Citrus Sinensis ID: 040986

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
MGTNSSYNTKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVHEENHSNQKSL
cccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccEEEEccccccEEEEEEccccccccccccccEEccccEEEEEEEccEEEEEEEEEccccHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccccccEEEEEccEEEEEEEccccEEEEcccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEEcccccEEEEEEEEEcccccEEccccccccEEEEEEccccccHHHHHccccccEEEccccccEEEEEEccccccccEEEEEEccEEEEEEcccccccccEEEEEEEcccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccccccccccEEEEEEccccccccEEEEEEcccccEEEEEEccccccccccEEEEcccccccccccccEEEEEEEEEccccEEEEEEEEccccccccEEEEEccccccccccccccccccccccccc
ccccccccHHHHHHHHHHHcccccccccccccEEcccccccccccccccccEEEEcccccccEEEEccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccEEEEEEcccEEEEEcccccEEEEEcccccEEEccEEcccccccccEEcccccccccccEEEEEcccccccEEEEEEEcccccEcccccccccccccEEEcEEEcccEEEEccccEEEcHHHHHcccccEEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEcccccccEEEEEEcccccHHHHHHcHHHccccEEEEEEEcccccEEEEEccccccccccccHcHcccccEEEEEEEccccccccEEEEEEcccccEEEEEEEcccccccccEEEcccccccccccccccEEEEEEEEcccccEEEEEEEccccccccEEEEEccccccccccEEEccHHHHHHHHcc
mgtnssyntksapslftniidrplhpsvdpkhvftgnfapvdelgptecpvvdgklpdsltgmyirngpnpqhmprgplhffegdgmlHSMQLSKGRAIYTSRYVKTYKYKLerdaggqifpnvfsgFYGLVDMVQCVASTARVLMGHVnlkkgfglantSLAFFSSKLLalgesdlpyiinctregdietlgrwdFDEELFASmtahpktdmttketfafkfspffsphltfsrfdangvkqkdvpilsinrptfihdfAITKRFAIFSETQLAVSAANVMlgkgmptvfdpekvprIGIILKYAtsdaemkwfnvpgfnAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSRNILSARNlelgsinssyigkknryvFVGVgkeipkmqgvvkIDLEKEIEVSrrfygpgcfggeplfvprngdhvdaadeddgfVVTYIhdenygeskflvmdakspnldivaavklprrvpygfhglfvheenhsnqksl
mgtnssyntksapSLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMptvfdpekvprIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVrinlrtgnvsrnilsarnlelgsinssyigkknrYVFVGvgkeipkmqgvvKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLfvheenhsnqksl
MGTNSSYNTKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTslaffsskllalGESDLPYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVHEENHSNQKSL
***************FTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIR************LHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVH**********
***************FTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDH*DAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVHEENHS*****
**********SAPSLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVHEE********
******YNTKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVHEENHSN****
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGTNSSYNTKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISLEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVPYGFHGLFVHEENHSNQKSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query514 2.2.26 [Sep-21-2011]
O49675595 Probable carotenoid cleav yes no 0.961 0.830 0.568 1e-162
Q9C6Z1589 Probable 9-cis-epoxycarot no no 0.937 0.818 0.393 1e-103
Q84K96369 Zeaxanthin 7,8(7',8')-cle N/A no 0.702 0.978 0.510 1e-103
O49505583 9-cis-epoxycarotenoid dio no no 0.957 0.843 0.375 8e-97
Q9M6E8615 9-cis-epoxycarotenoid dio N/A no 0.947 0.791 0.373 1e-94
Q9LRR7599 9-cis-epoxycarotenoid dio no no 0.931 0.799 0.383 2e-94
Q9LRM7577 9-cis-epoxycarotenoid dio no no 0.926 0.824 0.369 2e-94
Q9M9F5657 9-cis-epoxycarotenoid dio no no 0.935 0.732 0.375 2e-94
O24592604 9-cis-epoxycarotenoid dio N/A no 0.957 0.814 0.371 2e-93
O65572538 Carotenoid 9,10(9',10')-c no no 0.937 0.895 0.383 4e-92
>sp|O49675|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1 Back     alignment and function desciption
 Score =  572 bits (1473), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/512 (56%), Positives = 368/512 (71%), Gaps = 18/512 (3%)

Query: 12  APSLFTNI-------IDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGM 63
           A +LFT +       ID P  PSVDPKHV + NFAPV DEL PT+C ++ G LP SL G 
Sbjct: 82  ATALFTTVEDVINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGA 141

Query: 64  YIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPN 123
           YIRNGPNPQ +PRGP H F+GDGMLH++++  G+A   SRYVKTYKY +E+  G  + PN
Sbjct: 142 YIRNGPNPQFLPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPN 201

Query: 124 VFSGFYGLVDMVQCVAST-ARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIIN 182
           VFSGF G+   V   A T ARVL G  N   G GLANTSLAFFS++L ALGESDLPY + 
Sbjct: 202 VFSGFNGVTASVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVR 261

Query: 183 CTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVK 242
            T  GDIET+GR+DFD +L  SMTAHPKTD  T ETFAF++ P   P LT+ RFD+ G K
Sbjct: 262 LTESGDIETIGRYDFDGKLAMSMTAHPKTDPITGETFAFRYGP-VPPFLTYFRFDSAGKK 320

Query: 243 QKDVPILSINRPTFIHDFAITKRFAIFSETQLA--VSAANVMLGKGMPTVFDPEKVPRIG 300
           Q+DVPI S+  P+F+HDFAITKR AIF+E QL   ++  +++L  G P   D  K PR+G
Sbjct: 321 QRDVPIFSMTSPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLG 380

Query: 301 IILKYATSDAEMKWFNVPGFNAMHVFNAW-ENGEDEVVLIATNATSIENLFLKVDMVHIS 359
           +I KYA  ++EMKWF VPGFN +H  NAW E+  + VVLIA N  SIE+   ++D+VH  
Sbjct: 381 VIPKYAGDESEMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLERMDLVHAL 440

Query: 360 LEKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLE 419
           +EKV+I+L TG V R+ +SARNL+   IN +++G+ +RYV+  +G  +PK+ GVVK+D+ 
Sbjct: 441 VEKVKIDLVTGIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVS 500

Query: 420 K----EIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVM 475
           K    +  V+RR YG GC+GGEP FV R+  + + A+EDDG+VVTY+HDE  GESKFLVM
Sbjct: 501 KGDRDDCTVARRMYGSGCYGGEPFFVARDPGNPE-AEEDDGYVVTYVHDEVTGESKFLVM 559

Query: 476 DAKSPNLDIVAAVKLPRRVPYGFHGLFVHEEN 507
           DAKSP L+IVAAV+LPRRVPYGFHGLFV E +
Sbjct: 560 DAKSPELEIVAAVRLPRRVPYGFHGLFVKESD 591
May be involved in carotenoid cleavage.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 9EC: 9EC: .EC: -
>sp|Q9C6Z1|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1 Back     alignment and function description
>sp|Q84K96|ZCD_CROSA Zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplast OS=Crocus sativus GN=ZCD PE=1 SV=1 Back     alignment and function description
>sp|O49505|NCED2_ARATH 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1 Back     alignment and function description
>sp|Q9M6E8|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRR7|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRM7|NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9F5|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1 Back     alignment and function description
>sp|O24592|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2 Back     alignment and function description
>sp|O65572|CCD1_ARATH Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
83628264560 carotenoid cleavage dioxygenase 4b [Citr 1.0 0.917 0.994 0.0
224102979594 predicted protein [Populus trichocarpa] 0.949 0.821 0.699 0.0
224143680584 predicted protein [Populus trichocarpa] 0.949 0.835 0.699 0.0
224102977585 predicted protein [Populus trichocarpa] 0.949 0.834 0.697 0.0
224102975526 predicted protein [Populus trichocarpa] 0.949 0.927 0.687 0.0
359489962582 PREDICTED: probable carotenoid cleavage 0.935 0.826 0.629 0.0
297737258562 unnamed protein product [Vitis vinifera] 0.889 0.813 0.611 1e-175
255557829 618 9-cis-epoxycarotenoid dioxygenase, putat 0.953 0.792 0.580 1e-171
224083508507 predicted protein [Populus trichocarpa] 0.959 0.972 0.572 1e-170
224146522589 predicted protein [Populus trichocarpa] 0.953 0.831 0.574 1e-169
>gi|83628264|gb|ABC26012.1| carotenoid cleavage dioxygenase 4b [Citrus clementina] Back     alignment and taxonomy information
 Score = 1058 bits (2735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/514 (99%), Positives = 512/514 (99%)

Query: 1   MGTNSSYNTKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSL 60
           MGTNSSYNTKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSL
Sbjct: 47  MGTNSSYNTKSAPSLFTNIIDRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSL 106

Query: 61  TGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQI 120
           TG YIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIY+SRYVKTYKYKLERDAGGQI
Sbjct: 107 TGTYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIYSSRYVKTYKYKLERDAGGQI 166

Query: 121 FPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYI 180
           FPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYI
Sbjct: 167 FPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYI 226

Query: 181 INCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANG 240
           I CTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANG
Sbjct: 227 IKCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANG 286

Query: 241 VKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIG 300
           VKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIG
Sbjct: 287 VKQKDVPILSINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIG 346

Query: 301 IILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISL 360
           IILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISL
Sbjct: 347 IILKYATSDAEMKWFNVPGFNAMHVFNAWENGEDEVVLIATNATSIENLFLKVDMVHISL 406

Query: 361 EKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEK 420
           EKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEK
Sbjct: 407 EKVRINLRTGNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEK 466

Query: 421 EIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSP 480
           EIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSP
Sbjct: 467 EIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSP 526

Query: 481 NLDIVAAVKLPRRVPYGFHGLFVHEENHSNQKSL 514
           NLDIVAAVKLPRRVPYGFHGLFVHEENHSNQKSL
Sbjct: 527 NLDIVAAVKLPRRVPYGFHGLFVHEENHSNQKSL 560

Source: Citrus clementina

Species: Citrus clementina

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102979|ref|XP_002312878.1| predicted protein [Populus trichocarpa] gi|222849286|gb|EEE86833.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224143680|ref|XP_002336069.1| predicted protein [Populus trichocarpa] gi|222869885|gb|EEF07016.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102977|ref|XP_002312877.1| predicted protein [Populus trichocarpa] gi|222849285|gb|EEE86832.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224102975|ref|XP_002312876.1| predicted protein [Populus trichocarpa] gi|222849284|gb|EEE86831.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359489962|ref|XP_002269538.2| PREDICTED: probable carotenoid cleavage dioxygenase 4, chloroplastic-like [Vitis vinifera] gi|147797202|emb|CAN64863.1| hypothetical protein VITISV_042539 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297737258|emb|CBI26459.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255557829|ref|XP_002519944.1| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] gi|223540990|gb|EEF42548.1| 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224083508|ref|XP_002307055.1| predicted protein [Populus trichocarpa] gi|222856504|gb|EEE94051.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224146522|ref|XP_002326037.1| predicted protein [Populus trichocarpa] gi|222862912|gb|EEF00419.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
TAIR|locus:2134796595 NCED4 "nine-cis-epoxycarotenoi 0.955 0.825 0.551 1.1e-144
TAIR|locus:2202492589 NCED5 "nine-cis-epoxycarotenoi 0.937 0.818 0.385 3e-94
TAIR|locus:2091652599 NCED3 "nine-cis-epoxycarotenoi 0.928 0.796 0.379 2.5e-90
TAIR|locus:2124489583 NCED2 "nine-cis-epoxycarotenoi 0.941 0.830 0.369 2.5e-88
TAIR|locus:2032085657 NCED9 "nine-cis-epoxycarotenoi 0.928 0.726 0.369 2.9e-87
TAIR|locus:2093751577 NCED6 "nine-cis-epoxycarotenoi 0.935 0.833 0.357 1.1e-85
TAIR|locus:2087418538 CCD1 "carotenoid cleavage diox 0.943 0.901 0.369 1e-82
UNIPROTKB|O06785501 MT0683 "Carotenoid cleavage ox 0.402 0.413 0.257 2.3e-27
UNIPROTKB|Q83CU2394 CBU_1011 "Lignostilbene-alpha, 0.581 0.758 0.285 3.7e-21
TIGR_CMR|CBU_1011394 CBU_1011 "dioxygenase, putativ 0.581 0.758 0.285 3.7e-21
TAIR|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1414 (502.8 bits), Expect = 1.1e-144, P = 1.1e-144
 Identities = 277/502 (55%), Positives = 352/502 (70%)

Query:    15 LFTNIIDRPLHPSVDPKHVFTGNFAPV-DELGPTECPVVDGKLPDSLTGMYIRNGPNPQH 73
             +    ID P  PSVDPKHV + NFAPV DEL PT+C ++ G LP SL G YIRNGPNPQ 
Sbjct:    92 VINTFIDPPSRPSVDPKHVLSDNFAPVLDELPPTDCEIIHGTLPLSLNGAYIRNGPNPQF 151

Query:    74 MPRGPLHFFEGDGMLHSMQLSKGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVD 133
             +PRGP H F+GDGMLH++++  G+A   SRYVKTYKY +E+  G  + PNVFSGF G+  
Sbjct:   152 LPRGPYHLFDGDGMLHAIKIHNGKATLCSRYVKTYKYNVEKQTGAPVMPNVFSGFNGVTA 211

Query:   134 MVQCVASTA-RVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIINCTREGDIETL 192
              V   A TA RVL G  N   G GLANT            GESDLPY +  T  GDIET+
Sbjct:   212 SVARGALTAARVLTGQYNPVNGIGLANTSLAFFSNRLFALGESDLPYAVRLTESGDIETI 271

Query:   193 GRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSIN 252
             GR+DFD +L  SMTAHPKTD  T ETFAF++ P   P LT+ RFD+ G KQ+DVPI S+ 
Sbjct:   272 GRYDFDGKLAMSMTAHPKTDPITGETFAFRYGPV-PPFLTYFRFDSAGKKQRDVPIFSMT 330

Query:   253 RPTFIHDFAITKRFAIFSETQLAV--SAANVMLGKGMPTVFDPEKVPRIGIILKYATSDA 310
              P+F+HDFAITKR AIF+E QL +  +  +++L  G P   D  K PR+G+I KYA  ++
Sbjct:   331 SPSFLHDFAITKRHAIFAEIQLGMRMNMLDLVLEGGSPVGTDNGKTPRLGVIPKYAGDES 390

Query:   311 EMKWFNVPGFNAMHVFNAWENGE-DEVVLIATNATSIENLFLKVDMVHISLEKVRINLRT 369
             EMKWF VPGFN +H  NAW+  + + VVLIA N  SIE+   ++D+VH  +EKV+I+L T
Sbjct:   391 EMKWFEVPGFNIIHAINAWDEDDGNSVVLIAPNIMSIEHTLERMDLVHALVEKVKIDLVT 450

Query:   370 GNVSRNILSARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEK----EIEVS 425
             G V R+ +SARNL+   IN +++G+ +RYV+  +G  +PK+ GVVK+D+ K    +  V+
Sbjct:   451 GIVRRHPISARNLDFAVINPAFLGRCSRYVYAAIGDPMPKISGVVKLDVSKGDRDDCTVA 510

Query:   426 RRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIV 485
             RR YG GC+GGEP FV R+  + +A +EDDG+VVTY+HDE  GESKFLVMDAKSP L+IV
Sbjct:   511 RRMYGSGCYGGEPFFVARDPGNPEA-EEDDGYVVTYVHDEVTGESKFLVMDAKSPELEIV 569

Query:   486 AAVKLPRRVPYGFHGLFVHEEN 507
             AAV+LPRRVPYGFHGLFV E +
Sbjct:   570 AAVRLPRRVPYGFHGLFVKESD 591
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0010287 "plastoglobule" evidence=IDA
GO:0009718 "anthocyanin-containing compound biosynthetic process" evidence=RCA
TAIR|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O06785 MT0683 "Carotenoid cleavage oxygenase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q83CU2 CBU_1011 "Lignostilbene-alpha,beta-dioxygenase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1011 CBU_1011 "dioxygenase, putative" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49675CCD4_ARATH1, ., 1, 4, ., 9, 9, ., -0.56830.96100.8302yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.990.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.IX.617.1
hypothetical protein (497 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00010285
xanthoxin dehydrogenase (EC-1.1.1.288) (281 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
pfam03055469 pfam03055, RPE65, Retinal pigment epithelial membr 1e-156
PLN02258590 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen 1e-154
PLN02491545 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava 1e-116
COG3670490 COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge 2e-86
PLN02969610 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen 1e-14
PLN02969610 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen 2e-04
>gnl|CDD|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein Back     alignment and domain information 
 Score =  452 bits (1165), Expect = e-156
 Identities = 180/489 (36%), Positives = 258/489 (52%), Gaps = 42/489 (8%)

Query: 37  NFAPV-DELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPL-HFFEGDGMLHSMQLS 94
           NFAPV +EL   E   V+G++P  L G   RNGP P         H+F+GDGMLH+ +  
Sbjct: 1   NFAPVREELPDAEDLEVEGEIPADLNGTLYRNGPGPLERGGFRYHHWFDGDGMLHAFRFE 60

Query: 95  KGRAIYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKG 154
            GR  Y +R+V+T  YK ER AG +++P  F                    +      K 
Sbjct: 61  DGRVTYRNRFVRTEGYKAERAAGRRLYPGEFGTL----------KPDPCKNIFPRVPGKL 110

Query: 155 FGLANTSLAFFSSKLLALGESDLPYIINCTREGDIETLGRWDFDEELFAS--MTAHPKTD 212
             +ANT++ +   +LLAL E+ LPY ++      +ETLGR+DF  +L      TAHPK D
Sbjct: 111 KNVANTNVVYHGGRLLALWEAGLPYRLDP---ETLETLGRYDFGGKLKPGPPFTAHPKVD 167

Query: 213 MTTKETFAFKFSPFF-SPHLTFSRFDANGVKQKDVPILSINRPTFIHDFAITKRFAIFSE 271
             T E   F  S     P+LT+   DA+G   ++VPI S+  P+ IHDFAIT+ + IF +
Sbjct: 168 PVTGELVNFGLSLGPKPPYLTYYEVDADGKLVREVPIFSLPGPSMIHDFAITENYVIFPD 227

Query: 272 TQLAVSAANVMLGKGMPTV-FDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWE 330
             L      ++LG     + +DPEK  R G+I +     ++++WF  P     H  NAWE
Sbjct: 228 LPLVFDPLRLLLGGRADPLRWDPEKPTRFGVIPRR-GGKSDVRWFEAPPCFVFHTANAWE 286

Query: 331 NGEDEVVLIA---TNATSIENLFLKV--------DMVHISLEKVRINLRTGN-VSRNILS 378
            G  E+VL A    +   ++  +L                L + R++L+TG  V+  +L 
Sbjct: 287 EG-GEIVLDACRYDDPDFLDPFYLDNLRPDAFADKKPRSRLTRWRLDLKTGGDVTEEVLL 345

Query: 379 ARNLELGSINSSYIGKKNRYVFVGV----GKEIPKMQGVVKIDLEKEIEVSRRFYGPGCF 434
            R  E   IN  Y+G+K RYV++              G+VK+DLE   EV    +GPGC+
Sbjct: 346 DRPCEFPRINPRYVGRKYRYVYMAAADPRPPGSGPFDGLVKVDLETG-EVQVWSFGPGCY 404

Query: 435 GGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRV 494
            GEP+FVPR G    AADEDDG++++ ++DE+ G S+ L++DAK      VA V+LP RV
Sbjct: 405 PGEPIFVPRPG----AADEDDGWLLSVVYDEDTGRSELLILDAKDLTEGPVARVELPHRV 460

Query: 495 PYGFHGLFV 503
           PYGFHG +V
Sbjct: 461 PYGFHGTWV 469

This family represents a retinal pigment epithelial membrane receptor which is abundantly expressed in retinal pigment epithelium, and binds plasma retinal binding protein. The family also includes the sequence related neoxanthin cleavage enzyme in plants and lignostilbene-alpha,beta-dioxygenase in bacteria. Length = 469
>gnl|CDD|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information
>gnl|CDD|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information
>gnl|CDD|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 514
PLN02258590 9-cis-epoxycarotenoid dioxygenase NCED 100.0
PLN02491545 carotenoid 9,10(9',10')-cleavage dioxygenase 100.0
COG3670490 Lignostilbene-alpha,beta-dioxygenase and related e 100.0
PF03055486 RPE65: Retinal pigment epithelial membrane protein 100.0
PLN02969610 9-cis-epoxycarotenoid dioxygenase 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 100.0
KOG1285582 consensus Beta, beta-carotene 15,15'-dioxygenase a 100.0
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED Back     alignment and domain information 
Probab=100.00  E-value=2.2e-126  Score=1031.46  Aligned_cols=483  Identities=39%  Similarity=0.748  Sum_probs=436.5

Q ss_pred             cCCCCCCCCCCCcccCCCccccccCCCCCCeeeecCCCCCceEEEeecCCCCCCCCCCCccccCCCcEEEEEEecCeEEE
Q 040986           21 DRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRAIY  100 (514)
Q Consensus        21 ~~~~~~~~~~~~~l~g~~~p~~e~~~~~~~~v~G~iP~~L~Gtl~RnGP~~~~~~~~~~H~FDGdGmv~~~~f~~G~v~y  100 (514)
                      ..+++.+.+|+++++|+|+|+.||.+..+++|+|+||+||+|||||||||+++.+.+.+||||||||||+|+|+||+|+|
T Consensus       102 ~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p~~~~H~FDGDGMvhav~f~dG~a~y  181 (590)
T PLN02258        102 QHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSASY  181 (590)
T ss_pred             cCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCCCCCCccccCCceEEEEEECCCeEEE
Confidence            35678889999999999999999998889999999999999999999999988777789999999999999999999999


Q ss_pred             EEEeecchhhHHHHhcCCcCCCCcccccCCcchhhhhhhhhhhhhhcccCCCCCcccceeEEEEeCCeEEEEeeCCCCeE
Q 040986          101 TSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYI  180 (514)
Q Consensus       101 ~~R~vrT~~~~~e~~ag~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~grllAl~E~g~P~~  180 (514)
                      +||||||++|++|+++||.+|++.+++..+..++.|..+...+...+..+..+.+|+|||||++|+||||||||+|.||+
T Consensus       182 ~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~Py~  261 (590)
T PLN02258        182 ACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQ  261 (590)
T ss_pred             EeeeecchhHHHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCceE
Confidence            99999999999999999999997677766555666665555554444444444579999999999999999999999999


Q ss_pred             EecCCCCCcceeeeccCCccccccCCCCceecCCCCeEEEEEecCCCCCeEEEEEEcCCCCeeeeEeeeecCCcceeeee
Q 040986          181 INCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHDF  260 (514)
Q Consensus       181 ld~~~~~TLeT~g~~~~~~~l~~~~tAHPk~Dp~tG~l~~f~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHdf  260 (514)
                      ||++++.||||+|.+||+|+|...||||||+||.||||++|+|+....|+++|+++|++|++.+.+++ +++.++|||||
T Consensus       262 l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i-~lp~p~~~HDF  340 (590)
T PLN02258        262 VRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEI-PLDQPTMMHDF  340 (590)
T ss_pred             ecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEe-eCCCCccccce
Confidence            99876669999999999999988899999999999999999999766799999999999999998888 99999999999


Q ss_pred             eecCCEEEEEeCccccchhHHHhCCCCceEEcCCCCcEEEEEeCCCCCCCceEEEecCCeeeeeecceeeeC-CCeEEEE
Q 040986          261 AITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENG-EDEVVLI  339 (514)
Q Consensus       261 aiTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~~H~~NAyE~~-~g~Ivvd  339 (514)
                      +|||||+||+++|+.+|+.+++ .+++++.|+|++++||+||||++++.++++||++|+||+||++||||++ +++||+|
T Consensus       341 aiTenY~Vf~d~Pl~~~~~~~~-~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd  419 (590)
T PLN02258        341 AITENFVVIPDQQVVFKLSEMI-RGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVI  419 (590)
T ss_pred             eccCceEEEEccCceEcHHHHh-hCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEE
Confidence            9999999999999999999987 5568899999999999999999765568999999999999999999973 4689999


Q ss_pred             EEecCCchhhhhhc-ccccceEEEEEEeCCCCceEEEeecc---CCccccccCCCCCCCCCceEEEeecccCCCCCeEEE
Q 040986          340 ATNATSIENLFLKV-DMVHISLEKVRINLRTGNVSRNILSA---RNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVK  415 (514)
Q Consensus       340 ~~~~~~~~~~~~~~-~~~~~~l~R~~idl~tg~v~~~~l~~---~~~EfP~In~~~~gr~yry~Y~~~~~~~~~~~~l~k  415 (514)
                      +|++.+.+..+... +..+++|+|||||+++|+++++.+.+   .++|||+||++|.||+|||+|+++.+++..+++|+|
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~givK  499 (590)
T PLN02258        420 GSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISGEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAK  499 (590)
T ss_pred             EecccChhhhcccccccccceEEEEEEECCCCceeeeEeecCCCcccccceECHHHCCCccceEEEeccCCCCCCCeEEE
Confidence            99998766444332 35678999999999999998888765   799999999999999999999988777778999999


Q ss_pred             EeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCceeEEEEcCCcCC
Q 040986          416 IDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRRVP  495 (514)
Q Consensus       416 ~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~~LP~~vP  495 (514)
                      +|+++|+ ++.||+|+++|++||+||||++++   .+|||||||++|+|.++++|+|+||||++|  .+|||++||++||
T Consensus       500 ~Dl~tg~-~~~~~~g~g~~~gEPvFVPr~~~~---~~EDDGylls~V~d~~~~~SeL~IlDA~~l--~~VArv~LP~rVP  573 (590)
T PLN02258        500 VDLSTGE-VKKYIYGEGRYGGEPFFVPRGSGS---EAEDDGYILAFVHDEEKGKSELQVVNAVNL--ELEATVKLPSRVP  573 (590)
T ss_pred             EECCCCc-EEEEECCCCccccCCEeccCCCCC---cccCCcEEEEEEEECCCCceEEEEEeCCCC--cccEEEECCCCCC
Confidence            9999998 889999999999999999999752   359999999999999999999999999998  4799999999999


Q ss_pred             CCcCccccCCcccccc
Q 040986          496 YGFHGLFVHEENHSNQ  511 (514)
Q Consensus       496 ~GfHG~w~~~~~~~~~  511 (514)
                      +||||+|+++++|..|
T Consensus       574 ~GFHG~wv~~~~l~~q  589 (590)
T PLN02258        574 YGFHGTFISAEDLLKQ  589 (590)
T ss_pred             CcccccccCHHHHhhc
Confidence            9999999999999877

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase Back     alignment and domain information
>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection Back     alignment and domain information
>PLN02969 9-cis-epoxycarotenoid dioxygenase Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
3npe_A529 Structure Of Vp14 In Complex With Oxygen Length = 5 2e-88
2biw_A490 Crystal Structure Of Apocarotenoid Cleavage Oxygena 1e-29
3fsn_A533 Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut 8e-11
>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529 Back     alignment and structure 
Iteration: 1

 Score =  323 bits (827), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 183/506 (36%), Positives = 273/506 (53%), Gaps = 14/506 (2%)
Query: 17  TNIIDRP--LHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHM 74
            N+++RP  L  + DP     GNFAPV E  P     V G++P  + G+Y RNG NP   
Sbjct: 29  ANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFD 88
Query: 75  PRGPLHFFEGDGMLHSMQLSKGRA-IYTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVD 133
           P    H F+GDGM+H++++  G A  Y  R+ +T + + ER  G  +FP      +G   
Sbjct: 89  PVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSG 148
Query: 134 MVQCVASTARVLMGHVNLKKGFGLANTXXXXXXXXXXXXGESDLPYIINCTREGDIETLG 193
           + +     AR   G V+   G G+AN              E DLPY +    +GD+ET+G
Sbjct: 149 IARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVG 208
Query: 194 RWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINR 253
           R+DFD +L  +M AHPK D  T E  A  +     P+L +  F  +G K  DV I  + +
Sbjct: 209 RYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEI-PLEQ 267
Query: 254 PTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMK 313
           PT IHDFAIT+   +  + Q+ V     ML  G P V D  K  R G++ K+A   +EM 
Sbjct: 268 PTMIHDFAITENLVVVPDHQV-VFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASEMA 326
Query: 314 WFNVPGFNAMHVFNAWEN-GEDEVVLIATNATSIENLFLKVD-MVHISLEKVRINLRTGN 371
           W +VP     H++NAWE+    EVV+I +  T  +++F + D  +   L ++R++ RTG 
Sbjct: 327 WVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGR 386
Query: 372 VSRNIL----SARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIEVSRR 427
            +R  +       NLE+G +N + +G++ RY ++ V +  PK+ G  K+DL    E+++ 
Sbjct: 387 STRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTG-ELTKF 445
Query: 428 FYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAA 487
            YG G FGGEP FVP +        EDDG+V+T++HDE  G S+ LV++A    L+  A 
Sbjct: 446 EYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLE--AT 503
Query: 488 VKLPRRVPYGFHGLFVHEENHSNQKS 513
           V+LP RVP+GFHG F+  +    Q +
Sbjct: 504 VQLPSRVPFGFHGTFITGQELEAQAA 529
>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490 Back     alignment and structure
>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 1e-151
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 1e-133
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 1e-108
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529 Back     alignment and structure
 Score =  441 bits (1134), Expect = e-151
 Identities = 184/510 (36%), Positives = 282/510 (55%), Gaps = 14/510 (2%)

Query: 13  PSLFTNIIDRP--LHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPN 70
                N+++RP  L  + DP     GNFAPV E  P     V G++P  + G+Y RNG N
Sbjct: 25  EGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGAN 84

Query: 71  PQHMPRGPLHFFEGDGMLHSMQLSKGRAI-YTSRYVKTYKYKLERDAGGQIFPNVFSGFY 129
           P   P    H F+GDGM+H++++  G A  Y  R+ +T + + ER  G  +FP      +
Sbjct: 85  PCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELH 144

Query: 130 GLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPYIINCTREGDI 189
           G   + +     AR   G V+   G G+AN  L +F+ +LLA+ E DLPY +    +GD+
Sbjct: 145 GHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDL 204

Query: 190 ETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPIL 249
           ET+GR+DFD +L  +M AHPK D  T E  A  +     P+L +  F  +G K  DV I 
Sbjct: 205 ETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEI- 263

Query: 250 SINRPTFIHDFAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSD 309
            + +PT IHDFAIT+   +  + Q+      ++ G G P V D  K  R G++ K+A   
Sbjct: 264 PLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRG-GSPVVLDAAKTSRFGVLPKHAADA 322

Query: 310 AEMKWFNVPGFNAMHVFNAWEN-GEDEVVLIATNATSIENLF-LKVDMVHISLEKVRINL 367
           +EM W +VP     H++NAWE+    EVV+I +  T  +++F    + +   L ++R++ 
Sbjct: 323 SEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDA 382

Query: 368 RTGNVSRNIL----SARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGVVKIDLEKEIE 423
           RTG  +R  +       NLE+G +N + +G++ RY ++ V +  PK+ G  K+DL    E
Sbjct: 383 RTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTG-E 441

Query: 424 VSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLD 483
           +++  YG G FGGEP FVP +        EDDG+V+T++HDE  G S+ LV++A   ++ 
Sbjct: 442 LTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAA--DMR 499

Query: 484 IVAAVKLPRRVPYGFHGLFVHEENHSNQKS 513
           + A V+LP RVP+GFHG F+  +    Q +
Sbjct: 500 LEATVQLPSRVPFGFHGTFITGQELEAQAA 529
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490 Back     alignment and structure
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
3npe_A529 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; 100.0
2biw_A490 Apocarotenoid-cleaving oxygenase; non-heme iron, c 100.0
3kvc_A533 Retinoid isomerohydrolase; 7-bladed beta-propeller 100.0
>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Back     alignment and structure
Probab=100.00  E-value=9.6e-125  Score=1016.69  Aligned_cols=487  Identities=37%  Similarity=0.690  Sum_probs=434.9

Q ss_pred             cCCCCCCCCCCCcccCCCccccccCCCCCCeeeecCCCCCceEEEeecCCCCCCCCCCCccccCCCcEEEEEEecCeE-E
Q 040986           21 DRPLHPSVDPKHVFTGNFAPVDELGPTECPVVDGKLPDSLTGMYIRNGPNPQHMPRGPLHFFEGDGMLHSMQLSKGRA-I   99 (514)
Q Consensus        21 ~~~~~~~~~~~~~l~g~~~p~~e~~~~~~~~v~G~iP~~L~Gtl~RnGP~~~~~~~~~~H~FDGdGmv~~~~f~~G~v-~   99 (514)
                      +.+++.+++|+.+|+|+|+|++||.+...++|+|+||+||+|||||||||+.+.+...+||||||||||+|+|+||+| +
T Consensus        35 ~~~~~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpnP~f~~~~~~HwFDGdGmlh~~~f~~G~a~~  114 (529)
T 3npe_A           35 PHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAES  114 (529)
T ss_dssp             TSCCCTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBCCSSCCSSCCCGGGSCBEEEEEEEETTEEEE
T ss_pred             cCCCCCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCCcCcCCcCCCccCCCCceEEEEEECCCccce
Confidence            456788999999999999999999888788999999999999999999998776667799999999999999999999 9


Q ss_pred             EEEEeecchhhHHHHhcCCcCCCCcccccCCcchhhhhhhhhhhhhhcccCCCCCcccceeEEEEeCCeEEEEeeCCCCe
Q 040986          100 YTSRYVKTYKYKLERDAGGQIFPNVFSGFYGLVDMVQCVASTARVLMGHVNLKKGFGLANTSLAFFSSKLLALGESDLPY  179 (514)
Q Consensus       100 y~~R~vrT~~~~~e~~ag~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aNt~v~~~~grllAl~E~g~P~  179 (514)
                      |+||||||++|++|+++||++|++.+++..+.+++.|....+.+...+..+..+.+|+|||||++|+||||||||+|.||
T Consensus       115 y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ANtnvv~~~g~llAl~E~g~Py  194 (529)
T 3npe_A          115 YACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPY  194 (529)
T ss_dssp             EEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSCCGGGCCCCCCSCEEEETTEEEECCTTSCCE
T ss_pred             EEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccccccccCCCCeEEEEEECCEEEEEEcCCCce
Confidence            99999999999999999999999888887766666666554555444444444456899999999999999999999999


Q ss_pred             EEecCCCCCcceeeeccCCccccccCCCCceecCCCCeEEEEEecCCCCCeEEEEEEcCCCCeeeeEeeeecCCcceeee
Q 040986          180 IINCTREGDIETLGRWDFDEELFASMTAHPKTDMTTKETFAFKFSPFFSPHLTFSRFDANGVKQKDVPILSINRPTFIHD  259 (514)
Q Consensus       180 ~ld~~~~~TLeT~g~~~~~~~l~~~~tAHPk~Dp~tG~l~~f~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~iHd  259 (514)
                      +++++++.||||+|.+||+|+|+..||||||+||.||||++|+|+...+|+++|++++++|++.+.+++ +++.++||||
T Consensus       195 ~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p~~~~~~~~~~G~~~~~~~i-~~~~p~~~HD  273 (529)
T 3npe_A          195 HVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEI-PLEQPTMIHD  273 (529)
T ss_dssp             EEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSCCCEEEEECTTCCBCCCEEC-CCSSCBCCCC
T ss_pred             EEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCCcEEEEEECCCCCEEEEEEE-eCCCCceEee
Confidence            997754359999999999999998999999999999999999999877799999999999999888887 8999999999


Q ss_pred             eeecCCEEEEEeCccccchhHHHhCCCCceEEcCCCCcEEEEEeCCCCCCCceEEEecCCeeeeeecceeeeCC-CeEEE
Q 040986          260 FAITKRFAIFSETQLAVSAANVMLGKGMPTVFDPEKVPRIGIILKYATSDAEMKWFNVPGFNAMHVFNAWENGE-DEVVL  338 (514)
Q Consensus       260 faiTeny~V~~~~P~~~~~~~~l~~~~~~~~~~~~~~t~~~vipR~~~~~~~v~~~~~~~~f~~H~~NAyE~~~-g~Ivv  338 (514)
                      |+|||||+||+++|+.+|+.+++ .+++++.|+|++++||+||||++++.+.++||++|+||+||++||||+++ |+||+
T Consensus       274 FaiTenyvVf~~~Pl~~~~~~~~-~g~~~~~~~p~~~tr~~VipR~~~~~~~vrw~e~~~~f~fH~~NA~Ee~~~~~ivv  352 (529)
T 3npe_A          274 FAITENLVVVPDHQVVFKLQEML-RGGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVV  352 (529)
T ss_dssp             CEECSSEEEEEECSEEECGGGGT-TTCCSEEECTTSCCEEEEEETTCSSGGGCEEEECTTCEEEEEEEEEEETTTTEEEE
T ss_pred             EEecCCeEEEEeCCeEEcHHHHh-CCCCceEECCCCCcEEEEEECCCCCCCceEEEEcCCEEEEEecccEecCCCCeEEE
Confidence            99999999999999999999987 56789999999999999999997665689999999999999999999853 78999


Q ss_pred             EEEecCCchhhhhh-cccccceEEEEEEeCCCCceEEEeec----cCCccccccCCCCCCCCCceEEEeecccCCCCCeE
Q 040986          339 IATNATSIENLFLK-VDMVHISLEKVRINLRTGNVSRNILS----ARNLELGSINSSYIGKKNRYVFVGVGKEIPKMQGV  413 (514)
Q Consensus       339 d~~~~~~~~~~~~~-~~~~~~~l~R~~idl~tg~v~~~~l~----~~~~EfP~In~~~~gr~yry~Y~~~~~~~~~~~~l  413 (514)
                      |.|++.+.+.++.. .+..+++|+||+||+++|+++++.|.    +.++|||+||++|.||+|||+|+++.++...+++|
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l  432 (529)
T 3npe_A          353 IGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGF  432 (529)
T ss_dssp             EEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEEEECGGGTTSCCSEEEEEECCSTTSCCEE
T ss_pred             EEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccccCccccCceEChhHcCCccceEEEeccCCCCCcceE
Confidence            88887665443332 24567899999999999999988887    48999999999999999999999987766778999


Q ss_pred             EEEeCCCCeEEEEEEcCCCCcCCCcEEeecCCCCCCCCCCCCcEEEEEEEeCCCCeeeEEEEeCCCCCCceeEEEEcCCc
Q 040986          414 VKIDLEKEIEVSRRFYGPGCFGGEPLFVPRNGDHVDAADEDDGFVVTYIHDENYGESKFLVMDAKSPNLDIVAAVKLPRR  493 (514)
Q Consensus       414 ~k~D~~~g~~~~~~~~~~~~~~~EPvFVPrp~~~~~~~~EDDG~ll~~v~d~~~~~S~l~VlDA~~~~~gpVAr~~LP~~  493 (514)
                      +|+|++||+ .+.||+++++++|||||||||++.+.+.+|||||||++|+|..+++|+|+||||++|  .+|||++||++
T Consensus       433 ~K~D~~tg~-~~~~~~g~~~~~~EPvFVPrp~~~~~~~~EDDG~lLs~V~d~~~~~S~LlILDA~~l--~~vArv~LP~r  509 (529)
T 3npe_A          433 AKVDLSTGE-LTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADM--RLEATVQLPSR  509 (529)
T ss_dssp             EEEETTTCC-EEEEECCTTBCCCCCEEEECCSCSSSSCCTTCEEEEEEEEBSSCCCEEEEEEETTTT--EEEEEEEESSC
T ss_pred             EEEecCCCc-eEEEEcCCCccccCCEeeeCCCCCCCCCCCCCcEEEEEEEECCCCcEEEEEEeCCCC--ccceEEECCCC
Confidence            999999998 789999999999999999999610001699999999999999999999999999998  57999999999


Q ss_pred             CCCCcCccccCCccccccc
Q 040986          494 VPYGFHGLFVHEENHSNQK  512 (514)
Q Consensus       494 vP~GfHG~w~~~~~~~~~~  512 (514)
                      ||+||||+|++.++|.+|.
T Consensus       510 vP~GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          510 VPFGFHGTFITGQELEAQA  528 (529)
T ss_dssp             CCCCSCEEEEEHHHHTTCC
T ss_pred             CCCCccccccCHHHhhhhh
Confidence            9999999999999998885
>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Back     alignment and structure
>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00