|.-+..+. ++.--..-|. .+.-++...|....|.+..+++.++. +........+.+.|..
T Consensus 179 ~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~ 258 (518)
T KOG1941|consen 179 EKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRS 258 (518)
T ss_pred hHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 8877665444 2221112222 23345778888888888888877622 2223345577888888
Q ss_pred cchhHHHHHHHHHH
Q 040965 282 LERWNRATDLRKAM 295 (311)
Q Consensus 282 ~g~~~~A~~~~~~m 295 (311)
.|+.+.|..-|+..
T Consensus 259 ~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 259 RGDLERAFRRYEQA 272 (518)
T ss_pred cccHhHHHHHHHHH
Confidence 88888777766643
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.13 Score=41.95 Aligned_cols=86 Identities=12% Similarity=0.032 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
.+.+..+.-+...|+...|.++-.+.++ |+..-|..-+.+++..+++++...+-+. . .+|..|...+.+|.+.|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k--KsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-PDKRFWWLKIKALAENKDWDELEKFAKS---K--KSPIGYEPFVEACLKYG 251 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C--CCCCChHHHHHHHHHCC
Confidence 3556667777889999999999999984 8999999999999999999988876543 2 23357889999999999
Q ss_pred hhHHHHHHHHHH
Q 040965 284 RWNRATDLRKAM 295 (311)
Q Consensus 284 ~~~~A~~~~~~m 295 (311)
+..+|..++.++
T Consensus 252 ~~~eA~~yI~k~ 263 (319)
T PF04840_consen 252 NKKEASKYIPKI 263 (319)
T ss_pred CHHHHHHHHHhC
Confidence 999999998774
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0074 Score=50.37 Aligned_cols=62 Identities=15% Similarity=0.009 Sum_probs=54.8
Q ss_pred CcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccch----hhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIM----EHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+...++.+..+|.+.|++++|+..|++.++ +.|+. .+|..+..+|...|+.++|.+.+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3578899999999999999999999999985 46663 35899999999999999999999998
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.044 Score=43.84 Aligned_cols=159 Identities=12% Similarity=0.063 Sum_probs=100.7
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH----HHHHHHHHhcCCH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY----GCVVDLLGRAGLL 219 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~ 219 (311)
..|++.+|-..++++.+. .+.|...+...=.+|+-.|+.+.-...++++..+ ..|+...| ..+.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 457777777777777765 3556777777777888888888888888887753 23443222 2233345577888
Q ss_pred HHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc----hhHHHHHHHHHhccchhHHHHHHHH
Q 040965 220 SEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH----CGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 220 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
++|++.-++. .+.| |....+++...+...|++.++.++..+-...-..+ ..-|-...-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887777 4444 44666667777777888888887777654311111 1124445555666678888888887
Q ss_pred HHHHccCCCCCc
Q 040965 294 AMVEAGIRKIPA 305 (311)
Q Consensus 294 ~m~~~~~~~~~~ 305 (311)
.-+-..+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654444444433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.14 Score=40.31 Aligned_cols=119 Identities=15% Similarity=0.129 Sum_probs=52.5
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHH---HHHHHHhcCChhH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGA---LLGACKIHGAVDL 253 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~ 253 (311)
....|+..+|...|+..... .+-+...--.++.+|...|+.+.|..++..++..-....+.. -+..+.+.....+
T Consensus 144 ~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34455555555555555432 111223344455555555555555555555532222222222 1222333333333
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
...+-++ ...+|++...-..+...+...|+.++|.+.+-.+.++
T Consensus 222 ~~~l~~~-~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 222 IQDLQRR-LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred HHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3222222 2235555555555555555555555555554444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.032 Score=43.29 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCC-ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---c-chHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEV-VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---A-SVLGAL 241 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-~~~~~l 241 (311)
..|+.-+. +.+.|++..|..-|...++.+.- .-....+-.|..++...|+++.|..+|..+ .-.|+ . ..+--|
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 35766664 45677799999999988875321 123345677889999999999999988887 22232 2 445556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.......|+.++|..+|+++.+.-|..+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 666788999999999999999888887644
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.07 Score=37.34 Aligned_cols=56 Identities=9% Similarity=0.073 Sum_probs=28.4
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 141 SLASNSREKEALVMFDEMKEKGL--RANEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
...+.|++++|.+.|+.+...-. +-....-..++.+|.+.++++.|...+++.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33445566666666655554410 112334445555555566666666555555544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.049 Score=45.76 Aligned_cols=117 Identities=12% Similarity=0.106 Sum_probs=74.1
Q ss_pred cHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 040965 182 LVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGR---------AGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHG 249 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 249 (311)
..+.|..+|.+........|+ ...|..+..++.. .....+|.++.++. .+.| |......+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 456777778877744345554 3344444433332 12334455555555 3344 4455555555556677
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+++.|...|+++..++|+...+|...+....-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 7888888888888888888778887777778888888888888775543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.12 Score=43.10 Aligned_cols=130 Identities=15% Similarity=0.046 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchH-HHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVL-GALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~ 245 (311)
..|-..+++-.+..-++.|..+|-++.+..-+.+++..+++++..+ ..|+...|..+|+-- ...||...| .-.+.-+
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fL 476 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFL 476 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4566677777778889999999999987722567888889988766 567888999999875 556777666 3455567
Q ss_pred HhcCChhHHHHHHHHHHhcCCC--chhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 246 KIHGAVDLCHEVGRRLLELQPK--HCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
...++-+.|..+|+..++.-.+ -...|..++.--..-|+...+..+-++|.+.
T Consensus 477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 7889999999999977652222 2458999999999999998888888877654
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.06 Score=38.78 Aligned_cols=136 Identities=8% Similarity=0.028 Sum_probs=88.2
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHH-H
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF-M 103 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~ 103 (311)
+...|..-+. +.+.+..++|+.-|..+.+.|-+-.| ....+.+.....+.|+...|...|.++-.....|-.. -
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~Yp----vLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd 132 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYP----VLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRD 132 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcch----HHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhH
Confidence 3445555555 46778889999999998887632223 3344444445555888999999999887765444332 1
Q ss_pred HH--HHHHHHhhcCCHHHHHHHHHHcccc----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 104 GT--ALIDLYGKVGCLERAIRVFKSMVIK----DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 104 ~~--~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
.. .-.-.+...|-++......+.+..+ -...-..|.-+-.+.|++..|.+.|..+......|
T Consensus 133 ~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 133 LARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 11 1233456778888888877766332 22334556667778899999999999887654444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.28 Score=42.00 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
....+.|+++.|.++.++.. +...|..|.....+.|+++-|.+.|.+.. -+..|+-.|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHH
Confidence 33445555555555544332 33455555555555555555555555432 13333334444555555555
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
+.+....+ |. ++....++.-.|+.++..+++.+.+
T Consensus 395 l~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 395 LAKIAEER-GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 44444332 11 2223333334455555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.14 Score=36.16 Aligned_cols=127 Identities=11% Similarity=0.023 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (311)
...++..+...+.+.....+++.+...+ ..+...++.++..|++.+ .+.....+.. .++......++..|.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 4456777777788888888888887776 356777888888887653 3444444442 112233455677778
Q ss_pred hcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 215 RAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH-GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
+.+.++++.-++.+++.. ...+..+... ++++.|.+++++ +.++..|..++..+..
T Consensus 81 ~~~l~~~~~~l~~k~~~~------~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 81 KAKLYEEAVELYKKDGNF------KDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HcCcHHHHHHHHHhhcCH------HHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 888888888888888622 2223333333 788888887775 2345577777766653
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.044 Score=43.82 Aligned_cols=117 Identities=9% Similarity=-0.016 Sum_probs=95.4
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHH----HHHHhcCC
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALL----GACKIHGA 250 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~----~~~~~~g~ 250 (311)
....|+.-+|-..+++++++ .+.|...+.--=++|...|+.+.-...++++ ...||.+.|..+= .++...|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 34568888888889999874 5667777777778999999999999999998 4467776655443 34568999
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+++|++.-+++.+++|.+..+-..+...+.-.|++.++.++..+-
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 999999999999999999888888999999999999999887653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.028 Score=43.83 Aligned_cols=98 Identities=15% Similarity=0.220 Sum_probs=69.3
Q ss_pred HHHHHHcc--cchHhhHHHHHHHHH-----cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc------------
Q 040965 121 IRVFKSMV--IKDVCTWNAMISSLA-----SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ------------ 181 (311)
Q Consensus 121 ~~~~~~~~--~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~------------ 181 (311)
+..|..+. ++|..+|.+.+..+. +.++.+-....++.|.+.|+.-|..+|+.|++.+-+..
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 34444443 556677777776664 34667777777888888888888888888887765432
Q ss_pred ----cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 182 ----LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 182 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
+-+-++.++++|... |+.||..+-..|++++.+.+..
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 345677888888655 8888888888888888777654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.067 Score=43.91 Aligned_cols=88 Identities=15% Similarity=0.043 Sum_probs=55.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHcccc------------------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVIK------------------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI 168 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 168 (311)
-.+.|.+.|++..|...|+.++.- -..+++.+.-++.+.+++..|+...++.+..+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 356788889999888888775211 12345556666666666666666666666553 34555
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
....=..+|...|+++.|+..|+++++
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 555555666666666666666666663
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.035 Score=37.92 Aligned_cols=90 Identities=20% Similarity=0.091 Sum_probs=59.5
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHHHHH---HHHHhc
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGALL---GACKIH 248 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~---~~~~~~ 248 (311)
+....|+++.|++.|.+.+.- .+.....||.-..++.-.|+.++|++-+++. |-+ ......+.+ ..|...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 566778888888888877742 2334567888888888888888888777766 211 222233333 236677
Q ss_pred CChhHHHHHHHHHHhcCCCc
Q 040965 249 GAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~ 268 (311)
|+.+.|..-|+.+-+++.+-
T Consensus 129 g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred CchHHHHHhHHHHHHhCCHH
Confidence 88888888888777776553
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.19 Score=40.86 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhcc-----CCch
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE-----IVLS 100 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~ 100 (311)
.+|-.+.+++-+.-++.+++.+-..-..... ..|. ...+..+.-+.+.++ .+.++++++.|+...+-. .-..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpg-t~~~~~~gq~~l~~~~Ahlg-ls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPG-TRAGQLGGQVSLSMGNAHLG-LSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCC-CCcccccchhhhhHHHHhhh-HHHHHHHHHHHHHHHHHhhccCCceee
Confidence 3566677777777777777777666554321 3331 111222222222233 344888888887776532 1123
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHccc-------chH------hhHHHHHHHHHcCCCHHHHHHHHHHHHH----cCC
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVI-------KDV------CTWNAMISSLASNSREKEALVMFDEMKE----KGL 163 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~ 163 (311)
..++..|.+.|.+..|+++|.-+..+... .|. .+.-.|.-++...|....|.+.-++..+ .|-
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD 241 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 56788889999999999988777665511 121 1222344566777888888888777543 343
Q ss_pred CC-cHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 164 RA-NEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 164 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
.| -......+.+.|...|+.|.|+.-|+...
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 33 23445567778889999999888887765
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.16 Score=34.91 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=43.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCc
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 200 (311)
.....+..+..+|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++.++ |++
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~k 152 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GLK 152 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-H
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-chH
Confidence 3445567777888888888888887653 3567777778888888888888888888888776 554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.16 Score=34.90 Aligned_cols=141 Identities=15% Similarity=0.138 Sum_probs=81.8
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
+.-.|..++..++..+..... +..-++.++.-....-+-+-..++++.+-+.+++.|-. -.-.++.+|...|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcch--
Confidence 345688888888888876542 44455555544444455555666666665443333321 122344444444332
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
..-...-+.....+|+-+.-.++++.+.+.+..++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2333445567778888888888888887655556668888999999999999999999998888864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.023 Score=44.76 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
++..++..+...|+++.+.+.++++ ...| +...|..++.+|.+.|+...|+..|+++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 3444444444455555554444444 2222 34444455555555555555555444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.27 Score=42.11 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=85.7
Q ss_pred HHHhhcCCHHHHHHHHH--Hcccc-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 109 DLYGKVGCLERAIRVFK--SMVIK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~--~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
....-.++++++....+ ++.+. +..-.+.++..+-+.|.++.|+.+...-. .-| ....+.|+++.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rF----eLAl~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRF----ELALQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHH----HHHHHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHh----HHHHhcCCHHH
Confidence 33445677777666554 22211 33446677777778888888887754311 112 33456788888
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
|.++.++. ++...|..|.+...+.|+++-|++.|++.+ -+..|+-.|...|+.+...++.+.+...+
T Consensus 337 A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 87653322 255578888888888888888888888875 34556666777888777777776665443
Q ss_pred CCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 266 PKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
-.+ ....++.-.|+.++..+++.
T Consensus 404 ~~n-----~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 DIN-----IAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -HH-----HHHHHHHHHT-HHHHHHHHH
T ss_pred CHH-----HHHHHHHHcCCHHHHHHHHH
Confidence 322 22223333345555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.33 Score=37.25 Aligned_cols=50 Identities=6% Similarity=-0.096 Sum_probs=24.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh----cCCCchhHHHHHHHHHhccchhHHHHHH
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLE----LQPKHCGRYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 291 (311)
.|-.+.-..|+..|...++.-.. .+|.+..+...|+.+|- .|+.+++.++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kv 249 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKV 249 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHH
Confidence 33334445566666666665443 23444445555555543 3444444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.72 Score=41.79 Aligned_cols=172 Identities=16% Similarity=0.121 Sum_probs=103.6
Q ss_pred hhhhhcCChHHHHHHHHHhccc-c--HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENMLKR-D--VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
+.+++..-++-|+.+-+.-..+ + ........+.+.+.|++++|..-|-+.+.. +.|.... . ...+.
T Consensus 342 ~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~s~Vi-----~---kfLda 410 (933)
T KOG2114|consen 342 DILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEPSEVI-----K---KFLDA 410 (933)
T ss_pred HHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CChHHHH-----H---HhcCH
Confidence 4455566666666665554221 1 123444556667889999999888887643 3443322 1 11223
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch-HhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD-VCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
.+...-..+++.+.+.|.. +...-+.|+++|.+.++.++-.++.+...+-. ..-....+..+.+.+-.++|..+-...
T Consensus 411 q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 3366777788888888865 34444678999999999988888877664111 111344556666666666666655443
Q ss_pred HHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 159 KEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
.. .......++ -..+++++|++++..+.
T Consensus 490 ~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 490 KK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred cc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 21 333333333 45688888888887663
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.17 Score=34.70 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=26.6
Q ss_pred hhhcCChHHHHHHHHHhc---cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 5 YVKNGDMDSAILLFENML---KRDVVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
++..|+++.|++.|.+.+ ......||.-..++.-.|+.++|++-+++..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 344555555555555542 12445555555555555555555555555544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.69 Score=39.46 Aligned_cols=98 Identities=12% Similarity=0.169 Sum_probs=66.9
Q ss_pred HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCc--chHHHHHHHHH
Q 040965 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP-F-EPDA--SVLGALLGACK 246 (311)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~~ 246 (311)
..+..++.+.|+.++|++.++++++......+......|+.++...+.+.++..++.+-. + -|.. ..|+..+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 456667788999999999999998753333345577889999999999999999998872 2 2433 34554432222
Q ss_pred hcCC---------------hhHHHHHHHHHHhcCCCc
Q 040965 247 IHGA---------------VDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 247 ~~g~---------------~~~a~~~~~~~~~~~~~~ 268 (311)
..++ -..|.+.+.++.+.+|--
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 2222 123557778877766654
|
The molecular function of this protein is uncertain. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.95 Score=40.36 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=106.4
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh-------hhhhcCcchh
Q 040965 12 DSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA-------GLVNEGGLYL 84 (311)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~-------~~~~~~~~~~ 84 (311)
+.|.++.++ .|.+..|..+.....+.-.++.|...|-+... .|.......|-.... ...--|++++
T Consensus 680 edA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d-----Y~Gik~vkrl~~i~s~~~q~aei~~~~g~fee 752 (1189)
T KOG2041|consen 680 EDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD-----YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEE 752 (1189)
T ss_pred HHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc-----ccchhHHHHhhhhhhHHHHhHhHhhhhcchhH
Confidence 344444333 45677888888877777778888777766542 222211111111000 0111456999
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----hHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----DVCTWNAMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
|+++|-++-++. ..+..+.+.|++-...++++.-... -...|+.+...+.....|++|.++|..-.
T Consensus 753 aek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 753 AEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred hhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998877664 2456677778888877777653211 12355555555555555555555554321
Q ss_pred H---------------------cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 040965 160 E---------------------KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218 (311)
Q Consensus 160 ~---------------------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 218 (311)
. ...+-+....-.+..++.+.|.-++|.+.+-+.. .|. .-+..|...++
T Consensus 824 ~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-----~pk-----aAv~tCv~LnQ 893 (1189)
T KOG2041|consen 824 DTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-----LPK-----AAVHTCVELNQ 893 (1189)
T ss_pred chHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-----CcH-----HHHHHHHHHHH
Confidence 0 1122344445556666666666666666554432 111 22445566667
Q ss_pred HHHHHHHHHhCC
Q 040965 219 LSEAKEFMRSMP 230 (311)
Q Consensus 219 ~~~A~~~~~~~~ 230 (311)
+.+|.++-++..
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 777777766653
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.98 Score=40.45 Aligned_cols=280 Identities=13% Similarity=0.057 Sum_probs=158.3
Q ss_pred ChhhhhhcCChHHHHHHHHHhcccc---HHHHHHHHHHHHhcCCH--hHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRD---VVSWTSIINGFVRNGCF--GEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG 75 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 75 (311)
+|+-+...+.+..|+++-..+..|. ..+|.....-+.+..+. +++++.+++=.... ..|. .+|..+.. .
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~~~-iSy~~iA~---~ 516 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LTPG-ISYAAIAR---R 516 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CCCc-eeHHHHHH---H
Confidence 3566777888888988888885553 45666666666665332 34555555444322 2333 33443333 2
Q ss_pred hhhcCcchhHHHHHHHHhhccCC----chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-hHhhHHHHH----------H
Q 040965 76 LVNEGGLYLGKQVHGYILRNEIV----LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMI----------S 140 (311)
Q Consensus 76 ~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~----------~ 140 (311)
....|+.+.|..+++.=.+.+.. .+..-+...+.-..+.|+.+-...++-.+... +...+...+ .
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~ 596 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYR 596 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHH
Confidence 23377788888877654433211 11222334455556667777666666555222 111111111 1
Q ss_pred HHHc------------CCCHHHHHHHHH--HHHH----cCCCCcHHHHHHHHHHHHcccc----------HHHHHHHHHH
Q 040965 141 SLAS------------NSREKEALVMFD--EMKE----KGLRANEITFVAVLTACARAQL----------VELGLELFHS 192 (311)
Q Consensus 141 ~~~~------------~~~~~~a~~~~~--~m~~----~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~ 192 (311)
-+++ .++-.++...|. .... .|..|+. .....++.+... ..+-+.+.+.
T Consensus 597 ~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~ 673 (829)
T KOG2280|consen 597 QFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRT 673 (829)
T ss_pred HHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 1111 122222222111 1000 1222322 223333443332 2222334444
Q ss_pred hhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHH
Q 040965 193 MLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
+..+++..-...+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..+++++-+++-+.. .+ |.-|
T Consensus 674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAksk---ks--PIGy 747 (829)
T KOG2280|consen 674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSK---KS--PIGY 747 (829)
T ss_pred HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhcc---CC--CCCc
Confidence 44444544444456666667778999999999999997 588899988889999999998877765543 22 3368
Q ss_pred HHHHHHHhccchhHHHHHHHHHH
Q 040965 273 VVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 273 ~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
.-...+|.+.|+.++|.+++-+.
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv 770 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRV 770 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhcc
Confidence 88889999999999999998664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.012 Score=29.75 Aligned_cols=31 Identities=29% Similarity=0.200 Sum_probs=19.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
+|..+...|...|++++|...|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555556666666666666666666666664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.77 Score=38.66 Aligned_cols=135 Identities=15% Similarity=0.184 Sum_probs=103.8
Q ss_pred chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhH-H
Q 040965 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKG-LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHY-G 207 (311)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 207 (311)
.-..+|-..+++-.+..-.+.|..+|-++.+.| +.++...+++++..++ .|+...|..+|+.-+.. -||...| +
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 345667778888888888999999999999888 5678888888887655 68888999999887765 3343333 4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--CCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM--PFEPD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
..+.-+.+.++-+.|..+|+.. .+..+ ...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 5566777889999999999966 33333 5778888887788899988888888888777764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.075 Score=39.31 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=73.5
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcC
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVPI---MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHG 249 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g 249 (311)
.-+++.|++++|..-|..++..+...+. ...|..-..++.+.+.++.|++-..+. .+.|+. .....-..+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 4578899999999999999875322221 233444556777889999888877666 444432 23333345688889
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
.+++|+.-|+++.+.+|....+-...++.
T Consensus 183 k~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 99999999999999999876666555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.098 Score=40.91 Aligned_cols=98 Identities=15% Similarity=0.127 Sum_probs=73.8
Q ss_pred HHHHHHhc--cccHHHHHHHHHHHHh-----cCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh-------------
Q 040965 15 ILLFENML--KRDVVSWTSIINGFVR-----NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA------------- 74 (311)
Q Consensus 15 ~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~------------- 74 (311)
++.|..+. ++|..+|-+.+..+.. .+.++=....++.|.+-| +.-|..+|+.|++.+-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyG--VerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYG--VERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhc--chhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 45555554 5577888888877754 366777777788888888 9999999999997531
Q ss_pred --hhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 75 --GLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 75 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
.+.++ -+=+++++++|...|+.||-.+-..|+++|.+.+-
T Consensus 132 F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 132 FLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 12222 45578899999999999999999999999988765
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.64 Score=37.29 Aligned_cols=63 Identities=11% Similarity=0.020 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHcCCCHH---HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 133 CTWNAMISSLASNSREK---EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
.+...++.+|...+..+ +|.++++.+...... ....+..-+..+.+.++.+.+.+.+.+|...
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 34555666666655543 344455555433111 2334444455555567777777777777764
|
It is also involved in sporulation []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.021 Score=28.80 Aligned_cols=30 Identities=27% Similarity=0.127 Sum_probs=16.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
+..+...+...|++++|.+.+++++++.|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 344455556666666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.58 Score=35.59 Aligned_cols=216 Identities=19% Similarity=0.108 Sum_probs=155.5
Q ss_pred chhHHHHHHHHhhccCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcc-----cchHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMV-----IKDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
...+...+.......... ....+......+...+++..+...+.... ......+......+...+++..+.+.+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555556666655543221 34666777888889999999999888764 235566777778888889999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHH-HHHccccHHHHHHHHHHhhccCCC--ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040965 156 DEMKEKGLRANEITFVAVLT-ACARAQLVELGLELFHSMLGKFEV--VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 231 (311)
.........+ ......... .+...|+.+.|...+.+.... .. ......+......+...++.+.+...+.+. ..
T Consensus 119 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 119 EKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 9888754333 222333333 788999999999999998542 21 123334444455567889999999999888 44
Q ss_pred CCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 232 EPD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 232 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.++ ...+..+...+...++++.+...+.......|.....+..+...+...+.++++...+.+..+..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 444 56677777888889999999999999999888754566666666667777899998888776643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.8 Score=41.06 Aligned_cols=82 Identities=9% Similarity=-0.019 Sum_probs=42.6
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcch--HHHHHHHHHh
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASV--LGALLGACKI 247 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~ 247 (311)
|.+....+.....+++|--.|+..-+ ...-+.+|..+|++.+|+.+..++....+... -..|+..+..
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH
Confidence 33344444555666666655555421 12234566666777777766666632222222 2445555666
Q ss_pred cCChhHHHHHHHHH
Q 040965 248 HGAVDLCHEVGRRL 261 (311)
Q Consensus 248 ~g~~~~a~~~~~~~ 261 (311)
.++.-+|-++..+.
T Consensus 1012 ~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEY 1025 (1265)
T ss_pred cccchhHHHHHHHH
Confidence 66665555555544
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.64 Score=35.13 Aligned_cols=163 Identities=15% Similarity=0.056 Sum_probs=96.7
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
-+.+||-+.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++.-.|++..|.+-+...-.....+|-...|--++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 46788888888899999999999999988764332333333333 34456888888877776655423333333333333
Q ss_pred HHHHhcCCHHHHHHHH-HhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-------hhHHHHHHHHHhcc
Q 040965 211 DLLGRAGLLSEAKEFM-RSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH-------CGRYVVLSNIHAGL 282 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 282 (311)
. ..-++.+|..-+ ++.. ..|..-|...+-.+. .|++. .+.+++++.....++ ..+|..|+.-+...
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 334666665444 4442 233333433332221 12221 123444444433232 35788899999999
Q ss_pred chhHHHHHHHHHHHHccC
Q 040965 283 ERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 283 g~~~~A~~~~~~m~~~~~ 300 (311)
|+.++|..+|+-.+..++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999987765543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.6 Score=39.58 Aligned_cols=49 Identities=10% Similarity=-0.074 Sum_probs=19.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
..++++.+...+..|-........-..-+++++...|+.++|...|++.
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444433211122222333444444444444444444443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.04 Score=29.90 Aligned_cols=35 Identities=17% Similarity=0.458 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT 65 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~ 65 (311)
.+|..+...|.+.|++++|.++|+++.+ ..|+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~----~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA----LDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH----HCcCCHH
Confidence 4677889999999999999999999988 4566544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.2 Score=37.90 Aligned_cols=144 Identities=10% Similarity=0.034 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHH-cCCCCc-HHHHHHHHHHHHc---------cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 147 REKEALVMFDEMKE-KGLRAN-EITFVAVLTACAR---------AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 147 ~~~~a~~~~~~m~~-~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
..+.|..+|.+... ....|+ ...|..+..++.. .....+|.+.-++..+. -+-|......+..+..-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHh
Confidence 35678888888772 224554 3444444433322 23455677777777653 23355566666676677
Q ss_pred cCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh--HHHHHHHHHhccchhHHHHHH
Q 040965 216 AGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG--RYVVLSNIHAGLERWNRATDL 291 (311)
Q Consensus 216 ~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~ 291 (311)
.++++.|...|++. ...||. .+|......+.-.|+.++|.+.++++.++.|.... .....++.|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999998 667776 44444444566799999999999999999998543 2333444666654 5667666
Q ss_pred HH
Q 040965 292 RK 293 (311)
Q Consensus 292 ~~ 293 (311)
+-
T Consensus 430 ~~ 431 (458)
T PRK11906 430 YY 431 (458)
T ss_pred Hh
Confidence 53
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.83 Score=35.45 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=27.2
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
..|.+.|.+..|..-++.|++.+.-.+. ...+-.+..+|...|-.++|...-+-+
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4455566666666666666654211111 122333445555556555555554444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.037 Score=28.53 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhh
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMM 53 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 53 (311)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999964
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.039 Score=27.87 Aligned_cols=32 Identities=16% Similarity=0.423 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN 62 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 62 (311)
.+|..+..+|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~----~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE----LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH----HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH----HCcC
Confidence 5788899999999999999999999987 5554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.46 Score=35.11 Aligned_cols=95 Identities=9% Similarity=-0.062 Sum_probs=53.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhccCCC--ccch----h
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGKFEV--VPIM----E 204 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~----~ 204 (311)
..+..+...|++.|+.++|.+.|.++.+....+. ...+..++......+++..+...+.++...... +++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455666677777777777777777666544433 234556666666677777777666665432111 1111 1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.|..| .+...+++.+|-+.|-..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 12221 233567888887777666
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.4 Score=36.65 Aligned_cols=148 Identities=10% Similarity=-0.043 Sum_probs=75.4
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC---cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc--chhh
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA---NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP--IMEH 205 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 205 (311)
...+|..++..+.+.|.++.|...+.++...+..+ +......-+..+-..|+..+|...++...+. .... +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45567777777888888888888888776643111 2233334445566777888888877777652 1111 1111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCcchHHHHHHHHHhc------CChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 206 YGCVVDLLGRAGLLSEAKEF-MRSMPFEPDASVLGALLGACKIH------GAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
...+...... ..+..... ........-...+..+..-.... +..+++...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000011222222222333 778888899999998888877777776666
Q ss_pred Hhc
Q 040965 279 HAG 281 (311)
Q Consensus 279 ~~~ 281 (311)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.04 Score=28.37 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=20.2
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.3 Score=35.84 Aligned_cols=127 Identities=13% Similarity=0.173 Sum_probs=79.7
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhh--c----CCHHHHHHHHHHcccc-------hHhhHHHHHHHHHcCCC-
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGK--V----GCLERAIRVFKSMVIK-------DVCTWNAMISSLASNSR- 147 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~- 147 (311)
+++...+++.+.+.|+..+..+|.+....... . -...+|.++|+.|.+. +..++..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 67778889999999988887766554333333 2 2356788888888443 33445544433 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHcccc--HHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 148 ---EKEALVMFDEMKEKGLRANE--ITFVAVLTACARAQL--VELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 148 ---~~~a~~~~~~m~~~~~~~~~--~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
.+.++.+|+.+.+.|+..+. .....++..+..... ..++.++++.+.+. ++++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHH
Confidence 35677788888887777632 334444433332222 44778888888777 88887777766553
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1 Score=34.46 Aligned_cols=126 Identities=11% Similarity=0.089 Sum_probs=63.2
Q ss_pred HcCCCHHHHHHHHHHHHHcCCC-----CcHHHHHHHHHHHHcc-ccHHHHHHHHHHhhccCCCcc-ch---hhHHHHHHH
Q 040965 143 ASNSREKEALVMFDEMKEKGLR-----ANEITFVAVLTACARA-QLVELGLELFHSMLGKFEVVP-IM---EHYGCVVDL 212 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~-----~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~---~~~~~l~~~ 212 (311)
.+..++++|...++...+.=.. .-...+..+...|-.. .++++|+..|+..-+-+...- +. ..+.-....
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 3445888888877776543100 0111122333333332 567777777777654321111 11 112222233
Q ss_pred HHhcCCHHHHHHHHHhCC---CCCCcchH---HHHHHH--H-HhcCChhHHHHHHHHHHhcCCCc
Q 040965 213 LGRAGLLSEAKEFMRSMP---FEPDASVL---GALLGA--C-KIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~---~~p~~~~~---~~l~~~--~-~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
-...+++.+|+++|++.. ...+..-| ..++.+ | ....|.-.+...+++..+.+|.-
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 345678888888888771 11111112 112221 1 22356667777778877788873
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.063 Score=26.95 Aligned_cols=28 Identities=21% Similarity=0.440 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
..|..+..++...|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4677888999999999999999999887
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.16 Score=40.92 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=71.7
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHG 249 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g 249 (311)
-.+-|+++|.+++|+..|...+ .+.| |++++..-..+|.+...+..|+.-.... .. +.-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3556889999999999999887 4566 7888888899999999999887766555 21 112234444444545678
Q ss_pred ChhHHHHHHHHHHhcCCCchhH
Q 040965 250 AVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
...+|.+-++.++++.|.+...
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHH
Confidence 8899999999999999987543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.44 Score=37.75 Aligned_cols=81 Identities=9% Similarity=0.146 Sum_probs=59.1
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhc----cCCCccchhhH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLG----KFEVVPIMEHY 206 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~ 206 (311)
-..++..++..+...|+.+.+.+.++++.... +.+...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 45567777788888888888888888877763 44777888888888888888888887776654 24777777666
Q ss_pred HHHHHH
Q 040965 207 GCVVDL 212 (311)
Q Consensus 207 ~~l~~~ 212 (311)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666555
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.07 Score=26.83 Aligned_cols=30 Identities=23% Similarity=0.149 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
+|..+...|...|++++|...|++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344555566677777777777777766665
|
... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.26 Score=32.06 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 148 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
.-+..+-+..+......|+.....+.+.+|.+.+++..|.++|+-+..+.+...+ .|..+++
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq 87 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence 3356666777777788888888999999999999999999999988876543322 6766664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.13 Score=41.46 Aligned_cols=94 Identities=13% Similarity=0.072 Sum_probs=65.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (311)
-.+-|.++|.+++|+..|...... .| +.+++..-..+|.+..++..|..--...+.- .+.-...|..-+.+-...
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--d~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--DKLYVKAYSRRMQARESL 178 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--hHHHHHHHHHHHHHHHHH
Confidence 356799999999999999987664 55 8888888888999999998887666655532 011223444445555555
Q ss_pred CCHHHHHHHHHhC-CCCCCc
Q 040965 217 GLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~~p~~ 235 (311)
|...+|.+-++.. ...|+.
T Consensus 179 g~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hhHHHHHHhHHHHHhhCccc
Confidence 6666666666665 667764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.47 E-value=4.7 Score=38.48 Aligned_cols=114 Identities=13% Similarity=0.062 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (311)
..|.+....+...+.+++|.-.|+..-+ ....+.+|...|++.+|..+-.++.. +-.--..+-..|+.-
T Consensus 940 ~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen 940 VIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSR 1008 (1265)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHH
Confidence 4455555555666777777766665322 12345667777888888877776642 111112223566777
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 213 LGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
+...+++-+|-++..+..-.|. ..+..+++...+++|..+.....
T Consensus 1009 L~e~~kh~eAa~il~e~~sd~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSDPE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHcccchhHHHHHHHHhcCHH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 7788888888888777742332 12233444555666665554443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.19 Score=35.36 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=47.1
Q ss_pred HhcCCHHHHHHHHHhC-CCCCCcchHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 214 GRAGLLSEAKEFMRSM-PFEPDASVLGALL-GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 214 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
...++++++..++..+ ...|+..-...+- ..+...|++++|.++|+++.+..+..+..-..+..++.-.|+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3578999999999888 4556554433332 236789999999999999988776665333333334434443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.4 Score=32.51 Aligned_cols=96 Identities=18% Similarity=0.119 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCCCcHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK------DVCTWNAMISSLASNSREKEALVMFDEMKEK---GLRANEITFVA 172 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ 172 (311)
..+..+...|++.|+.+.|.+.|.++... -...+..+|....-.+++..+...+.+.... |..++...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 56778999999999999999999998544 2355677888888899999999998887643 22222222112
Q ss_pred HHH--HHHccccHHHHHHHHHHhhccC
Q 040965 173 VLT--ACARAQLVELGLELFHSMLGKF 197 (311)
Q Consensus 173 l~~--~~~~~~~~~~a~~~~~~~~~~~ 197 (311)
+.. ++...+++..|-+.|-.....+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 222 2456789999999888876553
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.3 Score=31.83 Aligned_cols=86 Identities=16% Similarity=0.073 Sum_probs=41.1
Q ss_pred HccccHHHHHHHHHHhhccCCCccchhhHH-HHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYG-CVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCH 255 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~ 255 (311)
...++.+++..++..+. -+.|...... .-...+...|++.+|.++|+++ .-.|.......|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 34556666666666665 2344332221 1223445666666666666666 32344444444544444333333333
Q ss_pred HHHHHHHhcCC
Q 040965 256 EVGRRLLELQP 266 (311)
Q Consensus 256 ~~~~~~~~~~~ 266 (311)
..-+++.+.++
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 33444444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.6 Score=34.93 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=52.3
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----chhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 233 PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK----HCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 233 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
....++..+...+.+.|.++.|...+.++....+. .+.....-+......|+..+|...+++..+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~ 214 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCR 214 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34467888888899999999999999998875421 34456666778888899999999998888733
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.29 Score=35.03 Aligned_cols=96 Identities=17% Similarity=0.136 Sum_probs=60.1
Q ss_pred hHHHHHHH---HHhcCCHHHHHHHHHhC-CCCCCcchHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 205 HYGCVVDL---LGRAGLLSEAKEFMRSM-PFEPDASVLGALL-GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 205 ~~~~l~~~---~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
+.+.|+.. -.+.++.+.+..++..+ -.+|.......+- ..+...|++.+|..+|+.+.+..|..+.+-..+..++
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 44455543 34678999999999988 5567665554433 3467899999999999999887777653333344444
Q ss_pred hccchhHHHHHHHHHHHHccCC
Q 040965 280 AGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
...|+. .=..+-+++.+.+-.
T Consensus 89 ~~~~D~-~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 89 YALGDP-SWRRYADEVLESGAD 109 (160)
T ss_pred HHcCCh-HHHHHHHHHHhcCCC
Confidence 344432 222333445555543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.45 Score=30.67 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 147 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
|.-++.+-++.+...+..|+.....+.+.+|.+.+++..|.++|+-++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 55567777888888888899999999999999999999999999988765443 3335666554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.7 Score=32.36 Aligned_cols=130 Identities=8% Similarity=-0.010 Sum_probs=78.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH--HHHHHHHccccHHHHHHHHHHhhccCCCccch----hhHH
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV--AVLTACARAQLVELGLELFHSMLGKFEVVPIM----EHYG 207 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ 207 (311)
.|..++.... .+.+ +.....+.+..........++. .+...+...|++++|...++..+.. +.|. .+--
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~l 130 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAAL 130 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHH
Confidence 3444454443 3444 5555566666542121122222 2345678889999999999888743 2222 1222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSMPFE-PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
.|.......|.+|+|+..++...-+ ........-...+...|+-++|..-|++.++..+++
T Consensus 131 RLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 131 RLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 3445667889999999998887311 122222333456888999999999999998876443
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.055 Score=38.37 Aligned_cols=128 Identities=13% Similarity=0.083 Sum_probs=82.7
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++... +.. ...++..|.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd-----~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYD-----LDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS------CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccC-----HHHHHHHHHhcc
Confidence 466677778888888888888876655678888889999998887788777766221 222 234667777888
Q ss_pred CHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 218 LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 218 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
.+++|.-++.+++....... .+...++++.|.+++.+ .+++..|..++..+...+.
T Consensus 85 l~~~a~~Ly~~~~~~~~al~------i~~~~~~~~~a~e~~~~-----~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 85 LYEEAVYLYSKLGNHDEALE------ILHKLKDYEEAIEYAKK-----VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp SHHHHHHHHHCCTTHTTCSS------TSSSTHCSCCCTTTGGG-----CSSSHHHHHHHHHHCTSTC
T ss_pred hHHHHHHHHHHcccHHHHHH------HHHHHccHHHHHHHHHh-----cCcHHHHHHHHHHHHhcCc
Confidence 88888888888853332222 12344566666633332 2234577777777766554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=2.4 Score=34.05 Aligned_cols=245 Identities=11% Similarity=-0.083 Sum_probs=146.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc-chhHHHHHHHHh
Q 040965 15 ILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG-LYLGKQVHGYIL 93 (311)
Q Consensus 15 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~-~~~a~~~~~~~~ 93 (311)
..+++.+..+|.......+.++...|.. ++...+..+... +|...-...+.+++.++..+. .+++...+..+.
T Consensus 26 ~~L~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~-----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 26 DELFRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS-----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC-----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 3444555667888888888888888854 444445555432 344333344444455542211 256777777664
Q ss_pred hccCCchHHHHHHHHHHHhhcCC-----HHHHHHHHHHc-ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 040965 94 RNEIVLSVFMGTALIDLYGKVGC-----LERAIRVFKSM-VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167 (311)
Q Consensus 94 ~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 167 (311)
.. .++..+....+.++...+. ...+...+... ..++..+-...+.++.+.++ +++...+-.+.+. +|.
T Consensus 100 ~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~ 173 (280)
T PRK09687 100 LE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNG 173 (280)
T ss_pred hc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCH
Confidence 44 3445555555555554432 13344444333 44566777778888888887 4566776666653 344
Q ss_pred HHHHHHHHHHHccc-cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHH
Q 040965 168 ITFVAVLTACARAQ-LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACK 246 (311)
Q Consensus 168 ~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 246 (311)
..-...+.++.+.+ ..+.+...+..++. .++..+-...+.++.+.|+..-.-.+.+.+. .++ .....+.++.
T Consensus 174 ~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~--~~~~a~~ALg 246 (280)
T PRK09687 174 DVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGT--VGDLIIEAAG 246 (280)
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHc-CCc--hHHHHHHHHH
Confidence 55555555666543 24567777777764 3465667777888889988654444455554 233 3446677788
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
..|+. +|...+.++.+..|+. .+-...+.++.
T Consensus 247 ~ig~~-~a~p~L~~l~~~~~d~-~v~~~a~~a~~ 278 (280)
T PRK09687 247 ELGDK-TLLPVLDTLLYKFDDN-EIITKAIDKLK 278 (280)
T ss_pred hcCCH-hHHHHHHHHHhhCCCh-hHHHHHHHHHh
Confidence 88885 7888899988877754 35555555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.20 E-value=2.5 Score=34.23 Aligned_cols=155 Identities=10% Similarity=0.140 Sum_probs=89.5
Q ss_pred HhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh---hhcCcchhHHHHHHHHhhccCC---chHHHHHHHHHHHhhcC
Q 040965 42 FGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL---VNEGGLYLGKQVHGYILRNEIV---LSVFMGTALIDLYGKVG 115 (311)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g 115 (311)
+++.+.+++.+.+.| .+-+..+|.+..-..... ........+..+++.|.+..+- ++..++..++.. ..+
T Consensus 78 ~~~~~~~y~~L~~~g--Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAG--FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHHhc--cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 356778999999988 888877776644332220 1112367889999999987532 344555555443 333
Q ss_pred CH----HHHHHHHHHccc-----c-hHhhHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-Hcccc
Q 040965 116 CL----ERAIRVFKSMVI-----K-DVCTWNAMISSLASNSR--EKEALVMFDEMKEKGLRANEITFVAVLTAC-ARAQL 182 (311)
Q Consensus 116 ~~----~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~~~ 182 (311)
+. +.++.+|+.+.. . +....+.++...-...+ ..++.++++.+.+.|+++....|..+.-.. ...+.
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 33 445556655533 1 33333333333322222 458889999999999998877777665332 22222
Q ss_pred ---HHHHHHHHHHhhccCCCc
Q 040965 183 ---VELGLELFHSMLGKFEVV 200 (311)
Q Consensus 183 ---~~~a~~~~~~~~~~~~~~ 200 (311)
.+...++.+.+.+..+..
T Consensus 234 ~~~~~~i~ev~~~L~~~k~~~ 254 (297)
T PF13170_consen 234 EKIVEEIKEVIDELKEQKGFG 254 (297)
T ss_pred HHHHHHHHHHHHHHhhCcccC
Confidence 334444555555444433
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.6 Score=36.05 Aligned_cols=180 Identities=14% Similarity=0.076 Sum_probs=124.6
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC--CcHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLR--ANEITFVAV 173 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~l 173 (311)
++..+|...+..-...|+.+.+.-+|+...-| -...|--.+.-....|+.+-|..++....+--++ |....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35678888888889999999999999998665 3345555555555669999999888876654332 233333333
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchh-hHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCcchHHHHH----H-
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIME-HYGCVVDLLGRAGLLSEAK---EFMRSM-PFEPDASVLGALL----G- 243 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~----~- 243 (311)
+ +-..|+.+.|..+++.+.+. . |+.. .-..-+....+.|..+.+. +++... ...-+......+. +
T Consensus 375 f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 F--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred H--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 3 34568999999999999875 3 5532 2223345566788888887 555554 2233333333332 2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
.+...++.+.|..++.++.+..|++...|..+++.....+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 2456789999999999999999999888998888877655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.77 Score=33.58 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=29.3
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+++|...|+++...+|.+. .|..-+... .+|.++..++.+++..
T Consensus 96 F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~~ 139 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGLG 139 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS-
T ss_pred HHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHhh
Confidence 5677777777888888886 777666665 3577777777766543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.06 Score=27.33 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=17.3
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHH
Q 040965 98 VLSVFMGTALIDLYGKVGCLERAI 121 (311)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~ 121 (311)
|-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 345677777777777777777775
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.6 Score=31.73 Aligned_cols=133 Identities=10% Similarity=0.094 Sum_probs=64.3
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--CCHHHHHHHHHhC
Q 040965 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA--GLLSEAKEFMRSM 229 (311)
Q Consensus 152 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~ 229 (311)
.++++.+.+.+++|+...+..++..+.+.|+...-..++.. ++-+|.......+-.+... .-.+-|.+++.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~-----~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY-----HVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh-----cccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 34555555666777777777777777777765544443322 3333332222222211111 1133444555555
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 230 PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 230 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+ ..+..++..+...|++-+|.++.++....+.- ....++.+-.+.++...-..+++-..+
T Consensus 89 ~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~---~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 89 G-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSV---PARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccC---CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 23444555666677777777766664332211 122344444444444444444444333
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=1 Score=38.28 Aligned_cols=124 Identities=9% Similarity=0.039 Sum_probs=60.9
Q ss_pred ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHE 256 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~ 256 (311)
..|++-.|.+-+...++++.-.|+....- .......|+++.+.+.+... .+-....+...+++...+.|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~--~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLR--SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHH--HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34555544444444444323334332222 22334556666666666555 122344555556666666666666666
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCC
Q 040965 257 VGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIP 304 (311)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 304 (311)
.-.-|+...-.++.........--..|-++++...|+++...+.+.+.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~ 426 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQS 426 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcc
Confidence 666665544334333333333334445566666666666554444333
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.8 Score=37.91 Aligned_cols=224 Identities=11% Similarity=0.079 Sum_probs=90.7
Q ss_pred hhhhcCChHHHHHHHHH--hccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc
Q 040965 4 GYVKNGDMDSAILLFEN--MLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 81 (311)
++.-.|.++.|+..+-+ ....+.+.+...+..|.-.+-.+... ..+..... -.|....+..+|..|...-...+
T Consensus 267 ~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~-~~~~~ln~arLI~~Y~~~F~~td 342 (613)
T PF04097_consen 267 VLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDP-GDPPPLNFARLIGQYTRSFEITD 342 (613)
T ss_dssp HHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHHHTT----------------------------HHHHHHHHHHTTTTT-
T ss_pred HHHHHhhHHHHHHHHHhhccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecC-CCCCCcCHHHHHHHHHHHHhccC
Confidence 44556778888877766 22224444333333222111111111 22222110 11112567777777776655667
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHH-HHHHhhcCCHHHHH-----------HHHHH------cccchHhh---HHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTAL-IDLYGKVGCLERAI-----------RVFKS------MVIKDVCT---WNAMIS 140 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~-----------~~~~~------~~~~~~~~---~~~l~~ 140 (311)
...|.+.+-.+....-+.....+... -......++++.-+ .++++ ...++... ......
T Consensus 343 ~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~ 422 (613)
T PF04097_consen 343 PREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAR 422 (613)
T ss_dssp HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHHHH
Confidence 78888887766654322222222222 22222222221111 11222 11111111 122233
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH-HHHcccc-----------HHHHHHHHHHhhccCC----C-ccch
Q 040965 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLT-ACARAQL-----------VELGLELFHSMLGKFE----V-VPIM 203 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~-~~~~~~~-----------~~~a~~~~~~~~~~~~----~-~~~~ 203 (311)
-+-..|++++|+.+|.-..+.. .-....+.++. +...... ...|..+.+....... + ..+.
T Consensus 423 ~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~ 500 (613)
T PF04097_consen 423 EAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKNR 500 (613)
T ss_dssp HHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHH
T ss_pred HHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHH
Confidence 4456677777777776543210 00112222222 1222222 4455555555543211 1 1234
Q ss_pred hhHHHHHHH-----HHhcCCHHHHHHHHHhCCCCC
Q 040965 204 EHYGCVVDL-----LGRAGLLSEAKEFMRSMPFEP 233 (311)
Q Consensus 204 ~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~p 233 (311)
.|+..|++. +...|++++|++.++++++-|
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 555555543 457899999999999998777
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.90 E-value=1.5 Score=30.78 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=19.9
Q ss_pred HHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh
Q 040965 31 SIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74 (311)
Q Consensus 31 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 74 (311)
.++..+...+.......+++.+...+ . .+...++.++..++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~--~-~~~~~~~~li~ly~ 52 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN--S-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC--c-cchhHHHHHHHHHH
Confidence 34445555555555555555555443 1 33334444444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.85 E-value=2.4 Score=32.81 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 105 (311)
...|..-..+|....++++|...+.+..+- ..-|..-|+.- +. ++.|.-+.+++.+. +--+..|+
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~---yEnnrslfhAA--------Ka--yEqaamLake~~kl--sEvvdl~e 95 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG---YENNRSLFHAA--------KA--YEQAAMLAKELSKL--SEVVDLYE 95 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH---HHhcccHHHHH--------HH--HHHHHHHHHHHHHh--HHHHHHHH
Confidence 346777778888899999999888887631 12222222211 12 66666666666553 22345666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc---CCC--CcHHHHHHHHHHHHcc
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK---GLR--ANEITFVAVLTACARA 180 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~--~~~~~~~~l~~~~~~~ 180 (311)
.....|...|..+.|-..+++.-+ .....++++|+.+|++.... +-. --...+..+-..+.+.
T Consensus 96 KAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 96 KASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 677788888888877777665521 13456667777777764322 100 0122344555567777
Q ss_pred ccHHHHHHHHHHhhcc---CCCccch-hhHHHHHHHHHhcCCHHHHHHHHHhC---C---CCCCcchHHHHHHHHHhcCC
Q 040965 181 QLVELGLELFHSMLGK---FEVVPIM-EHYGCVVDLLGRAGLLSEAKEFMRSM---P---FEPDASVLGALLGACKIHGA 250 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~---~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~---~---~~p~~~~~~~l~~~~~~~g~ 250 (311)
.++++|-..+.+-... ....++. ..|...|-.|.-..++..|...++.- + -..+..+...|+.+| ..||
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD 242 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD 242 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence 7777776666543211 0112221 33556666777788999999999883 2 123557778888877 6788
Q ss_pred hhHHHHHHH
Q 040965 251 VDLCHEVGR 259 (311)
Q Consensus 251 ~~~a~~~~~ 259 (311)
.+++..++.
T Consensus 243 ~E~~~kvl~ 251 (308)
T KOG1585|consen 243 IEEIKKVLS 251 (308)
T ss_pred HHHHHHHHc
Confidence 888877654
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.81 E-value=2.8 Score=33.37 Aligned_cols=164 Identities=18% Similarity=0.106 Sum_probs=104.6
Q ss_pred hHhhHHHHHHHHHc------CC-----CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHH-------H
Q 040965 131 DVCTWNAMISSLAS------NS-----REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH-------S 192 (311)
Q Consensus 131 ~~~~~~~l~~~~~~------~~-----~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-------~ 192 (311)
...+|.+.++++.. +| -..+|.++|.-+.+..-+ ..+-..++.++....+..+|...+. +
T Consensus 121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRK 198 (361)
T COG3947 121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLHTTVYQLRK 198 (361)
T ss_pred chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHHHHHHHHHH
Confidence 34556666666541 12 146788888888765322 2344455666666666666655443 3
Q ss_pred hhcc------------------CCCccchhhHHHHHHHHHh-cCCHHHHHHHHHhC-C-CCC--------Cc-----chH
Q 040965 193 MLGK------------------FEVVPIMEHYGCVVDLLGR-AGLLSEAKEFMRSM-P-FEP--------DA-----SVL 238 (311)
Q Consensus 193 ~~~~------------------~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~-~~p--------~~-----~~~ 238 (311)
++.. .+..-|..-|...+....+ .-.++++.++.... | .-| |. .+|
T Consensus 199 aLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly 278 (361)
T COG3947 199 ALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLY 278 (361)
T ss_pred HhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHH
Confidence 3321 1223355556665544433 34577777776665 1 111 11 234
Q ss_pred HHH----HHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 239 GAL----LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 239 ~~l----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
..+ ...|...|.+.+|.++.++++..+|-+...+..|+..+...|+--.|.+-++++.
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 333 3568899999999999999999999998899999999999999777777777664
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.15 Score=26.91 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
++.|...|...|++++|..+++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHH
Confidence 3444444444555555555544444
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.63 E-value=1.4 Score=32.91 Aligned_cols=94 Identities=16% Similarity=0.114 Sum_probs=65.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHH
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRAN-----EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVD 211 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~ 211 (311)
-..-+.+.|++++|..-|.+.+.. +++. ...|..-..++.+.+.++.|+.--.+.++ +.|+ ......-..
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAe 176 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAE 176 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHH
Confidence 355678899999999999998876 3332 23455555678888999999887777764 4453 122233345
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 212 LLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
+|.+...+++|++-|+++ ...|..
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcch
Confidence 788888999999888888 445543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.15 Score=25.26 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=10.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCC
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
++.+.|++++|...|+++++..|
T Consensus 9 ~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 9 CYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHccCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.22 Score=24.63 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=25.9
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
++..++.++.+.|++++|.+.|+++.+.-+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 466788999999999999999999988643
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.23 E-value=1 Score=33.64 Aligned_cols=74 Identities=15% Similarity=-0.002 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccC--CCccchhhHHHHHHHHHhcCCHHHHH
Q 040965 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKF--EVVPIMEHYGCVVDLLGRAGLLSEAK 223 (311)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~ 223 (311)
++|.+.|-++...+.--+......|...| ...+.+++..++..+++-. +-.+|+..+.+|+..|.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 56777777776665444555444554444 4677777777777766432 22456777788888888888777764
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.4 Score=30.92 Aligned_cols=121 Identities=15% Similarity=0.166 Sum_probs=75.9
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchh-hHHHHH--HHHHhcC
Q 040965 142 LASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIME-HYGCVV--DLLGRAG 217 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~--~~~~~~g 217 (311)
+.+.+..++|+..|..+.+.|... ....-..........|+...|...|+++-.. ...|-.. -...|= -.+..+|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHHHHHHHhccc
Confidence 356688888888888888776442 1222223344567788888999999888755 2333221 111121 2345778
Q ss_pred CHHHHHHHHHhCCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 218 LLSEAKEFMRSMPFEPDA---SVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 218 ~~~~A~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
.++....-.+.+....+. ..-..|.-+-.+.|++..|...|.++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 888888888777212221 2234455566788999999999988875
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.17 Score=25.37 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678888999999999999999999876
|
... |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.02 E-value=2.3 Score=37.33 Aligned_cols=107 Identities=16% Similarity=0.038 Sum_probs=61.3
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
....+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..|+-.+...|+.+....
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3345667777777765543 3455677777777777777777777765432 3344445555666555444
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 233 (311)
+-....+. |. -| .-..+|...|+++++.+++.+-+.-|
T Consensus 714 la~~~~~~-g~-~N-----~AF~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 714 LASLAKKQ-GK-NN-----LAFLAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHHHHhh-cc-cc-----hHHHHHHHcCCHHHHHHHHHhcCcCc
Confidence 44444433 22 11 12234556677777777776664333
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.99 E-value=3.7 Score=32.35 Aligned_cols=247 Identities=13% Similarity=0.155 Sum_probs=141.3
Q ss_pred hcCChHHHHHHHHHhccc-------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcC---CCCCCCchHHHHHHHHHhhhh
Q 040965 7 KNGDMDSAILLFENMLKR-------DVVSWTSIINGFVRNGCFGEAICVFKNMMGN---VNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~p~~~~~~~ll~~~~~~ 76 (311)
+..+.++|+.-|.++.+. .-.+...++....+.|++++....|.+++.- .....-+..+.++++.-.+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445788999999988432 3346778999999999999999999887531 100122345566666543322
Q ss_pred hhcCcchhHHHHHHHHhhc-cCCch----HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------------hHhhHH
Q 040965 77 VNEGGLYLGKQVHGYILRN-EIVLS----VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------------DVCTWN 136 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~ 136 (311)
. . .+.....++.-++. .-..| -.|-+.|...|...|.+.+..+++.++... -...|.
T Consensus 119 ~-~--m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 119 K-N--MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred h-h--hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 1 2 44444444433321 00111 123346788888899999888888887221 134677
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHH-----HHccccHHHHHHHHHHhhccCCC--ccch---hh
Q 040965 137 AMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVLTA-----CARAQLVELGLELFHSMLGKFEV--VPIM---EH 205 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~ 205 (311)
.-|+.|...++-.....+|++...- ...|.+.... +|+- ..+.|++++|..-|-++-+.+.- .|-. --
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLK 274 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLK 274 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHH
Confidence 7788888888888888888875532 2234444333 3333 45678888876554444343222 2222 22
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHHhC---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 206 YGCVVDLLGRAGL--LSEAKEFMRSM---PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 206 ~~~l~~~~~~~g~--~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
|..|...+.+.|- ++. ++. +-.|.......++.+| ..+++.+-+++++.-..
T Consensus 275 YLVLANMLmkS~iNPFDs-----QEAKPyKNdPEIlAMTnlv~aY-Q~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 275 YLVLANMLMKSGINPFDS-----QEAKPYKNDPEILAMTNLVAAY-QNNDIIEFERILKSNRS 331 (440)
T ss_pred HHHHHHHHHHcCCCCCcc-----cccCCCCCCHHHHHHHHHHHHH-hcccHHHHHHHHHhhhc
Confidence 4445555555441 110 111 2234556667777777 44566666666555443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.57 Score=35.88 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=44.2
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchh-hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHH-HHHHhcCChhH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIME-HYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALL-GACKIHGAVDL 253 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~g~~~~ 253 (311)
|....+++.|+..|.+.+ -+.|+.. -|+.-+.++.+..+++.+.+--.+. .+.||..--..++ .+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 445556666666666555 2355542 3344555566666666665444333 4555554333333 23455556666
Q ss_pred HHHHHHHHH
Q 040965 254 CHEVGRRLL 262 (311)
Q Consensus 254 a~~~~~~~~ 262 (311)
|...+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 666666664
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.67 E-value=8.2 Score=35.53 Aligned_cols=177 Identities=11% Similarity=0.078 Sum_probs=106.4
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh-hhhcCcchhHHHHHHHHhhccCCchHHHHHHHH
Q 040965 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG-LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALI 108 (311)
Q Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 108 (311)
.+-+..+.+...++-|+.+-+.- ..+..+...+...|+. +.+.|++++|...|-+.... ++|+ .++
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~-------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ-------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 34556666777777777665442 3344444445544433 33477888888877666544 2332 244
Q ss_pred HHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
.-|....++..--..++.+.+. +...-+.|+.+|.+.++.++-.+..+.-. .|.. ..-....+..|.+.+-.++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 5556666666666666666443 44556678888888888888777766543 2211 1124456667777777777
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 231 (311)
|..+-.+.. . +......+ +...+++++|.++++.+++
T Consensus 482 a~~LA~k~~----~--he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 482 AELLATKFK----K--HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHHhc----c--CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 776654442 1 22233333 3467899999999999863
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.58 E-value=3.4 Score=33.32 Aligned_cols=47 Identities=6% Similarity=0.033 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
++++++.++..=+.- |+-||..++..+++.+.+.+++.+|.++...|
T Consensus 115 ~pq~~i~~l~npIqY-GiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQY-GIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred ChHHHHHHHhCcchh-ccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344555554444332 55556556666666666666655555554443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.49 E-value=4.1 Score=35.94 Aligned_cols=97 Identities=16% Similarity=0.089 Sum_probs=52.6
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (311)
.+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+..
T Consensus 648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l 711 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGL 711 (794)
T ss_pred hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHH
Confidence 34556666655544321 445566666666677777777666666542 44555555555655533
Q ss_pred HHHHHhC---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 223 KEFMRSM---PFEPDASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 223 ~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
..+-... | + .|.-.-+|...|+++++.+++.+-
T Consensus 712 ~~la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 712 AVLASLAKKQG-K-----NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHHHHhc
Confidence 3332222 2 1 122223455677777777776653
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.42 E-value=4.4 Score=31.91 Aligned_cols=49 Identities=12% Similarity=0.087 Sum_probs=26.5
Q ss_pred cCcchhHHHHHHHHhhccCCchHH---HHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVF---MGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
....++|+.-|++.++...+...+ ....++..+.+.|++++....+.++
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 334666666666666543332222 2233455666666666666666655
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.33 E-value=1.3 Score=31.38 Aligned_cols=75 Identities=16% Similarity=0.141 Sum_probs=48.3
Q ss_pred HHHHHHHHH---HHccccHHHHHHHHHHhhccCCCccch---hhHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CcchHHH
Q 040965 168 ITFVAVLTA---CARAQLVELGLELFHSMLGKFEVVPIM---EHYGCVVDLLGRAGLLSEAKEFMRSMPFEP-DASVLGA 240 (311)
Q Consensus 168 ~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ 240 (311)
...+.|+.. -...++++++..+++.+. -+.|+. .++. .-.+...|++++|.++|++..-.+ ....-..
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA 82 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKA 82 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence 334444433 345889999999999987 455653 3343 345678999999999999994333 4343444
Q ss_pred HHHHHHh
Q 040965 241 LLGACKI 247 (311)
Q Consensus 241 l~~~~~~ 247 (311)
|+..|..
T Consensus 83 L~A~CL~ 89 (153)
T TIGR02561 83 LLALCLN 89 (153)
T ss_pred HHHHHHH
Confidence 4444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.38 Score=25.29 Aligned_cols=29 Identities=14% Similarity=0.370 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
..+++.+...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999998865
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.88 E-value=2.9 Score=33.15 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=17.1
Q ss_pred HHHHHHhccchhHHHHHHHHHHH
Q 040965 274 VLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
.++..+.+.|++.+|..++..+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 56777888888888887766554
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.46 Score=26.99 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=25.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.+.-++.+.|++++|.+..+.+++..|++..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 35567889999999999999999999998743
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.21 E-value=1.2 Score=32.67 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=33.9
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch-----------hHHHHHHHHHHHHc
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER-----------WNRATDLRKAMVEA 298 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~ 298 (311)
-+++|..-|++++.++|+...++..++.+|...+. +++|...|++..+.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc
Confidence 35667777888888999988899999988876543 55566666665554
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.18 E-value=5 Score=29.95 Aligned_cols=88 Identities=13% Similarity=0.029 Sum_probs=50.3
Q ss_pred HHHHHhhcCCHHHHHHHHHHcc-cchHhhH-----HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 107 LIDLYGKVGCLERAIRVFKSMV-IKDVCTW-----NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~-----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
+...+...|++++|+..++... .+....+ ..|.......|.+++|+..++.....+. .......-.+.+...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455667777777777776553 2222222 2234555667777777777766544322 122233334566777
Q ss_pred ccHHHHHHHHHHhhcc
Q 040965 181 QLVELGLELFHSMLGK 196 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~ 196 (311)
|+-++|..-|.+.+..
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 7777777777777655
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.12 E-value=9.6 Score=33.11 Aligned_cols=175 Identities=10% Similarity=0.067 Sum_probs=109.1
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
.|.....+++..+.....+.-.+-+-.+|. ..+...|..++++|... ..++-..+++++.+..+ +......-+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHH
Confidence 345555667777777777776666666663 33666777888888877 66777788888777643 33334444444
Q ss_pred HHccccHHHHHHHHHHhhccCCCcc------chhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHHHHHHHHH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVP------IMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGALLGACK 246 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~ 246 (311)
+...++.+.+..+|.++..+ +-| -...|..|+.. -..+.+....+..++ +...-...+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 44558888888888887654 222 11244444432 134566666666655 32333344555556677
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...++++|.+++..+++.+..+..+-..++.-+.
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 7888888888888888877666655555555443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.10 E-value=1.8 Score=32.36 Aligned_cols=44 Identities=18% Similarity=0.103 Sum_probs=22.3
Q ss_pred HHhcCChhHHHHHHHHHHhcC----CCchhHHHHHHHHHhccchhHHH
Q 040965 245 CKIHGAVDLCHEVGRRLLELQ----PKHCGRYVVLSNIHAGLERWNRA 288 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A 288 (311)
|....|.+++..++-+++++. ..++..+..|+..+.+.|+++.|
T Consensus 150 yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 150 YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 333445555555555555422 11344555555555555555554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.1 Score=37.03 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=63.1
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChh
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVD 252 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 252 (311)
++..+.+.+.++....+++.+... +...+....+.++..|++.++.++..++++... ......++..|.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHH
Confidence 566777788899999999999865 444567788999999999998899999888552 133345666777888888
Q ss_pred HHHHHHHHHH
Q 040965 253 LCHEVGRRLL 262 (311)
Q Consensus 253 ~a~~~~~~~~ 262 (311)
++.-++.++-
T Consensus 88 ~a~~Ly~~~~ 97 (143)
T PF00637_consen 88 EAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHHHcc
Confidence 8888777654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.85 E-value=1.5 Score=35.16 Aligned_cols=100 Identities=11% Similarity=0.124 Sum_probs=66.0
Q ss_pred cCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-h-----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHH
Q 040965 96 EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-D-----VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 169 (311)
|.+.+..+...++..-....+++.++..+-++... + ..+-.+.++.+ -.-++++++.++..=.+.|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 44444455555555555667778887777666322 1 11112233333 33567788888888788888889899
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
+..+++.+.+.+++.+|..+.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999888888888888887776654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.71 E-value=1 Score=34.08 Aligned_cols=74 Identities=15% Similarity=0.062 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch---hHHHHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC---GRYVVLSNI 278 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~ 278 (311)
|.+..++.+.+.++.++|+...+.- +.+|.. ..-..++..++-.|++++|..-++-+-++.|... ..|..++++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4455677788889999999888765 556754 5556677889999999999999998888888743 356666655
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.7 Score=34.48 Aligned_cols=63 Identities=19% Similarity=0.063 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+.+-.+|.+.++++.|..+.+.+..+.|+++.-+.--+..|.+.|.+..|..=++...++...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 344456778888888888888888888888766666777788888888888877777766544
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.64 E-value=0.6 Score=22.19 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=10.3
Q ss_pred HHHHHHHHhccchhHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+..++..+...|++++|...+++.
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444444444444444444433
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.37 Score=22.58 Aligned_cols=23 Identities=13% Similarity=0.044 Sum_probs=13.9
Q ss_pred HHHHHHHHHhccchhHHHHHHHH
Q 040965 271 RYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
+...+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34456666666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=90.06 E-value=1.6 Score=28.49 Aligned_cols=84 Identities=7% Similarity=-0.022 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHhcc-ccHHHHHHHH--HHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHH
Q 040965 10 DMDSAILLFENMLK-RDVVSWTSII--NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK 86 (311)
Q Consensus 10 ~~~~A~~~~~~~~~-~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~ 86 (311)
..++|..+-+.+.. ++..-..+|| ..+...|+|++|..+.+.. ..||...|..+-.. + .|..++..
T Consensus 20 cHqEA~tIAdwL~~~~~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~------~~pdlepw~ALce~--r---lGl~s~l~ 88 (115)
T TIGR02508 20 CHQEANTIADWLHLKGESEEAVQLIRLSSLMNRGDYQSALQLGNKL------CYPDLEPWLALCEW--R---LGLGSALE 88 (115)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHccchHHHHHHhcCCC------CCchHHHHHHHHHH--h---hccHHHHH
Confidence 45677777777633 2223333344 4567889999999888776 67898888877663 3 34477777
Q ss_pred HHHHHHhhccCCchHHHHH
Q 040965 87 QVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~ 105 (311)
.-+..+...| .|....|.
T Consensus 89 ~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8888888888 44555443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.71 E-value=4.1 Score=26.63 Aligned_cols=86 Identities=9% Similarity=0.064 Sum_probs=56.8
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
..++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+....||...|.+|... +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 356777776666655422 222223335567788899999998888888888888766543 56777777777777777
Q ss_pred cCCCCcHHHH
Q 040965 161 KGLRANEITF 170 (311)
Q Consensus 161 ~~~~~~~~~~ 170 (311)
.| .|....|
T Consensus 97 sg-~p~lq~F 105 (115)
T TIGR02508 97 SG-DPRLQTF 105 (115)
T ss_pred CC-CHHHHHH
Confidence 76 4444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.33 E-value=3.7 Score=26.63 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=20.3
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
++.+-++.+... .+.|++....+-+.+|.+.+++..|.++|+..
T Consensus 25 e~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 25 ELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333444444332 44444444555555555555555555554433
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.19 E-value=1.3 Score=24.04 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=13.3
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 138 MISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.04 E-value=15 Score=32.07 Aligned_cols=174 Identities=11% Similarity=0.113 Sum_probs=113.9
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
|.....+++..+..+-+..-+..+..+|.. ..-+...|..++.++... .-+.-..+|+++.+..+. ++..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~----~~e~kmal~el~q~y~en----~n~~l~~lWer~ve~dfn-Dvv~~ 135 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLE----YGESKMALLELLQCYKEN----GNEQLYSLWERLVEYDFN-DVVIG 135 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHH----hcchHHHHHHHHHHHHhc----CchhhHHHHHHHHHhcch-hHHHH
Confidence 444566778888888888888888899988 445677777788766543 367778888888877543 33333
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc------h---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCcHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK------D---VCTWNAMISSLASNSREKEALVMFDEMKEK-GLRANEITFVAVL 174 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~------~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~ 174 (311)
..|...|-+ ++.+.+...|.++..+ + ...|.-+...- ..+.+....+...+... |...-...+.-+-
T Consensus 136 ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 136 RELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 445555555 8888888888887333 1 12555554322 35667777776666543 3334456677777
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL 212 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (311)
.-|....++++|++++..+++. ...|...-..++.-
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~ 248 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEH--DEKDVWARKEIIEN 248 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhh--cchhhhHHHHHHHH
Confidence 7788889999999999877754 22343344444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.98 E-value=7.2 Score=28.45 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=12.4
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHH
Q 040965 24 RDVVSWTSIINGFVRNGCFGEAI 46 (311)
Q Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~ 46 (311)
++...|..+++.+.+.|++....
T Consensus 27 ~~~~L~~lli~lLi~~~~~~~L~ 49 (167)
T PF07035_consen 27 VQHELYELLIDLLIRNGQFSQLH 49 (167)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHH
Confidence 34455555566665555554443
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=88.88 E-value=2.2 Score=27.48 Aligned_cols=51 Identities=18% Similarity=0.010 Sum_probs=28.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--chhHHHHHHHHHhccch
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK--HCGRYVVLSNIHAGLER 284 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~ 284 (311)
|...-..+...+...|+++.|++.+-++++.+++ +...-..|+..+.-.|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 3344455556667777777777777776665543 23455566666655554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.63 E-value=0.76 Score=24.89 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=19.2
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 274 VLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 46777788888888888888777543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.28 E-value=5.4 Score=26.18 Aligned_cols=44 Identities=11% Similarity=0.123 Sum_probs=25.6
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+..+-++.+... .+.|++.+..+.+.+|.+.+++..|.++|+.+
T Consensus 28 e~rrglN~l~~~-DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 28 ELRRGLNNLFGY-DLVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp HHHHHHHHHTTS-SB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444455555443 66677777777777777777777777777666
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.26 E-value=4.3 Score=30.90 Aligned_cols=74 Identities=14% Similarity=0.065 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC----CCcchHHHHHH
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE----PDASVLGALLG 243 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----p~~~~~~~l~~ 243 (311)
|...-+..+.+.+.+.+|+...+.-.+. -+.+..+-..+++.||-.|++++|..-++-. ... +....|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445566788899999999998887754 2335556678899999999999998777665 333 34466666665
Q ss_pred H
Q 040965 244 A 244 (311)
Q Consensus 244 ~ 244 (311)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=88.21 E-value=20 Score=32.62 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=108.5
Q ss_pred CchHHHHHHHHHhhhhhhcCcchhHHHHHHHHh-hccCCch--HHHHHHHHHHHh-hcCCHHHHHHHHHHccc----ch-
Q 040965 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-RNEIVLS--VFMGTALIDLYG-KVGCLERAIRVFKSMVI----KD- 131 (311)
Q Consensus 61 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~----~~- 131 (311)
.+...|..+|. -|++.++.+. +..++|. ..++..+...+. ...+++.|+..+++... ++
T Consensus 28 ~~l~~Y~kLI~------------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~ 95 (608)
T PF10345_consen 28 EQLKQYYKLIA------------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL 95 (608)
T ss_pred hhHHHHHHHHH------------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 35556666654 3344555555 3334443 345555666665 67889999999887621 11
Q ss_pred ----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCCcHHHHHHH-HHHHHccccHHHHHHHHHHhhccCC--Cc
Q 040965 132 ----VCTWNAMISSLASNSREKEALVMFDEMKEK----GLRANEITFVAV-LTACARAQLVELGLELFHSMLGKFE--VV 200 (311)
Q Consensus 132 ----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~--~~ 200 (311)
-.....++..+.+.+... |...+++..+. +..+-...|..+ +..+...++...|.+.++.+..... ..
T Consensus 96 ~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 96 TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGD 174 (608)
T ss_pred HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCC
Confidence 122345667777766666 88888886653 222333444444 3333334789999999988775432 23
Q ss_pred cchhhHHHHHHHHH--hcCCHHHHHHHHHhC-----CC-------CCCcchHHHHHHH--HHhcCChhHHHHHHHHHH
Q 040965 201 PIMEHYGCVVDLLG--RAGLLSEAKEFMRSM-----PF-------EPDASVLGALLGA--CKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 201 ~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~-----~~-------~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~ 262 (311)
|...++-.++.+.. +.+..+++.+.++++ +. .|-..+|..++.. +...|+++.+...++++.
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444433 456566666666554 11 2234555666654 456778777777766665
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.14 E-value=2 Score=26.65 Aligned_cols=46 Identities=11% Similarity=0.051 Sum_probs=35.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCchh---HHHHHHHHHhccchhHHHHHHH
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCG---RYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
...+.++|+..|+++++..++.+. ++..|+.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888999999999886665444 4456778888999998887764
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.96 E-value=23 Score=33.05 Aligned_cols=189 Identities=12% Similarity=0.074 Sum_probs=95.0
Q ss_pred HhhcCCHHHHHHHHHHc----ccch-------HhhHHHHH-HHHHcCCCHHHHHHHHHHHHHc----CCCCcHHHHHHHH
Q 040965 111 YGKVGCLERAIRVFKSM----VIKD-------VCTWNAMI-SSLASNSREKEALVMFDEMKEK----GLRANEITFVAVL 174 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~----~~~~-------~~~~~~l~-~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l~ 174 (311)
.....++.+|..++.++ ..|+ ...|+.+- ......|++++|.++-+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34557788888877766 2221 12333332 2334568888888887776543 1122344556666
Q ss_pred HHHHccccHHHHHHHHHHhhccCCCccchh---hHHHHH--HHHHhcCCHHHHH--HHHHhC-----CCCC----CcchH
Q 040965 175 TACARAQLVELGLELFHSMLGKFEVVPIME---HYGCVV--DLLGRAGLLSEAK--EFMRSM-----PFEP----DASVL 238 (311)
Q Consensus 175 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~l~--~~~~~~g~~~~A~--~~~~~~-----~~~p----~~~~~ 238 (311)
.+..-.|++++|..+.....+. .-.-+.. .|..+. ..+...|+...+. ..+... +-+| -..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 6677778888888777665432 1111222 222222 3344566333222 222222 1111 12233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh----cCCCchh---HHHHHHHHHhccchhHHHHHHHHHHHHccCCCC
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLE----LQPKHCG---RYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 303 (311)
..+..++.+ ++.+..-.....+ ..|.... .+..|+..+...|+.++|...++++......+.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 334444333 3333333333322 2232211 223567777788888888888888876555443
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=87.82 E-value=1.2 Score=20.96 Aligned_cols=28 Identities=14% Similarity=0.339 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
.+|..+...+...|+++.|...|+..++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3567788888889999999999988876
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=87.80 E-value=1.7 Score=21.04 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=23.0
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567888889999888888777777766543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=87.40 E-value=17 Score=30.81 Aligned_cols=186 Identities=15% Similarity=0.129 Sum_probs=114.1
Q ss_pred hcCCHHHHHHHHHHcccc----hHhhHHHHHHH-HHcCCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHccccH
Q 040965 113 KVGCLERAIRVFKSMVIK----DVCTWNAMISS-LASNSREKEALVMFDEMKEKGLRANE----ITFVAVLTACARAQLV 183 (311)
Q Consensus 113 ~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~-~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~ 183 (311)
-.|+.++|.+.+..+... ....|-.|+.+ .....++.+|+++|+...-. .|.. .....-+......|+.
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~ 201 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA 201 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence 358999999999888433 44556666654 45678899999999987643 4432 3344444556788999
Q ss_pred HHHHHHHHHhhccCCCccchhhH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPIMEHY-GCVVDLLGRA---GLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGR 259 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 259 (311)
+++..+-.....++...|-..-| ..+...+.+. -..+.-..++..|.-.--...|..+.+.-...|+.+.|...-+
T Consensus 202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88887777666655444433222 3333333333 3445556666666422334678888888889999999999888
Q ss_pred HHHhcCCCch----hHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 260 RLLELQPKHC----GRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 260 ~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
++..+...+. .....-..+-.-..+++++.+.+..+-...+
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 8887543221 1111112222334556677666665544433
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.37 E-value=13 Score=29.68 Aligned_cols=113 Identities=11% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHc--cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHH
Q 040965 148 EKEALVMFDEMKE-KGLRANEITFVAVLTACAR--AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKE 224 (311)
Q Consensus 148 ~~~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 224 (311)
..+|+++|+...- ..+--|..+...++..... ......-.++.+-+...++-.++..+...++..+++.+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHhC----CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 225 FMRSM----PFEPDASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 225 ~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
+++.- +...|...|..++......||..-...+..+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.29 E-value=0.35 Score=38.98 Aligned_cols=118 Identities=12% Similarity=0.027 Sum_probs=71.6
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a 254 (311)
....|.++.|++.|...+.. -++....|..-.+.+.+.+....|++-+... .+.||. ..|-.--.+....|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 44567788888887777653 2334455555666777777777777776666 555654 3333333445567788888
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 255 HEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
...+..+.+++-+.. +=..|=...-+.+..++-...+++-++
T Consensus 202 a~dl~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEA-NSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHH-HHHHHHHhccchhhhhhchhHHHHHHH
Confidence 888888777665532 333344444455555555555555444
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=87.02 E-value=11 Score=29.89 Aligned_cols=83 Identities=7% Similarity=-0.051 Sum_probs=49.5
Q ss_pred HHHHhhcCCHHHHHHHHHHc-ccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-----
Q 040965 108 IDLYGKVGCLERAIRVFKSM-VIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA----- 178 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----- 178 (311)
|.++...++|.++....-+- ..| .+.....-|-.|.+.+++..+.++-....+.--.-+...|.+++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 56777777777776654433 222 344445556667777777777777777665422223334666655544
Q ss_pred ccccHHHHHHHH
Q 040965 179 RAQLVELGLELF 190 (311)
Q Consensus 179 ~~~~~~~a~~~~ 190 (311)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777777765
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.92 E-value=13 Score=28.88 Aligned_cols=93 Identities=10% Similarity=0.107 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHc--CCCCcH---
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASN-SREKEALVMFDEMKEK--GLRANE--- 167 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~--~~~~~~--- 167 (311)
+|--..++|- .++.++|...++..+.- -...+-.+...|-.. .++++|+..|+..-+. |-..+.
T Consensus 76 ~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 3433344443 34666666665544221 111122344455443 6677777777766432 111122
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
..+..+...-...+++.+|+.+|+++...
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23334444456788999999999998764
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=86.83 E-value=1.9 Score=26.72 Aligned_cols=47 Identities=15% Similarity=0.109 Sum_probs=24.5
Q ss_pred ccccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHHHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSEAKEF 225 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~ 225 (311)
..++.++|+..|...+++..-.|+. .++..++.+|+.-|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665542222221 3445555666666666655544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.71 E-value=7.9 Score=33.30 Aligned_cols=122 Identities=16% Similarity=0.132 Sum_probs=74.9
Q ss_pred HcCCCHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 143 ASNSREKEALV-MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 143 ~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
...|+.-.|-+ ++..+....-.|+....... .+...|+++.+...+....+. +.....+...++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHHH
Confidence 34566655554 34444443334554443333 356778888888888776542 33445567778888888889999
Q ss_pred HHHHHHhC-CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 222 AKEFMRSM-PFE-PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 222 A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
|..+-+.| +.+ .+......-.......|-++++...|+++..++|+.
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 88888777 211 122222222233456677888888888888776653
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=86.69 E-value=14 Score=29.30 Aligned_cols=81 Identities=16% Similarity=0.073 Sum_probs=44.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHH-HHHHHHh
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV-VLSNIHA 280 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~ 280 (311)
++.....+...|.+.|++.+|+..|-.-. .|+...+..++...... ..|.+...|. ..+--|.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~-~~~~~~~~~ll~~~~~~---------------~~~~e~dlfi~RaVL~yL 152 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGT-DPSAFAYVMLLEEWSTK---------------GYPSEADLFIARAVLQYL 152 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHHHHHH---------------TSS--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcC-ChhHHHHHHHHHHHHHh---------------cCCcchhHHHHHHHHHHH
Confidence 55667778888889999988887765442 22222222222222222 2333333333 3455567
Q ss_pred ccchhHHHHHHHHHHHHc
Q 040965 281 GLERWNRATDLRKAMVEA 298 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~ 298 (311)
..++...|...++...+.
T Consensus 153 ~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 153 CLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HTTBHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHH
Confidence 777888888887777655
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.61 E-value=4.7 Score=31.31 Aligned_cols=54 Identities=13% Similarity=0.004 Sum_probs=26.3
Q ss_pred hcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 215 RAGLLSEAKEFMRSM-PFE-PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
..|++-++++.-.++ ... .|+..|-.-..+.+..=+.++|..-|.++++++|.-
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 345555555554444 222 233444444444444445555555566665555543
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=86.40 E-value=8.7 Score=26.55 Aligned_cols=43 Identities=12% Similarity=0.075 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHh--cCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 252 DLCHEVGRRLLE--LQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 252 ~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
+.+.++|+.|.. .+...+..|...+..+...|++++|.++|+.
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 388888888875 5566677888888888889999999888864
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.30 E-value=17 Score=29.76 Aligned_cols=58 Identities=3% Similarity=0.179 Sum_probs=34.9
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+.-+..+.|+..+|.+.|+.+.+...+..-......|+.++....-+.....++-+-
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444556778888888888887765332222234456777777666565555554443
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=85.96 E-value=6 Score=27.14 Aligned_cols=71 Identities=17% Similarity=0.233 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+..+.++.+...++.|+.......+.+|.+.+++..|.++|+-++.+.|... ..|-.+++ +..-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k--~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQK--QVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHH--HHHHHHHH---------HHHHHHHHh
Confidence 4556677777778899999999999999999999999999999887643332 24555553 444555555
Q ss_pred CC
Q 040965 230 PF 231 (311)
Q Consensus 230 ~~ 231 (311)
|+
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 43
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.73 E-value=7 Score=34.50 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--cchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD--ASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
+-+-.++..|.. ...|-....|.-.--+...|+...|...+... ...|- ....-.|.....+.|-...|..++.+
T Consensus 590 e~~~~~~~~~~~--~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q 667 (886)
T KOG4507|consen 590 EIGSFLFHAINK--PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQ 667 (886)
T ss_pred HHHHHHHHHhcC--CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHH
Confidence 344444444432 34444334443333344567888887777666 33332 23344455666667777777787777
Q ss_pred HHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 261 LLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.+.+....+-++..++++|.-..+.+.|++.|++..+...
T Consensus 668 ~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 668 ALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred HHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 7776665666777778888888888888888877766543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.60 E-value=23 Score=30.74 Aligned_cols=246 Identities=10% Similarity=0.070 Sum_probs=140.0
Q ss_pred hHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh---cCcchhHHHHHHHHhhcc-CCc-hHHHHHHHHHHHhhcCCH
Q 040965 43 GEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN---EGGLYLGKQVHGYILRNE-IVL-SVFMGTALIDLYGKVGCL 117 (311)
Q Consensus 43 ~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~---~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~ 117 (311)
+....+|++..+ .-|....|+..|..|..... ...+.....+++.....+ ..+ ....|..+.-+++....-
T Consensus 299 s~~~~v~ee~v~----~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~ 374 (568)
T KOG2396|consen 299 SRCCAVYEEAVK----TLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEA 374 (568)
T ss_pred HHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchH
Confidence 345577777766 45777777777777644321 113444455555544432 222 345666666666666543
Q ss_pred -HHHHHHHHHcccchHhhHHHHHHHHHcC-CCHHHH-HHHHHHHHHcCCCCcHHHHHHHH-HHHHccccHHHHHHHHHHh
Q 040965 118 -ERAIRVFKSMVIKDVCTWNAMISSLASN-SREKEA-LVMFDEMKEKGLRANEITFVAVL-TACARAQLVELGLELFHSM 193 (311)
Q Consensus 118 -~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~m~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~ 193 (311)
+-|..+..+....+...|..-++..... .+++-- .+++......-..+....|+... .........+.....+..+
T Consensus 375 r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~ 454 (568)
T KOG2396|consen 375 REVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV 454 (568)
T ss_pred hHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence 3344444456666777776666555532 232222 22233333332233334444444 1111111122222222222
Q ss_pred hccCCCccchhhH-HHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCc
Q 040965 194 LGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGAC--KIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 194 ~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
..|+..++ +.+++.+-+.|-..+|...+..+ .. +|+...|..++..- ...-+...+..+|+.+..-...+
T Consensus 455 -----~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d 529 (568)
T KOG2396|consen 455 -----IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD 529 (568)
T ss_pred -----cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC
Confidence 24454444 56778888899999999999988 22 34667777777542 23345788889999988644367
Q ss_pred hhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 269 CGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+..|...+..-...|..+.+-.++.+..+
T Consensus 530 ~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 530 SDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 77888888877788998888887766544
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.19 E-value=28 Score=31.27 Aligned_cols=148 Identities=10% Similarity=0.006 Sum_probs=88.0
Q ss_pred HhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhh-------ccCCchHHHHHHHHHHHhhc
Q 040965 42 FGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILR-------NEIVLSVFMGTALIDLYGKV 114 (311)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 114 (311)
...|.+.++.....| .........++......+...+.+.|..+++.+.+ .| .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888887766 12222222222222224456679999999988877 45 223445677777764
Q ss_pred C-----CHHHHHHHHHHcccc-hHhhHHHHHHHHHc---CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH--ccccH
Q 040965 115 G-----CLERAIRVFKSMVIK-DVCTWNAMISSLAS---NSREKEALVMFDEMKEKGLRANEITFVAVLTACA--RAQLV 183 (311)
Q Consensus 115 g-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~--~~~~~ 183 (311)
. +.+.|..++...... ++..-..+...+.. ..+...|.++|...-+.|.. ...-+..++.... -..+.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNL 380 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCH
Confidence 3 667788888776332 33333334444433 24678999999999888743 2222222221111 33478
Q ss_pred HHHHHHHHHhhcc
Q 040965 184 ELGLELFHSMLGK 196 (311)
Q Consensus 184 ~~a~~~~~~~~~~ 196 (311)
+.|..++.+..++
T Consensus 381 ~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 381 ELAFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHHHc
Confidence 8999999888776
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.10 E-value=6.8 Score=30.02 Aligned_cols=30 Identities=7% Similarity=0.166 Sum_probs=19.4
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
....++....+.|+.++|.+.|.++...+-
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 344556666677777777777777766543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.91 E-value=5.3 Score=22.69 Aligned_cols=38 Identities=13% Similarity=0.199 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHH
Q 040965 30 TSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLS 71 (311)
Q Consensus 30 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~ 71 (311)
..+.-++.+.|++++|.+..+.+++ +.|+......|-.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~----~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLE----IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH----HTTS-HHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh----hCCCcHHHHHHHH
Confidence 3466678899999999999999998 7888877766654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.58 E-value=17 Score=28.28 Aligned_cols=116 Identities=12% Similarity=0.002 Sum_probs=74.3
Q ss_pred hhhcCChHHHHHHHHHh--ccccHH-HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc
Q 040965 5 YVKNGDMDSAILLFENM--LKRDVV-SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~--~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 81 (311)
|....+++.|+.-|.+. ..|+.. -|..-+.++.+..+++.+..--.+.++ +.||..--...+..+....+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq----l~~N~vk~h~flg~~~l~s~~-- 93 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ----LDPNLVKAHYFLGQWLLQSKG-- 93 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh----cChHHHHHHHHHHHHHHhhcc--
Confidence 44556778888877776 455553 456677788888999988888888877 778888777777766544433
Q ss_pred chhHHHHHHHHhh----ccCCchHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 040965 82 LYLGKQVHGYILR----NEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126 (311)
Q Consensus 82 ~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (311)
++.++..+.+... ..+++-......|..+--+.-...+...+.++
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8888888877633 23333344555555544333344444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.49 E-value=58 Score=34.36 Aligned_cols=64 Identities=5% Similarity=-0.080 Sum_probs=52.4
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.+|....+.....|.++.|...+-++.+..++ ..+...+......|+...|+.++++..+.+..
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRLP--EIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 56777777778899999999888888776644 47888889999999999999999998876543
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=84.23 E-value=24 Score=29.67 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=0.0
Q ss_pred HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC----C----------------
Q 040965 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----P---------------- 230 (311)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~---------------- 230 (311)
......+...++++.-..++.+- +-.+.++-.+...+...|+.+.|.+++++. +
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~~------PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~ 87 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQKN------PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTS 87 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHHC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q ss_pred --------CCCCcchHHHHH---HHHHhcCChhHHHHHHHHHHhcCCC-chhHHHHHHHHHh-ccchhHHHHHHHHHHHH
Q 040965 231 --------FEPDASVLGALL---GACKIHGAVDLCHEVGRRLLELQPK-HCGRYVVLSNIHA-GLERWNRATDLRKAMVE 297 (311)
Q Consensus 231 --------~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 297 (311)
..-|...|.++. ..+.+.|-+..|.++.+-+..++|. |+-.-...|+.|+ +.++++--.++.+....
T Consensus 88 g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 88 GNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred CccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.17 E-value=20 Score=28.80 Aligned_cols=58 Identities=7% Similarity=0.046 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
++.....|..+|.+.+|.++.++....+ +.+...+..++..+...|+--.+.+-++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444566777788888888777776653 446667777777777777755555554443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.07 E-value=4.3 Score=35.73 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=71.0
Q ss_pred ccccHHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a 254 (311)
..|+...|...+..+.. ..|- .+....|.....+-|-...|-.++.+. .+ ...+.++..+.+++....+++.|
T Consensus 619 ~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 46888999999888763 3442 234555666777777777787777655 32 33446677778889999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHH
Q 040965 255 HEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
++.|+++.+..|+.+.+-+.|...
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999987766655443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=83.73 E-value=31 Score=30.62 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCcchHHHHHHH-
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P-FEPDASVLGALLGA- 244 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~- 244 (311)
.+|..-+..-...|+.+.+.-.|++..-.+.. =...|-..+.-....|+.+-|..++... . ..|+......+-..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~--Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCAL--YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh--hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 34444444455555555555555555432111 1112323333333335555555554444 1 11222222222112
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHH
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 289 (311)
.-..|+++.|..+++.+..--|.....-..-+....+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 223556666666666666544544333333344445555555555
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=83.26 E-value=40 Score=31.59 Aligned_cols=219 Identities=14% Similarity=0.104 Sum_probs=110.3
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCCCCch-------HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----cCCchHHH
Q 040965 35 GFVRNGCFGEAICVFKNMMGNVNLVRPNE-------ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN----EIVLSVFM 103 (311)
Q Consensus 35 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 103 (311)
......++.+|..++.+....- ..|+. ..++.+- +-.... .|+++++.++-+..... -..+....
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l--~~~~~~~~~~l~ae~~aL~-a~val~-~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFL--KAPMHSRQGDLLAEFQALR-AQVALN-RGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHh--CcCcccchhhHHHHHHHHH-HHHHHh-cCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 3456788888888888876543 22222 1233222 222333 77788888887766654 22344566
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc----hHhh---HHHHH--HHHHcCCC--HHHHHHHHHHHHHc-----CC-CCc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK----DVCT---WNAMI--SSLASNSR--EKEALVMFDEMKEK-----GL-RAN 166 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~l~--~~~~~~~~--~~~a~~~~~~m~~~-----~~-~~~ 166 (311)
+..+..+..-.|++++|..+..+..+. ++.. |..+. ..+..+|+ +.+.+..|...... .. .+-
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 677778888889999998887766332 3322 22222 23445663 33333333333221 00 112
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhcc---CCCccchhhH--HHHHHHHHhcCCHHHHHHHHHhC-----CCCC--C
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGK---FEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSM-----PFEP--D 234 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~-----~~~p--~ 234 (311)
..++..++.++.+ ++.+..-...-.+- ....|-...+ ..|+......|++++|...+.++ ...| +
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~ 656 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVD 656 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCch
Confidence 2334444444443 33332222221111 0112211122 25667777888888888887776 1111 2
Q ss_pred cchHHHHHHH--HHhcCChhHHHHHHHH
Q 040965 235 ASVLGALLGA--CKIHGAVDLCHEVGRR 260 (311)
Q Consensus 235 ~~~~~~l~~~--~~~~g~~~~a~~~~~~ 260 (311)
..+-...+.. ....|+.+.+.....+
T Consensus 657 ~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 657 YLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 2222222222 2456777777666655
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=82.99 E-value=11 Score=25.01 Aligned_cols=79 Identities=8% Similarity=0.077 Sum_probs=42.6
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
..++|..+.+.+...+.. ...+--.-+..+...|++++|...=.....||...|.+|.. .+.|-.+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~~-~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGEM-EEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTTT-HHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCcH-HHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 367777777777666532 22222334455667777777744444445566666655433 356777777777776655
Q ss_pred cC
Q 040965 161 KG 162 (311)
Q Consensus 161 ~~ 162 (311)
.|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 54
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.94 E-value=39 Score=31.18 Aligned_cols=128 Identities=19% Similarity=0.136 Sum_probs=74.7
Q ss_pred hhhhhhcCChHHHHHHHHHhccc-----cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC------------------
Q 040965 2 IDGYVKNGDMDSAILLFENMLKR-----DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL------------------ 58 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------ 58 (311)
|+-+.+.+.+++|...-+..... -...+...|..+...|++++|-...-.|......
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45567888899999888776322 2346777888888888888887776666432100
Q ss_pred --C------CCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHh-----------h---ccCCchHHHHHHHHHHHhhcCC
Q 040965 59 --V------RPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYIL-----------R---NEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 59 --~------~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~-----------~---~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
. +.+...|..++..+.... ...+-+..+.|...+ . .. .-+......|+..|...++
T Consensus 443 a~~lPt~~~rL~p~vYemvLve~L~~~-~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~-Se~~~L~e~La~LYl~d~~ 520 (846)
T KOG2066|consen 443 APYLPTGPPRLKPLVYEMVLVEFLASD-VKGFLELIKEWPGHLYSVLTIISATEPQIKQN-SESTALLEVLAHLYLYDNK 520 (846)
T ss_pred hccCCCCCcccCchHHHHHHHHHHHHH-HHHHHHHHHhCChhhhhhhHHHhhcchHHHhh-ccchhHHHHHHHHHHHccC
Confidence 1 123455666665544311 111222222211111 0 01 1122334558899999999
Q ss_pred HHHHHHHHHHcccch
Q 040965 117 LERAIRVFKSMVIKD 131 (311)
Q Consensus 117 ~~~A~~~~~~~~~~~ 131 (311)
+..|...+-....++
T Consensus 521 Y~~Al~~ylklk~~~ 535 (846)
T KOG2066|consen 521 YEKALPIYLKLQDKD 535 (846)
T ss_pred hHHHHHHHHhccChH
Confidence 999999998876554
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=82.75 E-value=15 Score=26.13 Aligned_cols=78 Identities=12% Similarity=0.285 Sum_probs=46.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHcc---------cchHhhHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCcHHHHHH
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMV---------IKDVCTWNAMISSLASNSR-EKEALVMFDEMKEKGLRANEITFVA 172 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ 172 (311)
..|.++.-....+++.....+++.+. ..+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 34555555566666666666666551 1244566666666655444 3445566666666666667777777
Q ss_pred HHHHHHcc
Q 040965 173 VLTACARA 180 (311)
Q Consensus 173 l~~~~~~~ 180 (311)
++.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77666554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.64 E-value=20 Score=27.55 Aligned_cols=159 Identities=12% Similarity=0.046 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCC-chHHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV-LSVFMG 104 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 104 (311)
+.+||-+.--+...|+++.|.+.|+...+- .|. ..|..+=++..-.- .|++..|.+-+.+.-+.+.. |-...|
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----Dp~-y~Ya~lNRgi~~YY-~gR~~LAq~d~~~fYQ~D~~DPfR~LW 172 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPT-YNYAHLNRGIALYY-GGRYKLAQDDLLAFYQDDPNDPFRSLW 172 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhcc----CCc-chHHHhccceeeee-cCchHhhHHHHHHHHhcCCCChHHHHH
Confidence 567888888888888888888888888773 332 22333322222222 56677777766666554322 222233
Q ss_pred HHHHHHHhhcCCHHHHHHH-HHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc-------HHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRV-FKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN-------EITFVAVLTA 176 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-------~~~~~~l~~~ 176 (311)
.-+.. ..-+..+|..- .++....|..-|..-|-.|.- |+.. ...+++++... -.-+ ..||-.+..-
T Consensus 173 LYl~E---~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 173 LYLNE---QKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HHHHH---hhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHH
Confidence 22221 22344555443 333444454444433322221 1111 12233333322 1111 3467777777
Q ss_pred HHccccHHHHHHHHHHhhcc
Q 040965 177 CARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~ 196 (311)
+...|+.++|..+|+-.+..
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 88888888888888877654
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.42 E-value=1.6 Score=37.06 Aligned_cols=95 Identities=9% Similarity=0.051 Sum_probs=68.5
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhH-HHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHY-GCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGACKIHG 249 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g 249 (311)
-+..+...+.++.|..++.++++ ..||...| ..-..++.+.+++..|..=+.++ ...|.. ..|..=..++...+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 34556778899999999999984 57765544 33347888899999888766655 545543 33433445667778
Q ss_pred ChhHHHHHHHHHHhcCCCchh
Q 040965 250 AVDLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~ 270 (311)
.+.+|...|+......|+++.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHH
Confidence 888899999988889999873
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.19 E-value=25 Score=28.35 Aligned_cols=219 Identities=9% Similarity=-0.032 Sum_probs=131.0
Q ss_pred CchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH----HHHHHHHHHc--ccchHhh
Q 040965 61 PNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL----ERAIRVFKSM--VIKDVCT 134 (311)
Q Consensus 61 p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~--~~~~~~~ 134 (311)
+|.......+.++...+ -+.+...+..+.+. ++...-...+.++...|+. .++...+..+ ..++..+
T Consensus 35 ~d~~vR~~A~~aL~~~~----~~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~V 107 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG----GQDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACV 107 (280)
T ss_pred CCHHHHHHHHHHHHhcC----cchHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHH
Confidence 45444444444433332 34444445444432 3555556667777777763 5677878766 4566666
Q ss_pred HHHHHHHHHcCCC-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHH
Q 040965 135 WNAMISSLASNSR-----EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCV 209 (311)
Q Consensus 135 ~~~l~~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 209 (311)
-...+.++...+. ...+...+..... .++..+-...+.++.+.++ +.+...+-.+++. ++...-...
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A 179 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWA 179 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHH
Confidence 6666666655432 1234444444333 3366666677778888776 4677777777653 333444555
Q ss_pred HHHHHhcC-CHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHH
Q 040965 210 VDLLGRAG-LLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRA 288 (311)
Q Consensus 210 ~~~~~~~g-~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 288 (311)
+.++.+.+ +.+.+...+..+-..+|..+-...+.++.+.|+. .+...+-+..+.+ + .....+.++...|.. +|
T Consensus 180 ~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~--~--~~~~a~~ALg~ig~~-~a 253 (280)
T PRK09687 180 AFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG--T--VGDLIIEAAGELGDK-TL 253 (280)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC--c--hHHHHHHHHHhcCCH-hH
Confidence 55555543 2446666666663367777777778888888874 5555555554432 2 345778888888885 68
Q ss_pred HHHHHHHHHccC
Q 040965 289 TDLRKAMVEAGI 300 (311)
Q Consensus 289 ~~~~~~m~~~~~ 300 (311)
...+.++.+...
T Consensus 254 ~p~L~~l~~~~~ 265 (280)
T PRK09687 254 LPVLDTLLYKFD 265 (280)
T ss_pred HHHHHHHHhhCC
Confidence 888888887544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.16 E-value=41 Score=30.82 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=21.3
Q ss_pred cCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHH
Q 040965 8 NGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVF 49 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 49 (311)
-|++++|+++|-++..+|.. |..+.+.|++-.+.+++
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLI 783 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHH
Confidence 47888888888777655432 33334444444444443
|
|
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=81.61 E-value=5.1 Score=30.06 Aligned_cols=29 Identities=21% Similarity=0.181 Sum_probs=11.8
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
|++.+|..++.++...|+.++|.+..+++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33334444444444444444444443333
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=81.21 E-value=33 Score=29.11 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=24.9
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHH--ccccHHHHHHHHHHhhc
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEI--TFVAVLTACA--RAQLVELGLELFHSMLG 195 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~ 195 (311)
...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556666666666666554 333332 2333333332 23345555555555543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.12 E-value=27 Score=28.12 Aligned_cols=83 Identities=10% Similarity=-0.066 Sum_probs=37.7
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREK 149 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 149 (311)
.+.+..+...+......+.. .....+...|.. ..+..+|..+|...... +......|...|.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHH
Confidence 44455666666555543311 122222333222 23455566666544333 23333334444443 33556
Q ss_pred HHHHHHHHHHHcCCC
Q 040965 150 EALVMFDEMKEKGLR 164 (311)
Q Consensus 150 ~a~~~~~~m~~~~~~ 164 (311)
+|..+|++..+.|..
T Consensus 131 ~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 131 KALKYYEKAAKLGNV 145 (292)
T ss_pred HHHHHHHHHHHcCCh
Confidence 666666666555543
|
|
| >PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B | Back alignment and domain information |
|---|
Probab=81.07 E-value=6.9 Score=23.05 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=30.5
Q ss_pred ChHHHHHHHHHh--ccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 10 DMDSAILLFENM--LKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 10 ~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
.++....+++.+ ...|-.-.-.+|.++...|++++|.++++++.+
T Consensus 5 ~~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 5 QLEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555566555 233555666788899999999999998888754
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=80.23 E-value=26 Score=27.32 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=29.4
Q ss_pred HHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc
Q 040965 123 VFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 123 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 166 (311)
+|.-...|++.....++..+. .+++++|.+.+.++-+.|..|.
T Consensus 230 VfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~ 272 (333)
T KOG0991|consen 230 VFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPE 272 (333)
T ss_pred hhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHH
Confidence 333345566666666666554 4788888888888888887764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 311 | |||
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 2e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 |
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 2e-12
Identities = 24/184 (13%), Positives = 53/184 (28%), Gaps = 10/184 (5%)
Query: 59 VRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLE 118
P E +L G ++ H + ++ A L
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQH---SQAQLSGQQQRLLAFFKCCLLTDQLP 144
Query: 119 RAIRVFKSM-------VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171
A + + + +NA++ A KE + + +K+ GL + +++
Sbjct: 145 LAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204
Query: 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPF 231
A L R +E + + + ++ RA +L + +
Sbjct: 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSL 264
Query: 232 EPDA 235
P
Sbjct: 265 PPQL 268
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 6e-04
Identities = 44/298 (14%), Positives = 81/298 (27%), Gaps = 90/298 (30%)
Query: 16 LLFENMLKR------DVVSWTS-IINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVS 68
LL + +V + N F C I + + + T++S
Sbjct: 237 LLKSKPYENCLLVLLNV--QNAKAWNAF-NLSC---KILLTTRFKQVTDFLSAATTTHIS 290
Query: 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL-YGKVGCLERAIRVFKSM 127
+ L + L L ++ DL + R + +
Sbjct: 291 LDHHSMTLTPDEVKSL--------------LLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 128 VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187
+ + TW+ N + V D++ E + VL
Sbjct: 337 IRDGLATWD--------NWKH----VNCDKLT----TIIES-SLNVLEP-------AEYR 372
Query: 188 ELFHSMLGKF-EVVPI-----------MEHYGC--VVDLLGRAGLLSE-AKEFMRSMPFE 232
++F L F I + VV+ L + L+ + KE S+P
Sbjct: 373 KMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-- 429
Query: 233 PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATD 290
S+ L K+ L H R +++ Y NI + +
Sbjct: 430 ---SIY--LELKVKLENEYAL-H---RSIVD-------HY----NIPKTFDSDDLIPP 467
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.87 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.86 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.83 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.82 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.82 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.8 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.79 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.79 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.78 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.78 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.76 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.75 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.75 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.74 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.74 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.74 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.74 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.73 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.73 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.73 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.73 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.72 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.72 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.72 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.71 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.7 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.69 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.68 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.66 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.66 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.64 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.64 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.61 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.6 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.59 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.59 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.58 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.57 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.57 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.57 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.55 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.48 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.47 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.46 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.46 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.44 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.44 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.42 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.41 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.39 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.36 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.36 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.34 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.34 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.32 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.3 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.3 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.3 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.28 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.27 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.26 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.26 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.25 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.24 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.24 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.24 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.22 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.2 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.19 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.18 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.17 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.16 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.16 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.16 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.15 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.15 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.13 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.12 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.12 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.12 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.09 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.08 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.07 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.06 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.05 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.04 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.04 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.04 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.02 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.01 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.0 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.0 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.98 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.97 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.96 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.95 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.94 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.93 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.93 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.92 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.89 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.89 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.88 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.88 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.87 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.87 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.86 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.86 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.86 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.85 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.85 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.85 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.84 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.84 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.82 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.81 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.8 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.78 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.78 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.78 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.78 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.74 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.71 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.7 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.7 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.7 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.69 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.69 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.67 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.67 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.65 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.64 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.64 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.63 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.63 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.62 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.6 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.59 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.57 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.55 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.53 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.49 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.47 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.4 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.39 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.36 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.33 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.3 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.24 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.24 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.19 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.19 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.14 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.12 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.12 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.03 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.98 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.95 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.94 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.9 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.89 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.82 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.79 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.64 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.39 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.38 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.23 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.22 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 97.11 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.06 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.04 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.03 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.89 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.86 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.66 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.64 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.62 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.55 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.53 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.53 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.51 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.89 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.82 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.76 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.69 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.11 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.06 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.84 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.83 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 94.62 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.6 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.59 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.77 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.7 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 93.41 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.13 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.01 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 92.93 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.77 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 92.68 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.64 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 92.06 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 91.33 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 90.76 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.44 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 90.29 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 89.8 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.4 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.93 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.72 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.37 | |
| 2nsz_A | 129 | Programmed cell death protein 4; PDCD4, tumor supp | 88.07 | |
| 2ion_A | 152 | PDCD4, programmed cell death 4, PDCD4; alpha-helic | 87.24 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 86.26 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 85.18 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 84.69 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 83.65 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 82.82 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 82.12 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.89 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.32 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-33 Score=237.13 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhh------hcCcchhHHHHHHHHhhccCCch
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV------NEGGLYLGKQVHGYILRNEIVLS 100 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~------~~~~~~~a~~~~~~~~~~~~~~~ 100 (311)
..++.+|++|++.|++++|+++|++|.+.| +.||..||+++|.+|+..+ +.+.++.|.++|++|.+.|+.||
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~G--v~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNG--VQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHT--CCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 468889999999999999999999999999 9999999999999987543 23457899999999999999999
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHc----ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSM----VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
..+|++++.+|++.|++++|.++|++| ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||++|+.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999 5679999999999999999999999999999999999999999999999
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA 216 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (311)
|++.|+.++|.++|++|.+. +..|+..||+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999887 9999999999999998763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-31 Score=232.23 Aligned_cols=290 Identities=10% Similarity=-0.012 Sum_probs=258.9
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhc
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNE 79 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~ 79 (311)
+..|.+.|++++|..+|+++.. ++..+|+.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.. .
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~---~ 352 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID---PYNLDVYPLHLASLHE---S 352 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCCTTHHHHHHHHHH---H
T ss_pred HHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC---cccHHHHHHHHHHHHH---h
Confidence 5678899999999999999966 789999999999999999999999999998754 3366778888876654 6
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFD 156 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (311)
|++++|.++++++.+.. +.+..+++.++.+|.+.|++++|.++|+++.. .+..+|+.++.+|.+.|++++|.++|+
T Consensus 353 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 431 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYT 431 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 67999999999999664 55788999999999999999999999998843 367899999999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-------
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM------- 229 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------- 229 (311)
++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++..|.+.|++++|.++|+++
T Consensus 432 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 432 TAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 998874 457889999999999999999999999999864 2346788999999999999999999999988
Q ss_pred CCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 230 PFEPD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 230 ~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+..|+ ..+|..++.+|.+.|++++|...++++.+.+|++..+|..++.+|.+.|++++|.+.|+++.+.+..
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 44677 6789999999999999999999999999999999999999999999999999999999999986543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=227.63 Aligned_cols=199 Identities=16% Similarity=0.187 Sum_probs=170.0
Q ss_pred HHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC------
Q 040965 44 EAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC------ 116 (311)
Q Consensus 44 ~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 116 (311)
.+..+.+++.+.+ ..+. ...++.+|.+|++ .|++++|.++|++|.+.|+.||..+||+|+.+|++.+.
T Consensus 8 ~~e~L~~~~~~k~--~~~spe~~l~~~id~c~k---~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 8 PSENLSRKAKKKA--IQQSPEALLKQKLDMCSK---KGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ------------------CHHHHHHHHHHHTTT---SCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred hHHHHHHHHHHhc--ccCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 4455566676666 4333 3457778887764 77799999999999999999999999999999987654
Q ss_pred ---HHHHHHHHHHc----ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHH
Q 040965 117 ---LERAIRVFKSM----VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLEL 189 (311)
Q Consensus 117 ---~~~A~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 189 (311)
+++|.++|++| ..||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence 78999999999 56799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCcchHHHHHHHHHhc
Q 040965 190 FHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM---PFEPDASVLGALLGACKIH 248 (311)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 248 (311)
|++|.+. |+.||..||+.||.+|++.|+.++|.+++++| +..|+..||+.++..|...
T Consensus 163 ~~~M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 163 DAHMVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999988 99999999999999999999999999999999 8899999999999988653
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-30 Score=225.82 Aligned_cols=288 Identities=10% Similarity=-0.035 Sum_probs=248.4
Q ss_pred hhhhhhcCChHHHHHHHHHhccc-------------------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc
Q 040965 2 IDGYVKNGDMDSAILLFENMLKR-------------------DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN 62 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~ 62 (311)
+.+|.+.|++++|..+|+++... +..+|+.++.+|.+.|++++|+++|++|.+. .|+
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~ 232 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV----DAK 232 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Cch
Confidence 57899999999999999965332 4889999999999999999999999999884 454
Q ss_pred hHH-HHHHHHH-----------------------------------hhhhhhcCcchhHHHHHHHHhhccCCchHHHHHH
Q 040965 63 EAT-YVSVLSS-----------------------------------CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA 106 (311)
Q Consensus 63 ~~~-~~~ll~~-----------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (311)
... +..+... ...+.+.|++++|.++++++.+. +++..+++.
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 332 2222110 11222466799999999999876 578999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (311)
++.+|.+.|++++|.++|+++.. .+..+++.++.++.+.|++++|.++++++.+.. +.+..++..++..|.+.|++
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 99999999999999999999843 367889999999999999999999999998663 45788999999999999999
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++ .. +++..++..++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999863 2335779999999999999999999999998 33 447789999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 262 LELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+..|+++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999886
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=192.73 Aligned_cols=285 Identities=15% Similarity=0.147 Sum_probs=180.0
Q ss_pred hhhhcCChHHHHHHHHHhc--cc-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENML--KR-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.|.+.|++++|+..|+++. .| +..+|..+..++.+.|++++|.+.|+++.+ ..|+.......+.. .+...|
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~--~~~~~g 149 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ----YNPDLYCVRSDLGN--LLKALG 149 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----HCTTCTHHHHHHHH--HHHTTS
T ss_pred HHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCcHHHHHHHHH--HHHHcc
Confidence 3444555555555555442 12 233455555555555555555555555544 23333222222211 111234
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
++++|.+.++++.+.. +.+..++..+..++.+.|++++|+..|+++... +...|..+...+...|++++|...+++
T Consensus 150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4666666666655543 223455556666666666666666666655322 344556666666666666666666666
Q ss_pred HHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCc
Q 040965 158 MKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDA 235 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~ 235 (311)
..+.. +.+..++..+...+...|++++|...|+++.+. .+.+..++..++.++.+.|++++|.+.|+++ ..+++.
T Consensus 229 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 305 (388)
T 1w3b_A 229 ALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA 305 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH
Confidence 65542 224667777778888888888888888888754 1223557788888888888888888888887 223456
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.++..+...+...|++++|...++++.+..|++..++..++.+|.+.|++++|...|+++.+.
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777788888888888888888888888888888778888888888888888888888888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-25 Score=184.37 Aligned_cols=283 Identities=16% Similarity=0.172 Sum_probs=213.6
Q ss_pred hhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhc
Q 040965 4 GYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNE 79 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 79 (311)
.+.+.|++++|...++.... .+..+|..+..++.+.|++++|++.|+++.+ ..|+. ..|..+..++. ..
T Consensus 42 ~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~---~~ 114 (388)
T 1w3b_A 42 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALR----LKPDFIDGYINLAAALV---AA 114 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH---HH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCcchHHHHHHHHHHHH---Hc
Confidence 34455666666666655522 2456777778888888888888888888776 44544 34555554433 25
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFD 156 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (311)
|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.|+++... +..+|..+...+...|++++|...|+
T Consensus 115 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 193 (388)
T 1w3b_A 115 GDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp SCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66888888888877764 234556667777888888888888888877432 45678888888888888888888888
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP- 233 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 233 (311)
++.+.+ +.+...+..+...+...|++++|...+++.... .| +..++..++.+|...|++++|.+.|+++ ...|
T Consensus 194 ~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 194 KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL---SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 887763 235677788888888888888888888888753 44 4677888889999999999999999888 4445
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
+..++..+...+...|++++|...++++.+..|++..++..++.++.+.|++++|...++++.+.
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45678888888999999999999999999999998889999999999999999999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-25 Score=185.64 Aligned_cols=287 Identities=13% Similarity=0.056 Sum_probs=240.4
Q ss_pred hhhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhh
Q 040965 2 IDGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLV 77 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~ 77 (311)
...|.+.|++++|+.+|+++.. .+..+|..++.++...|++++|+..|+++.+. .|+ ...+..+..++..
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~-- 106 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL----KMDFTAARLQRGHLLLK-- 106 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHH--
Confidence 3568899999999999999843 36889999999999999999999999999884 344 4555566554443
Q ss_pred hcCcchhHHHHHHHHhhccCCchH---HHHHHH------------HHHHhhcCCHHHHHHHHHHccc---chHhhHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSV---FMGTAL------------IDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMI 139 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 139 (311)
.|++++|.+.++++.+..+ .+. ..+..+ ...+.+.|++++|+..|+++.. .+..++..++
T Consensus 107 -~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 107 -QGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp -TTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 6779999999999998753 334 555555 4558999999999999999843 3678899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHH---------
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCV--------- 209 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l--------- 209 (311)
.+|.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++|...|+++.+. .|+ ...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~ 260 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 260 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999998763 447889999999999999999999999999854 443 3344444
Q ss_pred ---HHHHHhcCCHHHHHHHHHhC-CCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 210 ---VDLLGRAGLLSEAKEFMRSM-PFEPD-----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 210 ---~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
+..+...|++++|.+.|+++ ...|+ ...+..+...+.+.|++++|...++++.+..|++..+|..++.+|.
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 340 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYL 340 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 78899999999999999998 44565 3467778889999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHccC
Q 040965 281 GLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~ 300 (311)
..|++++|...++++.+...
T Consensus 341 ~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 341 IEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HTTCHHHHHHHHHHHHTTSS
T ss_pred HhcCHHHHHHHHHHHHHhCc
Confidence 99999999999999987543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.8e-23 Score=173.22 Aligned_cols=284 Identities=13% Similarity=0.070 Sum_probs=232.2
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch----HHHHHHHHH--
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE----ATYVSVLSS-- 72 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~----~~~~~ll~~-- 72 (311)
...|.+.|++++|...|+++.+ | +..+|..++.+|.+.|++++|.+.|+++.+ ..|+. ..+..+...
T Consensus 67 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~ 142 (450)
T 2y4t_A 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSENEEKEAQSQLIKSDE 142 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCCChhhHHHHHHHHHHHH
Confidence 3568899999999999999843 3 578999999999999999999999999988 44554 444444322
Q ss_pred -------hhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHH
Q 040965 73 -------CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSL 142 (311)
Q Consensus 73 -------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 142 (311)
...+...|++++|...++++.+.. +.+..++..++.+|.+.|++++|+..|+++.. .+..+|..++..|
T Consensus 143 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 112334778999999999999875 44678899999999999999999999999843 3678999999999
Q ss_pred HcCCCHHHHHHHHHHHHHcCCCCcHHHHHHH------------HHHHHccccHHHHHHHHHHhhccCCCccc-----hhh
Q 040965 143 ASNSREKEALVMFDEMKEKGLRANEITFVAV------------LTACARAQLVELGLELFHSMLGKFEVVPI-----MEH 205 (311)
Q Consensus 143 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~ 205 (311)
...|++++|...|+++.+.. +.+...+..+ ...+...|++++|...|+++++. .|+ ...
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~ 297 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRS 297 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHH
Confidence 99999999999999998763 2244444444 78899999999999999999864 343 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH------
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN------ 277 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~------ 277 (311)
+..++.++.+.|++++|.+.++++ ...| +...+..+..+|...|++++|...++++++..|+++.++..+..
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 377 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhh
Confidence 888999999999999999999998 4445 56889999999999999999999999999999999888888874
Q ss_pred ------HHhccc-----hhHHHHHHHHH
Q 040965 278 ------IHAGLE-----RWNRATDLRKA 294 (311)
Q Consensus 278 ------~~~~~g-----~~~~A~~~~~~ 294 (311)
.|...| +.+++.+.+++
T Consensus 378 ~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 378 QSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 344445 45566777765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-22 Score=165.62 Aligned_cols=287 Identities=12% Similarity=0.061 Sum_probs=235.6
Q ss_pred hhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~ 78 (311)
..+.+.|++++|+..|+++.. .+..+|..+..++...|++++|...|+++.+ ..|+ ...+..+..++. .
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~---~ 83 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA----LKMDFTAARLQRGHLLL---K 83 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH---H
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCCCcchHHHHHHHHHH---H
Confidence 467889999999999999843 3678999999999999999999999999988 4454 445555544333 3
Q ss_pred cCcchhHHHHHHHHhhccCC--chHHHHHHH------------HHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIV--LSVFMGTAL------------IDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISS 141 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~ 141 (311)
.|++++|...++++.+..+. .+...+..+ ...+...|++++|+..++++.. .+...+..+...
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 163 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 67799999999999987531 345555545 5889999999999999999843 367888999999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHH------------H
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYG------------C 208 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~------------~ 208 (311)
+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+. .|+ ...+. .
T Consensus 164 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 164 FIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999998763 447888999999999999999999999999864 332 22222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCCcc-----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEPDAS-----VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
+...+.+.|++++|.+.++++ ...|+.. .+..+...+...|++++|...++++.+..|+++.++..++.++.+.
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence 366789999999999999998 4445543 2445667899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHccC
Q 040965 283 ERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 283 g~~~~A~~~~~~m~~~~~ 300 (311)
|++++|...|++..+...
T Consensus 320 g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 320 EMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp TCHHHHHHHHHHHHTTCT
T ss_pred CCHHHHHHHHHHHHhcCC
Confidence 999999999999987653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-22 Score=173.25 Aligned_cols=288 Identities=11% Similarity=-0.010 Sum_probs=239.7
Q ss_pred hhhhhcCChHHHHHHHHHhc--cccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhc
Q 040965 3 DGYVKNGDMDSAILLFENML--KRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNE 79 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 79 (311)
..+.+.|++++|+..|+++. .|+..+|..+..++.+.|++++|+..++++.+ ..|+. ..+..+..++.. .
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~l~~~~~~---~ 86 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALE----LKPDYSKVLLRRASANEG---L 86 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHHH---T
T ss_pred HHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc----cChHHHHHHHHHHHHHHH---H
Confidence 46788999999999999994 47889999999999999999999999999988 44554 456555554443 6
Q ss_pred CcchhHHHHHHHHhhccCCc------------------------------------------------------------
Q 040965 80 GGLYLGKQVHGYILRNEIVL------------------------------------------------------------ 99 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~------------------------------------------------------------ 99 (311)
|++++|...|+++.+.+...
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 77999999999987765311
Q ss_pred ------------------hHHHHHHHHHHHhh---cCCHHHHHHHHHHccc----------------c-hHhhHHHHHHH
Q 040965 100 ------------------SVFMGTALIDLYGK---VGCLERAIRVFKSMVI----------------K-DVCTWNAMISS 141 (311)
Q Consensus 100 ------------------~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~----------------~-~~~~~~~l~~~ 141 (311)
+...+..+...+.. .|++++|+..|+++.. | +..++..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 13333334444443 8999999999998855 2 46788889999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
+...|++++|...++++.+.. |+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999998874 34788889999999999999999999999864 23356688999999999999999
Q ss_pred HHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 222 AKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 222 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.+..++..++.++.+.|++++|...++++.+..
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 99999998 3344 567788888899999999999999999999999998899999999999999999999999998765
Q ss_pred CC
Q 040965 300 IR 301 (311)
Q Consensus 300 ~~ 301 (311)
..
T Consensus 403 ~~ 404 (514)
T 2gw1_A 403 NK 404 (514)
T ss_dssp HT
T ss_pred hc
Confidence 44
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-21 Score=157.16 Aligned_cols=263 Identities=13% Similarity=0.040 Sum_probs=137.7
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...+..++..+...|++++|+++|+++.+.. +.+...+..+..++. ..|++++|...++++.+.. +.+..++
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~---~~~~~~~A~~~~~~~~~~~-~~~~~~~ 93 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---PFHASCLPVHIGTLV---ELNKANELFYLSHKLVDLY-PSNPVSW 93 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTTTHHHHHHHHH---HHTCHHHHHHHHHHHHHHC-TTSTHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCChhhHHHHHHHHH---HhhhHHHHHHHHHHHHHhC-cCCHHHH
Confidence 34444555555555566666666666655432 111222222222221 2444666666666555543 2234455
Q ss_pred HHHHHHHhhcC-CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 105 TALIDLYGKVG-CLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 105 ~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
..+...+...| ++++|...|+++... +...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 55555556665 566666666555221 34455555556666666666666666555542 12334444455555566
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CCCcchHHHHHHHHHhcC
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF----------EPDASVLGALLGACKIHG 249 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g 249 (311)
|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|
T Consensus 173 ~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 173 NNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp TCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 6666666666665542 1223445555555666666666666555554 10 122345555555555666
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++++|...++++.+..|++..++..++.++.+.|++++|...+++..+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 666666666666665555555566666666666666666666655544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-21 Score=167.31 Aligned_cols=296 Identities=13% Similarity=-0.024 Sum_probs=233.3
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCC------------------
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVR------------------ 60 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------------ 60 (311)
...|.+.|++++|+..|+++.+ | +..+|..++.++.+.|++++|...|+++.+.++...
T Consensus 46 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (514)
T 2gw1_A 46 SACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK 125 (514)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHH
Confidence 3578899999999999999843 3 678999999999999999999999999977541000
Q ss_pred ---------------------------------------------------------Cc-hHHHHHHHHHhhhhhhcCcc
Q 040965 61 ---------------------------------------------------------PN-EATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 61 ---------------------------------------------------------p~-~~~~~~ll~~~~~~~~~~~~ 82 (311)
|+ ...+......+....+.|++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (514)
T 2gw1_A 126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY 205 (514)
T ss_dssp HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence 00 11111111111111136779
Q ss_pred hhHHHHHHHHhh-----c--cC------CchHHHHHHHHHHHhhcCCHHHHHHHHHHcc--cchHhhHHHHHHHHHcCCC
Q 040965 83 YLGKQVHGYILR-----N--EI------VLSVFMGTALIDLYGKVGCLERAIRVFKSMV--IKDVCTWNAMISSLASNSR 147 (311)
Q Consensus 83 ~~a~~~~~~~~~-----~--~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 147 (311)
++|...++++.+ . .. +.+..++..+..++...|++++|...++++. .|+..++..+...+...|+
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~ 285 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRND 285 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCC
Confidence 999999999987 3 11 3346788889999999999999999999883 2347788888999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 040965 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 148 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
+++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|.+.++
T Consensus 286 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 362 (514)
T 2gw1_A 286 STEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFS 362 (514)
T ss_dssp CTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999988763 336678888999999999999999999999864 23345678888899999999999999999
Q ss_pred hC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh------HHHHHHHHHhc---cchhHHHHHHHHHHH
Q 040965 228 SM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG------RYVVLSNIHAG---LERWNRATDLRKAMV 296 (311)
Q Consensus 228 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~m~ 296 (311)
++ ...| +...+..+...+...|++++|...++++.+..|.+.. ++..++.++.. .|++++|...++++.
T Consensus 363 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 363 EAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 88 3334 5577888888899999999999999999988777644 88899999999 999999999999988
Q ss_pred HccC
Q 040965 297 EAGI 300 (311)
Q Consensus 297 ~~~~ 300 (311)
+...
T Consensus 443 ~~~~ 446 (514)
T 2gw1_A 443 KLDP 446 (514)
T ss_dssp HHCT
T ss_pred HhCc
Confidence 7643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-21 Score=159.48 Aligned_cols=275 Identities=12% Similarity=0.008 Sum_probs=226.6
Q ss_pred hhhhhcCChHHHHHHHHHhccc---cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCC-chHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLKR---DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP-NEATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~ 78 (311)
..+...|++++|..+|+++... +...+..++.++...|++++|..+++++.+. .| +...+..+...+..
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~--- 102 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL----YPSNPVSWFAVGCYYLM--- 102 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTSTHHHHHHHHHHHH---
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHH---
Confidence 4577889999999999998543 4557777889999999999999999999884 34 34555555443332
Q ss_pred cC-cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 79 EG-GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 79 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
.| ++++|.+.+++..+.. +.+...+..+..++...|++++|+..++++... +...+..+...+...|++++|.+.
T Consensus 103 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (330)
T 3hym_B 103 VGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF 181 (330)
T ss_dssp SCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 56 7999999999999875 345778899999999999999999999998432 457788899999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCC-------CccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 040965 155 FDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFE-------VVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 155 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
+++..+.. +.+...+..+...+...|++++|...++++.+... .+.+..++..+..+|...|++++|.+.++
T Consensus 182 ~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 182 FSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99998763 44678899999999999999999999999876411 13345688999999999999999999999
Q ss_pred hC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH-hccchhH
Q 040965 228 SM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH-AGLERWN 286 (311)
Q Consensus 228 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 286 (311)
+. ...| +...+..+...+...|++++|...++++.+..|++..++..+..++ ...|+.+
T Consensus 261 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 261 QALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 98 3334 5678888899999999999999999999999999998999999988 4556543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-22 Score=162.91 Aligned_cols=282 Identities=12% Similarity=-0.018 Sum_probs=215.3
Q ss_pred hhhcCChHHHHH-HHHHhcc--c-----cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhh
Q 040965 5 YVKNGDMDSAIL-LFENMLK--R-----DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGL 76 (311)
Q Consensus 5 ~~~~g~~~~A~~-~~~~~~~--~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 76 (311)
+.-.|++++|.. .|++... | +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++.
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~-- 109 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD---PKHMEAWQYLGTTQA-- 109 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH--
Confidence 445678888888 8886632 1 24568889999999999999999999999843 224445555554333
Q ss_pred hhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHH---------------H
Q 040965 77 VNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNA---------------M 138 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------l 138 (311)
..|++++|...++++.+.. +.+..++..+..+|...|++++|...++++... +...+.. .
T Consensus 110 -~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 110 -ENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp -HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CT
T ss_pred -HCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHH
Confidence 3677999999999999876 446788899999999999999999999988432 2222211 1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
+..+...|++++|...++++.+..... +..++..+...+...|++++|...++++++. .+.+..++..++.++...|
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcC
Confidence 333348899999999999998864221 5788999999999999999999999999864 2335678899999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-----------hhHHHHHHHHHhccch
Q 040965 218 LLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH-----------CGRYVVLSNIHAGLER 284 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~ 284 (311)
++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|++ ..+|..++.+|...|+
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999998 4344 45778888899999999999999999999888776 7789999999999999
Q ss_pred hHHHHHHHHHH
Q 040965 285 WNRATDLRKAM 295 (311)
Q Consensus 285 ~~~A~~~~~~m 295 (311)
+++|..++++-
T Consensus 346 ~~~A~~~~~~~ 356 (368)
T 1fch_A 346 SDAYGAADARD 356 (368)
T ss_dssp GGGHHHHHTTC
T ss_pred hHhHHHhHHHH
Confidence 99999888643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-20 Score=151.57 Aligned_cols=275 Identities=12% Similarity=0.057 Sum_probs=219.5
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCC---chH-HHHHHHHH---
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP---NEA-TYVSVLSS--- 72 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p---~~~-~~~~ll~~--- 72 (311)
..+.+.|++++|...|+++.. | +...|..+...+...|++++|...|+++.+ ..| +.. .+..+...
T Consensus 45 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 45 TVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK----SNPSEQEEKEAESQLVKADEM 120 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT----SCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh----cCCcccChHHHHHHHHHHHHH
Confidence 467889999999999999843 3 678999999999999999999999999988 556 433 33222100
Q ss_pred ------hhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHH
Q 040965 73 ------CAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLA 143 (311)
Q Consensus 73 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 143 (311)
...+...|++++|.+.++++.+.. +.+..++..+..++...|++++|...++++.. .+..++..+...+.
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 112334788999999999999875 44678889999999999999999999998843 36788999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHH------------HHHHHHHccccHHHHHHHHHHhhccCCCccch--hhHHHH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFV------------AVLTACARAQLVELGLELFHSMLGKFEVVPIM--EHYGCV 209 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l 209 (311)
..|++++|...+++..+.. +.+...+. .+...+.+.|++++|...++++.+.....+.. ..+..+
T Consensus 200 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI 278 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 9999999999999998763 22333332 23667889999999999999998652221211 335567
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
..++...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|++..++..+..+....+
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 88999999999999999998 4345 66788888899999999999999999999999999888888877766544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-21 Score=164.34 Aligned_cols=287 Identities=10% Similarity=0.060 Sum_probs=224.8
Q ss_pred hhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~ 78 (311)
..+.+.|++++|+..|+++.. .++.+|..+..+|.+.|++++|++.|+++.+ ..|+ ...+..+..++..
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~~--- 105 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALE----IKPDHSKALLRRASANES--- 105 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHHHH---
Confidence 467889999999999999843 3778999999999999999999999999988 4455 4445444443333
Q ss_pred cCcchhHHHHHHHHhhccCCchH-------------------------------------H-------------------
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSV-------------------------------------F------------------- 102 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~-------------------------------------~------------------- 102 (311)
.|++++|...++.+ .....+.. .
T Consensus 106 ~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 106 LGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred cCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 66699999888633 21111000 0
Q ss_pred -----------HHHHHHHHHhh--------cCCHHHHHHHHHHcccch----------HhhHHHHHHHHHcCCCHHHHHH
Q 040965 103 -----------MGTALIDLYGK--------VGCLERAIRVFKSMVIKD----------VCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 103 -----------~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
....+...+.. .|++++|..+++++...+ ..++..+...+...|++++|..
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~ 264 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQV 264 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 11222222221 247889999998884432 2357777788999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
.++++.+. .|+...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|.+.++++ ...
T Consensus 265 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 265 LLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 99999986 456788889999999999999999999999864 2335678999999999999999999999998 334
Q ss_pred C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 233 P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 233 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
| +...+..+...+...|++++|...++++.+..|++..++..++.++...|++++|...++++.+....
T Consensus 341 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 4 45788888899999999999999999999999999999999999999999999999999999886643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.2e-20 Score=146.49 Aligned_cols=271 Identities=11% Similarity=0.028 Sum_probs=212.4
Q ss_pred hhhhhcCChHHHHHHHHHhcccc----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLKRD----VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 78 (311)
+-....|+++.|+..++.....+ ......+.++|...|+++.|+..++.. -+|+..++..+...+. .
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~~~~a~~~la~~~~---~ 77 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------SAPELQAVRMFAEYLA---S 77 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT------SCHHHHHHHHHHHHHH---C
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc------CChhHHHHHHHHHHHc---C
Confidence 44567899999999998874432 345567889999999999999866441 3566666666665433 3
Q ss_pred cCcchhHHHHHHHHhhccCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
.++.++|.+.++++...+..| +...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.+++
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 667999999999998876434 567777888999999999999999998 56788999999999999999999999999
Q ss_pred HHHcCCCCcHHH---HHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 040965 158 MKEKGLRANEIT---FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP 233 (311)
Q Consensus 158 m~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 233 (311)
+.+.. |+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.|+++ ...|
T Consensus 156 ~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 98874 44321 122334455669999999999999975 4557788999999999999999999999997 4455
Q ss_pred -CcchHHHHHHHHHhcCChhH-HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 234 -DASVLGALLGACKIHGAVDL-CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 234 -~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
+..++..++..+...|+.++ +.++++++.+.+|+++. +.+...+.+.++++..-|
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHHHc
Confidence 55788889989999999976 67899999999999973 344556666666665443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-19 Score=157.59 Aligned_cols=218 Identities=11% Similarity=0.006 Sum_probs=163.9
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. |+..++..+...+...|++++|...++++.. .+..+|..+...+...|++++|.+.+
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 456777777777777654 3366677777788888888888888877732 25677888888888888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC--
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE-- 232 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-- 232 (311)
+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 8887763 224567778888888888888888888888764 2334567788888888888888888888876 111
Q ss_pred -CC----cchHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 233 -PD----ASVLGALLGACKIH----------GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 233 -p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++ ...+......+... |++++|...++++.+..|++..++..++.+|.+.|++++|...|++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11 11233344556666 8999999999999999999888999999999999999999999998887
Q ss_pred ccCC
Q 040965 298 AGIR 301 (311)
Q Consensus 298 ~~~~ 301 (311)
....
T Consensus 491 ~~~~ 494 (537)
T 3fp2_A 491 LART 494 (537)
T ss_dssp HC--
T ss_pred hCCC
Confidence 6543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=156.03 Aligned_cols=261 Identities=11% Similarity=-0.046 Sum_probs=207.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++.. .|++++|...++++.+.. +.+..++
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD---PGDAEAWQFLGITQAE---NENEQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 34458889999999999999999999998843 2345556666554443 677999999999999875 4467889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhh----------HHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CcHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCT----------WNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITF 170 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~----------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~ 170 (311)
..+..+|...|++++|+..|+++... +... +..+...+...|++++|.+.++++.+.... ++..++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999999999998443 2222 334578899999999999999999887422 167889
Q ss_pred HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhc
Q 040965 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIH 248 (311)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~ 248 (311)
..+...+...|++++|...|+++++. .+.+..++..+..+|...|++++|.+.|+++ ...|+ ..++..+...|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence 99999999999999999999999864 2345678999999999999999999999998 44454 67788888999999
Q ss_pred CChhHHHHHHHHHHhcCCC------------chhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 249 GAVDLCHEVGRRLLELQPK------------HCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
|++++|...++++++..|+ +..+|..+..++...|+.+.+..+.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999987766 246788999999999999988887754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-21 Score=157.16 Aligned_cols=261 Identities=12% Similarity=0.008 Sum_probs=199.2
Q ss_pred HHHhcCCHhHHHH-HHHHhhcCCCCCCC--chHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040965 35 GFVRNGCFGEAIC-VFKNMMGNVNLVRP--NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111 (311)
Q Consensus 35 ~~~~~g~~~~A~~-~~~~~~~~~~~~~p--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (311)
++.-.|++++|++ .|++..+..+ ..| +...+..+...+. ..|++++|...++++.+.. +.+..++..+..+|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~---~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEE-ENPLRDHPQPFEEGLRRL---QEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQ 108 (368)
T ss_dssp ------------CHHHHCCCCCCS-SCTTTTCSSHHHHHHHHH---HTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCC-CCcccchHHHHHHHHHHH---HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3445689999999 9998776431 112 2233444443332 3777999999999999875 44678889999999
Q ss_pred hhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHH---------------H
Q 040965 112 GKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVA---------------V 173 (311)
Q Consensus 112 ~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~---------------l 173 (311)
.+.|++++|+..|+++.. .+..++..+...+...|++++|.+.++++.+.... +...+.. .
T Consensus 109 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 109 AENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CT
T ss_pred HHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHH
Confidence 999999999999998843 36788999999999999999999999999886422 2222211 2
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCh
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAV 251 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 251 (311)
+..+...|++++|...++++.+.....++..++..+...|...|++++|.+.++++ ...| +...+..+...+...|++
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCH
Confidence 33444899999999999999865222224778999999999999999999999998 3345 467888899999999999
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 252 DLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
++|...++++.+..|++..++..++.+|.+.|++++|...+++..+....
T Consensus 268 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.2e-20 Score=148.16 Aligned_cols=262 Identities=9% Similarity=-0.045 Sum_probs=211.2
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
+...|..+...+...|++++|..+|+++.+.. +.+...+..+..++. ..|++++|.+.++++.+.. +.+..++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~-~~~~~~~ 92 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---PEREEAWRSLGLTQA---ENEKDGLAIIALNHARMLD-PKDIAVH 92 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcC-cCCHHHH
Confidence 34567778889999999999999999998743 224445555444333 3677999999999998875 4467788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHH--------------HH-HHHcCCCHHHHHHHHHHHHHcCCCCc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAM--------------IS-SLASNSREKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~~~~~~ 166 (311)
..+..+|...|++++|...++++... +...+..+ .. .+...|++++|.+.++++.+.. +.+
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 171 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PND 171 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCC
Confidence 88999999999999999999988433 23333333 33 3778899999999999998874 347
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHH
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGA 244 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 244 (311)
...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|.+.++++ ...| +...+..+...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 788999999999999999999999999864 2335678899999999999999999999998 3344 56778888899
Q ss_pred HHhcCChhHHHHHHHHHHhcCCC------------chhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPK------------HCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
+...|++++|...++++.+..|. +..++..++.++.+.|++++|..++++..
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999999999998888 77899999999999999999999987544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-19 Score=143.04 Aligned_cols=249 Identities=9% Similarity=0.021 Sum_probs=199.7
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH--HHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHH
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEA--TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL 110 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (311)
++-....|++..|+..++.... ..|+.. ....+..++.. .|+++.|...++.. -+|+..++..+...
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~----~~p~~~~e~~~~l~r~yi~---~g~~~~al~~~~~~----~~~~~~a~~~la~~ 74 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP----SSPERDVERDVFLYRAYLA---QRKYGVVLDEIKPS----SAPELQAVRMFAEY 74 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC----CSHHHHHHHHHHHHHHHHH---TTCHHHHHHHSCTT----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc----CCchhhHHHHHHHHHHHHH---CCCHHHHHHHhccc----CChhHHHHHHHHHH
Confidence 4556788999999999988765 445542 32334443333 66688888766542 36678889999999
Q ss_pred HhhcCCHHHHHHHHHHcc----cc-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 111 YGKVGCLERAIRVFKSMV----IK-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
+...|+.++|++.++++. .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~ 148 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDL 148 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHH
Confidence 999999999999999874 24 566778888999999999999999987 4577889999999999999999
Q ss_pred HHHHHHHhhccCCCccchhhH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 040965 186 GLELFHSMLGKFEVVPIMEHY---GCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRR 260 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 260 (311)
|...|+++.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...++.+..++...|++++|...+++
T Consensus 149 A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 149 ARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999865 4553211 22334445569999999999999 3345667888899999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHHhccchhHH-HHHHHHHHHHccCC
Q 040965 261 LLELQPKHCGRYVVLSNIHAGLERWNR-ATDLRKAMVEAGIR 301 (311)
Q Consensus 261 ~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~~~ 301 (311)
+++.+|+++.++..++..+...|+.++ +.++++++.+.++.
T Consensus 226 al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~ 267 (291)
T 3mkr_A 226 ALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS 267 (291)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999976 57899998876543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-20 Score=151.89 Aligned_cols=220 Identities=13% Similarity=0.014 Sum_probs=183.6
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
+.|++++|...++++++.. +.+..++..+..+|.+.|++++|+..|+++.. .+..+|..+..+|...|++++|.+.
T Consensus 77 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 77 KEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHH
Confidence 3777999999999999875 44688899999999999999999999999843 3578899999999999999999999
Q ss_pred HHHHHHcCCCCc-----------HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH
Q 040965 155 FDEMKEKGLRAN-----------EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK 223 (311)
Q Consensus 155 ~~~m~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 223 (311)
++++.+.. |+ ...+..+...+...|++++|...++++.+.....++..++..+...|...|++++|.
T Consensus 156 ~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~ 233 (365)
T 4eqf_A 156 LKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAI 233 (365)
T ss_dssp HHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99998752 32 223344578899999999999999999875222225778999999999999999999
Q ss_pred HHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 224 EFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 224 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+.++++ ...| +..++..+...|...|++++|...++++++..|++..++..++.+|.+.|++++|...|++..+...
T Consensus 234 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 312 (365)
T 4eqf_A 234 DAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR 312 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 999998 3344 5688899999999999999999999999999999999999999999999999999999999987653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=160.25 Aligned_cols=252 Identities=12% Similarity=0.107 Sum_probs=120.3
Q ss_pred hhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH
Q 040965 6 VKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85 (311)
Q Consensus 6 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a 85 (311)
-+.|++++|.++++++..| .+|..++.++.+.|++++|++.|.+. +|..+|..++.++.. .|++++|
T Consensus 14 ~~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~---~g~~EeA 80 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANT---SGNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHh---CCCHHHH
Confidence 4678899999999999554 59999999999999999999999653 466688888886655 6669999
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCC
Q 040965 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRA 165 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 165 (311)
+..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|.+++|..+|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9988777764 4557788999999999999999998885 477789999999999999999999999976
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGAC 245 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~ 245 (311)
..|..++.++.+.|+++.|.+.++++. ++.+|..++.+|...|+++.|......+...|+. ...++..|
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~--l~~lv~~Y 217 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE--LEELINYY 217 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH--HHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh--HHHHHHHH
Confidence 379999999999999999999999982 5678999999999999999998877776555544 44688899
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc--chhHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL--ERWNRATDLRK 293 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 293 (311)
.+.|.+++|..+++..+..++.....|..|..+|++- ++..+..+.|.
T Consensus 218 ek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~ 267 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 267 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS
T ss_pred HHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999999999989999888888754 55555555553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.8e-19 Score=144.23 Aligned_cols=253 Identities=12% Similarity=0.022 Sum_probs=202.7
Q ss_pred hhhhhcCChHHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCC-chHHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLK---RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRP-NEATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~ 78 (311)
..+.+.|++++|..+|+++.. .+..+|..+..++...|++++|.+.++++.+. .| +...+..+...+. .
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~la~~~~---~ 101 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHAALAVSHT---N 101 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHH---H
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHHHHHHHHHH---H
Confidence 457789999999999999843 36788999999999999999999999999884 44 4455555554433 3
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHH--------------HH-HHhhcCCHHHHHHHHHHccc---chHhhHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTAL--------------ID-LYGKVGCLERAIRVFKSMVI---KDVCTWNAMIS 140 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~ 140 (311)
.|++++|.+.++++.+.... +...+..+ .. .+...|++++|...++++.. .+...+..+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 180 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV 180 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 67799999999999887422 33333333 33 47888999999999998843 36788999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 040965 141 SLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (311)
.+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.+. .+.+..++..+..+|...|+++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999998873 346788999999999999999999999999864 2335678899999999999999
Q ss_pred HHHHHHHhC-CCCCC-------------cchHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 221 EAKEFMRSM-PFEPD-------------ASVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 221 ~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
+|.+.++++ ...|+ ...+..+...+...|++++|..++++.++..|
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 999999988 33343 56788888999999999999999987765433
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-18 Score=131.22 Aligned_cols=196 Identities=12% Similarity=-0.011 Sum_probs=157.6
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
+++...+..+...+.+.|++++|+..|++.... +...+..+..++.+.|++++|+..+++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 556778888999999999999999999988433 67888899999999999999999999998873 33677888899
Q ss_pred HHHHcc-----------ccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHH
Q 040965 175 TACARA-----------QLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGAL 241 (311)
Q Consensus 175 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l 241 (311)
.++... |++++|...+++.++. .| +...+..+..+|...|++++|.+.|++. ....+...+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 999999 9999999999999864 44 4678889999999999999999999998 222677888889
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
...+...|++++|...++++++..|+++.++..++.++.+.|++++|...+++...
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999987653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=164.26 Aligned_cols=148 Identities=14% Similarity=0.057 Sum_probs=122.5
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHc-------ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSM-------VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFV 171 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 171 (311)
.-..+||+||++|++.|++++|.++|++| ..||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 34578999999999999999999999876 35799999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccH-HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCC------cchHHHHHHH
Q 040965 172 AVLTACARAQLV-ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPD------ASVLGALLGA 244 (311)
Q Consensus 172 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~------~~~~~~l~~~ 244 (311)
++|.++++.|+. +.|.++|++|.++ |+.||..+|+.++..+.+.+-++.+.++...+ .|+ ..+...|...
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f--~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF--SLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC--CCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc--CCCCCCcccccchHHHHHH
Confidence 999999999984 7899999999988 99999999999998776654444444443333 332 3444455555
Q ss_pred HHhcC
Q 040965 245 CKIHG 249 (311)
Q Consensus 245 ~~~~g 249 (311)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 65544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=141.01 Aligned_cols=299 Identities=9% Similarity=-0.043 Sum_probs=198.6
Q ss_pred hhhhhcCChHHHHHHHHHhcc-----------ccHHHHHHHHHHHHhc--CCHhHHHHHHHHhhcCCCCCCCchHH-HHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK-----------RDVVSWTSIINGFVRN--GCFGEAICVFKNMMGNVNLVRPNEAT-YVS 68 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ 68 (311)
.+|...|++++|...+++... ....++..+..++... +++++|++.|++..+ +.|+... +..
T Consensus 102 ~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~----~~p~~~~~~~~ 177 (472)
T 4g1t_A 102 WVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALE----KKPKNPEFTSG 177 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH----HSTTCHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH----hCCCCHHHHHH
Confidence 357789999999999988732 1345777776666654 579999999999988 5566543 333
Q ss_pred HHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHh----hcCCHHHHHHHHHHcc---cchHhhHHHHHHH
Q 040965 69 VLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG----KVGCLERAIRVFKSMV---IKDVCTWNAMISS 141 (311)
Q Consensus 69 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~ 141 (311)
+..++..+...++.++|++.+++.++.. +.+..++..+...+. ..|++++|.+.+++.. ..+..++..+...
T Consensus 178 ~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 178 LAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256 (472)
T ss_dssp HHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 4434445555677899999999988875 334556655555444 3467889999998873 3367788899999
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc-------------------ccHHHHHHHHHHhhccCCCccc
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA-------------------QLVELGLELFHSMLGKFEVVPI 202 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~ 202 (311)
|...|++++|.+.+++..+.. +-+..++..+..+|... +..+.|...+++..+. .+.+
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~ 333 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNL 333 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTT
T ss_pred HHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCch
Confidence 999999999999999998863 33566676666555432 3467888888888753 2334
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcch----HHHHHH-HHHhcCChhHHHHHHHHHHhc------------
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASV----LGALLG-ACKIHGAVDLCHEVGRRLLEL------------ 264 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~----~~~l~~-~~~~~g~~~~a~~~~~~~~~~------------ 264 (311)
..++..+...|...|++++|.+.|++. ...|+... +..+.. .....|++++|...|++++++
T Consensus 334 ~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~ 413 (472)
T 4g1t_A 334 FRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413 (472)
T ss_dssp CCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred hhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 567889999999999999999999987 44454422 222322 234678999999888887654
Q ss_pred ------------CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCCCCccccc
Q 040965 265 ------------QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKIPAYSLI 309 (311)
Q Consensus 265 ------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~ 309 (311)
+|+++.+|..|+.+|...|++++|.+.|++.++.|...+...+|+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 466677899999999999999999999999999888777787776
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.2e-17 Score=128.20 Aligned_cols=208 Identities=10% Similarity=-0.023 Sum_probs=139.8
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--h--------HhhHHHHHHHHHcCCCH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK--D--------VCTWNAMISSLASNSRE 148 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--------~~~~~~l~~~~~~~~~~ 148 (311)
.|++++|...+++..+.. .+..++..+..+|...|++++|+..++++... + ..+|..+...+...|++
T Consensus 18 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 444555555555555544 44555566666666666666666666665321 1 45666777777777777
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040965 149 KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRS 228 (311)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (311)
++|.+.+++..+. .|+. ..+...|++++|...++++... .+.+...+..+...+...|++++|.+.+++
T Consensus 96 ~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 164 (258)
T 3uq3_A 96 KKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164 (258)
T ss_dssp HHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 7777777777664 3332 3455667777787777777653 222445667777777778888888887777
Q ss_pred C-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 229 M-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 229 ~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
+ ...| +...+..+...+...|++++|...++++++..|+++.++..++.++...|++++|...+++..+..
T Consensus 165 a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 7 2233 456667777777788888888888888888778777778888888888888888888887776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-17 Score=129.24 Aligned_cols=238 Identities=9% Similarity=-0.057 Sum_probs=191.0
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCc--h--
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVL--S-- 100 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~-- 100 (311)
....|..+...+...|++++|+..|+++.+.. ++...+..+..++.. .|++++|...+++..+..... +
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~---~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYE---KGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHH---cccHHHHHHHHHHHHHhCcccccchH
Confidence 35678889999999999999999999998743 556666666654443 667999999999988764221 1
Q ss_pred --HHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 101 --VFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 101 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
..++..+..+|...|++++|...|+++...+.. ...+...|++++|...++++.... +.+...+..+...+.
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH
Confidence 578889999999999999999999998543222 245667789999999999988762 225678888899999
Q ss_pred ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHE 256 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 256 (311)
..|++++|...++++.+. .+.+..++..+..+|...|++++|.+.+++. ...| +...+..+...+...|++++|..
T Consensus 151 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999864 2335678899999999999999999999998 3344 46778888899999999999999
Q ss_pred HHHHHHhcC------CCchhHHHHHHH
Q 040965 257 VGRRLLELQ------PKHCGRYVVLSN 277 (311)
Q Consensus 257 ~~~~~~~~~------~~~~~~~~~l~~ 277 (311)
.++++.+.. |.+...+..+..
T Consensus 229 ~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 229 TLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999999988 777766665544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-17 Score=129.95 Aligned_cols=243 Identities=10% Similarity=-0.096 Sum_probs=166.9
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCCC-chHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC
Q 040965 38 RNGCFGEAICVFKNMMGNVNLVRP-NEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC 116 (311)
Q Consensus 38 ~~g~~~~A~~~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 116 (311)
..|++++|++.|+++.+.....+| +...+..+..++ ...|++++|...++++.+.. +.+..++..+..+|...|+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLY---DSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHH---HHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 346677777777777664310111 122333333222 22556777777777777654 3356677778888888888
Q ss_pred HHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 117 LERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 117 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+++|...|+++.. .+..++..+...+...|++++|.+.++++.+. .|+.......+..+...|++++|...+++.
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888888743 25677888888888999999999999988876 344334444445557779999999999887
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
... .+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...+...|++++|...++++.+..|+
T Consensus 171 ~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 171 FEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred Hhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 764 23333333 4677777888888999888887 33332 467778888899999999999999999999887
Q ss_pred chhHHHHHHHHHhccchhHHHHHHH
Q 040965 268 HCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 268 ~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
+...+ ..++...|++++|.+.+
T Consensus 248 ~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHH---HHHHHHHHHHHHC----
T ss_pred hHHHH---HHHHHHHHHHHhhHHHH
Confidence 64333 55677888999988776
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-19 Score=159.74 Aligned_cols=116 Identities=13% Similarity=0.076 Sum_probs=107.7
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHH---HcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMK---EKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG 207 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~---~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 207 (311)
...+|+++|++|++.|++++|.++|++|. ..|+.||..|||+||.+|++.|++++|.++|++|.+. |+.||..||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHH
Confidence 45689999999999999999999998876 4589999999999999999999999999999999988 9999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHhC---CCCCCcchHHHHHHHHHh
Q 040965 208 CVVDLLGRAGL-LSEAKEFMRSM---PFEPDASVLGALLGACKI 247 (311)
Q Consensus 208 ~l~~~~~~~g~-~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~ 247 (311)
+||.++++.|+ .++|.++|++| |+.||..+|++++.++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 99999999998 47899999999 999999999999876544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-19 Score=143.72 Aligned_cols=259 Identities=11% Similarity=0.054 Sum_probs=133.3
Q ss_pred ChhhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 1 MIDGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 1 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
|..++.+.|++++|++.|.+. +|...|..++.++...|++++|+++++...+. .++..+.+.++.++..+ |
T Consensus 38 La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~----~~~~~i~~~Li~~Y~Kl---g 108 (449)
T 1b89_A 38 LAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETELIFALAKT---N 108 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CccchhHHHHHHHHHHh---C
Confidence 456889999999999999764 67779999999999999999999988877663 45567788888877664 4
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
+++++.++++ .|+..+|+.++..|...|++++|...|..+ ..|..++.++.+.|++++|.+.++++
T Consensus 109 ~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-- 174 (449)
T 1b89_A 109 RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA-- 174 (449)
T ss_dssp CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHHHHHHhccHHHHHHHHHHc--
Confidence 5888877774 367789999999999999999999999977 58999999999999999999999987
Q ss_pred cCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchH
Q 040965 161 KGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVL 238 (311)
Q Consensus 161 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 238 (311)
.+..+|..++.+|...|+++.|......+ ...|+ ....++..|.+.|++++|..+++.. +..+ ....|
T Consensus 175 ----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----~~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~f 244 (449)
T 1b89_A 175 ----NSTRTWKEVCFACVDGKEFRLAQMCGLHI----VVHAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMF 244 (449)
T ss_dssp ----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT----TTCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHH
T ss_pred ----CCchhHHHHHHHHHHcCcHHHHHHHHHHH----HhCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHH
Confidence 27899999999999999999996655543 23344 3557899999999999999999987 5554 34566
Q ss_pred HHHHHHHHh--cCChhHHHHHHHHHHhcCC-----CchhHHHHHHHHHhccchhHHHHHHH
Q 040965 239 GALLGACKI--HGAVDLCHEVGRRLLELQP-----KHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 239 ~~l~~~~~~--~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
.-|...|++ .++..+..+.|..-+...| .....|..+...|...++++.|....
T Consensus 245 tel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 245 TELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 666666654 3455555555554433444 45568999999999999999887743
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-17 Score=126.25 Aligned_cols=199 Identities=9% Similarity=-0.064 Sum_probs=157.6
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 177 (311)
...+..+...+...|++++|...|+++.. .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 56777788888888888888888887743 256778888888888888888888888887763 33667788888888
Q ss_pred HccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 254 (311)
...|++++|..+++++.+. +..| +...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888899998888888762 2344 4567777888888888999888888887 3334 456777778888888899999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 255 HEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
...++++.+..|++...+..++..+...|++++|.++++++.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 99999888888888878888888888889999999888888876543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.9e-17 Score=123.01 Aligned_cols=200 Identities=10% Similarity=-0.022 Sum_probs=151.4
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
.+..++..+...+...|++++|.+.++++.. .+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456677778888888888888888887633 246677778888888888888888888877763 335677777888
Q ss_pred HHHcc-ccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCh
Q 040965 176 ACARA-QLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAV 251 (311)
Q Consensus 176 ~~~~~-~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 251 (311)
.+... |++++|...++++.+. +..| +...+..+..++...|++++|.+.++++ ...| +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 8888888888888762 2333 3566777788888888888888888877 3334 456677777788888888
Q ss_pred hHHHHHHHHHHhcCC-CchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 252 DLCHEVGRRLLELQP-KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
++|...++++.+..| .+...+..+...+...|+.++|..+++.+.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 888888888888888 7777777777788888888888888888776543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.4e-17 Score=127.38 Aligned_cols=245 Identities=12% Similarity=-0.019 Sum_probs=149.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCch--HHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLS--VFMG 104 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 104 (311)
.+......+...|++++|+..|+++.+. .|+. ..+..+..++. ..|++++|...+++..+.+..++ ...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~l~~~~~---~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 77 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK----KYNSPYIYNRRAVCYY---ELAKYDLAQKDIETYFSKVNATKAKSADF 77 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT----TCCCSTTHHHHHHHHH---HTTCHHHHHHHHHHHHTTSCTTTCCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHH---HHhhHHHHHHHHHHHHhccCchhHHHHHH
Confidence 3445666777777777777777777763 3332 24444443322 25557777777777776331121 2336
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
..+..+|...|++++|+..|++... .+..+|..+...|...|++++|.+.+++..+.. +.+...+..+...+...+
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 6677777777777777777777633 245667777777777777777777777766542 224555555552333345
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCCc------chHHHHHHHHHhc
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL---LSEAKEFMRSM----PFEPDA------SVLGALLGACKIH 248 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~~------~~~~~l~~~~~~~ 248 (311)
++++|...|+++.+. .+.+...+..+..++...|+ +++|...+++. ...|+. ..|..+...|...
T Consensus 157 ~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 157 EYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp CHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence 777777777777653 12234556666666666666 66666666555 112332 3556666777778
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
|++++|...++++.+.+|+++.+...+.......
T Consensus 235 ~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 235 RDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 8888888888888888888776666665554433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=8.5e-17 Score=124.75 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=81.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
.+..+...+...|++++|...|+++.. .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence 333444444444555555444444421 133444444444445555555555555444432 1234444444444455
Q ss_pred cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHH
Q 040965 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 257 (311)
.|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...
T Consensus 104 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred hccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 55555555555544432 1122334444444455555555555555444 1112 233444444444555555555555
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 258 GRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
++++.+..|.+..++..++.+|...|++++|...++++.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 55555555544444555555555555555555555554443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.4e-15 Score=127.59 Aligned_cols=289 Identities=11% Similarity=0.056 Sum_probs=198.5
Q ss_pred hhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHh--------
Q 040965 5 YVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSC-------- 73 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~-------- 73 (311)
+.+.|++++|..+|+++.. | +...|..++..+.+.|++++|..+|+++.+ ..|+...|...+...
T Consensus 22 ~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~----~~p~~~lw~~~~~~~~~~~~~~~ 97 (530)
T 2ooe_A 22 EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM----KVLHIDLWKCYLSYVRETKGKLP 97 (530)
T ss_dssp HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT----TCCCHHHHHHHHHHHHHHTTTST
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCChHHHHHHHHHHHHHccchh
Confidence 3568999999999999954 3 677899999999999999999999999987 446655444333210
Q ss_pred ------------------------------hhhh----------hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH--
Q 040965 74 ------------------------------AGLV----------NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY-- 111 (311)
Q Consensus 74 ------------------------------~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 111 (311)
..+. ..|+++.|..+|++.++....+....|.......
T Consensus 98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 0000 0345667777777776631111112222111100
Q ss_pred -----------hhcCCHH------------------------------------------------------------HH
Q 040965 112 -----------GKVGCLE------------------------------------------------------------RA 120 (311)
Q Consensus 112 -----------~~~g~~~------------------------------------------------------------~A 120 (311)
.+.+++. ++
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 0111122 23
Q ss_pred HHHHHHccc---chHhhHHHHHHHHHc-------CCCHH-------HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccH
Q 040965 121 IRVFKSMVI---KDVCTWNAMISSLAS-------NSREK-------EALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183 (311)
Q Consensus 121 ~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (311)
..+|+++.. .+...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..+.+.|++
T Consensus 258 ~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 258 MFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCH
Confidence 333443322 134556566666654 68876 8888888877521233578888888888999999
Q ss_pred HHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHH-HHhcCChhHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGA-CKIHGAVDLCHEVG 258 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~~~ 258 (311)
++|..+|+++++. .|+ ...|..++..+.+.|++++|.++|++. ...|+. ..+...... +...|+.++|..+|
T Consensus 338 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 338 EKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 9999999999864 443 247888888888899999999999988 444432 233322222 33689999999999
Q ss_pred HHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 259 RRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+++++..|+++..+..++..+.+.|+.++|..+|++....+.
T Consensus 415 e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 415 ELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999988754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-16 Score=131.12 Aligned_cols=266 Identities=12% Similarity=0.038 Sum_probs=165.8
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-----HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-----ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN---- 95 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---- 95 (311)
....+......+...|++++|...|+++.+. .|+. ..+..+...+. ..|++++|...+++..+.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~ 80 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTI 80 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHHHHhc
Confidence 3445566677777777777777777777763 2332 22333332222 255677777777766543
Q ss_pred cCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCC------------------
Q 040965 96 EIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSR------------------ 147 (311)
Q Consensus 96 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~------------------ 147 (311)
+..| ...++..+..+|...|++++|...+++.... ...++..+...|...|+
T Consensus 81 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 81 GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 1112 2456667777777778888887777766322 13366677777777777
Q ss_pred --HHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhc
Q 040965 148 --EKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRA 216 (311)
Q Consensus 148 --~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 216 (311)
+++|.+.+++..+. +..| ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 77777777765432 1111 2345666777777778888888777776643111111 23566777777778
Q ss_pred CCHHHHHHHHHhC-CC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHHHHHHHHHhcc
Q 040965 217 GLLSEAKEFMRSM-PF---EPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRYVVLSNIHAGL 282 (311)
Q Consensus 217 g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 282 (311)
|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|...
T Consensus 241 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 320 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 8888887777765 11 111 345566666777788888888888777764322 144666777777788
Q ss_pred chhHHHHHHHHHHHH
Q 040965 283 ERWNRATDLRKAMVE 297 (311)
Q Consensus 283 g~~~~A~~~~~~m~~ 297 (311)
|++++|...+++..+
T Consensus 321 g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 321 GNHDQAMHFAEKHLE 335 (406)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888877777654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.9e-17 Score=134.36 Aligned_cols=265 Identities=11% Similarity=0.040 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-----HHHHHHHHhhhhhhcCcchhHHHHHHHHhhcc----
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-----TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE---- 96 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~---- 96 (311)
...+..+...+...|++++|+..|+++.+. .|+.. .+..+...+. ..|++++|...+++.++..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~~~ 120 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA----GTEDLRTLSAIYSQLGNAYF---YLGDYNKAMQYHKHDLTLAKSMN 120 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh----cccChhHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHcc
Confidence 345667788899999999999999999884 34432 3434433332 3677999999999887641
Q ss_pred -CCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCC-----------------HH
Q 040965 97 -IVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSR-----------------EK 149 (311)
Q Consensus 97 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~ 149 (311)
.+....++..+...|...|++++|...++++... ...++..+...|...|+ ++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 1334678888999999999999999999887322 34578888999999999 99
Q ss_pred HHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHH
Q 040965 150 EALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 150 ~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~ 220 (311)
+|.+.+++..+. +..+ ...++..+...+...|++++|...+++..+...-.++ ..++..+...|...|+++
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 999999886542 2122 2357788888999999999999999998754111111 237788899999999999
Q ss_pred HHHHHHHhC-CCC---CC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHHHHHHHHHhccchhH
Q 040965 221 EAKEFMRSM-PFE---PD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 221 ~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~ 286 (311)
+|.+.+++. ... .+ ..++..+...+...|++++|...++++++..+. ...++..++.+|...|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 999999887 111 11 356777888899999999999999999875432 2347889999999999999
Q ss_pred HHHHHHHHHHH
Q 040965 287 RATDLRKAMVE 297 (311)
Q Consensus 287 ~A~~~~~~m~~ 297 (311)
+|...+++..+
T Consensus 361 ~A~~~~~~al~ 371 (411)
T 4a1s_A 361 RALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=126.34 Aligned_cols=218 Identities=13% Similarity=-0.061 Sum_probs=179.4
Q ss_pred cCcchhHHHHHHHHhhccC---CchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEI---VLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 152 (311)
.|++++|...++++.+... +.+..++..+..++...|++++|...|+++.. .+..+|..+...+...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 5679999999999998642 23567888999999999999999999999843 36788999999999999999999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 040965 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~ 231 (311)
+.|+++.+.. +.+...+..+...+...|++++|...++++.+. .|+..........+...|++++|...+++. ..
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999863 336788999999999999999999999999864 455444444555667789999999999776 33
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----chhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 232 EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPK----HCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 232 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.|+......++..+...++.++|...++++.+..|. +..++..++.+|.+.|++++|...|++..+.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 174 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 344444445777788888999999999999876654 356889999999999999999999999987653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.8e-16 Score=119.17 Aligned_cols=194 Identities=11% Similarity=-0.016 Sum_probs=133.7
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHH
Q 040965 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVF 102 (311)
Q Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 102 (311)
++...+..+...+.+.|++++|+..|++..+ ..|+. ..+..+-.++. ..|++++|...+++.++.. +.+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----~~p~~~~a~~~lg~~~~---~~g~~~~A~~~~~~al~~~-P~~~~ 74 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK----ENPQDPEALYWLARTQL---KLGLVNPALENGKTLVART-PRYLG 74 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TSSSCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CCcHH
Confidence 4566788888888999999999999999887 44554 33333333222 3667888998888888875 33567
Q ss_pred HHHHHHHHHhhc-----------CCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 040965 103 MGTALIDLYGKV-----------GCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI 168 (311)
Q Consensus 103 ~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 168 (311)
.+..+..++... |++++|+..|++... | +...|..+..++...|++++|+..|++..+.. .+..
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 152 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPE 152 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchH
Confidence 778888888888 888888888887733 3 56677778888888888888888888887776 5677
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+..+..++...|++++|...|+++++. .+.+...+..+...+...|++++|.+.+++.
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7778888888888888888888888753 2234566777778888888888888877765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-14 Score=124.57 Aligned_cols=80 Identities=14% Similarity=-0.046 Sum_probs=37.5
Q ss_pred CHHHHHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc----cchhHHHH
Q 040965 218 LLSEAKEFMRSMPFEPDASVLGALLGACKI----HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG----LERWNRAT 289 (311)
Q Consensus 218 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 289 (311)
++++|.++|++.-...+...+..+...|.. .+++++|...|+++.+.+ ++.++..|..+|.. .+++++|.
T Consensus 346 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~ 423 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAW 423 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 344444444444111233444444444444 455555555555554432 23345555555554 45555555
Q ss_pred HHHHHHHHcc
Q 040965 290 DLRKAMVEAG 299 (311)
Q Consensus 290 ~~~~~m~~~~ 299 (311)
..|++..+.+
T Consensus 424 ~~~~~A~~~~ 433 (490)
T 2xm6_A 424 AWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHCC
Confidence 5555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-16 Score=128.50 Aligned_cols=245 Identities=7% Similarity=-0.008 Sum_probs=197.9
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhhhhhhcCc-chhHHHHHHHHhhccCCchHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCAGLVNEGG-LYLGKQVHGYILRNEIVLSVF 102 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~ 102 (311)
+..+|+.+..++.+.|++++|++.|+++++ +.|+.. .|..+-.++. ..|+ +++|+..++++++.. +.+..
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~----l~P~~~~a~~~~g~~l~---~~g~d~~eAl~~~~~al~l~-P~~~~ 167 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLK---SLQKDLHEEMNYITAIIEEQ-PKNYQ 167 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH---HTTCCHHHHHHHHHHHHHHC-TTCHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHH----hCccCHHHHHHHHHHHH---HcccCHHHHHHHHHHHHHHC-CCCHH
Confidence 456888999999999999999999999998 567654 4444443333 3665 999999999999986 44788
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
+|..+..++...|++++|+..|++++.. +...|..+..++...|++++|+..++++.+.. +-+...|+.+..++..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998443 67889999999999999999999999999874 3377889999989888
Q ss_pred -cccHHHH-----HHHHHHhhccCCCcc-chhhHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-cchHHHHHHHHHhcC
Q 040965 180 -AQLVELG-----LELFHSMLGKFEVVP-IMEHYGCVVDLLGRAG--LLSEAKEFMRSMPFEPD-ASVLGALLGACKIHG 249 (311)
Q Consensus 180 -~~~~~~a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~~g 249 (311)
.|..++| +..+++.+.. .| +...|..+...+...| ++++|.+.++++...|+ ...+..+...|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHh
Confidence 6665777 5888888853 44 4568888888888888 68999999988844554 466777778887764
Q ss_pred ---------ChhHHHHHHHHH-HhcCCCchhHHHHHHHHHhc
Q 040965 250 ---------AVDLCHEVGRRL-LELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 250 ---------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 281 (311)
.+++|..+++++ .+.+|.....|..++..+..
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 89999998888888776654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=129.42 Aligned_cols=265 Identities=11% Similarity=0.028 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-----HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----cC
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-----ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN----EI 97 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~ 97 (311)
..+......+...|++++|...|+++.+. .|+. ..+..+...+. ..|++++|.+.+++..+. +.
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~al~~~~~~~~ 78 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYF---YLHDYAKALEYHHHDLTLARTIGD 78 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHhhcccc
Confidence 45556677888999999999999998874 3432 23333333322 366789999988877654 21
Q ss_pred C-chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCC--------------------
Q 040965 98 V-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSR-------------------- 147 (311)
Q Consensus 98 ~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-------------------- 147 (311)
. ....++..+...|...|++++|...+++.... ...++..+...+...|+
T Consensus 79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 2 23567788899999999999999999887332 13478888899999999
Q ss_pred HHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc----chhhHHHHHHHHHhcCC
Q 040965 148 EKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP----IMEHYGCVVDLLGRAGL 218 (311)
Q Consensus 148 ~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~ 218 (311)
+++|.+.+++.... +..+ ...++..+...+...|++++|...+++..+.....+ ...++..+...+...|+
T Consensus 159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 238 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 238 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCC
Confidence 99999999886542 2122 235677888889999999999999998875311111 13377888899999999
Q ss_pred HHHHHHHHHhC-CC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHHHHHHHHHhccch
Q 040965 219 LSEAKEFMRSM-PF---EPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRYVVLSNIHAGLER 284 (311)
Q Consensus 219 ~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~ 284 (311)
+++|.+.+++. .. .++ ..++..+...+...|++++|...++++.+..+. ...++..++.+|.+.|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (338)
T 3ro2_A 239 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN 318 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999887 11 122 356677778899999999999999999875433 23478889999999999
Q ss_pred hHHHHHHHHHHHHc
Q 040965 285 WNRATDLRKAMVEA 298 (311)
Q Consensus 285 ~~~A~~~~~~m~~~ 298 (311)
+++|...+++..+.
T Consensus 319 ~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 319 HDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-15 Score=117.18 Aligned_cols=229 Identities=9% Similarity=-0.079 Sum_probs=163.9
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh-hhhcCcchhHHHHHHHHhhccCCchHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG-LVNEGGLYLGKQVHGYILRNEIVLSVFM 103 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (311)
++.++..+...+...|++++|++.|++..+.+ +...+..+-..+.. .+..+++++|...+++..+.+ +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 56778888888888899999999999887633 22333333332221 111566888888888888775 5666
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 104 GTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 104 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
+..+...|.. .+++++|+..|++.... +..++..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 153 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 153 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence 7778888888 88888888888877544 56677777788877 888888888888887765 455666677
Q ss_pred HHHHc----cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCCcchHHHHHHHH
Q 040965 175 TACAR----AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKEFMRSM-PFEPDASVLGALLGAC 245 (311)
Q Consensus 175 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~ 245 (311)
..|.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++. ... +...+..+...|
T Consensus 154 ~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~ 228 (273)
T 1ouv_A 154 SLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 77776 78888888888887754 2 34566777777777 78888888888776 222 255666666777
Q ss_pred Hh----cCChhHHHHHHHHHHhcCCCch
Q 040965 246 KI----HGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 246 ~~----~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
.. .+++++|...++++.+.+|++.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 77 7788888888888887777654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-14 Score=123.19 Aligned_cols=273 Identities=10% Similarity=-0.053 Sum_probs=146.3
Q ss_pred cCChHHHHHHHHHhccc-cHHHHHHHHHHHHh----cCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh-hhhcCc
Q 040965 8 NGDMDSAILLFENMLKR-DVVSWTSIINGFVR----NGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG-LVNEGG 81 (311)
Q Consensus 8 ~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~ 81 (311)
.+++++|...|++..+. ++.++..|...|.. .+++++|.+.|++..+.+ +...+..+-..+.. .+..++
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~ 130 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-----LPQAQQNLGVMYHEGNGVKVD 130 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCC
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCC
Confidence 57777777777776433 56667777777777 777777777777776644 22233333222211 111345
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREKEAL 152 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~ 152 (311)
+++|...|++..+.| +...+..|..+|.. .+++++|++.|++..+. +..++..+...|.. .+++++|.
T Consensus 131 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 207 (490)
T 2xm6_A 131 KAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISA 207 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 677777777766654 34445556666655 56677777777665333 45555666666655 56666666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHc----cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHHHHH
Q 040965 153 VMFDEMKEKGLRANEITFVAVLTACAR----AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKE 224 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 224 (311)
++|++..+.| +...+..+...|.. .++.++|..+|++..+. + +...+..+...|.. .+++++|.+
T Consensus 208 ~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~~~~~d~~~A~~ 280 (490)
T 2xm6_A 208 QWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYILEQGLAGAKEPLKALE 280 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHHHHHTTTSSCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHCCCCCCCCHHHHHH
Confidence 6666665543 33444445555543 55666666666665543 1 22234444445544 555555655
Q ss_pred HHHhCCCCCCcchHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc---hhHHHHHHHHHHH
Q 040965 225 FMRSMPFEPDASVLGALLGACKIH-----GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE---RWNRATDLRKAMV 296 (311)
Q Consensus 225 ~~~~~~~~p~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~ 296 (311)
+|++.-...+...+..+...|... +++++|...++++.+.++ +.++..|...|...| ++++|.++|++..
T Consensus 281 ~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 281 WYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--ATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 555551122333444444444443 455555555555544322 223444444444333 4444555554444
Q ss_pred H
Q 040965 297 E 297 (311)
Q Consensus 297 ~ 297 (311)
+
T Consensus 359 ~ 359 (490)
T 2xm6_A 359 A 359 (490)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-15 Score=116.56 Aligned_cols=191 Identities=16% Similarity=0.030 Sum_probs=152.1
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.. .+...+..+...+...|++++|.+++
T Consensus 50 ~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 128 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRL 128 (252)
T ss_dssp TTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 666888888888877764 33567777888888888999999988888733 25677888888899999999999999
Q ss_pred HHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 040965 156 DEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP 233 (311)
Q Consensus 156 ~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p 233 (311)
+++.+.+..| +...+..+...+...|++++|...++++.+. .+.+...+..++..|...|++++|.+.++++ ...|
T Consensus 129 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 206 (252)
T 2ho1_A 129 LEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206 (252)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred HHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9887733344 5677888888899999999999999998864 2334667888889999999999999999887 4444
Q ss_pred -CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHH
Q 040965 234 -DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 234 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
+...+..+...+...|++++|...++++.+..|+++...
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 207 QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 446677777888899999999999999999999887444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.1e-16 Score=129.50 Aligned_cols=291 Identities=8% Similarity=0.012 Sum_probs=204.4
Q ss_pred hhhhcCChHHHHHHHHHhcc--------ccHHHHHHHHHHH--HhcCCHhHHH-----------HHHHHhhcCCCCCCCc
Q 040965 4 GYVKNGDMDSAILLFENMLK--------RDVVSWTSIINGF--VRNGCFGEAI-----------CVFKNMMGNVNLVRPN 62 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~--~~~g~~~~A~-----------~~~~~~~~~~~~~~p~ 62 (311)
.+.+.+++++|..+++++.. ++...|..++..- .-.++++.+. +.++.+.... .+.+
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~ 98 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT 98 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence 46789999999999998822 2344445444332 2234444444 6666664321 0111
Q ss_pred h-H-HHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----cCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----
Q 040965 63 E-A-TYVSVLSSCAGLVNEGGLYLGKQVHGYILRN----EIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK----- 130 (311)
Q Consensus 63 ~-~-~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 130 (311)
. . .|.....+.... ..|++++|...+++..+. +.++ ...++..+..+|...|++++|+..+++...-
T Consensus 99 ~~l~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 177 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYEL-DQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE 177 (383)
T ss_dssp HHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc
Confidence 0 1 111112222222 378899999999998874 2222 3578889999999999999999999887321
Q ss_pred -----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC---
Q 040965 131 -----DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKF--- 197 (311)
Q Consensus 131 -----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--- 197 (311)
...+++.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...+++.++..
T Consensus 178 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 178 AYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 2457888999999999999999999987753 1111 13478889999999999999999999987620
Q ss_pred CC-ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CC-----CCC-cchHHHHHHHHHhcCC---hhHHHHHHHHHHhcCC
Q 040965 198 EV-VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF-----EPD-ASVLGALLGACKIHGA---VDLCHEVGRRLLELQP 266 (311)
Q Consensus 198 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~ 266 (311)
+. +....++..+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ +++|..++++. ...|
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~ 336 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYA 336 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHH
Confidence 12 334567889999999999999999999887 11 121 2234556667888888 77788777776 2334
Q ss_pred CchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 267 KHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 267 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.....+..++..|...|++++|...+++..+.
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44557889999999999999999999998764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-16 Score=122.26 Aligned_cols=220 Identities=7% Similarity=-0.025 Sum_probs=180.3
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--chH----hhHHHHHHHHHcCCCHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--KDV----CTWNAMISSLASNSREKEA 151 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a 151 (311)
..|++++|...++++.+.. +.+...+..+..+|...|++++|+..++++.. ++. .+|..+...+...|++++|
T Consensus 15 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A 93 (272)
T 3u4t_A 15 KNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLA 93 (272)
T ss_dssp TTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHH
Confidence 3778999999999999875 33566888899999999999999999999854 232 3488999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 152 LVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 152 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
.+.|++..+.. +.+..++..+...+...|++++|...+++.++. .+.+...+..+...+...+++++|.+.|+++ .
T Consensus 94 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 170 (272)
T 3u4t_A 94 IQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE 170 (272)
T ss_dssp HHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998863 336678999999999999999999999999864 2334567777773444556999999999998 4
Q ss_pred CCCC-cchHHHHHHHHHhcCC---hhHHHHHHHHHHhcC---CCc-----hhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 231 FEPD-ASVLGALLGACKIHGA---VDLCHEVGRRLLELQ---PKH-----CGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 231 ~~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
..|+ ...+..+...+...|+ +++|...++++.+.. |+. ..+|..++..|...|++++|...+++..+.
T Consensus 171 ~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 171 LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 4554 5667777778888888 889999999998754 442 257888999999999999999999999987
Q ss_pred cCC
Q 040965 299 GIR 301 (311)
Q Consensus 299 ~~~ 301 (311)
.+.
T Consensus 251 ~p~ 253 (272)
T 3u4t_A 251 DPT 253 (272)
T ss_dssp CTT
T ss_pred Ccc
Confidence 654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=131.44 Aligned_cols=281 Identities=12% Similarity=0.048 Sum_probs=208.0
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-c----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC--CCc-hHHHHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-D----VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV--RPN-EATYVSVLSS 72 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~p~-~~~~~~ll~~ 72 (311)
..+.+.|++++|...|+++.. | + ..+|..+...+...|++++|...++++.+..... .|. ...+..+...
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 96 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 96 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 457789999999999999843 2 3 3578899999999999999999999876531101 222 2233333332
Q ss_pred hhhhhhcCcchhHHHHHHHHhhccCC-----chHHHHHHHHHHHhhcCC--------------------HHHHHHHHHHc
Q 040965 73 CAGLVNEGGLYLGKQVHGYILRNEIV-----LSVFMGTALIDLYGKVGC--------------------LERAIRVFKSM 127 (311)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 127 (311)
+...|++++|...+++..+.... ....++..+...|...|+ +++|...+++.
T Consensus 97 ---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 97 ---LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 23377799999999988764211 124578889999999999 99999998876
Q ss_pred ccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 128 VIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 128 ~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
... ...++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++.
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 321 3457888899999999999999999998653 1111 1347888888999999999999999998
Q ss_pred hccC---CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-C---CCCC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 194 LGKF---EVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-P---FEPD----ASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 194 ~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
.+.. +..+ ...++..+...|...|++++|.+.+++. . ..++ ..++..+...+...|++++|...++++
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7431 1111 1557788899999999999999999887 1 1122 456777888899999999999999999
Q ss_pred HhcC------CCchhHHHHHHHHHhccchhH
Q 040965 262 LELQ------PKHCGRYVVLSNIHAGLERWN 286 (311)
Q Consensus 262 ~~~~------~~~~~~~~~l~~~~~~~g~~~ 286 (311)
.+.. +....++..+...+...|+..
T Consensus 334 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 334 LEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 8742 223457778888888888763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-15 Score=115.77 Aligned_cols=210 Identities=11% Similarity=-0.058 Sum_probs=181.6
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREK 149 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 149 (311)
.|++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++.... +..++..+...|.. .++++
T Consensus 19 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~ 95 (273)
T 1ouv_A 19 EKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTN 95 (273)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHH
Confidence 667999999999998843 45677889999999 99999999999998554 67888889999999 99999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHc----cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHH
Q 040965 150 EALVMFDEMKEKGLRANEITFVAVLTACAR----AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSE 221 (311)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 221 (311)
+|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+...|.. .+++++
T Consensus 96 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~ 168 (273)
T 1ouv_A 96 KALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKK 168 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHH
Confidence 9999999998875 67788888889998 99999999999999875 3 45577888888888 999999
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc----cchhHHHHHHHH
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKI----HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG----LERWNRATDLRK 293 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 293 (311)
|.+.|++.--..+...+..+...|.. .+++++|...++++.+.+| +.++..+..+|.. .+++++|...|+
T Consensus 169 A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~ 246 (273)
T 1ouv_A 169 ALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFK 246 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 99999988212456777888888988 9999999999999998876 4588899999999 999999999999
Q ss_pred HHHHccC
Q 040965 294 AMVEAGI 300 (311)
Q Consensus 294 ~m~~~~~ 300 (311)
+..+.|.
T Consensus 247 ~a~~~~~ 253 (273)
T 1ouv_A 247 KGCKLGA 253 (273)
T ss_dssp HHHHHTC
T ss_pred HHHHcCC
Confidence 9988764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.5e-16 Score=120.62 Aligned_cols=198 Identities=15% Similarity=0.099 Sum_probs=146.2
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...++++.+.. +.+...+..+..++...|++++|+..++++.. .+..++..+...+...|++++|.+.+
T Consensus 36 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114 (243)
T ss_dssp ------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHH
Confidence 555666666666666543 33456666777777788888888888877632 25667777888888888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP- 233 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 233 (311)
+++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...|
T Consensus 115 ~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 191 (243)
T 2q7f_A 115 EKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG 191 (243)
T ss_dssp HHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8887763 346677888888888899999999999888764 2335667888888899999999999999887 3333
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
+..++..+...+...|++++|...++++.+..|++..++..+.....
T Consensus 192 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 192 HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH 238 (243)
T ss_dssp CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence 45678888889999999999999999999999998877766554443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-14 Score=122.93 Aligned_cols=292 Identities=10% Similarity=-0.033 Sum_probs=206.4
Q ss_pred hhhhhcCChHHHHHHHHHhcc-----------c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCC----CCCCc-hHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK-----------R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVN----LVRPN-EAT 65 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~-----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~p~-~~~ 65 (311)
..+...|++++|++.|++..+ + ...+|+.+..+|...|++++|...+++..+..+ ...++ ..+
T Consensus 59 ~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~ 138 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPEL 138 (472)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHH
Confidence 356788999999999988621 1 356899999999999999999999998764210 01222 234
Q ss_pred HHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH---hhcCCHHHHHHHHHHccc---chHhhHHHHH
Q 040965 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY---GKVGCLERAIRVFKSMVI---KDVCTWNAMI 139 (311)
Q Consensus 66 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~---~~~~~~~~l~ 139 (311)
+...-.++...+ .+++++|...|++.++..+ .++..+..+..++ ...++.++|++.+++..+ .+..++..+.
T Consensus 139 ~~~~g~~~~~~~-~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 139 DCEEGWTRLKCG-GNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHC-TTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHc-cccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 443333333344 5679999999999998753 3455555555553 445777889988887733 2455666555
Q ss_pred HHHH----cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 140 SSLA----SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 140 ~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
..+. ..+++++|.+.+++..... +.+...+..+...+...|++++|...++++.+. .+.+..++..+..+|..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 5544 3577889999999988763 446778889999999999999999999999864 22345567667666543
Q ss_pred c-------------------CCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh---H
Q 040965 216 A-------------------GLLSEAKEFMRSM-PFE-PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG---R 271 (311)
Q Consensus 216 ~-------------------g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~ 271 (311)
. +.+++|...+++. ... .+...+..+...+...|++++|...|+++++..|++.. .
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 2 3456777778776 333 45677888889999999999999999999998877543 2
Q ss_pred HHHHHHH-HhccchhHHHHHHHHHHHHcc
Q 040965 272 YVVLSNI-HAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 272 ~~~l~~~-~~~~g~~~~A~~~~~~m~~~~ 299 (311)
+..++.. +...|++++|...|++..+..
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344433 457899999999998887643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3e-16 Score=133.78 Aligned_cols=208 Identities=9% Similarity=-0.069 Sum_probs=180.2
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH-HHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL-ERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDE 157 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~ 157 (311)
++++.+.++...... +.+...+..+...|...|++ ++|++.|+++.+. +...|..+..+|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666777777665543 34678889999999999999 9999999998433 577899999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHcc---------ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc--------CCHH
Q 040965 158 MKEKGLRANEITFVAVLTACARA---------QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA--------GLLS 220 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 220 (311)
..+. .|+...+..+...+... |++++|...++++++. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9876 57778899999999999 9999999999999864 233467889999999998 9999
Q ss_pred HHHHHHHhC-CCCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 221 EAKEFMRSM-PFEP----DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 221 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
+|.+.|++. ...| +...|..+...|...|++++|...|+++.+.+|++..++..+..++...|++++|.+.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999998 4455 6678888999999999999999999999999999999999999999999999999876543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.1e-14 Score=111.30 Aligned_cols=192 Identities=13% Similarity=0.039 Sum_probs=126.1
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcC-CCHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASN-SREKEALVM 154 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~~~a~~~ 154 (311)
.|++++|.+.++++.+.. +.+..++..+..+|...|++++|...++++.. .+..++..+...+... |++++|.+.
T Consensus 21 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (225)
T 2vq2_A 21 GQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY 99 (225)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence 333444555444444432 22344555566666666777777776666532 2455666777777777 777777777
Q ss_pred HHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 040965 155 FDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE 232 (311)
Q Consensus 155 ~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~ 232 (311)
++++.+.+..| +...+..+..++...|++++|...++++.+. .+.+...+..++..+...|++++|.+.++++ ...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 77777632233 3566777777788888888888888877753 2224566777778888888888888888777 323
Q ss_pred C--CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHH
Q 040965 233 P--DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV 273 (311)
Q Consensus 233 p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (311)
| +...+..+...+...|+.+.+..+++.+.+..|+++....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 178 EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3 4455555666677888888888888888888888764443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-15 Score=111.16 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=96.1
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
+..|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 3455555556666666666666666655542 224455555566666666666666666665542 1223344555555
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHH
Q 040965 212 LLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRAT 289 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 289 (311)
.+...++++.|.+.+++. ...| +...+..+...+...|++++|...|+++++.+|.++.+|..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 556666666666666555 2223 33455555566666666666666666666666666666666666666667777776
Q ss_pred HHHHHHHHc
Q 040965 290 DLRKAMVEA 298 (311)
Q Consensus 290 ~~~~~m~~~ 298 (311)
..|++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 666666554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-15 Score=123.25 Aligned_cols=217 Identities=11% Similarity=0.046 Sum_probs=182.9
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC-HHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC-LERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
+.|++++|+..++++++.. +.+..+|+.+..++...|+ +++|+..|++++.. +...|..+..++...|++++|+.
T Consensus 109 ~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred HCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHH
Confidence 4778999999999999876 4467889999999999997 99999999998443 67889999999999999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh-cCCHHHH-----HHHHH
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR-AGLLSEA-----KEFMR 227 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A-----~~~~~ 227 (311)
.|+++.+.. +-+...|..+..++...|++++|+..++++++. .+-+...|+.+..++.. .|..++| ++.++
T Consensus 188 ~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 188 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 999999874 337889999999999999999999999999964 22356789999999998 6665777 47777
Q ss_pred hC-CCCCC-cchHHHHHHHHHhcC--ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc---------hhHHHHHHHHH
Q 040965 228 SM-PFEPD-ASVLGALLGACKIHG--AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE---------RWNRATDLRKA 294 (311)
Q Consensus 228 ~~-~~~p~-~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~A~~~~~~ 294 (311)
+. ...|+ ...|..+...+...| ++++|...++++ +..|+++.++..++.+|.+.| .+++|.+++++
T Consensus 265 ~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~ 343 (382)
T 2h6f_A 265 EMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEI 343 (382)
T ss_dssp HHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 76 45564 467777887888877 689999999998 889999889999999999874 35899999999
Q ss_pred H-HHcc
Q 040965 295 M-VEAG 299 (311)
Q Consensus 295 m-~~~~ 299 (311)
+ .+.+
T Consensus 344 l~~~~D 349 (382)
T 2h6f_A 344 LAKEKD 349 (382)
T ss_dssp HHHTTC
T ss_pred HHHHhC
Confidence 8 5543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-15 Score=126.33 Aligned_cols=262 Identities=12% Similarity=0.053 Sum_probs=196.4
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cH----HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC--CCc-hHHHHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DV----VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV--RPN-EATYVSVLSS 72 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~p~-~~~~~~ll~~ 72 (311)
..+.+.|++++|+..|+++.. | +. .+|..+...|...|++++|...+++..+..... .|. ...+..+-..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 356789999999999999843 2 32 478899999999999999999999987631001 122 2233333332
Q ss_pred hhhhhhcCcchhHHHHHHHHhhcc-----CCchHHHHHHHHHHHhhcCC-----------------HHHHHHHHHHcccc
Q 040965 73 CAGLVNEGGLYLGKQVHGYILRNE-----IVLSVFMGTALIDLYGKVGC-----------------LERAIRVFKSMVIK 130 (311)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~ 130 (311)
+...|++++|...+++..+.. .+....++..+..+|...|+ +++|+..+++....
T Consensus 136 ---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 212 (411)
T 4a1s_A 136 ---LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL 212 (411)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 233777999999999887652 12235688889999999999 99999998876321
Q ss_pred ---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CC--cHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 131 ---------DVCTWNAMISSLASNSREKEALVMFDEMKEKGL---RA--NEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 131 ---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
...++..+...+...|++++|.+.+++..+... .+ ...++..+...+...|++++|...+++....
T Consensus 213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 292 (411)
T 4a1s_A 213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL 292 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 345788899999999999999999999875311 11 1237788889999999999999999988753
Q ss_pred CCCc----cchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC---CC----cchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 197 FEVV----PIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE---PD----ASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 197 ~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
..-. ....++..+...|...|++++|.+.+++. ... ++ ..++..+...|...|++++|...++++.+.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 12467888899999999999999999887 111 11 346777888899999999999999999986
Q ss_pred CCC
Q 040965 265 QPK 267 (311)
Q Consensus 265 ~~~ 267 (311)
.+.
T Consensus 373 ~~~ 375 (411)
T 4a1s_A 373 AXX 375 (411)
T ss_dssp CCH
T ss_pred Hhh
Confidence 654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-15 Score=121.46 Aligned_cols=262 Identities=12% Similarity=0.066 Sum_probs=192.6
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-c----HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCC--CCc-hHHHHHHHHH
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-D----VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLV--RPN-EATYVSVLSS 72 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~p~-~~~~~~ll~~ 72 (311)
..+.+.|++++|...|+++.. | + ...|..+...+...|++++|.+.+++..+..... .|. ...+..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 457789999999999999843 2 3 4678899999999999999999999876531001 122 2233333332
Q ss_pred hhhhhhcCcchhHHHHHHHHhhccCC-----chHHHHHHHHHHHhhcCC--------------------HHHHHHHHHHc
Q 040965 73 CAGLVNEGGLYLGKQVHGYILRNEIV-----LSVFMGTALIDLYGKVGC--------------------LERAIRVFKSM 127 (311)
Q Consensus 73 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~ 127 (311)
+...|++++|...+++..+.... ....++..+...|...|+ +++|...+++.
T Consensus 93 ---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 93 ---LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp ---HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred ---HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 23377799999999988764211 124578889999999999 99999998876
Q ss_pred ccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 128 VIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 128 ~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
... ...++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|...+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 321 3457888889999999999999999987653 1111 2347888888999999999999999988
Q ss_pred hccCCCcc----chhhHHHHHHHHHhcCCHHHHHHHHHhC-CC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 194 LGKFEVVP----IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PF---EPD----ASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 194 ~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
.+...-.+ ...++..+...|...|++++|.+.+++. .. .++ ..++..+...+...|++++|...++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 75311111 1457788889999999999999999887 11 111 346677888899999999999999999
Q ss_pred HhcCCC
Q 040965 262 LELQPK 267 (311)
Q Consensus 262 ~~~~~~ 267 (311)
.+..+.
T Consensus 330 ~~~~~~ 335 (338)
T 3ro2_A 330 LEISRE 335 (338)
T ss_dssp HHC---
T ss_pred HHHHHh
Confidence 986654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-14 Score=119.97 Aligned_cols=291 Identities=8% Similarity=-0.021 Sum_probs=196.6
Q ss_pred hhhcCChHHHHHHHHHhcc--------ccHHHHHHHHHHH--HhcCCHhHHH---------HHHHHhhcCCCCCCCchHH
Q 040965 5 YVKNGDMDSAILLFENMLK--------RDVVSWTSIINGF--VRNGCFGEAI---------CVFKNMMGNVNLVRPNEAT 65 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~--~~~g~~~~A~---------~~~~~~~~~~~~~~p~~~~ 65 (311)
+.+.+++++|..+++++.+ ++...|..++..- .-.+.+..+. +.++.+........+....
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~ 101 (378)
T 3q15_A 22 MIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKY 101 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHH
Confidence 3789999999999998722 1344455554431 1122233333 5566554321000111111
Q ss_pred HHHHHHHhhhhhhcCcchhHHHHHHHHhhccC----C-chHHHHHHHHHHHhhcCCHHHHHHHHHHcccc----------
Q 040965 66 YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI----V-LSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------- 130 (311)
Q Consensus 66 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------- 130 (311)
+.....+.... ..|++++|...+++..+... + ....++..+..+|...|+++.|...+++...-
T Consensus 102 ~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 102 YSLFFRGMYEF-DQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 11222222222 37889999999999876421 1 23567888999999999999999999887321
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC---CCccc
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKF---EVVPI 202 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 202 (311)
...+++.+..+|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...+++.++.. +.+..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 2457888999999999999999999987653 2111 23577888899999999999999999988611 11223
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCc---chHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCchhHH
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDA---SVLGALLGACKIHGA---VDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~---~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
..++..+...|.+.|++++|.+.+++. ...++. ..+..+...+...++ +++|...+++. ...|.....+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~ 339 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHH
Confidence 567888999999999999999999887 211221 234444445666777 77777777762 2234444577
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHH
Q 040965 273 VVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 273 ~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
..++..|...|++++|...|++..+
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999999998865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-15 Score=120.94 Aligned_cols=198 Identities=11% Similarity=0.058 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHccc-----------chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc------CC
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVI-----------KDVCTWNAMISSLASNSREKEALVMFDEMKEK------GL 163 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~ 163 (311)
..++..+..+|...|++++|...++++.. ....++..+...+...|++++|.+.++++.+. +.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555566666666666666666665521 13445666666666677777777766666543 21
Q ss_pred CC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC------CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C-----
Q 040965 164 RA-NEITFVAVLTACARAQLVELGLELFHSMLGKF------EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P----- 230 (311)
Q Consensus 164 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----- 230 (311)
.| ....+..+...+...|++++|..+++++.+.. ..+....++..+..+|...|++++|.+.++++ .
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 22 23456666666777777777777776665420 11122345666667777777777777776655 1
Q ss_pred ----CCCCcch-------HHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 231 ----FEPDASV-------LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 231 ----~~p~~~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
..+.... +..+...+...+.+.++...+++.....|....++..++.+|.+.|++++|.+++++..+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1121111 1112233445667777788888888777888888999999999999999999999988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=106.97 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
++.+|..+...|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|...++...... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 567889999999999999999999999843 367889999999999999999999999988764 3366778888888
Q ss_pred HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 254 (311)
+...++++.|...+.+.... .+.+...+..+..+|.+.|++++|++.|++. ...| +..++..+...|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998864 2335677888999999999999999999998 4455 557788899999999999999
Q ss_pred HHHHHHHHhcCCCch
Q 040965 255 HEVGRRLLELQPKHC 269 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~ 269 (311)
...|+++++.+|+++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999998764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-13 Score=123.95 Aligned_cols=235 Identities=11% Similarity=0.087 Sum_probs=167.3
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
++.+|..+..++...|++++|++.|.+. -|...|..+..++.. .|+++++.+.+....+.. +++...
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~---lGkyEEAIeyL~mArk~~--~e~~Id 1170 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANT---SGNWEELVKYLQMARKKA--RESYVE 1170 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhc--cccccc
Confidence 4557777888888888888888887554 144555556654443 555888888887766654 222233
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
+.++.+|++.+++++...+. ..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++
T Consensus 1171 t~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 34777788887777544433 3445556667778888888888888888763 36777888888888888
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
.|.+.+++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|..+++..+.+
T Consensus 1239 ~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1239 AAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 8888887763 3457777777888888888888776643 345556678888899999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcc--chhHHHHHHHH
Q 040965 265 QPKHCGRYVVLSNIHAGL--ERWNRATDLRK 293 (311)
Q Consensus 265 ~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~ 293 (311)
+|.+...|..|..+|++. ++..++.++|.
T Consensus 1310 eraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1310 ERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 988888887777777654 45555555554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-13 Score=110.89 Aligned_cols=236 Identities=11% Similarity=0.119 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHhc----CCH----hHHHHHHHHhhcCCCCCCCc-hHHHHHHHHHhhhhh----hcCcc-------hhH
Q 040965 26 VVSWTSIINGFVRN----GCF----GEAICVFKNMMGNVNLVRPN-EATYVSVLSSCAGLV----NEGGL-------YLG 85 (311)
Q Consensus 26 ~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~----~~~~~-------~~a 85 (311)
...|...+....+. ++. ++|..+|+++.+ ..|+ ...|..+...+...+ +.|++ ++|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~----~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A 83 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL----VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHH----HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHH
Confidence 34555555544332 122 566777777766 3343 344554444333221 13444 667
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHh-hHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVC-TWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++.. | +.. .|..++..+.+.|++++|..+|++..+.
T Consensus 84 ~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 77777666621123445666666666667777777777766632 2 222 5666666666667777777777766654
Q ss_pred CCCCcHHHHHHHHHHHH-ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C---CCCC--
Q 040965 162 GLRANEITFVAVLTACA-RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P---FEPD-- 234 (311)
Q Consensus 162 ~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~-- 234 (311)
. +++...|........ ..|+++.|..+|++.++. .+.+...|..++..+.+.|++++|..+|++. . ..|+
T Consensus 164 ~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~ 240 (308)
T 2ond_A 164 A-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240 (308)
T ss_dssp T-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGC
T ss_pred C-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHH
Confidence 2 223333433322211 256677777777666653 1223455666666666667777777776666 2 2332
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
...|..++......|+.+.|..+++++.+..|++
T Consensus 241 ~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 241 GEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 3455556666666677777777777776666653
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-13 Score=114.25 Aligned_cols=211 Identities=9% Similarity=-0.037 Sum_probs=165.9
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhh-------cCCHH-------HHHHHHHHccc---c-hHhhHHHHHHHHHcC
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGK-------VGCLE-------RAIRVFKSMVI---K-DVCTWNAMISSLASN 145 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~~~~l~~~~~~~ 145 (311)
.+..+|++.+... +.+...|..++..+.+ .|+++ +|..+|++... | +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 4555666666653 3456777778877775 69987 89999998864 3 578899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH-HHhcCCHHHH
Q 040965 146 SREKEALVMFDEMKEKGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL-LGRAGLLSEA 222 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 222 (311)
|++++|..+|+++.+. .|+ ...|..++..+.+.|+++.|..+|++..+.. +.+...|...+.. +...|++++|
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999985 453 3588888888999999999999999998642 2223333332222 3468999999
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh----HHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 223 KEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG----RYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 223 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
..+|++. ...| +...|..++..+.+.|+.++|..+|++++...|.++. .|...+......|+.+.+..+++++.
T Consensus 411 ~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~ 490 (530)
T 2ooe_A 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 490 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 4345 4678888888889999999999999999987665543 78788888889999999999999987
Q ss_pred Hcc
Q 040965 297 EAG 299 (311)
Q Consensus 297 ~~~ 299 (311)
+.-
T Consensus 491 ~~~ 493 (530)
T 2ooe_A 491 TAF 493 (530)
T ss_dssp HHT
T ss_pred HHC
Confidence 654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-14 Score=106.99 Aligned_cols=167 Identities=14% Similarity=0.002 Sum_probs=95.7
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh
Q 040965 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR 215 (311)
Q Consensus 136 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (311)
..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHH
Confidence 333444444444444444444443321 123444444455555555555555555555432 12233445555555555
Q ss_pred cCCHHHHHHHHHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 216 AGLLSEAKEFMRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 216 ~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.|++++|.+.++++ .. +.+...+..+...+...|++++|...++++.+..|.+..++..++.++...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 168 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFK 168 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666655555 11 22345556666667777777777777777777777777777777888888888888888887
Q ss_pred HHHHccCCCCCc
Q 040965 294 AMVEAGIRKIPA 305 (311)
Q Consensus 294 ~m~~~~~~~~~~ 305 (311)
+..+........
T Consensus 169 ~~~~~~~~~~~~ 180 (186)
T 3as5_A 169 KANELDEGASVE 180 (186)
T ss_dssp HHHHHHHCCCGG
T ss_pred HHHHcCCCchhh
Confidence 777665444333
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-13 Score=106.98 Aligned_cols=149 Identities=10% Similarity=-0.002 Sum_probs=64.8
Q ss_pred cCcchhHHHHHHHHhhccCCchHH-HHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHH-HcCCCHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVF-MGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSL-ASNSREKEALV 153 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~-~~~~~~~~a~~ 153 (311)
.|++++|..+|+++++..+. +.. +|..++..+.+.|++++|..+|++.... +...|...+... ...|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33455555555555543211 122 4444555555555555555555554321 122222211111 12355555555
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+|++..+.. +-+...|..++..+.+.|++++|..+|++.+....++| ....|..++..+.+.|+.++|..+++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555544431 12344444445555555555555555555544311232 1234444444444555555555555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.9e-13 Score=113.89 Aligned_cols=45 Identities=11% Similarity=0.006 Sum_probs=15.6
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcC-----CHhHHHHHHHHhhcCC
Q 040965 12 DSAILLFENMLKRDVVSWTSIINGFVRNG-----CFGEAICVFKNMMGNV 56 (311)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~ 56 (311)
++|...|++..+.++..+..+...+...+ ++++|+..|++..+.|
T Consensus 55 ~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g 104 (452)
T 3e4b_A 55 KQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG 104 (452)
T ss_dssp ----------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555555554444445555555444433 5566666666666544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.3e-15 Score=117.69 Aligned_cols=240 Identities=10% Similarity=0.056 Sum_probs=164.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC----CCCc-hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL----VRPN-EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN---- 95 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~p~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---- 95 (311)
+..++..+...+...|++++|..+|+++.+.... ..|. ...+..+...+ ...|++++|...+++..+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~---~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVY---RDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999999999999999762100 0122 23344444333 2367799999999988775
Q ss_pred --cC-CchHHHHHHHHHHHhhcCCHHHHHHHHHHccc-----------chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 96 --EI-VLSVFMGTALIDLYGKVGCLERAIRVFKSMVI-----------KDVCTWNAMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 96 --~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
+. +....++..+..+|...|++++|...++++.. ....++..+...+...|++++|.++++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 33467888999999999999999999998742 14567888999999999999999999998764
Q ss_pred ------CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC------CCccchhh-------HHHHHHHHHhcCCHHH
Q 040965 162 ------GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKF------EVVPIMEH-------YGCVVDLLGRAGLLSE 221 (311)
Q Consensus 162 ------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~-------~~~l~~~~~~~g~~~~ 221 (311)
+..| ...++..+...+...|++++|...++++.+.. ...+.... +..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 2233 34678888999999999999999999988531 11121111 2222223334455555
Q ss_pred HHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 222 AKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 222 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
|...++.. ...| +..++..+...|...|++++|...+++++++.|.
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 55556655 2233 3466788888999999999999999999987664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.8e-14 Score=125.83 Aligned_cols=163 Identities=14% Similarity=0.149 Sum_probs=101.7
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCV 209 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 209 (311)
+..+|+.+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++.++. .| +...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 34555566666666666666666666655542 113555666666666666666666666666532 33 24556666
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHH
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 287 (311)
..+|...|++++|.+.|++. .+.|+ ...+..+...+...|++++|+..|+++++++|++..++..++.++...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 66666666666666666665 33443 35566666667777777777777777777777776677777777777777777
Q ss_pred HHHHHHHHHH
Q 040965 288 ATDLRKAMVE 297 (311)
Q Consensus 288 A~~~~~~m~~ 297 (311)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7776666554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-13 Score=114.41 Aligned_cols=259 Identities=11% Similarity=-0.020 Sum_probs=182.2
Q ss_pred HHhcCCHhHHHHHHHHhhcCCCCCCCc--hHHHHHHHHHhhhhhhcCcchhHH-----------HHHHHHhhccCCch--
Q 040965 36 FVRNGCFGEAICVFKNMMGNVNLVRPN--EATYVSVLSSCAGLVNEGGLYLGK-----------QVHGYILRNEIVLS-- 100 (311)
Q Consensus 36 ~~~~g~~~~A~~~~~~~~~~~~~~~p~--~~~~~~ll~~~~~~~~~~~~~~a~-----------~~~~~~~~~~~~~~-- 100 (311)
+.+.+++++|..+++++.+.-.....| ...|-.++..-.... .+.++.+. +.++.+.....+.+
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~-~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLM-LEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-HHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 467899999999999986643223233 344444444322111 22244444 66666654321111
Q ss_pred --HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC--C---C
Q 040965 101 --VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEKG--L---R 164 (311)
Q Consensus 101 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~---~ 164 (311)
...+......+...|++++|+..+++.... ...++..+...|...|++++|...+++..+.- . .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 112233667788999999999999988332 35678899999999999999999999977531 1 1
Q ss_pred C-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc----chhhHHHHHHHHHhcCCHHHHHHHHHhC-C-----CC-
Q 040965 165 A-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP----IMEHYGCVVDLLGRAGLLSEAKEFMRSM-P-----FE- 232 (311)
Q Consensus 165 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----~~- 232 (311)
+ ...++..+...|...|++++|...+++.++...-.+ ...++..+..+|...|++++|.+.+++. . ..
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 1 245788888999999999999999999875311111 1247888999999999999999999887 1 12
Q ss_pred C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCchhHHHHHHHHHhccch---hHHHHHHHHHH
Q 040965 233 P-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ-----PKHCGRYVVLSNIHAGLER---WNRATDLRKAM 295 (311)
Q Consensus 233 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m 295 (311)
| ...++..+...+...|++++|...++++.+.. |.....+..+...|...|+ +++|..++++.
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 3 23567778888999999999999999998753 3333346678889999998 77777777654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-12 Score=105.08 Aligned_cols=266 Identities=11% Similarity=-0.067 Sum_probs=178.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchH----HHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCC---c-
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEA----TYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV---L- 99 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~- 99 (311)
.+......+...|++++|...+++..... ...+.. .+..+-. .+...|++++|...+++..+.... +
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 90 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGE---VLHCKGELTRSLALMQQTEQMARQHDVWH 90 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHH---HHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHH---HHHhcCcHHHHHHHHHHHHHHHHhcCcHH
Confidence 34455566778899999999999887743 111222 1112211 122367799999998887764211 1
Q ss_pred -hHHHHHHHHHHHhhcCCHHHHHHHHHHccc----------c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC--C
Q 040965 100 -SVFMGTALIDLYGKVGCLERAIRVFKSMVI----------K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLR--A 165 (311)
Q Consensus 100 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~ 165 (311)
...++..+...+...|++++|...+++... + ....+..+...+...|++++|...+++....... +
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 123456778888899999999999887732 1 2345666788888999999999999987754221 1
Q ss_pred --cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHH-----HHHHHHHhcCCHHHHHHHHHhC-CCCCCc--
Q 040965 166 --NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYG-----CVVDLLGRAGLLSEAKEFMRSM-PFEPDA-- 235 (311)
Q Consensus 166 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-- 235 (311)
...++..+...+...|++++|...+++.............+. ..+..+...|++++|.+.+++. ...|..
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 235677788888899999999999988764311111111121 2334477899999999999888 222221
Q ss_pred ---chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 236 ---SVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 236 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
..+..+...+...|++++|...++++.+..+. ...++..+..++...|+.++|...+++....
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 13456667788899999999999988764321 1236667788888999999999988887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-13 Score=104.42 Aligned_cols=189 Identities=10% Similarity=0.019 Sum_probs=129.0
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...|++.++...+++...+..+..++...|++++|+..|++.... +...|..+..+|...|++++|.+.+
T Consensus 20 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 20 AKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 6778888888888887764356666666888888888888888888877332 5667778888888888888888888
Q ss_pred HHHHHcCCCCcH-------HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc---hhhHHHHHHHHHhcCCHHHHHHH
Q 040965 156 DEMKEKGLRANE-------ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI---MEHYGCVVDLLGRAGLLSEAKEF 225 (311)
Q Consensus 156 ~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~ 225 (311)
++..+.. +.+. ..|..+...+...|++++|...|+++++. .|+ ...+..+..+|...|+. .
T Consensus 100 ~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~~~~~~~~~~-----~ 170 (228)
T 4i17_A 100 TEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLGVLFYNNGAD-----V 170 (228)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHHHHH-----H
T ss_pred HHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHHHHHHHHHHH-----H
Confidence 8877753 2233 45667777778888888888888888753 444 45667777777655433 2
Q ss_pred HHhC-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 226 MRSM-PF-EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 226 ~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
++++ .. ..+...|.... ....+.+++|...++++.+..|++..+...+...
T Consensus 171 ~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 171 LRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 2222 11 12233333332 3345667888888888888888887666555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=109.41 Aligned_cols=219 Identities=10% Similarity=-0.001 Sum_probs=150.7
Q ss_pred cCcchhHHHHHHHHhhc-------cCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc-----------chHhhHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRN-------EIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI-----------KDVCTWNAMIS 140 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~ 140 (311)
.|++++|...+++.++. ..+....++..+..+|...|++++|+..++++.. ....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 55566666666665542 2233567788889999999999999999988732 14567888889
Q ss_pred HHHcCCCHHHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccC------CCccchhhHH
Q 040965 141 SLASNSREKEALVMFDEMKEK------GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKF------EVVPIMEHYG 207 (311)
Q Consensus 141 ~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ 207 (311)
.|...|++++|.+.+++..+. ...| ...++..+...+...|++++|...++++.+.. ..+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999987754 1123 35678888888999999999999998887530 1222356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-C---------CCCCcch-HHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCchh
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM-P---------FEPDASV-LGALLGACKIHGAV------DLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~~~~-~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~ 270 (311)
.+..+|...|++++|.+++++. . ..+.... +..+...+...+.. ..+...++......|....
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNT 253 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 8889999999999999998776 1 2333333 33333333333332 2223333332223455566
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 271 RYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 271 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++..++.+|...|++++|..++++..+
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888999999999999999999998765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-13 Score=104.03 Aligned_cols=194 Identities=12% Similarity=-0.020 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHccc----chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVI----KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
++..+......+...|++++|+..|++... ++...+..+..++...|++++|++.+++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 456777788888888888888888887733 556666668888888888888888888887763 225677888888
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccch-----hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIM-----EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---ASVLGALLGACK 246 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~ 246 (311)
.+...|++++|...+++.++...-.+.. ..|..+...+...|++++|.+.|++. ...|+ ...+..+...+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 8888888888888888887542111111 45677777788888888888888877 55665 345555555554
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
. .+...++++....+.+...|.... ....+.+++|...+++..+..+.
T Consensus 165 ~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 165 N-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp H-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred H-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence 3 344556666666666554554433 34557789999999999887544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-12 Score=107.46 Aligned_cols=262 Identities=10% Similarity=-0.027 Sum_probs=181.3
Q ss_pred hhhhcCChHHHHHHHHHhcc--c--cH----HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhh
Q 040965 4 GYVKNGDMDSAILLFENMLK--R--DV----VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCA 74 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~ 74 (311)
.+...|++++|...+++... + +. .+++.+...+...|++++|.+.+++..+..+ -.++... ...+.....
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMAR-QHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 45678999999999998732 1 22 2577788889999999999999999876321 0112211 111111111
Q ss_pred hhhhcCcchhHHHHHHHHhhcc----CC--c-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--------hHhhHHHHH
Q 040965 75 GLVNEGGLYLGKQVHGYILRNE----IV--L-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK--------DVCTWNAMI 139 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~ 139 (311)
.....|++++|...+++..+.. .+ | ...++..+...+...|++++|...+++.... ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 2233788999999999887642 11 2 3456677889999999999999999887321 235677888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHH----HHHHHHHccccHHHHHHHHHHhhccCCCcc--chhhHHHHHH
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRAN--EITFV----AVLTACARAQLVELGLELFHSMLGKFEVVP--IMEHYGCVVD 211 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~ 211 (311)
..+...|++++|...+++.......++ ..... ..+..+...|++++|...+++........+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 899999999999999999875421211 11111 233447789999999999999875421111 1224567788
Q ss_pred HHHhcCCHHHHHHHHHhC-------CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040965 212 LLGRAGLLSEAKEFMRSM-------PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 266 (311)
.+...|++++|.+.+++. +..++. ..+..+...+...|+.++|...++++.+..+
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 999999999999999876 111122 2455566778899999999999999987543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-12 Score=119.13 Aligned_cols=255 Identities=11% Similarity=0.066 Sum_probs=196.7
Q ss_pred hhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcc
Q 040965 3 DGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 82 (311)
.++.+.|++++|+..|.+. .|...|..++.++.+.|++++|++.|....+.. -.|...+ .+..++++. +++
T Consensus 1113 KAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt--~LafaYAKl---~rl 1183 (1630)
T 1xi4_A 1113 KAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVET--ELIFALAKT---NRL 1183 (1630)
T ss_pred HHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccH--HHHHHHHhh---cCH
Confidence 4677889999999999764 678889999999999999999999999988744 2232333 355555554 446
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
++..... + .++...+..+...|...|++++|..+|..+ ..|..++.+|.+.|++++|.+.+++.
T Consensus 1184 eele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1184 AELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred HHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 6544332 2 345566677999999999999999999985 58999999999999999999999976
Q ss_pred CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHH
Q 040965 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGA 240 (311)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ 240 (311)
.+..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.. +..|. ...|.-
T Consensus 1248 --~n~~aWkev~~acve~~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftE 1319 (1630)
T 1xi4_A 1248 --NSTRTWKEVCFACVDGKEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 1319 (1630)
T ss_pred --CCHHHHHHHHHHHhhhhHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHH
Confidence 36689999999999999999999876643 224446889999999999999999999887 55543 345555
Q ss_pred HHHHHHh--cCChhHHHHHHHHHHhcCC-----CchhHHHHHHHHHhccchhHHHHH
Q 040965 241 LLGACKI--HGAVDLCHEVGRRLLELQP-----KHCGRYVVLSNIHAGLERWNRATD 290 (311)
Q Consensus 241 l~~~~~~--~g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 290 (311)
|...+++ .++..++.+.|..-....| .....|..+...|.+.|++++|..
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 5555544 4566666666665554444 455689999999999999999984
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=117.06 Aligned_cols=180 Identities=8% Similarity=-0.032 Sum_probs=157.0
Q ss_pred HHHHHHHHHHcc---cchHhhHHHHHHHHHcCCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHH
Q 040965 117 LERAIRVFKSMV---IKDVCTWNAMISSLASNSRE-KEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHS 192 (311)
Q Consensus 117 ~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 192 (311)
+++++..+++.. ..+...+..+...+...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 566666666552 23678899999999999999 99999999998873 33678999999999999999999999999
Q ss_pred hhccCCCccchhhHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc--------CChhH
Q 040965 193 MLGKFEVVPIMEHYGCVVDLLGRA---------GLLSEAKEFMRSM-PFEP-DASVLGALLGACKIH--------GAVDL 253 (311)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------g~~~~ 253 (311)
+++. .|+...+..+...|... |++++|.+.+++. ...| +...|..+...|... |++++
T Consensus 163 al~~---~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH---CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT---CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh---CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 9954 67778899999999999 9999999999998 4445 467788888888888 99999
Q ss_pred HHHHHHHHHhcCC---CchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 254 CHEVGRRLLELQP---KHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 254 a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|...|+++++.+| .++.+|..++.+|...|++++|...|++..+...
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999 8889999999999999999999999999988654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.4e-13 Score=98.50 Aligned_cols=166 Identities=11% Similarity=0.004 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTAC 177 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 177 (311)
...+..+...+...|++++|...++++... +..++..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 456677888899999999999999988543 66788888999999999999999999988763 34677888888999
Q ss_pred HccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCH 255 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 255 (311)
...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998864 2345677888899999999999999999987 3334 5577888888999999999999
Q ss_pred HHHHHHHhcCCCch
Q 040965 256 EVGRRLLELQPKHC 269 (311)
Q Consensus 256 ~~~~~~~~~~~~~~ 269 (311)
..++++.+..|++.
T Consensus 165 ~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 165 PHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHcCCCch
Confidence 99999998877764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-11 Score=102.87 Aligned_cols=232 Identities=6% Similarity=-0.022 Sum_probs=172.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch----HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccC-----Cc
Q 040965 29 WTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE----ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-----VL 99 (311)
Q Consensus 29 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-----~~ 99 (311)
|......+...|++++|+..|+++.+... ..++. ..+..+-.++ ...|+++.|...+++..+... .+
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~a~~~~~lg~~y---~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELP-FVSDDIEKAEFHFKVAEAY---YHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGG-GCCCHHHHHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHh-hCCChHHHHHHHHHHHHHH---HHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 44556677899999999999999987432 11332 2333333322 236779999999988876421 11
Q ss_pred -hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC
Q 040965 100 -SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA 165 (311)
Q Consensus 100 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~ 165 (311)
...+++.+..+|...|++++|++.|++...- ...++..+..+|...|++++|.+.+++..+. +.+.
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 259 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL 259 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence 3567888999999999999999999887431 2457888999999999999999999998761 2233
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCC---ccchhhHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCc-chH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEV---VPIMEHYGCVVDLLGRAGL---LSEAKEFMRSMPFEPDA-SVL 238 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~ 238 (311)
...++..+...+.+.|++++|...+++..+...- +.....+..+...|...++ +.+|...+++.+..|+. ..+
T Consensus 260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 339 (378)
T 3q15_A 260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACA 339 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHH
Confidence 4678888999999999999999999998764222 1123345666677777888 99999999997544443 455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLEL 264 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 264 (311)
..+...|...|++++|...|+++.+.
T Consensus 340 ~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 340 RSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 67778899999999999999998763
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=116.83 Aligned_cols=279 Identities=11% Similarity=0.042 Sum_probs=182.5
Q ss_pred hhhhhcCChHHHHHHHHHhccc-cHHHHHHHHHHHHhcCCH---hHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhh-
Q 040965 3 DGYVKNGDMDSAILLFENMLKR-DVVSWTSIINGFVRNGCF---GEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV- 77 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~- 77 (311)
..+.+.|++++|..+|++..++ ++.++..+...|...|+. ++|.+.|++..+ ..|+ .+..+-..+...+
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~----~~~~--A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD----TSPR--AQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------------CHHHHHHHHHTC--
T ss_pred HHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh----CCHH--HHHHHHHHHHhCCC
Confidence 4567889999999999998554 566777788888888888 999999999975 3233 3333322111211
Q ss_pred -hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh-----------------------------------cC----CH
Q 040965 78 -NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK-----------------------------------VG----CL 117 (311)
Q Consensus 78 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------------------~g----~~ 117 (311)
..++.++|...|++..+.|.+. .+..|...|.. .+ +.
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 1135889999999888765322 33334444433 33 23
Q ss_pred HHHHHHHHHcccchHhhHHHHHHHHHcCC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc----ccHHHHHHHH
Q 040965 118 ERAIRVFKSMVIKDVCTWNAMISSLASNS---REKEALVMFDEMKEKGLRANEITFVAVLTACARA----QLVELGLELF 190 (311)
Q Consensus 118 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~ 190 (311)
+.+..+++.....++..+..+...|...| +.++|++.|++..+.| .++...+..+...|... +++++|..+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 34444555555556778888999999999 9999999999998887 45666666777777655 6899999999
Q ss_pred HHhhccCCCccchhhHHHHHHH-H--HhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcC-----ChhHHHHHHHHHH
Q 040965 191 HSMLGKFEVVPIMEHYGCVVDL-L--GRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHG-----AVDLCHEVGRRLL 262 (311)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~ 262 (311)
++.. . + +...+..|... | ...+++++|.++|++.-...+...+..|...|. .| ++++|..+|+++.
T Consensus 241 ~~aa-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 241 EKIA-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHG-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHc-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 9987 2 3 34466677766 4 468999999999999822336677777777776 56 9999999999988
Q ss_pred hcCCCchhHHHHHHHHHhc----cchhHHHHHHHHHHHHccC
Q 040965 263 ELQPKHCGRYVVLSNIHAG----LERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~ 300 (311)
|.++.++..|+..|.. ..++++|...|++..+.|.
T Consensus 315 ---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 315 ---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp ---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred ---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 7777899999988887 4499999999999887764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-13 Score=117.53 Aligned_cols=164 Identities=15% Similarity=0.175 Sum_probs=141.9
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLT 175 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 175 (311)
-+...++.|..+|.+.|++++|++.|++..+ | +..+|..+..+|.+.|++++|++.|++..+.. +-+...|..+..
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3578899999999999999999999998843 3 67889999999999999999999999998863 235788999999
Q ss_pred HHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChh
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVD 252 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 252 (311)
++...|++++|++.|++.++. .| +...|..+..+|...|++++|++.|++. .+.|+ ...+..+...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 999999999999999999854 44 4678999999999999999999999998 55664 477888999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 040965 253 LCHEVGRRLLELQP 266 (311)
Q Consensus 253 ~a~~~~~~~~~~~~ 266 (311)
+|.+.++++++..|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999887543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=104.56 Aligned_cols=200 Identities=8% Similarity=-0.075 Sum_probs=141.5
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEAL 152 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~ 152 (311)
+++|...+++. +..|...|++++|...|.+...- ...+|+.+..+|...|++++|+
T Consensus 33 ~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 33 FEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 77777777655 45677889999999888877322 2467888899999999999999
Q ss_pred HHHHHHHHc----CCCC-cHHHHHHHHHHHHcc-ccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHHHH
Q 040965 153 VMFDEMKEK----GLRA-NEITFVAVLTACARA-QLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 153 ~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 222 (311)
..+++..+. |-.+ -..++..+...|... |++++|+..|++.++...-..+ ..++..+...|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999887653 2111 135778888888886 9999999999988753110001 34678888999999999999
Q ss_pred HHHHHhC-CCCCCcc--------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh-----HHHHHHHHHh--ccchhH
Q 040965 223 KEFMRSM-PFEPDAS--------VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG-----RYVVLSNIHA--GLERWN 286 (311)
Q Consensus 223 ~~~~~~~-~~~p~~~--------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~ 286 (311)
.+.|++. ...|+.. .+..+..++...|++++|...+++++++.|.... .+..++.++. ..++++
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887 3334321 3566677788899999999999999988887543 2344556664 456788
Q ss_pred HHHHHHHHHH
Q 040965 287 RATDLRKAMV 296 (311)
Q Consensus 287 ~A~~~~~~m~ 296 (311)
+|...|+++.
T Consensus 258 ~A~~~~~~~~ 267 (292)
T 1qqe_A 258 EHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHhccCC
Confidence 8888886553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.7e-12 Score=98.76 Aligned_cols=186 Identities=14% Similarity=0.030 Sum_probs=126.8
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---h---HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC-C-CcHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---D---VCTWNAMISSLASNSREKEALVMFDEMKEKGL-R-ANEITFV 171 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~-~~~~~~~ 171 (311)
+...+..+...+.+.|++++|+..|+++... + ...+..+..+|.+.|++++|...|++..+... . .....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 4455566677777888888888888877433 2 45677777788888888888888888776521 1 1245566
Q ss_pred HHHHHHHc--------cccHHHHHHHHHHhhccCCCccc-hhhH-----------------HHHHHHHHhcCCHHHHHHH
Q 040965 172 AVLTACAR--------AQLVELGLELFHSMLGKFEVVPI-MEHY-----------------GCVVDLLGRAGLLSEAKEF 225 (311)
Q Consensus 172 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----------------~~l~~~~~~~g~~~~A~~~ 225 (311)
.+..++.. .|++++|...|+++++. .|+ .... ..+...|.+.|++++|...
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 66667777 78888888888887754 222 2222 4557788888999999998
Q ss_pred HHhC-CCCCCc----chHHHHHHHHHhc----------CChhHHHHHHHHHHhcCCCchh---HHHHHHHHHhccchhHH
Q 040965 226 MRSM-PFEPDA----SVLGALLGACKIH----------GAVDLCHEVGRRLLELQPKHCG---RYVVLSNIHAGLERWNR 287 (311)
Q Consensus 226 ~~~~-~~~p~~----~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~ 287 (311)
|+++ ...|+. ..+..+..+|... |++++|...++++++..|+++. +...+...+.+.+++++
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhh
Confidence 8887 334442 3456666667655 8889999999999988888753 34445555555555554
Q ss_pred H
Q 040965 288 A 288 (311)
Q Consensus 288 A 288 (311)
+
T Consensus 251 ~ 251 (261)
T 3qky_A 251 D 251 (261)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-11 Score=98.98 Aligned_cols=213 Identities=9% Similarity=-0.082 Sum_probs=152.2
Q ss_pred CHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc----cCCch-HHHHHHHHHHHhhcC
Q 040965 41 CFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN----EIVLS-VFMGTALIDLYGKVG 115 (311)
Q Consensus 41 ~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g 115 (311)
++++|...|++.-. . +...|++++|...+++..+. |.+++ ..+|+.+..+|.+.|
T Consensus 32 ~~~~A~~~~~~a~~-----------------~---~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g 91 (292)
T 1qqe_A 32 KFEEAADLCVQAAT-----------------I---YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91 (292)
T ss_dssp HHHHHHHHHHHHHH-----------------H---HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHH-----------------H---HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC
Confidence 58888888887621 1 11266788998888887664 22222 578889999999999
Q ss_pred CHHHHHHHHHHcccc---------hHhhHHHHHHHHHcC-CCHHHHHHHHHHHHHcCC---CC-c-HHHHHHHHHHHHcc
Q 040965 116 CLERAIRVFKSMVIK---------DVCTWNAMISSLASN-SREKEALVMFDEMKEKGL---RA-N-EITFVAVLTACARA 180 (311)
Q Consensus 116 ~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~~~---~~-~-~~~~~~l~~~~~~~ 180 (311)
++++|+..+++...- -..+++.+...|... |++++|+..|++..+... .+ . ..++..+...+...
T Consensus 92 ~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 999999999887432 145788899999996 999999999999876411 11 1 35688889999999
Q ss_pred ccHHHHHHHHHHhhccCCCccch-----hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc------hHHHHHHHHH--
Q 040965 181 QLVELGLELFHSMLGKFEVVPIM-----EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS------VLGALLGACK-- 246 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~-- 246 (311)
|++++|+..|+++.+...-.+.. ..+..+..++...|++++|...|++. .+.|+.. .+..++.++.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcC
Confidence 99999999999998652111221 15677888899999999999999998 5556532 2334455554
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHH
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYV 273 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (311)
..+++++|...|+++...+|.....+.
T Consensus 252 ~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp CTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 356788888888888777776543333
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.46 E-value=8.7e-11 Score=92.55 Aligned_cols=236 Identities=10% Similarity=0.083 Sum_probs=156.2
Q ss_pred hcCChHHHHHHHHHhcccc-HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH
Q 040965 7 KNGDMDSAILLFENMLKRD-VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85 (311)
Q Consensus 7 ~~g~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a 85 (311)
-.|++..++.-...+...+ ...-.-+.++|...|++... .. -.|....+..+. ... .++ +
T Consensus 25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~--~~~~~~a~~~la----~~~-~~~---a 85 (310)
T 3mv2_B 25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DP--TSKLGKVLDLYV----QFL-DTK---N 85 (310)
T ss_dssp TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CS--SSTTHHHHHHHH----HHH-TTT---C
T ss_pred HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CC--CCHHHHHHHHHH----HHh-ccc---H
Confidence 3577777777554442222 22333456778888877642 11 334433333322 333 211 6
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 86 KQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
...+++....+ +++..++..+..++...|++++|++++.+.+.. +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777665 344455567888888999999999999887433 556777888899999999999999999877
Q ss_pred cCCCC-----cHHHHHHHHHH--HHccc--cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 161 KGLRA-----NEITFVAVLTA--CARAQ--LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 161 ~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
. .| +..+...++.+ ....| +...|..+|+++.+. .|+..+-..+..++...|++++|.+.++.+ .
T Consensus 165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5 56 35555666655 33334 899999999998754 344333344445888899999999998765 2
Q ss_pred C----------CC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 231 F----------EP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 231 ~----------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
. .| |..+...++......|+ +|.++++++.+..|+++
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 2 14 44555466666666776 88899999999999887
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-11 Score=93.13 Aligned_cols=185 Identities=11% Similarity=-0.006 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHccc--ch----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-Cc-HHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVI--KD----VCTWNAMISSLASNSREKEALVMFDEMKEKGLR-AN-EITFVA 172 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~-~~~~~~ 172 (311)
...+..+...+.+.|++++|+..|+++.. |+ ...+..+..+|.+.|++++|+..|+++.+.... +. ...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34555677788889999999999998853 32 346777888899999999999999998876322 11 124444
Q ss_pred HHHHHHc------------------cccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 040965 173 VLTACAR------------------AQLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSEAKEFMRSMPFEP 233 (311)
Q Consensus 173 l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p 233 (311)
+..++.. .|+.++|...|+++++. .|+. ..+......- .......
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~~~~--------- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKDRLA--------- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHHHHH---------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHHHHH---------
Confidence 5555543 45677777777777653 2322 1221111100 0000000
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch---hHHHHHHHHHhccchhHHHHHHHHHHHHccCCCC
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC---GRYVVLSNIHAGLERWNRATDLRKAMVEAGIRKI 303 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 303 (311)
.....+...+...|++++|...|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+....
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 0112455678899999999999999999998875 5688999999999999999999999988766543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-11 Score=96.89 Aligned_cols=172 Identities=10% Similarity=0.003 Sum_probs=139.3
Q ss_pred cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hh
Q 040965 129 IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN---EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-ME 204 (311)
Q Consensus 129 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~ 204 (311)
..+...+..+...+.+.|++++|...|+++.+.. +.+ ...+..+..++...|++++|...|+++++...-.|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 3466777788889999999999999999998863 223 678888899999999999999999999875222222 45
Q ss_pred hHHHHHHHHHh--------cCCHHHHHHHHHhC-CCCCCc-chH-----------------HHHHHHHHhcCChhHHHHH
Q 040965 205 HYGCVVDLLGR--------AGLLSEAKEFMRSM-PFEPDA-SVL-----------------GALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 205 ~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~g~~~~a~~~ 257 (311)
.+..+..++.. .|++++|.+.|+++ ...|+. ... ..+...|...|++++|...
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 67778888888 99999999999998 334543 333 3456778999999999999
Q ss_pred HHHHHhcCCCc---hhHHHHHHHHHhcc----------chhHHHHHHHHHHHHccCC
Q 040965 258 GRRLLELQPKH---CGRYVVLSNIHAGL----------ERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 258 ~~~~~~~~~~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~ 301 (311)
|+++++..|++ ..++..++.+|... |++++|...|+++.+..+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 99999998884 45788899999876 9999999999999886543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.42 E-value=7.5e-11 Score=92.90 Aligned_cols=241 Identities=9% Similarity=-0.023 Sum_probs=167.4
Q ss_pred HHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHh
Q 040965 33 INGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYG 112 (311)
Q Consensus 33 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (311)
++-..-.|++..++.-...+.. ..++. .-....+++..+++ +... ....|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~----~~~~~-~~~~~~Rs~iAlg~---~~~~---------~~~~~~~~a~~~la~~~- 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK----VTDNT-LLFYKAKTLLALGQ---YQSQ---------DPTSKLGKVLDLYVQFL- 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC----CCCHH-HHHHHHHHHHHTTC---CCCC---------CSSSTTHHHHHHHHHHH-
T ss_pred HHHHHHhhHHHHHHHHHHhcCc----cchHH-HHHHHHHHHHHcCC---CccC---------CCCCHHHHHHHHHHHHh-
Confidence 3445667999988884444322 22332 22223344444442 3321 12234444444444443
Q ss_pred hcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHccccHHHHHH
Q 040965 113 KVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLR-ANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 113 ~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
..+ |+..|++... ++..++..+..++...|++++|++++.+....+.. -+...+...+..+.+.|+.+.|.+
T Consensus 82 ~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k 157 (310)
T 3mv2_B 82 DTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTAST 157 (310)
T ss_dssp TTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 322 7788887753 45566678889999999999999999998766531 366788888999999999999999
Q ss_pred HHHHhhccCCCcc-----chhhHHHHHHHH--HhcC--CHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 040965 189 LFHSMLGKFEVVP-----IMEHYGCVVDLL--GRAG--LLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVG 258 (311)
Q Consensus 189 ~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 258 (311)
.+++|.+ ..| +..+...|+.++ ...| ++++|..+|+++ ...|+..+-..++.++...|++++|...+
T Consensus 158 ~l~~~~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 158 IFDNYTN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence 9999974 466 345666666663 3334 999999999999 44565334445555889999999999999
Q ss_pred HHHHhc----------CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 259 RRLLEL----------QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 259 ~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+.+.+. +|+++.++..++......|+ +|.++++++.+..+
T Consensus 235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 988765 58898888888777777786 89999999988654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1.6e-11 Score=96.84 Aligned_cols=220 Identities=11% Similarity=0.031 Sum_probs=147.4
Q ss_pred hhhcCChHHHHHHHHHhcc----------c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCC----CCCc-hHHHHH
Q 040965 5 YVKNGDMDSAILLFENMLK----------R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNL----VRPN-EATYVS 68 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~p~-~~~~~~ 68 (311)
....|++++|+..|++... | ...++..+...|...|++++|+..++++.+.... -.|. ...+..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3456788888888877732 1 3568899999999999999999999998763100 1232 233444
Q ss_pred HHHHhhhhhhcCcchhHHHHHHHHhhcc-------CCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------
Q 040965 69 VLSSCAGLVNEGGLYLGKQVHGYILRNE-------IVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK----------- 130 (311)
Q Consensus 69 ll~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------- 130 (311)
+...+ ...|++++|...+++..+.. .+....++..+..+|...|++++|...++++...
T Consensus 91 l~~~~---~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 167 (283)
T 3edt_B 91 LAVLY---GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN 167 (283)
T ss_dssp HHHHH---HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHH---HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 44333 33777999999999887751 1334678888999999999999999999887322
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-------CCCCc-HHHHHHHHHHHHcccc------HHHHHHHHHHhhcc
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEK-------GLRAN-EITFVAVLTACARAQL------VELGLELFHSMLGK 196 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~ 196 (311)
...++..+...+...|++++|...+++..+. ...+. ...+..+.......+. +..+...++....
T Consensus 168 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 246 (283)
T 3edt_B 168 VAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV- 246 (283)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-
Confidence 3567888999999999999999999998753 11222 2233333333333222 3333333333322
Q ss_pred CCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 197 FEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
..+....++..+...|...|++++|.+++++.
T Consensus 247 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 247 -DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12334567888999999999999999999875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-11 Score=85.37 Aligned_cols=128 Identities=17% Similarity=0.159 Sum_probs=79.5
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHh
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALLGACKI 247 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~ 247 (311)
+..+...+...|++++|..+++++.+. .+.+...+..++..+...|++++|.++++++ ... .+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 344455555555666666665555532 1223344555555566666666666666555 212 233455566666777
Q ss_pred cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 248 HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 248 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...++++.+..|.+..++..++.++.+.|++++|...++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 7777777777777777777766677777777777788888887777776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.36 E-value=7.3e-12 Score=111.44 Aligned_cols=168 Identities=10% Similarity=-0.050 Sum_probs=142.8
Q ss_pred hhcCCHHHHHHHHHHcc-----------cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 112 GKVGCLERAIRVFKSMV-----------IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 112 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
...|++++|++.+++.. ..+...+..+..++...|++++|++.|++..+.. +-+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 77899999999999887 3366788889999999999999999999998763 33678889999999999
Q ss_pred ccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHH
Q 040965 181 QLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~ 257 (311)
|++++|...|+++++. .| +...+..+..+|.+.|++++ .+.|++. ...| +...+..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999864 44 45678899999999999999 9999988 4455 457788888999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 258 GRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
|+++.+.+|.+..++..++.++...++
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999998899999999877554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.1e-11 Score=94.69 Aligned_cols=177 Identities=11% Similarity=-0.019 Sum_probs=141.9
Q ss_pred HHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 117 LERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 117 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
.+.....+......+...+..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...++++...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3455556666666677778888899999999999999999998873 336778888999999999999999999998754
Q ss_pred CCCccchhhHHH-HHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--hhH
Q 040965 197 FEVVPIMEHYGC-VVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH--CGR 271 (311)
Q Consensus 197 ~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 271 (311)
.|+...... ....+...++.++|.+.+++. ...| +...+..+...+...|++++|...|+++++.+|++ ..+
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 455433322 233466778888888888887 4445 55778888889999999999999999999999987 778
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
+..++..+...|+.++|...+++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999998887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.34 E-value=5.2e-11 Score=82.72 Aligned_cols=131 Identities=18% Similarity=0.195 Sum_probs=89.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHH
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLL 213 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 213 (311)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|...++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 45566667777777777777777776653 235566666777777777777777777777653 123445666677777
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 214 GRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 214 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 7777777777777776 2223 4556666777777888888888888887777664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.4e-11 Score=88.78 Aligned_cols=127 Identities=8% Similarity=-0.016 Sum_probs=96.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhc
Q 040965 138 MISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRA 216 (311)
Q Consensus 138 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 216 (311)
+..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++++. .| +..++..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999988873 336788899999999999999999999999864 44 466788888887666
Q ss_pred CC--HHHHHHHHHhCCCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 217 GL--LSEAKEFMRSMPFEPDA--SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 217 g~--~~~A~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
|+ ...+...++... .|+. ..+.....++...|++++|...|+++++..|++.
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 54 445666676663 3333 2334445566778999999999999999999753
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=5.3e-12 Score=90.13 Aligned_cols=142 Identities=11% Similarity=-0.033 Sum_probs=91.1
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG 217 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 217 (311)
...+...|++++|++.++..... .| +...+..+...|.+.|++++|+..|++.++. .+-+..+|..+..+|...|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34445556666666666654432 22 2334455666677777777777777776643 1224556777777777777
Q ss_pred CHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHH-HHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 218 LLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHE-VGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 218 ~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
++++|...|++. .+.|+ ...+..+...|...|++++|.. +++++++++|+++.+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777777776 44453 4567777777888888776554 4588888888888888777777776664
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-11 Score=104.33 Aligned_cols=160 Identities=11% Similarity=0.011 Sum_probs=119.8
Q ss_pred cCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHH
Q 040965 114 VGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELF 190 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 190 (311)
.|++++|++.++++... +...|..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47889999999888433 56788889999999999999999999988763 336788888999999999999999999
Q ss_pred HHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc---CChhHHHHHHHHHHhcC
Q 040965 191 HSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIH---GAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 265 (311)
++.++. .+.+...+..+..+|...|++++|.+.+++. ...| +...+..+...+... |++++|...++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999864 2334678888999999999999999999988 4445 456778888888888 99999999999999999
Q ss_pred CCchhHHHHHH
Q 040965 266 PKHCGRYVVLS 276 (311)
Q Consensus 266 ~~~~~~~~~l~ 276 (311)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 98877776665
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-10 Score=86.18 Aligned_cols=178 Identities=7% Similarity=-0.114 Sum_probs=116.1
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-hHhhHHHHHHHHHcCC----CHHHHHHHHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMISSLASNS----REKEALVMFDE 157 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 157 (311)
.+|.+.|++..+.| ++..+..+...|...+++++|+..|++.... ++..+..+...|.. + ++++|.++|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 45677777777665 4556667777787788888888888877544 56667777777776 5 78888888887
Q ss_pred HHHcCCCCcHHHHHHHHHHHHc----cccHHHHHHHHHHhhccCCCc-cchhhHHHHHHHHHh----cCCHHHHHHHHHh
Q 040965 158 MKEKGLRANEITFVAVLTACAR----AQLVELGLELFHSMLGKFEVV-PIMEHYGCVVDLLGR----AGLLSEAKEFMRS 228 (311)
Q Consensus 158 m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 228 (311)
..+.| +...+..+...|.. .+++++|..+|++..+. +.. .++..+..|...|.. .+++++|.++|++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 76654 45566666666665 66777888888777754 221 124566667777766 5667777777776
Q ss_pred C-CCCCCcchHHHHHHHHHhc-C-----ChhHHHHHHHHHHhcCCCc
Q 040965 229 M-PFEPDASVLGALLGACKIH-G-----AVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 229 ~-~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~~~ 268 (311)
. ...++...+..|...|..- | ++++|..+|+++.+.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 6 2224445555555555432 2 6677777777766665433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.30 E-value=6.7e-10 Score=84.05 Aligned_cols=173 Identities=8% Similarity=-0.085 Sum_probs=129.5
Q ss_pred HHHHHHHHccc-chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc----cHHHHHHHHHHh
Q 040965 119 RAIRVFKSMVI-KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ----LVELGLELFHSM 193 (311)
Q Consensus 119 ~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~ 193 (311)
+|++.|++..+ .++.++..+...|...+++++|.++|++..+.| +...+..+...|.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 35556665543 367778888888888889999999998888765 45666777777776 6 888999998888
Q ss_pred hccCCCccchhhHHHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHHh----cCChhHHHHHHHHH
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGR----AGLLSEAKEFMRSM-PFEPD---ASVLGALLGACKI----HGAVDLCHEVGRRL 261 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 261 (311)
.+. + +...+..|...|.. .+++++|.++|++. ...|. ...+..|...|.. .+++++|..+|+++
T Consensus 80 ~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 654 3 44567777777776 78889999988887 43342 6777777777777 77888999999988
Q ss_pred HhcCCCchhHHHHHHHHHhcc-c-----hhHHHHHHHHHHHHccC
Q 040965 262 LELQPKHCGRYVVLSNIHAGL-E-----RWNRATDLRKAMVEAGI 300 (311)
Q Consensus 262 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 300 (311)
.+. |.++.++..|..+|... | ++++|...|++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 877 44455777888887653 3 78889998888887764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.1e-11 Score=95.23 Aligned_cols=220 Identities=11% Similarity=-0.021 Sum_probs=149.5
Q ss_pred hcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCH
Q 040965 38 RNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCL 117 (311)
Q Consensus 38 ~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 117 (311)
..|++++|.+++++..+.. +.. + ... .++++.|...|.+. ...|...|++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~----~~~-----~----~~~--~~~~~~A~~~~~~a---------------~~~~~~~g~~ 52 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL----KTS-----F----MKW--KPDYDSAASEYAKA---------------AVAFKNAKQL 52 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH----CCC-----S----SSC--SCCHHHHHHHHHHH---------------HHHHHHTTCH
T ss_pred ccchHHHHHHHHHHHHHHc----ccc-----c----cCC--CCCHHHHHHHHHHH---------------HHHHHHcCCH
Confidence 4577888888888887643 211 0 010 34466666666543 5567788999
Q ss_pred HHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---CCCc--HHHHHHHHHHHHccccH
Q 040965 118 ERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEKG---LRAN--EITFVAVLTACARAQLV 183 (311)
Q Consensus 118 ~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~--~~~~~~l~~~~~~~~~~ 183 (311)
++|...|.+...- -..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+...|.. |++
T Consensus 53 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~ 131 (307)
T 2ifu_A 53 EQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDL 131 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCH
Confidence 9999888877322 24578888889999999999999998876431 1222 3567788888888 999
Q ss_pred HHHHHHHHHhhccCC---Ccc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC---CC----cchHHHHHHHHHhcCCh
Q 040965 184 ELGLELFHSMLGKFE---VVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE---PD----ASVLGALLGACKIHGAV 251 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~g~~ 251 (311)
++|+..|++.++... ..+ ...++..+...|.+.|++++|.+.|++. .+. ++ ...+..+...+...|++
T Consensus 132 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 211 (307)
T 2ifu_A 132 SKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCH
Confidence 999999998875311 111 1456788889999999999999999887 211 11 12455556667778999
Q ss_pred hHHHHHHHHHHhcCCCchh-----HHHHHHHHHhccchhHHHHH
Q 040965 252 DLCHEVGRRLLELQPKHCG-----RYVVLSNIHAGLERWNRATD 290 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~ 290 (311)
++|...|++++ ..|.... ....++.++ ..|+.+.+..
T Consensus 212 ~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 212 VAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999999 8886432 233455555 4555555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-10 Score=85.72 Aligned_cols=171 Identities=13% Similarity=0.017 Sum_probs=119.4
Q ss_pred hcCcchhHHHHHHHHhhccCCc--hHHHHHHHHHHHhhcCCHHHHHHHHHHccc--ch-H---hhHHHHHHHHHc-----
Q 040965 78 NEGGLYLGKQVHGYILRNEIVL--SVFMGTALIDLYGKVGCLERAIRVFKSMVI--KD-V---CTWNAMISSLAS----- 144 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~----- 144 (311)
+.|++++|...|+++++..+.. ....+..+..+|.+.|++++|+..|+++.. |+ . .++..+..++..
T Consensus 16 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~ 95 (225)
T 2yhc_A 16 QDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSA 95 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhh
Confidence 4788999999999999864322 245777889999999999999999999844 32 1 245555655553
Q ss_pred -------------CCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 145 -------------NSREKEALVMFDEMKEKGLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 145 -------------~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
.|++++|...|+++.+. .|+ ...+..... .+. +...+. .....+.
T Consensus 96 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----l~~------~~~~~~---------~~~~~~a 154 (225)
T 2yhc_A 96 LQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----LVF------LKDRLA---------KYEYSVA 154 (225)
T ss_dssp ------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----HHH------HHHHHH---------HHHHHHH
T ss_pred hhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----HHH------HHHHHH---------HHHHHHH
Confidence 68999999999999876 343 222222111 000 001110 1123456
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
..|.+.|++++|...|+++ ...|+. ..+..+..++.+.|++++|...++.+....|++.
T Consensus 155 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 155 EYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 7788899999999999887 444553 3566777888999999999999998888877754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-10 Score=100.69 Aligned_cols=152 Identities=9% Similarity=-0.089 Sum_probs=107.1
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|.+.+++..+.. +.+...+..+...|...|++++|++.+++.... +...+..+..+|...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356888999998888764 335678888889999999999999999888433 5678888889999999999999999
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc---CCHHHHHHHHHhC-CC
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA---GLLSEAKEFMRSM-PF 231 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~ 231 (311)
++..+.. +.+...+..+..++...|++++|...+++..+. .+.+...+..+..++... |++++|.+.+++. ..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9988763 336778888888999999999999999998864 223456788888888888 9999999998887 33
Q ss_pred CCC
Q 040965 232 EPD 234 (311)
Q Consensus 232 ~p~ 234 (311)
.|+
T Consensus 158 ~p~ 160 (568)
T 2vsy_A 158 GVG 160 (568)
T ss_dssp TCC
T ss_pred CCc
Confidence 343
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-11 Score=86.28 Aligned_cols=126 Identities=12% Similarity=-0.021 Sum_probs=105.2
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHG 249 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 249 (311)
|...+...|++++|+..+...... .| +...+..+...|.+.|++++|.+.|++. .+.| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 445667889999999999998753 44 4566778999999999999999999998 5556 5578888889999999
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHH-HHHHHHccCC
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDL-RKAMVEAGIR 301 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~~~~ 301 (311)
++++|...|+++++.+|+++.++..++.+|.+.|++++|.+. +++..+..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~ 132 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG 132 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC
Confidence 999999999999999999999999999999999999887765 5887776543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.1e-11 Score=87.44 Aligned_cols=56 Identities=11% Similarity=-0.010 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
..+...+.+.|++++|+..|+++... +...+..+...+...|++++|...+++...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 34455555566666666666655322 344555555555566666666666555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-10 Score=101.49 Aligned_cols=167 Identities=8% Similarity=-0.095 Sum_probs=136.1
Q ss_pred cCcchhHHHHHHHHh--------hccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCC
Q 040965 79 EGGLYLGKQVHGYIL--------RNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSR 147 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~ 147 (311)
.|++++|.+.+++.. +.. +.+...+..+..+|.+.|++++|++.|+++.+. +...|..+..++...|+
T Consensus 404 ~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 404 LSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp TCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCC
Confidence 778999999999998 432 445678888999999999999999999998543 67789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHH
Q 040965 148 EKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMR 227 (311)
Q Consensus 148 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 227 (311)
+++|.+.|++..+.. +-+...+..+..++.+.|++++ ...|+++++. .+.+...|..+..++.+.|++++|.+.|+
T Consensus 483 ~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 483 YDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998873 2356788899999999999999 9999999864 22345788999999999999999999999
Q ss_pred hC-CCCCCc-chHHHHHHHHHhcCC
Q 040965 228 SM-PFEPDA-SVLGALLGACKIHGA 250 (311)
Q Consensus 228 ~~-~~~p~~-~~~~~l~~~~~~~g~ 250 (311)
+. ...|+. ..+..+..++...++
T Consensus 559 ~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 559 EVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TSCTTSTTHHHHHHHHHHHTC----
T ss_pred hhcccCcccHHHHHHHHHHHHccCC
Confidence 98 667764 566666666655444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-09 Score=86.60 Aligned_cols=164 Identities=12% Similarity=0.009 Sum_probs=109.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHccccHHHHHHHHHHhhccCC--Cccc--h
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANE-----ITFVAVLTACARAQLVELGLELFHSMLGKFE--VVPI--M 203 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 203 (311)
..+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++.++... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777888888888888777664322111 2233455556777888888888887764311 1111 3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------c
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPD-----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------H 268 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~ 268 (311)
.+++.+...|...|++++|.+.+++. ...|+ ..++..+...|...|++++|...++++++..+. .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46777888888888888888888776 11222 146677777888888888888888888764322 1
Q ss_pred hhHHHHHHHHHhccchhHHH-HHHHHHHH
Q 040965 269 CGRYVVLSNIHAGLERWNRA-TDLRKAMV 296 (311)
Q Consensus 269 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 296 (311)
..+|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45778888888888888888 66676654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.3e-10 Score=83.92 Aligned_cols=189 Identities=12% Similarity=0.048 Sum_probs=130.1
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
++..+......+...|++++|+..|++..+ ..|+......... ..+. ........
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~~~----~~~~-----------------~~~~~~~~ 57 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIA----LNIDRTEMYYWTN----VDKN-----------------SEISSKLA 57 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCHHHHHHHHHHH----SCTT-----------------SHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCChHHHHHhh----hcch-----------------hhhhHHHH
Confidence 344556667788888999999999999887 5566543222211 0000 01123334
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
+.+..+|.+.|++++|+..|++... | +...+..+..++...|++++|...|++..+.. +-+..++..+..++...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 5688899999999999999998843 3 67788899999999999999999999998863 336778888888876665
Q ss_pred c--HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHH
Q 040965 182 L--VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALL 242 (311)
Q Consensus 182 ~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 242 (311)
+ .+.+...++... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4 445566666654 23344334555666777889999999999987 7778765444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-10 Score=83.40 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=80.9
Q ss_pred hhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcC
Q 040965 4 GYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEG 80 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 80 (311)
.+.+.|++++|+..|++... | +...+..+..++.+.|++++|+..|++..+ ..|+. .+..+...+.... .+
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~----~~p~~-~~~~~~~~~~~~~-~~ 88 (176)
T 2r5s_A 15 ELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL----EYQDN-SYKSLIAKLELHQ-QA 88 (176)
T ss_dssp HHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG----GGCCH-HHHHHHHHHHHHH-HH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh----ccCCh-HHHHHHHHHHHHh-hc
Confidence 45677778888887777643 2 556777777777778888888877777765 33432 2222221111111 11
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccch-----HhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKD-----VCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
....+...+++.++.. +.+...+..+..++...|++++|...|+++...+ ...+..+...+...|+.++|...|
T Consensus 89 ~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1233455555555543 2234555555555666666666666655553221 234555555555555555555555
Q ss_pred HHH
Q 040965 156 DEM 158 (311)
Q Consensus 156 ~~m 158 (311)
++.
T Consensus 168 ~~a 170 (176)
T 2r5s_A 168 RRQ 170 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-09 Score=81.91 Aligned_cols=132 Identities=8% Similarity=-0.033 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL 182 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 182 (311)
.+..+...+...|++++|+..|++...++...|..+..++...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 345567778888899999999988887788888888888888899999999888887763 3366778888888888889
Q ss_pred HHHHHHHHHHhhccCCC-------------cc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 183 VELGLELFHSMLGKFEV-------------VP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~-------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
+++|...|+++.+...- .| ....+..+..+|...|++++|.+.|++. ...|+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99998888888764111 11 1245666666777777777777777666 444543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.19 E-value=3.3e-09 Score=84.46 Aligned_cols=161 Identities=11% Similarity=-0.011 Sum_probs=114.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCC-CCcH----HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHH
Q 040965 137 AMISSLASNSREKEALVMFDEMKEKGL-RANE----ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYG 207 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 207 (311)
..+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|...++++++...-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677788888888888888776421 2222 12334666677778889999988888763111222 23578
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-----CCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------chhHH
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM-----PFEPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPK------HCGRY 272 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~ 272 (311)
.+...|...|++++|.+.|+++ ....+ ..++..+...|...|++++|...++++++..+. -..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888999999988888776 11111 136677788899999999999999998874322 25688
Q ss_pred HHHHHHHhccch-hHHHHHHHHHHHH
Q 040965 273 VVLSNIHAGLER-WNRATDLRKAMVE 297 (311)
Q Consensus 273 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 297 (311)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999994 6999999888764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.9e-10 Score=87.80 Aligned_cols=162 Identities=9% Similarity=-0.041 Sum_probs=131.9
Q ss_pred CchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHH-HHH
Q 040965 98 VLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITF-VAV 173 (311)
Q Consensus 98 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l 173 (311)
+.+...+..+...+.+.|++++|+..|+++.. | +...+..+...+.+.|++++|...++++... .|+.... ...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 55667778889999999999999999999843 3 6678899999999999999999999998765 3444333 333
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHHhcC
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---ASVLGALLGACKIHG 249 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g 249 (311)
...+...++.+.|...+++.... .+.+...+..+...|...|++++|.+.|+++ ...|+ ...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 33477888889999999998864 2345678899999999999999999999998 44554 567888999999999
Q ss_pred ChhHHHHHHHHHHh
Q 040965 250 AVDLCHEVGRRLLE 263 (311)
Q Consensus 250 ~~~~a~~~~~~~~~ 263 (311)
+.++|...+++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 99999999988764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.17 E-value=4.1e-10 Score=89.15 Aligned_cols=192 Identities=8% Similarity=-0.075 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
+...+..+...+.+.|++++|+..|++... | +...|..+..+|.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 456677788899999999999999998843 3 67788889999999999999999999988763 3367788888999
Q ss_pred HHccccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHH
Q 040965 177 CARAQLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH 255 (311)
Q Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 255 (311)
+...|++++|...|++..+. .|+. ..+...+....+..+...... .......++......+ ..+ ..|+.++|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHHHHH
Confidence 99999999999999998753 3321 122222222222111111111 2222333344443333 333 378999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHhcc-chhHHHHHHHHHHHHc
Q 040965 256 EVGRRLLELQPKHCGRYVVLSNIHAGL-ERWNRATDLRKAMVEA 298 (311)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 298 (311)
+.++++.+.+|++......+...+.+. +.+++|.++|.+..+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999998876666777667666 7789999999887653
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.3e-08 Score=79.39 Aligned_cols=211 Identities=10% Similarity=0.075 Sum_probs=115.3
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC--CHHHHHHHHHHcccc---hHhhHHHHHHHH----HcC---CCHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG--CLERAIRVFKSMVIK---DVCTWNAMISSL----ASN---SREKE 150 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l~~~~----~~~---~~~~~ 150 (311)
++|+++.+.++... +-+..+|+.-..++...| +++++++.++.+... +..+|+.-...+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45666666666554 223445555555555555 666666666666332 233343333222 233 56666
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH--HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC------HHHH
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVE--LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL------LSEA 222 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A 222 (311)
++++++++.+.. +-+..+|+.-.-.+.+.|.++ +++++++++++. .+-|...|+.-...+...+. ++++
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 666666666553 225555555555555556555 666666666643 12244455544444445554 6666
Q ss_pred HHHHHhC-CCCC-CcchHHHHHHHHHhcCCh-hHHHHHHHHHHhcC---CCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 223 KEFMRSM-PFEP-DASVLGALLGACKIHGAV-DLCHEVGRRLLELQ---PKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 223 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
++.++++ ...| |...|+.+...+.+.|+. +.+..+..++.+.+ |.++.++..++.+|.+.|+.++|.++++.+.
T Consensus 206 l~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 206 LNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 6666655 2233 445555555555555553 33445555555544 5555566666666666666666776666665
Q ss_pred H
Q 040965 297 E 297 (311)
Q Consensus 297 ~ 297 (311)
+
T Consensus 286 ~ 286 (306)
T 3dra_A 286 S 286 (306)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.6e-09 Score=83.73 Aligned_cols=127 Identities=7% Similarity=-0.032 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NE 167 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 167 (311)
.+|+.+..+|.+.|++++|+..|++...- -..++..+...|.. |++++|++.|++..+. +..+ ..
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 34555555555555555555555544211 12345555555555 6666666666655432 1000 12
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccC---CCccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKF---EVVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.++..+...+...|++++|+..|++.++.. +..+. ...+..++.++...|++++|.+.|++.
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555566666666666666666555321 11111 124445555555566666666666554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.2e-09 Score=81.02 Aligned_cols=131 Identities=9% Similarity=-0.100 Sum_probs=110.0
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
...+..+...+...|++++|.+.|++. +.|+...+..+...+...|++++|...+++.++. .+.+...+..+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHH
Confidence 344566788888999999999999876 3668889999999999999999999999999864 2335678889999
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC-c----------------chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 212 LLGRAGLLSEAKEFMRSM-PFEPD-A----------------SVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-~~~p~-~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
+|...|++++|.+.|++. ...|+ . ..+..+...+...|++++|...++++.+..|.+
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999887 32332 2 567778888999999999999999999999876
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-08 Score=76.96 Aligned_cols=234 Identities=10% Similarity=0.040 Sum_probs=170.2
Q ss_pred HHhcCCH-hHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH--
Q 040965 36 FVRNGCF-GEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY-- 111 (311)
Q Consensus 36 ~~~~g~~-~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 111 (311)
..+.|.+ ++|+++++.++. +.|+..| |+.--.+...++ ..+++++++.++.++...+ .+..+|+.-..++
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~----~nP~~~taWn~R~~~L~~l~-~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 42 LMKAEEYSERALHITELGIN----ELASHYTIWIYRFNILKNLP-NRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHTCT-TSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHH----HCcHHHHHHHHHHHHHHHcc-cccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHH
Confidence 3344444 689999999988 6677655 333332222222 0369999999999998763 3555665554444
Q ss_pred --hhc---CCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 112 --GKV---GCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREK--EALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 112 --~~~---g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
... +++++++++++++... +..+|+.-...+.+.|.++ ++++.++++.+... -|...|+.-...+...+
T Consensus 116 ~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 116 IMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp HHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSG
T ss_pred HHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcc
Confidence 444 7899999999998544 5567777677777788888 99999999998753 37778877777777777
Q ss_pred c------HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH-HHHHHHhC-CC----CCCcchHHHHHHHHHhcC
Q 040965 182 L------VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE-AKEFMRSM-PF----EPDASVLGALLGACKIHG 249 (311)
Q Consensus 182 ~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g 249 (311)
. ++++++.+++++.. .+-|...|+.+...+.+.|+... +.++.+++ .. ..+...+..+...+.+.|
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~ 272 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQK 272 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTT
T ss_pred ccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccC
Confidence 6 89999999998864 24466788888888888887444 55677766 22 235577788888899999
Q ss_pred ChhHHHHHHHHHHh-cCCCchhHHHHHHHH
Q 040965 250 AVDLCHEVGRRLLE-LQPKHCGRYVVLSNI 278 (311)
Q Consensus 250 ~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~ 278 (311)
+.++|.++++.+.+ .+|.....|...+..
T Consensus 273 ~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 273 KYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp CHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 99999999999996 799988777766543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-09 Score=84.62 Aligned_cols=163 Identities=7% Similarity=-0.087 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---CCc--
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEKGL---RAN-- 166 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~~-- 166 (311)
...+...+..+...|++++|.+.+.+.... ....+..+...+...|++++|...+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 445566788899999999999999876321 123345566778889999999999999875321 222
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhcc---CCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC------
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGK---FEVVP--IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD------ 234 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------ 234 (311)
..+++.+...|...|++++|...++++++. .+..+ ...++..+...|...|++++|.+.+++. .+.++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 458889999999999999999999998732 11122 2257888999999999999999999887 11111
Q ss_pred -cchHHHHHHHHHhcCChhHH-HHHHHHHHh
Q 040965 235 -ASVLGALLGACKIHGAVDLC-HEVGRRLLE 263 (311)
Q Consensus 235 -~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 263 (311)
..+|..+...|...|++++| ...++++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 45677788889999999999 888998875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-09 Score=75.62 Aligned_cols=109 Identities=6% Similarity=-0.113 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+......+.+.|++++|+..|++.++. .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 45555666677777777777777776643 1224556666677777777777777777666 3333 345666666777
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
...|++++|...|+++++++|++..++..|..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 777777777777777777777777666655543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-09 Score=77.24 Aligned_cols=128 Identities=9% Similarity=-0.046 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+..+...+...|+++.|...|++..+. .+.+..++..+..++...|++++|.+.+++. ...| +...+..+...+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34556666677777777777777777653 2234566777777788888888888888776 3334 456677777888
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHH--HHHHhccchhHHHHHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVL--SNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
...|++++|...++++.+..|.+...+..+ +..+.+.|++++|...+.+...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 899999999999999999999887777444 4447788999999999887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.9e-10 Score=80.16 Aligned_cols=97 Identities=11% Similarity=0.099 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++.+|+++.+|..++.+|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 345555666666666666666666666 3334 34555566666666677777777777777777766666667777777
Q ss_pred ccchhHHHHHHHHHHHHcc
Q 040965 281 GLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~ 299 (311)
+.|++++|...|++..+..
T Consensus 116 ~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 7777777777776666543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.8e-08 Score=80.23 Aligned_cols=160 Identities=7% Similarity=-0.068 Sum_probs=122.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc-----h----HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCC-Cc----HHH
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK-----D----VCTWNAMISSLASNSREKEALVMFDEMKEKGLR-AN----EIT 169 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~ 169 (311)
+...+..+...|++++|...+++.... + ...+..+...+...|++++|+..+++..+.... ++ ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344577889999999999999987432 2 123445777788889999999999999874222 22 346
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccC----CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-cc
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKF----EVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-------PFEPD-AS 236 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~ 236 (311)
++.+...|...|++++|..+|+++++.. +..+ ...++..+...|.+.|++++|.+.+++. +..+. ..
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8899999999999999999999988421 1222 2347888999999999999999998877 21222 46
Q ss_pred hHHHHHHHHHhcCC-hhHHHHHHHHHHh
Q 040965 237 VLGALLGACKIHGA-VDLCHEVGRRLLE 263 (311)
Q Consensus 237 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~ 263 (311)
+|..+...+...|+ +++|...++++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 67788888999995 6999999999886
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-09 Score=87.87 Aligned_cols=126 Identities=12% Similarity=0.023 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----------------hhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----------------MEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
..+..+...+.+.|++++|...|++.++. .|+ ...|..+..+|.+.|++++|.+.+++. .
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555555432 222 357888888899999999999998887 3
Q ss_pred CCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHH-HHHHHHHH
Q 040965 231 FEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRA-TDLRKAMV 296 (311)
Q Consensus 231 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 296 (311)
..| +...+..+..+|...|++++|...|+++++..|++..++..+..++.+.|++++| ...++.|.
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 5677888888999999999999999999999999988999999999999999988 44666664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.6e-09 Score=74.55 Aligned_cols=103 Identities=10% Similarity=0.084 Sum_probs=91.3
Q ss_pred Cccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 199 VVPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 199 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|++..+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4554 366788899999999999999999998 4445 567888888999999999999999999999999999999999
Q ss_pred HHHHhccchhHHHHHHHHHHHHccCC
Q 040965 276 SNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 276 ~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+.+|...|++++|.+.|++..+..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~ 113 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPS 113 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999886543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-08 Score=89.42 Aligned_cols=216 Identities=8% Similarity=-0.064 Sum_probs=162.8
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHH-HHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 040965 85 GKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI-RVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKE 160 (311)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 160 (311)
+..+|++.+..- +-+..+|...+..+...|+.++|. ++|++... .+...|...+...-+.|++++|.++|+++.+
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456677777653 446777888888888899999997 99988843 3555677788888899999999999999876
Q ss_pred cC---------CCC------------cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-CC
Q 040965 161 KG---------LRA------------NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA-GL 218 (311)
Q Consensus 161 ~~---------~~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 218 (311)
.. ..| ....|...+....+.|..+.|..+|.++++.. ..+....|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCC
Confidence 41 013 23467888888888999999999999998641 112233444333333344 45
Q ss_pred HHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC---chhHHHHHHHHHhccchhHHHHHHHH
Q 040965 219 LSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK---HCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 219 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.+.|..+|+.. ...| +...+...+......|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999988 3234 4455567777778899999999999999997773 45688888999999999999999999
Q ss_pred HHHHccCCC
Q 040965 294 AMVEAGIRK 302 (311)
Q Consensus 294 ~m~~~~~~~ 302 (311)
++.+..+..
T Consensus 566 R~~~~~P~~ 574 (679)
T 4e6h_A 566 RFFEKFPEV 574 (679)
T ss_dssp HHHHHSTTC
T ss_pred HHHHhCCCC
Confidence 999876653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=6.1e-10 Score=79.13 Aligned_cols=101 Identities=7% Similarity=-0.170 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHH
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGA 244 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 244 (311)
...+..+...+...|++++|...|++++.. .+.+...|..+..+|...|++++|.+.|++. ...| +...+..+..+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 344555555666666666666666666542 1224445566666666666666666666665 2233 33455555566
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCch
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
+...|++++|...|+++++..|+++
T Consensus 99 ~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 6666666666666666666666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.05 E-value=5.5e-09 Score=81.28 Aligned_cols=138 Identities=9% Similarity=-0.053 Sum_probs=91.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc--hhhHHHHHHH
Q 040965 135 WNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDL 212 (311)
Q Consensus 135 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~ 212 (311)
+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 344566677778888888888776654 344335555555777888888888888755432 1 221 2356667778
Q ss_pred HHhcCCHHHHHHHHHhC--CCC-CC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH
Q 040965 213 LGRAGLLSEAKEFMRSM--PFE-PD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (311)
+...|++++|++.|++. +.. |. .........++.+.|+.++|...|+++...+|. ...+..|..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 88888888888888877 211 43 123444555677888888888888888888887 656555543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.6e-09 Score=71.63 Aligned_cols=114 Identities=18% Similarity=0.130 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHH
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALLGA 244 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~ 244 (311)
...+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|..+++++ ... .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666666677777777777777776643 1224456666777777777777777777766 222 345566677777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
+...|++++|...++++.+..|.+...+..+..++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 88888888888888888888888777777776666543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.1e-09 Score=72.93 Aligned_cols=116 Identities=8% Similarity=-0.061 Sum_probs=85.3
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
+...+..+...+...|++++|...|++..+. .+.+...+..+..+|...|++++|.+.+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4566777777777888888888888877753 1224566777777777888888888887776 3333 4566777777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
.+...|++++|...++++.+..|.+...+..+..++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 8888888888888888888888887777777777776554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.04 E-value=5.7e-08 Score=85.61 Aligned_cols=242 Identities=10% Similarity=-0.007 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHhcC-------CHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHH-HHHHHHhhccCC
Q 040965 27 VSWTSIINGFVRNG-------CFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGK-QVHGYILRNEIV 98 (311)
Q Consensus 27 ~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~-~~~~~~~~~~~~ 98 (311)
..|...+..--..+ ..+.+..+|++++..- +-+...|......+ ...|+.++|. +++++..... +
T Consensus 303 ~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~---p~~~~lW~~ya~~~---~~~~~~~~a~r~il~rAi~~~-P 375 (679)
T 4e6h_A 303 LIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV---CFAPEIWFNMANYQ---GEKNTDSTVITKYLKLGQQCI-P 375 (679)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHH---HHHSCCTTHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc---CCCHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHhC-C
Confidence 45666665443332 1345667888887632 22344444444322 2356688896 9999998753 4
Q ss_pred chHHHHHHHHHHHhhcCCHHHHHHHHHHccc-------------c------------hHhhHHHHHHHHHcCCCHHHHHH
Q 040965 99 LSVFMGTALIDLYGKVGCLERAIRVFKSMVI-------------K------------DVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 99 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~------------~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
.+...|..++....+.|++++|.++|+++.. | ....|...+....+.|+.+.|..
T Consensus 376 ~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~ 455 (679)
T 4e6h_A 376 NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRK 455 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHH
Confidence 5677778888889999999999999998853 2 12357777888888899999999
Q ss_pred HHHHHHHc-CCCCcHHHHHHHHHHHHcc-ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 040965 154 MFDEMKEK-GLRANEITFVAVLTACARA-QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-P 230 (311)
Q Consensus 154 ~~~~m~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~ 230 (311)
+|.+..+. + .+....|...+..-.+. ++.+.|..+|+..++.+ +.+...+...++.....|+.+.|..+|++. .
T Consensus 456 vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~ 532 (679)
T 4e6h_A 456 IFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSID 532 (679)
T ss_dssp HHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999876 2 12233444333333343 55999999999999863 334456677888888899999999999998 3
Q ss_pred CCC----CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 231 FEP----DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 231 ~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
..| ....|...+..-...|+.+.+..+.+++.+..|++. ....++.-|
T Consensus 533 ~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 533 KISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp TSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred hcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 334 235677777777889999999999999999999875 333444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=4.6e-09 Score=72.31 Aligned_cols=117 Identities=10% Similarity=-0.015 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHH
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGA 244 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 244 (311)
...+..+...+...|+++.|...+++.... .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445566666677777777777777776643 1224556666777777777777777777776 2233 34566777777
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchh
Q 040965 245 CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERW 285 (311)
Q Consensus 245 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 285 (311)
+...|++++|...++++.+..|.+...+..+..++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 88888888888888888888888877888888887777654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-09 Score=79.88 Aligned_cols=126 Identities=10% Similarity=0.112 Sum_probs=90.7
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHH-HHhcCCH-
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDL-LGRAGLL- 219 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 219 (311)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...|+++.+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 445678888888888877763 346678888888888888888888888888754 12245567777777 6778887
Q ss_pred -HHHHHHHHhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh
Q 040965 220 -SEAKEFMRSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 220 -~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 270 (311)
++|.+.++++ ...|+ ...+..+...+...|++++|...++++.+..|++..
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 8888888887 33443 466677777788888888888888888888887653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-09 Score=82.78 Aligned_cols=129 Identities=9% Similarity=-0.070 Sum_probs=70.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcc--cchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHHc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMV--IKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN--EITFVAVLTACAR 179 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~ 179 (311)
...+...+...|++++|.++|+.+. .|+......+...+.+.+++++|+..|+...... .|. ...+..+..++..
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~ 183 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAAN 183 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHH
Confidence 3345555666666666666666663 2222244445556666666666666665433221 111 2345555666666
Q ss_pred cccHHHHHHHHHHhhccCCCccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 040965 180 AQLVELGLELFHSMLGKFEVVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD 234 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~ 234 (311)
.|++++|+..|++.... ...|. .........++.+.|+.++|...|+++ ...|+
T Consensus 184 LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 184 LALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 66666666666666532 22132 234445555666666666666666666 33455
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-08 Score=75.55 Aligned_cols=49 Identities=12% Similarity=-0.035 Sum_probs=32.5
Q ss_pred hhcCChHHHHH---HHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhc
Q 040965 6 VKNGDMDSAIL---LFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMG 54 (311)
Q Consensus 6 ~~~g~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 54 (311)
...|++++|.+ ++..-+.....++..+...+...|++++|...+++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 54 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQ 54 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45788888888 44332223556778888888888888888888887765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=5.7e-10 Score=83.47 Aligned_cols=171 Identities=9% Similarity=-0.035 Sum_probs=97.6
Q ss_pred HHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH
Q 040965 108 IDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE 184 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 184 (311)
+......|+++++.+.++.-... ....+..+...+...|++++|...|++..+.. |+...+... ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~ 80 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILL 80 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHH
Confidence 33444455555555555433211 34455556666666677777777666665531 110000000 000
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
.-. . ......+..+..+|...|++++|.+.+++. ...| +...+..+..++...|++++|...|++++
T Consensus 81 ~~~---~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 81 DKK---K--------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHH---H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH---H--------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 000 0 001246777888888888999988888887 3344 55677788888999999999999999999
Q ss_pred hcCCCchhHHHHHHHHHhccchhHHHH-HHHHHHHHcc
Q 040965 263 ELQPKHCGRYVVLSNIHAGLERWNRAT-DLRKAMVEAG 299 (311)
Q Consensus 263 ~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~ 299 (311)
+..|.+..++..+..++...++.+++. ..+..|...+
T Consensus 150 ~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 150 SLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999889999999999999888887 6666665544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-08 Score=71.36 Aligned_cols=104 Identities=6% Similarity=-0.149 Sum_probs=84.6
Q ss_pred CC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHH
Q 040965 164 RA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGA 240 (311)
Q Consensus 164 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ 240 (311)
.| +...+..+...+.+.|++++|...|++++.. .+.+...|..+..+|...|++++|.+.|++. .+.| +...|..
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 44 3456777788889999999999999998854 2335677888899999999999999999888 4445 4577788
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
+..+|...|++++|...|+++++..|+++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 88889999999999999999999888764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.6e-09 Score=69.77 Aligned_cols=101 Identities=9% Similarity=-0.051 Sum_probs=82.7
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--chhHHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPK--HCGRYVVLSN 277 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 277 (311)
+...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|. +..++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3456777788888888999998888887 3333 4566777888888999999999999999999888 8888999999
Q ss_pred HHhcc-chhHHHHHHHHHHHHccCCC
Q 040965 278 IHAGL-ERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 278 ~~~~~-g~~~~A~~~~~~m~~~~~~~ 302 (311)
++... |++++|.+.+++..+....+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999 99999999999988766543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-08 Score=74.24 Aligned_cols=149 Identities=13% Similarity=-0.009 Sum_probs=72.7
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc------c---hHhhHHHHHHHHHcCCCHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI------K---DVCTWNAMISSLASNSREK 149 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~---~~~~~~~l~~~~~~~~~~~ 149 (311)
.|++++|.+.++.+.. .......++..+...+...|++++|...+++... . ...++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4556666664333322 1123445566666666666666666666665532 1 2344555566666666666
Q ss_pred HHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc----chhhHHHHHHHHHhcCCH
Q 040965 150 EALVMFDEMKEK----GLRA--NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP----IMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 150 ~a~~~~~~m~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~ 219 (311)
+|.+.+++..+. +..| ....+..+...+...|++++|...+++..+...... ...++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 666666654432 1011 123445555556666666666666655542200000 112234444445555555
Q ss_pred HHHHHHHHh
Q 040965 220 SEAKEFMRS 228 (311)
Q Consensus 220 ~~A~~~~~~ 228 (311)
++|.+.+++
T Consensus 164 ~~A~~~~~~ 172 (203)
T 3gw4_A 164 LEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555544443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.95 E-value=3.5e-09 Score=74.59 Aligned_cols=100 Identities=9% Similarity=-0.132 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+..+...+...|++++|...|++++.. .+.+...|..+..+|...|++++|...|++. ...| +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 44455555666667777777777666643 1224455666666666667777776666665 2233 334455555666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCch
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
...|++++|...|+++++..|+++
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 666777777777766666666554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.4e-08 Score=71.09 Aligned_cols=90 Identities=10% Similarity=-0.002 Sum_probs=40.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
+..+...+...|++++|...|++... .+..++..+..++...|++++|.+.+++..+.. +.+...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHh
Confidence 33444444455555555555544421 133444444444444555555555554444432 12334444444444444
Q ss_pred ccHHHHHHHHHHhh
Q 040965 181 QLVELGLELFHSML 194 (311)
Q Consensus 181 ~~~~~a~~~~~~~~ 194 (311)
|++++|...++++.
T Consensus 95 ~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 95 GKFRAALRDYETVV 108 (166)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 45555554444444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.93 E-value=1e-08 Score=70.48 Aligned_cols=96 Identities=8% Similarity=-0.137 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+......+.+.|++++|...|++.++. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455555566666666666666665542 1223445555555666666666666665555 2233 234455555555
Q ss_pred HhcCChhHHHHHHHHHHhcC
Q 040965 246 KIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~ 265 (311)
...|++++|...++++++..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 56666666666666666555
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=9.2e-09 Score=70.22 Aligned_cols=97 Identities=16% Similarity=-0.028 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
..+..+...+.+.|++++|...|++. ...| +...+..+..++...|++++|...++++++.+|++..++..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666778889999999999999998 4455 567777888889999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHccC
Q 040965 282 LERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~~ 300 (311)
.|++++|...+++..+.+.
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 9999999999999887543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.9e-09 Score=74.89 Aligned_cols=96 Identities=10% Similarity=-0.054 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
..+..+...+...|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++.+|+++.++..++.+|..
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34445555555666666666666555 2223 334445555555566666666666666666666655556666666666
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...|++..+..
T Consensus 102 ~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 102 XGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC
Confidence 666666666666555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-06 Score=73.58 Aligned_cols=86 Identities=14% Similarity=0.063 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCC-HhHHHHHHHHhhcCCCCCC-CchHHHHHHHHHhhhh-hhcCcch
Q 040965 9 GDMDSAILLFENMLK--RDVVSWTSIINGFVRNGC-FGEAICVFKNMMGNVNLVR-PNEATYVSVLSSCAGL-VNEGGLY 83 (311)
Q Consensus 9 g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~-~~~~~~~ 83 (311)
|+++.+..+|++... |+...|...+....+.++ .+....+|+.+...-+ .. ++...|...+..+... ...++.+
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg-~d~~s~~iW~~Yi~f~~~~~~~~~~~~ 106 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFE-NYWDSYGLYKEYIEEEGKIEDEQTRIE 106 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHST-TCTTCHHHHHHHHHHTSSCSSHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcC-CCcccHHHHHHHHHHHHhchhhhHHHH
Confidence 788999999998843 688899888888777763 4567778888775411 22 3456666555433211 1234578
Q ss_pred hHHHHHHHHhhc
Q 040965 84 LGKQVHGYILRN 95 (311)
Q Consensus 84 ~a~~~~~~~~~~ 95 (311)
.+..+|++.+..
T Consensus 107 ~vR~iy~rAL~~ 118 (493)
T 2uy1_A 107 KIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhC
Confidence 888888888774
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=73.07 Aligned_cols=108 Identities=10% Similarity=-0.060 Sum_probs=90.7
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
+...+..+...+...|++++|+..|++.++. .+.+...|..+..+|...|++++|.+.|++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5667888888999999999999999999864 2335678889999999999999999999988 4445 4577888888
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
.+...|++++|...|+++++..|++...+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999999999987655433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=5e-08 Score=65.66 Aligned_cols=109 Identities=9% Similarity=-0.047 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 245 (311)
..+..+...+...|++++|...+++.... .+.+...+..+..++...|++++|.+.+++. ...| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555556666666666555532 1223445555555566666666666666555 2223 344555556666
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
...|++++|...++++.+..|+++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 666777777777777666666665555444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.88 E-value=1e-08 Score=74.98 Aligned_cols=122 Identities=8% Similarity=0.056 Sum_probs=72.1
Q ss_pred HhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHccccH--H
Q 040965 111 YGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA-CARAQLV--E 184 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 184 (311)
+...|++++|+..+++... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666677666666522 245666667777777777777777777766542 2245556666666 5566776 7
Q ss_pred HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 185 LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
+|...++++++. .+.+...+..+...|...|++++|.+.++++ ...|+.
T Consensus 99 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 777777776643 1223455666666777777777777777665 334443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-06 Score=68.60 Aligned_cols=240 Identities=13% Similarity=0.027 Sum_probs=148.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTA 106 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 106 (311)
.++.+-....+.+..++|++++++++. +.|+..| |+.--.+...++. .+++++..++.++... +.+..+|+.
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~----~nP~~ytaWn~R~~iL~~l~~--~l~eEL~~~~~~L~~n-PKny~aW~h 128 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVR----MNPAHYTVWQYRFSLLTSLNK--SLEDELRLMNEFAVQN-LKSYQVWHH 128 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTT-CCCHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHH----hCchhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHhC-CCcHHHHHH
Confidence 344444444455566789999999988 5666544 3333222222221 4888999998888876 346677777
Q ss_pred HHHHHhhc-C-CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHH--------HHHHHHHHHHHcCCCCcHHHHHHH
Q 040965 107 LIDLYGKV-G-CLERAIRVFKSMVIK---DVCTWNAMISSLASNSREK--------EALVMFDEMKEKGLRANEITFVAV 173 (311)
Q Consensus 107 l~~~~~~~-g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~~~~~~~~~l 173 (311)
-..++.+. + ++++++++++++... +..+|+.-...+.+.|.++ ++++.++++.+.. +-|...|+..
T Consensus 129 R~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R 207 (349)
T 3q7a_A 129 RLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWR 207 (349)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 66666666 6 788888988888655 4445554444444444444 8888888888874 3377778777
Q ss_pred HHHHHcccc-------HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH--------------------HHHHHHH
Q 040965 174 LTACARAQL-------VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL--------------------SEAKEFM 226 (311)
Q Consensus 174 ~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~ 226 (311)
...+.+.++ ++++++.+++++.. .+-|...|+-+-..+.+.|+. ....+..
T Consensus 208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (349)
T 3q7a_A 208 WYLRVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFG 285 (349)
T ss_dssp HHHHTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------
T ss_pred HHHHHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHH
Confidence 777777665 67888888887753 233556676666666655543 3334444
Q ss_pred HhC-CC-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCchhHHHHHHH
Q 040965 227 RSM-PF-------EPDASVLGALLGACKIHGAVDLCHEVGRRLL-ELQPKHCGRYVVLSN 277 (311)
Q Consensus 227 ~~~-~~-------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~l~~ 277 (311)
.++ +. .++......|+..|...|+.++|.++++.+. +.+|.....|...+.
T Consensus 286 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 286 FPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 444 11 1344555666677777777777777777776 466766555554443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.1e-08 Score=69.86 Aligned_cols=100 Identities=7% Similarity=-0.138 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLG 243 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 243 (311)
+...+..+...+...|++++|...|++.+.. .+.+...+..+..++...|++++|...+++. ...| +...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4556666666666667777777666666643 1223455666666666666666666666665 2233 3345555556
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
.+...|++++|...++++.+..|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 666666666666666666665555
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-08 Score=70.40 Aligned_cols=101 Identities=11% Similarity=0.083 Sum_probs=89.9
Q ss_pred ccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHH
Q 040965 200 VPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSN 277 (311)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 277 (311)
+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.+..++..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999998 5555 56778888888999999999999999999999999999999999
Q ss_pred HHhccchhHHHHHHHHHHHHccC
Q 040965 278 IHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 278 ~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
++.+.|++++|...+++..+...
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p 115 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDS 115 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHhhHHHHHHHHHHHHHhCC
Confidence 99999999999999999987654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.87 E-value=3e-08 Score=67.48 Aligned_cols=98 Identities=20% Similarity=0.223 Sum_probs=87.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++.+..|.+..++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999998 3334 56778888889999999999999999999999999889999999999
Q ss_pred ccchhHHHHHHHHHHHHccC
Q 040965 281 GLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~~~ 300 (311)
..|++++|...++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999988654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-06 Score=67.12 Aligned_cols=247 Identities=13% Similarity=0.037 Sum_probs=160.1
Q ss_pred cHHHHHHHHHH---HHhcCCHh-HHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhhhhhc-------CcchhHHHHHHHH
Q 040965 25 DVVSWTSIING---FVRNGCFG-EAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAGLVNE-------GGLYLGKQVHGYI 92 (311)
Q Consensus 25 ~~~~~~~l~~~---~~~~g~~~-~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~-------~~~~~a~~~~~~~ 92 (311)
....|..+... ..+.|.++ +|+++++.++. ..|+..| |+.--.....++.. ..+++++.+++.+
T Consensus 25 ki~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~----~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 25 KLKLYQSATQAVFQKRQAGELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESC 100 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHT----TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH----HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence 34445444433 34567665 79999999998 6677655 33322222222211 1157888888888
Q ss_pred hhccCCchHHHHHHHHHHHhhcC--CHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCCCc
Q 040965 93 LRNEIVLSVFMGTALIDLYGKVG--CLERAIRVFKSMVIK---DVCTWNAMISSLASNSR-EKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~-~~~a~~~~~~m~~~~~~~~ 166 (311)
+... +.+..+|+.-..++.+.| ++++++++++++... |..+|+.-...+...|. ++++++.++++.+.. +-|
T Consensus 101 L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N 178 (331)
T 3dss_A 101 LRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSN 178 (331)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCC
T ss_pred HHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCC
Confidence 8875 446778877777777777 488999999988544 55666666666677777 689999999998875 336
Q ss_pred HHHHHHHHHHHHcc--------------ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhc-----------CCHHH
Q 040965 167 EITFVAVLTACARA--------------QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRA-----------GLLSE 221 (311)
Q Consensus 167 ~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~ 221 (311)
...|+.....+... +.++++++.++..+.. .+-|...|+-+-..+.+. +.+++
T Consensus 179 ~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 179 YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 77777666655544 5678888888888854 233455665444444444 34677
Q ss_pred HHHHHHhC-CCCCCcchHHHHHHH-----HHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 222 AKEFMRSM-PFEPDASVLGALLGA-----CKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 222 A~~~~~~~-~~~p~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
+++.++++ ...||. .|..+..+ ....|..+++...+.++.+++|...+-|..+...+.
T Consensus 257 el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~ 320 (331)
T 3dss_A 257 ELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 320 (331)
T ss_dssp HHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence 77777777 555655 23222111 123566677888888888888887777776655543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.2e-06 Score=68.61 Aligned_cols=234 Identities=13% Similarity=0.031 Sum_probs=160.9
Q ss_pred hHHHHHHHHHhhhhhhcCcch-hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC----------HHHHHHHHHHcccc-
Q 040965 63 EATYVSVLSSCAGLVNEGGLY-LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC----------LERAIRVFKSMVIK- 130 (311)
Q Consensus 63 ~~~~~~ll~~~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~- 130 (311)
...|..+...+....+.|.++ +|+++.+.++...+ -+..+|+.--.++...+. +++++.+++.+...
T Consensus 26 i~~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 26 LKLYQSATQAVFQKRQAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC
Confidence 344555555443333355554 78999999998763 345566655444444433 67888888887443
Q ss_pred --hHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc-HHHHHHHHHHhhccCCCccchhh
Q 040965 131 --DVCTWNAMISSLASNS--REKEALVMFDEMKEKGLRANEITFVAVLTACARAQL-VELGLELFHSMLGKFEVVPIMEH 205 (311)
Q Consensus 131 --~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 205 (311)
+..+|+.-...+...+ +++++++.++++.+.. +-|...|+.-...+...|. .+++++.++++++. .+-|...
T Consensus 105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SA 181 (331)
T 3dss_A 105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSS 181 (331)
T ss_dssp TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHH
T ss_pred CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHH
Confidence 5667777667777777 4899999999999874 3377888877777778888 58999999999975 2345566
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc-----------CChhHHHHHH
Q 040965 206 YGCVVDLLGRA--------------GLLSEAKEFMRSM-PFEP-DASVLGALLGACKIH-----------GAVDLCHEVG 258 (311)
Q Consensus 206 ~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~ 258 (311)
|+.....+... +.++++++.+.+. ...| |...|+.+-..+... +.++++++.+
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~ 261 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESC 261 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHH
Confidence 76666555554 4578889988887 4455 445555444444433 3578999999
Q ss_pred HHHHhcCCCchhHHHHHHHH---HhccchhHHHHHHHHHHHHccC
Q 040965 259 RRLLELQPKHCGRYVVLSNI---HAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 259 ~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+++.+..|++..++..++.. ....|..+++...+.++.+.++
T Consensus 262 ~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 262 KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 99999999986665544432 2346778889999999887543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=8.3e-08 Score=67.57 Aligned_cols=111 Identities=14% Similarity=-0.043 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHH
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLG 239 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 239 (311)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|.+.+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 4556666666677777777777777777643 343 456666677777777777777777766 3334 445666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
.+...+...|++++|...++++.+..|++...+..+....
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6667777788888888888888888887766665555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=9.9e-09 Score=83.36 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=73.3
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-h---------------HhhHHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-D---------------VCTWNAMISSLA 143 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~l~~~~~ 143 (311)
+++|...++...+.. +.+...+..+...|.+.|++++|+..|++... | + ..+|..+..+|.
T Consensus 129 ~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 129 FEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555554443322 12345666667777777777777777766622 2 1 245555555555
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (311)
+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+++++. .+.+...+..+..++...|++++|
T Consensus 208 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555542 224455555555555555666665555555532 111234455555555555555555
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-08 Score=69.10 Aligned_cols=96 Identities=11% Similarity=-0.032 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...|+++++.+|+++..+..++.+|..
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 34444555556666666666666655 2233 334455555556666666666666666666666665566666666666
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...|++..+..
T Consensus 99 ~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 99 LGDLDGAESGFYSARALA 116 (142)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 666666666666655543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.85 E-value=4.3e-08 Score=67.28 Aligned_cols=96 Identities=13% Similarity=0.019 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
..+..+...+.+.|++++|.+.|++. ...| +...+..+..++...|++++|...++++++.+|++..+|..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555556666666666666666665 2233 345555555666666666666666666666666666666666666666
Q ss_pred cchhHHHHHHHHHHHHcc
Q 040965 282 LERWNRATDLRKAMVEAG 299 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~~~ 299 (311)
.|++++|...|++..+.+
T Consensus 85 ~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 85 VKEYASALETLDAARTKD 102 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC
Confidence 666666666666665543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=5.3e-08 Score=68.59 Aligned_cols=100 Identities=12% Similarity=-0.028 Sum_probs=89.8
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLS 276 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 276 (311)
+...+..+...+...|++++|.+.|++. ...|+ ...+..+...+...|++++|...++++.+..|++...+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 5567888889999999999999999998 66777 577788888899999999999999999999999988999999
Q ss_pred HHHhccchhHHHHHHHHHHHHccCC
Q 040965 277 NIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.++...|++++|...|++..+....
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999886543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.8e-08 Score=66.27 Aligned_cols=99 Identities=13% Similarity=0.123 Sum_probs=87.4
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
....+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|++...+..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999998 3344 5677788888899999999999999999999999998999999999
Q ss_pred hccchhHHHHHHHHHHHHccC
Q 040965 280 AGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 280 ~~~g~~~~A~~~~~~m~~~~~ 300 (311)
...|++++|...+++..+.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 999999999999999887654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.82 E-value=4.4e-08 Score=67.39 Aligned_cols=101 Identities=13% Similarity=-0.029 Sum_probs=64.5
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----cchHHHHHHHH
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD----ASVLGALLGAC 245 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~ 245 (311)
.+...+...|++++|...|+.+.+.....+ ....+..+..++...|++++|.+.|++. ...|+ ...+..+..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 345566777777888777777765311111 0135666677777777777777777776 33343 34455566667
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHH
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~ 272 (311)
...|++++|...|+++.+..|+++...
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 777777777777777777777765433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-08 Score=69.19 Aligned_cols=92 Identities=7% Similarity=-0.006 Sum_probs=42.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch-------hHHHHHH
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC-------GRYVVLS 276 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~ 276 (311)
+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..+++++++.|++. .+|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444444455555555544444 2223 223344444445555555555555555554443321 1344444
Q ss_pred HHHhccchhHHHHHHHHHHHH
Q 040965 277 NIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.++...|++++|.+.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555554443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.80 E-value=6.9e-08 Score=69.63 Aligned_cols=102 Identities=11% Similarity=-0.074 Sum_probs=80.6
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
+...|..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|+..|++.++. .+.+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 56678888888889999999999999888763 336778888888889999999999999988864 123466788888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
.+|...|++++|.+.|++. ...|+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 8899999999999988887 334443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=5.9e-08 Score=66.60 Aligned_cols=100 Identities=14% Similarity=0.071 Sum_probs=88.5
Q ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 201 PIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 201 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|++...+..++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 34567888889999999999999999988 3344 567788888889999999999999999999999998899999999
Q ss_pred HhccchhHHHHHHHHHHHHccC
Q 040965 279 HAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 279 ~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+...|++++|...+++..+.+.
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHhCCHHHHHHHHHHHHhcCc
Confidence 9999999999999999988754
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.78 E-value=5e-08 Score=77.10 Aligned_cols=188 Identities=10% Similarity=-0.041 Sum_probs=117.7
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (311)
+...+..+...+.+.|++++|+..|++..+ ..|+. ..+..+-.++. +.|++++|...+++.++.. +.+...
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~~-p~~~~~ 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT----RNPLVAVYYTNRALCYL---KMQQPEQALADCRRALELD-GQSVKA 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCSCCHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTSC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCccHHHHHHHHHHHH---HhcCHHHHHHHHHHHHHhC-CCCHHH
Confidence 456778888899999999999999999987 45643 44444443332 3667999999999988875 345778
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccchHh---hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVC---TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
+..+..+|...|++++|+..|++....++. .+...+....+ ..++.. +........+.+......+. .+ ..
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~ 148 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLT-RL-IA 148 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HH
Confidence 888899999999999999999887443221 11112222111 111111 12222333333444333332 22 36
Q ss_pred ccHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhc-CCHHHHHHHHHhC
Q 040965 181 QLVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRA-GLLSEAKEFMRSM 229 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~ 229 (311)
|+.++|.+.++...+ ..|+. .....+...+.+. +.+++|.++|+++
T Consensus 149 ~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 149 AERERELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888999988888874 34443 3334444444454 6788899999776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.5e-08 Score=82.95 Aligned_cols=128 Identities=9% Similarity=0.023 Sum_probs=85.3
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-------------chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVP-------------IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP- 233 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p- 233 (311)
.+..+...+.+.|+++.|...|+++++.....+ ....|..+..+|.+.|++++|++.+++. ...|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 444444555555555555555555543200000 1356777888888888888888888887 3334
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHH-HHHHHH
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATD-LRKAMV 296 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~m~ 296 (311)
+...|..+..+|...|++++|...|++++++.|++..++..+..++.+.++++++.+ .++.|.
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557777788888889999999999999998888888888888888888888887764 444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-07 Score=77.62 Aligned_cols=189 Identities=12% Similarity=-0.033 Sum_probs=95.1
Q ss_pred hhhhcCcchhHHHHHHHHhhccCCch----------------HHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----h--
Q 040965 75 GLVNEGGLYLGKQVHGYILRNEIVLS----------------VFMGTALIDLYGKVGCLERAIRVFKSMVIK-----D-- 131 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-- 131 (311)
.+.+.|++++|.+.+..+++.....+ ...+..++..|...|++++|.+.+..+.+. +
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 33446777777777777776532211 122455666666667776666666655221 1
Q ss_pred --HhhHHHHHHHHHcCCCHHHHHHHHHHHHH----cCCCCc-HHHHHHHHHHHHccccHHHHHHHHHHhhccC---CCcc
Q 040965 132 --VCTWNAMISSLASNSREKEALVMFDEMKE----KGLRAN-EITFVAVLTACARAQLVELGLELFHSMLGKF---EVVP 201 (311)
Q Consensus 132 --~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~ 201 (311)
..+.+.+...+...|++++|.+++++... .+..+. ..++..+...+...|++++|..+++.+.... +..+
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 11223333344445666666666665442 122222 3455555666666666666666665544321 1111
Q ss_pred -chhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 202 -IMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDA-----SVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 202 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
...++..++..|...|++++|..++++. ...++. ..+..+...+...|++++|...|.++.+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1234555556666666666666665544 001111 2233333344455566666665555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=8.4e-08 Score=66.71 Aligned_cols=96 Identities=14% Similarity=-0.008 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|++..++..++.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 444555555555566666666555554 2223 23444555555555666666666666666555555555555666666
Q ss_pred ccchhHHHHHHHHHHHHc
Q 040965 281 GLERWNRATDLRKAMVEA 298 (311)
Q Consensus 281 ~~g~~~~A~~~~~~m~~~ 298 (311)
..|++++|...|++..+.
T Consensus 89 ~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 666666666655555543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-06 Score=73.69 Aligned_cols=194 Identities=7% Similarity=-0.042 Sum_probs=137.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch---------------HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhcc
Q 040965 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNE---------------ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNE 96 (311)
Q Consensus 32 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~---------------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 96 (311)
-...+.+.|++++|++.|..+.+..+ ...+. ..+..+...|. +.|++++|.+.+..+.+.-
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~---~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDS-SQSSAAAGASVDDKRRNEQETSILELGQLYV---TMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCC-CSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH---HHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCc-ccchhHHHHHHHHHHhhhHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHH
Confidence 35668899999999999999998652 11111 12444544443 4777999999999887642
Q ss_pred CC-ch----HHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc-
Q 040965 97 IV-LS----VFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK- 161 (311)
Q Consensus 97 ~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~- 161 (311)
.. ++ ..+.+.+...+...|++++|..++.+.... -..++..+...|...|++++|..+++++...
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 165 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREF 165 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 11 11 234445556666779999999999877321 2457788999999999999999999987653
Q ss_pred ---CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCC---Cccc--hhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 162 ---GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFE---VVPI--MEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 162 ---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+-.+ ...++..++..|...|++++|..++++...... .++. ...+..+...+...|++++|...|.+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 166 KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1122 245788888999999999999999998764311 1111 245566677778899999999988776
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-07 Score=65.36 Aligned_cols=57 Identities=9% Similarity=0.035 Sum_probs=22.9
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
.+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|+..+++.+
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444443331 1123334444444444444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.8e-07 Score=79.34 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=99.1
Q ss_pred HHHccccHHHHHHHHHHhhccC----C-Ccc-chhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCc-chHH
Q 040965 176 ACARAQLVELGLELFHSMLGKF----E-VVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM---------PFEPDA-SVLG 239 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~ 239 (311)
.+...|++++|+.++++.++.. | -.| ...+++.|...|...|++++|..++++. ...|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3567899999999998876431 1 123 3467899999999999999999998876 223433 6688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh-----cCCCchh---HHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 240 ALLGACKIHGAVDLCHEVGRRLLE-----LQPKHCG---RYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 240 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
.|...|...|++++|+.+++++++ .+|+++. ....+..++...+++++|..++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999985 6777654 45577888889999999999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-08 Score=81.13 Aligned_cols=152 Identities=11% Similarity=-0.025 Sum_probs=81.1
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHH
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVV 210 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 210 (311)
....+..+...+.+.|++++|...|++..+. .|+... +...++.+++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH-----------HHHHHHHH
Confidence 3456777788888889999999999887765 444331 233444444432221 12677788
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH-HhccchhHH
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI-HAGLERWNR 287 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 287 (311)
.+|.+.|++++|.+.+++. ...| +...+..+..+|...|++++|...|+++++..|++..++..+..+ ....+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888889999998888887 3344 557778888888889999999999999988888887777777766 334566777
Q ss_pred HHHHHHHHHHccCCC
Q 040965 288 ATDLRKAMVEAGIRK 302 (311)
Q Consensus 288 A~~~~~~m~~~~~~~ 302 (311)
+...|++|.......
T Consensus 318 a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 318 QKEMYKGIFKGKDEG 332 (338)
T ss_dssp ---------------
T ss_pred HHHHHHHhhCCCCCC
Confidence 888888887655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.70 E-value=8.8e-08 Score=67.56 Aligned_cols=62 Identities=18% Similarity=0.050 Sum_probs=46.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCchhHH----HHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLEL-------QPKHCGRY----VVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.|..+..++.+.|++++|+..++++++. +|++..+| ...+.++...|++++|...|++..+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5666666677777777777777777777 88777777 77888888888888888888777654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.70 E-value=7.8e-08 Score=66.00 Aligned_cols=42 Identities=2% Similarity=-0.186 Sum_probs=23.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
..+..+...+...|++++|...++++.+..|+ +.....+..+
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~ 121 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 34445555566666666666666666666553 3344444333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.7e-06 Score=67.62 Aligned_cols=215 Identities=12% Similarity=0.041 Sum_probs=154.1
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHcccc---hHhhHHHHHHHHHcC-C-CHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG-CLERAIRVFKSMVIK---DVCTWNAMISSLASN-S-REKEAL 152 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~ 152 (311)
.+..++|++++++++... +-+..+|+.-..++...| .+++++.+++.+... +..+|+.-...+... + ++++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 334578999999999886 336677887777777888 599999999998544 556676666666554 6 889999
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHccccHH--------HHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC------
Q 040965 153 VMFDEMKEKGLRANEITFVAVLTACARAQLVE--------LGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL------ 218 (311)
Q Consensus 153 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 218 (311)
++++++.+.. +-+...|+.-.-.+.+.|..+ ++++.++++++. .+-|...|+.....+.+.++
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 9999998764 337778877666666667766 899999999875 23466778877777777776
Q ss_pred -HHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCCh--------------------hHHHHHHHHHHhcC------CCch
Q 040965 219 -LSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAV--------------------DLCHEVGRRLLELQ------PKHC 269 (311)
Q Consensus 219 -~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------~~~~ 269 (311)
++++++.++++ ...| |...|+.+-..+.+.|+. .....+..++.... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888887 4455 456666666556665553 23333333333322 4566
Q ss_pred hHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 270 GRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 270 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
.+...|++.|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6888999999999999999999999864
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.69 E-value=6.5e-08 Score=69.08 Aligned_cols=130 Identities=12% Similarity=-0.010 Sum_probs=77.7
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----cc
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPD----AS 236 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~ 236 (311)
++..+...+...|++++|...+++.++...-.++ ..++..+...+...|++++|.+.+++. ...++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555556666666655555432100011 134555666666666766666666654 10111 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQP------KHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+..+...+...|++++|...++++.+..+ ....++..++..+...|++++|.+.+++..+.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 455566667778888888888887775321 12346777888888888999998888887654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.4e-08 Score=82.84 Aligned_cols=116 Identities=9% Similarity=-0.033 Sum_probs=75.7
Q ss_pred HHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhH
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 253 (311)
.+.+.|++++|...+++.++. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 445566666777666666643 1223556666677777777777777777666 3344 34566667777778888888
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHH--HhccchhHHHHHHHH
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNI--HAGLERWNRATDLRK 293 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 293 (311)
|...++++.+..|++..++..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888777677766666 777788888888776
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.69 E-value=7.1e-08 Score=66.23 Aligned_cols=98 Identities=10% Similarity=0.111 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc-------hhHHH
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH-------CGRYV 273 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~ 273 (311)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++.+..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345677778888888888888888877 3233 55667778888889999999999999999877665 67889
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 274 VLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.++.++...|++++|...|++..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999988653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3e-07 Score=75.59 Aligned_cols=90 Identities=8% Similarity=-0.035 Sum_probs=78.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
+...|..+..+|.+.|++++|.+.+++. ...| +...+..+..+|...|++++|...|+++++..|++...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567888999999999999999999998 5566 4577888888999999999999999999999999988999999999
Q ss_pred hccchhHHHHHH
Q 040965 280 AGLERWNRATDL 291 (311)
Q Consensus 280 ~~~g~~~~A~~~ 291 (311)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 988888877653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-07 Score=63.34 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=39.4
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCCcc----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---hhHHHHHHHHHhc
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-PFEPDAS----VLGALLGACKIHGAVDLCHEVGRRLLELQPKH---CGRYVVLSNIHAG 281 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 281 (311)
...+...|++++|.+.|+++ ...|+.. .+..+...+...|++++|...++++.+..|++ +.++..++.++..
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~ 88 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG 88 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence 34444444444444444444 1122221 33334444444444444444444444444444 3344444444444
Q ss_pred cchhHHHHHHHHHHHH
Q 040965 282 LERWNRATDLRKAMVE 297 (311)
Q Consensus 282 ~g~~~~A~~~~~~m~~ 297 (311)
.|++++|...|+++.+
T Consensus 89 ~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 89 EGKNTEAQQTLQQVAT 104 (129)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444444
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.7e-08 Score=72.93 Aligned_cols=97 Identities=8% Similarity=-0.076 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-----------------cchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-----------------ASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
..+..+...+...|++++|.+.|++. ...|+ ...+..+..++...|++++|...++++++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 34555666666777777777776665 22222 2567778888999999999999999999999
Q ss_pred CCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 266 PKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
|++..++..++.+|...|++++|...|++..+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 153 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 153 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 99999999999999999999999999999987654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.6e-07 Score=62.45 Aligned_cols=94 Identities=13% Similarity=-0.075 Sum_probs=41.4
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---cchHHHHHHHHHh
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD---ASVLGALLGACKI 247 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~ 247 (311)
.+...+...|++++|...++++.+. .+.+...+..+..++...|++++|.+.+++. ...|+ ...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 3333444444444444444444332 1112333444444444444444444444444 22222 3344444444555
Q ss_pred c-CChhHHHHHHHHHHhcCCC
Q 040965 248 H-GAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 248 ~-g~~~~a~~~~~~~~~~~~~ 267 (311)
. |++++|.+.++++....|+
T Consensus 89 ~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp CSSCSHHHHHHHHHHGGGCCC
T ss_pred HhCCHHHHHHHHHHHhhcccC
Confidence 5 5555555555555554444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.64 E-value=7.7e-06 Score=69.82 Aligned_cols=263 Identities=10% Similarity=-0.034 Sum_probs=157.3
Q ss_pred hcC-ChHHHHHHHHHhcc--ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcch
Q 040965 7 KNG-DMDSAILLFENMLK--RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 7 ~~g-~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 83 (311)
+.| +++.|..+|++... |. |+++.+..+|++... ..|+...|...+.-....+. ..+
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~--------------~~~e~~~~iferal~----~~ps~~LW~~Y~~f~~~~~~--~~~ 65 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS--------------KDYRSLESLFGRCLK----KSYNLDLWMLYIEYVRKVSQ--KKF 65 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT--------------TCHHHHHHHHHHHST----TCCCHHHHHHHHHHHHHHC------
T ss_pred HcCcchHHHHHHHHHHHHHCCC--------------CCHHHHHHHHHHHhc----cCCCHHHHHHHHHHHHHhCc--hHH
Confidence 456 37788888887743 22 889999999999988 45788888888775544331 246
Q ss_pred hHHHHHHHHhhc-cC-CchHHHHHHHHHHHh----hcCCHHHHHHHHHHccc-c--h-Hh--------------------
Q 040965 84 LGKQVHGYILRN-EI-VLSVFMGTALIDLYG----KVGCLERAIRVFKSMVI-K--D-VC-------------------- 133 (311)
Q Consensus 84 ~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~-~--~-~~-------------------- 133 (311)
....+|+..+.. |. +.+..+|...+..+. ..|+++.+..+|++++. | + ..
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHH
Confidence 677888877764 43 336678888777654 34678888888888733 1 0 00
Q ss_pred ----------------------------hHHHHHHHHHcC--CC-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 134 ----------------------------TWNAMISSLASN--SR-----EKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 134 ----------------------------~~~~l~~~~~~~--~~-----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
.|...+..-... |- .+.+..+|+++... .+.+...|...+..+.
T Consensus 146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLI 224 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH
Confidence 111111111111 00 23456677777665 2345677777777788
Q ss_pred ccccHHHHHHHHHHhhccCCCccchh-hH----------------------------------------HHHHHHHHhcC
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIME-HY----------------------------------------GCVVDLLGRAG 217 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~----------------------------------------~~l~~~~~~~g 217 (311)
+.|+.+.|..++++.+.. |... .+ ...+....+.+
T Consensus 225 ~~~~~~~ar~i~erAi~~----P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~ 300 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM----SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR 300 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH----CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC----CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC
Confidence 889999999999998864 3221 11 11122222355
Q ss_pred CHHHHHHHHHhCCCCCC--cchHHHHHHHH-HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 218 LLSEAKEFMRSMPFEPD--ASVLGALLGAC-KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 218 ~~~~A~~~~~~~~~~p~--~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
+.+.|..+|++.. .|. ...|......- ...++.+.|..+|+.+.+..|+++..+...++...+.|+.+.|..+|++
T Consensus 301 ~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er 379 (493)
T 2uy1_A 301 GLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKR 379 (493)
T ss_dssp CHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6777777777762 232 12222212111 1233577788888877776676665666666666777777777777776
Q ss_pred H
Q 040965 295 M 295 (311)
Q Consensus 295 m 295 (311)
.
T Consensus 380 ~ 380 (493)
T 2uy1_A 380 L 380 (493)
T ss_dssp S
T ss_pred H
Confidence 5
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.2e-07 Score=68.10 Aligned_cols=117 Identities=13% Similarity=0.002 Sum_probs=88.1
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCC----------------CccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFE----------------VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
....+......+.+.|+++.|+..|.+.+.... .+.+...|..+..+|.+.|++++|...+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 345677888889999999999999999875300 1112357788888899999999999998887
Q ss_pred -CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch-hHHHHHHHHHhcc
Q 040965 230 -PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC-GRYVVLSNIHAGL 282 (311)
Q Consensus 230 -~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 282 (311)
...| +...|..+..++...|++++|...|+++++++|++. .....+..+..+.
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4445 457788888889999999999999999999999887 3444444444333
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.6e-08 Score=67.43 Aligned_cols=92 Identities=9% Similarity=-0.015 Sum_probs=68.0
Q ss_pred ccccHHHHHHHHHHhhccCC--CccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHH
Q 040965 179 RAQLVELGLELFHSMLGKFE--VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLC 254 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 254 (311)
..|++++|+..|++.++. + .+.+...+..+..+|...|++++|.+.|++. ...| +...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 467888999999998864 2 1234567888888899999999999999887 4345 456677777888889999999
Q ss_pred HHHHHHHHhcCCCchhH
Q 040965 255 HEVGRRLLELQPKHCGR 271 (311)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ 271 (311)
...++++++..|+++..
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 99999999888887643
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-07 Score=65.83 Aligned_cols=104 Identities=15% Similarity=0.013 Sum_probs=80.0
Q ss_pred hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc--------C---------CCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 131 DVCTWNAMISSLASNSREKEALVMFDEMKEK--------G---------LRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 131 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
....+......+.+.|++++|+..|++.... . .+.+...|..+..+|.+.|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888889999999999999988764 0 0113467788888899999999999999998
Q ss_pred hccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc
Q 040965 194 LGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS 236 (311)
Q Consensus 194 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 236 (311)
++. .+.+...|..+..+|...|++++|.+.|++. ...|+..
T Consensus 90 l~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 90 LKR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred Hhc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 864 2334677888889999999999999998887 5556544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.60 E-value=1e-06 Score=62.71 Aligned_cols=127 Identities=9% Similarity=-0.047 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCCC-cH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLRA-NE 167 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 167 (311)
.++..+...|...|++++|+..+++.... ...++..+...+...|++++|.+.+++..+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45566666677777777777777665322 1135556666666677777777776665432 1001 12
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccC---CCc-cchhhHHHHHHHHHhcCCHHHHHHHHHh
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKF---EVV-PIMEHYGCVVDLLGRAGLLSEAKEFMRS 228 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 228 (311)
..+..+...+...|++++|...+++..+.. +.. ....++..+...+...|++++|.+.+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 345555555666666666666666554320 000 0122334444444445555555444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.1e-08 Score=64.97 Aligned_cols=83 Identities=8% Similarity=0.044 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHH
Q 040965 145 NSREKEALVMFDEMKEKGL--RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 145 ~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 222 (311)
.|++++|+..|++..+.+. +.+...+..+..++...|++++|...|+++++. .+-+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 3555555555555554321 112344555555555566666666666555543 111234455555555556666666
Q ss_pred HHHHHhC
Q 040965 223 KEFMRSM 229 (311)
Q Consensus 223 ~~~~~~~ 229 (311)
.+.+++.
T Consensus 81 ~~~~~~a 87 (117)
T 3k9i_A 81 VELLLKI 87 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-07 Score=74.19 Aligned_cols=153 Identities=8% Similarity=0.003 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
....+..+...+.+.|++++|+..|++....+.... .+...++.+++...+. ...|..+..++.+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 345677888999999999999999998754322211 1234455555443331 1367778888899
Q ss_pred cccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc-chHHHHHHH-HHhcCChhHHHH
Q 040965 180 AQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA-SVLGALLGA-CKIHGAVDLCHE 256 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~ 256 (311)
.|++++|+..++++++. .+.+...|..+..+|...|++++|.+.|++. .+.|+. ..+..+... ....+..+.+..
T Consensus 243 ~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998864 2335678888889999999999999999988 556654 344444433 234567788888
Q ss_pred HHHHHHhcCCCch
Q 040965 257 VGRRLLELQPKHC 269 (311)
Q Consensus 257 ~~~~~~~~~~~~~ 269 (311)
.|+++....|.++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 9999888877654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-07 Score=62.50 Aligned_cols=94 Identities=14% Similarity=-0.020 Sum_probs=44.5
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGA 250 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 250 (311)
+...+.+.|++++|...|+++++. .+.+...+..+..++...|++++|...|++. ...| +...+..+...+...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334445555555555555555532 1123344455555555555555555555554 2233 23344445555555555
Q ss_pred hhHHHHHHHHHHhcCCCc
Q 040965 251 VDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~ 268 (311)
+++|...++++++..|.+
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 555555555555555543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-07 Score=79.86 Aligned_cols=121 Identities=9% Similarity=-0.048 Sum_probs=82.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACAR 179 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~ 179 (311)
.+..+...+.+.|++++|++.+++..+ .+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..+|..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334455667778888888888887733 256777888888888888888888888887763 3356777778888888
Q ss_pred cccHHHHHHHHHHhhccCCCcc-chhhHHHHHHH--HHhcCCHHHHHHHHH
Q 040965 180 AQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDL--LGRAGLLSEAKEFMR 227 (311)
Q Consensus 180 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~--~~~~g~~~~A~~~~~ 227 (311)
.|++++|...|+++++. .| +...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888888754 22 23345555544 777788888888877
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.53 E-value=4.4e-07 Score=76.87 Aligned_cols=137 Identities=13% Similarity=0.003 Sum_probs=78.4
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc--c-h---------------HhhHHHHHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI--K-D---------------VCTWNAMISSLA 143 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---------------~~~~~~l~~~~~ 143 (311)
+++|...++...+.. +.....+..+...|.+.|++++|+..|+++.. | + ...|..+..+|.
T Consensus 250 ~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 250 FEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554443322 12345666677777777777777777777632 1 1 345556666666
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEA 222 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 222 (311)
+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++++. .| +...+..+..++.+.++.+++
T Consensus 329 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV---NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---C----CHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666542 224555666666666666666666666666532 23 234555555566666665555
Q ss_pred H
Q 040965 223 K 223 (311)
Q Consensus 223 ~ 223 (311)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.49 E-value=2.4e-07 Score=65.35 Aligned_cols=102 Identities=9% Similarity=-0.083 Sum_probs=70.8
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCccc-------------hhhHHHHHHHHHhcCCHHHHHHHHHhC-CC----
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPI-------------MEHYGCVVDLLGRAGLLSEAKEFMRSM-PF---- 231 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---- 231 (311)
+......+.+.|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 344444555666666666666665532 222 226777777888888888888777766 44
Q ss_pred ---CCCc-chH----HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHH
Q 040965 232 ---EPDA-SVL----GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVV 274 (311)
Q Consensus 232 ---~p~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 274 (311)
.|+. ..| .....++...|++++|+..|++++++.|.+...+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 6754 566 778888999999999999999999988887654443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=8e-08 Score=64.07 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=69.6
Q ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc------hhHHH
Q 040965 202 IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH------CGRYV 273 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 273 (311)
+...+..+...+...|++++|.+.|++. ...| +...+..+..++...|++++|...++++++..|++ ..++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4456777777888888888888888877 3334 45667777778888889999999999988888887 66677
Q ss_pred HHHHHHhccchhHHHHHHHHH
Q 040965 274 VLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 274 ~l~~~~~~~g~~~~A~~~~~~ 294 (311)
.+..++...|+++.|...+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 777777777777776655543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.40 E-value=5.4e-06 Score=68.07 Aligned_cols=118 Identities=9% Similarity=-0.058 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHccc----------------c---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVI----------------K---DVCTWNAMISSLASNSREKEALVMFDEMKEKG 162 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 162 (311)
..+..+...+.+.|++++|+..|++... . +..+|..+..+|.+.|++++|++.+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3456677778888888888888877654 1 23455555556666666666666666655542
Q ss_pred CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCCHHHHH
Q 040965 163 LRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGLLSEAK 223 (311)
Q Consensus 163 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 223 (311)
+.+...+..+..+|...|++++|...|+++++. .| +...+..+..++...++.+++.
T Consensus 304 -p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l---~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 304 -PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 224455555555666666666666666665532 22 3334444445555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=3.6e-05 Score=66.80 Aligned_cols=168 Identities=12% Similarity=-0.022 Sum_probs=108.8
Q ss_pred HHHHHHHHHHcccc---hHhhHHHHHHHHHcCCC----------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc--
Q 040965 117 LERAIRVFKSMVIK---DVCTWNAMISSLASNSR----------EKEALVMFDEMKEKGLRANEITFVAVLTACARAQ-- 181 (311)
Q Consensus 117 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-- 181 (311)
.++|++.++++..- +..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-...+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 34556666655332 23344444444444444 677777777776653 225566666666666667
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhc----------
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG-LLSEAKEFMRSM-PFEP-DASVLGALLGACKIH---------- 248 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---------- 248 (311)
++++++..++++++. .+-+..+|+.-...+.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 557777777777754 2234556666666666666 677777777776 4444 445555555554442
Q ss_pred ----CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHH
Q 040965 249 ----GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNR 287 (311)
Q Consensus 249 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 287 (311)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999988887554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.3e-06 Score=70.44 Aligned_cols=119 Identities=10% Similarity=-0.076 Sum_probs=65.2
Q ss_pred hhcCcchhHHHHHHHHhhc-----c-CCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhhHHHH
Q 040965 77 VNEGGLYLGKQVHGYILRN-----E-IVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCTWNAM 138 (311)
Q Consensus 77 ~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l 138 (311)
..+|++++|+.++++.++. | -.| ...+++.|...|...|++++|+.++++.... ...+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3466667776666665543 1 112 2456666666677777777766666655211 23456666
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHc-----CC-CCc-HHHHHHHHHHHHccccHHHHHHHHHHhhc
Q 040965 139 ISSLASNSREKEALVMFDEMKEK-----GL-RAN-EITFVAVLTACARAQLVELGLELFHSMLG 195 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 195 (311)
...|...|++++|+.++++..+. |. .|+ ..+...+..++...+.+++|..++.++.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666665421 21 121 22334444555566666666666665543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.33 E-value=2.8e-06 Score=54.10 Aligned_cols=80 Identities=23% Similarity=0.222 Sum_probs=60.0
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHh
Q 040965 203 MEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHA 280 (311)
Q Consensus 203 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 280 (311)
...+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|...++++.+..|.+..++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456667777777888888888887776 3333 44566777778888888888888888888888888777877777765
Q ss_pred cc
Q 040965 281 GL 282 (311)
Q Consensus 281 ~~ 282 (311)
+.
T Consensus 89 ~~ 90 (91)
T 1na3_A 89 KQ 90 (91)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.30 E-value=3.6e-06 Score=54.97 Aligned_cols=60 Identities=22% Similarity=0.200 Sum_probs=29.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
.+..+...+...|++++|...|+++++.+|++..+|..++.+|...|++++|...+++..
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444445555555555555555555444445555555555555555555544443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-06 Score=56.71 Aligned_cols=94 Identities=11% Similarity=0.018 Sum_probs=57.4
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-------hh
Q 040965 132 VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-------ME 204 (311)
Q Consensus 132 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 204 (311)
...+..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++.++. .|+ ..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~ 79 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY---TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CSSTTSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCccHHHHHHH
Confidence 4456666677777777777777777766652 235566667777777777777777777777643 333 33
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
.+..+..++...|+++.|.+.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 3444455555555555554444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.9e-06 Score=55.01 Aligned_cols=82 Identities=13% Similarity=0.010 Sum_probs=62.2
Q ss_pred HHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHH
Q 040965 184 ELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRL 261 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 261 (311)
+.|+..|++.++. .+.+...+..+...|...|++++|.+.|++. ...| +...+..+...+...|++++|...|+++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567778887753 2334567788888888899999999888887 3344 4567777778888889999999999988
Q ss_pred HhcCCC
Q 040965 262 LELQPK 267 (311)
Q Consensus 262 ~~~~~~ 267 (311)
++..|.
T Consensus 80 l~~~~~ 85 (115)
T 2kat_A 80 LAAAQS 85 (115)
T ss_dssp HHHHHH
T ss_pred HHhccc
Confidence 887664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=7.2e-05 Score=64.95 Aligned_cols=155 Identities=9% Similarity=-0.027 Sum_probs=122.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcccc----------HHHHHHHHHHhhccCCCccchhhHHHHHHHHH
Q 040965 145 NSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQL----------VELGLELFHSMLGKFEVVPIMEHYGCVVDLLG 214 (311)
Q Consensus 145 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (311)
....++|++.++++...+ +-+...|+.--.++...|+ +++++..++.+++. .+-+..+|..-..++.
T Consensus 42 ~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 42 GELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 344578899999999873 2256677776666777777 89999999999974 2345677887778888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc-------
Q 040965 215 RAG--LLSEAKEFMRSM-PFEP-DASVLGALLGACKIHG-AVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL------- 282 (311)
Q Consensus 215 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 282 (311)
+.+ +++++.+.++++ ...| |...|+.-...+...| .++++.+.++++++.+|.+..+|.....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999999 3344 6677877777777888 899999999999999999999999888776653
Q ss_pred -------chhHHHHHHHHHHHHccCCC
Q 040965 283 -------ERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 283 -------g~~~~A~~~~~~m~~~~~~~ 302 (311)
+.++++.+.+++....++..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~ 225 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPND 225 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCC
Confidence 77899999999988766543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=3e-06 Score=59.62 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc-----------hhHHHHHHHHHHHHccC
Q 040965 251 VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE-----------RWNRATDLRKAMVEAGI 300 (311)
Q Consensus 251 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~m~~~~~ 300 (311)
+++|+..|+++++++|+...+|..++.+|...| ++++|...|++..+.+.
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 567777777777777777777777777777664 77777777777776544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.9e-05 Score=52.78 Aligned_cols=108 Identities=5% Similarity=-0.144 Sum_probs=71.5
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREKEALVMF 155 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~ 155 (311)
+.++|.+.|++..+.| .|+.. |...|...+.+++|++.|++..+. ++..+..+...|.. .+++++|.++|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4677777777777666 22222 666666666777777777766433 56666667777766 67777777777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHc----cccHHHHHHHHHHhhcc
Q 040965 156 DEMKEKGLRANEITFVAVLTACAR----AQLVELGLELFHSMLGK 196 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 196 (311)
++..+.| +...+..|...|.. .++.++|..+|++..+.
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 7777664 44556666666666 67777777777777654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.9e-05 Score=50.55 Aligned_cols=69 Identities=17% Similarity=0.098 Sum_probs=57.2
Q ss_pred CCcchHHHHHHHHHhcCC---hhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 233 PDASVLGALLGACKIHGA---VDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 233 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
+|...+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|...|+++.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666777777654444 789999999999999999999999999999999999999999999887665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.12 E-value=1.4e-05 Score=53.47 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 150 EALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+|++.|++..+.. +.+...+..+...+...|++++|...|++.++. .+.+...+..+..+|...|++++|.+.|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3455555555442 224555666666666666666666666666543 1223445556666666666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.7e-05 Score=54.13 Aligned_cols=111 Identities=8% Similarity=-0.123 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSE 221 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 221 (311)
+++++|.++|++..+.| .|+.. +...|...+.+++|..+|++..+. + +...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 45666666666666665 22222 445555555666666666666543 2 33445555555555 556666
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcC
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKI----HGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 265 (311)
|.++|++.-..-+...+..|...|.. .+++++|..+|+++.+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666655112344445555555555 555666666666555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-05 Score=56.52 Aligned_cols=125 Identities=13% Similarity=0.128 Sum_probs=72.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHH----------HHHHHHHHhhccCCCccc-hhhHHHHHHH
Q 040965 144 SNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVE----------LGLELFHSMLGKFEVVPI-MEHYGCVVDL 212 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~----------~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 212 (311)
+.+.+++|.+.+++..+.. +.+...|..+..++...++++ +|+..|++.++ +.|+ ..+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~---ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL---IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH---hCcCcHHHHHHHHHH
Confidence 3455666666666666553 235566666666666665543 55555555553 2332 3345555555
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 213 LGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
|...|.+ .|+.. ...|++++|...|+++++++|++. .|...+.. .++|.+++
T Consensus 90 y~~lg~l------------~P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~~------~~ka~el~ 141 (158)
T 1zu2_A 90 YTSFAFL------------TPDET---------EAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEM------TAKAPQLH 141 (158)
T ss_dssp HHHHHHH------------CCCHH---------HHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHH------HHTHHHHH
T ss_pred HHHhccc------------Ccchh---------hhhccHHHHHHHHHHHHHhCCCCH-HHHHHHHH------HHhCHhcc
Confidence 5444432 22210 112689999999999999999986 45444433 35666666
Q ss_pred HHHHHccC
Q 040965 293 KAMVEAGI 300 (311)
Q Consensus 293 ~~m~~~~~ 300 (311)
-++...+.
T Consensus 142 ~~~~~~~~ 149 (158)
T 1zu2_A 142 AEAYKQGL 149 (158)
T ss_dssp HHHHHSSS
T ss_pred Cccccccc
Confidence 66665543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-05 Score=52.09 Aligned_cols=82 Identities=12% Similarity=0.039 Sum_probs=59.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-cc-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchh
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM-PFEPD-AS-VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERW 285 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 285 (311)
....+...|++++|.+.+++. ...|+ .. .+..+...+...|++++|...|+++++.+|++..++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 456677888888888888887 33453 45 67777778888899999999999999888887766532 566
Q ss_pred HHHHHHHHHHHHc
Q 040965 286 NRATDLRKAMVEA 298 (311)
Q Consensus 286 ~~A~~~~~~m~~~ 298 (311)
.++...|++....
T Consensus 78 ~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 78 MDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHCCTTHH
T ss_pred HHHHHHHHHHhcc
Confidence 6677766655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.98 E-value=3.3e-05 Score=48.89 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 235 ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 235 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
...+..+...+...|++++|...++++++..|.+..++..++.++.+.|++++|...+++..+...
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 74 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 356677778899999999999999999999999998999999999999999999999999988654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-05 Score=64.94 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=64.6
Q ss_pred hcCCHHHHHHHHHhC--------C-CCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCch---hHHHHHH
Q 040965 215 RAGLLSEAKEFMRSM--------P-FEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLE-----LQPKHC---GRYVVLS 276 (311)
Q Consensus 215 ~~g~~~~A~~~~~~~--------~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~~~~l~ 276 (311)
..|++++|..++++. + ..|+. .+++.|...|...|++++|+.+++++++ .+|+++ .+++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346788888887665 1 22322 6678888999999999999999999885 455554 4688899
Q ss_pred HHHhccchhHHHHHHHHHHHH
Q 040965 277 NIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 277 ~~~~~~g~~~~A~~~~~~m~~ 297 (311)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.4e-05 Score=65.36 Aligned_cols=92 Identities=8% Similarity=-0.114 Sum_probs=72.4
Q ss_pred ccccHHHHHHHHHHhhccC--CC---ccc-hhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCc-chHHHHH
Q 040965 179 RAQLVELGLELFHSMLGKF--EV---VPI-MEHYGCVVDLLGRAGLLSEAKEFMRSM---------PFEPDA-SVLGALL 242 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~--~~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 242 (311)
..|++++|..++++.++.. -+ .|+ ..+++.|..+|...|++++|..++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4578899999998876531 11 233 477899999999999999999998877 233443 6688899
Q ss_pred HHHHhcCChhHHHHHHHHHHh-----cCCCchh
Q 040965 243 GACKIHGAVDLCHEVGRRLLE-----LQPKHCG 270 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 270 (311)
..|..+|++++|+.+++++++ .+|+++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 999999999999999999986 6788763
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.90 E-value=4.7e-05 Score=49.48 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
..+..+..+|...|++++|++.|++..+.. +.+...|..+..+|...|++++|...|++.+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444444332 1123344444444444444444444444443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=9.7e-05 Score=61.75 Aligned_cols=97 Identities=13% Similarity=0.044 Sum_probs=73.9
Q ss_pred HHHHHccccHHHHHHHHHHhhccCC--C---cc-chhhHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCc-ch
Q 040965 174 LTACARAQLVELGLELFHSMLGKFE--V---VP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM---------PFEPDA-SV 237 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~ 237 (311)
+..+.+.|++++|+.++++.++... + .| ...+++.|+..|...|++++|+.++++. ...|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4456678899999999998875421 1 12 3467888999999999999999998876 223333 56
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCchh
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLE-----LQPKHCG 270 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 270 (311)
++.|...|...|++++|+.+++++++ .+|+++.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 77888889999999999999999885 6787763
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=8e-05 Score=62.26 Aligned_cols=88 Identities=13% Similarity=0.152 Sum_probs=71.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-C-----CCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHh-----cCCCch---hH
Q 040965 210 VDLLGRAGLLSEAKEFMRSM-P-----FEPDA----SVLGALLGACKIHGAVDLCHEVGRRLLE-----LQPKHC---GR 271 (311)
Q Consensus 210 ~~~~~~~g~~~~A~~~~~~~-~-----~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~ 271 (311)
+..+.+.|++++|.+++++. . ..|+. .+++.+...|...|++++|+.+++++++ .+|+++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 45566889999999998766 1 22332 5678888999999999999999999985 455554 46
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
++.|+..|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999998764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0001 Score=47.54 Aligned_cols=61 Identities=15% Similarity=0.248 Sum_probs=55.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCchh-HHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKHCG-RYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
....+...|++++|...++++++..|++.. .+..++.+|...|++++|...|++..+.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 455678999999999999999999999998 9999999999999999999999999987654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.006 Score=49.24 Aligned_cols=141 Identities=8% Similarity=-0.052 Sum_probs=88.4
Q ss_pred chHhhHHHHHHHHH--c---CCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHc---c-----ccHHHHHHHHHHhhc
Q 040965 130 KDVCTWNAMISSLA--S---NSREKEALVMFDEMKEKGLRAN-EITFVAVLTACAR---A-----QLVELGLELFHSMLG 195 (311)
Q Consensus 130 ~~~~~~~~l~~~~~--~---~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~---~-----~~~~~a~~~~~~~~~ 195 (311)
.+...|...+.+.. . ..+..+|..+|++..+. .|+ ...+..+.-++.. . .........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 36667777665533 2 23457888888888876 453 3444433333321 0 111111122222211
Q ss_pred cCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHH
Q 040965 196 KFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV 273 (311)
Q Consensus 196 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (311)
....+.+..+|..+...+...|++++|.+.++++ ...|+...|..+...+...|++++|.+.++++..++|..+ +|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~ 347 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLY 347 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHH
Confidence 1123456677777777777789999999999888 4457766666667778889999999999999999988875 443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0015 Score=52.70 Aligned_cols=69 Identities=10% Similarity=0.063 Sum_probs=32.3
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcch
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASV 237 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 237 (311)
+..+|..+...+...|+++.|...+++++.. .|+...|..+...+.-.|++++|.+.|++. ...|...+
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~L---n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDL---EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 3444444444444445555555555555432 244444444444555555555555555444 33444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.022 Score=51.73 Aligned_cols=104 Identities=16% Similarity=0.125 Sum_probs=66.1
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
......|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+....
T Consensus 660 ~~~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3456678888888887665 3557888888888889999999988887642 2233444444666665555
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
+-+..... | -++.-..+|.+.|++++|.+++.+++
T Consensus 729 ~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 729 LAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 54444332 1 13334445556677777766665553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00074 Score=52.33 Aligned_cols=53 Identities=8% Similarity=0.031 Sum_probs=27.0
Q ss_pred CChhHHHHHHHHHHhcCCCc-hhHHHHHHHHHhcc-chhHHHHHHHHHHHHccCC
Q 040965 249 GAVDLCHEVGRRLLELQPKH-CGRYVVLSNIHAGL-ERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~ 301 (311)
|+.++|.+.|+++++++|+. ..++...++.+++. |+.++|.+.+++.+.....
T Consensus 218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 55555555555555555542 44555555555542 5555555555555544443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0016 Score=42.51 Aligned_cols=71 Identities=21% Similarity=0.121 Sum_probs=48.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-----P----FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
.+-.|...+...|+++.|...|+.. . -.+....+..|..++.+.|+++.|...++++.+..|++..+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445566666666666666666554 0 012345677788888889999999999999988888886554433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=46.07 Aligned_cols=71 Identities=11% Similarity=-0.042 Sum_probs=38.4
Q ss_pred cchhhHHHHHHHHHhcC---CHHHHHHHHHhC-CCC-C--CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 201 PIMEHYGCVVDLLGRAG---LLSEAKEFMRSM-PFE-P--DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 201 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
++..+.-.+..++++.+ +.+++..++++. ... | +...+..|.-+|.+.|++++|.+.++.+++..|++..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444445555544 344555555554 111 3 12333444556677777777777777777777766533
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0043 Score=56.32 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 166 NEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+...|..+...+.+.++++.|.+.|.++
T Consensus 680 ~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 680 AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3445555555555555555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.029 Score=37.89 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=92.2
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
+.-.|..++..++..+..... +..-||.++.-....-+-+-..++++.+-+.+++.+ +|+...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHH
Confidence 345678888888888776542 445555565555555555666666666654433332 344444
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
....+-.++ .+...+..-+.....+|+-+.-.+++..+....+.++.....+..+|.+.|+..+|.+++.+.-+.|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 444444443 334445556677778888888888888876666666678888888888888888888888888887764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0028 Score=44.10 Aligned_cols=81 Identities=9% Similarity=-0.043 Sum_probs=63.8
Q ss_pred HHHHHHHhC--CCCCCcchHHHHHHHHHhcC---ChhHHHHHHHHHHhcC-C-CchhHHHHHHHHHhccchhHHHHHHHH
Q 040965 221 EAKEFMRSM--PFEPDASVLGALLGACKIHG---AVDLCHEVGRRLLELQ-P-KHCGRYVVLSNIHAGLERWNRATDLRK 293 (311)
Q Consensus 221 ~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 293 (311)
.+.+-|.+. .-.++..+.-.+..++++.+ +++++..++++..+.+ | ....++..|.-+|.+.|++++|.++++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 344444443 22467777777888888888 7779999999999988 7 456788899999999999999999999
Q ss_pred HHHHccCC
Q 040965 294 AMVEAGIR 301 (311)
Q Consensus 294 ~m~~~~~~ 301 (311)
.+.+..+.
T Consensus 96 ~lL~ieP~ 103 (152)
T 1pc2_A 96 GLLQTEPQ 103 (152)
T ss_dssp HHHHHCTT
T ss_pred HHHhcCCC
Confidence 99886543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.14 Score=44.73 Aligned_cols=114 Identities=11% Similarity=0.013 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHH----HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEI----TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
.+.+.|...+....+... .+.. ....+.......+...++...+...... .++.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 477888888887765432 2222 2222232333444345566666665432 2232233344444456788888
Q ss_pred HHHHHHhCCCCC-Ccc-hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 222 AKEFMRSMPFEP-DAS-VLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 222 A~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
|.+.|+.|...+ +.. ..--+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888888884332 222 223344566778888888888888864
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0044 Score=40.29 Aligned_cols=67 Identities=13% Similarity=-0.096 Sum_probs=56.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 234 DASVLGALLGACKIHGAVDLCHEVGRRLLEL-------QPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 234 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
+...+..+...+...|+++.|...++++.+. ++....++..|+.++.+.|++++|..++++..+..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 4455667888899999999999999999873 234567899999999999999999999999987544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.005 Score=39.12 Aligned_cols=66 Identities=12% Similarity=0.026 Sum_probs=33.9
Q ss_pred chhhHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 202 IMEHYGCVVDLLGRAGL---LSEAKEFMRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 202 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
++..+..+..++...++ .++|..++++. ...|+. .....+...+...|++++|...|+++.+.+|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34445555554443332 45566665555 333432 33444444555666666666666666665555
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.046 Score=39.03 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=57.4
Q ss_pred HHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHH
Q 040965 109 DLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLE 188 (311)
Q Consensus 109 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 188 (311)
....+.|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3345567777776666554 3455677777777777777777777665431 2223333444555555444
Q ss_pred HHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 189 LFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
+-+....+ | -++.-..++...|+++++.++|.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 43333322 1 24444455556677777777766665
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.075 Score=35.91 Aligned_cols=84 Identities=12% Similarity=-0.041 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 114 VGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 114 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+|++......+-.+.. +.......+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..+|.+++.++
T Consensus 74 C~NlKrVi~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 3444444444443322 2334455566777778888888887775432 3667777777778888888888888888887
Q ss_pred hccCCCc
Q 040965 194 LGKFEVV 200 (311)
Q Consensus 194 ~~~~~~~ 200 (311)
.++ |++
T Consensus 152 C~k-G~k 157 (172)
T 1wy6_A 152 CKK-GEK 157 (172)
T ss_dssp HHT-TCH
T ss_pred HHh-hhH
Confidence 766 554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.1 Score=37.24 Aligned_cols=128 Identities=13% Similarity=0.103 Sum_probs=79.1
Q ss_pred hhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcch
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 83 (311)
...+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... ... ..++. .. .|+.+
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~-L~~Ly--~~---tg~~e 77 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDK-LSFLY--LV---TGDVN 77 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHH-HHHHH--HH---HTCHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHH-HHHHH--HH---hCCHH
Confidence 345789999999988776 4677899999999999999999999988743 111 12221 12 33355
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
...++-+.....| -++....++.-.|+++++.++|.+....+.... .....|..+.|.++.+++
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~-----~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA-----VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH-----HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH-----HHHHcCcHHHHHHHHHHh
Confidence 4444444444333 124455666777888888888876643321111 111245566666666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.62 E-value=0.39 Score=43.90 Aligned_cols=222 Identities=12% Similarity=0.006 Sum_probs=104.1
Q ss_pred HHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccC-------CchHHHHHH-
Q 040965 35 GFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI-------VLSVFMGTA- 106 (311)
Q Consensus 35 ~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~- 106 (311)
+....|+.++++.+++.....+ ...+...-..-+-++.... .|..+++..++...+...- .+....-..
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~--~s~~~~ik~GAllaLGli~-ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGS--RASSRFIKGGSLYGLGLIY-AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTS--CCSCHHHHHHHHHHHHHHT-TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhcccc--CCCcHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 3456677777777777665421 1123333222222222222 3334456666665554321 111222222
Q ss_pred -HHHHHhhcCCHHHHHHHHHHccc-chHh----hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc
Q 040965 107 -LIDLYGKVGCLERAIRVFKSMVI-KDVC----TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA 180 (311)
Q Consensus 107 -l~~~~~~~g~~~~A~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 180 (311)
|..+|...++ +++.+.+..+.. .+.. .-.++...+.-.|+.+....++..+.+.. .-+..-...+.-++...
T Consensus 460 GLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 460 GIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence 3333333444 344444444432 2211 11233344556677777777777665531 11222222233334467
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhH--HHHHHHHHhcCCHHHHHHHHHhCCCCCC--cchHHHHHHHHHhcCChhHHHH
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGLLSEAKEFMRSMPFEPD--ASVLGALLGACKIHGAVDLCHE 256 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~ 256 (311)
|+.+.+..+++.+... ..|....- .++.-+|+..|+.....++++.+...++ +.....+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 7777777777777642 23333222 2334456677777766667776621222 2222222223445566666666
Q ss_pred HHHHHHh
Q 040965 257 VGRRLLE 263 (311)
Q Consensus 257 ~~~~~~~ 263 (311)
+++.+.+
T Consensus 616 lv~~L~~ 622 (963)
T 4ady_A 616 IVQLLSK 622 (963)
T ss_dssp HTTTGGG
T ss_pred HHHHHHh
Confidence 6655443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.084 Score=41.04 Aligned_cols=58 Identities=12% Similarity=-0.010 Sum_probs=26.6
Q ss_pred HHHHHHHHHHc-----cccHHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhc-CCHHHHHHHHHhC
Q 040965 169 TFVAVLTACAR-----AQLVELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRA-GLLSEAKEFMRSM 229 (311)
Q Consensus 169 ~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~ 229 (311)
.|..+...|.. .|+.++|.+.|++.++ +.| +..++....+.++.. |+.+++.+.+++.
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 44444444444 2555555555555543 233 133444444444442 5555555555544
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.03 Score=37.47 Aligned_cols=90 Identities=11% Similarity=-0.076 Sum_probs=48.1
Q ss_pred ccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C--CcchHHHHHHHHHhcCChhH
Q 040965 181 QLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE---AKEFMRSM-PFE-P--DASVLGALLGACKIHGAVDL 253 (311)
Q Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~ 253 (311)
..+..+.+-|...... +. |+..+--.+..++.+..+... ++.+++.+ ... | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344444444444332 22 444444445555555554443 55555555 211 2 11223344456778888888
Q ss_pred HHHHHHHHHhcCCCchhHH
Q 040965 254 CHEVGRRLLELQPKHCGRY 272 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~ 272 (311)
|.+.++.+++..|.+..+.
T Consensus 93 A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHH
Confidence 8888888888888776443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.019 Score=39.55 Aligned_cols=110 Identities=9% Similarity=0.025 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHHccccH------HHHHHHHHHhhccCCCccchh-hHHHHHH------HHHhcCCHHHHHHHHHhC-CC
Q 040965 166 NEITFVAVLTACARAQLV------ELGLELFHSMLGKFEVVPIME-HYGCVVD------LLGRAGLLSEAKEFMRSM-PF 231 (311)
Q Consensus 166 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~-~~ 231 (311)
|..+|-..+...-+.|++ ++..++|+++.. .++|+.. .|...|. .+...++.++|.++|+.+ ..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 667777777777777888 888888888876 4566431 1111111 223457888888888877 21
Q ss_pred --CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 232 --EPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 232 --~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
+- ...|......-.++|+++.|.+++.+++++.|.+.......+.-
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~n 137 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRN 137 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHh
Confidence 11 34444444555678888888888888888888876666555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.1 Score=35.92 Aligned_cols=100 Identities=10% Similarity=0.154 Sum_probs=53.6
Q ss_pred cccHHHHHHHHHHHHhcCCH------hHHHHHHHHhhcCCCCCCCch----HHHHHHHHHhhhhhhcCcchhHHHHHHHH
Q 040965 23 KRDVVSWTSIINGFVRNGCF------GEAICVFKNMMGNVNLVRPNE----ATYVSVLSSCAGLVNEGGLYLGKQVHGYI 92 (311)
Q Consensus 23 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 92 (311)
..|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|..+.--|+.+..-++.++|.++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~---~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA---LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH---SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc---CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34788888888888888988 8888899888774 56653 11222221122222223455555555555
Q ss_pred hhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 040965 93 LRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKS 126 (311)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (311)
++.+ +-=..+|......-.+.|++..|.+++..
T Consensus 87 ~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 87 RANC-KKFAFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 4431 11134444444444444444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.048 Score=48.65 Aligned_cols=125 Identities=15% Similarity=0.194 Sum_probs=81.8
Q ss_pred HHHHHHHHHHcccc-HHHHHHHHHHhhccCCCccchhhH--HHHHHHHHhcCC-HHHHHHHHHhC---------CCCCCc
Q 040965 169 TFVAVLTACARAQL-VELGLELFHSMLGKFEVVPIMEHY--GCVVDLLGRAGL-LSEAKEFMRSM---------PFEPDA 235 (311)
Q Consensus 169 ~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~-~~~A~~~~~~~---------~~~p~~ 235 (311)
....++..+...++ .+.|..+|+++... .|...++ ..++..+...++ --+|.+++.+. ...+..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 34555666666666 58899999998764 4433332 223333333322 22344443322 112211
Q ss_pred c-----------hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 236 S-----------VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 236 ~-----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
. ....-...+...|+++.|+.+-+++....|.+-.+|..|..+|...|+|+.|+-.++.+.
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1 111112446789999999999999999999999999999999999999999999998873
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.89 E-value=5.7e-07 Score=74.02 Aligned_cols=242 Identities=11% Similarity=0.083 Sum_probs=138.5
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
.+.+|+.|..+....+++.+|++.|-+.. |...|..++.++.. .|.+++-...+....+..-.| .+=
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--------Dps~y~eVi~~A~~---~~~~edLv~yL~MaRk~~ke~--~ID 119 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------DPSSYMEVVQAANT---SGNWEELVKYLQMARKKARES--YVE 119 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS--------CCCSSSHHHHHTTT---SSCCTTHHHHHHTTSTTCCST--TTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC--------ChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhccc--ccH
Confidence 45578899999999998888887664431 44456667765443 666888888887666653333 333
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc--------------------CCC
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEK--------------------GLR 164 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------------------~~~ 164 (311)
+.|+-+|++.+++.+-++++. .|+..-...+.+-|...|.++.|.-+|..+... .-.
T Consensus 120 teLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 678899999988776555442 344444444555555555555555444432110 001
Q ss_pred CcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHH
Q 040965 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALL 242 (311)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~ 242 (311)
-+..||..+-.+|...+.+..|...--.++- .|+ -...++..|.+.|.+++-+.+++.. |.+ .....|+-|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIv----had--eL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----HAD--ELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC----CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcc----cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 2445666666677776666665544333331 122 2334556666777777777666665 322 3445566665
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHH
Q 040965 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKA 294 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 294 (311)
-.|++- ++++.++.++.... .-+.+ .++++|.+..-|.++.-++..
T Consensus 271 ILYsKY-~PeKlmEHlklf~s-riNip----KviracE~ahLW~ElvfLY~~ 316 (624)
T 3lvg_A 271 ILYSKF-KPQKMREHLELFWS-RVNIP----KVLRAAEQAHLWAELVFLYDK 316 (624)
T ss_dssp HHHHSS-CTTHHHHHHTTSSS-SSCCT----TTHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHhc-CHHHHHHHHHHHHH-hccHH----HHHHHHHHHhhHHHHHHHHhc
Confidence 555443 44544444443221 12222 466777777777777666553
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.69 Score=38.75 Aligned_cols=185 Identities=8% Similarity=0.025 Sum_probs=116.4
Q ss_pred CChHHHHHHHHHhccc---------cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhh-h
Q 040965 9 GDMDSAILLFENMLKR---------DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLV-N 78 (311)
Q Consensus 9 g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~-~ 78 (311)
|++++|++.+-.+.+. .......++..|...|+++...+.+..+....+ ..+.. ...++..+.... .
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-QLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-TSHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-hhHHH--HHHHHHHHHHHHhc
Confidence 6788888777555321 355678899999999999999888877655331 33332 223333332211 1
Q ss_pred cCcch--hHHHHHHHHhh--cc-CCc---hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHH
Q 040965 79 EGGLY--LGKQVHGYILR--NE-IVL---SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISS 141 (311)
Q Consensus 79 ~~~~~--~a~~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~ 141 (311)
....+ .-..+.+.... .| +-. .......|...|...|++.+|..++.++... -...+...+..
T Consensus 107 ~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp HCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 11111 12222222211 11 111 2334467889999999999999999987321 24567777888
Q ss_pred HHcCCCHHHHHHHHHHHHH----cCCCCc--HHHHHHHHHHHHccccHHHHHHHHHHhhcc
Q 040965 142 LASNSREKEALVMFDEMKE----KGLRAN--EITFVAVLTACARAQLVELGLELFHSMLGK 196 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 196 (311)
|...+++.+|..++++... ....|+ ...+...+..+...+++.+|-..|.++...
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9999999999999998642 222232 235566677788889999998888887654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.039 Score=45.37 Aligned_cols=67 Identities=16% Similarity=-0.013 Sum_probs=50.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH-----ccCCCCCc
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE-----AGIRKIPA 305 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 305 (311)
..++..+...|+.+++...+..+...+|-+...+..++.++.+.|+..+|.+.|+++.+ .|+.|.+.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34556667788888888888888888888777888888888888888888888877653 47766554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.084 Score=35.32 Aligned_cols=87 Identities=16% Similarity=0.089 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH---HHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL---GLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 220 (311)
.....+.+.|.+....|. |+..+-..+..++.++.+... ++.+++.+.+. + .| .....-.|.-++.+.|+++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334445555555544443 555665566666776665554 77777777654 2 23 2334445566777888888
Q ss_pred HHHHHHHhC-CCCCCc
Q 040965 221 EAKEFMRSM-PFEPDA 235 (311)
Q Consensus 221 ~A~~~~~~~-~~~p~~ 235 (311)
+|.+.++.+ .+.|+.
T Consensus 92 ~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhCCCC
Confidence 888887777 555644
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.84 Score=38.24 Aligned_cols=90 Identities=13% Similarity=0.185 Sum_probs=52.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-----CCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHh---cCCCch----hH
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSM-----PFEPD---ASVLGALLGACKIHGAVDLCHEVGRRLLE---LQPKHC----GR 271 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~----~~ 271 (311)
..|...|...|++.+|.+++..+ +..+. ...+...++.|...+++..|..+++++.. ..+.++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45666777777777777777666 11111 12344455667777777777777777642 112211 24
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHH
Q 040965 272 YVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 272 ~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
|...+..+...++|.+|.+.|.+..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556666666677777766666554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.11 E-value=2 Score=39.48 Aligned_cols=253 Identities=10% Similarity=-0.043 Sum_probs=136.5
Q ss_pred hhhcCChHHHHHHHHHhcc----ccHH--HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc----hHHHHHHHH-Hh
Q 040965 5 YVKNGDMDSAILLFENMLK----RDVV--SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN----EATYVSVLS-SC 73 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~----~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~----~~~~~~ll~-~~ 73 (311)
....|+.+++..+++.... .+.. .=..+.-+....|..+++..++.........+.-+ .......+. +.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 3456788888888877654 2222 22233334455555567888777766432000001 111122221 11
Q ss_pred hhhhhcCcchhHHHHHHHHhhccCCchH--HHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCH
Q 040965 74 AGLVNEGGLYLGKQVHGYILRNEIVLSV--FMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSRE 148 (311)
Q Consensus 74 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 148 (311)
...+ .+ -+++.+.+..++...- +.. ..-.+|...+...|+-+-...++..+.+. +..-...+.-++...|+.
T Consensus 464 a~~G-S~-~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMG-SA-NIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTT-CC-CHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HhcC-CC-CHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 1122 22 3455566655554321 111 12224455566778877777777665332 222233344455578899
Q ss_pred HHHHHHHHHHHHcCCCCcHHHH--HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHH
Q 040965 149 KEALVMFDEMKEKGLRANEITF--VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFM 226 (311)
Q Consensus 149 ~~a~~~~~~m~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 226 (311)
+.+..+++.+... ..|....- .++.-+|+..|+.....+++..+.+. ...++.....+.-++...|+.+.+.+++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 9999998888764 23322222 23445688899988888899888763 3334444444445555677777777777
Q ss_pred HhC--CCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHh
Q 040965 227 RSM--PFEPDASVLGALLGACKIHGAV-DLCHEVGRRLLE 263 (311)
Q Consensus 227 ~~~--~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 263 (311)
+.+ ...|.+..-..+.-+....|.. .++...+..+..
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 766 2234443333444444555544 567778887763
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.06 E-value=7.4e-06 Score=67.61 Aligned_cols=232 Identities=10% Similarity=0.011 Sum_probs=151.4
Q ss_pred hhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcch
Q 040965 4 GYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLY 83 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 83 (311)
++.+.|++.+|++.| +...|+..|..+|.+..+.|.+++-++.+....+.. -.|... +.|+-+|+...+.++++
T Consensus 63 AqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~ID--teLi~ayAk~~rL~elE 136 (624)
T 3lvg_A 63 AQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE--TELIFALAKTNRLAELE 136 (624)
T ss_dssp HTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTT--HHHHHHHHTSCSSSTTT
T ss_pred HHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccH--HHHHHHHHhhCcHHHHH
Confidence 344556666666555 233477788899999999999999999998887755 344433 45676777665443332
Q ss_pred hHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc------------------------ccchHhhHHHHH
Q 040965 84 LGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM------------------------VIKDVCTWNAMI 139 (311)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------------~~~~~~~~~~l~ 139 (311)
+. + -.||..-.....+-|...|.++.|.-+|..+ ...++.||..+-
T Consensus 137 ef---l-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~ 206 (624)
T 3lvg_A 137 EF---I-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVC 206 (624)
T ss_dssp ST---T-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHT
T ss_pred HH---H-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 21 1 1244433445666666666666666666544 122678999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCH
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLL 219 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 219 (311)
.+|...+++.-|.-.--.+.- .|| -...++..|-..|.+++-+.+++.-+.. -....-.|+-|.-.|++- ++
T Consensus 207 ~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 207 FACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp HHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHhc-CH
Confidence 999999988777655444432 222 2335677889999999999999998832 245667888888777654 67
Q ss_pred HHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 040965 220 SEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLL 262 (311)
Q Consensus 220 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 262 (311)
++-++.++-.-.+-|.+ .++++|....-+.++.-++.+.-
T Consensus 279 eKlmEHlklf~sriNip---KviracE~ahLW~ElvfLY~~yd 318 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIP---KVLRAAEQAHLWAELVFLYDKYE 318 (624)
T ss_dssp THHHHHHTTSSSSSCCT---TTHHHHTTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccHH---HHHHHHHHHhhHHHHHHHHhcch
Confidence 77777776652222222 35778877777777777766543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.13 Score=36.17 Aligned_cols=110 Identities=7% Similarity=-0.044 Sum_probs=53.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHccc-----ch-------HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC-CCC-cHHHHHH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVI-----KD-------VCTWNAMISSLASNSREKEALVMFDEMKEKG-LRA-NEITFVA 172 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~-----~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ 172 (311)
-+..+...|.++.|+-+.+.+.. ++ ..++..+.+++...|++..|...|++..+.. ..+ +..+...
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~ 105 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS 105 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 35556666777777766665421 11 1244556666777777777777777654321 111 1111111
Q ss_pred HHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 173 VLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 173 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
+. .....+. .....++.+.--.+..+|.+.+++++|+.+++.++
T Consensus 106 ~~---~~ss~p~-----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 106 TG---NSASTPQ-----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred cc---ccCCCcc-----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 10 0000000 00122333444456677777888888888777773
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.83 E-value=1.1 Score=40.24 Aligned_cols=111 Identities=13% Similarity=0.093 Sum_probs=74.2
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCC-HHHHHHHHHHccc-----------chH----------hhHHHHH
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGC-LERAIRVFKSMVI-----------KDV----------CTWNAMI 139 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~-----------~~~----------~~~~~l~ 139 (311)
.+.+..+++++.+..+..+......++..+...++ --+|.+++.+..+ .+. .....-.
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa 344 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQT 344 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHH
Confidence 57899999998887543333333344444444332 2345555544421 111 1122224
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRA-NEITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
..+...|+++-|+++-++.... .| +-.+|..|..+|...|+++.|+-.++.+-
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4567789999999999998876 55 57899999999999999999999988873
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=94.62 E-value=0.48 Score=30.04 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHcCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 142 LASNS-REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 142 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
+-+.. |.-+..+-++.+......|+.....+.+.+|.+.+++..|.++|+-++.+.+.. ..+|..+++
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lq 87 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ 87 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHH
Confidence 33444 566777788888888888999999999999999999999999999888764433 445777664
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.60 E-value=1.4 Score=35.14 Aligned_cols=169 Identities=14% Similarity=0.069 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHH----HHHHHcCCCCcHHHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMF----DEMKEKGLRANEITFVAVLTAC 177 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~m~~~~~~~~~~~~~~l~~~~ 177 (311)
.+|.++..-|.+.+++++|++++-.- ...+.+.|+...|-++. +-+.+.++++|......++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45567777788999999999886432 33455667766655554 4555678888888888887776
Q ss_pred HccccHH-HHHHHHHHhhcc---CC--CccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 040965 178 ARAQLVE-LGLELFHSMLGK---FE--VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAV 251 (311)
Q Consensus 178 ~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 251 (311)
.....-+ .=.++++++++- +| ..-++.....+...|.+.+++.+|...|- .+..+....+..++.-+...+.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~- 182 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE- 182 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC-
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC-
Confidence 6544311 112233333211 12 22355566778899999999999988884 3434444566555544433332
Q ss_pred hHHHHHHHHHHhcCCCchhHHH-HHHHHHhccchhHHHHHHHHHHHH
Q 040965 252 DLCHEVGRRLLELQPKHCGRYV-VLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
|.....|. ..+--|...++...|..+++...+
T Consensus 183 --------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 --------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33333333 344556777788888887776654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.67 Score=38.06 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=25.7
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHh
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSM 193 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 193 (311)
+..+...|++++|...+..+.... +.++..+..++.++.+.|+..+|++.|+.+
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444555555555554444331 224445555555555555555555554443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.91 Score=30.98 Aligned_cols=72 Identities=10% Similarity=-0.045 Sum_probs=47.5
Q ss_pred ccchhhHHHHHHHHHhcCC---HHHHHHHHHhC-CCCC-Cc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 200 VPIMEHYGCVVDLLGRAGL---LSEAKEFMRSM-PFEP-DA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.|+..+--.+..++.+..+ ..+++.+++.+ ...| +. .....|.-++.+.|++++|.++.+.+++..|++..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4555555556666666554 44677777777 2234 22 333445567888888888888888888888887643
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.70 E-value=1.2 Score=42.36 Aligned_cols=122 Identities=5% Similarity=-0.167 Sum_probs=83.9
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCC---------------
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPD--------------- 234 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--------------- 234 (311)
.++..+...+..+.+.++..-.. .++...-.+..+|...|++++|.++|++. ++..+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555666677776665443332 13323345677888999999999999887 22111
Q ss_pred --------cchHHHHHHHHHhcCChhHHHHHHHHHHhcCC-Cch----hHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 235 --------ASVLGALLGACKIHGAVDLCHEVGRRLLELQP-KHC----GRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 235 --------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
..-|..++..+.+.+.++.+.++-+.+++..+ ++. ..|..+...+...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence 12356677788889999999999888887443 322 257788899999999999998887765543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=93.41 E-value=1.2 Score=30.05 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=59.4
Q ss_pred HHcCC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHH
Q 040965 142 LASNS-REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 142 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 220 (311)
+.+.. |.-+..+-++.+...+..|+.......+.+|.+.+++..|.++|+-++.+.+.. ..+|..+++
T Consensus 62 F~~~~iD~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lq--------- 130 (152)
T 2y69_E 62 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQ--------- 130 (152)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHH---------
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHH---------
Confidence 33444 556677788888888899999999999999999999999999999998764433 446777764
Q ss_pred HHHHHHHhCCC
Q 040965 221 EAKEFMRSMPF 231 (311)
Q Consensus 221 ~A~~~~~~~~~ 231 (311)
+-.-+++++|+
T Consensus 131 ElkPtl~ELGI 141 (152)
T 2y69_E 131 ELRPTLNELGI 141 (152)
T ss_dssp HHHHHHHHHTC
T ss_pred HHhhHHHHhCC
Confidence 33455555543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.13 E-value=2.2 Score=40.57 Aligned_cols=161 Identities=12% Similarity=0.008 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHcccc--------------------------hHhhHHHHHHHHHcCCCHHHHHHH
Q 040965 101 VFMGTALIDLYGKVGCLERAIRVFKSMVIK--------------------------DVCTWNAMISSLASNSREKEALVM 154 (311)
Q Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~a~~~ 154 (311)
....-.+..+|...|++++|...|.+.... -..-|..++..+-+.+.++.+.+.
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333345778899999999999999887111 012366777888888999988888
Q ss_pred HHHHHHcCCCCc----HHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHH-------
Q 040965 155 FDEMKEKGLRAN----EITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAK------- 223 (311)
Q Consensus 155 ~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------- 223 (311)
-+...+...+-+ ...|..+..++...|++++|...+-.+... ..+ ......|+...|..|+.+.-.
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r--~~cLr~LV~~lce~~~~~~L~~lpf~gl 998 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLK--KSCLLDFVNQLTKQGKINQLLNYSMPTL 998 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSC--HHHHHHHHHHHHHHCCHHHHHHHTTTSC
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHH--HHHHHHHHHHHHhCCChhhhhCCCCccH
Confidence 777665422112 125788889999999999998888777543 333 335666777666666554433
Q ss_pred -----HHHHhC--C--CCCCcchHHHHHHH-HHhcCChhHH-HHHHHHHHhc
Q 040965 224 -----EFMRSM--P--FEPDASVLGALLGA-CKIHGAVDLC-HEVGRRLLEL 264 (311)
Q Consensus 224 -----~~~~~~--~--~~p~~~~~~~l~~~-~~~~g~~~~a-~~~~~~~~~~ 264 (311)
+++..- . ...+...|..++.+ +..+|++..| ..+|+.+.++
T Consensus 999 ~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 999 RQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 333221 0 11122334444444 5566666544 5567776653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.01 E-value=3.2 Score=34.01 Aligned_cols=166 Identities=10% Similarity=-0.033 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCc---hHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCC--c--
Q 040965 27 VSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPN---EATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIV--L-- 99 (311)
Q Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~-- 99 (311)
.+...|...|.+.|+.++..+++.....--. .-|- ......++..+.... +..+.-.++..+..+..-. .
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~kak~~k~v~~l~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~r~f 96 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLS-SISKAKAAKLVRSLVDMFLDMD--AGTGIEVQLCKDCIEWAKQEKRTF 96 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGG-GSCHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhchHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788999999999999999888754211 1222 233445666554433 2244444444444332100 0
Q ss_pred -hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCcH
Q 040965 100 -SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK--GLRANE 167 (311)
Q Consensus 100 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~ 167 (311)
...+-..++..|...|++.+|.+++.++... -...+..-+..|...+++.++...+...... .+.+++
T Consensus 97 lr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 97 LRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCH
Confidence 1112236789999999999999988887321 2345667778889999999999999887543 232333
Q ss_pred HHHHHH----HHHHH-ccccHHHHHHHHHHhhc
Q 040965 168 ITFVAV----LTACA-RAQLVELGLELFHSMLG 195 (311)
Q Consensus 168 ~~~~~l----~~~~~-~~~~~~~a~~~~~~~~~ 195 (311)
.....+ .-.+. ..+++..|...|-+..+
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 322211 22356 78899999888877654
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.93 E-value=1.1 Score=28.33 Aligned_cols=88 Identities=8% Similarity=-0.040 Sum_probs=63.2
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+....||...|.+|... +.|..+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3447788888888777664 222223345567788999999999999999999998776554 678888888888888
Q ss_pred HHcCCCCcHHHHH
Q 040965 159 KEKGLRANEITFV 171 (311)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (311)
...| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7776 44444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.77 E-value=0.44 Score=32.06 Aligned_cols=72 Identities=10% Similarity=-0.042 Sum_probs=47.0
Q ss_pred ccchhhHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 200 VPIMEHYGCVVDLLGRAGL---LSEAKEFMRSM-PFEPD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 200 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
.|+..+--.+..++.+..+ ..+++.+++++ ...|. ...+-.|.-++.+.|++++|.+..+.+++..|++..+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4454454445556665543 44677777777 32342 2344455567888899999999999888888887644
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=92.68 E-value=1.2 Score=28.19 Aligned_cols=88 Identities=9% Similarity=0.014 Sum_probs=61.4
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
....++|..+-+.+...+. ...+--+-+..+...|++++|..+.+....||...|.+|... +.|..+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 3447788888887777664 222223335567788999999999999999999988776554 567778888888777
Q ss_pred HHcCCCCcHHHHH
Q 040965 159 KEKGLRANEITFV 171 (311)
Q Consensus 159 ~~~~~~~~~~~~~ 171 (311)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 44444443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.67 E-value=0.94 Score=31.82 Aligned_cols=115 Identities=12% Similarity=-0.070 Sum_probs=63.8
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCccch-------hhHHHHHHHHHhcCCHHHHHHHHHhC----CCCC-Ccch
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIM-------EHYGCVVDLLGRAGLLSEAKEFMRSM----PFEP-DASV 237 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~ 237 (311)
+..-+..+...+.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++. ..-+ +..+
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444566777788888887777755432233331 24556667778888888888877774 1111 1111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHH
Q 040965 238 LGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMV 296 (311)
Q Consensus 238 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 296 (311)
...+. . ...... -. ..+.+...-..+..+|.+.|++++|+.+++.+.
T Consensus 103 ~~~~~-~---~ss~p~-------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 103 RPSTG-N---SASTPQ-------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred ccccc-c---cCCCcc-------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 11110 0 000000 00 012344566779999999999999999987653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.64 E-value=1.2 Score=28.25 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=34.8
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHH
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALL 242 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~ 242 (311)
+.-+..+-++.+... .+.|++....+.+.+|.+.+++..|.++|+.+ +..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 444555555555544 56666666666667777777777777776666 2223333454444
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=92.06 E-value=3.2 Score=31.79 Aligned_cols=119 Identities=12% Similarity=0.129 Sum_probs=76.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc----hhhHHHHHHHHHh
Q 040965 140 SSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI----MEHYGCVVDLLGR 215 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~ 215 (311)
..+.+.|+.++|++....-++.. +.|...-..++..+|-.|++++|.+-++...+ ..|+ ...|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHH---
Confidence 45678899999998888877763 44777888888889999999999988888764 3444 2334444432
Q ss_pred cCCHHHHH-HHHHhC---CC-CCCcchHHHHHHHH--HhcCChhHHHHHHHHHHhcCCCch
Q 040965 216 AGLLSEAK-EFMRSM---PF-EPDASVLGALLGAC--KIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 216 ~g~~~~A~-~~~~~~---~~-~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
+... ++|.-- ++ .....-...++.+. ...|+.++|..+-.++.+..|..+
T Consensus 78 ----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 ----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp ----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred ----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 2222 222211 11 11223344555553 457899999999998887766544
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=91.33 E-value=1 Score=28.47 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=59.1
Q ss_pred CChHHHHHHHHHhc-cccHHHHHHHH--HHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH
Q 040965 9 GDMDSAILLFENML-KRDVVSWTSII--NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85 (311)
Q Consensus 9 g~~~~A~~~~~~~~-~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a 85 (311)
.+.++|..+-+.+. .++ .-..+|| ..+...|++++|..+.+.. ..||...|..+-.. + .|..+++
T Consensus 21 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce~--r---lGl~s~l 88 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKL------AYPDLEPWLALCEY--R---LGLGSAL 88 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTS------CCGGGHHHHHHHHH--H---HTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC------CCchHHHHHHHHHH--h---cccHHHH
Confidence 45677877777763 334 4444455 4467889999999888776 68999988887763 3 4447888
Q ss_pred HHHHHHHhhccCCchHHHHH
Q 040965 86 KQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ 105 (311)
...+..+...| .|....|.
T Consensus 89 e~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 89 ESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHH
Confidence 88888888888 55555554
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=90.76 E-value=2.7 Score=28.36 Aligned_cols=46 Identities=11% Similarity=0.096 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 183 VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 183 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
..+..+-++.+... ++.|++....+-+.+|.+.+++..|.++|+-+
T Consensus 69 ~wElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~v 114 (152)
T 2y69_E 69 AWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVV 114 (152)
T ss_dssp HHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33444444444433 55566666666666666666666666666655
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.44 E-value=2.8 Score=28.17 Aligned_cols=72 Identities=13% Similarity=0.060 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHHHccc---cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc
Q 040965 164 RANEITFVAVLTACARAQ---LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS 236 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 236 (311)
.|+..+-..+..++.++. +..+++.+++.+.+. +..-.....-.|.-++.+.|++++|.++.+.+ .+.|+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 344444444444444443 334566666666543 21112233444555666666666666666666 5555543
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.29 E-value=4 Score=29.70 Aligned_cols=50 Identities=6% Similarity=-0.138 Sum_probs=30.6
Q ss_pred cCCHHHHHHHHHhC---CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 216 AGLLSEAKEFMRSM---PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 216 ~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
.+....+.++|..| ++-. -+.-|......+...|++++|..+|+..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 34355666666666 3322 33445666666677777777777777777644
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.80 E-value=0.92 Score=28.62 Aligned_cols=84 Identities=10% Similarity=-0.041 Sum_probs=59.2
Q ss_pred CChHHHHHHHHHhc-cccHHHHHHHH--HHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhH
Q 040965 9 GDMDSAILLFENML-KRDVVSWTSII--NGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLG 85 (311)
Q Consensus 9 g~~~~A~~~~~~~~-~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a 85 (311)
.+.++|..+-+.+. .++ .-..+|| ..+...|++++|..+.+.. ..||...|..+-.. + .|..+++
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~------c~pdlepw~ALce~--r---lGl~s~l 87 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGN------PWPALEPWFALCEW--H---LGLGAAL 87 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTC------CCGGGHHHHHHHHH--H---TTCHHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC------CCchHHHHHHHHHH--h---cccHHHH
Confidence 45677877777763 334 4444455 4567889999998887766 68999998887763 3 4448888
Q ss_pred HHHHHHHhhccCCchHHHHH
Q 040965 86 KQVHGYILRNEIVLSVFMGT 105 (311)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~ 105 (311)
...+..+...| .|....|.
T Consensus 88 e~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 88 DRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHHhCC-CHHHHHHH
Confidence 88888888888 55555554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.40 E-value=5.5 Score=33.10 Aligned_cols=97 Identities=7% Similarity=-0.098 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhc---cCCchHH--
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRN---EIVLSVF-- 102 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~-- 102 (311)
++..+...|.+.|++++|.+.|.++...-.+..--...+-.++..+.. .+++..+...+.++... +..|+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~---~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF---YNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 334455556666666666666666554321011122333334433222 33355555555554332 2122211
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
....-+..+...+++..|-..|-+.
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHH
Confidence 1111122234456666666665554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.93 E-value=7.3 Score=30.73 Aligned_cols=189 Identities=11% Similarity=0.014 Sum_probs=106.3
Q ss_pred chhHHHHHHHHhhccCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHH----HH
Q 040965 82 LYLGKQVHGYILRNEIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVM----FD 156 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~ 156 (311)
+++.+.-++.-++.|--- -...|.++..-|.+.+++++|++++..- ...+.+.|+...|-++ ++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llve 81 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLE 81 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHH
Confidence 344444444444443111 2345667777788888888888876533 3345566777666664 45
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHccccHH-HHHHHHHHhhcc---CC--CccchhhHHHHHHHHHhcCCHHHHHHHHHhCC
Q 040965 157 EMKEKGLRANEITFVAVLTACARAQLVE-LGLELFHSMLGK---FE--VVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMP 230 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 230 (311)
...+.+++++......++..+.....-+ .=.++++++++- .+ ..-++.....+...|.+.|++.+|...|- .+
T Consensus 82 v~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i-~~ 160 (312)
T 2wpv_A 82 VYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM-LG 160 (312)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH-TS
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH-hC
Confidence 5556788888888888887765532111 112333333321 01 12355677788888899999999888775 32
Q ss_pred CCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhcCCCchhHH-HHHHHHHhccchhHHHHHHHHHHHH
Q 040965 231 FEPDASVLGALLGACKIH---GAVDLCHEVGRRLLELQPKHCGRY-VVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 231 ~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
..-+...+..++.-+... |. |.....| ...+--|...|+...|..+++...+
T Consensus 161 ~~~s~~~~a~~l~~w~~~~~~~~---------------~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 161 THDSMIKYVDLLWDWLCQVDDIE---------------DSTVAEFFSRLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCC---------------HHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhcCCCC---------------cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 111334444444333332 22 2222222 2333446677788888888877653
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.72 E-value=1.2 Score=34.02 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCch
Q 040965 211 DLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHC 269 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 269 (311)
....+.|++++|++....- +..| |...=..|+..++-.|+++.|.+-++...+++|...
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3455778888888776665 4455 444445667778888888888888888888888743
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.37 E-value=2.9 Score=34.78 Aligned_cols=95 Identities=9% Similarity=-0.115 Sum_probs=56.3
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccC-CCccchhhHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCcchHHHH--
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKF-EVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PFEPDASVLGAL-- 241 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l-- 241 (311)
+...+...|.+.|+++.|.+.+.++.... +..--...+-.++..+...+++..+...++++ ...++...-+.+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56667777778888888888887776542 11122345666677777778888877777766 112222211111
Q ss_pred --HHHHHhcCChhHHHHHHHHHHh
Q 040965 242 --LGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 242 --~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
...+...+++..|...|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 1113356677777776666654
|
| >2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A | Back alignment and structure |
|---|
Probab=88.07 E-value=4.4 Score=27.16 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=46.9
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCCcHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNS--REKEALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~ 169 (311)
..++.-|...|+.++|...++++..| ...+...+..++-+.+ ..+.+..++..+.+.|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~ 80 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 56788899999999999999999766 3344555556666653 24677888888887776654443
|
| >2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A | Back alignment and structure |
|---|
Probab=87.24 E-value=5.7 Score=27.52 Aligned_cols=66 Identities=15% Similarity=0.143 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCC--CHHHHHHHHHHHHHcCCCCcHHH
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNS--REKEALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~ 169 (311)
...++.-|...|+.++|...++++..| ...+...+..++-+.+ ..+.+..++..+...|+-+....
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~ 82 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 82 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHH
Confidence 356788899999999999999999766 3344555566666543 35667788888887776654443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=86.26 E-value=6.1 Score=26.94 Aligned_cols=71 Identities=13% Similarity=0.060 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHHHHHcccc---HHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCc
Q 040965 164 RANEITFVAVLTACARAQL---VELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDA 235 (311)
Q Consensus 164 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~ 235 (311)
.|+..+-..+..++.++.+ ..+++.+++.+.+. +..-.....-.|.-++.+.|++++|.++.+.+ ...|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 3444444444444444443 34555566655543 11112223334445566666666666666665 445544
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=85.18 E-value=7.6 Score=27.26 Aligned_cols=30 Identities=0% Similarity=-0.086 Sum_probs=17.8
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
..|......+-..|++.+|..+|+..++..
T Consensus 97 lfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 97 QFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344555555566666666666666666543
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=84.69 E-value=7.8 Score=26.78 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHh--cCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCCC
Q 040965 252 DLCHEVGRRLLE--LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIRK 302 (311)
Q Consensus 252 ~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 302 (311)
+....+|..|.. ++......|...+..+...|++++|.++|+.=++.+-.|
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 346677777764 445555567777777777777777777777766665554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=83.65 E-value=15 Score=29.25 Aligned_cols=130 Identities=8% Similarity=-0.033 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHH
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTAL 107 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 107 (311)
.|.++..-|.+.+++++|++++..-.. .++.. ...... .|.+.-+++-..+.+++++......+
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~-------------~ll~~-~Q~~sg--~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVSQ-------------TLLRS-GQGGSG--GDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHT-TCHHHH--HHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHH-------------HHHHC-CCcchH--HHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455666667777777777776544311 11110 000001 33344444555555666666666666
Q ss_pred HHHHhhcCCH--------HHHHHHHHHc---ccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 040965 108 IDLYGKVGCL--------ERAIRVFKSM---VIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTA 176 (311)
Q Consensus 108 ~~~~~~~g~~--------~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~ 176 (311)
+..+.....- ++|+..-.+. ..-|+.....+...|.+.+++.+|...|- .|-.++...|..++..
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~e 176 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYE 176 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHH
Confidence 6665554431 1222222211 11256667777788888888888777762 2334444555444433
Q ss_pred H
Q 040965 177 C 177 (311)
Q Consensus 177 ~ 177 (311)
+
T Consensus 177 w 177 (336)
T 3lpz_A 177 W 177 (336)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=82.82 E-value=9 Score=28.41 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=20.7
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
..|......+...|++.+|..+|+..++..
T Consensus 151 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 151 IFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 445666666677777777777777777644
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.12 E-value=23 Score=30.20 Aligned_cols=62 Identities=8% Similarity=-0.017 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHHHcccchH-------hhHH-HHHHHHHcCCCHHHHHHHHHHHHHc
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFKSMVIKDV-------CTWN-AMISSLASNSREKEALVMFDEMKEK 161 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~ 161 (311)
-..++|.+++.|...+.++.|..+..+..-|.. ..|. -+...+.-.+++.+|.+.+......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356778888888888888888888888755521 1221 2345566788888888888876654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.89 E-value=20 Score=29.38 Aligned_cols=283 Identities=12% Similarity=0.043 Sum_probs=152.4
Q ss_pred hhhhhhcCChHHHHHHHHHhcc--------ccHHHHHHHHHHHHhc-CCHhHHHHHHHHhhcCCCCCCCchHHH-HHHH-
Q 040965 2 IDGYVKNGDMDSAILLFENMLK--------RDVVSWTSIINGFVRN-GCFGEAICVFKNMMGNVNLVRPNEATY-VSVL- 70 (311)
Q Consensus 2 i~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~p~~~~~-~~ll- 70 (311)
...|.+.|+.++...++..... .....-..+++.+... +..+.-.++..+..+.. .-+..+| ..-+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a---~~~~r~flr~~l~ 102 (394)
T 3txn_A 26 GELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA---KQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH---HHTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4678899999999999988722 1445677888888764 33444445544444321 1111223 1111
Q ss_pred -HHhhhhhhcCcchhHHHHHHHHhhccCC-----chHHHHHHHHHHHhhcCCHHHHHHHHHHccc------chHhhH---
Q 040965 71 -SSCAGLVNEGGLYLGKQVHGYILRNEIV-----LSVFMGTALIDLYGKVGCLERAIRVFKSMVI------KDVCTW--- 135 (311)
Q Consensus 71 -~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~--- 135 (311)
....-+...|++.+|.+++..+.+.=-. .-..++..-+..|...+++.++...+.+... +++...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 2222333478899999998888764111 1245566677889999999999988876621 222221
Q ss_pred -HHHHHHHH-cCCCHHHHHHHHHHHHHc-C-C-CC---cHHHHHHHHHHHHccccHHHHHHHHH-HhhccCCCccchhhH
Q 040965 136 -NAMISSLA-SNSREKEALVMFDEMKEK-G-L-RA---NEITFVAVLTACARAQLVELGLELFH-SMLGKFEVVPIMEHY 206 (311)
Q Consensus 136 -~~l~~~~~-~~~~~~~a~~~~~~m~~~-~-~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~ 206 (311)
-.-.-.+. ..++|..|...|-+..+. . . .| +...|..+. +..... ..+...++. .....+ ..|....+
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl~~~-r~el~~~l~~~~~~~~-~~pei~~l 259 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIMLGQ-SDDVNQLVSGKLAITY-SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHTTC-GGGHHHHHHSHHHHTT-CSHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHHcCC-HHHHHHHhcccccccc-CCccHHHH
Confidence 12233456 789999999888776432 1 1 11 122343333 222222 222222221 211211 34666666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 207 GCVVDLLGRAGLLSEAKEFMRSMP--FEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 207 ~~l~~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
..++.+| ..+++.+..++++... +..|......+ ..+.+ .--...+.++ ..|-..-.+..+...+.- .
T Consensus 260 ~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~-~~L~~----~Ir~~~L~~i--~~pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 260 KSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHL-GTLYD----TMLEQNLCRI--IEPYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHH-HHHHH----HHHHHHHHHH--HTTCSEEEHHHHHHHHTC--C
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHH-HHHHH----HHHHHHHHHH--hHhhceeeHHHHHHHHCc--C
Confidence 6777765 6678887777777762 33343321111 11000 0001111111 234444456666666543 5
Q ss_pred hHHHHHHHHHHHHccC
Q 040965 285 WNRATDLRKAMVEAGI 300 (311)
Q Consensus 285 ~~~A~~~~~~m~~~~~ 300 (311)
.++++..+-+|+..|.
T Consensus 330 ~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 330 MPQVEKKLSQMILDKK 345 (394)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCC
Confidence 6788888888887664
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.32 E-value=18 Score=28.51 Aligned_cols=26 Identities=12% Similarity=0.056 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHhhcCCHHHHHHHHH
Q 040965 100 SVFMGTALIDLYGKVGCLERAIRVFK 125 (311)
Q Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (311)
++.....+...|.+.|++.+|+..|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 34455555666666666666665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 311 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.78 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.54 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.54 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.44 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.43 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.43 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.42 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.4 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.4 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.33 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.13 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.13 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.01 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.97 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.96 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.95 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.94 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.93 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.93 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.89 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.86 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.83 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.76 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.68 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.64 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.64 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.62 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.62 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.52 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.51 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.49 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.47 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.41 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.27 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.23 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.07 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.06 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.98 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.94 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.9 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.77 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.72 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 97.21 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.2 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.98 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.75 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.1 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.91 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.59 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 92.11 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.83 | |
| d2nsza1 | 129 | Programmed cell death 4, PDCD4 {Mouse (Mus musculu | 86.24 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.3e-22 Score=163.75 Aligned_cols=287 Identities=12% Similarity=0.090 Sum_probs=234.2
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhh
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVN 78 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~ 78 (311)
+.+.+.|++++|++.|+++.+ | ++.++..+..+|.+.|++++|+..|+++.+ ..|+. ..+..+..++..
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~p~~~~a~~~l~~~~~~--- 79 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK----QNPLLAEAYSNLGNVYKE--- 79 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHH---
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHhhh---
Confidence 457788999999999999843 3 677899999999999999999999999987 44554 455555544333
Q ss_pred cCcchhHHHHHHHHhhccCC------------------------------------------------------------
Q 040965 79 EGGLYLGKQVHGYILRNEIV------------------------------------------------------------ 98 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~------------------------------------------------------------ 98 (311)
.|++++|...+....+....
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 56688888877766553221
Q ss_pred -------chHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHH
Q 040965 99 -------LSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEI 168 (311)
Q Consensus 99 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 168 (311)
.+...+..+...+...|++++|...+++... .+..+|..+...+...|++++|...+++....+ +.+..
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 1234455667778888999999999987743 356788889999999999999999999988764 44677
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHH
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACK 246 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~ 246 (311)
.+..+...+.+.|++++|...|+++++. .+-+..++..+..++...|++++|.+.++.. ..+.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence 7888889999999999999999999864 2234568889999999999999999999988 33456677888888999
Q ss_pred hcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 247 IHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 247 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
..|++++|...++++++..|+++.++..++.+|.+.|++++|...|++..+..
T Consensus 317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 369 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 369 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999988754
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.6e-20 Score=153.60 Aligned_cols=271 Identities=11% Similarity=0.114 Sum_probs=223.9
Q ss_pred hhhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHH--------------
Q 040965 3 DGYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEAT-------------- 65 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~-------------- 65 (311)
..|.+.|++++|+..|+++.+ | +..+|..+..+|.+.|++++|++.+....+.. |....
T Consensus 41 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 116 (388)
T d1w3ba_ 41 SIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK----PDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccccccc----ccccccccccccccccccc
Confidence 467889999999999999843 3 57799999999999999999999999887643 21111
Q ss_pred -------------------------------------------------------HHHHHHHhhhhhhcCcchhHHHHHH
Q 040965 66 -------------------------------------------------------YVSVLSSCAGLVNEGGLYLGKQVHG 90 (311)
Q Consensus 66 -------------------------------------------------------~~~ll~~~~~~~~~~~~~~a~~~~~ 90 (311)
+..+. ......|++++|...++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~~~ 193 (388)
T d1w3ba_ 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG---CVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHH---HHHHTTTCHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhc---ccccccCcHHHHHHHHH
Confidence 00000 01122566888999998
Q ss_pred HHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcH
Q 040965 91 YILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANE 167 (311)
Q Consensus 91 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 167 (311)
+.++.. +.+...+..+...+...|++++|+..+++... .+...+..+...+.+.|++++|.+.|++..+.. +-+.
T Consensus 194 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~ 271 (388)
T d1w3ba_ 194 KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFP 271 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCH
T ss_pred HHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence 888764 33577888999999999999999999998743 366778889999999999999999999998863 3367
Q ss_pred HHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHH
Q 040965 168 ITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGAC 245 (311)
Q Consensus 168 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~ 245 (311)
.++..+...+...|++++|...++..... .+.+...+..+...+...|++++|.+.|++. ...|+ ..++..+...+
T Consensus 272 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 349 (388)
T d1w3ba_ 272 DAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 88899999999999999999999998864 4556678888999999999999999999997 66675 46678888899
Q ss_pred HhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 246 KIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 246 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
...|++++|...|+++++++|+++.+|..++.+|.+.|+
T Consensus 350 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=3.1e-17 Score=131.11 Aligned_cols=238 Identities=13% Similarity=0.007 Sum_probs=108.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHH
Q 040965 32 IINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDL 110 (311)
Q Consensus 32 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 110 (311)
....+.+.|++++|+..|+++++ ..|+. ..|..+..++. ..|++++|...+.+.++.. +-+...+..++.+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~----~~P~~~~a~~~lg~~~~---~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 96 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQ----QDPKHMEAWQYLGTTQA---ENEQELLAISALRRCLELK-PDNQTALMALAVS 96 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH----SCTTCHHHHHHHHHHHH---HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHH---HcCChHHHHHHHHhhhccc-ccccccccccccc
Confidence 44455666666666666666665 34443 33333333222 2444666666666665543 2234555556666
Q ss_pred HhhcCCHHHHHHHHHHcccchHh---hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHH
Q 040965 111 YGKVGCLERAIRVFKSMVIKDVC---TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 111 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
|...|++++|.+.++++...++. .+....... ...+.......+..+...+...+|.
T Consensus 97 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (323)
T d1fcha_ 97 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVK 156 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHH
Confidence 66666666666666554221100 000000000 0000000011111222334444455
Q ss_pred HHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 040965 188 ELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQ 265 (311)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 265 (311)
..+.++++.....++..++..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++.+
T Consensus 157 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 236 (323)
T d1fcha_ 157 ELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ 236 (323)
T ss_dssp HHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence 555444432112223334444555555555555555555554 2223 23344444455555555555555555555555
Q ss_pred CCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 266 PKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 266 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
|+++.++..++.+|.+.|++++|...|++.++
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.2e-16 Score=125.06 Aligned_cols=260 Identities=16% Similarity=0.094 Sum_probs=178.2
Q ss_pred hhhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch-HHHHHHHHHhhhhhhc
Q 040965 4 GYVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE-ATYVSVLSSCAGLVNE 79 (311)
Q Consensus 4 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~ 79 (311)
.+.+.|++++|+..|+++.+ | +..+|..+..++...|++++|...|++..+ +.|+. ..+..+..++. ..
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~----~~p~~~~~~~~la~~~~---~~ 100 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE----LKPDNQTALMALAVSFT---NE 100 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH---HT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc----ccccccccccccccccc---cc
Confidence 47789999999999999843 3 577999999999999999999999999988 55654 44444444333 36
Q ss_pred CcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 040965 80 GGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 80 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
|++++|.+.++......... .......... ... .+.......+..+...+.+.+|.+.+.+..
T Consensus 101 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~-~~~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYTPAY-AHLVTPAEEG-AGG---------------AGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp TCHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhhHHHhccch-HHHHHhhhhh-hhh---------------cccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 77999999999988754221 1110000000 000 000011111222334466777888888776
Q ss_pred HcCC-CCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cc
Q 040965 160 EKGL-RANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-AS 236 (311)
Q Consensus 160 ~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 236 (311)
+... .++...+..+...+...|++++|...+++.... .+-+...|..+..+|...|++++|.+.|++. ...|+ ..
T Consensus 164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 5432 235677788888888999999999999998754 2234567888889999999999999999887 44554 46
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh-----------HHHHHHHHHhccchhHHHH
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG-----------RYVVLSNIHAGLERWNRAT 289 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~ 289 (311)
++..+...|...|++++|...|+++++..|++.. .|..+..++...|+.+.+.
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7888888899999999999999999987777543 3444555555555555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=6.7e-12 Score=100.48 Aligned_cols=263 Identities=11% Similarity=-0.029 Sum_probs=172.9
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCch------HHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccC----
Q 040965 28 SWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNE------ATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEI---- 97 (311)
Q Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~---- 97 (311)
........+...|++++|++++++.++.. |+. ..+..+-.++ ...|++++|...+++..+...
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~----~~~~~~~~~~a~~~lg~~~---~~~g~~~~A~~~~~~a~~~~~~~~~ 86 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVL---HCKGELTRSLALMQQTEQMARQHDV 86 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHH---HHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cCCCcHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 34445566778888888888888887643 322 1222222222 236778888888887765321
Q ss_pred Cc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-----------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcC---
Q 040965 98 VL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK-----------DVCTWNAMISSLASNSREKEALVMFDEMKEKG--- 162 (311)
Q Consensus 98 ~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--- 162 (311)
.+ ....+..+...+...|++..+...+.+.... ....+..+...+...|+++.+...+.......
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~ 166 (366)
T d1hz4a_ 87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 166 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhh
Confidence 11 2345566777788888888888888765211 22355666778888899999998888876542
Q ss_pred -CCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccC---CCcc--chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-
Q 040965 163 -LRANEITFVAVLTACARAQLVELGLELFHSMLGKF---EVVP--IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD- 234 (311)
Q Consensus 163 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~- 234 (311)
.......+......+...++...+...+....... +..+ ....+..+...+...|++++|.+.+++. ...|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 246 (366)
T d1hz4a_ 167 QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN 246 (366)
T ss_dssp CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT
T ss_pred hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc
Confidence 22234555666667777888888887776654321 1111 1234555667778888999999888877 22222
Q ss_pred ----cchHHHHHHHHHhcCChhHHHHHHHHHHh------cCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040965 235 ----ASVLGALLGACKIHGAVDLCHEVGRRLLE------LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE 297 (311)
Q Consensus 235 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 297 (311)
...+..+...+...|++++|...++++.. ..|....++..++.+|.+.|++++|.+.+++..+
T Consensus 247 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 247 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12344566778888999999998888874 2344555778888889999999999988887654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=4.1e-12 Score=101.77 Aligned_cols=289 Identities=10% Similarity=-0.018 Sum_probs=198.2
Q ss_pred hhhhhcCChHHHHHHHHHhcc--cc------HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhh
Q 040965 3 DGYVKNGDMDSAILLFENMLK--RD------VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCA 74 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~ 74 (311)
..+...|++++|+.++++... |+ ..+++.+..++...|++++|+..|++..+....................
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 456789999999999998732 21 3477888999999999999999999987632111111112222222222
Q ss_pred hhhhcCcchhHHHHHHHHhhcc----C--Cc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc--------hHhhHHHHH
Q 040965 75 GLVNEGGLYLGKQVHGYILRNE----I--VL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK--------DVCTWNAMI 139 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~ 139 (311)
.....|++..+...+....... . .+ ....+..+...+...|+++.+...+...... ...++....
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 3334677889988887765421 1 11 2345667788899999999999999877321 344566667
Q ss_pred HHHHcCCCHHHHHHHHHHHHHc----CCCC--cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCc--cchhhHHHHHH
Q 040965 140 SSLASNSREKEALVMFDEMKEK----GLRA--NEITFVAVLTACARAQLVELGLELFHSMLGKFEVV--PIMEHYGCVVD 211 (311)
Q Consensus 140 ~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~ 211 (311)
..+...+++..+...+.+.... +..+ ....+..+...+...|+++.|...+.......... .....+..+..
T Consensus 180 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 180 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 7788889999999988876542 1111 12345666677889999999999999987642211 12344566788
Q ss_pred HHHhcCCHHHHHHHHHhC-------CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc---------hhHHHH
Q 040965 212 LLGRAGLLSEAKEFMRSM-------PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH---------CGRYVV 274 (311)
Q Consensus 212 ~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~ 274 (311)
++...|++++|.+.+++. +..|+ ...+..+...|...|++++|...+++++++.+.. ......
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~ 339 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence 999999999999998876 33343 3456777788999999999999999998753321 123445
Q ss_pred HHHHHhccchhHHHHHH
Q 040965 275 LSNIHAGLERWNRATDL 291 (311)
Q Consensus 275 l~~~~~~~g~~~~A~~~ 291 (311)
++..+...++.+++.+-
T Consensus 340 ~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 340 QLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHTTCSCHHHHH
T ss_pred HHHHHHhcCCChHHHHH
Confidence 55666666776666543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=4.7e-13 Score=106.99 Aligned_cols=247 Identities=8% Similarity=-0.104 Sum_probs=131.4
Q ss_pred CCHhHHHHHHHHhhcCCCCCCCchHH-HHHHHHHhhh-------hhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040965 40 GCFGEAICVFKNMMGNVNLVRPNEAT-YVSVLSSCAG-------LVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLY 111 (311)
Q Consensus 40 g~~~~A~~~~~~~~~~~~~~~p~~~~-~~~ll~~~~~-------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (311)
+..++|++++++.++ ..|+..+ |+..-..+.. ....|++++++..++...+.. +.+...|..+..++
T Consensus 43 ~~~~~al~~~~~~l~----~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 43 ELDESVLELTSQILG----ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL 117 (334)
T ss_dssp CCSHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHH----HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHH
Confidence 334677777777766 4455543 2211111111 111344667777777766654 33455555555555
Q ss_pred hhcC--CHHHHHHHHHHcccc---hHhhHH-HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHH
Q 040965 112 GKVG--CLERAIRVFKSMVIK---DVCTWN-AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVEL 185 (311)
Q Consensus 112 ~~~g--~~~~A~~~~~~~~~~---~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 185 (311)
...+ ++++|+..+.++... +...+. .....+...+.+++|+..++.+.+.+ +-+...|..+...+...|++++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 4444 366777766666332 233332 33355556677777777777666553 2255666666666666676666
Q ss_pred HHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040965 186 GLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM--PFEPDASVLGALLGACKIHGAVDLCHEVGRRLLE 263 (311)
Q Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 263 (311)
|...+....+. .|.. ..+...+...+..+++...+... ..+++...+..+...+...|+.++|...+.+...
T Consensus 197 A~~~~~~~~~~---~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 197 SGPQGRLPENV---LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp SSSCCSSCHHH---HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhHHh---HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 65444443321 2211 11222333445555555555444 2223334444445555556666666666666666
Q ss_pred cCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 264 LQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 264 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
.+|.+..++..++.++.+.|++++|.+.+++..+.
T Consensus 271 ~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 271 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=1.9e-12 Score=99.37 Aligned_cols=194 Identities=11% Similarity=-0.056 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 040965 102 FMGTALIDLYGKVGCLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACA 178 (311)
Q Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~ 178 (311)
.++..+..+|.+.|++++|+..|++... .++.+|+.+..+|.+.|++++|++.|+++.+.. +-+..++..+..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 4555566666666666666666666522 245566666666666666666666666666542 123445556666666
Q ss_pred ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcchHHHHHHHHHh----cCChhH
Q 040965 179 RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDASVLGALLGACKI----HGAVDL 253 (311)
Q Consensus 179 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~g~~~~ 253 (311)
..|+++.|...|+..++. .+.+......+..++.+.+..+.+..+.... ...++...+. ++..+.. .+..+.
T Consensus 117 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHHH
Confidence 666666666666666543 1112222222333334444443333333332 1112211111 1111111 111222
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHcc
Q 040965 254 CHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAG 299 (311)
Q Consensus 254 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 299 (311)
+...+.......|....+|..++..|...|++++|...|++....+
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 2333333333444444456666666666666666666666665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=3.7e-13 Score=107.65 Aligned_cols=260 Identities=9% Similarity=-0.022 Sum_probs=191.1
Q ss_pred CChHHHHHHHHHhc--cc-cHHHHHHHHHHH----------HhcCCHhHHHHHHHHhhcCCCCCCCchH-HHHHHHHHhh
Q 040965 9 GDMDSAILLFENML--KR-DVVSWTSIINGF----------VRNGCFGEAICVFKNMMGNVNLVRPNEA-TYVSVLSSCA 74 (311)
Q Consensus 9 g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~----------~~~g~~~~A~~~~~~~~~~~~~~~p~~~-~~~~ll~~~~ 74 (311)
+..++|+.+++++. .| +...|+..-..+ ...|++++|+.+++...+ ..|+.. .|..+..++.
T Consensus 43 ~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~----~~pk~~~~~~~~~~~~~ 118 (334)
T d1dcea1 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR----VNPKSYGTWHHRCWLLS 118 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH----HCTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH----hCCCcHHHHHHhhHHHH
Confidence 33489999999984 44 445665444333 334558899999999998 556544 4555544444
Q ss_pred hhhhcCcchhHHHHHHHHhhccCCchHHH-HHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHH
Q 040965 75 GLVNEGGLYLGKQVHGYILRNEIVLSVFM-GTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKE 150 (311)
Q Consensus 75 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~ 150 (311)
..+ .++++++...++.+.+..+. +... +......+...+++++|+..+++++.. +..+|+.+...+.+.|++++
T Consensus 119 ~~~-~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLP-EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCS-SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred Hhc-cccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHH
Confidence 444 66689999999999987533 4444 345567888899999999999998544 67788889999999999999
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-
Q 040965 151 ALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM- 229 (311)
Q Consensus 151 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~- 229 (311)
|...++...+. .|+. ..+...+...+..+.+...+...... .+++...+..++..+...|++++|.+.+.+.
T Consensus 197 A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 197 SGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp SSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88877765543 2221 22333455667778888888887754 2444556777788888999999999999887
Q ss_pred CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc
Q 040965 230 PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG 281 (311)
Q Consensus 230 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 281 (311)
...| +...+..+...+...|++++|...++++++.+|.....|..|...+.-
T Consensus 270 ~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 270 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp TTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 5455 346677777889999999999999999999999988788888776663
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=3.3e-11 Score=95.13 Aligned_cols=225 Identities=9% Similarity=0.039 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHH-HHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHH
Q 040965 26 VVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATY-VSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMG 104 (311)
Q Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 104 (311)
..+|+.+...+.+.+.+++|+++++++++ +.|+..+. +..-.++..++ +++++|...++..++.. +-+..+|
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~----lnP~~~~a~~~r~~~l~~l~--~~~~eal~~~~~al~~~-p~~~~a~ 115 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIE----LNAANYTVWHFRRVLLKSLQ--KDLHEEMNYITAIIEEQ-PKNYQVW 115 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHH----HCTTCHHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH----HCCCChHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHHH-HhhhhHH
Confidence 45777788888899999999999999998 66776544 44433333322 23889999999988875 4467888
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccc
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQ 181 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~ 181 (311)
..+..++.+.|++++|++.++++.+. +..+|..+...+...|++++|++.++++.+.+ +-+...|+.+...+.+.+
T Consensus 116 ~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~ 194 (315)
T d2h6fa1 116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTT 194 (315)
T ss_dssp HHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHcc
Confidence 88899999999999999999988443 57788888889999999999999999988874 235667776665555444
Q ss_pred ------cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CcchHHHHHHHHHh--cC
Q 040965 182 ------LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP---DASVLGALLGACKI--HG 249 (311)
Q Consensus 182 ------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~--~g 249 (311)
..++|+..+.++++. .+.+...|..+...+... ..+++.+.++.. ...| +...+..++..|.. .+
T Consensus 195 ~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~ 271 (315)
T d2h6fa1 195 GYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLEN 271 (315)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHT
T ss_pred ccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhc
Confidence 367888888887753 222455666665554433 345566655554 2233 33444555555533 24
Q ss_pred ChhHHHHHHHHH
Q 040965 250 AVDLCHEVGRRL 261 (311)
Q Consensus 250 ~~~~a~~~~~~~ 261 (311)
..+.+...++++
T Consensus 272 ~~~~~~~~~~ka 283 (315)
T d2h6fa1 272 QCDNKEDILNKA 283 (315)
T ss_dssp TCSSHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 444444444433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=5.8e-12 Score=96.63 Aligned_cols=189 Identities=10% Similarity=-0.099 Sum_probs=113.5
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMF 155 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 155 (311)
.|++++|...|++.++.. +.++.+|+.+..+|.+.|++++|+..|+++..- +..++..+..++...|++++|.+.|
T Consensus 50 ~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 128 (259)
T d1xnfa_ 50 LGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDL 128 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH
Confidence 555666666666666553 235667777888888888888888888877332 4567777888888888888888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC----HHHHHHHHHhC-C
Q 040965 156 DEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL----LSEAKEFMRSM-P 230 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~~-~ 230 (311)
++..+.. +.+......+..++.+.+..+.+..+....... .++...++ ++..+..... .+.+...+... .
T Consensus 129 ~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (259)
T d1xnfa_ 129 LAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS 203 (259)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred HHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8887763 224444444444455555555555554444432 22221222 2222222212 22222222221 1
Q ss_pred CCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHH
Q 040965 231 FEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYV 273 (311)
Q Consensus 231 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 273 (311)
..|+ ..++..+...+...|++++|...|++++..+|++...|.
T Consensus 204 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 204 LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 1222 245666778889999999999999999999998753443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.40 E-value=8e-11 Score=92.67 Aligned_cols=181 Identities=9% Similarity=0.009 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHccc----chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHH
Q 040965 116 CLERAIRVFKSMVI----KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFH 191 (311)
Q Consensus 116 ~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 191 (311)
..++|..+|++... .+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34666667766532 24456666777777778888888888777765322234567777777777788888888887
Q ss_pred HhhccCCCccchhhHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 192 SMLGKFEVVPIMEHYGCVVDL-LGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 192 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
++++.. +.+...|...+.. +...|+.+.|..+|+.+ ...| +...|...+..+...|+++.|..+|+++++..|.+
T Consensus 159 ~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 777542 2233334333332 23457777788777777 2223 44667777777777888888888888877755433
Q ss_pred ----hhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 269 ----CGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 269 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
...|...+......|+.+.+.++++++.+.
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 235666677667778888888887777654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=2.5e-11 Score=95.78 Aligned_cols=214 Identities=12% Similarity=0.092 Sum_probs=150.9
Q ss_pred hcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcC-CHHHHHHHHHHccc---chHhhHHHHHHHHHcCCCHHHHHH
Q 040965 78 NEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVG-CLERAIRVFKSMVI---KDVCTWNAMISSLASNSREKEALV 153 (311)
Q Consensus 78 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~ 153 (311)
+.+..++|+++++++++.. |-+...|+....++...| ++++|+..++++.. .+..+|..+...+.+.|++++|++
T Consensus 55 ~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~ 133 (315)
T d2h6fa1 55 RDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 133 (315)
T ss_dssp HTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred hCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHH
Confidence 3566888888888888875 345677788888877766 48888888887733 356788888888888888888888
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHHHHhcCC------HHHHHHHH
Q 040965 154 MFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDLLGRAGL------LSEAKEFM 226 (311)
Q Consensus 154 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~------~~~A~~~~ 226 (311)
.++++.+.. +-+...|..+...+...|++++|+..++++++. .| +...|+.+...+.+.+. +++|.+.+
T Consensus 134 ~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~ 209 (315)
T d2h6fa1 134 FIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 209 (315)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHH
T ss_pred HHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccchhhhhHHhHHHH
Confidence 888888763 336788888888888888888888888888853 33 45567766666665554 56777777
Q ss_pred HhC-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--hhHHHHHHHHHhcc--chhHHHHHHHHHHHH
Q 040965 227 RSM-PFEPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH--CGRYVVLSNIHAGL--ERWNRATDLRKAMVE 297 (311)
Q Consensus 227 ~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~ 297 (311)
.+. ...|+ ...|..+...+ .....+++...++.+.+..|+. +..+..++..|... +..+.+...+++..+
T Consensus 210 ~~al~~~P~~~~~~~~l~~ll-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 210 LEMIKLVPHNESAWNYLKGIL-QDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHSTTCHHHHHHHHHHH-TTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHhCCCchHHHHHHHHHH-HhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 776 44554 45555554443 4445677888888888777653 33455666666543 455667776666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.33 E-value=2.9e-10 Score=89.36 Aligned_cols=185 Identities=11% Similarity=0.098 Sum_probs=146.1
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---h-HhhHHHHHHHHHcCCCHHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK---D-VCTWNAMISSLASNSREKEALVMFD 156 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~ 156 (311)
..+++..++++.++...+.+...|...+..+.+.|+++.|..+|+++... + ...|...+....+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 36788899999887655556778888899999999999999999988432 2 3468888999999999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHH-HHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 040965 157 EMKEKGLRANEITFVAVLTA-CARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM----PF 231 (311)
Q Consensus 157 ~m~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~ 231 (311)
++.+.+. .+...|...... +...|+.+.|..+|+.+++. .+.+...|...++.+.+.|+++.|..+|++. +.
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 9887642 244444444332 44568999999999999875 3445668899999999999999999999987 23
Q ss_pred CCC--cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 232 EPD--ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 232 ~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
.|+ ...|...+..-...|+.+.+..+++++.+..|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 333 2467777877788999999999999999877764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.13 E-value=1.2e-09 Score=85.01 Aligned_cols=189 Identities=9% Similarity=-0.059 Sum_probs=114.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHc----CCC-CcHHHHHH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLASNSREKEALVMFDEMKEK----GLR-ANEITFVA 172 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ 172 (311)
..+.|...|++++|.+.|.++..- -..+|..+..+|.+.|++++|.+.+++..+. |.. ....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 456677788888888888776221 2356777788888888888888888875532 111 11344555
Q ss_pred HHHHHH-ccccHHHHHHHHHHhhccC---CCcc-chhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc--------hH
Q 040965 173 VLTACA-RAQLVELGLELFHSMLGKF---EVVP-IMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS--------VL 238 (311)
Q Consensus 173 l~~~~~-~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--------~~ 238 (311)
+...|. ..|+++.|...+++..+.. +..+ ...++..++..|...|++++|.+.|+++ ...|+.. .+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555553 4588888888887765321 1111 1345677778888888888888888776 2222211 12
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCch-----hHHHHHHHHHhc--cchhHHHHHHHHHH
Q 040965 239 GALLGACKIHGAVDLCHEVGRRLLELQPKHC-----GRYVVLSNIHAG--LERWNRATDLRKAM 295 (311)
Q Consensus 239 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~l~~~~~~--~g~~~~A~~~~~~m 295 (311)
...+..+...|+++.|...++++.+.+|... .....++.++.. .+.+++|...|+++
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 2333455677888888888888887766422 233455555554 34567777766543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.3e-09 Score=77.78 Aligned_cols=87 Identities=9% Similarity=-0.015 Sum_probs=72.1
Q ss_pred HHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHH
Q 040965 108 IDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGL 187 (311)
Q Consensus 108 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 187 (311)
...+...|++++|++.|.++..+++.+|..+..+|...|++++|++.|++..+.+ +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5566788889999999988888888888888888899999999999999888764 336778888888888899999998
Q ss_pred HHHHHhhc
Q 040965 188 ELFHSMLG 195 (311)
Q Consensus 188 ~~~~~~~~ 195 (311)
..|++.+.
T Consensus 91 ~~~~kAl~ 98 (192)
T d1hh8a_ 91 KDLKEALI 98 (192)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.01 E-value=1.1e-09 Score=80.30 Aligned_cols=118 Identities=6% Similarity=-0.149 Sum_probs=91.9
Q ss_pred CcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHH
Q 040965 165 ANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALL 242 (311)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 242 (311)
|+...+......+.+.|++++|+..|++++.. .+.+...|..+..+|.+.|++++|...|++. .+.|+ ..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 67777778888899999999999999988864 2345677888889999999999999999888 66674 56788888
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccch
Q 040965 243 GACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLER 284 (311)
Q Consensus 243 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 284 (311)
.+|...|++++|...|++++++.|++...+...+..+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~ 121 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 121 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 889999999999999999988877655445444544444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=6.4e-09 Score=68.86 Aligned_cols=103 Identities=9% Similarity=-0.063 Sum_probs=65.6
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCCh
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALLGACKIHGAV 251 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 251 (311)
...+...|++++|+..|++.++. .+.+...|..+..+|...|++++|++.+++. .+. .+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 44566667777777777776643 2234456666667777777777777777666 222 3445666666677777777
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHH
Q 040965 252 DLCHEVGRRLLELQPKHCGRYVVLSNI 278 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 278 (311)
++|...|+++++..|+++.++..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777776555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.96 E-value=2e-09 Score=78.78 Aligned_cols=96 Identities=9% Similarity=-0.041 Sum_probs=84.4
Q ss_pred chHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHH
Q 040965 130 KDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGC 208 (311)
Q Consensus 130 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 208 (311)
|+...+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|+++.|+..|+++++ +.| +..+|..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~ 77 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFF 77 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHH
Confidence 556667778899999999999999999988874 44788899999999999999999999999985 455 4678899
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 040965 209 VVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 209 l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+..+|...|++++|...|++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999987
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=1.6e-07 Score=72.60 Aligned_cols=188 Identities=9% Similarity=-0.059 Sum_probs=114.8
Q ss_pred cCcchhHHHHHHHHhhc----cCCc-hHHHHHHHHHHHhhcCCHHHHHHHHHHcccc---------hHhhHHHHHHHHH-
Q 040965 79 EGGLYLGKQVHGYILRN----EIVL-SVFMGTALIDLYGKVGCLERAIRVFKSMVIK---------DVCTWNAMISSLA- 143 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~l~~~~~- 143 (311)
.+++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|.+.+++...- ...++..+...|.
T Consensus 50 ~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 129 (290)
T d1qqea_ 50 RKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN 129 (290)
T ss_dssp TTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhh
Confidence 33355555555555442 1111 2456777788888888888888888766221 2345556666664
Q ss_pred cCCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc----ch-hhHHHHHHHH
Q 040965 144 SNSREKEALVMFDEMKEK----GLRA-NEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP----IM-EHYGCVVDLL 213 (311)
Q Consensus 144 ~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~-~~~~~l~~~~ 213 (311)
..|++++|++.+++..+. +.++ -..++..+...+...|++++|...|+++.......+ .. ..+...+..+
T Consensus 130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (290)
T d1qqea_ 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (290)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHH
Confidence 468888888888876532 2222 134677788888899999999999988775421111 11 1234555667
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC---c---chHHHHHHHHHh--cCChhHHHHHHHHHHhcCC
Q 040965 214 GRAGLLSEAKEFMRSM-PFEPD---A---SVLGALLGACKI--HGAVDLCHEVGRRLLELQP 266 (311)
Q Consensus 214 ~~~g~~~~A~~~~~~~-~~~p~---~---~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~ 266 (311)
...|+++.|.+.+++. .+.|+ . .....++.++.. .+.+++|...|+++.+++|
T Consensus 210 l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 7888999999888887 44442 1 233445555543 2346777777776665544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.94 E-value=4.2e-09 Score=69.14 Aligned_cols=92 Identities=16% Similarity=-0.023 Sum_probs=82.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
....+...+.+.|++++|...|++. ...| +...|..+..++.+.|++++|+..++++++.+|++..++..++.+|...
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence 3445677888999999999999998 4456 5678888889999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHH
Q 040965 283 ERWNRATDLRKAMV 296 (311)
Q Consensus 283 g~~~~A~~~~~~m~ 296 (311)
|++++|.+.+++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=5.3e-09 Score=69.24 Aligned_cols=94 Identities=14% Similarity=0.131 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchh
Q 040965 208 CVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERW 285 (311)
Q Consensus 208 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 285 (311)
.-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..+.++++.+|+++.+|..++.++...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3567788999999999999998 4455 5567888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHccCC
Q 040965 286 NRATDLRKAMVEAGIR 301 (311)
Q Consensus 286 ~~A~~~~~~m~~~~~~ 301 (311)
++|...|++..+..+.
T Consensus 88 ~~A~~~~~~a~~~~p~ 103 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEAN 103 (117)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999876543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=1.8e-08 Score=70.59 Aligned_cols=118 Identities=8% Similarity=-0.021 Sum_probs=92.1
Q ss_pred HHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-cchHHHHHHHHHhcC
Q 040965 172 AVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPD-ASVLGALLGACKIHG 249 (311)
Q Consensus 172 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 249 (311)
.....|.+.|++++|+..|+++++. .+.+...|..+..+|...|++++|.+.|++. ...|+ ...|..+..++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 3455678889999999999988864 2335677888889999999999999999888 44554 478888888999999
Q ss_pred ChhHHHHHHHHHHhcCCCchhHHHHHHHHH--hccchhHHHHHH
Q 040965 250 AVDLCHEVGRRLLELQPKHCGRYVVLSNIH--AGLERWNRATDL 291 (311)
Q Consensus 250 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 291 (311)
++++|...++++.+..|++..++..+..+. ...+.+++|...
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999887777665553 344556666554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.1e-08 Score=72.65 Aligned_cols=124 Identities=10% Similarity=-0.058 Sum_probs=100.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCC
Q 040965 139 ISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGL 218 (311)
Q Consensus 139 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 218 (311)
...+...|++++|++.|+++ .+|+..+|..+..++...|++++|+..|++.++. -+.+...|..+..+|.+.|+
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhcc
Confidence 56678899999999999864 3567888889999999999999999999999864 12346788899999999999
Q ss_pred HHHHHHHHHhC--CCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 219 LSEAKEFMRSM--PFEPDA----------------SVLGALLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 219 ~~~A~~~~~~~--~~~p~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
+++|.+.|++. -.+++. .++..+..++...|++++|.+.++++.+..|..
T Consensus 86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 99999998886 112111 234456677889999999999999999988875
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=3.5e-08 Score=69.89 Aligned_cols=83 Identities=13% Similarity=0.013 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
+|+.+..+|.+.|++++|++.+++. .+.| +...+..+..++...|++++|...|+++++++|+++.+...+..+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5677888999999999999999988 4456 6677888888999999999999999999999999988888777776655
Q ss_pred chhHH
Q 040965 283 ERWNR 287 (311)
Q Consensus 283 g~~~~ 287 (311)
+...+
T Consensus 144 ~~~~~ 148 (170)
T d1p5qa1 144 RRQLA 148 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2.2e-08 Score=70.23 Aligned_cols=95 Identities=16% Similarity=0.080 Sum_probs=84.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccc
Q 040965 206 YGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLE 283 (311)
Q Consensus 206 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 283 (311)
+......|.+.|++++|...|++. ...| +...|..+...|...|++++|...|+++++.+|.+..+|..++.++...|
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence 344567788999999999999998 4455 55777888889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHccC
Q 040965 284 RWNRATDLRKAMVEAGI 300 (311)
Q Consensus 284 ~~~~A~~~~~~m~~~~~ 300 (311)
++++|...+++......
T Consensus 93 ~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKP 109 (159)
T ss_dssp CHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 99999999999988754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=5.2e-08 Score=64.61 Aligned_cols=103 Identities=13% Similarity=-0.059 Sum_probs=69.9
Q ss_pred HHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCCc---chHHHHHH
Q 040965 171 VAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAG---LLSEAKEFMRSM-PFEPDA---SVLGALLG 243 (311)
Q Consensus 171 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~~---~~~~~l~~ 243 (311)
..+++.+...+++++|.+.|++.+.. -+.++.++..+..++.+.+ ++++|+++++++ ...|+. .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 34666777778888888888887753 2334566777777776544 445677777776 333433 25666777
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 244 ACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 244 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
+|...|++++|...|+++++.+|++..+....
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~ 112 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 112 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 78888888888888888888888876554433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.68 E-value=3.9e-07 Score=64.20 Aligned_cols=93 Identities=11% Similarity=0.026 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM-PFE-PDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
+|+.+..+|.+.|++++|++.+++. ... .+..+|..+..++...|++++|...|+++++++|++..+...+..+..+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5667888899999999999999988 334 46688888889999999999999999999999999988888777776666
Q ss_pred chhH-HHHHHHHHHHH
Q 040965 283 ERWN-RATDLRKAMVE 297 (311)
Q Consensus 283 g~~~-~A~~~~~~m~~ 297 (311)
+... ...+++..|.+
T Consensus 146 ~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 146 KEHNERDRRTYANMFK 161 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHh
Confidence 5543 35556665554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=2.1e-07 Score=65.80 Aligned_cols=114 Identities=11% Similarity=-0.001 Sum_probs=81.3
Q ss_pred HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhc
Q 040965 169 TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIH 248 (311)
Q Consensus 169 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 248 (311)
.+......+.+.|++++|+..|.+.+......+....-. . .....+ ...+|..+..+|.+.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~--~---------~~~~~~--------~~~~~~nla~~y~k~ 75 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEE--A---------QKAQAL--------RLASHLNLAMCHLKL 75 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHH--H---------HHHHHH--------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHH--H---------hhhchh--------HHHHHHHHHHHHHhh
Confidence 344555667777777777777777764322111110000 0 000000 013466677889999
Q ss_pred CChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 249 GAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 249 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
|++++|...++++++.+|+++.++..++.+|...|++++|...|++..+.++.
T Consensus 76 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~ 128 (170)
T d1p5qa1 76 QAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 128 (170)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999887653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.64 E-value=3.4e-07 Score=64.60 Aligned_cols=133 Identities=8% Similarity=-0.020 Sum_probs=92.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCcc-chhhHHHHHHH
Q 040965 134 TWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVP-IMEHYGCVVDL 212 (311)
Q Consensus 134 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~ 212 (311)
.+......+...|++++|++.|.+..+. . ......... .... ...| ....+..+..+
T Consensus 29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~--~----------~~~~~~~~~-------~~~~---~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--V----------EGSRAAAED-------ADGA---KLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--H----------HHHHHHSCH-------HHHG---GGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--h----------hhhhhhhhh-------HHHH---HhChhhHHHHHHHHHH
Confidence 3455666777888888888888776532 0 000000000 0001 1122 44567788899
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHH
Q 040965 213 LGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRA 288 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 288 (311)
|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++++|++..+...+..+..+.....++
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~ 164 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 164 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 5556 4577888889999999999999999999999999988887777766555544443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.62 E-value=3.9e-07 Score=63.12 Aligned_cols=76 Identities=11% Similarity=-0.013 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 040965 204 EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP-DASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIH 279 (311)
Q Consensus 204 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 279 (311)
.+|..+..+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|...|+++++++|++..+...+..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35677888888888999888888887 4344 5678888888888899999999999999888888876666554443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.2e-07 Score=62.73 Aligned_cols=98 Identities=17% Similarity=0.123 Sum_probs=51.7
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc---ccHHHHHHHHHHhhccCCCccc-hhhHHHHHHH
Q 040965 137 AMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA---QLVELGLELFHSMLGKFEVVPI-MEHYGCVVDL 212 (311)
Q Consensus 137 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~ 212 (311)
.+++.+...+++++|.+.|++....+ +.+..++..+..++.+. ++.++|+.++++++.. +..|+ ..++..|..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHH
Confidence 34555555566666666666655543 33455555555555543 2334566666665543 22222 2345555666
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCcc
Q 040965 213 LGRAGLLSEAKEFMRSM-PFEPDAS 236 (311)
Q Consensus 213 ~~~~g~~~~A~~~~~~~-~~~p~~~ 236 (311)
|.+.|++++|.+.|+++ .+.|+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 66666666666666665 4445443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.57 E-value=4.1e-07 Score=62.98 Aligned_cols=66 Identities=8% Similarity=-0.043 Sum_probs=60.6
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.+|..+..+|.+.|++++|+..++++++.+|.+..+|..++.++...|++++|...|++..+.++.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 356678888999999999999999999999999999999999999999999999999999987653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=1.5e-08 Score=84.77 Aligned_cols=132 Identities=8% Similarity=-0.076 Sum_probs=65.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHH
Q 040965 146 SREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEF 225 (311)
Q Consensus 146 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 225 (311)
+.++.|+..+....+.. +++...+..+...+.+.|+.+.|...+...... .| ..++..+.+.+...|++++|.+.
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHH
Confidence 44444444444333221 224455666666677777777777766655421 22 23566677777777777777777
Q ss_pred HHhC-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhcc
Q 040965 226 MRSM-PFEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGL 282 (311)
Q Consensus 226 ~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 282 (311)
|++. ...|+. ..|+.|...+...|+..+|...|.+++...|+.+.++..|...+.+.
T Consensus 175 y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 7777 445544 66777777777777777777777777777777777777777666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.52 E-value=8e-05 Score=56.07 Aligned_cols=159 Identities=9% Similarity=-0.053 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhh-hhhcCcchhHHHHHHHHhhccCCchHHH
Q 040965 25 DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAG-LVNEGGLYLGKQVHGYILRNEIVLSVFM 103 (311)
Q Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (311)
|+..+..|...+.+.+++++|++.|++..+.| +...+..|-..+.. .+...+...+...+....+.+.+ ..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a 72 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NG 72 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---ch
Confidence 45666777777778888888888888887755 22222222222211 11133466677777666665522 22
Q ss_pred HHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHH----cCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 040965 104 GTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLA----SNSREKEALVMFDEMKEKGLRANEITFVAVL 174 (311)
Q Consensus 104 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 174 (311)
...+...+.. ..+.+.|...++..... .......+...+. .......+...+......+ +...+..+.
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 2233333322 34556666666555332 1222222222222 2344555555555544432 334444444
Q ss_pred HHHHc----cccHHHHHHHHHHhh
Q 040965 175 TACAR----AQLVELGLELFHSML 194 (311)
Q Consensus 175 ~~~~~----~~~~~~a~~~~~~~~ 194 (311)
..+.. ..+...+..+++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~ 173 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKAC 173 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhccc
Confidence 44433 233444444444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.51 E-value=9.2e-07 Score=62.76 Aligned_cols=118 Identities=13% Similarity=-0.033 Sum_probs=83.2
Q ss_pred HHHHHccccHHHHHHHHHHhhccCCCcc--chhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCCh
Q 040965 174 LTACARAQLVELGLELFHSMLGKFEVVP--IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAV 251 (311)
Q Consensus 174 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 251 (311)
.......|++++|...|...+.-..-.+ +... .........-++. .....+..+...+...|++
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~----------~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD----------FQFVEPFATALVE----DKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT----------STTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc----------hHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCc
Confidence 3457788889999888888875421111 1000 0000000011111 1124566778889999999
Q ss_pred hHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHH-----ccCCCCCc
Q 040965 252 DLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVE-----AGIRKIPA 305 (311)
Q Consensus 252 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~ 305 (311)
++|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++.+ .|+.|.+.
T Consensus 84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 9999999999999999999999999999999999999999999854 68887654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.8e-07 Score=62.76 Aligned_cols=97 Identities=6% Similarity=-0.061 Sum_probs=59.8
Q ss_pred HHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---C-----cchHHH
Q 040965 170 FVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM-PFEP---D-----ASVLGA 240 (311)
Q Consensus 170 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~-----~~~~~~ 240 (311)
+..+...+...|++++|+..|.+.++. .+.+...+..+..+|.+.|++++|.+.++++ .+.| . ..+|..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 445566677777777777777777653 1224556666777777777777777777665 2122 1 123444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 040965 241 LLGACKIHGAVDLCHEVGRRLLELQPKH 268 (311)
Q Consensus 241 l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 268 (311)
+...+...+++++|...|++.+...|..
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 5555666677777777777766655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.49 E-value=1.4e-06 Score=56.66 Aligned_cols=86 Identities=12% Similarity=0.109 Sum_probs=50.2
Q ss_pred HHHHHhhcCCHHHHHHHHHHccc--c-hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccH
Q 040965 107 LIDLYGKVGCLERAIRVFKSMVI--K-DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183 (311)
Q Consensus 107 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (311)
+...+.+.|++++|+..|++++. | +..+|..+..++.+.|++++|+..|++..+.. +.+...+..+...|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 44455566666666666666522 2 44556666666666666666666666655542 22455556666666666666
Q ss_pred HHHHHHHHHh
Q 040965 184 ELGLELFHSM 193 (311)
Q Consensus 184 ~~a~~~~~~~ 193 (311)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.47 E-value=0.00011 Score=55.32 Aligned_cols=211 Identities=11% Similarity=-0.047 Sum_probs=147.7
Q ss_pred cCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhh----cCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHH
Q 040965 79 EGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGK----VGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREK 149 (311)
Q Consensus 79 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~ 149 (311)
.+++++|.+.|++..+.| +...+..|...|.. ..+...|...+.....+ ++.....+...+.. ..+.+
T Consensus 15 ~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~ 91 (265)
T d1ouva_ 15 EKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTN 91 (265)
T ss_dssp TTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccccccccccchhhH
Confidence 778999999999998877 44455567777776 56889999998887554 44455555554443 57889
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHH----ccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHh----cCCHHH
Q 040965 150 EALVMFDEMKEKGLRANEITFVAVLTACA----RAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGR----AGLLSE 221 (311)
Q Consensus 150 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 221 (311)
.|...++...+.|... ....+...+. .......+...+..... ..+...+..|...|.. ..+...
T Consensus 92 ~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~ 164 (265)
T d1ouva_ 92 KALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKK 164 (265)
T ss_dssp HHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCCccccccc
Confidence 9999999988876322 2222222222 34456677777776654 2345567777777775 456778
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhc----cchhHHHHHHHH
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKI----HGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAG----LERWNRATDLRK 293 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 293 (311)
+..+++...-..+......+...|.. ..+++.|...|+++.+.+. +.++..|+.+|.+ ..+.++|.++|+
T Consensus 165 ~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~~a~~~LG~~y~~G~g~~~n~~~A~~~~~ 242 (265)
T d1ouva_ 165 ALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFK 242 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHH
T ss_pred chhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC--HHHHHHHHHHHHcCCCCccCHHHHHHHHH
Confidence 88888777323466666666666654 5689999999999988754 4577788888875 347899999999
Q ss_pred HHHHccCC
Q 040965 294 AMVEAGIR 301 (311)
Q Consensus 294 ~m~~~~~~ 301 (311)
+..+.|..
T Consensus 243 kAa~~g~~ 250 (265)
T d1ouva_ 243 KGCKLGAK 250 (265)
T ss_dssp HHHHHTCH
T ss_pred HHHHCcCH
Confidence 99887753
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.4e-06 Score=72.54 Aligned_cols=168 Identities=10% Similarity=-0.010 Sum_probs=92.3
Q ss_pred HhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHH
Q 040965 42 FGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAI 121 (311)
Q Consensus 42 ~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 121 (311)
+..+.+.++...+.. ..++.......+..+.... .+.++.++..+....+.. +++...+..+...+.+.|+.++|.
T Consensus 65 y~~~ie~~r~~~k~~--~~~~~~~~~~~~~~~l~~a-~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~ 140 (497)
T d1ya0a1 65 FKNQITTLQGQAKNR--ANPNRSEVQANLSLFLEAA-SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIV 140 (497)
T ss_dssp THHHHHHHHHHHSCS--SCTTTTHHHHHHHHHHHHH-HHHHHHHHHHHTC------------------------------
T ss_pred HHHHHHHHHHhcccc--cCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHH
Confidence 455666777666544 3344332222222111111 233555555555444432 335566777888888999999998
Q ss_pred HHHHHcccch-HhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCc
Q 040965 122 RVFKSMVIKD-VCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200 (311)
Q Consensus 122 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 200 (311)
..+.....++ ..++..+...+...|++++|...|++..+.. +-+...|+.+...+...|+..+|...|.+.+.. .+
T Consensus 141 ~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~--~~ 217 (497)
T d1ya0a1 141 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV--KF 217 (497)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SB
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC
Confidence 8887765553 3567778889999999999999999988863 336689999999999999999999999998863 35
Q ss_pred cchhhHHHHHHHHHhc
Q 040965 201 PIMEHYGCVVDLLGRA 216 (311)
Q Consensus 201 ~~~~~~~~l~~~~~~~ 216 (311)
|...++..|...+.+.
T Consensus 218 ~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 218 PFPAASTNLQKALSKA 233 (497)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6667888888777654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.41 E-value=2.5e-06 Score=59.95 Aligned_cols=64 Identities=9% Similarity=-0.038 Sum_probs=58.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccC
Q 040965 237 VLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGI 300 (311)
Q Consensus 237 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 300 (311)
.|..+..+|.+.|++++|+..++++++++|++..+|..++.++...|++++|...|++..+.++
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P 129 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 129 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4556777889999999999999999999999999999999999999999999999999987654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=2e-06 Score=57.35 Aligned_cols=93 Identities=12% Similarity=0.003 Sum_probs=49.8
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-----hhhHHHHH
Q 040965 136 NAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-----MEHYGCVV 210 (311)
Q Consensus 136 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~ 210 (311)
..+...+.+.|++++|++.|++..+.+ +.+...+..+..+|.+.|+++.|+..++++++...-.+. ..+|..+.
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 344555666666666666666665542 224555666666666666666666666665532000000 12344455
Q ss_pred HHHHhcCCHHHHHHHHHhC
Q 040965 211 DLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~ 229 (311)
..+...+++++|.+.|++.
T Consensus 87 ~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHH
Confidence 5555666666666666554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.27 E-value=1.5e-05 Score=55.86 Aligned_cols=88 Identities=11% Similarity=-0.028 Sum_probs=45.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHcccc-------------------hHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCc
Q 040965 106 ALIDLYGKVGCLERAIRVFKSMVIK-------------------DVCTWNAMISSLASNSREKEALVMFDEMKEKGLRAN 166 (311)
Q Consensus 106 ~l~~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 166 (311)
.....+.+.|++++|+..|.+++.- ....|..+..++.+.|++++|+..+++..+.. +.+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~ 110 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSN 110 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhh
Confidence 3456677788888888888765321 22233444444444555555555555444432 123
Q ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhh
Q 040965 167 EITFVAVLTACARAQLVELGLELFHSML 194 (311)
Q Consensus 167 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 194 (311)
...|..+..++...|+++.|+..|++++
T Consensus 111 ~~a~~~~g~~~~~l~~~~~A~~~~~~al 138 (169)
T d1ihga1 111 TKALYRRAQGWQGLKEYDQALADLKKAQ 138 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence 4444444445555555555555555444
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.23 E-value=2.8e-06 Score=57.99 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=74.4
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHcc----------ccHHHHHHHHHHhhccCCCcc-chhhHHHHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARA----------QLVELGLELFHSMLGKFEVVP-IMEHYGCVV 210 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 210 (311)
|-+.+.+++|.+.|+...+.. +.+...+..+..++... +.+++|+..|+++++. .| +..+|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l---~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh---cchhhHHHhhHH
Confidence 344556777777777776653 33566666666666543 3345566666666532 33 334555555
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHH
Q 040965 211 DLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATD 290 (311)
Q Consensus 211 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 290 (311)
.+|...|++. ++.. ...+.++.|.+.|+++++.+|++...+..|... .+|.+
T Consensus 83 ~~y~~~g~~~------------~~~~---------~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 83 NAYTSFAFLT------------PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHHC------------CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHcccch------------hhHH---------HHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 5554433211 0000 012346889999999999999987544444443 46777
Q ss_pred HHHHHHHccC
Q 040965 291 LRKAMVEAGI 300 (311)
Q Consensus 291 ~~~~m~~~~~ 300 (311)
++.+..+.|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777777664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=8.4e-06 Score=51.01 Aligned_cols=73 Identities=22% Similarity=0.119 Sum_probs=55.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CC----CCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHH
Q 040965 205 HYGCVVDLLGRAGLLSEAKEFMRSM----PF----EPD-ASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVL 275 (311)
Q Consensus 205 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~----~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 275 (311)
.+-.+...+.+.|++++|...|++. +. .++ ..++..+..++.+.|++++|...++++++.+|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3445677777888888888877766 11 111 35677888899999999999999999999999998777766
Q ss_pred HH
Q 040965 276 SN 277 (311)
Q Consensus 276 ~~ 277 (311)
..
T Consensus 87 ~~ 88 (95)
T d1tjca_ 87 KY 88 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.10 E-value=6.9e-05 Score=52.77 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 040965 103 MGTALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREKEALVMFDEM 158 (311)
Q Consensus 103 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m 158 (311)
.+..+...+.+.|++++|+..++++... +...|..++.+|.+.|++.+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3344445555555555555555544221 3444555555555555555555555544
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.07 E-value=9.3e-06 Score=61.24 Aligned_cols=125 Identities=10% Similarity=-0.002 Sum_probs=85.2
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccc-hhhHHHHHHHHHhcCCHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPI-MEHYGCVVDLLGRAGLLS 220 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 220 (311)
..+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 456799999999999988873 447788889999999999999999999998853 554 344555555555555555
Q ss_pred HHHHHHHhCC--CCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchh
Q 040965 221 EAKEFMRSMP--FEPDA-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCG 270 (311)
Q Consensus 221 ~A~~~~~~~~--~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 270 (311)
++..-..... ..|+. ..+......+...|+.++|...++++.+..|..+.
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~ 134 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 134 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCc
Confidence 5443333221 12222 22333345577889999999999999888777653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.06 E-value=1e-05 Score=55.83 Aligned_cols=63 Identities=17% Similarity=0.000 Sum_probs=45.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCC-------C----chhHHHHHHHHHhccchhHHHHHHHHHHHHc
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQP-------K----HCGRYVVLSNIHAGLERWNRATDLRKAMVEA 298 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 298 (311)
..|+.+..+|...|++++|...++++++..| + ...++..++.+|...|++++|...|++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777778888888777777775322 2 1235677888899999999999999887654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.98 E-value=6.9e-06 Score=55.96 Aligned_cols=99 Identities=11% Similarity=-0.007 Sum_probs=66.0
Q ss_pred HccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 040965 178 ARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEV 257 (311)
Q Consensus 178 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 257 (311)
-+.+.+++|...|+..++. .+.+..++..+..+|...+++..+.+ ..+.+++|...
T Consensus 8 ~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e----------------------~~~~~~~Ai~~ 63 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISD----------------------AKQMIQEAITK 63 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHH----------------------HHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhH----------------------HHHHHHHHHHH
Confidence 3445555666666655542 12233445555555544444433332 23456889999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHhccch-----------hHHHHHHHHHHHHccC
Q 040965 258 GRRLLELQPKHCGRYVVLSNIHAGLER-----------WNRATDLRKAMVEAGI 300 (311)
Q Consensus 258 ~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~~~ 300 (311)
|+++++++|++..+|..++.+|...|+ +++|.+.|++..+..+
T Consensus 64 ~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P 117 (145)
T d1zu2a1 64 FEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 117 (145)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence 999999999999999999999987654 6889999998887554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.97 E-value=2.6e-05 Score=53.79 Aligned_cols=92 Identities=11% Similarity=-0.050 Sum_probs=56.9
Q ss_pred HHHccccHHHHHHHHHHhhccCCCcc----------chhhHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCc--
Q 040965 176 ACARAQLVELGLELFHSMLGKFEVVP----------IMEHYGCVVDLLGRAGLLSEAKEFMRSM--------PFEPDA-- 235 (311)
Q Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~-- 235 (311)
.+...|++++|+..|++.++...-.| ....|+.+..+|...|++++|.+.+++. ...++.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 34455666666666666553211111 1245666777777777777777666654 112221
Q ss_pred ---chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 040965 236 ---SVLGALLGACKIHGAVDLCHEVGRRLLELQPK 267 (311)
Q Consensus 236 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 267 (311)
..+..+..+|...|++++|...|++++++.|.
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~ 132 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 132 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 24566677888999999999999998875443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.94 E-value=1.7e-05 Score=59.72 Aligned_cols=117 Identities=14% Similarity=-0.008 Sum_probs=68.7
Q ss_pred hhhcCChHHHHHHHHHhcc--c-cHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCc
Q 040965 5 YVKNGDMDSAILLFENMLK--R-DVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGG 81 (311)
Q Consensus 5 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 81 (311)
..+.|++++|+..+++.++ | |...+..+...++..|++++|.+.|+...+ ..|+.......+...... .+.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~----l~P~~~~~~~~l~~ll~a--~~~ 79 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK----LFPEYLPGASQLRHLVKA--AQA 79 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----HCGGGHHHHHHHHHHHHH--HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----hCCCcHHHHHHHHHHHHh--ccc
Confidence 4567999999999998843 3 778899999999999999999999999987 556654433322211110 111
Q ss_pred chhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHc
Q 040965 82 LYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 82 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 127 (311)
.+++..-.......+.+++...+......+...|+.++|.+.++++
T Consensus 80 ~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a 125 (264)
T d1zbpa1 80 RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQI 125 (264)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 1111111111111122233334444455566667777777776665
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.0027 Score=49.08 Aligned_cols=257 Identities=13% Similarity=0.094 Sum_probs=142.6
Q ss_pred hhhhhcCChHHHHHHHHHhccccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcc
Q 040965 3 DGYVKNGDMDSAILLFENMLKRDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGL 82 (311)
Q Consensus 3 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 82 (311)
+.|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+.- +..+|..+..+|.... . .
T Consensus 22 ~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--------~~~~~k~~~~~l~~~~-e--~ 85 (336)
T d1b89a_ 22 DRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--------STRTWKEVCFACVDGK-E--F 85 (336)
T ss_dssp -------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--------CHHHHHHHHHHHHHTT-C--H
T ss_pred HHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--------CHHHHHHHHHHHHhCc-H--H
Confidence 456688999999999987654 3456677788999999988887652 3446666666554322 1 1
Q ss_pred hhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcc---cchHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 040965 83 YLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMV---IKDVCTWNAMISSLASNSREKEALVMFDEMK 159 (311)
Q Consensus 83 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 159 (311)
.. .++.......+......++..|-..|.+++...+++... ..+...++-++..|++.+ .++..+.++..
T Consensus 86 ~l-----a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~- 158 (336)
T d1b89a_ 86 RL-----AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELF- 158 (336)
T ss_dssp HH-----HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHH-
T ss_pred HH-----HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhc-
Confidence 11 122222223344444668888999999999999998763 346667888888888864 34444444332
Q ss_pred HcCCCCcHH----------HHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 160 EKGLRANEI----------TFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 160 ~~~~~~~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+...|.. .|.-++..|.+.|+++.|..++-. ..++..-....+..+.+..+.+...++....
T Consensus 159 --s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~------~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~y 230 (336)
T d1b89a_ 159 --WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN------HPTDAWKEGQFKDIITKVANVELYYRAIQFY 230 (336)
T ss_dssp --STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH------STTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred --cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH------cchhhhhHHHHHHHHHccCChHHHHHHHHHH
Confidence 1122211 133344444555555544433211 1222223334445555555555444443322
Q ss_pred -CCCCCc-----------chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHH
Q 040965 230 -PFEPDA-----------SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLR 292 (311)
Q Consensus 230 -~~~p~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 292 (311)
..+|+. .....++..+.+.+++.....+++..... ++.....+|...|...++++.-....
T Consensus 231 L~~~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~--n~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 231 LEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH--NNKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHCGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcCHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc--ChHHHHHHHHHHHhCcchhHHHHHHH
Confidence 112211 11233555566777777777777765543 24457889999999998876544444
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=4.6e-05 Score=47.48 Aligned_cols=66 Identities=12% Similarity=-0.106 Sum_probs=55.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-------chhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 236 SVLGALLGACKIHGAVDLCHEVGRRLLELQPK-------HCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 236 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
..+-.+...+.+.|++++|...|+++++..|. ...++..|+.++.+.|++++|...+++.++.++.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~ 78 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence 33446777889999999999999999975433 2457899999999999999999999999987654
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.72 E-value=0.0055 Score=47.25 Aligned_cols=217 Identities=12% Similarity=0.020 Sum_probs=123.5
Q ss_pred ccHHHHHHHHHHHHhcCCHhHHHHHHHHhhcCCCCCCCchHHHHHHHHHhhhhhhcCcchhHHHHHHHHhhccCCchHHH
Q 040965 24 RDVVSWTSIINGFVRNGCFGEAICVFKNMMGNVNLVRPNEATYVSVLSSCAGLVNEGGLYLGKQVHGYILRNEIVLSVFM 103 (311)
Q Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 103 (311)
+|..--..++..|.+.|.++.|..+|..+.. |..++..+.. .++++.|.+...+. + +..+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----------~~rl~~~~v~---l~~~~~avd~~~k~---~---~~~~ 71 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----------FGRLASTLVH---LGEYQAAVDGARKA---N---STRT 71 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----------HHHHHHHHHT---TTCHHHHHHHHHHH---T---CHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----------HHHHHHHHHh---hccHHHHHHHHHHc---C---CHHH
Confidence 4444455677888899999999999987643 3444443333 44477777666533 2 4567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHcccchHhhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccH
Q 040965 104 GTALIDLYGKVGCLERAIRVFKSMVIKDVCTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLV 183 (311)
Q Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 183 (311)
|..+...+.+.....-|.-+ ......++.....++..|-..|.+++...+++..... -.++...++.++..|++.+ .
T Consensus 72 ~k~~~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 72 WKEVCFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-h
Confidence 77778888777666544221 1112234455567888999999999999999987643 2457778888888888765 4
Q ss_pred HHHHHHHHHhhccCCCcc--------chhhHHHHHHHHHhcCCHHHHHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHH
Q 040965 184 ELGLELFHSMLGKFEVVP--------IMEHYGCVVDLLGRAGLLSEAKEFMRSMPFEPDASVLGALLGACKIHGAVDLCH 255 (311)
Q Consensus 184 ~~a~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 255 (311)
++..+.+...-.. ..+ ....|.-++-.|.+.|+++.|..++-.- .++......++..+.+.++.+...
T Consensus 149 ~kl~e~l~~~s~~--y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~--~~~~~~~~~f~e~~~k~~N~e~~~ 224 (336)
T d1b89a_ 149 QKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH--PTDAWKEGQFKDIITKVANVELYY 224 (336)
T ss_dssp HHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS--TTTTCCHHHHHHHHHHCSSTHHHH
T ss_pred HHHHHHHHhcccc--CCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc--chhhhhHHHHHHHHHccCChHHHH
Confidence 5555555544221 111 1122344555555555555555443322 245555666777788888888777
Q ss_pred HHHHHHHhcCCC
Q 040965 256 EVGRRLLELQPK 267 (311)
Q Consensus 256 ~~~~~~~~~~~~ 267 (311)
++....++..|.
T Consensus 225 ~~i~~yL~~~p~ 236 (336)
T d1b89a_ 225 RAIQFYLEFKPL 236 (336)
T ss_dssp HHHHHHHHHCGG
T ss_pred HHHHHHHHcCHH
Confidence 777776665553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=97.21 E-value=0.0094 Score=37.94 Aligned_cols=141 Identities=13% Similarity=0.117 Sum_probs=97.6
Q ss_pred HHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHH
Q 040965 142 LASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSE 221 (311)
Q Consensus 142 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 221 (311)
+.-.|..++..+++.+.... .+..-|+.++.-....-+-+....+++.+-+.+.+.|-. -...++.++...+
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n---- 83 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINN---- 83 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTT----
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhc----
Confidence 45578888888888887764 255667777766666667777777777776554444432 1223344443332
Q ss_pred HHHHHHhCCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHHHHccCC
Q 040965 222 AKEFMRSMPFEPDASVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAMVEAGIR 301 (311)
Q Consensus 222 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 301 (311)
.+...+..-+.....+|+-+.-.++++.+.+.+..++.....++.+|.+.|...++-+++.+.-+.|++
T Consensus 84 -----------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 84 -----------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp -----------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred -----------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333445555677788889999999999888766666678889999999999999999999998888874
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.036 Score=44.61 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=8.8
Q ss_pred HHhhcCCHHHHHHHHHHc
Q 040965 110 LYGKVGCLERAIRVFKSM 127 (311)
Q Consensus 110 ~~~~~g~~~~A~~~~~~~ 127 (311)
.....|++..|..+...+
T Consensus 163 ~~l~~~~~~~a~~l~~~l 180 (450)
T d1qsaa1 163 LAMKAGNTGLVTVLAGQM 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHTC
T ss_pred HHHHcCChhhHHHHHhhC
Confidence 333445555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.98 E-value=0.013 Score=38.37 Aligned_cols=16 Identities=13% Similarity=-0.031 Sum_probs=8.6
Q ss_pred CHhHHHHHHHHhhcCC
Q 040965 41 CFGEAICVFKNMMGNV 56 (311)
Q Consensus 41 ~~~~A~~~~~~~~~~~ 56 (311)
++++|++.|++..+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4555555555555444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.75 E-value=0.023 Score=37.04 Aligned_cols=108 Identities=5% Similarity=-0.119 Sum_probs=65.1
Q ss_pred cchhHHHHHHHHhhccCCchHHHHHHHHHHHhhcCCHHHHHHHHHHcccc-hHhhHHHHHHHHHc----CCCHHHHHHHH
Q 040965 81 GLYLGKQVHGYILRNEIVLSVFMGTALIDLYGKVGCLERAIRVFKSMVIK-DVCTWNAMISSLAS----NSREKEALVMF 155 (311)
Q Consensus 81 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~ 155 (311)
++++|.++|++..+.|.+. ....|. .....+.++|+..+++..+. ++.....|...|.. ..+.++|.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~~---a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~ 82 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMF---GCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 82 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChh---hhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHH
Confidence 4788888888887776332 222232 23345677788777776443 45555555555543 45677888888
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHHc----cccHHHHHHHHHHhhcc
Q 040965 156 DEMKEKGLRANEITFVAVLTACAR----AQLVELGLELFHSMLGK 196 (311)
Q Consensus 156 ~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 196 (311)
++..+.| +......|...|.. ..+.++|..+|++..+.
T Consensus 83 ~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 83 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 8777765 23334444444443 34677777777776554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.64 E-value=0.033 Score=35.39 Aligned_cols=66 Identities=14% Similarity=0.035 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCc
Q 040965 133 CTWNAMISSLASNSREKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVV 200 (311)
Q Consensus 133 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 200 (311)
......++.+.++|+-++-.++++.+.+.+ .|++.....+..+|.+.|...++.+++.++.++ |.+
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K 152 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 152 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence 334556677788888888888888866643 667777778888888888888888888888776 654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.10 E-value=0.009 Score=38.23 Aligned_cols=71 Identities=10% Similarity=-0.035 Sum_probs=44.7
Q ss_pred cchhhHHHHHHHHHhc---CCHHHHHHHHHhC-CCCCC-c-chHHHHHHHHHhcCChhHHHHHHHHHHhcCCCchhH
Q 040965 201 PIMEHYGCVVDLLGRA---GLLSEAKEFMRSM-PFEPD-A-SVLGALLGACKIHGAVDLCHEVGRRLLELQPKHCGR 271 (311)
Q Consensus 201 ~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 271 (311)
|+..+--...-++.+. .+.++++.+++++ ...|. . ..+..|.-+|.+.|++++|...++++++.+|++..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 3433443444455543 3556777887777 22343 2 344556667888888888888888888888887644
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.91 E-value=0.12 Score=32.85 Aligned_cols=53 Identities=15% Similarity=0.143 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHhhccCCCccch-hhHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCcc
Q 040965 182 LVELGLELFHSMLGKFEVVPIM-EHYGCVVDLLGRAGLLSEAKEFMRSM-PFEPDAS 236 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~ 236 (311)
+.++++.+|+++.+. .+.+. ..+..|.-+|.+.|++++|.+.++.+ .+.|+..
T Consensus 53 d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 53 DERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp HHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 445666666665542 11121 34444555566666666666666665 4445443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.59 E-value=0.38 Score=28.78 Aligned_cols=63 Identities=17% Similarity=0.133 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHccccHHHHHHHHHHhhccCCCccchhhHHHHHH
Q 040965 147 REKEALVMFDEMKEKGLRANEITFVAVLTACARAQLVELGLELFHSMLGKFEVVPIMEHYGCVVD 211 (311)
Q Consensus 147 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 211 (311)
|.-++.+-+..+......|++....+.+.+|.+.+++..|.++|+.+..+.+. +...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~--~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 56677777888878888899999999999999999999999999988776443 3446666654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.11 E-value=0.66 Score=27.72 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHhhccCCCccchhhHHHHHHHHHhcCCHHHHHHHHHhC
Q 040965 182 LVELGLELFHSMLGKFEVVPIMEHYGCVVDLLGRAGLLSEAKEFMRSM 229 (311)
Q Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 229 (311)
+.-+..+-++.+... .+.|++....+-+.+|.+.+++..|.++|+..
T Consensus 21 D~we~rrgmN~l~~~-DlVPeP~Ii~aALrAcRRvND~alAVR~lE~v 67 (105)
T d1v54e_ 21 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVV 67 (105)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444555555555443 56667666776677777777777777776665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.83 E-value=2.4 Score=33.52 Aligned_cols=52 Identities=8% Similarity=-0.004 Sum_probs=40.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCchhHHHHHHHHHhccchhHHHHHHHHHH
Q 040965 242 LGACKIHGAVDLCHEVGRRLLELQPKHCGRYVVLSNIHAGLERWNRATDLRKAM 295 (311)
Q Consensus 242 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 295 (311)
+..+...|....|...+..+.+.. ++.-...++....+.|.++.|+....+.
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 455778999999999999887643 2335667788889999999998877654
|
| >d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: MIF4G domain-like domain: Programmed cell death 4, PDCD4 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.24 E-value=2.7 Score=26.59 Aligned_cols=65 Identities=14% Similarity=0.176 Sum_probs=46.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHcccc---hHhhHHHHHHHHHcCCCHH--HHHHHHHHHHHcCCCCcHHH
Q 040965 105 TALIDLYGKVGCLERAIRVFKSMVIK---DVCTWNAMISSLASNSREK--EALVMFDEMKEKGLRANEIT 169 (311)
Q Consensus 105 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~ 169 (311)
..++.-|...|+.++|...++++..| ...++..+..++-+.+... .+..++..+...|+-+....
T Consensus 11 ~~ll~EY~~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~is~~~i 80 (129)
T d2nsza1 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQM 80 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 56888899999999999999999766 3344555555665655543 35778999988876654443
|