Citrus Sinensis ID: 040980

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190---

MEEYPEEWRTPPVCLISVVGLAEHEHHRLISTHLLSEQPPTNTLALPDLSKLLHLLSKKPKQPLDATSSSSPAAGILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGLASVEDNNCIKISRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIKSEQSGKLECISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELGPGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSLLMPGEEFKKVFTIVPKVESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSKPDFKVAADVGKREMESIASE

ccccccccccccccEEEEEccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccccHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccEEEEEEEEEEcccccccccEEEEEEEEEEccccEEEEEEEEEEEccccccEEEEcccccccccccccccccccccccEEEEcccEEEEEEEEEcccccEEEEEEEEEEEcccEEEEEEcccccccccccccccccccccccccccccccccccEEEEEcccccEEEEccccccEEEccEEEEEEEEEcccccccccEEEEEEEcccccccccccccccccccccEEEEEccccccccccccccccccccccccEEccccccccEEEEEEEEEEcccccEEEEEEEEEEEcccccccEEEEEEEEEEEEEEEEEEEEEEEEccccccccccccccccccHHHHccccccccEEEEEEcccccEEcEEEEEEEEEEcccccccEEEEcccccccccccccccccEEEEEEEEEccccccccccEEEEEEEEEcccccccccccccccEEEEEcccccccccccccEEEccccccccccccEEEEEEEEcccccEEEEEEEEEccccEEEEccccccEEEccccEEEEEEEEEEcccccccccEEEEEEccccccccccccccEEEEEccccccccccccccccccccccc

cccccHHHcccccHEEEEEccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccccccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHccccccccccccccccccccHHHccHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccHcHHccccccEccccccEEEEEccccccccEEEEEEEEcccccccccEEEEEEEEEccccccEEEEEEEEEEccccccEEEEccccccccccccccccccccccccccccccEEEEEEEEccccccEEEEEEEEEEEccccEEEEEcccccccccccccccccccccccccccEEEEcccccEEEccccccEEEEEccccccccccEEEEEEEEEEccccEEEEEEEEEEEEEEcccccccccccccccccEEEEEEcccccccccccccccHHcccccccEEccccccccEEEEEEEEEEcccccEEEEEEEEEEEcccccEEEEEEEEEEEEEEEEEEEEEEEEEEccccccccccccccccccHHHHcccccccccEEEEEccccccEEEEEEEEEEEcccccccEEEEEEccccccccccEEccccccEEEEEEEccccccccccEEEEEEEEEcccccccccccccccEEEEEEEccccEcccccEEEEEEcccccEEcccEEEEEEEEccccEEEEEEEEEcccccEEEEcccEEEEEEcccccEEEEEEEEEcccccEcccEEEEEcccccHHccccccccEEEEcccccccHHHHHHccccHHHHccc

meeypeewrtppvclisVVGLAEHEHHRLISthllseqpptntlalpDLSKLLHLlskkpkqpldatsssspaagilkrdwlmkhrtrVPSVVAALFssdqvygdpaqwlqvCSDLDLLKaaikprniKLVVIVVNDtlsdhndvYEERFIALRKRAELDSKYiltfnpntasDLQISLNRLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMigtstrlppiqRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAElldtssvpaqsISSLVLatadrpltesefhpsYYYQLAAHYLKEKRSSLEIALSMSEsaseldssadsvapsvyiGQFDRlleqgdtvskqpltdedytRYVIAEGKRFQDTYEILGLLKKSCESYGnhkarrmgsfcGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMaalpvssgtdvqpfsfkecgpagpptlsqrEIIHKEVFELVSREVglasvednncikisrdnplhlevdlvSPLRLVILASVAFHEQIIKPGVSTLITVSLlsqlpltvEINQLEIQFNQSECNFVIINaqrpllaatndglqvhraestplilITNRWLRLTYEIKSEQSGKLECISVVAKmgphfticcraespasmedlplwkfedrvetfptkdpalafsgqkathveepdpqvdvdlgasgpalvgesfmipvtvasrghdiysgeLKINLvdvkggglfspreteassmESHHVELlgivgpeeeelgpgEIEKIQQSfglvsipflksgeswsckleikwhrpkpvMLFVSlgysplnnestAQKVHVHKSLQIEGMAAIAVGHrfmlpfrrdplllsrikpvsdseqlaslplnetSLLIVSAKNCTEVSLQLQSVaidnedgdservcsvqhggenlsgpsllmpgeefKKVFTIVPkvessklglgtVCLRwrrdcgiddhsgsceTEAWVVskhklpdvevelsplvvslecppyavlgepfTYTIKIWNQTKLLQEVKFCVADAQSFvlsgvhndtvfvlpkskhilcykvvplgsgllqlpkvTVISVRYsaefqasntastvfvfpskpdfkvAADVGKREMESIASE

meeypeewrtppVCLISVVGLAEHEHHRLISthllseqpptNTLALPDLSKLLHLLSKKpkqpldatsssspaagILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNdtlsdhndvYEERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLayyrdegrriktrvekktlnvnsidlniryCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIgtstrlppiQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLeqgdtvskqpltdedytRYVIAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGLASVEDNNCIKISRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRaestplilitnRWLRLTYEIKSEQSGKLECISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELGPGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGgenlsgpsllmpGEEFKKVFTIvpkvessklglgtvCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQASntastvfvfpskpdFKVAADVGKREMESIASE

MEEYPEEWRTPPVCLISVVGLAEHEHHRLISTHLLSEQPPTNTlalpdlskllhllskkpkqplDATSSSSPAAGILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRssleialsmsesaseldssadsVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGLASVEDNNCIKISRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIKSEQSGKLECISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHvellgivgpeeeelgpgeieKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSLLMPGEEFKKVFTIVPKVESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKlpdvevelsplvvsleCPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSKPDFKVAADVGKREMESIASE

*******WRTPPVCLISVVGLAEHEHHRLISTHLL***************************************GILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLK*****************************VYIGQFDRLLEQGDTVS*QPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKEC*******LSQREIIHKEVFELVSREVGLASVEDNNCIKISRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIKSEQSGKLECISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETF******************************SGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLF***************ELLGIV***********IEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPV******ASLPLNETSLLIVSAKNCTEVSLQLQSVAI**************************MPGEEFKKVFTIVPKVESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSK********************

*EEYPEEWRTPPVCLISVVGLAEHEHHRLIS***************************************SPAAGILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTL*****VYEERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLAYYRDEGRR************NSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPA*S*******TADRPLTESEFHPSYYYQLAAHYLKEKRSSLE***********************YIGQFDRLLEQG******************AEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECG**********EIIHKEVFEL****************KISRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFV******************************NRWLRLTYEIKSEQSGKLECISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVE***************************SIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYS**********VHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQ******SGPSLLMPGEEFKKVFTIVPKVESSKLGLGTVCLRWRRDC***********EAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSKPDF*****V***EM*S****

*********TPPVCLISVVGLAEHEHHRLISTHLLSEQPPTNTLALPDLSKLLHLLSKK************PAAGILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEIALSM************SVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGLASVEDNNCIKISRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIKSEQSGKLECISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPR**********HVELLGIVGPEEEELGPGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSLLMPGEEFKKVFTIVPKVESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSKPDFKVAAD************

*EEYPEEWRTPPVCLISVVGLAEHEHHRLISTHLLSEQPPTNTLALPDLSKLLHLLSKKPKQPLDATSSSSPAAGILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEIALSMS*********A*SV*PSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGLASVEDNNCIKISRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIINAQRPLL***N**L*****ESTPLILITNRWLRLTYEIKSEQSGKLECISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELGPGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSLLMPGEEFKKVFTIVPKVESSKLGLGTVCLRWRRDCG*****GSCETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSKPDFKVAADVG**********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1193	2.2.26 [Sep-21-2011]
A6QLC7		1133	Trafficking protein parti	yes	no	0.816	0.859	0.248	4e-49
Q7Z392		1133	Trafficking protein parti	yes	no	0.817	0.860	0.240	2e-47
Q5ZI89		1132	Trafficking protein parti	yes	no	0.818	0.862	0.236	5e-43
Q1RLX4		1132	Trafficking protein parti	yes	no	0.829	0.874	0.232	1e-42
B2RXC1		1133	Trafficking protein parti	yes	no	0.206	0.217	0.298	4e-23

>sp\|A6QLC7\|TPC11_BOVIN Trafficking protein particle complex subunit 11 OS=Bos taurus GN=TRAPPC11 PE=2 SV=1	Back alignment and function desciption

 Score =  197 bits (501), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 280/1128 (24%), Positives = 466/1128 (41%), Gaps = 154/1128 (13%)

Query: 75   GILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSD----LDLLKAAIKPRNIKL 130
            GILK  W+ KH   VP++V   +  D    D  QW +  S+    +++++ +++ RN K+
Sbjct: 79   GILKTGWMNKHLNLVPALVVVFYELD---WDEPQWKEKQSECATRVEIVRQSLQGRNTKV 135

Query: 131  VVIVVNDT--LSDHNDVY-EERFIALRKRAELDSKYILTFNPNTASDLQISLNRLASIFG 187
             V+++     L    DV   ER  AL    EL  K +    P+T   L   + RL + F 
Sbjct: 136  AVVLIQKKTPLPPGEDVIASERAAALCNACELSGKSLFVL-PHT-DHLVGYIIRLENAFY 193

Query: 188  ELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALRFYEDAYH 247
            E +  YY  E RR+K+  E      + + L +R+ FK+A ++E ++D   AL+ Y  AY+
Sbjct: 194  EHAQTYYYTEIRRVKSHKEFLNKTTHQL-LFVRHQFKIAFFSELKQDTQNALKNYRTAYN 252

Query: 248  MLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLV 307
            ++ E+    T +      +EIKT+A  +++KI  +        +AI  F +H    KK +
Sbjct: 253  LVHELRAHETNI------LEIKTMAGFINYKICRLCFQHNTPLDAIAQFRKHIDLCKKKI 306

Query: 308  GAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLA 367
            G+ E+ F H  W+S+QF  F +L D     A  +    + T +         P +YYQ A
Sbjct: 307  GSAELAFEHAAWMSKQFQAFGDLFDE----AIKLGLTAIQTQN---------PGFYYQQA 353

Query: 368  AHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQF--DRLLEQGDTVSKQPLTDE 425
            A+Y +E R  L  AL   E AS    + D +     +  F   R   QG  V    L+D 
Sbjct: 354  AYYAQE-RKQLAKALCNHE-ASVTYPNPDPLETQAGVLDFYGQRSWRQG--VLSFDLSDP 409

Query: 426  DYTRYVIA----EGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDF 481
            +  +  I     + +    +  I+ LL  +   +  +K  RM S    QM  EY+   D+
Sbjct: 410  EKEKVGILAIQLKERSVVHSEVIITLLSNAVAQFKKYKCPRMKSHLMVQMGEEYYYAKDY 469

Query: 482  NNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTD 541
              A +L D V   YR EGW TLL  +L    +CS     ++D++ YSLE+          
Sbjct: 470  TKALKLLDYVMCDYRSEGWWTLLTSILTTALKCSYLMAQLKDYITYSLELL--------- 520

Query: 542  VQPFSFKECGPAGPPTLSQREIIHKEVFELVSRE------------VGLASVEDNNCIKI 589
                     G A      Q+  I K +  ++  E            V  A     + I +
Sbjct: 521  ---------GRASTLKDDQKSRIEKNLINVLMNESPDPEPDCDILAVKTAQKLWVDRISL 571

Query: 590  SRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQF 649
            +  N   + V    P    +     FH       V     V L +  P  +  ++L I F
Sbjct: 572  AGSNVFTIGVQDFVPF---VQCKAKFHAPSFHVDVPVQFDVYLKADCPHPIRFSKLCISF 628

Query: 650  NQSECN-FVIINAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIKSEQSGK-LEC 707
            N  E N F +I       +  +D L+        L+    R     +  K+E  GK +E 
Sbjct: 629  NNQEYNQFCVIEEA----SKASDVLENLTQGKMCLVPGKTRKFLFKFVAKTEDVGKKIEI 684

Query: 708  ISVVAKMGPHFTICC-------RAESPASMEDLPLWKFEDRVETFPTKDPALAFSG---Q 757
             SV   +G     C          ++ ++ E L   +   R    P  D  + + G   Q
Sbjct: 685  TSVDLVLGSEAGRCVVLNWQGGGGDAASAQEALQASRSFKRRPRLP--DSEVHWDGIVIQ 742

Query: 758  KATHVEEPDPQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFS 817
             +T +    P + V L    PAL  E + + VTV S  H+      K  + DVK      
Sbjct: 743  ASTMIISRVPNISVHLRHDPPALTNEMYCLVVTVQS--HE------KSPIRDVKLTAGLK 794

Query: 818  PRETEASSMESHHVELLGIVGPEEEELGPGEIEKIQQSFG--LVSIPF--LKSGESWSCK 873
            P + +A+  +  HV L G              E   +S+   L  IP   L+ GE     
Sbjct: 795  PGQ-DANLTQKTHVTLHGT-------------ELCDESYPALLTDIPIGDLQPGEQLEKA 840

Query: 874  LEIKWHRPKPVMLFVSLGY---SPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFM-LPFR 929
            + ++       M  V + Y   + +  + T  K H  +++ IE +    V  +F+   F 
Sbjct: 841  VYVRCGTVGSRMFLVYVSYLINTAIEGKETVCKCHKDETVTIETVFPFDVAVKFVSTKFE 900

Query: 930  RDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCS 989
                + + I  +  ++ L++ P    +L IVS    +E+ L      +D  +   +RV  
Sbjct: 901  HLERVYADIPFLLMTDLLSASPW---ALTIVS----SELQLAPSMTPVDQLESQVDRV-- 951

Query: 990  VQHGGENLSGPSLLMPGEEFKKVFTI-VPKVESSKLGLGT--VCLRWRRDCGIDDHSGSC 1046
                        +L  GE   + F +  P V + + G+ T    + W+R    D      
Sbjct: 952  ------------VLQTGESASECFCLRCPSVGNVEGGVATGHYVISWKRTSATD----GV 995

Query: 1047 ETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVAD 1106
               + V++   LP V VE  PL V+ + P +  + E       + N+T L+Q+V+  V  
Sbjct: 996  PVISTVIT---LPHVIVENIPLHVNADLPSFGRVRESLPVRYHLQNKTDLVQDVEISVEP 1052

Query: 1107 AQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRY 1154
            + +F+ SG+    + +LP ++  + Y   PL +G  QLP + +  +R+
Sbjct: 1053 SDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINLLRF 1100

Involved in endoplasmic reticulum to Golgi apparatus trafficking at a very early stage.
Bos taurus (taxid: 9913)

>sp\|Q7Z392\|TPC11_HUMAN Trafficking protein particle complex subunit 11 OS=Homo sapiens GN=TRAPPC11 PE=1 SV=2	Back alignment and function description

>sp\|Q5ZI89\|TPC11_CHICK Trafficking protein particle complex subunit 11 OS=Gallus gallus GN=TRAPPC11 PE=2 SV=1	Back alignment and function description

>sp\|Q1RLX4\|TPC11_DANRE Trafficking protein particle complex subunit 11 OS=Danio rerio GN=trappc11 PE=2 SV=1	Back alignment and function description

>sp\|B2RXC1\|TPC11_MOUSE Trafficking protein particle complex subunit 11 OS=Mus musculus GN=Trappc11 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1193
255583456		1183	conserved hypothetical protein [Ricinus	0.988	0.996	0.700	0.0
359477035		1185	PREDICTED: uncharacterized protein LOC10	0.987	0.994	0.691	0.0
356559193		1187	PREDICTED: trafficking protein particle	0.989	0.994	0.643	0.0
356531323		1190	PREDICTED: trafficking protein particle	0.989	0.992	0.639	0.0
224117640		1142	predicted protein [Populus trichocarpa]	0.948	0.991	0.66	0.0
186532794		1190	uncharacterized protein [Arabidopsis tha	0.981	0.984	0.625	0.0
296088513		1042	unnamed protein product [Vitis vinifera]	0.865	0.990	0.695	0.0
449434072		1193	PREDICTED: trafficking protein particle	0.981	0.981	0.617	0.0
297797797		1184	binding protein [Arabidopsis lyrata subs	0.976	0.983	0.618	0.0
10177110		1194	unnamed protein product [Arabidopsis tha	0.958	0.958	0.591	0.0

>gi\|255583456\|ref\|XP_002532487.1\| conserved hypothetical protein [Ricinus communis] gi\|223527812\|gb\|EEF29911.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 1697 bits (4396), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 838/1197 (70%), Positives = 998/1197 (83%), Gaps = 18/1197 (1%)

Query: 1    MEEYPEEWRTPPVCLISVVGLAEHEHHRLISTHLLSEQPPTNTLALPDLSKLLHLLSKKP 60
            MEEYPEE RTPPV LI++VG  EH  H +ISTHLL+EQPP NTLALPDLSK+  LL+   
Sbjct: 1    MEEYPEELRTPPVSLIALVGCGEH--HPVISTHLLAEQPPMNTLALPDLSKISLLLNSFS 58

Query: 61   KQPLDATSSSSPAAGILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQWLQVCSDLDLLK 120
             + L  T     A GI+KRDWL+KHRT+VPSVVA+LF+SD V GDPAQWLQ+CSDL+ LK
Sbjct: 59   DRNLPPT-----AGGIIKRDWLLKHRTKVPSVVASLFTSDHVSGDPAQWLQLCSDLEDLK 113

Query: 121  AAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFNPNTASDLQISLN 180
              I+P++IKLVVIVV+ +  D  D+ E+R  ALRKRAELDSK ++ FNP  +  L+ SLN
Sbjct: 114  TLIRPKSIKLVVIVVHSSPVD--DINEDRINALRKRAELDSKSLILFNPADSVRLKQSLN 171

Query: 181  RLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVYAEFRRDWVEALR 240
            +L SIF EL+  YYRDEGRRIKTRVEKK+ N  S +LNIRYCFKVAVYAEFRRDW EAL+
Sbjct: 172  KLGSIFAELANTYYRDEGRRIKTRVEKKSFN--SHELNIRYCFKVAVYAEFRRDWAEALK 229

Query: 241  FYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHN 300
            FYEDAYH+LREM+ T+ RLP IQRLVEIKT+AE LHFKIST+LLHGGK+ EAITWF QH 
Sbjct: 230  FYEDAYHILREMVATTNRLPVIQRLVEIKTVAEQLHFKISTLLLHGGKVIEAITWFRQHI 289

Query: 301  ASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHP 360
            ASYKKL+GA EV+FLHWEW+SRQFLVFAELL+TSS    S +S  LATADR LTE EF P
Sbjct: 290  ASYKKLLGAAEVIFLHWEWMSRQFLVFAELLETSSKALTSPTSPTLATADRSLTEWEFQP 349

Query: 361  SYYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQ 420
            +YYYQLA HYLKEKR+SLE+ALSM ++A E D  A+SV PS+Y+GQF RL+EQGD  S Q
Sbjct: 350  AYYYQLAGHYLKEKRTSLELALSMLQTADETDGRAESVEPSIYVGQFARLVEQGDAFSMQ 409

Query: 421  PLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDD 480
            PL DE+YT Y I+EGKRFQD++EI+ LLK+S +SY N KA+RM S CGFQMA EYF++ D
Sbjct: 410  PLADEEYTYYAISEGKRFQDSFEIIALLKRSYDSYINLKAQRMASLCGFQMAREYFSVGD 469

Query: 481  FNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGT 540
              NAK  FD VA  YRQEGWVTLLWEVLG+LRECSRK GIV +F+EYSLEMAALP+SSGT
Sbjct: 470  LKNAKFFFDSVAVLYRQEGWVTLLWEVLGFLRECSRKCGIVEEFIEYSLEMAALPISSGT 529

Query: 541  DVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGLASVEDNNCIKISRDNPLHLEVD 600
             +Q F  KE GPAGP +L Q+EIIHKEVF+LV+ E GL SV+DN  + ++RDNPLHLE+D
Sbjct: 530  GIQSFRSKEFGPAGPASLEQKEIIHKEVFQLVNGETGLMSVDDNGILHVNRDNPLHLEID 589

Query: 601  LVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVIIN 660
            LVSPLR+V+LASVAFHEQIIKPGV TL+T+SLLSQLP+T++I+Q+E+QFNQS+CNF+I+N
Sbjct: 590  LVSPLRMVLLASVAFHEQIIKPGVPTLLTLSLLSQLPVTIDIDQVEVQFNQSDCNFIILN 649

Query: 661  AQRPLLAATNDGLQVHRAESTP-LILITNRWLRLTYEIKSEQSGKLECISVVAKMGPHFT 719
            +Q+P  AA + GLQ  R E+ P L L+TN+WLRLTY I SEQSGKLECI VVAKMGPHFT
Sbjct: 650  SQKPPSAAMSIGLQGRRTETAPSLALVTNKWLRLTYAITSEQSGKLECIYVVAKMGPHFT 709

Query: 720  ICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPDPQVDVDLGASGPA 779
            ICCRAE+PASM+DLPLWKFEDRVETFP KDPALAFSGQK   VEEPDPQVD+ LGA+GPA
Sbjct: 710  ICCRAENPASMDDLPLWKFEDRVETFPIKDPALAFSGQKVAQVEEPDPQVDLILGATGPA 769

Query: 780  LVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGP 839
            LVGE F+IPVTVAS+GH ++SGELKINLVDV+GGGLFSPRE E  SM+SHHVELLG+ GP
Sbjct: 770  LVGECFVIPVTVASKGHSVFSGELKINLVDVRGGGLFSPREAEPFSMDSHHVELLGVSGP 829

Query: 840  E---EEELGPGEIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLN 896
            E   E + GP +I KIQQSFGL+S+PFL+ GESWSCKLEIKWHRPKP+MLFVSLGY P N
Sbjct: 830  EGEGESQTGPDKIIKIQQSFGLISVPFLQDGESWSCKLEIKWHRPKPIMLFVSLGYFPDN 889

Query: 897  NESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSDSEQLASLPLNETS 956
            NE T+QKVHVHKSLQIEG  A+ + H+FMLPFR+DPLLLS++KP  +S+Q ASLPLNETS
Sbjct: 890  NEMTSQKVHVHKSLQIEGKNALLISHQFMLPFRQDPLLLSKLKPNPNSDQSASLPLNETS 949

Query: 957  LLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSLLMPGEEFKKVFTIV 1016
            +L+VSAKNC+EV LQLQS++I+ +D D+ER+ S+QH GE+L GP+ L+PGEEFKKVFT++
Sbjct: 950  VLVVSAKNCSEVPLQLQSMSIEVDD-DTERLFSLQHSGEDLLGPACLVPGEEFKKVFTVI 1008

Query: 1017 PKVESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDVEVELSPLVVSLECPP 1076
            P+VESS + LG+V L+WRRD    D   S  TEAWV ++HKLPDV VELSPLV+ +ECPP
Sbjct: 1009 PEVESSNVNLGSVSLKWRRDSQNKDQLHSA-TEAWVSTRHKLPDVNVELSPLVLIVECPP 1067

Query: 1077 YAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVP 1136
            YA+LG+PFTY++KI NQT LLQE+ F +AD QSFVL+G H+DTVFVLPKS+H+L YK+VP
Sbjct: 1068 YAILGDPFTYSVKIRNQTPLLQELNFSLADVQSFVLAGSHSDTVFVLPKSEHLLGYKIVP 1127

Query: 1137 LGSGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSKPDFKVAADVGKREMESIASE 1193
            L SGL QLP+VTV SVRYSA FQ S  A+TVFVFPSKP   + AD+G RE+ES+ +E
Sbjct: 1128 LASGLQQLPRVTVTSVRYSAGFQPSTAAATVFVFPSKPCVDM-ADMGDREIESLVAE 1183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359477035\|ref\|XP_002265701.2\| PREDICTED: uncharacterized protein LOC100265343 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356559193\|ref\|XP_003547885.1\| PREDICTED: trafficking protein particle complex subunit 11-like [Glycine max]	Back alignment and taxonomy information

>gi\|356531323\|ref\|XP_003534227.1\| PREDICTED: trafficking protein particle complex subunit 11-like [Glycine max]	Back alignment and taxonomy information

>gi\|224117640\|ref\|XP_002317629.1\| predicted protein [Populus trichocarpa] gi\|222860694\|gb\|EEE98241.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|186532794\|ref\|NP_201396.4\| uncharacterized protein [Arabidopsis thaliana] gi\|332010748\|gb\|AED98131.1\| uncharacterized protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|296088513\|emb\|CBI37504.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449434072\|ref\|XP_004134820.1\| PREDICTED: trafficking protein particle complex subunit 11-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297797797\|ref\|XP_002866783.1\| binding protein [Arabidopsis lyrata subsp. lyrata] gi\|297312618\|gb\|EFH43042.1\| binding protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|10177110\|dbj\|BAB10400.1\| unnamed protein product [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1193
TAIR\|locus:2152079		1190	AT5G65950 "AT5G65950" [Arabido	0.981	0.984	0.592	0.0
UNIPROTKB\|A6QLC7		1133	TRAPPC11 "Trafficking protein	0.206	0.217	0.305	1.2e-49
ZFIN\|ZDB-GENE-030131-1723		1132	trappc11 "trafficking protein	0.206	0.217	0.301	2.5e-47
DICTYBASE\|DDB_G0287157		1524	DDB_G0287157 "DUF1683 family p	0.162	0.127	0.344	7.3e-41
UNIPROTKB\|Q7Z392		1133	TRAPPC11 "Trafficking protein	0.358	0.377	0.291	1e-40
UNIPROTKB\|Q5ZI89		1132	TRAPPC11 "Trafficking protein	0.358	0.378	0.291	4.3e-40
MGI\|MGI:2444585		1133	Trappc11 "trafficking protein	0.358	0.377	0.282	1.3e-39
FB\|FBgn0035416		1338	gry "gryzun" [Drosophila melan	0.273	0.243	0.281	1.5e-17
WB\|WBGene00015173		1107	B0412.3.2 [Caenorhabditis eleg	0.165	0.178	0.272	3.1e-10
ASPGD\|ASPL0000056440		1258	AN1374 [Emericella nidulans (t	0.171	0.162	0.254	1e-07

TAIR\|locus:2152079 AT5G65950 "AT5G65950" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3572 (1262.5 bits), Expect = 0., P = 0.
 Identities = 713/1203 (59%), Positives = 870/1203 (72%)

Query:     1 MEEYPEEWRTPPVCLISVVGLAEHEHHRLISTHLLSEQPPTNTXXXXXXXXXXXXXX--- 57
             MEEYPEE RTPPV L+++ G AE   H  I+ +L S+QPP N                  
Sbjct:     1 MEEYPEELRTPPVSLVALFGYAEL--HASITKYLHSQQPPINALAFPDFSQISLLLAHDD 58

Query:    58 --XXXXXXXDATS---SSSP----AAGILKRDWLMKHRTRVPSVVAALFSSDQVYGDPAQ 108
                      D  S   S+SP      GILKRDWL+KHRT+VP++VAA F S  ++GDP Q
Sbjct:    59 QISRTSSFRDPLSVSDSASPIPSRCGGILKRDWLLKHRTKVPALVAAFFPSHHIFGDPTQ 118

Query:   109 WLQVCSDLDLLKAAIKPRNIKLVVIVVNDTLSDHNDVYEERFIALRKRAELDSKYILTFN 168
             WLQVCSDLD LK+ I+P+NIKLVV+VV    S H D+ ++R +ALRKRAELDSKY+L FN
Sbjct:   119 WLQVCSDLDSLKSVIRPKNIKLVVVVVQS--SPHEDISDDRLVALRKRAELDSKYVLFFN 176

Query:   169 PNTASDLQISLNRLASIFGELSLAYYRDEGRRIKTRVEKKTLNVNSIDLNIRYCFKVAVY 228
              +  S+L +SL+RLAS F EL+L+YYR+EGRRIK+R+EK++ N  S+DLN+RYCFKVAVY
Sbjct:   177 SSIVSELTLSLSRLASAFAELALSYYREEGRRIKSRIEKRSSN--SLDLNVRYCFKVAVY 234

Query:   229 AEFRRDWVEALRFYEDAYHMLREMIGTSTRLPPIQRLVEIKTIAELLHFKISTVLLHGGK 288
             AEFRRDW EAL+FYEDAYH L EMIGTSTRLP IQRLVEIK IAE LHFKIST+LLHGGK
Sbjct:   235 AEFRRDWGEALKFYEDAYHSLHEMIGTSTRLPAIQRLVEIKIIAEQLHFKISTLLLHGGK 294

Query:   289 LKEAITWFHQHNASYKKLVGAPEVVFLHWEWLSRQFLVFAELLDTSSVPAQSISSLVLAT 348
             L EA+TWFHQH  SY+K+VG+ E +FLHW+W+SRQFLVFAELL+TSS   QS++S    T
Sbjct:   295 LIEAVTWFHQHKTSYEKVVGSTEFIFLHWDWMSRQFLVFAELLETSSATGQSLTSSNQGT 354

Query:   349 ADRPLTESEFHPSYYYQLAAHYLKEKRXXXXXXXXXXXXXXXXXXXXXXVAPSVYIGQFD 408
             A+  LTE EF+P+YYYQLAAHYLK+K+                      + PSVY+GQF 
Sbjct:   355 AEISLTEFEFYPAYYYQLAAHYLKDKKSALELLLSMSEIAQEIDSSSASITPSVYVGQFA 414

Query:   409 RLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCG 468
             +LLE+G+ ++   +TDE+YTRY I+E KR QD+ +I+  LK+S ES+ N KA+RM + C 
Sbjct:   415 QLLEKGEAITLHSITDEEYTRYTISEAKRVQDSLQIIAWLKRSYESFTNLKAQRMAALCA 474

Query:   469 FQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYS 528
             F++A EYF L D NNAK  FD  AN YRQEGWVTLLWEVLGYLRECSR    ++DFVE+S
Sbjct:   475 FEVAREYFDLADPNNAKFFFDIAANLYRQEGWVTLLWEVLGYLRECSRNLDALKDFVEFS 534

Query:   529 LEMAALPVSSGTDVQPFSFKECGPAGPPTLSQREIIHKEVFELVSREVGLASVEDNNCIK 588
             LEM ALPV+S  +      K  GP GP T+S RE IH+EVF LV RE  L S  + +  K
Sbjct:   535 LEMVALPVTSYENSGNLRNKNYGPGGPATISGRESIHQEVFTLVCREAELLSSTEGSGFK 594

Query:   589 ISRDNPLHLEVDLVSPLRLVILASVAFHEQIIKPGVSTLITVSLLSQLPLTVEINQLEIQ 648
             ++ D+PLHLE+DLVSPLR V+LASVAFH+Q+IKP      T+SLLS LPL VEI+ LE+Q
Sbjct:   595 LATDSPLHLEIDLVSPLRPVLLASVAFHDQMIKPHALCSFTLSLLSHLPLPVEIDHLEVQ 654

Query:   649 FNQSECNFVIINAQRPLLA-ATNDGLQVHRAESTPL-ILITNRWLRLTYEIKSEQSGKLE 706
             FNQS CNFVI N+QRPL A A+N      + E+ PL +L+ N WLRLTY IKSEQSGKLE
Sbjct:   655 FNQSTCNFVIRNSQRPLWASASNTVKSGSQVENAPLLVLVPNNWLRLTYAIKSEQSGKLE 714

Query:   707 CISVVAKMGPHFTICCRAESPASMEDLPLWKFEDRVETFPTKDPALAFSGQKATHVEEPD 766
             C+SV+AK+GP FTIC RAESPA+MEDLP+WK E+RVE+ PTKDP LA  GQKAT V+EP+
Sbjct:   715 CLSVLAKLGPLFTICSRAESPAAMEDLPVWKHENRVESLPTKDPVLAVFGQKATQVDEPE 774

Query:   767 PQVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSM 826
             PQVDV LGASGPALVGE F +P+ V S+GH +YSGELKINLVDV GGGLFSPRE E  S+
Sbjct:   775 PQVDVSLGASGPALVGEDFAMPIVVTSKGHAVYSGELKINLVDVGGGGLFSPREAEPFSL 834

Query:   827 ESHHXXX---XXXXXXXXXXXXXXXXXKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKP 883
             ESHH                       KIQQSFGLVS+P+LK GESWSCKLEIKWHRPKP
Sbjct:   835 ESHHVEICGIDGAEGNNESESETGSIKKIQQSFGLVSVPYLKEGESWSCKLEIKWHRPKP 894

Query:   884 VMLFVSLGYSPLNNESTAQKVHVHKSLQIEGMAAIAVGHRFMLPFRRDPLLLSRIKPVSD 943
             VMLFVSLGY P  +E+  QKVH+HKSLQIEG   + + +RFMLP+RRD LLL+RIKP  D
Sbjct:   895 VMLFVSLGYLPHGSEANTQKVHIHKSLQIEGKMPLLISNRFMLPYRRDHLLLNRIKPAPD 954

Query:   944 SEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSL- 1002
             SE ++SLPLNE S+L+VSAKNC+E++L+L S++I+ +D   E  C +Q GG     PS  
Sbjct:   955 SEDVSSLPLNEKSVLVVSAKNCSEIALKLVSMSIEFDDEQGETSCLIQQGGGCGDSPSSA 1014

Query:  1003 -LMPGEEFKKVFTIVPKVESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKXXXX 1061
              L PGEEFKKVFT++P   + KLGLG++ L+WRR+       G   TEA+V +KHK    
Sbjct:  1015 NLAPGEEFKKVFTVIPTTRTPKLGLGSIHLKWRRE-------GGNITEAYVSTKHKLPEV 1067

Query:  1062 XXXXXXXXXXXXCPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVF 1121
                          PPYA+LGEPFTY ++I NQT+LLQE KF +ADAQSFVLSG H++TV 
Sbjct:  1068 NVEASPLVMSLDSPPYAILGEPFTYAVRICNQTQLLQEAKFGLADAQSFVLSGSHSNTVS 1127

Query:  1122 VLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAEFQASNTASTVFVFPSKPDFKVAAD 1181
             VLPKS+H+L YK+VPL  G  QLPK+T+ S RY+AEFQ S  AS+VFVFPS P  + A  
Sbjct:  1128 VLPKSEHVLSYKLVPLTCGEQQLPKITLTSARYAAEFQPSAVASSVFVFPSAPQAEKAIS 1187

Query:  1182 VGK 1184
               K
Sbjct:  1188 TSK 1190

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006486 "protein glycosylation" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB\|A6QLC7 TRAPPC11 "Trafficking protein particle complex subunit 11" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-1723 trappc11 "trafficking protein particle complex 11" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0287157 DDB_G0287157 "DUF1683 family protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q7Z392 TRAPPC11 "Trafficking protein particle complex subunit 11" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5ZI89 TRAPPC11 "Trafficking protein particle complex subunit 11" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

MGI\|MGI:2444585 Trappc11 "trafficking protein particle complex 11" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0035416 gry "gryzun" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

WB\|WBGene00015173 B0412.3.2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000056440 AN1374 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XI001238	hypothetical protein (1142 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1193
pfam11817		215	pfam11817, Foie-gras_1, Foie gras liver health fam	2e-60
pfam07919		333	pfam07919, Gryzun, Gryzun, putative trafficking th	6e-36
pfam07919		333	pfam07919, Gryzun, Gryzun, putative trafficking th	1e-19
pfam07919		333	pfam07919, Gryzun, Gryzun, putative trafficking th	0.003

>gnl\|CDD\|221243 pfam11817, Foie-gras_1, Foie gras liver health family 1	Back alignment and domain information

 Score =  206 bits (525), Expect = 2e-60
 Identities = 77/274 (28%), Positives = 111/274 (40%), Gaps = 62/274 (22%)

Query: 264 RLVEIKTIAELLHFKISTVLLHGGKLKEAITWFHQHNASYKKLVGAPE--VVFLHWE-WL 320
           R  E + +A+++ F+I  +LL  G+   A+  F  H    K +VG          WE W 
Sbjct: 1   RWNEARLLADVIAFRICRLLLWNGQPSAAVRQFRAHRERVKDVVGRRGKGTANYGWEAWE 60

Query: 321 SRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEI 380
           +RQ+ VFAEL+D + +P  +              E   HP YYY  AA +L  +R+    
Sbjct: 61  ARQYEVFAELIDKAGIPGLTPLQ---TQFGLQYLELLHHPGYYYYKAADHLMRRRALA-- 115

Query: 381 ALSMSESASELDSSADSVAPSVYIGQFDRLLEQGDTVSKQPLTDEDYTRYVIAEGKRFQD 440
                E   E  S                                               
Sbjct: 116 -----EQIPEGQSPI--------------------------------------------- 125

Query: 441 TYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGW 500
               + LL K+ E +   K  RM ++   +MA EY  L D++ A +L D VA  YR+EGW
Sbjct: 126 ----IELLSKAYEEFKKRKQTRMAAYLSLEMAEEYLRLGDWSKALELLDPVALSYRKEGW 181

Query: 501 VTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAAL 534
            TLL EVL  LREC+R  G V+D +    E+ + 
Sbjct: 182 WTLLEEVLWALRECARLVGDVKDVLAVDWELLSR 215

Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first. The C-terminus of this region contains TPR repeats. Length = 215

>gnl\|CDD\|219641 pfam07919, Gryzun, Gryzun, putative trafficking through Golgi	Back alignment and domain information

>gnl\|CDD\|219641 pfam07919, Gryzun, Gryzun, putative trafficking through Golgi	Back alignment and domain information

>gnl\|CDD\|219641 pfam07919, Gryzun, Gryzun, putative trafficking through Golgi	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1193
KOG4386		809	consensus Uncharacterized conserved protein [Funct	100.0
PF07919		554	Gryzun: Gryzun, putative trafficking through Golgi	100.0
PF11817		247	Foie-gras_1: Foie gras liver health family 1; Inte	100.0
KOG2625		348	consensus Uncharacterized conserved protein [Funct	100.0
PF06159		249	DUF974: Protein of unknown function (DUF974); Inte	99.79
KOG1931		1156	consensus Putative transmembrane protein [General	99.54
KOG4386		809	consensus Uncharacterized conserved protein [Funct	99.35
PF08626		1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	99.12
PF12742		57	Gryzun-like: Gryzun, putative Golgi trafficking	98.66
PF12584		147	TRAPPC10: Trafficking protein particle complex sub	98.49
PF12735		306	Trs65: TRAPP trafficking subunit Trs65; InterPro:	97.95
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.19
KOG1840		508	consensus Kinesin light chain [Cytoskeleton]	95.92
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	94.33
KOG1586		288	consensus Protein required for fusion of vesicles	94.13
PF05753		181	TRAP_beta: Translocon-associated protein beta (TRA	93.14
KOG1953		1235	consensus Targeting complex (TRAPP) subunit [Intra	92.5
PF00927		107	Transglut_C: Transglutaminase family, C-terminal i	91.49
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	90.33
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	89.99
PF07919		554	Gryzun: Gryzun, putative trafficking through Golgi	89.72
PF06159		249	DUF974: Protein of unknown function (DUF974); Inte	88.7
COG2956		389	Predicted N-acetylglucosaminyl transferase [Carboh	87.54
PF13432		65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	87.07
PF07705		101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	86.53
PF12862		94	Apc5: Anaphase-promoting complex subunit 5	86.33
PF13176		36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	86.18
PF13414		69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	85.94
PF00207		92	A2M: Alpha-2-macroglobulin family; InterPro: IPR00	85.61
PF14559		68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	85.5
PRK10803		263	tol-pal system protein YbgF; Provisional	85.49
TIGR02917		899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	85.11
PF12895		84	Apc3: Anaphase-promoting complex, cyclosome, subun	84.04
PF13584		484	BatD: Oxygen tolerance	83.2
TIGR02795		119	tol_pal_ybgF tol-pal system protein YbgF. Members	82.54
PF13174		33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	81.76
KOG1155		559	consensus Anaphase-promoting complex (APC), Cdc23	81.19
PF07705		101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	80.83
PF07719		34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.43

>KOG4386 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

Probab=100.00  E-value=3.9e-71  Score=614.89  Aligned_cols=763  Identities=13%  Similarity=0.055  Sum_probs=585.5

Q ss_pred             HHHHHHHHHHhcccCCCCCcccccccccCCCCCCccccCchhHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCCC-
Q 040980          321 SRQFLVFAELLDTSSVPAQSISSLVLATADRPLTESEFHPSYYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVA-  399 (1193)
Q Consensus       321 srQ~~~faeL~~~a~~~~~~~~~~~~~~~~~~l~~~~~~PG~yy~~AA~~~~~Rr~~~~~~~~~~~~~~~~~~~~~~~~-  399 (1193)
                      +.|++.|++++|.+..-+++.         .    .+++|||||+.+|-|.++|+++...-..+ +. .-....|+..+ 
T Consensus         2 ~sd~~A~~~~~e~~~~~~Lss---------~----Q~~e~~F~~~~qAfYqQ~~Kti~s~~~tH-q~-~l~~~N~~~~~~   66 (809)
T KOG4386|consen    2 ISDNLAADRAHELCQACSLSS---------K----QLLELAFHELCQAFYQQRLKTIRSRQDTH-QG-LLKTKNSVISTR   66 (809)
T ss_pred             cchhhhhhHHHHHHHHhCccH---------H----hhhchhHHHHHHHHHHHHHHHHHHhhccc-hh-hhccCCCCcccc
Confidence            568999999999997655432         1    24799999999999999998764321111 00 00012222222 


Q ss_pred             ---CceeeeccccccccCCcccCCCCChhhHhH---hHhh-hCcccccHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHH
Q 040980          400 ---PSVYIGQFDRLLEQGDTVSKQPLTDEDYTR---YVIA-EGKRFQDTYEILGLLKKSCESYGNHKARRMGSFCGFQMA  472 (1193)
Q Consensus       400 ---~~~~~gq~~~~~~~~d~~~~~~l~~~e~~~---~al~-~~~~~~hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA  472 (1193)
                         ..-|+||  +.|++|-..-+  |.+-+.++   +|.. +..++-|+..+|.+|+++..||++|++.||.+.++..|+
T Consensus        67 ~~~~L~F~~s--~a~~~~l~S~e--L~~~kskq~~~~A~~~e~~~~l~an~~Ia~Lk~~a~Q~~~Y~~P~~nS~~~V~~G  142 (809)
T KOG4386|consen   67 GMCELCFLHS--TALEPHLASIE--LLLWKSKQCYQFAHLFEVAGGLSANTEIAALKRNAPQNVPYPSPDANSSSTVFFG  142 (809)
T ss_pred             ceEEEEeccc--ccccccceeEe--eccchhhHHHHHHHHHHHhcCcchhhHHHHHhhcccccCCCCCCCcCccceeEec
Confidence               2469999  88998854222  33333322   3333 456677899999999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHccCCCCCCCCCCCCccccCCC
Q 040980          473 VEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQGIVRDFVEYSLEMAALPVSSGTDVQPFSFKECGP  552 (1193)
Q Consensus       473 ~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~~~~~~v~~~leLls~~~~~~~~~~~~~~~~~~p  552 (1193)
                      ++|+..++|.+|.+.++.++.+|+.+|||.+.+.++..+..|.++...-++|..+..+|+...                 
T Consensus       143 q~~~~~n~~~~A~~~ve~a~~~~~~q~~~~~~~~Vis~~~~~~~~~qk~~~~~~~k~~mm~~~-----------------  205 (809)
T KOG4386|consen  143 QRPWRINHEGLATAEVEAAAVTAIIQRLVVNHEGVISLLSAALAQYQKYGCLRMKKKVMMEMN-----------------  205 (809)
T ss_pred             ccceeecchhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhh-----------------
Confidence            999999999999999999999999999999999999999999999999999999999999642                 


Q ss_pred             CCCCChhhhHHHHHHHHHHHhccccCCCcc-CC---------Cccccc--CCCCceeeeeeccccceeEEEEEEecCcee
Q 040980          553 AGPPTLSQREIIHKEVFELVSREVGLASVE-DN---------NCIKIS--RDNPLHLEVDLVSPLRLVILASVAFHEQII  620 (1193)
Q Consensus       553 ~~~~~~~er~~i~~~l~~~l~~~~~~~~~~-~~---------~~~~~~--~~~~~~L~~d~~~pl~~~~~~~~~F~~~~~  620 (1193)
                       +.....|.+++.+....+++.+.++++++ |-         |...|.  +..-..|-.....|   ++.|...|+.|..
T Consensus       206 -t~~~nne~qR~~r~~~~Vv~dna~~~s~~~Dmm~~~T~a~~~~~~Iq~~~~~~~ql~~sD~V~---~l~~~~~~~~P~~  281 (809)
T KOG4386|consen  206 -TCYANNEIQRALRFWGLVVKDNALPYSIRKDMMHRATWAAYAITSIQDYAVCCMQLMPSDCVK---GLLDVLDGKPPGS  281 (809)
T ss_pred             -hhhcchHHHHHHHHHHHHhccCCCCCCcchhHHHHHHHHHHHHHHHHHhhhhhheechhhhhh---HHHHHhcCCCCCC
Confidence             23445788999999999999987776654 21         122221  12222333333445   4889999999999


Q ss_pred             cCCCeEEEEEEEEcCCCceeEecEEEEEEecCCccEEE--EcCCccccccccCCcccccCCCCceEeecCCeEEEEEEEe
Q 040980          621 KPGVSTLITVSLLSQLPLTVEINQLEIQFNQSECNFVI--INAQRPLLAATNDGLQVHRAESTPLILITNRWLRLTYEIK  698 (1193)
Q Consensus       621 ~~g~~~~l~v~L~S~~p~~I~~~~l~V~f~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~~~~~l~l~p~~~~~~~~~~~  698 (1193)
                      +...+...+..|+..+|.++.+.+..+.|+...+++..  ..+      ..++.+++ ..+.+..++.|+++++.-+++.
T Consensus       282 ~~~~~~~~q~~L~t~~~~~~~~~q~~~aF~~Q~~k~~~l~~Et------~~s~~~~q-tv~Q~s~~~V~~e~~s~i~q~i  354 (809)
T KOG4386|consen  282 PFPNDDISQEQLHTYQLQWQHVLQEHPAFVVQASKIAELFLET------RVSFLDQQ-TVEQDSKVAVRVEIVSKIEQVI  354 (809)
T ss_pred             CCCChhHHHHHHHhcCccHHHHHHhCcHHHhhHhHHHHHHHHH------HHHHHHHh-hhccCceEEeeHHHHHHHHHHH
Confidence            99999999999999999999999999999888877642  222      11222222 2334678999999888777764


Q ss_pred             --eccce-EEEEEEEEEEeCCccccccc------CCCCcc-ccccc-cccccccccCCCCCCcccccccccceeeeCCCC
Q 040980          699 --SEQSG-KLECISVVAKMGPHFTICCR------AESPAS-MEDLP-LWKFEDRVETFPTKDPALAFSGQKATHVEEPDP  767 (1193)
Q Consensus       699 --~~~~g-~~~v~~V~l~lg~~~~~~~~------~e~~~~-~~~~~-~W~~~~~~~~~~~~~~~~~is~~~~~~I~~~~p  767 (1193)
                        .+.+| ..+++++.+..|+...+||-      +++.++ -+... .=.|. ++...+. ...+.+..+...++..+.|
T Consensus       355 ~~nd~~~~~~~~k~~~~A~~t~n~~~~li~~~~~~G~v~~Sks~~~q~~~~~-~~~n~~q-~~~~tv~~~t~~l~~a~~~  432 (809)
T KOG4386|consen  355 RLNDVSVHLKAKKFPPDANQTANDADCLIYDPIHLGSVEVSKSKPLQRVVLL-DLKNAKQ-NWIVTVTKVTLDLGNAIRG  432 (809)
T ss_pred             hhcchhheeeeecCCcccccCCCCCcEEEecCCCCcchhhhhhhhhhhHHHh-hcccccc-ceEEEeeehhhhhhhhccC
Confidence              45666 77799999999999888851      111111 00000 00011 1122221 1223555667778999999


Q ss_pred             ceEEEcCCCCCeeeccEEEEEEEEeeCCcccccceEEEEEeeccCCccCCCCccccCccccceEEEccccCCCccccCCc
Q 040980          768 QVDVDLGASGPALVGESFMIPVTVASRGHDIYSGELKINLVDVKGGGLFSPRETEASSMESHHVELLGIVGPEEEELGPG  847 (1193)
Q Consensus       768 ~v~v~~~~~~paL~gE~~~i~i~V~n~~~~~~~~~l~l~~~~~~~~~l~~~~~~~~~~~~s~~v~l~g~~~~~~~~~~~~  847 (1193)
                      ++++...|.+|++-+|+|..-++|...+..+.- +.+.+      +|++ ++++.++ .+-+|+...|+.+|++  .++.
T Consensus       433 NIe~~~~~~~~~~~~E~~~~~lki~~~kts~~~-e~~~k------v~~~-~Ge~tsL-T~rn~~k~~~~~~~~d--~~~~  501 (809)
T KOG4386|consen  433 NIEFDENALNRNCHVENIIGFLKIGVAKTSVKL-ESVEK------VDCL-IGEVTSL-TIRNTCKSSPIHGLLD--FKRK  501 (809)
T ss_pred             cceeccccCCcccchheEEEEEEeeechhhhhh-hhhhh------cCcc-cccccce-eeecccccCCchhhhh--hhhH
Confidence            999999999999999999999999888744322 21221      5666 4555556 4678999999999854  3444


Q ss_pred             hhhhhccccceeecCCCCCCCeEEEEEEEEEeCCcceEEEEEEEecCCCCccc---ceeEEEEEEEEEEeecceEEeeee
Q 040980          848 EIEKIQQSFGLVSIPFLKSGESWSCKLEIKWHRPKPVMLFVSLGYSPLNNEST---AQKVHVHKSLQIEGMAAIAVGHRF  924 (1193)
Q Consensus       848 ~i~~l~~s~~~i~v~~l~~ges~~~~l~i~~~~~g~~~l~vsv~Y~~~~~~~~---~~~~~~~k~~~i~v~~Pf~vs~~f  924 (1193)
                      ..+       .+.++++.+||....++|+||..+|.+|+.+.++|.++...+.   .|++++..|.+++++.||+|+.+|
T Consensus       502 ~~k-------~~~a~~v~~~EQ~~KmlyvrcgtvgsrmflvyvsyLinttVeekeivckchkdeTvtietvfpfdvavkF  574 (809)
T KOG4386|consen  502 EQK-------HAEAAAVLFVEQELKMLYVRCGTVGSRMFLVYVSYLINTTVEEKEIVCKCHKDETVTIETVFPFDVAVKF  574 (809)
T ss_pred             hhc-------cCchhhcchHHHHHHHHHHhhhhhccchhhHHHHHHhhhHHHHhhHhhhccccceEEEEEEeeeeeeeee
Confidence            433       4678899999998888999999999999999999998776432   389999999999999999999999


Q ss_pred             eccccCCccccccCCCCCcccccccCCCCCcceEEEeeeeccccceeEEEEEEEecCCCceeeecccCCCCCCCCCcccC
Q 040980          925 MLPFRRDPLLLSRIKPVSDSEQLASLPLNETSLLIVSAKNCTEVSLQLQSVAIDNEDGDSERVCSVQHGGENLSGPSLLM 1004 (1193)
Q Consensus       925 ~~~~~~~p~ll~~~~~~~~~e~l~~~~~~~~~ll~~~i~~~s~~pl~i~sv~l~~~~~~~~~~~~~~~~~~~~l~~~~L~ 1004 (1193)
                      .+               +.+++++.++..-+++++..+...++|.+.|.+.+++...    ..|.+ .++++.....-++
T Consensus       575 vs---------------tkfehlervyadIpfllmtdLlsaspwAltIVsSelqlap----smttv-dqleSqvdnvilq  634 (809)
T KOG4386|consen  575 VS---------------TKFEHLERVYADIPFLLMTDLLSASPWALTIVSSELQLAP----SMTTV-DQLESQVDNVILQ  634 (809)
T ss_pred             eh---------------hhhhhccChhhhhhHHHHHHHhhhchHHHHHHHHHHhhhh----hheee-ecccccccchhhh
Confidence            86               2355666555555566666677778899999888887663    34443 3345556778999


Q ss_pred             CCCeeeEEEEEeeCC---CCCcccceEEEEEEEcCCCCCCCCCCCCccceEeeeeccCCccccCCCeEEEeecCCceeeC
Q 040980         1005 PGEEFKKVFTIVPKV---ESSKLGLGTVCLRWRRDCGIDDHSGSCETEAWVVSKHKLPDVEVELSPLVVSLECPPYAVLG 1081 (1193)
Q Consensus      1005 ~gd~~~~~f~l~p~~---~~~~~~~G~~~I~WrR~~~~~~~~~~~~~~~~~~s~~~LP~v~~~~~pl~v~~~~P~~~~vg 1081 (1193)
                      .||+.+.+||+.+..   ..+.+++|+|.|.|||.+...+.       +.+++.++||+|.++.+||.|++++|++|+|+
T Consensus       635 tgEsasecfclqcpslgniEggvatGhyiisWkRtsameNi-------piittVitLphviVe~iPlhvnadlpsfgrVR  707 (809)
T KOG4386|consen  635 TGESASECFCLQCPSLGNIEGGVATGHYIISWKRTSAMENI-------PIITTVITLPHVIVEAIPLHVNADLPSFGRVR  707 (809)
T ss_pred             cccceeeeeeEeccccccccCCCccceEEEEEeecccccCC-------CceeeecccccceeeeccceeecCCCCcceec
Confidence            999999999998643   46889999999999999875542       78999999999999999999999999999999


Q ss_pred             CeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEECcccceecCeeEEEecccccc-cc-
Q 040980         1082 EPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLGSGLLQLPKVTVISVRYSAE-FQ- 1159 (1193)
Q Consensus      1082 ~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~~G~~~LP~l~l~~~~~~~~-~~- 1159 (1193)
                      +|++++|+++|+|..+|++++++|+||+|||||.||++++||||.++++.|++|||++||++||+|.|...|+++. .+ 
T Consensus       708 eslpvkyhLqnktdlvqdveisvepsDaFMFSGlkqirlriLPGteqemlynfypLmAGyqqlPslninllrfpnfTnQl  787 (809)
T KOG4386|consen  708 ESLPVKYHLQNKTDLVQDVEISVEPSDAFMFSGLKQIRLRILPGTEQEMLYNFYPLMAGYQQLPSLNINLLRFPNFTNQL  787 (809)
T ss_pred             ccccEEEEeccccceeeeEEeecccchhheecccceEEEEEcCCCceEEEEEEehhhchhhhCCcccccCccCCchHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999872 11 


Q ss_pred             -CCCCccEEEEecCCCccc
Q 040980         1160 -ASNTASTVFVFPSKPDFK 1177 (1193)
Q Consensus      1160 -~~~~~~~VfV~P~~~~~~ 1177 (1193)
                       -.+.|+.|||+|++|.++
T Consensus       788 lrRfiPtsIFVkPqgrlmd  806 (809)
T KOG4386|consen  788 LRRFIPTSIFVKPQGRLMD  806 (809)
T ss_pred             HHhhcCceEEEcccccccC
Confidence             127999999999998665

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []	Back alignment and domain information

>KOG2625 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins	Back alignment and domain information

>KOG1931 consensus Putative transmembrane protein [General function prediction only]	Back alignment and domain information

>KOG4386 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking	Back alignment and domain information

>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>KOG1840 consensus Kinesin light chain [Cytoskeleton]	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins	Back alignment and domain information

>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins	Back alignment and domain information

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]	Back alignment and domain information

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B	Back alignment and domain information

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins	Back alignment and domain information

>PF12862 Apc5: Anaphase-promoting complex subunit 5	Back alignment and domain information

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A	Back alignment and domain information

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A	Back alignment and domain information

>PF00207 A2M: Alpha-2-macroglobulin family; InterPro: IPR001599 This entry contains serum complement C3 and C4 precursors and alpha-macrogrobulins	Back alignment and domain information

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A	Back alignment and domain information

>PRK10803 tol-pal system protein YbgF; Provisional	Back alignment and domain information

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein	Back alignment and domain information

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A	Back alignment and domain information

>PF13584 BatD: Oxygen tolerance	Back alignment and domain information

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF	Back alignment and domain information

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A	Back alignment and domain information

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins	Back alignment and domain information

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1193
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 69.5 bits (169), Expect = 5e-12
 Identities = 94/585 (16%), Positives = 179/585 (30%), Gaps = 171/585 (29%)

Query: 33  HLLSEQPPTNTLALPDLSKLLHLLSKKPKQPLDATSSSSPAAGILKRD--WLM---KHRT 87
           H++  +   +         L   L  K ++ +           +L+ +  +LM   K   
Sbjct: 53  HIIMSKDAVSGTLR-----LFWTLLSKQEEMVQKF-----VEEVLRINYKFLMSPIKTEQ 102

Query: 88  RVPSVVAALFSS--DQVYGDPAQW--LQVCSD---LDLLKAAIKPRNIKLVVI------- 133
           R PS++  ++    D++Y D   +    V      L L +A ++ R  K V+I       
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162

Query: 134 ---VVNDTLSDHNDVYEERF--------IALRKRAELDSKYILTFNPNTASDLQISLNRL 182
              V  D    +    + +         +      E   + +         +     +  
Sbjct: 163 KTWVALDVCLSYK--VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 183 ASIFGELSLAYYRDEGRR-IKTRVEKKTL----NVNS---ID-LNIRYCFKVAVYAEFRR 233
           ++I  +L +   + E RR +K++  +  L    NV +    +  N+  C K+ +   F++
Sbjct: 221 SNI--KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-C-KILLTTRFKQ 276

Query: 234 --DWVEALR------------FYED-AYHMLREMIGTST-RLPP----IQRLVEIKTIAE 273
             D++ A                 D    +L + +      LP           +  IAE
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAE 335

Query: 274 LLHFKISTV--LLHGG--KLKEAITWF------HQHNASYKKL------VGAPEVVF-LH 316
            +   ++T     H    KL   I          ++   + +L         P ++  L 
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395

Query: 317 WEWLSRQ--FLVFAELLDTSSVPAQ------SISSLVLATADRPLTESEFHPS------- 361
           W  + +    +V  +L   S V  Q      SI S+ L    +   E   H S       
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 362 ----------------YYYQLAAHYLKEKRSSLEIALSMSESASELDSSADSVAPSVYIG 405
                           Y+Y    H+LK             E  +            V+  
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIE--------HPERMTLF--------RMVF-- 497

Query: 406 QFD-RLLEQ----GDTVSKQP------LTD-EDYTRYVI-AEGKRFQDTYEILGLLKKSC 452
             D R LEQ      T           L   + Y  Y+   + K  +    IL  L K  
Sbjct: 498 -LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556

Query: 453 ESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQ 497
           E+    K   +      ++A+           + +F+     ++Q
Sbjct: 557 ENLICSKYTDL-----LRIAL-------MAEDEAIFE---EAHKQ 586

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1193
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.48
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	97.38
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	97.32
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	97.26
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	97.18
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	96.99
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	96.84
3hrz_B		252	Cobra venom factor; serine protease, glycosilated,	96.81
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	96.76
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	96.61
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	96.39
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	96.25
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	96.06
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	96.01
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	95.66
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	95.46
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	95.28
3es6_B		118	Prolactin-inducible protein; major histocompatibil	94.94
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	94.55
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	94.33
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	94.08
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	94.03
2hr0_B		915	Complement C3 alpha' chain; complement component C	93.88
2xzz_A		102	Protein-glutamine gamma-glutamyltransferase K; 2.3	93.74
3cv0_A		327	Peroxisome targeting signal 1 receptor PEX5; TPR m	93.59
3prx_B		1642	Cobra venom factor; immune system, complement, imm	93.43
4fxk_B		767	Complement C4-A alpha chain; immune system, proteo	93.33
2b39_A		1661	C3; thioester, immune defense, immune system; HET:	92.93
4acq_A		1451	Alpha-2-macroglobulin; hydrolase inhibitor, protei	92.79
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	92.45
2yhc_A		225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	92.35
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	92.23
1hz4_A		373	MALT regulatory protein; two-helix bundles, helix	91.53
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	91.43
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	91.28
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	91.25
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	91.07
2qfc_A		293	PLCR protein; TPR, HTH, transcription regulation;	90.98
4ga2_A		150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	90.82
2xev_A		129	YBGF; tetratricopeptide, alpha-helical, metal bind	90.77
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	90.71
2v5f_A		104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	90.62
1g0d_A		695	Protein-glutamine gamma-glutamyltransferase; tissu	90.46
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	90.37
2pn5_A		1325	TEP1R, thioester-containing protein I; FULL-length	90.27
1fch_A		368	Peroxisomal targeting signal 1 receptor; protein-p	89.5
3k9i_A		117	BH0479 protein; putative protein binding protein,	89.34
2icn_B		118	Prolactin-inducible protein; beta-pleated sheet, c	88.65
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	88.06
1elr_A		131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	87.7
2qfc_A		293	PLCR protein; TPR, HTH, transcription regulation;	87.47
3cu7_A		1676	Complement C5; Mg domain, inflammation, anaphylato	87.41
3u4t_A		272	TPR repeat-containing protein; structural genomics	87.23
2xpi_A		597	Anaphase-promoting complex subunit CUT9; cell cycl	87.21
3idu_A		127	Uncharacterized protein; all beta-protein, structu	87.12
2gw1_A		514	Mitochondrial precursor proteins import receptor;	87.03
4eqf_A		365	PEX5-related protein; accessory protein, tetratric	86.09
1hz4_A		373	MALT regulatory protein; two-helix bundles, helix	85.78
3ieg_A		359	DNAJ homolog subfamily C member 3; TPR motif, chap	85.59
2gw1_A		514	Mitochondrial precursor proteins import receptor;	85.06
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	84.4
2y4t_A		450	DNAJ homolog subfamily C member 3; chaperone, endo	84.35
1ex0_A		731	Coagulation factor XIII A chain; transglutaminase,	84.28
1vjj_A		692	Protein-glutamine glutamyltransferase E; transglut	84.09
2kck_A		112	TPR repeat; tetratricopeptide repeat, structural g	84.06
4abn_A		474	Tetratricopeptide repeat protein 5; P53 cofactor,	83.79
4gcn_A		127	Protein STI-1; structural genomics, PSI-biology, m	83.68
2l6j_A		111	TPR repeat-containing protein associated with HSP;	83.55
1elw_A		118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	83.54
1vjj_A		692	Protein-glutamine glutamyltransferase E; transglut	83.52
2lni_A		133	Stress-induced-phosphoprotein 1; structural genomi	83.43
4gcn_A		127	Protein STI-1; structural genomics, PSI-biology, m	83.05
3sz7_A		164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	82.78
2kat_A		115	Uncharacterized protein; NESG, structure, structur	82.62
2l6j_A		111	TPR repeat-containing protein associated with HSP;	82.41
3rkv_A		162	Putative peptidylprolyl isomerase; structural geno	82.38
2dba_A		148	Smooth muscle cell associated protein-1, isoform 2	82.34
2vyi_A		131	SGTA protein; chaperone, TPR repeat, phosphoprotei	82.32
3ma5_A		100	Tetratricopeptide repeat domain protein; NESG, str	82.22
3q49_B		137	STIP1 homology and U box-containing protein 1; E3	82.14
4gco_A		126	Protein STI-1; structural genomics, PSI-biology, m	81.93
3upv_A		126	Heat shock protein STI1; TPR-fold, adaptor protein	81.63
2rpa_A		78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	81.23
3fp2_A		537	TPR repeat-containing protein YHR117W; TOM71, mito	81.06
1na0_A		125	Designed protein CTPR3; de novo protein; HET: IPT;	80.75
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	80.63
4gco_A		126	Protein STI-1; structural genomics, PSI-biology, m	80.04

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

Probab=97.48  E-value=0.013  Score=67.29  Aligned_cols=95  Identities=13%  Similarity=0.039  Sum_probs=78.5

Q ss_pred             cHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Q 040980          440 DTYEILGLLKKSCESYGNHKARRMGSFCGFQMAVEYFALDDFNNAKQLFDGVANQYRQEGWVTLLWEVLGYLRECSRKQG  519 (1193)
Q Consensus       440 hs~~ii~LL~kA~~~f~~~~~~R~~~~l~~~lA~ey~~~gd~~~Al~~l~~~~~~Yr~egW~~L~~~~L~~l~~Ca~~l~  519 (1193)
                      .-...+..+.+|++.+...+.......+...+|..|...|++++|+.+|+++...+...+-......++..+..|+..+|
T Consensus       278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  357 (411)
T 4a1s_A          278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG  357 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence            35777888888888888877777788888888888888888888888888888888888888888888888888888888


Q ss_pred             ChhHHHHHHHHHccC
Q 040980          520 IVRDFVEYSLEMAAL  534 (1193)
Q Consensus       520 ~~~~~v~~~leLls~  534 (1193)
                      +.++-+.+.-+.+.+
T Consensus       358 ~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          358 GHERALKYAEQHLQL  372 (411)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            888888877777754

PyMOL of 4a1s

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>3hrz_B Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_G* 3hs0_B*	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

>3es6_B Prolactin-inducible protein; major histocompatibility complex, protein-protein complex, P inducible protein, zinc 2-glycoprotein, ZAG-PIP complex; HET: NDG NAG BMA MAN P6G; 3.23A {Homo sapiens} SCOP: b.1.18.23	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ...	Back alignment and structure

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}	Back alignment and structure

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A	Back alignment and structure

>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B*	Back alignment and structure

>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B*	Back alignment and structure

>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}	Back alignment and structure

>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}	Back alignment and structure

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*	Back alignment and structure

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A	Back alignment and structure

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}	Back alignment and structure

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A	Back alignment and structure

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A	Back alignment and structure

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}	Back alignment and structure

>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A	Back alignment and structure

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}	Back alignment and structure

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}	Back alignment and structure

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}	Back alignment and structure

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2	Back alignment and structure

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}	Back alignment and structure

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A	Back alignment and structure

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A	Back alignment and structure

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*	Back alignment and structure

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}	Back alignment and structure

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}	Back alignment and structure

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}	Back alignment and structure

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1	Back alignment and structure

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*	Back alignment and structure

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}	Back alignment and structure

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}	Back alignment and structure

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}	Back alignment and structure

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}	Back alignment and structure

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}	Back alignment and structure

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1	Back alignment and structure

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A	Back alignment and structure

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*	Back alignment and structure

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}	Back alignment and structure

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}	Back alignment and structure

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}	Back alignment and structure

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A	Back alignment and structure

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1193
d3es6b1		118	Prolactin-inducible protein, PIP {Human (Homo sapi	96.14
d1ex0a3		100	Transglutaminase, two C-terminal domains {Human (H	94.37
d1vjja3		99	Transglutaminase, two C-terminal domains {Human (H	93.95
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	93.79
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	93.5
d1g0da3		101	Transglutaminase, two C-terminal domains {Red sea	92.47
d2q3za3		98	Transglutaminase, two C-terminal domains {Human (H	91.98
d1vjja2		115	Transglutaminase, two C-terminal domains {Human (H	91.23
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	90.91
d1tjca_		95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	90.32
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	89.41
d2q3za2		114	Transglutaminase, two C-terminal domains {Human (H	89.25
d1ex0a2		112	Transglutaminase, two C-terminal domains {Human (H	89.24
d1g0da2		112	Transglutaminase, two C-terminal domains {Red sea	87.91
d1vjja3		99	Transglutaminase, two C-terminal domains {Human (H	86.21
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	82.83
d1fcha_		323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	82.3
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	82.19
d1p5qa1		170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	80.42
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	80.21

>d3es6b1 b.1.18.23 (B:1-118) Prolactin-inducible protein, PIP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: SVA-like
domain: Prolactin-inducible protein, PIP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.004  Score=57.72  Aligned_cols=73  Identities=8%  Similarity=0.020  Sum_probs=66.7

Q ss_pred             CCeEEEeecCCceeeCCeEEEEEEEEcCCCceEEEEEEEEeCCCeEEeccCCCcEEeCCCCeEEEEEEEEECc
Q 040980         1066 SPLVVSLECPPYAVLGEPFTYTIKIWNQTKLLQEVKFCVADAQSFVLSGVHNDTVFVLPKSKHILCYKVVPLG 1138 (1193)
Q Consensus      1066 ~pl~v~~~~P~~~~vg~p~~~~~~I~N~T~~~~~l~l~le~s~~F~fsG~k~~~l~llP~s~~~~~~~l~PL~ 1138 (1193)
                      .+|.+.+++|-.++-|+-+.++..|.|....-+.+.++|+.++.|-..+..+.++.|-+++.+.+.|.+.|+.
T Consensus         6 k~~~~~l~lP~sv~rge~~~i~~~V~Nyl~~~~~v~v~L~~s~~~~~~~~~~~~~cv~~~~~~t~~w~i~~~g   78 (118)
T d3es6b1           6 KIIIKNFDIPKSVRPNDEVTAVLAVQTELKECMVVKTYLISSIPLQGAFNYKYTACLCDDNPKTFYWDFYTNR   78 (118)
T ss_dssp             CCCEECCCCCSEECSSCCEEEEEEEEECCSSCEEEEEEEEESSCCCSGGGCEEEEEECSSSCEEEEEEECCSS
T ss_pred             eeEEEEcCCCceEecCCEEEEEEEEEECccceEEEEEEEecCCCEEccCCCCcceEECCCCceEEEEEEEecC
Confidence            5788889999999999999999999999999999999999999987766666788999999999999999973

PyMOL of d3es6b1

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}	Back information, alignment and structure

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1vjja2 b.1.5.1 (A:479-593) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d2q3za2 b.1.5.1 (A:472-585) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1ex0a2 b.1.5.1 (A:516-627) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1g0da2 b.1.5.1 (A:472-583) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}	Back information, alignment and structure

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure