Citrus Sinensis ID: 040990

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MLSFRCRRCPSLDDREKTESSFDGNDRNIGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccEEEEccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEcccEHHEEccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mlsfrcrrcpslddrektessfdgndrniglhtagrqLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHgvhrfashpsycgfhipsvgtqtmlcnpmstigpaIVVCHSFADMITHGR
Flexible Loop (DISEMBL)
mlsfrcrrcpslddrektessfdgndrniGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR
Low Complexity Region (SEG)
MLSFRCRRCPSLDDREKTESSFDGNDRNIGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR
Disordered region (IsUnstruct)
****************************IGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMI****
Disordered Region (DISOPRED)
********CP******KTESSFDGNDRNIGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHG*
Disordered Region (DISEMBL)
MLSFRCRRCP************DGNDRNIGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR
Disordered Region (DISPRO)
**SFRCRRCPSLD****T*SSFDGNDRNIGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSFRCRRCPSLDDREKTESSFDGNDRNIGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q93W54	197	Protein-S-isoprenylcystei	yes	no	0.518	0.350	0.579	8e-17
Q9FMW9	197	Protein-S-isoprenylcystei	no	no	0.548	0.370	0.534	5e-15
Q7XSR9	191	Probable protein-S-isopre	no	no	0.616	0.429	0.439	3e-14
A2XX73	191	Probable protein-S-isopre	N/A	no	0.616	0.429	0.439	3e-14
P87014	236	Protein-S-isoprenylcystei	yes	no	0.691	0.389	0.344	7e-09
Q558K8	237	Protein-S-isoprenylcystei	yes	no	0.488	0.274	0.369	2e-08
Q9WVM4	232	Protein-S-isoprenylcystei	no	no	0.571	0.327	0.355	3e-08
O60725	284	Protein-S-isoprenylcystei	yes	no	0.691	0.323	0.333	3e-08
Q9EQK7	283	Protein-S-isoprenylcystei	yes	no	0.466	0.219	0.387	3e-08
O12947	288	Protein-S-isoprenylcystei	N/A	no	0.481	0.222	0.343	1e-07

>sp|Q93W54|ICMTB_ARATH Protein-S-isoprenylcysteine O-methyltransferase B OS=Arabidopsis thaliana GN=ICMTB PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 51/69 (73%)

Query: 63  GWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVC 122
           G +FT+LIK+ REEHH+L+T GV++   HPSY GF I SVGTQ MLCNP+S I  A+VV 
Sbjct: 101 GRSFTHLIKIRREEHHKLVTEGVYQIMRHPSYSGFLIWSVGTQVMLCNPISAIAFAVVVW 160

Query: 123 HSFADMITH 131
             FA+ I +
Sbjct: 161 RFFAERIPY 169

Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues, resulting in the modulation of the function of prenylated proteins. Involved in negative regulation of abscisic acid signaling. Carboxyl methylation is a reversible and potentially regulated step in the post-translational modification of prenylated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0EC: 0

>sp|Q9FMW9|ICMTA_ARATH Protein-S-isoprenylcysteine O-methyltransferase A OS=Arabidopsis thaliana GN=ICMTA PE=1 SV=1

 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 48/73 (65%)

Query: 39  YQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFH 98
           + ++F      V E I   A    G +FT+LIK++ EEHH L+THGV+R   HPSYCGF 
Sbjct: 77  WVSNFGLIMIIVGEIIRKAAIITAGRSFTHLIKINYEEHHGLVTHGVYRLMRHPSYCGFL 136

Query: 99  IPSVGTQTMLCNP 111
           I SVGTQ MLCNP
Sbjct: 137 IWSVGTQVMLCNP 149

Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues, resulting in the modulation of the function of prenylated proteins. Involved in negative regulation of abscisic acid signaling. Carboxyl methylation is a reversible and potentially regulated step in the post-translational modification of prenylated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|Q7XSR9|ICMT_ORYSJ Probable protein-S-isoprenylcysteine O-methyltransferase OS=Oryza sativa subsp. japonica GN=ICMT PE=2 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query: 50  VPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109
           + E I  +A    G +FT++I++  E+ H+LITHGV+R   HP Y GF I +VGTQ MLC
Sbjct: 82  IGEVIRKLAVVTAGRSFTHVIRIHYEDQHKLITHGVYRLMRHPGYSGFLIWAVGTQVMLC 141

Query: 110 NPMSTIGPAIVVCHSFADMITH 131
           NP+ST+   +V+   F+  I +
Sbjct: 142 NPLSTVAFTLVLWRFFSKRIPY 163

Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues. Carboxyl methylation is a reversible and potentially regulated step in the post-translational modification of prenylated proteins.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|A2XX73|ICMT_ORYSI Probable protein-S-isoprenylcysteine O-methyltransferase OS=Oryza sativa subsp. indica GN=ICMT PE=3 SV=2

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 53/82 (64%)

Query: 50  VPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109
           + E I  +A    G +FT++I++  E+ H+LITHGV+R   HP Y GF I +VGTQ MLC
Sbjct: 82  IGEVIRKLAVVTAGRSFTHVIRIHYEDQHKLITHGVYRLMRHPGYSGFLIWAVGTQVMLC 141

Query: 110 NPMSTIGPAIVVCHSFADMITH 131
           NP+ST+   +V+   F+  I +
Sbjct: 142 NPLSTVAFTLVLWRFFSKRIPY 163

Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues. Carboxyl methylation is a reversible and potentially regulated step in the post-translational modification of prenylated proteins.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|P87014|MAM4_SCHPO Protein-S-isoprenylcysteine O-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mam4 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 38  LYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGF 97
           +YQTS   F   + +Y+ + A    G +F++++   R + H L+T G++ +  HPSY GF
Sbjct: 116 VYQTSALGFL-CLGQYLRSSAMVQAGQSFSHIVASKRNKDHLLVTDGIYAYVRHPSYVGF 174

Query: 98  HIPSVGTQTMLCNPMSTIGPAIVVCHSFADMIT 130
            I ++GTQ +L N +ST+  ++V+   F+  IT
Sbjct: 175 FIWALGTQMLLGNFVSTLLFSLVLWKFFSQRIT 207

Mediates C-terminal methylation of the isoprenylated C-terminal cysteine in M-factor.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|Q558K8|ICMT_DICDI Protein-S-isoprenylcysteine O-methyltransferase OS=Dictyostelium discoideum GN=icmt-1 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 43/65 (66%)

Query: 52  EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
           + + ++A    G  FT+L++  + + H L+T+G++++  HPSY G+ + SV TQ +L NP
Sbjct: 130 QIVRSVAMDTAGSNFTHLVQEEKRDDHVLVTNGIYQYMRHPSYFGWFVWSVSTQVILMNP 189

Query: 112 MSTIG 116
           +S IG
Sbjct: 190 ISIIG 194

Methylates the C-terminal cysteine residues of small GTPases and the heterotrimeric G protein gamma subunit in response to cAMP. The methylation is required for intercellular signaling and regulation of cAMP waves propagation. It also seems to induce the activity of car1, a G protein-coupled receptor which senses extracellular cAMP during the aggregation phase of development.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|Q9WVM4|ICMT_RAT Protein-S-isoprenylcysteine O-methyltransferase (Fragment) OS=Rattus norvegicus GN=Icmt PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 43/76 (56%)

Query: 52  EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
           E +  +A    G  F ++++  + + H L+T GV+ +  HPSY G+   S+GTQ MLCNP
Sbjct: 119 ECLRKVAMFTAGSNFNHVVQSEKSDTHTLVTSGVYAWCRHPSYVGWFYWSIGTQVMLCNP 178

Query: 112 MSTIGPAIVVCHSFAD 127
           +  +  A+ V   F D
Sbjct: 179 ICGVVYALTVWRFFRD 194

Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|O60725|ICMT_HUMAN Protein-S-isoprenylcysteine O-methyltransferase OS=Homo sapiens GN=ICMT PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 36  RQLYQTSFTAFFFQV-PEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSY 94
           +Q+   S T     V  E +   A    G  F ++++  + + H L+T GV+ +  HPSY
Sbjct: 154 KQITWLSVTGLLMVVFGECLRKAAMFTAGSNFNHVVQNEKSDTHTLVTSGVYAWFRHPSY 213

Query: 95  CGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFAD 127
            G+   S+GTQ MLCNP+  +  A+ V   F D
Sbjct: 214 VGWFYWSIGTQVMLCNPICGVSYALTVWRFFRD 246

Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|Q9EQK7|ICMT_MOUSE Protein-S-isoprenylcysteine O-methyltransferase OS=Mus musculus GN=Icmt PE=2 SV=2

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 38/62 (61%)

Query: 66  FTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSF 125
           F ++++  + + H L+T GV+ +  HPSY G+   S+GTQ MLCNP+  +  A+ V   F
Sbjct: 184 FNHVVQSEKSDTHTLVTSGVYAWCRHPSYVGWFYWSIGTQVMLCNPICGVVYALTVWRFF 243

Query: 126 AD 127
            D
Sbjct: 244 RD 245

Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

>sp|O12947|ICMT_XENLA Protein-S-isoprenylcysteine O-methyltransferase OS=Xenopus laevis GN=icmt PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 39/64 (60%)

Query: 66  FTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSF 125
           F ++++  + + H L+T GV+ +  HPSY G+   S+GTQ +LCNP+  +G  +     F
Sbjct: 189 FNHIVQNEKSDSHTLVTSGVYSWFRHPSYVGWFYWSIGTQVLLCNPLCLVGYTLASWRFF 248

Query: 126 ADMI 129
           ++ I
Sbjct: 249 SERI 252

Catalyzes the post-translational methylation of isoprenylated C-terminal cysteine residues.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 0

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
255587564	197	protein-s isoprenylcysteine O-methyltran	0.616	0.416	0.609	1e-19
255581576	197	protein-s isoprenylcysteine O-methyltran	0.616	0.416	0.585	8e-18
224083874	197	predicted protein [Populus trichocarpa]	0.616	0.416	0.597	9e-18
225462549	197	PREDICTED: protein-S-isoprenylcysteine O	0.616	0.416	0.536	1e-16
388493364	197	unknown [Lotus japonicus]	0.616	0.416	0.536	6e-16
224096508	197	predicted protein [Populus trichocarpa]	0.563	0.380	0.6	8e-16
118483424	197	unknown [Populus trichocarpa]	0.563	0.380	0.6	8e-16
356560077	197	PREDICTED: protein-S-isoprenylcysteine O	0.616	0.416	0.536	2e-15
297806873	197	prenylcysteine alpha-carboxyl methyltran	0.601	0.406	0.525	2e-15
449454488	197	PREDICTED: protein-S-isoprenylcysteine O	0.616	0.416	0.512	4e-15

>gi|255587564|ref|XP_002534313.1| protein-s isoprenylcysteine O-methyltransferase, putative [Ricinus communis] gi|223525514|gb|EEF28069.1| protein-s isoprenylcysteine O-methyltransferase, putative [Ricinus communis]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 60/82 (73%)

Query: 50  VPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109
           + E I  +A    G AFT+LIK+  EEHH+LITHGV+RF  HPSYCGF I SVGTQ MLC
Sbjct: 88  IGEVIRKMAIITAGRAFTHLIKIYHEEHHKLITHGVYRFVRHPSYCGFFIWSVGTQIMLC 147

Query: 110 NPMSTIGPAIVVCHSFADMITH 131
           NP+STI  A+VV H FA+ I +
Sbjct: 148 NPISTIAFAVVVWHFFANRIPY 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581576|ref|XP_002531593.1| protein-s isoprenylcysteine O-methyltransferase, putative [Ricinus communis] gi|223528789|gb|EEF30796.1| protein-s isoprenylcysteine O-methyltransferase, putative [Ricinus communis]

 Score = 95.1 bits (235), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 57/82 (69%)

Query: 50  VPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109
           + E I  +A    G AFT+LIK+  EEHH+LIT GV+RF  HP YCGF I SVGTQ MLC
Sbjct: 88  IGELIRKMAIITAGRAFTHLIKIYHEEHHKLITSGVYRFVRHPGYCGFFIWSVGTQIMLC 147

Query: 110 NPMSTIGPAIVVCHSFADMITH 131
           NP+STI  A+VV   FAD I +
Sbjct: 148 NPISTIAFAVVVWLFFADRIPY 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083874|ref|XP_002307153.1| predicted protein [Populus trichocarpa] gi|222856602|gb|EEE94149.1| predicted protein [Populus trichocarpa]

 Score = 95.1 bits (235), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 57/82 (69%)

Query: 50  VPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109
           + E I  +A    G AFT+LIKV  EEHH LITHG++RF  HPSY GF I SVGTQ MLC
Sbjct: 88  IGEIIRKLAIITAGLAFTHLIKVYHEEHHNLITHGIYRFFRHPSYTGFLIWSVGTQIMLC 147

Query: 110 NPMSTIGPAIVVCHSFADMITH 131
           NP+STIG AIVV   F+  I +
Sbjct: 148 NPISTIGFAIVVWRFFSQRIPY 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462549|ref|XP_002267246.1| PREDICTED: protein-S-isoprenylcysteine O-methyltransferase B [Vitis vinifera] gi|296085262|emb|CBI28994.3| unnamed protein product [Vitis vinifera]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 57/82 (69%)

Query: 50  VPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109
           + E I  IA      AFT++I++ R+E H+L+T+GV+RF  HP YCGF I SVGTQ MLC
Sbjct: 88  IGEIIRKIAILTASQAFTHMIRIHRDEQHKLVTYGVYRFVRHPGYCGFLIWSVGTQIMLC 147

Query: 110 NPMSTIGPAIVVCHSFADMITH 131
           NP+STI  A+VV   FAD I +
Sbjct: 148 NPISTIAFAVVVWKFFADRIPY 169

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493364|gb|AFK34748.1| unknown [Lotus japonicus]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 58/82 (70%)

Query: 50  VPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109
           + E I  ++    G +FT+LI+V  +E+H+LITHGV+RF  HP YCGF I SV TQ MLC
Sbjct: 88  IGEIIRKMSIITAGKSFTHLIRVYHDENHQLITHGVYRFIRHPGYCGFFIWSVDTQIMLC 147

Query: 110 NPMSTIGPAIVVCHSFADMITH 131
           NP+STIG A+VV + FA  I +
Sbjct: 148 NPISTIGFAVVVWNFFAKRIPY 169

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096508|ref|XP_002310638.1| predicted protein [Populus trichocarpa] gi|222853541|gb|EEE91088.1| predicted protein [Populus trichocarpa]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 53/75 (70%)

Query: 57  IAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIG 116
           +A    G +FT+LIKV+ EE H LITHGV+RF  HPSY GF I SVGTQ ML NP+STIG
Sbjct: 95  LAIVTAGQSFTHLIKVNHEEQHNLITHGVYRFVRHPSYTGFLIWSVGTQIMLSNPISTIG 154

Query: 117 PAIVVCHSFADMITH 131
            AIVV   F+  I +
Sbjct: 155 FAIVVWRFFSQRIPY 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483424|gb|ABK93612.1| unknown [Populus trichocarpa]

 Score = 88.6 bits (218), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 53/75 (70%)

Query: 57  IAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIG 116
           +A    G +FT+LIKV+ EE H LITHGV+RF  HPSY GF I SVGTQ ML NP+STIG
Sbjct: 95  LAIVTAGQSFTHLIKVNHEEQHNLITHGVYRFVRHPSYTGFLIWSVGTQIMLSNPISTIG 154

Query: 117 PAIVVCHSFADMITH 131
            AIVV   F+  I +
Sbjct: 155 FAIVVWRFFSQRIPY 169

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560077|ref|XP_003548322.1| PREDICTED: protein-S-isoprenylcysteine O-methyltransferase B-like [Glycine max]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/82 (53%), Positives = 53/82 (64%)

Query: 50  VPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109
           + E I  I     G AFT+LIK+  EE H+LITHG++ +  HP YCGF I SVGTQ MLC
Sbjct: 88  IGEIIRKIGILTAGKAFTHLIKIYHEEQHQLITHGIYSYIRHPGYCGFLIWSVGTQIMLC 147

Query: 110 NPMSTIGPAIVVCHSFADMITH 131
           NP+STI  A VV   FA  I +
Sbjct: 148 NPISTIAFAAVVWRFFAKRIPY 169

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806873|ref|XP_002871320.1| prenylcysteine alpha-carboxyl methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297317157|gb|EFH47579.1| prenylcysteine alpha-carboxyl methyltransferase [Arabidopsis lyrata subsp. lyrata]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 54/80 (67%)

Query: 52  EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
           E I  IA    G +FT+LIK+ REEHH L+T GV++   HPSY GF + SVGTQ MLCNP
Sbjct: 90  EIIRKIAIITAGRSFTHLIKIRREEHHRLVTEGVYQIMRHPSYSGFLVWSVGTQVMLCNP 149

Query: 112 MSTIGPAIVVCHSFADMITH 131
           +S +  A+VV   FA+ I +
Sbjct: 150 ISAVAFAVVVWRFFAERIPY 169

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454488|ref|XP_004144986.1| PREDICTED: protein-S-isoprenylcysteine O-methyltransferase B-like isoform 1 [Cucumis sativus] gi|449454490|ref|XP_004144987.1| PREDICTED: protein-S-isoprenylcysteine O-methyltransferase B-like isoform 2 [Cucumis sativus] gi|449472482|ref|XP_004153608.1| PREDICTED: protein-S-isoprenylcysteine O-methyltransferase B-like isoform 1 [Cucumis sativus] gi|449472486|ref|XP_004153609.1| PREDICTED: protein-S-isoprenylcysteine O-methyltransferase B-like isoform 2 [Cucumis sativus] gi|449516531|ref|XP_004165300.1| PREDICTED: protein-S-isoprenylcysteine O-methyltransferase B-like isoform 1 [Cucumis sativus] gi|449516533|ref|XP_004165301.1| PREDICTED: protein-S-isoprenylcysteine O-methyltransferase B-like isoform 2 [Cucumis sativus]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 55/82 (67%)

Query: 50  VPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC 109
           V E +  +A    G  FT+LIK+  E+HH L+THGV+ F  HP Y GF + +VGTQ MLC
Sbjct: 88  VGEIVRKLAIITAGRCFTHLIKIYHEDHHNLVTHGVYSFVRHPGYSGFLVWAVGTQIMLC 147

Query: 110 NPMSTIGPAIVVCHSFADMITH 131
           NP+STI  A+VV H FA+ I +
Sbjct: 148 NPISTIAFAVVVWHFFAERIPY 169

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2166963	197	STE14A "homolog of yeast STE14	0.684	0.461	0.505	8.3e-19
TAIR|locus:505006585	197	ATSTE14B [Arabidopsis thaliana	0.601	0.406	0.525	5.3e-17
SGD|S000002818	239	STE14 "Farnesyl cysteine-carbo	0.586	0.326	0.371	4.5e-11
POMBASE|SPAC10F6.12c	236	mam4 "protein-S isoprenylcyste	0.691	0.389	0.344	1.2e-10
RGD|621618	232	Icmt "isoprenylcysteine carbox	0.571	0.327	0.355	1e-09
DICTYBASE|DDB_G0273995	237	icmA-2 "protein-S-isoprenylcys	0.488	0.274	0.369	1.5e-09
DICTYBASE|DDB_G0272799	237	icmA-1 "protein-S-isoprenylcys	0.488	0.274	0.369	1.5e-09
UNIPROTKB|F1RIM1	284	ICMT "Uncharacterized protein"	0.691	0.323	0.344	1.8e-09
UNIPROTKB|G3V7G5	284	Icmt "Isoprenylcysteine carbox	0.571	0.267	0.355	2.3e-09
UNIPROTKB|G3N1V4	284	ICMT "Uncharacterized protein"	0.571	0.267	0.368	3e-09

TAIR|locus:2166963 STE14A "homolog of yeast STE14 A" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 46/91 (50%), Positives = 58/91 (63%)

Query:    41 TSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIP 100
             ++F      V E I   A    G +FT+LIK++ EEHH L+THGV+R   HPSYCGF I 
Sbjct:    79 SNFGLIMIIVGEIIRKAAIITAGRSFTHLIKINYEEHHGLVTHGVYRLMRHPSYCGFLIW 138

Query:   101 SVGTQTMLCNPMSTIGPAIVVCHSFADMITH 131
             SVGTQ MLCNP+S +  A+VV   FA  I +
Sbjct:   139 SVGTQVMLCNPVSAVAFAVVVWRFFAQRIPY 169

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=IEA;IGI;ISS;IDA

GO:0006481 "C-terminal protein methylation" evidence=IEA;ISS;IMP;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0010340 "carboxyl-O-methyltransferase activity" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:505006585 ATSTE14B [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 42/80 (52%), Positives = 54/80 (67%)

Query:    52 EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
             E +   A    G +FT+LIK+ REEHH+L+T GV++   HPSY GF I SVGTQ MLCNP
Sbjct:    90 EILRKTAIITAGRSFTHLIKIRREEHHKLVTEGVYQIMRHPSYSGFLIWSVGTQVMLCNP 149

Query:   112 MSTIGPAIVVCHSFADMITH 131
             +S I  A+VV   FA+ I +
Sbjct:   150 ISAIAFAVVVWRFFAERIPY 169

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=IEA;IGI;ISS;IDA

GO:0006481 "C-terminal protein methylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=NAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009908 "flower development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

SGD|S000002818 STE14 "Farnesyl cysteine-carboxyl methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 29/78 (37%), Positives = 47/78 (60%)

Query:    52 EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
             +Y   IA H  G +F++++K  +E  H L+  GV+ ++ HPSY GF   ++GTQ +L NP
Sbjct:   133 QYTRTIAMHTAGHSFSHIVKTKKESDHVLVKTGVYSWSRHPSYLGFFWWAIGTQLLLLNP 192

Query:   112 MSTIGPAIVVCHSFADMI 129
             +S +    V+   F+D I
Sbjct:   193 LSLVIFIFVLWKFFSDRI 210

GO:0019236 "response to pheromone" evidence=IEA

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=IEA;IDA;IMP

GO:0016021 "integral to membrane" evidence=ISM;IEA

GO:0016020 "membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0007323 "peptide pheromone maturation" evidence=IMP

GO:0006481 "C-terminal protein methylation" evidence=IEA;IMP

GO:0032259 "methylation" evidence=IEA

GO:0005637 "nuclear inner membrane" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

POMBASE|SPAC10F6.12c mam4 "protein-S isoprenylcysteine O-methyltransferase Mam4" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 32/93 (34%), Positives = 56/93 (60%)

Query:    38 LYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGF 97
             +YQTS   F   + +Y+ + A    G +F++++   R + H L+T G++ +  HPSY GF
Sbjct:   116 VYQTSALGFLC-LGQYLRSSAMVQAGQSFSHIVASKRNKDHLLVTDGIYAYVRHPSYVGF 174

Query:    98 HIPSVGTQTMLCNPMSTIGPAIVVCHSFADMIT 130
              I ++GTQ +L N +ST+  ++V+   F+  IT
Sbjct:   175 FIWALGTQMLLGNFVSTLLFSLVLWKFFSQRIT 207

GO:0000749 "response to pheromone involved in conjugation with cellular fusion" evidence=IC

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0018125 "peptidyl-cysteine methylation" evidence=IMP

GO:0018229 "peptidyl-L-cysteine methyl ester biosynthetic process from peptidyl-cysteine" evidence=IMP

GO:0034613 "cellular protein localization" evidence=IMP

GO:0071432 "peptide mating pheromone maturation involved in conjugation with cellular fusion" evidence=IMP

RGD|621618 Icmt "isoprenylcysteine carboxyl methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 27/76 (35%), Positives = 43/76 (56%)

Query:    52 EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
             E +  +A    G  F ++++  + + H L+T GV+ +  HPSY G+   S+GTQ MLCNP
Sbjct:   119 ECLRKVAMFTAGSNFNHVVQSEKSDTHTLVTSGVYAWCRHPSYVGWFYWSIGTQVMLCNP 178

Query:   112 MSTIGPAIVVCHSFAD 127
             +  +  A+ V   F D
Sbjct:   179 ICGVVYALTVWRFFRD 194

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=ISO;IMP

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0006479 "protein methylation" evidence=ISO

GO:0006481 "C-terminal protein methylation" evidence=ISO;IMP

GO:0008104 "protein localization" evidence=ISO

GO:0008140 "cAMP response element binding protein binding" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=ISO

GO:0046498 "S-adenosylhomocysteine metabolic process" evidence=IMP

GO:0046499 "S-adenosylmethioninamine metabolic process" evidence=IMP

GO:0046578 "regulation of Ras protein signal transduction" evidence=ISO

DICTYBASE|DDB_G0273995 icmA-2 "protein-S-isoprenylcysteine O-methyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 140 (54.3 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 24/65 (36%), Positives = 43/65 (66%)

Query:    52 EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
             + + ++A    G  FT+L++  + + H L+T+G++++  HPSY G+ + SV TQ +L NP
Sbjct:   130 QIVRSVAMDTAGSNFTHLVQEEKRDDHVLVTNGIYQYMRHPSYFGWFVWSVSTQVILMNP 189

Query:   112 MSTIG 116
             +S IG
Sbjct:   190 ISIIG 194

GO:0060176 "regulation of aggregation involved in sorocarp development" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IMP

GO:0006481 "C-terminal protein methylation" evidence=IEA;IDA

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IMP

GO:0006998 "nuclear envelope organization" evidence=IMP

DICTYBASE|DDB_G0272799 icmA-1 "protein-S-isoprenylcysteine O-methyltransferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 140 (54.3 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 24/65 (36%), Positives = 43/65 (66%)

Query:    52 EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
             + + ++A    G  FT+L++  + + H L+T+G++++  HPSY G+ + SV TQ +L NP
Sbjct:   130 QIVRSVAMDTAGSNFTHLVQEEKRDDHVLVTNGIYQYMRHPSYFGWFVWSVSTQVILMNP 189

Query:   112 MSTIG 116
             +S IG
Sbjct:   190 ISIIG 194

GO:0060176 "regulation of aggregation involved in sorocarp development" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IMP

GO:0008277 "regulation of G-protein coupled receptor protein signaling pathway" evidence=IMP

GO:0006481 "C-terminal protein methylation" evidence=IEA;IDA

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=IEA;IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0034504 "protein localization to nucleus" evidence=IMP

GO:0006998 "nuclear envelope organization" evidence=IMP

UNIPROTKB|F1RIM1 ICMT "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 142 (55.0 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 32/93 (34%), Positives = 48/93 (51%)

Query:    36 RQLYQTSFTAFFFQV-PEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSY 94
             +Q+   S T     V  E +   A    G  F ++++  + E H L+T GV+ +  HPSY
Sbjct:   154 KQITWLSATGLLMVVFGECLRKAAMFTAGSNFNHVVQNEKSETHTLVTSGVYAWFRHPSY 213

Query:    95 CGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFAD 127
              G+   S+GTQ MLCNP+  +  A+ V   F D
Sbjct:   214 VGWFYWSIGTQVMLCNPICGVSYALTVWRFFRD 246

GO:0046578 "regulation of Ras protein signal transduction" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008140 "cAMP response element binding protein binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3V7G5 Icmt "Isoprenylcysteine carboxyl methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 141 (54.7 bits), Expect = 2.3e-09, P = 2.3e-09
 Identities = 27/76 (35%), Positives = 43/76 (56%)

Query:    52 EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
             E +  +A    G  F ++++  + + H L+T GV+ +  HPSY G+   S+GTQ MLCNP
Sbjct:   171 ECLRKVAMFTAGSNFNHVVQSEKSDTHTLVTSGVYAWCRHPSYVGWFYWSIGTQVMLCNP 230

Query:   112 MSTIGPAIVVCHSFAD 127
             +  +  A+ V   F D
Sbjct:   231 ICGVVYALTVWRFFRD 246

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0008140 "cAMP response element binding protein binding" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0046578 "regulation of Ras protein signal transduction" evidence=IEA

UNIPROTKB|G3N1V4 ICMT "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 3.0e-09, P = 3.0e-09
 Identities = 28/76 (36%), Positives = 42/76 (55%)

Query:    52 EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
             E +   A    G  F ++++  + E H L+T GV+ +  HPSY G+   S+GTQ MLCNP
Sbjct:   171 ECLRKAAMFTAGSNFNHVVQNEKSETHTLVTSGVYAWFRHPSYVGWFYWSIGTQVMLCNP 230

Query:   112 MSTIGPAIVVCHSFAD 127
             +  +  A+ V   F D
Sbjct:   231 ICGVSYALTVWRFFRD 246

GO:0046578 "regulation of Ras protein signal transduction" evidence=IEA

GO:0035264 "multicellular organism growth" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0008140 "cAMP response element binding protein binding" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0004671 "protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_V000124 hypothetical protein (197 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
pfam04140	94	pfam04140, ICMT, Isoprenylcysteine carboxyl methyl	1e-09

>gnl|CDD|217923 pfam04140, ICMT, Isoprenylcysteine carboxyl methyltransferase (ICMT) family

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 52  EYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP 111
           + +        G  +T+ + +  +  H L+T G +R+  HP+Y G  I  + TQ +LCN 
Sbjct: 9   QALRKWVMVTLGRIWTHRVMILPD--HRLVTSGPYRYLRHPNYFGNFIWELATQPLLCNA 66

Query: 112 MST 114
             T
Sbjct: 67  WYT 69

The isoprenylcysteine o-methyltransferase (EC:2.1.1.100) family carry out carboxyl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology. Length = 94

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
KOG2628	201	consensus Farnesyl cysteine-carboxyl methyltransfe	99.94
PF04140	94	ICMT: Isoprenylcysteine carboxyl methyltransferase	99.92
COG2020	187	STE14 Putative protein-S-isoprenylcysteine methylt	99.83
PF04191	106	PEMT: Phospholipid methyltransferase ; InterPro: I	99.81
COG1755	172	Uncharacterized protein conserved in bacteria [Fun	99.66
PF06966	235	DUF1295: Protein of unknown function (DUF1295); In	98.87
COG3752	272	Steroid 5-alpha reductase family enzyme [General f	98.06
KOG4650	311	consensus Predicted steroid reductase [General fun	97.91
PF01222	432	ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 fam	97.86
KOG4142	208	consensus Phospholipid methyltransferase [Lipid tr	97.36
PF07298	191	NnrU: NnrU protein; InterPro: IPR009915 This famil	97.08
PF02544	150	Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase	97.0
KOG1435	428	consensus Sterol reductase/lamin B receptor [Lipid	96.85
PLN02797	164	phosphatidyl-N-dimethylethanolamine N-methyltransf	96.85
PLN02392	260	probable steroid reductase DET2	96.1
PLN02560	308	enoyl-CoA reductase	94.24
COG4094	219	Predicted membrane protein [Function unknown]	92.46
KOG1638	257	consensus Steroid reductase [Lipid transport and m	90.34
PLN03164	323	3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal	86.06

>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=6.7e-28  Score=190.35  Aligned_cols=110  Identities=31%  Similarity=0.441  Sum_probs=103.2

Q ss_pred             cccccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHH
Q 040990           20 SSFDGNDRNIGLHTAGRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHI   99 (133)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l   99 (133)
                      +..+.|+.+..+|-..++    ..|+.++.+|+++|..|+.++|.+|+|.++.+++++|+|||+|||+|+|||+|.|+++
T Consensus        66 e~~~fP~lk~~~~l~~~~----~~gl~~~~~Ge~~r~~amitag~~f~H~va~~k~~~h~lv~~GvY~y~RHPsY~g~fl  141 (201)
T KOG2628|consen   66 EILLFPSLKQNSWLWSRI----GLGLLMLILGEALRKIAMITAGTSFTHYVATKKVSDHKLVTSGVYAYVRHPSYVGFFL  141 (201)
T ss_pred             HHHhCcchheeeeeeeec----cCceeeeehHHHHHHHHHHHHHHHHHHHHhhccccCceeEeccchhheeCchHHHHHH
Confidence            346788888888877776    5688889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcCC
Q 040990          100 PSVGTQTMLCNPMSTIGPAIVVCHSFADMITHGR  133 (133)
Q Consensus       100 ~~lG~~l~l~n~~~~l~~~~~~~~~f~~RI~~E~  133 (133)
                      |++|+|++++||+++++++.+.|.+|.+||+.||
T Consensus       142 w~~gtq~~L~npis~v~f~~V~w~ff~~Ri~~EE  175 (201)
T KOG2628|consen  142 WAAGTQTMLCNPISLVAFLLVVWRFFADRIKEEE  175 (201)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhHHH
Confidence            9999999999999999999999999999999997

>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2

Probab=99.92  E-value=7.9e-26  Score=159.68  Aligned_cols=85  Identities=29%  Similarity=0.344  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhH--HHHHHHHHHHHH
Q 040990           46 FFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP--MSTIGPAIVVCH  123 (133)
Q Consensus        46 ~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~--~~~l~~~~~~~~  123 (133)
                      +++.+|+.+|.||+.+||++||+.+.+  +++|++||+||||++|||+|+|++++.+|.+.++.|+  .+++..++..+.
T Consensus         3 ~~~i~g~~lr~~a~~~LG~~ft~~v~~--~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   80 (94)
T PF04140_consen    3 GLFIAGQLLRYWAIRTLGRYFTHRVII--QPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFNAWLTALILFALVAWL   80 (94)
T ss_dssp             --HHHHHHHHHHHHHHHGGG--SS--E--ETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHccccCcEEEEe--cCCCEEecccccccccCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            457789999999999999999999988  7899999999999999999999999999988888887  455555555555


Q ss_pred             HHHhhhhcCC
Q 040990          124 SFADMITHGR  133 (133)
Q Consensus       124 ~f~~RI~~E~  133 (133)
                      ++ .||+.||
T Consensus        81 l~-~RI~~EE   89 (94)
T PF04140_consen   81 LF-VRIREEE   89 (94)
T ss_dssp             HH-HHHHHHH
T ss_pred             HH-HHHHHHH
Confidence            44 9999997

1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.

>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=3.7e-20  Score=144.13  Aligned_cols=97  Identities=20%  Similarity=0.234  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHH
Q 040990           35 GRQLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMST  114 (133)
Q Consensus        35 ~~~~~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~  114 (133)
                      ..+.....+|+.++.+|..++.++.+.+|++++..++.  +++|+|||+|||+++|||+|+|++++.+|++++++|++.+
T Consensus        64 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~l  141 (187)
T COG2020          64 LIPSWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKA--RKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLWAL  141 (187)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCC--CCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHHHH
Confidence            34455566788889999999999999999997766644  7899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhcCC
Q 040990          115 IGPAIVVCHSFADMITHGR  133 (133)
Q Consensus       115 l~~~~~~~~~f~~RI~~E~  133 (133)
                      +.+.++.+.++..||+.||
T Consensus       142 ~~~~~~~~~~~~~~i~~EE  160 (187)
T COG2020         142 LIFVVLVALLFLFRIREEE  160 (187)
T ss_pred             HHHHHHHHHHHHHHhhHHH
Confidence            9888888888889999998

>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2

Probab=99.81  E-value=8.7e-20  Score=127.69  Aligned_cols=93  Identities=20%  Similarity=0.248  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHHHHHHHH
Q 040990           41 TSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIV  120 (133)
Q Consensus        41 ~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~~~~~  120 (133)
                      .++|+.++.+|..++.++...+|++.+.......+++++|||+||||++|||||+|.++..+|.+++.+|++.++..++.
T Consensus         3 ~~~G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~   82 (106)
T PF04191_consen    3 FVLGLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLA   82 (106)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            56788999999999999999999998876543224667799999999999999999999999999999999987766655


Q ss_pred             HHHHHHhhhhcCC
Q 040990          121 VCHSFADMITHGR  133 (133)
Q Consensus       121 ~~~~f~~RI~~E~  133 (133)
                      ....+..++..||
T Consensus        83 ~~~~~~~~~~~EE   95 (106)
T PF04191_consen   83 FLLYYIFIIRFEE   95 (106)
T ss_pred             HHHHHHHHHHhHH
Confidence            5555556664665

1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process

>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.66  E-value=4.1e-16  Score=120.92  Aligned_cols=89  Identities=12%  Similarity=0.141  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchh-hHHHHHHHHHHhhhHHHHHHHHHHH
Q 040990           43 FTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCG-FHIPSVGTQTMLCNPMSTIGPAIVV  121 (133)
Q Consensus        43 ~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G-~~l~~lG~~l~l~n~~~~l~~~~~~  121 (133)
                      +|+.++.+.+.+|.|++..||+.||.++.+  -++|++|++||||++|||+|+- .+.-.+|+.+....+...+++..+.
T Consensus        73 ~gl~~~l~s~~ll~~vi~~LG~iWttki~i--lP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~~p~y  150 (172)
T COG1755          73 IGLALLLFSQILLYWVIKSLGEIWTTKIMI--LPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLFSPIY  150 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhheeeEEE--eCCceeeccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466778889999999999999999999998  7899999999999999999999 6777999999999999888888877


Q ss_pred             HHHHHhhhhcCC
Q 040990          122 CHSFADMITHGR  133 (133)
Q Consensus       122 ~~~f~~RI~~E~  133 (133)
                      ..+.+.||+.||
T Consensus       151 a~~L~vRIr~Ee  162 (172)
T COG1755         151 ALLLYVRIRQEE  162 (172)
T ss_pred             HHHHhhhhhHHH
Confidence            888999999997

>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long

Probab=98.87  E-value=6.4e-09  Score=83.52  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhH
Q 040990           41 TSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNP  111 (133)
Q Consensus        41 ~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~  111 (133)
                      -.+|++++.+|..+=+.|=.++- .|.    .+++++.+++|+|+|+++|||+|+|..++..|..+...+.
T Consensus       121 ~~~g~~l~~~g~~~E~~AD~Q~~-~fk----~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~  186 (235)
T PF06966_consen  121 DILGIALFLIGFLLETVADQQKY-RFK----KDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISS  186 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHh----hCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhh
Confidence            35566677777777776666653 332    1224456799999999999999999999999988877654

>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]

Probab=98.06  E-value=1.5e-05  Score=66.12  Aligned_cols=65  Identities=15%  Similarity=0.130  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHH
Q 040990           43 FTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPM  112 (133)
Q Consensus        43 ~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~  112 (133)
                      +|+.+.+.|...=..+=.+|-.+-.     .++.+.++.++|.+|++|||+|+|..+...|.-++-.+.+
T Consensus       152 ~g~~iwivg~~fE~lgD~QL~~Fk~-----~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~  216 (272)
T COG3752         152 IGLAIWIVGIVFEALGDAQLWVFKK-----DPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEW  216 (272)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHh-----ChhhccccccccceecccCcchHHHHHHHHHHHHHHHhhh
Confidence            4555555555555544445432211     2366788999999999999999999988888777665543

>KOG4650 consensus Predicted steroid reductase [General function prediction only]

Probab=97.91  E-value=3.6e-05  Score=64.15  Aligned_cols=69  Identities=14%  Similarity=0.064  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhh
Q 040990           41 TSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCN  110 (133)
Q Consensus        41 ~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n  110 (133)
                      =++|..++..|..+-+.|=.+.-..-+..-... ..+..-.++|.+||+|||+|+|.-++..|+-+.-.+
T Consensus       177 D~I~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~-~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~  245 (311)
T KOG4650|consen  177 DVIGWTMWVFGFVIEALADQQKLSFKEARYDLE-NLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAP  245 (311)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhHHhhhcCHH-HcCCccccccceeeccCccHHHHHHHHHHHHHHHhh
Confidence            356677777788877766655433333332221 123338899999999999999999988887775543

>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis

Probab=97.86  E-value=7.2e-05  Score=65.48  Aligned_cols=35  Identities=20%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             cCCCeeeeccccccccCCcchhhHHHHHHHHHHhh
Q 040990           75 EEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC  109 (133)
Q Consensus        75 ~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~  109 (133)
                      +++.+|.++|-|+++|||+|+|.++.++++++..+
T Consensus       346 ~~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~g  380 (432)
T PF01222_consen  346 KRGSKLLVSGWWGIARHPNYLGDILMALAWCLPCG  380 (432)
T ss_pred             CCCCeEEEcChhHhhcccchHHHHHHHHHHHHHHh
Confidence            45678999999999999999999999999887654

They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane

>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]

Probab=97.36  E-value=0.00061  Score=53.91  Aligned_cols=86  Identities=16%  Similarity=0.156  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-------cCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHH
Q 040990           40 QTSFTAFFFQVPEYILAIAFHGTG-------WAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPM  112 (133)
Q Consensus        40 ~~~~gl~l~~~G~~lR~~a~~~LG-------~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~  112 (133)
                      ++-+|+.+|.+|+.+....+..||       +.|-...       .+-||.=|+...-||||-|..+..+|++++.+.|.
T Consensus        97 ~~~lg~alfglG~VLVLSSmykLG~~GTyLGDYFGiL~-------~eRVtgFPFNv~dNPMY~GSTl~fLg~Al~~gkpa  169 (208)
T KOG4142|consen   97 AYSLGLALFGLGVVLVLSSMYKLGFAGTYLGDYFGILK-------EERVTGFPFNVLDNPMYWGSTLNFLGWALMHGKPA  169 (208)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhccchhhhhhhhhhhh-------hhhcccccccccCCcccccchHHHHHHHHHcCCcc
Confidence            456788888899999998888874       4444222       22588889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhcCC
Q 040990          113 STIGPAIVVCHSFADMITHGR  133 (133)
Q Consensus       113 ~~l~~~~~~~~~f~~RI~~E~  133 (133)
                      .+++.+.+. ..+.--...||
T Consensus       170 GLllt~~V~-f~Y~iAL~~EE  189 (208)
T KOG4142|consen  170 GLLLTVLVA-FTYIIALLYEE  189 (208)
T ss_pred             hhHHHHHHH-HHHHHHHHhcC
Confidence            877665443 33444445555

>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins

Probab=97.08  E-value=0.0018  Score=51.09  Aligned_cols=40  Identities=13%  Similarity=0.071  Sum_probs=30.8

Q ss_pred             ccccccCCcchhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 040990           85 VHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHS  124 (133)
Q Consensus        85 ~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~~~~~~~~~  124 (133)
                      +|+++|||++.|..+|+++=.+..++.-+++.+..+..+.
T Consensus        96 i~r~~RHP~l~g~~lWA~aHLl~nGd~~~~lLFg~~~~~a  135 (191)
T PF07298_consen   96 IYRITRHPMLLGVLLWALAHLLANGDLASLLLFGGFLAWA  135 (191)
T ss_pred             HHHHhcCchHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHH
Confidence            9999999999999999988777777766666555444333

NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].

>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1

Probab=97.00  E-value=0.0065  Score=45.69  Aligned_cols=71  Identities=10%  Similarity=-0.035  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHH
Q 040990           39 YQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMST  114 (133)
Q Consensus        39 ~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~  114 (133)
                      ....+|+.+|.+|...=..+=..|.+.     +.+.+++.++-+.|.|+++..|.|++.++..+|.+++.+++.+.
T Consensus        40 ~~~~~g~~lf~~g~~~n~~~h~~L~~l-----r~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~~~~~  110 (150)
T PF02544_consen   40 PRFIIGLALFLIGSIGNFYSHLILANL-----RKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGSWPSY  110 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhhhhhH
Confidence            345668888888888777666666522     11224566788899999999999999999999999998875443

3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane

>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]

Probab=96.85  E-value=0.002  Score=56.78  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=33.1

Q ss_pred             cCCCeeeeccccccccCCcchhhHHHHHHHHHHhh--hHHH
Q 040990           75 EEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC--NPMS  113 (133)
Q Consensus        75 ~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~--n~~~  113 (133)
                      .++.+|.++|-|+++|||+|+|.++.++++++-.+  +++.
T Consensus       342 ~~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf~s~lp  382 (428)
T KOG1435|consen  342 STGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGFNSPLP  382 (428)
T ss_pred             ccCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccCCCCcc
Confidence            45789999999999999999999999999888654  5544

>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase

Probab=96.85  E-value=0.0072  Score=47.04  Aligned_cols=67  Identities=13%  Similarity=0.076  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhh
Q 040990           42 SFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC  109 (133)
Q Consensus        42 ~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~  109 (133)
                      +.+..++.+|+++-...+..||.-=|..=..-..-- ..||.=|+.+.+||||-|..+..+|.+++..
T Consensus        67 l~~~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm-~~VT~FPFnv~~nPmY~GStl~fLg~al~~p  133 (164)
T PLN02797         67 LYFWPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNI-PWVTEFPFGVIRDPQYVGSILSLLACLSWVP  133 (164)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhCCceeeehhhhcccc-cccccCCCCCCCCcchhhHHHHHHHHHHHhh
Confidence            346677889999999999999643222111100011 2799999999999999999999999999883

>PLN02392 probable steroid reductase DET2

Probab=96.10  E-value=0.048  Score=45.26  Aligned_cols=69  Identities=13%  Similarity=-0.056  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHH
Q 040990           40 QTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMST  114 (133)
Q Consensus        40 ~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~  114 (133)
                      .+.+|+.+|.+|..+=..+=..|.+ ..    .+ .+++++=+.|.|+++..|+|+|.++.++|.+++..++.++
T Consensus       151 ~~~iG~~lF~~g~~~N~~sh~~L~~-LR----k~-g~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s~~~~  219 (260)
T PLN02392        151 RFFGGLVVFLWGMRINVWSDRVLVG-LK----RE-GGGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWSWAGF  219 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cc----cC-CCeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4677888888888877666555422 11    11 2345677789999999999999999999999988766543

>PLN02560 enoyl-CoA reductase

Probab=94.24  E-value=0.29  Score=41.30  Aligned_cols=71  Identities=7%  Similarity=-0.104  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCccceeeec-ccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHHH
Q 040990           40 QTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVS-REEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTI  115 (133)
Q Consensus        40 ~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~-~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l  115 (133)
                      .+.+|+++|.+|+..=..+=..|. +..    .. ...++++=..|.+++|--|+|++.++.++|.+++.+++.+++
T Consensus       193 ~~~~g~~lf~~~~~~N~~~h~~L~-~LR----~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~~~~~~  264 (308)
T PLN02560        193 QMKVGFGFGLVCQLANFYCHIILR-NLR----KPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQTVAGYL  264 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-hcC----CCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHccHHHHH
Confidence            456788888888877644433331 111    11 122344556688999999999999999999999998766543

>COG4094 Predicted membrane protein [Function unknown]

Probab=92.46  E-value=0.14  Score=41.50  Aligned_cols=54  Identities=13%  Similarity=0.103  Sum_probs=40.2

Q ss_pred             eeeeccccccccCCcchhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhcC
Q 040990           79 ELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIGPAIVVCHSFADMITHG  132 (133)
Q Consensus        79 ~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~~~~~~~~~f~~RI~~E  132 (133)
                      .+--+|+=+.+|||.-.|..+|++|=.+..+.--+++.+.-++.+....++.-|
T Consensus        97 ~~~~g~Ii~itRHP~l~g~~iWalaHll~nGd~~Svllfggf~l~~~~~~~~~~  150 (219)
T COG4094          97 HLYEGRIIRITRHPQLLGVVIWALAHLLANGDTFSVLLFGGFLLWAVVGVWSGD  150 (219)
T ss_pred             cccCCceEEEecCchhHHHHHHHHHHhhccCceeeHHHHHHHHHHHHHHhhhhh
Confidence            355677889999999999999999999999887776666655544444444433

>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]

Probab=90.34  E-value=0.82  Score=38.09  Aligned_cols=70  Identities=13%  Similarity=0.092  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHH
Q 040990           40 QTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMST  114 (133)
Q Consensus        40 ~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~  114 (133)
                      .+++|..+++.|.++=...=..|     .+++.+...+=+.=+.|.|.|+-=|+|+|.++-++|.++...|+-++
T Consensus       148 r~liG~~lfv~Gm~iN~~sD~iL-----~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws~p~~  217 (257)
T KOG1638|consen  148 RFLIGVVLFVTGMLINIYSDNIL-----RTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWSLPAL  217 (257)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHH-----HHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhhHHHH
Confidence            56778878877766544321111     11111112223455789999999999999999999999988876553

>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional

Probab=86.06  E-value=3.8  Score=35.26  Aligned_cols=65  Identities=11%  Similarity=-0.094  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhh
Q 040990           42 SFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLC  109 (133)
Q Consensus        42 ~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~  109 (133)
                      .+|+.+|.+|...=..+=..|.+ ....  ..+.+++++=+.|.++++--|+|++.++.++|.+++.+
T Consensus       212 ~iGl~lFlig~~~n~~~H~iLa~-LR~~--k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~  276 (323)
T PLN03164        212 WIGAAIFLWGWIHQYRCHAILGS-LREH--KKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASG  276 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-cCcC--CCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHc
Confidence            56777888887765544333321 1100  11233566777899999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
4a2n_B	194	Isoprenylcysteine carboxyl methyltransferase; memb	2e-09

>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans} Length = 194

 Score = 52.2 bits (125), Expect = 2e-09
 Identities = 10/77 (12%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 53  YILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPM 112
            +        G  ++ ++++  ++ H+L+  G+++   HP Y    +  +    +L N +
Sbjct: 90  GLFTKIHKDLGNNWSAILEI--KDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWV 147

Query: 113 STIGPAIVVCHSFADMI 129
             I   +     +   +
Sbjct: 148 VLIFGIVAWAILYFIRV 164

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
4a2n_B	194	Isoprenylcysteine carboxyl methyltransferase; memb	99.82

>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}

Probab=99.82  E-value=1.9e-20  Score=145.40  Aligned_cols=95  Identities=12%  Similarity=0.154  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeecccCCCeeeeccccccccCCcchhhHHHHHHHHHHhhhHHHHHH
Q 040990           37 QLYQTSFTAFFFQVPEYILAIAFHGTGWAFTYLIKVSREEHHELITHGVHRFASHPSYCGFHIPSVGTQTMLCNPMSTIG  116 (133)
Q Consensus        37 ~~~~~~~gl~l~~~G~~lR~~a~~~LG~~Ft~~v~~~~~~~h~LVT~G~Yr~vRHP~Y~G~~l~~lG~~l~l~n~~~~l~  116 (133)
                      +..+..+|++++.+|..++.+|..++|++|++.+.+  +++|+|||+|+|+++|||||+|.+++.+|+++..+|+++++.
T Consensus        74 p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~--~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~  151 (194)
T 4a2n_B           74 PDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEI--KDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIF  151 (194)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCE--ETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCC--CCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHH
Confidence            345667899999999999999999999999988766  678999999999999999999999999999999999988764


Q ss_pred             HHHHHHHHHHhhhhcCC
Q 040990          117 PAIVVCHSFADMITHGR  133 (133)
Q Consensus       117 ~~~~~~~~f~~RI~~E~  133 (133)
                      ..+.....+..||+.||
T Consensus       152 ~~~~~~~~~~~ri~~EE  168 (194)
T 4a2n_B          152 GIVAWAILYFIRVPKEE  168 (194)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333334568898886

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00