Citrus Sinensis ID: 041003

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MNSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFPL
Secondary Structure (PSIPRED)
ccHHHHHHccccEEEEEcccccccccccccccHHHHccccccccccccccccccccEEEEEEEcccHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHccccccccccEEEEcccccccccccccccccccccEEEEEccHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHcccEEcccccccccEEEEccccccHHHHHHHHHccccEEcHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccEEEEEEccHEEEEccccccccHHHcccccccHcccccccEEEccccHEEEEccHHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHcccccEEEEccEEEEcccccccccccccEEcccccEEEEEEcccccccccccccEEEcHHHHHHHHHHHHHHHHHHHHcccHcHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHcccEEEcccccccEEEEEEcccccHHHHHHHHHcccEEEcHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MNSEMVYRQKKLHLVLDldqtlphavdidilASKDRKYLMkqrgsssdgdlFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLnpkceyhissrlitredfkekgkksgdlvlrqeWGVVIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHglffenpvcgdvrcfLGKIQRQILVRCTLffsrdvddkefefplLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRqvekdyfpl
Flexible Loop (DISEMBL)
MNSEMVYRQKKLHLVldldqtlphaVDIDILASKDRKYLMKqrgsssdgdlfkMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLitredfkekgkksgdlvlrqewgvvIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFPL
Low Complexity Region (SEG)
MNSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFPL
Disordered region (IsUnstruct)
******YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYL**********DLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEK*****
Disordered Region (DISOPRED)
*NSEM**RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDV************VRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFPL
Disordered Region (DISEMBL)
MNSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYL*********GDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFPL
Disordered Region (DISPRO)
MNSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFPL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
Q00IB6	440	RNA polymerase II C-termi	yes	no	0.968	0.620	0.365	6e-42
Q8LL04	1241	RNA polymerase II C-termi	no	no	0.953	0.216	0.311	8e-25
Q9Y5B0	961	RNA polymerase II subunit	no	no	0.475	0.139	0.278	6e-09
Q7TSG2	960	RNA polymerase II subunit	yes	no	0.475	0.139	0.278	7e-09
Q8SV03	411	RNA polymerase II subunit	yes	no	0.464	0.318	0.314	4e-07
Q9P376	723	RNA polymerase II subunit	yes	no	0.460	0.179	0.281	5e-07
Q03254	732	RNA polymerase II subunit	yes	no	0.5	0.192	0.271	8e-07

>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1

 Score =  171 bits (432), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 173/320 (54%), Gaps = 47/320 (14%)

Query: 2   NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDG------DLFKMA 55
           +S  + RQ+KL+LVLDLD TL +   +  L  ++ +YL     S  DG       LF + 
Sbjct: 113 DSRFLQRQRKLYLVLDLDHTLLNTTILRDLKPEE-EYLKSHTHSLQDGCNVSGGSLFLLE 171

Query: 56  SELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED 115
               + K+R ++  FLK+AS+M+ +Y+ T   R+YA  MAKLL+PK EY    R+I+R+D
Sbjct: 172 FMQMMTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEY-FGDRVISRDD 230

Query: 116 FKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------------------- 154
              + +KS D+VL QE  V+I+DDTE  W  HK++L+++                     
Sbjct: 231 GTVRHEKSLDVVLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLS 290

Query: 155 ---------NGALVNVLRVMKTVHGLFFENPVCG----DVRCFLGKIQRQILVRCTLFFS 201
                    +GAL  VL+V+K  H LFFEN   G    DVR  L +++++IL  C + FS
Sbjct: 291 ELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFS 350

Query: 202 R--DVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLV 259
           R      K  + PL K  A ELGA C    + SV  VV++   +G +  R A +  K++V
Sbjct: 351 RVFPTKAKPEDHPLWKM-AEELGATCATEVDASVTHVVAMD--VGTEKARWAVREKKYVV 407

Query: 260 HPQWIYAAYYLWSRQVEKDY 279
           H  WI AA YLW +Q E+++
Sbjct: 408 HRGWIDAANYLWMKQPEENF 427

Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Required for normal plant growth.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2

 Score =  114 bits (285), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 151/321 (47%), Gaps = 52/321 (16%)

Query: 6    VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGD---LFKMASELFLVK 62
            ++  +KL LVLD+D TL ++   + + S+  + L K+     +     LF+        K
Sbjct: 922  MFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREKPYRHLFRFLHMGMWTK 981

Query: 63   VRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITR------EDF 116
            +R  I  FL+KASK+Y+++L T   + YA  MAKLL+PK     + R+I++       D 
Sbjct: 982  LRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKG-VLFNGRVISKGDDGDPLDG 1040

Query: 117  KEKGKKSGDL--VLRQEWGVVIVDDTEKVWKDHKEHLMLL-------------------- 154
             E+  KS DL  V+  E  VVI+DD+ +VW  HK +L+ +                    
Sbjct: 1041 DERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFGLLGPSL 1100

Query: 155  ----------NGALVNVLRVMKTVHGLFFENPVCG--DVRCFLGKIQRQILVRCTLFFSR 202
                       G L + L V++ +H  FF +      DVR  L   QR+IL  C + FSR
Sbjct: 1101 LELDRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVDVRNILASEQRKILAGCRIVFSR 1160

Query: 203  DV---DDKEFEFPLLKWRAGE-LGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFL 258
             +   + K    PL  W+  E  GA CT   +  V  VV+ S  LG      A    +F+
Sbjct: 1161 IIPVGEAKPHLHPL--WQTAEQFGAVCTTQVDEHVTHVVTNS--LGTDKVNWALTRGRFV 1216

Query: 259  VHPQWIYAAYYLWSRQVEKDY 279
            VHP W+ A+ +L+ R  E  Y
Sbjct: 1217 VHPGWVEASAFLYQRANENLY 1237

Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated signaling pathway and cold resistance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3

 Score = 61.6 bits (148), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 13/147 (8%)

Query: 2   NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLV 61
           + + ++R +KL L++DLDQTL H  +       ++     Q G             +   
Sbjct: 173 DQQRLHRNRKLVLMVDLDQTLIHTTEQHCQQMSNKGIFHFQLGR---------GEPMLHT 223

Query: 62  KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGK 121
           ++R + + FL+K +K+Y++++ T   R YA  +A  L+P+ +   S R+++R++  +   
Sbjct: 224 RLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKL-FSHRILSRDECIDPFS 282

Query: 122 KSGDLVLRQEWG---VVIVDDTEKVWK 145
           K+G+L      G   V I+DD E VWK
Sbjct: 283 KTGNLRNLFPCGDSMVCIIDDREDVWK 309

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 76/147 (51%), Gaps = 13/147 (8%)

Query: 2   NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLV 61
           + + ++R +KL L++DLDQTL H  +       ++     Q G             +   
Sbjct: 173 DQQRLHRNRKLVLMVDLDQTLIHTTEQHCPQMSNKGIFHFQLGR---------GEPMLHT 223

Query: 62  KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGK 121
           ++R + + FL+K +K+Y++++ T   R YA  +A  L+P+ +   S R+++R++  +   
Sbjct: 224 RLRPHCKDFLEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKL-FSHRILSRDECIDPFS 282

Query: 122 KSGDLVLRQEWG---VVIVDDTEKVWK 145
           K+G+L      G   V I+DD E VWK
Sbjct: 283 KTGNLRNLFPCGDSMVCIIDDREDVWK 309

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 25/156 (16%)

Query: 4   EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSS-DGDL-FKMASELFLV 61
           E +  Q KL LVLDLDQT+ H                   G+SS +G + F +    + V
Sbjct: 53  EALEMQMKLILVLDLDQTVLHTT----------------YGTSSLEGTVKFVIDRCRYCV 96

Query: 62  KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKG- 120
           K+R  +   L++ SK+Y+I++ T   R+YA  + ++++P  +Y    R+ITR++   +G 
Sbjct: 97  KLRPNLDYMLRRISKLYEIHVYTMGTRAYAERIVEIIDPSGKY-FDDRIITRDE--NQGV 153

Query: 121 --KKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL 154
             K+   L       +VI+DD   VW D+ E+L+L+
Sbjct: 154 LVKRLSRLFPHDHRNIVILDDRPDVW-DYCENLVLI 188

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcp1 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 37/167 (22%)

Query: 1   MNSEMVYR---QKKLHLVLDLDQTLPHA---------------VDIDILASKDRKYLMKQ 42
           + SE V R   +K+L L++DLDQT+ HA               V+ D+L  +D +    Q
Sbjct: 151 LESENVKRLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVL--RDVRSFNLQ 208

Query: 43  RGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKC 102
            G S         +  + +K R  + +FL+K S++Y++++ T   ++YA  +AK+++P  
Sbjct: 209 EGPSG-------YTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTG 261

Query: 103 EYHISSRLITREDFKEKGKKSGDLVLRQEWG-----VVIVDDTEKVW 144
           +     R+++R+D     +KS    LR+ +      VV++DD   VW
Sbjct: 262 KL-FQDRVLSRDDSGSLAQKS----LRRLFPCDTSMVVVIDDRGDVW 303

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1

 Score = 54.7 bits (130), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 25/166 (15%)

Query: 4   EMVYRQKKLHLVLDLDQTLPH-AVDIDILASK-------------------DRKYLMKQR 43
           E + R KKL LV+DLDQT+ H  VD  I   K                   D + ++   
Sbjct: 167 EHLRRDKKLILVVDLDQTIIHCGVDPTIAEWKNDPNNPNFETLRDVKSFTLDEELVLPLM 226

Query: 44  GSSSDGDLFKMASE---LFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNP 100
             + DG + +        + VKVR  +++F  K + ++++++ T   R+YA+ +AK+++P
Sbjct: 227 YMNDDGSMLRPPPVRKCWYYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDP 286

Query: 101 KCEYHISSRLITREDFKEKGKKS-GDLVLRQEWGVVIVDDTEKVWK 145
             E     R+++R++      KS   L    +  VV++DD   VW 
Sbjct: 287 TGEL-FGDRILSRDENGSLTTKSLAKLFPTDQSMVVVIDDRGDVWN 331

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
224142399	312	predicted protein [Populus trichocarpa]	0.971	0.878	0.350	3e-42
356564913	442	PREDICTED: RNA polymerase II C-terminal	0.936	0.597	0.364	4e-42
356498756	428	PREDICTED: RNA polymerase II C-terminal	0.939	0.619	0.363	8e-42
449447765	452	PREDICTED: RNA polymerase II C-terminal	0.968	0.603	0.369	2e-41
255570505	478	RNA polymerase II ctd phosphatase, putat	0.968	0.571	0.360	3e-41
449532013	340	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.968	0.802	0.366	9e-41
9758369	1065	unnamed protein product [Arabidopsis tha	0.968	0.256	0.365	3e-40
145334837	440	RNA polymerase II C-terminal domain phos	0.968	0.620	0.365	4e-40
242093742	558	hypothetical protein SORBIDRAFT_10g02558	0.960	0.485	0.338	1e-38
242087817	547	hypothetical protein SORBIDRAFT_09g01931	0.960	0.495	0.334	2e-37

>gi|224142399|ref|XP_002324546.1| predicted protein [Populus trichocarpa] gi|222865980|gb|EEF03111.1| predicted protein [Populus trichocarpa]

 Score =  178 bits (451), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 173/314 (55%), Gaps = 40/314 (12%)

Query: 2   NSEM--VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSD---GDLFKMAS 56
           N++M  + R KKL+L+LDLD TL ++  + +  + D +YL  Q  S  D   G LF ++S
Sbjct: 1   NTDMKNLLRHKKLYLILDLDHTLLNSTQL-MHMTLDEEYLNGQTDSLQDVSKGSLFMLSS 59

Query: 57  ELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF 116
              + K+R ++R FLK+AS+M+++Y+ T   R+YA+ MAKLL+P  EY  ++++I+R+D 
Sbjct: 60  MQMMTKLRPFVRTFLKEASQMFEMYIYTMGDRAYALEMAKLLDPGREY-FNAKVISRDDG 118

Query: 117 KEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL---------------------- 154
            ++ +K  D+VL QE  V+I+DDTE  W  HK++L+L+                      
Sbjct: 119 TQRHQKGLDVVLGQESAVLILDDTENAWMKHKDNLILMERYHFFASSCHQFGFNCKSLSE 178

Query: 155 --------NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDD 206
                    GAL ++L+V++ +H +FFE+         L  +++ +L  C + FSR    
Sbjct: 179 QKTDESESEGALASILKVLRKIHQIFFEDHTLSLALQVLKTVRKDVLKGCKIVFSRVFPT 238

Query: 207 KEFEFPLLKWRAGE-LGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIY 265
           +        WR  E LGA C+   + SV  VVS  S  G +    A +HNKFLV P WI 
Sbjct: 239 QSQADNHHLWRMAEQLGATCSTELDPSVTHVVSKDS--GTEKSHWASKHNKFLVQPGWIE 296

Query: 266 AAYYLWSRQVEKDY 279
           A  Y W RQ E+++
Sbjct: 297 ATNYFWQRQPEENF 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564913|ref|XP_003550691.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max]

 Score =  177 bits (449), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 43/307 (14%)

Query: 9   QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGS---SSDGDLFKMASELFLVKVRS 65
           +KKL+LVLDLD TL ++  +  L S++  +L+ Q  S    S G LFK+     + K+R 
Sbjct: 137 RKKLYLVLDLDHTLLNSTHLAQLTSEEL-HLLNQTDSLTNVSKGSLFKLEHMNMMTKLRP 195

Query: 66  YIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGD 125
           ++R FLK+AS+M+++Y+ T   R YA+ MAKLL+P+ EY  ++++I+R+D  +K +K  D
Sbjct: 196 FVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEY-FNAKVISRDDGTQKHQKGLD 254

Query: 126 LVLRQEWGVVIVDDTEKVWKDHKEHLMLL------------------------------N 155
           +VL QE  V+I+DDTE  W  HK++L+L+                              +
Sbjct: 255 VVLGQESAVIILDDTEHAWMKHKDNLILMERYHFFGSSCRQFGFNCKSLAELKSDEDETD 314

Query: 156 GALVNVLRVMKTVHGLFF---ENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFP 212
           GAL  +L+V+K VH +FF   E+    DVR  L  ++R++L  C + FSR V       P
Sbjct: 315 GALAKILKVLKQVHCMFFDKQEDFDDQDVRQVLSSVRREVLSGCVIIFSRIVHGA---IP 371

Query: 213 LLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWS 272
            L+  A ++GA C    + SV  VV+  +  G +  R A +  KF+VHP WI AA Y W 
Sbjct: 372 SLRKMAEQMGATCLTEIDPSVTHVVATDA--GTEKCRWAVKEKKFVVHPLWIEAANYFWQ 429

Query: 273 RQVEKDY 279
           +Q E+++
Sbjct: 430 KQPEENF 436

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498756|ref|XP_003518215.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max]

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 112/308 (36%), Positives = 174/308 (56%), Gaps = 43/308 (13%)

Query: 9   QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSD---GDLFKMASELFLVKVRS 65
           +KKL+LVLDLD TL ++  +  L S++  +L+ Q  S  D   G LFK+     + K+R 
Sbjct: 123 RKKLYLVLDLDHTLLNSTHLAHLTSEE-SHLLNQTDSLRDVSKGSLFKLEHMNMMTKLRP 181

Query: 66  YIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGD 125
           ++R FLK+AS+M+++Y+ T   R YA+ MAKLL+P+ EY  ++++I+R+D  +K +K  D
Sbjct: 182 FVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEY-FNAKVISRDDGTQKHQKGLD 240

Query: 126 LVLRQEWGVVIVDDTEKVWKDHKEHLMLL------------------------------N 155
           +VL QE  V+I+DDTE  W  HK++L+L+                              +
Sbjct: 241 VVLGQESAVLILDDTEHAWMKHKDNLILMERYHFFGSSCRQFGFNCKSLAELKSDENETD 300

Query: 156 GALVNVLRVMKTVHGLFF---ENPVCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFP 212
           GAL  +L+V+K VH +FF   E+    DVR  L  ++R++L  C + FSR V       P
Sbjct: 301 GALAKILKVLKQVHCMFFDKQEDFDDRDVRQMLSLVRREVLSGCVIIFSRIVHGA---IP 357

Query: 213 LLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWS 272
            L+  A ++GA C    + SV  VV+  +  G +  R A +  KF+VHP WI AA Y W 
Sbjct: 358 SLRKMAEQMGATCLTEIDPSVTHVVATDA--GTEKCRWAVKEKKFVVHPLWIEAANYFWQ 415

Query: 273 RQVEKDYF 280
           +Q E+++ 
Sbjct: 416 KQPEENFI 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447765|ref|XP_004141638.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Cucumis sativus]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 177/319 (55%), Gaps = 46/319 (14%)

Query: 2   NSEM--VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSD---GDLFKMAS 56
           N EM  + ++KKL LVLDLD TL ++ ++  L  ++ +YL  Q  S  D   G LF + S
Sbjct: 126 NKEMKELLQRKKLILVLDLDHTLLNSTELRYLTVEE-EYLRSQTDSLDDVTKGSLFLLNS 184

Query: 57  ELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF 116
              + K+R ++  FLK+ASK++++Y+ T   R YA  MAKLL+PK EY  SS++I+R+D 
Sbjct: 185 VHTMTKLRPFVHSFLKEASKLFEMYIYTMGERRYAFEMAKLLDPKKEY-FSSKVISRDDG 243

Query: 117 KEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL---------------------- 154
            +K +K  D+VL +E  V+I+DDTE  W  HKE+L+L+                      
Sbjct: 244 TQKHQKGLDVVLGKESAVLILDDTENAWTKHKENLILMERYHFFASSCRQFGFNCKSLSE 303

Query: 155 --------NGALVNVLRVMKTVHGLFFENPVCG-----DVRCFLGKIQRQILVRCTLFFS 201
                   +GAL  +L+V+K VH +FF N V G     DVR  L  ++ ++L  C + FS
Sbjct: 304 LKNDESETDGALTTILKVLKQVHHMFF-NEVSGDLVDRDVRQVLKTVRAEVLEGCKVVFS 362

Query: 202 RDVDDK-EFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVH 260
           R    K + E   L     +LG  C+   + SV  VV+  +  G +  R A +  KFLVH
Sbjct: 363 RVFPTKFQAENHQLWKMVEQLGGTCSTELDQSVTHVVATDA--GTEKSRWALKEKKFLVH 420

Query: 261 PQWIYAAYYLWSRQVEKDY 279
           P+WI A+ Y W RQ+E+++
Sbjct: 421 PRWIEASNYFWKRQMEENF 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570505|ref|XP_002526210.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis] gi|223534449|gb|EEF36151.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis]

 Score =  174 bits (442), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/319 (36%), Positives = 184/319 (57%), Gaps = 46/319 (14%)

Query: 2   NSEM--VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSD---GDLFKMAS 56
           N++M  + R +KL+LVLDLD TL ++  +  L +++ +YL  Q  S  D   G LF +  
Sbjct: 155 NTDMKNLLRHRKLYLVLDLDHTLLNSTQLMHLTAEE-EYLKSQIDSMQDVSNGSLFMVDF 213

Query: 57  ELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF 116
              + K+R +IR FLK+AS+M+++Y+ T   R+YA+ MAK L+P  EY  ++R+I+R+D 
Sbjct: 214 MHMMTKLRPFIRTFLKEASQMFEMYIYTMGDRAYALEMAKFLDPGREY-FNARVISRDDG 272

Query: 117 KEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL---------------------- 154
            ++ +K  D+VL QE  V+I+DDTE  W  HK++L+L+                      
Sbjct: 273 TQRHQKGLDIVLGQESAVLILDDTENAWTKHKDNLILMERYHFFASSCRQFGFECKSLSQ 332

Query: 155 --------NGALVNVLRVMKTVHGLFF---ENPVCG-DVRCFLGKIQRQILVRCTLFFSR 202
                   +GAL +VL+V++ +H +FF   E+ + G DVR  L  +++ +L  C + FSR
Sbjct: 333 LKSDENESDGALASVLKVLRRIHHIFFDELEDAIDGRDVRQVLSTVRKDVLKGCKIVFSR 392

Query: 203 DVDDKEFEFPLLK-WRAGE-LGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVH 260
            V   +F+      W+  E LGA C+   + SV  VVS  +  G +  R A +++KFLVH
Sbjct: 393 -VFPTQFQADNHHLWKMAEQLGATCSREVDPSVTHVVSAEA--GTEKSRWALKNDKFLVH 449

Query: 261 PQWIYAAYYLWSRQVEKDY 279
           P+WI A  Y+W RQ E+++
Sbjct: 450 PRWIEATNYMWQRQPEENF 468

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532013|ref|XP_004172979.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 4-like, partial [Cucumis sativus]

 Score =  173 bits (438), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 117/319 (36%), Positives = 175/319 (54%), Gaps = 46/319 (14%)

Query: 2   NSEM--VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSD---GDLFKMAS 56
           N EM  + ++ KL LVLDLD TL ++ ++  L  ++ +YL  Q  S  D   G LF + S
Sbjct: 14  NKEMKELLQRXKLILVLDLDHTLLNSTELRYLTVEE-EYLRSQTDSLDDVTKGSLFLLNS 72

Query: 57  ELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF 116
              + K+R ++  FLK+ASK++++Y+ T   R YA  MAKLL+PK EY  SS++I+R+D 
Sbjct: 73  VHTMTKLRPFVHSFLKEASKLFEMYIYTMGERRYAFEMAKLLDPKKEY-FSSKVISRDDG 131

Query: 117 KEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL---------------------- 154
            +K +K  D+VL +E  V+I+DDTE  W  HKE+L+L+                      
Sbjct: 132 TQKHQKGLDVVLGKESAVLILDDTENAWTKHKENLILMERYHFFASSCRQFGFNCKSLSE 191

Query: 155 --------NGALVNVLRVMKTVHGLFFENPVCG-----DVRCFLGKIQRQILVRCTLFFS 201
                   +GAL  +L+V+K VH +FF N V G     DVR  L  ++ ++L  C + FS
Sbjct: 192 LKNDESETDGALTTILKVLKQVHHMFF-NEVSGDLVDRDVRQVLKTVRAEVLEGCKVVFS 250

Query: 202 RDVDDKEFEFPLLKWRAGE-LGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVH 260
           R    K        W+  E LG  C+   + SV  VV+  +  G +  R A +  KFLVH
Sbjct: 251 RVFPTKFQAENHQLWKMVEQLGGTCSTELDQSVTHVVATDA--GTEKSRWALKEKKFLVH 308

Query: 261 PQWIYAAYYLWSRQVEKDY 279
           P+WI A+ Y W RQ+E+++
Sbjct: 309 PRWIEASNYFWKRQMEENF 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758369|dbj|BAB08870.1| unnamed protein product [Arabidopsis thaliana]

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 173/320 (54%), Gaps = 47/320 (14%)

Query: 2    NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDG------DLFKMA 55
            +S  + RQ+KL+LVLDLD TL +   +  L  ++ +YL     S  DG       LF + 
Sbjct: 738  DSRFLQRQRKLYLVLDLDHTLLNTTILRDLKPEE-EYLKSHTHSLQDGCNVSGGSLFLLE 796

Query: 56   SELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED 115
                + K+R ++  FLK+AS+M+ +Y+ T   R+YA  MAKLL+PK EY    R+I+R+D
Sbjct: 797  FMQMMTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEY-FGDRVISRDD 855

Query: 116  FKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------------------- 154
               + +KS D+VL QE  V+I+DDTE  W  HK++L+++                     
Sbjct: 856  GTVRHEKSLDVVLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLS 915

Query: 155  ---------NGALVNVLRVMKTVHGLFFENPVCG----DVRCFLGKIQRQILVRCTLFFS 201
                     +GAL  VL+V+K  H LFFEN   G    DVR  L +++++IL  C + FS
Sbjct: 916  ELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFS 975

Query: 202  R--DVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLV 259
            R      K  + PL K  A ELGA C    + SV  VV++   +G +  R A +  K++V
Sbjct: 976  RVFPTKAKPEDHPLWKM-AEELGATCATEVDASVTHVVAMD--VGTEKARWAVREKKYVV 1032

Query: 260  HPQWIYAAYYLWSRQVEKDY 279
            H  WI AA YLW +Q E+++
Sbjct: 1033 HRGWIDAANYLWMKQPEENF 1052

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334837|ref|NP_001078764.1| RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana] gi|122154038|sp|Q00IB6.1|CPL4_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 4; Short=FCP-like 4; AltName: Full=Carboxyl-terminal phosphatase-like 4; Short=AtCPL4; Short=CTD phosphatase-like 4 gi|95115186|gb|ABF55959.1| carboxyl-terminal phosphatase-like 4 [Arabidopsis thaliana] gi|332009601|gb|AED96984.1| RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana]

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/320 (36%), Positives = 173/320 (54%), Gaps = 47/320 (14%)

Query: 2   NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDG------DLFKMA 55
           +S  + RQ+KL+LVLDLD TL +   +  L  ++ +YL     S  DG       LF + 
Sbjct: 113 DSRFLQRQRKLYLVLDLDHTLLNTTILRDLKPEE-EYLKSHTHSLQDGCNVSGGSLFLLE 171

Query: 56  SELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED 115
               + K+R ++  FLK+AS+M+ +Y+ T   R+YA  MAKLL+PK EY    R+I+R+D
Sbjct: 172 FMQMMTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEY-FGDRVISRDD 230

Query: 116 FKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------------------- 154
              + +KS D+VL QE  V+I+DDTE  W  HK++L+++                     
Sbjct: 231 GTVRHEKSLDVVLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLS 290

Query: 155 ---------NGALVNVLRVMKTVHGLFFENPVCG----DVRCFLGKIQRQILVRCTLFFS 201
                    +GAL  VL+V+K  H LFFEN   G    DVR  L +++++IL  C + FS
Sbjct: 291 ELKSDESEPDGALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFS 350

Query: 202 R--DVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLV 259
           R      K  + PL K  A ELGA C    + SV  VV++   +G +  R A +  K++V
Sbjct: 351 RVFPTKAKPEDHPLWKM-AEELGATCATEVDASVTHVVAMD--VGTEKARWAVREKKYVV 407

Query: 260 HPQWIYAAYYLWSRQVEKDY 279
           H  WI AA YLW +Q E+++
Sbjct: 408 HRGWIDAANYLWMKQPEENF 427

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093742|ref|XP_002437361.1| hypothetical protein SORBIDRAFT_10g025580 [Sorghum bicolor] gi|241915584|gb|EER88728.1| hypothetical protein SORBIDRAFT_10g025580 [Sorghum bicolor]

 Score =  166 bits (420), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 171/313 (54%), Gaps = 42/313 (13%)

Query: 8   RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGD--LFKMASELFLVKVRS 65
           R++KL L+LDLD TL ++  +  ++S ++   ++   S  D +  +F + S   L K+R 
Sbjct: 161 RERKLVLILDLDHTLINSTKLQDISSAEKDLGIQTAASKDDPNRSIFSLDSMQMLTKLRP 220

Query: 66  YIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGD 125
           ++R+FLK+AS M+++Y+ T   ++YA+ +AKLL+P   Y   S++I+  D  ++ +K  D
Sbjct: 221 FVREFLKEASNMFEMYIYTMGDKAYAIEIAKLLDPSNIY-FPSKVISNSDCTQRHQKGLD 279

Query: 126 LVLRQEWGVVIVDDTEKVWKDHKEHLMLL------------------------------N 155
           ++L  E   VI+DDTE VW+ HKE+L+L+                              +
Sbjct: 280 VILGAESVAVILDDTEYVWQKHKENLILMERYHFFASSCRQFGFGVRSLSESMQDERESD 339

Query: 156 GALVNVLRVMKTVHGLFFENPV-----CGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFE 210
           GAL  VL V+K +H +FF+  V       DVR  +  ++++IL  C + FSR   +    
Sbjct: 340 GALATVLDVLKRIHSIFFDLAVETDLSSQDVRQVIKAVRKEILQGCKIVFSRVFPNNTRP 399

Query: 211 FPLLKWRAGE-LGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY 269
              + W+  E LGA C+   + SV  VV+V   LG +  R    + KFLVHP+WI AA +
Sbjct: 400 QEQMLWKMAEHLGAVCSTDVDSSVTHVVTVD--LGTEKARWGVANKKFLVHPRWIEAANF 457

Query: 270 LWSRQVEKDYFPL 282
            W RQ E+D FP+
Sbjct: 458 RWHRQPEED-FPV 469

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242087817|ref|XP_002439741.1| hypothetical protein SORBIDRAFT_09g019310 [Sorghum bicolor] gi|241945026|gb|EES18171.1| hypothetical protein SORBIDRAFT_09g019310 [Sorghum bicolor]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/314 (33%), Positives = 169/314 (53%), Gaps = 43/314 (13%)

Query: 8   RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGD--LFKMASELFLVKVRS 65
           R++KL L+LDLD TL ++  +  ++S ++   ++   S  D +  +F + S   L K+R 
Sbjct: 163 RERKLVLILDLDHTLINSTKLQNISSAEKDLGIQTAASKDDPNRSIFALESMQLLTKLRP 222

Query: 66  YIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGD 125
           ++R+FLK+AS M+++Y+ T   ++YA+ +AKLL+P   Y    ++I+  D  ++ +K  D
Sbjct: 223 FVREFLKEASNMFEMYIYTMGDKAYAIEIAKLLDPSNIY-FPLKVISNSDCTKRHQKGLD 281

Query: 126 LVLRQEWGVVIVDDTEKVWKDHKEHLMLL------------------------------N 155
           ++L      VI+DDTE VWK HKE+L+L+                              +
Sbjct: 282 VILGAASVAVILDDTEFVWKKHKENLILMERYHFFASSCREFGFAVRSLSELMQDERESD 341

Query: 156 GALVNVLRVMKTVHGLFFENPV------CGDVRCFLGKIQRQILVRCTLFFSRDVDDKEF 209
           GAL  VL V+K +H +FF+  V        DVR  +  ++++IL  C + FSR   +   
Sbjct: 342 GALATVLDVLKRIHAIFFDMAVETDDLSSRDVRQVIKAVRKEILQGCKIVFSRVFPNNTR 401

Query: 210 EFPLLKWRAGE-LGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAY 268
               + W+  E LGA C+   + SV  VV+V   LG +  R    + KFLVHP+WI AA 
Sbjct: 402 PQKQMVWKMAEYLGAVCSTDVDSSVTHVVTVD--LGTEKARWGVANKKFLVHPRWIEAAN 459

Query: 269 YLWSRQVEKDYFPL 282
           + W RQ E+D FP+
Sbjct: 460 FRWHRQPEED-FPV 472

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
TAIR|locus:4010714056	440	CPL4 "C-terminal domain phosph	0.535	0.343	0.402	1.2e-43
TAIR|locus:2090467	296	AT3G17550 [Arabidopsis thalian	0.503	0.479	0.421	1.1e-29
TAIR|locus:4515103095	307	AT3G19595 [Arabidopsis thalian	0.496	0.456	0.425	7.6e-29
TAIR|locus:2162565	306	AT5G54210 [Arabidopsis thalian	0.503	0.464	0.448	4.1e-28
TAIR|locus:2045044	277	AT2G04930 [Arabidopsis thalian	0.496	0.505	0.378	1.2e-24
TAIR|locus:2194666	255	AT1G43610 [Arabidopsis thalian	0.507	0.560	0.401	1.5e-24
TAIR|locus:2194656	221	AT1G43600 [Arabidopsis thalian	0.5	0.638	0.4	4.9e-24
TAIR|locus:2154458	302	AT5G23470 [Arabidopsis thalian	0.492	0.460	0.381	7.9e-24
TAIR|locus:2051164	1241	CPL3 "C-terminal domain phosph	0.517	0.117	0.348	9.3e-24
TAIR|locus:2012943	342	AT1G20320 [Arabidopsis thalian	0.482	0.397	0.434	6.1e-23

TAIR|locus:4010714056 CPL4 "C-terminal domain phosphatase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.2e-43, Sum P(2) = 1.2e-43
 Identities = 64/159 (40%), Positives = 98/159 (61%)

Query:     2 NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDG------DLFKMA 55
             +S  + RQ+KL+LVLDLD TL +   +  L  ++ +YL     S  DG       LF + 
Sbjct:   113 DSRFLQRQRKLYLVLDLDHTLLNTTILRDLKPEE-EYLKSHTHSLQDGCNVSGGSLFLLE 171

Query:    56 SELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED 115
                 + K+R ++  FLK+AS+M+ +Y+ T   R+YA  MAKLL+PK EY    R+I+R+D
Sbjct:   172 FMQMMTKLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEY-FGDRVISRDD 230

Query:   116 FKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL 154
                + +KS D+VL QE  V+I+DDTE  W  HK++L+++
Sbjct:   231 GTVRHEKSLDVVLGQESAVLILDDTENAWPKHKDNLIVI 269

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

TAIR|locus:2090467 AT3G17550 [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 1.1e-29, Sum P(2) = 1.1e-29
 Identities = 62/147 (42%), Positives = 100/147 (68%)

Query:     9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIR 68
             +KKL+LVLDLD TL H++ + +L S+  K L+++  S++  DL+K+ S+ +L K+R ++ 
Sbjct:    83 EKKLNLVLDLDHTLLHSIRVSLL-SETEKCLIEEACSTTREDLWKLDSD-YLTKLRPFVH 140

Query:    69 KFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVL 128
             +FLK+A++++ +Y+ T   R YA  + KL++PK  Y    R+ITR++      K+ DLVL
Sbjct:   141 EFLKEANELFTMYVYTMGTRVYAESLLKLIDPKRIY-FGDRVITRDE--SPYVKTLDLVL 197

Query:   129 RQEWGVVIVDDTEKVWKDHKEHLMLLN 155
              +E GVVIVDDT  VW  HK +L+ +N
Sbjct:   198 AEERGVVIVDDTSDVWTHHKSNLVEIN 224

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:4515103095 AT3G19595 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 63/148 (42%), Positives = 96/148 (64%)

Query:     9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASE----LFLVKVR 64
             +KKLHLVLDLD TL H V +  L S+  KYL+++ GS++  DL+K+ +      FL K+R
Sbjct:    89 EKKLHLVLDLDHTLLHTVMVPSL-SQAEKYLIEEAGSATRDDLWKIKAVGDPMEFLTKLR 147

Query:    65 SYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSG 124
              ++R FLK+A++ + +Y+ T   R YA  + +L++PK + +   R+IT+ +      K+ 
Sbjct:   148 PFLRDFLKEANEFFTMYVYTKGSRVYAKQVLELIDPK-KLYFGDRVITKTESPHM--KTL 204

Query:   125 DLVLRQEWGVVIVDDTEKVWKDHKEHLM 152
             D VL +E GVVIVDDT  VW DHK +L+
Sbjct:   205 DFVLAEERGVVIVDDTRNVWPDHKSNLV 232

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2162565 AT5G54210 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 66/147 (44%), Positives = 91/147 (61%)

Query:     7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSD-GDLFKMASELFLVKVRS 65
             +  KKLHLVLDLD TL H V I  L +K+  YL+++  S  D   L    S  FL+K+R 
Sbjct:    84 FNDKKLHLVLDLDHTLLHTVMISNL-TKEETYLIEEEDSREDLRRLNGGYSSEFLIKLRP 142

Query:    66 YIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGD 125
             ++ +FLK+A+KM+ +Y+ T   R YAM +  L++P+  Y    R+ITR +      K+ D
Sbjct:   143 FVHEFLKEANKMFSMYVYTMGDRDYAMNVLNLIDPEKVY-FGDRVITRNE--SPYIKTLD 199

Query:   126 LVLRQEWGVVIVDDTEKVWKDHKEHLM 152
             LVL  E GVVIVDDT  VW DHK +L+
Sbjct:   200 LVLADECGVVIVDDTPHVWPDHKRNLL 226

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2045044 AT2G04930 [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 56/148 (37%), Positives = 97/148 (65%)

Query:     9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFK---MASELF-LVKVR 64
             +KKLHLVLDLD TL H+  +  L+  +R YL+++  S +  DL+K   +   +  L+K+R
Sbjct:    64 EKKLHLVLDLDHTLLHSKLVSNLSQAER-YLIQEASSRTREDLWKFRPIGHPIDRLIKLR 122

Query:    65 SYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSG 124
              ++R FLK+A++M+ +++ T   R YA  + ++++PK + +  +R+IT+++      K+ 
Sbjct:   123 PFVRDFLKEANEMFTMFVYTMGSRIYAKAILEMIDPK-KLYFGNRVITKDESPRM--KTL 179

Query:   125 DLVLRQEWGVVIVDDTEKVWKDHKEHLM 152
             +LVL +E GVVIVDDT  +W  HK +L+
Sbjct:   180 NLVLAEERGVVIVDDTRDIWPHHKNNLI 207

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2194666 AT1G43610 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 59/147 (40%), Positives = 88/147 (59%)

Query:     6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRS 65
             V ++KKLHLVLDLD TL H+V +  L SK  KYL+++  S  D     +    F++K+R 
Sbjct:    47 VTKKKKLHLVLDLDHTLLHSVLVSDL-SKREKYLLEETDSRQDLWRRNVDGYEFIIKLRP 105

Query:    66 YIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGD 125
             ++ +FL +A+K++ +++ T    SYA  + KL++P   Y    R+ITRE       KS D
Sbjct:   106 FLHEFLLEANKLFTMHVYTMGSSSYAKQVLKLIDPDKVY-FGKRVITRE--ASPFNKSLD 162

Query:   126 LVLRQEWGVVIVDDTEKVWKDHKEHLM 152
             L+   +  VVIVDDT  VW  HK +L+
Sbjct:   163 LLAADKRRVVIVDDTVHVWPFHKRNLL 189

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2194656 AT1G43600 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
 Identities = 58/145 (40%), Positives = 87/145 (60%)

Query:     8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYI 67
             ++KKLHLVLDLD TL H+V +  L SK  KYL+++  S  D     +    F++K+R ++
Sbjct:    15 KKKKLHLVLDLDHTLLHSVLVSDL-SKREKYLLEETDSRQDLWRRNVDGYEFIIKLRPFL 73

Query:    68 RKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLV 127
              +FL +A+K++ +++ T    SYA  + KL++P   Y    R+ITRE       KS DL+
Sbjct:    74 HEFLLEANKLFTMHVYTMGSSSYAKQVLKLIDPDKVY-FGKRVITRE--ASPFNKSLDLL 130

Query:   128 LRQEWGVVIVDDTEKVWKDHKEHLM 152
                +  VVIVDDT  VW  HK +L+
Sbjct:   131 AADKRRVVIVDDTVHVWPFHKRNLL 155

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2154458 AT5G23470 [Arabidopsis thaliana (taxid:3702)]

 Score = 249 (92.7 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 55/144 (38%), Positives = 90/144 (62%)

Query:    10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMA-SELFLVKVRSYIR 68
             KKLHLVLDLDQTL H +   +L   + KY++++  S  D   F     E  L+K+R ++ 
Sbjct:    85 KKLHLVLDLDQTLIHTIKTSLLYESE-KYIIEEVESRKDIKRFNTGFPEESLIKLRPFVH 143

Query:    69 KFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVL 128
             +FLK+ ++M+ +Y+ T     YA ++ ++++P  +++  +R+ITR +    G K+ DLVL
Sbjct:   144 QFLKECNEMFSMYVYTKGGYDYARLVLEMIDPD-KFYFGNRVITRRE--SPGFKTLDLVL 200

Query:   129 RQEWGVVIVDDTEKVWKDHKEHLM 152
               E G+VIVDDT  VW   K++L+
Sbjct:   201 ADERGIVIVDDTSSVWPHDKKNLL 224

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2051164 CPL3 "C-terminal domain phosphatase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 9.3e-24, Sum P(2) = 9.3e-24
 Identities = 55/158 (34%), Positives = 87/158 (55%)

Query:     6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGD---LFKMASELFLVK 62
             ++  +KL LVLD+D TL ++   + + S+  + L K+     +     LF+        K
Sbjct:   922 MFASQKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREKPYRHLFRFLHMGMWTK 981

Query:    63 VRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF------ 116
             +R  I  FL+KASK+Y+++L T   + YA  MAKLL+PK     + R+I++ D       
Sbjct:   982 LRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVL-FNGRVISKGDDGDPLDG 1040

Query:   117 KEKGKKSGDL--VLRQEWGVVIVDDTEKVWKDHKEHLM 152
              E+  KS DL  V+  E  VVI+DD+ +VW  HK +L+
Sbjct:  1041 DERVPKSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLI 1078

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008420 "CTD phosphatase activity" evidence=ISS

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=RCA

TAIR|locus:2012943 AT1G20320 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 63/145 (43%), Positives = 94/145 (64%)

Query:     9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIR 68
             ++KLHLVLDLD TL H++ I  L S+  KYL+ +  S    DL+ +  E+ L+K+R ++ 
Sbjct:    74 ERKLHLVLDLDHTLLHSIMISRL-SEGEKYLLGE--SDFREDLWTLDREM-LIKLRPFVH 129

Query:    69 KFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKG-KKSGDLV 127
             +FLK+A++++ +Y+ T   R YA  + K ++PK  Y    R+ITR+   E G  K+ DLV
Sbjct:   130 EFLKEANEIFSMYVYTMGNRDYAQAVLKWIDPKKVY-FGDRVITRD---ESGFSKTLDLV 185

Query:   128 LRQEWGVVIVDDTEKVWKDHKEHLM 152
             L  E GVVIVDDT  VW DH+ +L+
Sbjct:   186 LADECGVVIVDDTRHVWPDHERNLL 210

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XVIII.3263.1 hypothetical protein (312 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	282
TIGR02250	156	TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph	1e-39
smart00577	148	smart00577, CPDc, catalytic domain of ctd-like pho	2e-28
pfam03031	153	pfam03031, NIF, NLI interacting factor-like phosph	9e-16
TIGR02251	162	TIGR02251, HIF-SF_euk, Dullard-like phosphatase do	3e-07

>gnl|CDD|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain

 Score =  135 bits (342), Expect = 1e-39
 Identities = 60/151 (39%), Positives = 92/151 (60%), Gaps = 5/151 (3%)

Query: 6   VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDL--FKMASELFLVKV 63
           + R+KKLHLVLDLDQTL H    D   S+  KY +++  S +  DL  F + +  +L K+
Sbjct: 1   LLREKKLHLVLDLDQTLIHTT-KDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKL 59

Query: 64  RSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKS 123
           R ++ +FLK+ASK+Y++++ T   R+YA  +AKL++P  +Y    R+I+R++      KS
Sbjct: 60  RPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKY-FGDRIISRDESGSPHTKS 118

Query: 124 -GDLVLRQEWGVVIVDDTEKVWKDHKEHLML 153
              L    E  VVI+DD E VW  HK +L+ 
Sbjct: 119 LLRLFPADESMVVIIDDREDVWPWHKRNLIQ 149

This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156

>gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases

 Score =  106 bits (266), Expect = 2e-28
 Identities = 45/145 (31%), Positives = 72/145 (49%), Gaps = 13/145 (8%)

Query: 10  KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRK 69
           KK  LVLDLD+TL H+         +R +++          L         VK R  + +
Sbjct: 1   KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPV--------LIDGHPHGVYVKKRPGVDE 52

Query: 70  FLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED-FKEKGK--KSGDL 126
           FLK+AS+++++ + T  +R YA  +  LL+PK   +   R + R++    KGK  K   L
Sbjct: 53  FLKRASELFELVVFTAGLRMYADPVLDLLDPK--KYFGYRRLFRDECVFVKGKYVKDLSL 110

Query: 127 VLRQEWGVVIVDDTEKVWKDHKEHL 151
           + R    V+I+DD+   W  H E+L
Sbjct: 111 LNRDLSKVIIIDDSPDSWPFHPENL 135

Length = 148

>gnl|CDD|217328 pfam03031, NIF, NLI interacting factor-like phosphatase

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 19/143 (13%)

Query: 12  LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFL 71
             LVLDLD+TL H+                        D     +    VK R  + +FL
Sbjct: 1   KTLVLDLDETLVHSSF----------------EPDLPFDFVLNFNHGVYVKKRPGLDEFL 44

Query: 72  KKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQE 131
           ++ SK Y+I + T   + YA  +   L+PK +Y      + RE       K   L+ R  
Sbjct: 45  QELSKYYEIVIFTASSKEYADPVLDKLDPKKKYF--KHRLYRESCTFY-VKDLSLLGRDL 101

Query: 132 WGVVIVDDTEKVWKDHKEHLMLL 154
             VVIVD++ + +    ++ + +
Sbjct: 102 SRVVIVDNSPRSFLLQPDNGIPI 124

This family contains a number of NLI interacting factor isoforms and also an N-terminal regions of RNA polymerase II CTC phosphatase and FCP1 serine phosphatase. This region has been identified as the minimal phosphatase domain. Length = 153

>gnl|CDD|233801 TIGR02251, HIF-SF_euk, Dullard-like phosphatase domain

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 31/150 (20%)

Query: 11  KLHLVLDLDQTLPHA--------VDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVK 62
           K  LVLDLD+TL H+         D  +    D K +                     V 
Sbjct: 1   KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIP------------------VYVF 42

Query: 63  VRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-KGK 121
            R ++ +FL++ SK Y++ + T  +  YA  +  +L+   +  IS RL  RE      GK
Sbjct: 43  KRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDRGGKV-ISRRLY-RESCVFTNGK 100

Query: 122 KSGDL--VLRQEWGVVIVDDTEKVWKDHKE 149
              DL  V +    V+I+D++   +    +
Sbjct: 101 YVKDLSLVGKDLSKVIIIDNSPYSYSLQPD 130

This model represents the putative phosphatase domain of a family of eukaryotic proteins including "Dullard" , and the NLI interacting factor (NIF)-like phosphatases. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDNxPxxa) and aparrently lacking the last aspartate. This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the pfam03031. Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
KOG0323	635	consensus TFIIF-interacting CTD phosphatases, incl	100.0
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	100.0
KOG1605	262	consensus TFIIF-interacting CTD phosphatase, inclu	100.0
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	100.0
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	100.0
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	99.97
KOG2832	393	consensus TFIIF-interacting CTD phosphatase, inclu	99.93
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.9
COG5190	390	FCP1 TFIIF-interacting CTD phosphatases, including	99.84
COG5190	390	FCP1 TFIIF-interacting CTD phosphatases, including	99.72
PF12738	63	PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W	99.59
PF00533	78	BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP	99.55
smart00292	80	BRCT breast cancer carboxy-terminal domain.	99.41
cd00027	72	BRCT Breast Cancer Suppressor Protein (BRCA1), car	99.38
KOG3226	508	consensus DNA repair protein [Replication, recombi	99.35
PLN03122	815	Poly [ADP-ribose] polymerase; Provisional	98.93
PLN03123	981	poly [ADP-ribose] polymerase; Provisional	98.84
COG4996	164	Predicted phosphatase [General function prediction	98.57
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	98.4
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	98.32
PRK14350	669	ligA NAD-dependent DNA ligase LigA; Provisional	98.25
PRK06063	313	DNA polymerase III subunit epsilon; Provisional	98.2
KOG1929	811	consensus Nucleotide excision repair factor NEF2,	98.19
KOG1929	811	consensus Nucleotide excision repair factor NEF2,	98.15
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	98.12
PHA03398	303	viral phosphatase superfamily protein; Provisional	98.11
COG0272	667	Lig NAD-dependent DNA ligase (contains BRCT domain	98.1
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	98.08
PRK14351	689	ligA NAD-dependent DNA ligase LigA; Provisional	98.04
PRK06195	309	DNA polymerase III subunit epsilon; Validated	98.01
PRK07956	665	ligA NAD-dependent DNA ligase LigA; Validated	97.99
TIGR00575	652	dnlj DNA ligase, NAD-dependent. The member of this	97.94
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	97.9
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	97.9
COG5275	276	BRCT domain type II [General function prediction o	97.83
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	97.83
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	97.82
KOG3524	850	consensus Predicted guanine nucleotide exchange fa	97.81
KOG2481	570	consensus Protein required for normal rRNA process	97.79
KOG0966	881	consensus ATP-dependent DNA ligase IV [Replication	97.77
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	97.73
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	97.72
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	97.71
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	97.64
PHA02530	300	pseT polynucleotide kinase; Provisional	97.63
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	97.61
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	97.59
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	97.56
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	97.54
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	97.52
KOG3548	1176	consensus DNA damage checkpoint protein RHP9/CRB2/	97.51
KOG2043	896	consensus Signaling protein SWIFT and related BRCT	97.47
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	97.46
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	97.45
PLN02940	382	riboflavin kinase	97.35
PHA02597	197	30.2 hypothetical protein; Provisional	97.34
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	97.24
COG5163	591	NOP7 Protein required for biogenesis of the 60S ri	97.22
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	97.19
PRK08238	479	hypothetical protein; Validated	97.03
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	96.96
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	96.94
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	96.93
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	96.87
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	96.84
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	96.69
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	96.67
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	96.61
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	96.49
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	96.49
PRK09449	224	dUMP phosphatase; Provisional	96.48
PRK06769	173	hypothetical protein; Validated	96.47
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	96.47
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	96.46
COG0546	220	Gph Predicted phosphatases [General function predi	96.44
PRK13288	214	pyrophosphatase PpaX; Provisional	96.34
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	96.22
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	96.16
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	96.08
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	95.99
PRK13222	226	phosphoglycolate phosphatase; Provisional	95.9
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	95.85
PRK14988	224	GMP/IMP nucleotidase; Provisional	95.79
PLN02575	381	haloacid dehalogenase-like hydrolase	95.68
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	95.64
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	95.61
PRK13226	229	phosphoglycolate phosphatase; Provisional	95.61
PRK11587	218	putative phosphatase; Provisional	95.59
PRK10563	221	6-phosphogluconate phosphatase; Provisional	95.58
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	95.57
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	95.55
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	95.53
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	95.47
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	95.37
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	95.23
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	95.07
PRK13223	272	phosphoglycolate phosphatase; Provisional	95.03
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	94.98
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	94.92
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	94.75
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	94.74
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	94.72
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	94.65
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	94.57
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	94.31
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	94.3
PRK13225	273	phosphoglycolate phosphatase; Provisional	93.93
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	93.87
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	93.7
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	93.68
PLN02811	220	hydrolase	93.54
KOG3524	850	consensus Predicted guanine nucleotide exchange fa	93.45
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	93.39
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	93.28
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	93.15
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	93.1
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	93.06
PRK11133	322	serB phosphoserine phosphatase; Provisional	92.97
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	92.8
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	92.75
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	92.74
PRK13582	205	thrH phosphoserine phosphatase; Provisional	92.62
PRK05601	377	DNA polymerase III subunit epsilon; Validated	92.5
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	92.32
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	92.21
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	92.14
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	92.07
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	91.91
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	91.77
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	91.76
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	91.66
PRK10513	270	sugar phosphate phosphatase; Provisional	91.61
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	91.58
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	91.55
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	91.28
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	91.11
KOG0966	881	consensus ATP-dependent DNA ligase IV [Replication	90.91
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	90.37
PRK10444	248	UMP phosphatase; Provisional	90.34
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	89.8
PRK01158	230	phosphoglycolate phosphatase; Provisional	89.64
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	89.44
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	89.12
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	89.04
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	88.49
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	88.47
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	88.4
PLN02645	311	phosphoglycolate phosphatase	88.22
PRK10976	266	putative hydrolase; Provisional	87.78
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	87.63
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	86.99
PLN02423	245	phosphomannomutase	86.85
PRK10748	238	flavin mononucleotide phosphatase; Provisional	86.72
COG4502	180	5'(3')-deoxyribonucleotidase [Nucleotide transport	86.52
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	86.5
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	86.45
COG4359	220	Uncharacterized conserved protein [Function unknow	86.41
PLN02887	580	hydrolase family protein	86.38
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	86.11
PTZ00174	247	phosphomannomutase; Provisional	85.93
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	85.78
PTZ00445	219	p36-lilke protein; Provisional	85.73
COG2503	274	Predicted secreted acid phosphatase [General funct	85.34
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	85.14
PLN02151	354	trehalose-phosphatase	84.91
PLN03017	366	trehalose-phosphatase	84.85
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	84.55
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	84.46
COG0241	181	HisB Histidinol phosphatase and related phosphatas	84.32
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	83.93
PLN02382	413	probable sucrose-phosphatase	83.45
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	83.28
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	82.28
PLN02580	384	trehalose-phosphatase	82.24
PLN02954	224	phosphoserine phosphatase	82.0
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	81.75
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	81.63
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	81.43
PRK11587	218	putative phosphatase; Provisional	80.18

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=100.00  E-value=2.4e-47  Score=368.66  Aligned_cols=272  Identities=30%  Similarity=0.445  Sum_probs=242.2

Q ss_pred             chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcC---CCCCCcceee--cceeEEEEecccHHHHHHHHhcCce
Q 041003            5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRG---SSSDGDLFKM--ASELFLVKVRSYIRKFLKKASKMYD   79 (282)
Q Consensus         5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~---~~~d~~~~~~--~~~~~~v~~RP~l~~FL~~~~~~ye   79 (282)
                      ..+++++|.||+|||+||+|+...+... +++.++.++..   +..|...|+.  ....+|||+||++.+||++++++||
T Consensus       140 ~~~~~~~L~lv~Dld~tllh~~~~~~l~-e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfe  218 (635)
T KOG0323|consen  140 SSLNRKKLHLVLDLDHTLLHTILKSDLS-ETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFE  218 (635)
T ss_pred             HHHhhhcceeehhhhhHHHHhhccchhh-hhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhce
Confidence            4566777899999999999999988777 67777777655   4455555553  2467999999999999999999999


Q ss_pred             EEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceecccccc-ccCCceEEEcCChhhhhhCccCeeeH----
Q 041003           80 IYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVL-RQEWGVVIVDDTEKVWKDHKEHLMLL----  154 (282)
Q Consensus        80 i~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~-~~~~~vvivDd~~~~~~~~~~N~i~i----  154 (282)
                      ++|||+|++.||..|+++|||.+.|| ++||++|++......+||..++ ++.++||||||+++||..++.|+|.|    
T Consensus       219 mhVyTmg~R~YA~~i~~liDP~~~lF-~dRIisrde~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~  297 (635)
T KOG0323|consen  219 MHVYTMGTRDYALEIAKLIDPEGKYF-GDRIISRDESPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYP  297 (635)
T ss_pred             eEEEeccchHHHHHHHHHhCCCCccc-cceEEEecCCCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeee
Confidence            99999999999999999999999999 9999999997766778888887 48899999999999999887799887    


Q ss_pred             --------------------------------------------------------------------------------
Q 041003          155 --------------------------------------------------------------------------------  154 (282)
Q Consensus       155 --------------------------------------------------------------------------------  154 (282)
                                                                                                      
T Consensus       298 yF~~~gd~nap~~~~~~~~~~~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  377 (635)
T KOG0323|consen  298 YFSGQGDINAPPPLHVLRNVACSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEEN  377 (635)
T ss_pred             cccCcccccCCcccccccchhcccccccccccCcccccccccccccccccccCcccccccccccCccccccccccccccc
Confidence                                                                                            


Q ss_pred             -------------------HHHHHHHHHHHhHhhcccccCC-------CCCcccccccchhheeecceeEEeeccCCCCc
Q 041003          155 -------------------NGALVNVLRVMKTVHGLFFENP-------VCGDVRCFLGKIQRQILVRCTLFFSRDVDDKE  208 (282)
Q Consensus       155 -------------------D~~L~~l~~~L~~i~~~ff~~~-------~~~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~  208 (282)
                                         |.+|..++++|+.+|..||..+       ..+|||.+++++|..+++||.++|||..|.+.
T Consensus       378 ~~~~~~~s~~~~~~de~~~D~~L~~~~kvl~~vH~~ff~~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~  457 (635)
T KOG0323|consen  378 APEARSGSYREKKSDESDEDGELANLLKVLKPVHKGFFAKYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGS  457 (635)
T ss_pred             chhhcccccccccccccccchhHHHHhhhhcccchhhhhccccccccccCCChhhhhhhhhhHHhhccceeecccccCcC
Confidence                               4679999999999999999864       57999999999999999999999999999875


Q ss_pred             -cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCC-CceecHHHHHHHHHhCCcCCCCCCC
Q 041003          209 -FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHN-KFLVHPQWIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       209 -~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~g-i~IV~~~WL~~c~~~~~r~~E~~y~  280 (282)
                       ........++..+||..+++++..+||+|+.  +.+|.|+.+|...+ ++||++.|++.|+..|.+++|..|.
T Consensus       458 ~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~--~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~  529 (635)
T KOG0323|consen  458 TDESADILGVAQQLGAVSAPDVSDKTTHLIAA--NAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEP  529 (635)
T ss_pred             CcchhhhhhhhhcccceecccccchhhhHHhh--ccCcceeeccccccceeEechhHHHHHHHHhcchhccccc
Confidence             4556777889999999999999999999999  99999999998865 9999999999999999999999885

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=100.00  E-value=3.8e-37  Score=255.10  Aligned_cols=147  Identities=38%  Similarity=0.590  Sum_probs=126.7

Q ss_pred             hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhh--hcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEE
Q 041003            6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMK--QRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLC   83 (282)
Q Consensus         6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~   83 (282)
                      |++++|++||||||||||||+..+..+ ....+...  +.+..++...|.+++..+++++|||+.+||+++++.||++||
T Consensus         1 ~~~~~kl~LVLDLDeTLihs~~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~   79 (156)
T TIGR02250         1 LLREKKLHLVLDLDQTLIHTTKDPTLS-EWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVY   79 (156)
T ss_pred             CCcCCceEEEEeCCCCcccccccCccc-hhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEE
Confidence            678999999999999999999887554 22221111  112234566777788899999999999999999999999999


Q ss_pred             cCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccc-cccCCceEEEcCChhhhhhCccCeeeH
Q 041003           84 TTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLV-LRQEWGVVIVDDTEKVWKDHKEHLMLL  154 (282)
Q Consensus        84 T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l-~~~~~~vvivDd~~~~~~~~~~N~i~i  154 (282)
                      |++.+.||++|++.|||.+.+| ++|+++|++|.+.+.|||+.+ +++++++|||||++++|..||+|+|+|
T Consensus        80 T~~~~~yA~~vl~~ldp~~~~F-~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i  150 (156)
T TIGR02250        80 TMGTRAYAQAIAKLIDPDGKYF-GDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQI  150 (156)
T ss_pred             eCCcHHHHHHHHHHhCcCCCee-ccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEe
Confidence            9999999999999999999999 899999999999999999765 569999999999999999999999987

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=100.00  E-value=9.4e-38  Score=275.60  Aligned_cols=163  Identities=23%  Similarity=0.328  Sum_probs=138.9

Q ss_pred             chhcCCCeeEEEeCCCceeeeec-cCccchhhHHhhhhhcCCCCCCcceee--cceeEEEEecccHHHHHHHHhcCceEE
Q 041003            5 MVYRQKKLHLVLDLDQTLPHAVD-IDILASKDRKYLMKQRGSSSDGDLFKM--ASELFLVKVRSYIRKFLKKASKMYDIY   81 (282)
Q Consensus         5 ~l~~~~kl~LVLDLD~TLihs~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~v~~RP~l~~FL~~~~~~yei~   81 (282)
                      ++-..+|++|||||||||+||+. .+... ..+           ......+  ....+||.+|||+++||..++++||++
T Consensus        83 ~~~~~~kk~lVLDLDeTLvHss~~~~~~~-~~d-----------~~~~v~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v  150 (262)
T KOG1605|consen   83 RLATVGRKTLVLDLDETLVHSSLNLKPIV-NAD-----------FTVPVEIDGHIHQVYVRKRPHVDEFLSRVSKWYELV  150 (262)
T ss_pred             ccccCCCceEEEeCCCcccccccccCCCC-Ccc-----------eeeeeeeCCcceEEEEEcCCCHHHHHHHhHHHHHHH
Confidence            45578899999999999999985 21111 000           0111222  246799999999999999999999999


Q ss_pred             EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH----
Q 041003           82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL----  154 (282)
Q Consensus        82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i----  154 (282)
                      +||++.+.||.+|++.|||.+++| .+| ++|++|..   .++|||+.+++++++|+||||+|.+|..||+|+|||    
T Consensus       151 ~FTAs~~~Ya~~v~D~LD~~~~i~-~~R-lyR~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~  228 (262)
T KOG1605|consen  151 LFTASLEVYADPLLDILDPDRKII-SHR-LYRDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWF  228 (262)
T ss_pred             HHHhhhHHHHHHHHHHccCCCCee-eee-ecccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccc
Confidence            999999999999999999988888 666 88999974   899999999999999999999999999999999999    


Q ss_pred             ----HHHHHHHHHHHhHhhcccccCCCCCcccccccch
Q 041003          155 ----NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKI  188 (282)
Q Consensus       155 ----D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~  188 (282)
                          |+||++|+|||+++.       ..+|||.+++..
T Consensus       229 ~d~~D~eLL~LlpfLe~L~-------~~~Dvr~~l~~~  259 (262)
T KOG1605|consen  229 DDPTDTELLKLLPFLEALA-------FVDDVRPILARR  259 (262)
T ss_pred             cCCChHHHHHHHHHHHHhc-------ccccHHHHHHHh
Confidence                999999999999999       459999998763

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=100.00  E-value=1.7e-35  Score=247.11  Aligned_cols=148  Identities=24%  Similarity=0.255  Sum_probs=125.2

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSY   90 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Y   90 (282)
                      |++||||||||||||+..+... ..+..+         ...+.....++||++|||+.+||+++++.|||+|||+|++.|
T Consensus         1 k~~lvlDLDeTLi~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~y   70 (162)
T TIGR02251         1 KKTLVLDLDETLVHSTFKMPKV-DADFKV---------PVLIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEY   70 (162)
T ss_pred             CcEEEEcCCCCcCCCCCCCCCC-CCceEE---------EEEecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHH
Confidence            6899999999999997754211 000000         000111256899999999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCcccccccEEEccCCC---CCceeccccccccCCceEEEcCChhhhhhCccCeeeH--------HHHHH
Q 041003           91 AMMMAKLLNPKCEYHISSRLITREDFK---EKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------NGALV  159 (282)
Q Consensus        91 a~~v~~~ldp~~~~f~~~rv~~r~~~~---~~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i--------D~~L~  159 (282)
                      |++|++.|||.+.+|  +.+++|++|.   +.+.|+|+.++++++++|+|||++..|..+++|+|+|        |++|.
T Consensus        71 A~~il~~ldp~~~~f--~~~l~r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~~~~~D~~L~  148 (162)
T TIGR02251        71 ADPVLDILDRGGKVI--SRRLYRESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTELL  148 (162)
T ss_pred             HHHHHHHHCcCCCEE--eEEEEccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCCCCCCHHHHH
Confidence            999999999998888  5668899996   3689999999999999999999999999999999999        99999


Q ss_pred             HHHHHHhHhhc
Q 041003          160 NVLRVMKTVHG  170 (282)
Q Consensus       160 ~l~~~L~~i~~  170 (282)
                      .|+++|+.|..
T Consensus       149 ~l~~~L~~l~~  159 (162)
T TIGR02251       149 NLIPFLEGLRF  159 (162)
T ss_pred             HHHHHHHHHhc
Confidence            99999999984

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=100.00  E-value=5e-34  Score=236.95  Aligned_cols=147  Identities=29%  Similarity=0.370  Sum_probs=115.4

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYA   91 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya   91 (282)
                      ++|||||||||||+...+... .             +..... ....+++++|||+++||++++++||++|||+|++.||
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~-~-------------~~~~~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya   65 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLP-Y-------------DFKIID-QRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYA   65 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT---------------SEEEET-EEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHH
T ss_pred             CEEEEeCCCcEEEEeecCCCC-c-------------ccceec-cccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhh
Confidence            589999999999998764321 0             000001 3467899999999999999999999999999999999


Q ss_pred             HHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH---------HHHHH
Q 041003           92 MMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL---------NGALV  159 (282)
Q Consensus        92 ~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i---------D~~L~  159 (282)
                      .+|++.|||.+.+|  .++++|++|..   .+.|||++++++++++|+|||++.+|..+++|+|+|         |++|.
T Consensus        66 ~~v~~~ldp~~~~~--~~~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~~~~~~D~~L~  143 (159)
T PF03031_consen   66 EPVLDALDPNGKLF--SRRLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFFGDTPNDRELL  143 (159)
T ss_dssp             HHHHHHHTTTTSSE--EEEEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----SSCHTT--HHH
T ss_pred             hHHHHhhhhhcccc--ccccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEeccccCCCcchhHHH
Confidence            99999999998888  66789999962   357999999999999999999999999899999999         88999


Q ss_pred             HHHHHHhHhhcccccCCCCCccc
Q 041003          160 NVLRVMKTVHGLFFENPVCGDVR  182 (282)
Q Consensus       160 ~l~~~L~~i~~~ff~~~~~~dvr  182 (282)
                      .++++|++++       ..+|||
T Consensus       144 ~l~~~L~~l~-------~~~Dvr  159 (159)
T PF03031_consen  144 RLLPFLEELA-------KEDDVR  159 (159)
T ss_dssp             HHHHHHHHHH-------THS-CH
T ss_pred             HHHHHHHHhC-------cccCCC
Confidence            9999999999       458887

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=99.97  E-value=1.3e-31  Score=228.40  Aligned_cols=146  Identities=18%  Similarity=0.170  Sum_probs=121.1

Q ss_pred             hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcC
Q 041003            6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTT   85 (282)
Q Consensus         6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~   85 (282)
                      ....+|++|||||||||||+.+..                           .+.++.+|||+++||+.++++|||+|||+
T Consensus        16 ~~~~~kklLVLDLDeTLvh~~~~~---------------------------~~~~~~kRP~l~eFL~~~~~~feIvVwTA   68 (195)
T TIGR02245        16 PPREGKKLLVLDIDYTLFDHRSPA---------------------------ETGEELMRPYLHEFLTSAYEDYDIVIWSA   68 (195)
T ss_pred             CCCCCCcEEEEeCCCceEcccccC---------------------------CCceEEeCCCHHHHHHHHHhCCEEEEEec
Confidence            346789999999999999975321                           12367899999999999999999999999


Q ss_pred             CcHHHHHHHHhhhcCCCc-ccccccEEEccCCC---------C-Cceeccccccc------cCCceEEEcCChhhhhhCc
Q 041003           86 RIRSYAMMMAKLLNPKCE-YHISSRLITREDFK---------E-KGKKSGDLVLR------QEWGVVIVDDTEKVWKDHK  148 (282)
Q Consensus        86 ~~~~Ya~~v~~~ldp~~~-~f~~~rv~~r~~~~---------~-~~~KdL~~l~~------~~~~vvivDd~~~~~~~~~  148 (282)
                      +++.||+++++.|++.+. -+ +- .+.+++|.         + ..+|||+.+.+      +++++|||||+|.++..||
T Consensus        69 a~~~ya~~~l~~l~~~~~~~~-~i-~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P  146 (195)
T TIGR02245        69 TSMKWIEIKMTELGVLTNPNY-KI-TFLLDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNP  146 (195)
T ss_pred             CCHHHHHHHHHHhcccCCccc-eE-EEEeccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCC
Confidence            999999999999976431 12 11 24567763         1 24899998742      7899999999999999999


Q ss_pred             cCeeeH------------HHHHHHHHHHHhHhhcccccCCCCCcccccccc
Q 041003          149 EHLMLL------------NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGK  187 (282)
Q Consensus       149 ~N~i~i------------D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~  187 (282)
                      +|+|+|            |++|..|+++|+.|+       ..+|||++...
T Consensus       147 ~N~i~I~~f~~~~~~~~~D~eL~~L~~yL~~la-------~~~Dvr~~~~~  190 (195)
T TIGR02245       147 QNGLKIRPFKKAHANRGTDQELLKLTQYLKTIA-------ELEDFSSLDHK  190 (195)
T ss_pred             CCccccCCccccCCCCcccHHHHHHHHHHHHHh-------cCcccchhhhc
Confidence            999999            899999999999999       68999998864

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=99.93  E-value=1.5e-26  Score=208.56  Aligned_cols=149  Identities=23%  Similarity=0.246  Sum_probs=134.9

Q ss_pred             cCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCc
Q 041003            8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRI   87 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~   87 (282)
                      .+.++||||||.++|||..|.-.                          .+|.+++|||++.||..++++|||+|||+..
T Consensus       186 ~Qp~yTLVleledvLVhpdws~~--------------------------tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~  239 (393)
T KOG2832|consen  186 EQPPYTLVLELEDVLVHPDWSYK--------------------------TGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQ  239 (393)
T ss_pred             cCCCceEEEEeeeeEeccchhhh--------------------------cCceeccCchHHHHHHhhcccceEEEEecCC
Confidence            46789999999999999988532                          2478999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH--------HH
Q 041003           88 RSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------NG  156 (282)
Q Consensus        88 ~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i--------D~  156 (282)
                      ..||.++++.|||.|.+  +++ +.|++|..   +.+|||+.|+||+++||+||-++.+...||+|.|++        |+
T Consensus       240 gmt~~pl~d~lDP~g~I--sYk-Lfr~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~Gn~dDt  316 (393)
T KOG2832|consen  240 GMTVFPLLDALDPKGYI--SYK-LFRGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWSGNDDDT  316 (393)
T ss_pred             ccchhhhHhhcCCcceE--EEE-EecCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCCCCcccc
Confidence            99999999999999843  677 45999874   789999999999999999999999999999999999        78


Q ss_pred             HHHHHHHHHhHhhcccccCCCCCcccccccchhh
Q 041003          157 ALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQR  190 (282)
Q Consensus       157 ~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~r~  190 (282)
                      .|.+|++||+.||+.     +.+|||++|+.+..
T Consensus       317 ~L~dL~~FL~~ia~~-----~~eDvR~vL~~y~~  345 (393)
T KOG2832|consen  317 SLFDLLAFLEYIAQQ-----QVEDVRPVLQSYSQ  345 (393)
T ss_pred             hhhhHHHHHHHHHHc-----cHHHHHHHHHHhcc
Confidence            999999999999974     88999999998753

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.90  E-value=2.3e-23  Score=171.27  Aligned_cols=133  Identities=31%  Similarity=0.371  Sum_probs=109.2

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcc--eeecceeEEEEecccHHHHHHHHhcCceEEEEcCCc
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDL--FKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRI   87 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~   87 (282)
                      ||++|||||||||+|++..+..+  ..        .......  +......+++++|||+.+||+++.+.|+++|||++.
T Consensus         1 ~k~~lvldld~tl~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~   70 (148)
T smart00577        1 KKKTLVLDLDETLVHSTHRSFKE--WT--------NRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGL   70 (148)
T ss_pred             CCcEEEEeCCCCeECCCCCcCCC--CC--------ccceEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCc
Confidence            68999999999999997532111  00        0001111  222356789999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH
Q 041003           88 RSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL  154 (282)
Q Consensus        88 ~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i  154 (282)
                      +.||+.+++.+++...+|  ++++++++|..   .+.|+|++++.+++++|+|||++..|..++.|+|+|
T Consensus        71 ~~~~~~il~~l~~~~~~f--~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i  138 (148)
T smart00577       71 RMYADPVLDLLDPKKYFG--YRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPI  138 (148)
T ss_pred             HHHHHHHHHHhCcCCCEe--eeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEe
Confidence            999999999999976556  88999999963   578899999999999999999999999999999987

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=99.84  E-value=2.1e-21  Score=179.75  Aligned_cols=159  Identities=25%  Similarity=0.276  Sum_probs=133.9

Q ss_pred             CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceee--cceeEEEEecccHHHHHHHHhcCceEEEEcCC
Q 041003            9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKM--ASELFLVKVRSYIRKFLKKASKMYDIYLCTTR   86 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~   86 (282)
                      ..+.+|++|||+||+|+....... . + .          ...+..  ....+||.+||++++|+..++++|++++||++
T Consensus       210 ~~~k~L~l~lde~l~~S~~~~~~~-~-d-f----------~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s  276 (390)
T COG5190         210 SPKKTLVLDLDETLVHSSFRYITL-L-D-F----------LVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTAS  276 (390)
T ss_pred             CCccccccCCCccceeeccccccc-c-c-h----------hhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecc
Confidence            457899999999999998753222 0 0 0          011111  23679999999999999999999999999999


Q ss_pred             cHHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH--------H
Q 041003           87 IRSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL--------N  155 (282)
Q Consensus        87 ~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i--------D  155 (282)
                      .+.||++|++.||+.+ .| +++ ++|++|..   .++|||..+++++..++|||++|.+|..+|+|+|+|        |
T Consensus       277 ~~~y~~~v~d~l~~~k-~~-~~~-lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~~d~~d  353 (390)
T COG5190         277 VKRYADPVLDILDSDK-VF-SHR-LFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWISDEHD  353 (390)
T ss_pred             hhhhcchHHHhccccc-ee-ehh-hhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCcccccccc
Confidence            9999999999999999 56 555 66999974   688999999999999999999999999999999999        8


Q ss_pred             HHHHHHHHHHhHhhcccccCCCCCcccccccch
Q 041003          156 GALVNVLRVMKTVHGLFFENPVCGDVRCFLGKI  188 (282)
Q Consensus       156 ~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~  188 (282)
                      .+|..++++|+.|..+     +..||+.++...
T Consensus       354 ~el~~ll~~le~L~~~-----~~~d~~~~l~~~  381 (390)
T COG5190         354 DELLNLLPFLEDLPDR-----DLKDVSSILQSR  381 (390)
T ss_pred             hhhhhhcccccccccc-----cchhhhhhhhhh
Confidence            9999999999999853     688998888653

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=99.72  E-value=6.1e-18  Score=156.78  Aligned_cols=241  Identities=22%  Similarity=0.251  Sum_probs=179.1

Q ss_pred             ccchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhh-hcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEE
Q 041003            3 SEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMK-QRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIY   81 (282)
Q Consensus         3 ~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~   81 (282)
                      +++|-+++++.||.|+|.|.+||...+..+ .+.+.... ...+..+ ..+......++++.||++..|+...++.||++
T Consensus        18 ~~~l~q~~~~~l~~~~~~~~~h~~~~~~~p-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~   95 (390)
T COG5190          18 MEALRQDKKLILVVDLDQTIIHTTVDPNDP-NNVNQSLERTLKSVND-RDPVQEKCAYYVKARPKLFPFLTKISPLYELH   95 (390)
T ss_pred             HHHhhcCcccccccccccceecccccCCCC-Cchhhhhhccccchhc-cccccccccceeeecccccchhhhhchhccee
Confidence            467788899999999999999999887222 22221100 0011111 11222357899999999999999999999999


Q ss_pred             EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccc-cCCceEEEcCChhhh---hhCccCeeeH---
Q 041003           82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLR-QEWGVVIVDDTEKVW---KDHKEHLMLL---  154 (282)
Q Consensus        82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~-~~~~vvivDd~~~~~---~~~~~N~i~i---  154 (282)
                      +||+|++.||..+++++||.|.+| .+|+..|+.......|.++++++ +.+.+++.||.+++|   ..+ .|.++.   
T Consensus        96 ~~~~~~~~~~~~~~~i~d~~g~~~-~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~~-~~~v~~~~~  173 (390)
T COG5190          96 IYTMGTRAYAERIAKIIDPTGKLF-NDRILSRDESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDMN-SNFVAKSPF  173 (390)
T ss_pred             eEeeccccchhhhhhccccccccc-ccccccccccccchhhhhhhcCccccccccccccccccCCccchh-hhhhccccc
Confidence            999999999999999999999999 99999999988888899999885 899999999999999   211 233332   


Q ss_pred             --------------------------------------------------------------------------------
Q 041003          155 --------------------------------------------------------------------------------  154 (282)
Q Consensus       155 --------------------------------------------------------------------------------  154 (282)
                                                                                                      
T Consensus       174 ~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~k  253 (390)
T COG5190         174 SKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSK  253 (390)
T ss_pred             ccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcC
Confidence                                                                                            


Q ss_pred             HHHHHHHHHHHhHhhcccccCC----CCCcccccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccC
Q 041003          155 NGALVNVLRVMKTVHGLFFENP----VCGDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYN  230 (282)
Q Consensus       155 D~~L~~l~~~L~~i~~~ff~~~----~~~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~  230 (282)
                      |.+|..++..|.++|+-+|...    -...|..+|...+  +|++|.+-+++..+.+.    .++.+ ...|      .+
T Consensus       254 Rp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~----~ikDi-s~i~------r~  320 (390)
T COG5190         254 RPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGV----YIKDI-SKIG------RS  320 (390)
T ss_pred             ChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCc----hhhhH-Hhhc------cC
Confidence            6789999999999998666443    2233777777766  99999999998877661    22222 2222      34


Q ss_pred             CCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003          231 LSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA  266 (282)
Q Consensus       231 ~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~  266 (282)
                      -.-||+|..  ++.+.    +..-.+.|+.+.|+.+
T Consensus       321 l~~viiId~--~p~SY----~~~p~~~i~i~~W~~d  350 (390)
T COG5190         321 LDKVIIIDN--SPASY----EFHPENAIPIEKWISD  350 (390)
T ss_pred             CCceEEeeC--Chhhh----hhCccceeccCccccc
Confidence            456899988  66554    3333568999999997

>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A

Probab=99.59  E-value=3.2e-15  Score=105.02  Aligned_cols=63  Identities=17%  Similarity=0.195  Sum_probs=54.2

Q ss_pred             eeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHH
Q 041003          196 CTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQW  263 (282)
Q Consensus       196 ~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~W  263 (282)
                      |+|+|||+.+.+   +..++++++.+||++..+++.++||||+.  +..++|++.|.++|++||+|+|
T Consensus         1 ~~i~~sg~~~~~---~~~l~~~i~~~Gg~~~~~lt~~~THLI~~--~~~~~K~~~A~~~gi~vV~~~W   63 (63)
T PF12738_consen    1 VVICFSGFSGKE---RSQLRKLIEALGGKYSKDLTKKTTHLICS--SPEGKKYRKAKEWGIPVVSPDW   63 (63)
T ss_dssp             -EEEEEEB-TTT---CCHHHHHHHCTT-EEESSSSTT-SEEEEE--S--HHHHHHHHHCTSEEEEHHH
T ss_pred             CEEEECCCCHHH---HHHHHHHHHHCCCEEeccccCCceEEEEe--CCCcHHHHHHHHCCCcEECCCC
Confidence            689999987654   78999999999999999999999999998  8999999999999999999999

>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1

Probab=99.55  E-value=1.4e-14  Score=105.20  Aligned_cols=77  Identities=19%  Similarity=0.244  Sum_probs=67.0

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHH
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAY  268 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~  268 (282)
                      +..+|+||.+++++. +.  .++..+.++++.+||++...+++.+||+|+......+.|+..|...|++||+++||.+|+
T Consensus         2 ~~~~F~g~~f~i~~~-~~--~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci   78 (78)
T PF00533_consen    2 KPKIFEGCTFCISGF-DS--DEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI   78 (78)
T ss_dssp             STTTTTTEEEEESST-SS--SHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred             CCCCCCCEEEEEccC-CC--CCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence            467899999999655 33  358889999999999999999999999999932248899999999999999999999996

The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....

>smart00292 BRCT breast cancer carboxy-terminal domain

Probab=99.41  E-value=1.2e-12  Score=94.06  Aligned_cols=79  Identities=18%  Similarity=0.122  Sum_probs=64.0

Q ss_pred             eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCC-CccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNL-SVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~-~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      .+|+|++++|+|..+.  .....+++++..+||++...+++ ++||+|+.+......++..|...+++||+++|+.+|+.
T Consensus         1 ~~f~g~~~~~~g~~~~--~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~   78 (80)
T smart00292        1 KLFKGKVFVITGKFDK--NERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCLK   78 (80)
T ss_pred             CccCCeEEEEeCCCCC--ccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHHH
Confidence            3799999999993222  45889999999999999999998 99999999422223335677788999999999999987


Q ss_pred             hC
Q 041003          270 LW  271 (282)
Q Consensus       270 ~~  271 (282)
                      .+
T Consensus        79 ~~   80 (80)
T smart00292       79 AG   80 (80)
T ss_pred             Cc
Confidence            53

>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain

Probab=99.38  E-value=2.6e-12  Score=90.30  Aligned_cols=71  Identities=18%  Similarity=0.123  Sum_probs=60.9

Q ss_pred             ceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHH-HHHHHHCCCceecHHHHHHHHH
Q 041003          195 RCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKG-HRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       195 G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K-~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      ||.++|+|..+.  .++..+.++++.+||++...+++.+||+|+.  +....+ +..|...|++||+++||.+|++
T Consensus         1 ~~~~~i~g~~~~--~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~--~~~~~~~~~~~~~~~~~iV~~~Wi~~~~~   72 (72)
T cd00027           1 GLTFVITGDLPS--EERDELKELIEKLGGKVTSSVSKKTTHVIVG--SDAGPKKLLKAIKLGIPIVTPEWLLDCLK   72 (72)
T ss_pred             CCEEEEEecCCC--cCHHHHHHHHHHcCCEEeccccCCceEEEEC--CCCCchHHHHHHHcCCeEecHHHHHHHhC
Confidence            789999998743  3588999999999999999999999999999  444333 7778889999999999999973

The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.

>KOG3226 consensus DNA repair protein [Replication, recombination and repair]

Probab=99.35  E-value=6.5e-13  Score=120.30  Aligned_cols=85  Identities=19%  Similarity=0.202  Sum_probs=80.2

Q ss_pred             eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHHh
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYL  270 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~  270 (282)
                      ++|.|+++++||+..   |.++.|+..|..+||++..+++..+|||||+  .++|.||.+...+|-.||+-+||++|.+.
T Consensus       316 klL~GVV~VlSGfqN---P~Rs~LRskAl~LGAkY~pDW~~gsThLICA--F~NTPKy~QV~g~Gg~IV~keWI~~Cy~~  390 (508)
T KOG3226|consen  316 KLLEGVVFVLSGFQN---PERSTLRSKALTLGAKYQPDWNAGSTHLICA--FPNTPKYRQVEGNGGTIVSKEWITECYAQ  390 (508)
T ss_pred             HhhhceEEEEecccC---chHHHHHHHHHhhcccccCCcCCCceeEEEe--cCCCcchhhcccCCceEeeHHHHHHHHHH
Confidence            699999999999854   5699999999999999999999999999999  99999999999999999999999999999


Q ss_pred             CCcCCCCCCC
Q 041003          271 WSRQVEKDYF  280 (282)
Q Consensus       271 ~~r~~E~~y~  280 (282)
                      ++++|-..|.
T Consensus       391 kk~lp~rrYl  400 (508)
T KOG3226|consen  391 KKLLPIRRYL  400 (508)
T ss_pred             HhhccHHHHH
Confidence            9999988775

>PLN03122 Poly [ADP-ribose] polymerase; Provisional

Probab=98.93  E-value=2.6e-09  Score=108.07  Aligned_cols=89  Identities=12%  Similarity=0.054  Sum_probs=78.3

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCC---CCcHHHHHHHHCCCceecHHHHH
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR---LGIKGHRLAEQHNKFLVHPQWIY  265 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~---~~t~K~~~A~~~gi~IV~~~WL~  265 (282)
                      ...+|.|++|+|||.++.   .+..+..+++.+||++++++ +++||+|+++.+   .++.|+..|.+.||+||+.+||.
T Consensus       186 ~~kpL~G~~fviTGtl~~---sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~  261 (815)
T PLN03122        186 PGKPFSGMMISLSGRLSR---THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLI  261 (815)
T ss_pred             cCCCcCCcEEEEeCCCCC---CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHH
Confidence            456899999999999865   37899999999999999999 778899998533   34689999999999999999999


Q ss_pred             HHHHhCCcCCCCCCCC
Q 041003          266 AAYYLWSRQVEKDYFP  281 (282)
Q Consensus       266 ~c~~~~~r~~E~~y~~  281 (282)
                      +|+...+.++|..|..
T Consensus       262 d~i~~~k~~~~~~y~l  277 (815)
T PLN03122        262 DSIEKQEAQPLEAYDV  277 (815)
T ss_pred             HHHhcCCcccchhhhh
Confidence            9999999999998864

>PLN03123 poly [ADP-ribose] polymerase; Provisional

Probab=98.84  E-value=5.5e-09  Score=107.77  Aligned_cols=89  Identities=11%  Similarity=0.050  Sum_probs=78.0

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCC-CCCcHHHHHHHHCCCceecHHHHHHH
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSS-RLGIKGHRLAEQHNKFLVHPQWIYAA  267 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~-~~~t~K~~~A~~~gi~IV~~~WL~~c  267 (282)
                      ...+|.|++|+++|.++..   ...+.+.++.+||++++.+++.+||||+..+ +..+.|+.+|.+.||+||+.+||.+|
T Consensus       390 ~~~~l~~~~i~i~G~~~~~---~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds  466 (981)
T PLN03123        390 ESEFLGDLKVSIVGASKEK---VTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDC  466 (981)
T ss_pred             cCCCcCCeEEEEecCCCCc---HHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHH
Confidence            4578999999999988653   5778899999999999999999999998842 24578899999999999999999999


Q ss_pred             HHhCCcCCCCCCC
Q 041003          268 YYLWSRQVEKDYF  280 (282)
Q Consensus       268 ~~~~~r~~E~~y~  280 (282)
                      ....+++|+..|.
T Consensus       467 ~~~~~~~p~~~y~  479 (981)
T PLN03123        467 FKKKKKLPFDKYK  479 (981)
T ss_pred             HhccccCcchhhh
Confidence            9999999988773

>COG4996 Predicted phosphatase [General function prediction only]

Probab=98.57  E-value=1.4e-07  Score=74.70  Aligned_cols=124  Identities=19%  Similarity=0.169  Sum_probs=86.3

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceee-cceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKM-ASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      .+|+|+|+||+.....+.+.||....           ....+ ++.+.-+.++|++.+||+++.. -|-+..+|+....-
T Consensus         2 ~i~~d~d~t~wdhh~iSsl~pPf~rV-----------s~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~k   70 (164)
T COG4996           2 AIVFDADKTLWDHHNISSLEPPFRRV-----------SSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDK   70 (164)
T ss_pred             cEEEeCCCcccccccchhcCCcceec-----------CccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHH
Confidence            47999999999987776555443321           11112 3456789999999999999985 58889999999999


Q ss_pred             HHHHHhhhcCCCcccccccEEEccCCCC--Cceecccccc--c----cCCceEEEcCCh----hhhhhCccCe
Q 041003           91 AMMMAKLLNPKCEYHISSRLITREDFKE--KGKKSGDLVL--R----QEWGVVIVDDTE----KVWKDHKEHL  151 (282)
Q Consensus        91 a~~v~~~ldp~~~~f~~~rv~~r~~~~~--~~~KdL~~l~--~----~~~~vvivDd~~----~~~~~~~~N~  151 (282)
                      |-+++..||-.. ||  +-++...+..+  +..+=|..+.  +    .++++|.+||+.    +.|. +.+|+
T Consensus        71 A~~aLral~~~~-yF--hy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe-~~G~V  139 (164)
T COG4996          71 AIKALRALDLLQ-YF--HYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWE-YLGNV  139 (164)
T ss_pred             HHHHHHHhchhh-hE--EEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHH-hcCCe
Confidence            999999999887 67  43343444322  1222222232  2    479999999998    6665 34544

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=98.40  E-value=1.3e-06  Score=73.61  Aligned_cols=133  Identities=13%  Similarity=0.041  Sum_probs=83.7

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCC-cHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTR-IRS   89 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~-~~~   89 (282)
                      ..+|+|||.||+.....+-..++....     +..   .-.-......-+.++||+.++|+.+. +.+.+.|-|++ .+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~   74 (174)
T TIGR01685         3 RVIVFDLDGTLWDHYMISLLGGPFKPV-----KQN---NSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPE   74 (174)
T ss_pred             cEEEEeCCCCCcCcccccccCCCceec-----cCC---CCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChH
Confidence            357999999999988765433221100     000   00011123346788999999999996 56999999988 999


Q ss_pred             HHHHHHhhhcCC--C------cccccccEEEccCCCC-Cc----eeccccc---cccCCceEEEcCChhhhhhCccCeee
Q 041003           90 YAMMMAKLLNPK--C------EYHISSRLITREDFKE-KG----KKSGDLV---LRQEWGVVIVDDTEKVWKDHKEHLML  153 (282)
Q Consensus        90 Ya~~v~~~ldp~--~------~~f~~~rv~~r~~~~~-~~----~KdL~~l---~~~~~~vvivDd~~~~~~~~~~N~i~  153 (282)
                      ++..+++.++-.  +      .+|  +.+++-++... ..    .+.+...   +-+.+++++|||++.-...-..+++.
T Consensus        75 ~~~~~L~~~~l~~~~~~~~~~~~F--d~iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~  152 (174)
T TIGR01685        75 WAYEILGTFEITYAGKTVPMHSLF--DDRIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVT  152 (174)
T ss_pred             HHHHHHHhCCcCCCCCcccHHHhc--eeeeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCE
Confidence            999999998754  2      467  44555444321 11    1122222   24679999999999655433455554


Q ss_pred             H
Q 041003          154 L  154 (282)
Q Consensus       154 i  154 (282)
                      +
T Consensus       153 ~  153 (174)
T TIGR01685       153 S  153 (174)
T ss_pred             E
Confidence            4

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=98.32  E-value=5.6e-07  Score=71.99  Aligned_cols=107  Identities=19%  Similarity=0.116  Sum_probs=70.3

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCC-cHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTR-IRSY   90 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~-~~~Y   90 (282)
                      .+|+|||+||+......... .          ...+        ..   +..||+.++|+.+. +.+.++|.|++ .+.|
T Consensus         2 li~~DlD~Tl~~~~~~~~~~-~----------~~~~--------~~---~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~   59 (128)
T TIGR01681         2 VIVFDLDNTLWTGENIVVGE-D----------PIID--------LE---VTIKEIRDKLQTLKKNGFLLALASYNDDPHV   59 (128)
T ss_pred             EEEEeCCCCCCCCCcccccC-C----------cchh--------hH---HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHH
Confidence            57999999999774311000 0          0000        01   57899999999996 46999999999 9999


Q ss_pred             HHHHHhhhcC------CCcccccccEEEccCCCC--Cceecccccc--ccCCceEEEcCChhh
Q 041003           91 AMMMAKLLNP------KCEYHISSRLITREDFKE--KGKKSGDLVL--RQEWGVVIVDDTEKV  143 (282)
Q Consensus        91 a~~v~~~ldp------~~~~f~~~rv~~r~~~~~--~~~KdL~~l~--~~~~~vvivDd~~~~  143 (282)
                      +..+++...+      -..+|  +.+++.++...  .+.+-+.+++  -.++++++|||++..
T Consensus        60 ~~~~l~~~~~~~~i~~l~~~f--~~~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n  120 (128)
T TIGR01681        60 AYELLKIFEDFGIIFPLAEYF--DPLTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDDRPDN  120 (128)
T ss_pred             HHHHHHhccccccchhhHhhh--hhhhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECCCHhH
Confidence            9999988763      12234  22232222211  2344455566  688999999999854

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional

Probab=98.25  E-value=2.8e-06  Score=85.19  Aligned_cols=72  Identities=8%  Similarity=-0.062  Sum_probs=64.4

Q ss_pred             eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA  266 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~  266 (282)
                      .+|.|.++||||.++..  .+..+.++++.+||+++.+++++++.||++  +..+.|..+|.+.||+|++.+.+.+
T Consensus       592 ~~l~gktfV~TG~l~~~--~R~e~~~lie~~Ggkv~ssVSkktd~LV~G--~~aGsKl~KA~~LGI~Ii~e~~f~~  663 (669)
T PRK14350        592 SFLFGKKFCITGSFNGY--SRSVLIDKLTKKGAIFNTCVTKYLDFLLVG--EKAGLKLKKANNLGIKIMSLFDIKS  663 (669)
T ss_pred             CccCCcEEEEecccCCC--CHHHHHHHHHHcCCEEeccccCCCcEEEEC--CCCCchHHHHHHcCCEEecHHHHHH
Confidence            46999999999988764  489999999999999999999999999999  5455799999999999999888765

>PRK06063 DNA polymerase III subunit epsilon; Provisional

Probab=98.20  E-value=3.8e-06  Score=77.35  Aligned_cols=72  Identities=15%  Similarity=0.034  Sum_probs=61.1

Q ss_pred             eecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003          192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA  266 (282)
Q Consensus       192 vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~  266 (282)
                      .|.|.+|+|||.+..   .+.+++++++.+||+++++++++++.||++.....+.|.++|.+.||+|++.+=+.+
T Consensus       232 l~~g~~~v~TG~l~~---~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~~f~~  303 (313)
T PRK06063        232 LVQGMRVALSAEVSR---THEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEAAFLE  303 (313)
T ss_pred             ccCCCEEEEecCCCC---CHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHHHHHH
Confidence            378999999999863   489999999999999999999999999999422234899999999999999764443

>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]

Probab=98.19  E-value=2.5e-06  Score=86.35  Aligned_cols=99  Identities=10%  Similarity=0.018  Sum_probs=85.7

Q ss_pred             CcccccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCce
Q 041003          179 GDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFL  258 (282)
Q Consensus       179 ~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~I  258 (282)
                      .+-++....++...|.||.||.+|+..   .++..+..++..+||+....++..++|++..+ ...++||++|.++++++
T Consensus        90 ~~~~~l~~~~~~p~~~~~~Vc~tgl~~---~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~-~~~~~kYe~al~wn~~v  165 (811)
T KOG1929|consen   90 RLLDPLRDTMKCPGFFGLKVCLTGLSG---DEKSEIKILVPKHGGTLHRSLSSDVNSLKILP-EVKTEKYEQALKWNIPV  165 (811)
T ss_pred             ccCccchhhhcCCcccceEEEecccch---HHHHHHHHHhhhcccEEehhhhhhhheeeecc-ccchHHHHHHHhhCCcc
Confidence            334455666788899999999999833   35899999999999999999999999998884 34569999999999999


Q ss_pred             ecHHHHHHHHHhCCcCCCCCCCC
Q 041003          259 VHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       259 V~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      |+.+|+++|+......+++.|..
T Consensus       166 ~~~~w~~~s~~~~~~~~~~~~e~  188 (811)
T KOG1929|consen  166 VSDDWLFDSIEKTAVLETKPYEG  188 (811)
T ss_pred             ccHHHHhhhhccccccccccccc
Confidence            99999999999999999998864

>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]

Probab=98.15  E-value=1.7e-06  Score=87.53  Aligned_cols=98  Identities=16%  Similarity=0.196  Sum_probs=84.6

Q ss_pred             CcccccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCce
Q 041003          179 GDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFL  258 (282)
Q Consensus       179 ~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~I  258 (282)
                      ...|++..+.=.++|.||+|++++. +  .+++..+...+..+||.....+....||+++.  +....|+..|.++++++
T Consensus       480 ~~~~~vp~~~l~~~~e~~~~~~s~~-~--~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~--~~k~s~~~~~~kw~ip~  554 (811)
T KOG1929|consen  480 DNLRPVPAAALSQPFENLTISNSQS-A--EAEREKLNNLANDLGASNVKTFTRKSTTLLTT--SAKGSKYEIAGKWSIPI  554 (811)
T ss_pred             hhcCcchhhcccccccCceEEeeec-h--HHHHHHHhHhhhhccccccceeeecccEEecc--ccccchhhhccccCCCc
Confidence            3455666666678999999999875 1  25678889999999999999999888999999  77888999999999999


Q ss_pred             ecHHHHHHHHHhCCcCCCCCCCC
Q 041003          259 VHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       259 V~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      |+++||.+|.++.+..+.+-|..
T Consensus       555 vT~~wL~e~~rq~~~~~~e~~l~  577 (811)
T KOG1929|consen  555 VTPDWLYECVRQNKGERNEGFLN  577 (811)
T ss_pred             cChhHHHhhccccCcccceeecc
Confidence            99999999999999999888864

>TIGR01684 viral_ppase viral phosphatase

Probab=98.12  E-value=8.4e-06  Score=73.67  Aligned_cols=78  Identities=19%  Similarity=0.146  Sum_probs=61.8

Q ss_pred             cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEec-ccHHHHHHHHhcC-ceEE
Q 041003            4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVR-SYIRKFLKKASKM-YDIY   81 (282)
Q Consensus         4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~R-P~l~~FL~~~~~~-yei~   81 (282)
                      +++.-..+..+|+||||||+-...                                -+..| ||+.+.|+++.+. +.++
T Consensus       119 ~~~~~~~~kvIvFDLDgTLi~~~~--------------------------------~v~irdPgV~EaL~~LkekGikLa  166 (301)
T TIGR01684       119 PSKVFEPPHVVVFDLDSTLITDEE--------------------------------PVRIRDPRIYDSLTELKKRGCILV  166 (301)
T ss_pred             cccccccceEEEEecCCCCcCCCC--------------------------------ccccCCHHHHHHHHHHHHCCCEEE
Confidence            445556677899999999998743                                13478 9999999999876 8999


Q ss_pred             EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCC
Q 041003           82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF  116 (282)
Q Consensus        82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~  116 (282)
                      |+|++.++++..+++.++-.+ +|  +.+++.++.
T Consensus       167 IaTS~~Re~v~~~L~~lGLd~-YF--dvIIs~Gdv  198 (301)
T TIGR01684       167 LWSYGDRDHVVESMRKVKLDR-YF--DIIISGGHK  198 (301)
T ss_pred             EEECCCHHHHHHHHHHcCCCc-cc--CEEEECCcc
Confidence            999999999999999988775 56  455554443

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=98.11  E-value=1.2e-05  Score=72.71  Aligned_cols=78  Identities=19%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEec-ccHHHHHHHHhcC-ceEE
Q 041003            4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVR-SYIRKFLKKASKM-YDIY   81 (282)
Q Consensus         4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~R-P~l~~FL~~~~~~-yei~   81 (282)
                      +++..+.+..+|+||||||+....                                -+.+| |++.+.|+++.+. +.+.
T Consensus       121 ~~~~~~~~~~i~~D~D~TL~~~~~--------------------------------~v~irdp~V~EtL~eLkekGikLa  168 (303)
T PHA03398        121 ESLVWEIPHVIVFDLDSTLITDEE--------------------------------PVRIRDPFVYDSLDELKERGCVLV  168 (303)
T ss_pred             ceeEeeeccEEEEecCCCccCCCC--------------------------------ccccCChhHHHHHHHHHHCCCEEE
Confidence            455667778999999999998743                                13478 9999999999874 8999


Q ss_pred             EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCC
Q 041003           82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF  116 (282)
Q Consensus        82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~  116 (282)
                      |+|+|.++++..+++.+.-.+ +|  +-+++.++.
T Consensus       169 IvTNg~Re~v~~~Le~lgL~~-yF--DvII~~g~i  200 (303)
T PHA03398        169 LWSYGNREHVVHSLKETKLEG-YF--DIIICGGRK  200 (303)
T ss_pred             EEcCCChHHHHHHHHHcCCCc-cc--cEEEECCCc
Confidence            999999999999999988764 56  445555544

>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]

Probab=98.10  E-value=9.2e-06  Score=80.22  Aligned_cols=72  Identities=14%  Similarity=0.017  Sum_probs=65.2

Q ss_pred             eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA  266 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~  266 (282)
                      .+|.|.+++|||.++.-  ++..++.+++.+||+|+.+++++++-||++  +..+.|...|.+.||+|.+-+++.+
T Consensus       593 ~~l~gkt~V~TGtL~~~--sR~eak~~le~lGakv~~SVSkktD~vvaG--~~aGSKl~kA~eLgv~i~~E~~~~~  664 (667)
T COG0272         593 SPLAGKTFVLTGTLEGM--SRDEAKALLEALGAKVSGSVSKKTDYVVAG--ENAGSKLAKAQELGVKIIDEEEFLA  664 (667)
T ss_pred             cccCCCEEEEeccCCCC--CHHHHHHHHHHcCCEEeceecccccEEEEc--CCCChHHHHHHHcCCeEecHHHHHH
Confidence            57999999999998854  589999999999999999999999999999  6666699999999999999988765

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=98.08  E-value=6.6e-06  Score=64.25  Aligned_cols=62  Identities=18%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYA   91 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya   91 (282)
                      ++|+|+|+||+.+......                          ......+|++.++|+.+.+. +.++|.|++.+.++
T Consensus         1 ~~vfD~D~tl~~~~~~~~~--------------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~   54 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAE--------------------------IEELELYPGVKEALKELKEKGIKLALATNKSRREV   54 (139)
T ss_pred             CeEEccCCceEccCccccc--------------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHH
Confidence            4799999999888643110                          12356899999999999876 99999999999999


Q ss_pred             HHHHhhhcC
Q 041003           92 MMMAKLLNP  100 (282)
Q Consensus        92 ~~v~~~ldp  100 (282)
                      ..+++.+.-
T Consensus        55 ~~~~~~~~~   63 (139)
T cd01427          55 LELLEELGL   63 (139)
T ss_pred             HHHHHHcCC
Confidence            999988754

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional

Probab=98.04  E-value=1.8e-05  Score=79.79  Aligned_cols=76  Identities=12%  Similarity=-0.016  Sum_probs=66.3

Q ss_pred             eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      ..|.|.++||||.+...  .+..+..+++.+||+++++++++++.||++. .+|..|...|.+.||+|++.+-+.+=+.
T Consensus       608 ~~l~g~~~v~TG~l~~~--~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~-~~g~sKl~kA~~lgi~ii~E~~f~~ll~  683 (689)
T PRK14351        608 DALDGLTFVFTGSLSGY--TRSEAQELVEAHGGNATGSVSGNTDYLVVGE-NPGQSKRDDAEANDVPTLDEEEFEELLA  683 (689)
T ss_pred             CCCCCcEEEEccCCCCC--CHHHHHHHHHHcCCEEcCCcCCCccEEEEcC-CCChhHHHHHHHCCCeEecHHHHHHHHH
Confidence            46999999999998753  4899999999999999999999999999994 3555899999999999999888776554

>PRK06195 DNA polymerase III subunit epsilon; Validated

Probab=98.01  E-value=1.8e-05  Score=72.74  Aligned_cols=70  Identities=9%  Similarity=0.001  Sum_probs=59.7

Q ss_pred             eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCC-------CCCcHHHHHHHHC-----CCce
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSS-------RLGIKGHRLAEQH-----NKFL  258 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~-------~~~t~K~~~A~~~-----gi~I  258 (282)
                      .+|.|.++||||.+...  .+..+..+++.+||++++++++++|.||++..       ...+.|..+|.+.     ||+|
T Consensus       219 ~~l~g~~~vfTG~l~~~--~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~i  296 (309)
T PRK06195        219 TAFKEEVVVFTGGLASM--TRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIKF  296 (309)
T ss_pred             ccccCCEEEEccccCCC--CHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcEE
Confidence            36999999999998654  48999999999999999999999999999832       1346899999887     8999


Q ss_pred             ecHH
Q 041003          259 VHPQ  262 (282)
Q Consensus       259 V~~~  262 (282)
                      ++-+
T Consensus       297 i~E~  300 (309)
T PRK06195        297 LNEE  300 (309)
T ss_pred             ecHH
Confidence            9865

>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated

Probab=97.99  E-value=2.6e-05  Score=78.51  Aligned_cols=74  Identities=12%  Similarity=-0.014  Sum_probs=65.2

Q ss_pred             eecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       192 vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      .|.|.++||||.++..  .+..+..+++.+||+++++++++++.||++  ...+.|...|.+.||+|++.+-+.+.+.
T Consensus       590 ~~~g~~~v~TG~l~~~--~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G--~~~gsK~~kA~~lgI~ii~E~~f~~~l~  663 (665)
T PRK07956        590 DLAGKTVVLTGTLEQL--SRDEAKEKLEALGAKVSGSVSKKTDLVVAG--EAAGSKLAKAQELGIEVLDEEEFLRLLG  663 (665)
T ss_pred             CccccEEEEeCCCCCC--CHHHHHHHHHHcCCEEeCcccCCCCEEEEC--CCCChHHHHHHHcCCeEEcHHHHHHHHh
Confidence            3899999999998653  489999999999999999999999999999  4455899999999999999888777654

>TIGR00575 dnlj DNA ligase, NAD-dependent

Probab=97.94  E-value=2.1e-05  Score=79.04  Aligned_cols=68  Identities=10%  Similarity=0.007  Sum_probs=60.2

Q ss_pred             eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHH
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQ  262 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~  262 (282)
                      .+|.|.++||||.++..  ++..+..+++.+||+++++++++++.||++  ...+.|...|.+.||+|++.+
T Consensus       583 ~~l~gk~~v~TG~l~~~--~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G--~~~gsKl~kA~~lgi~ii~E~  650 (652)
T TIGR00575       583 SPLAGKTFVLTGTLSQM--SRDEAKELLENLGGKVASSVSKKTDYVIAG--EKAGSKLAKAQELGIPIINEE  650 (652)
T ss_pred             CCccCcEEEEeccCCCC--CHHHHHHHHHHcCCEEeCCcCCCccEEEEC--CCCChHHHHHHHcCCcEechh
Confidence            46999999999998753  489999999999999999999999999999  444569999999999999865

The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=97.90  E-value=1.5e-05  Score=71.48  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=63.9

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+ .+.++|-|++++.++..+++.++-.. +|  +.+++.+++..      .+.+-+++++-+.++
T Consensus       108 ~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F--d~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~  184 (260)
T PLN03243        108 YRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FF--SVVLAAEDVYRGKPDPEMFMYAAERLGFIPER  184 (260)
T ss_pred             cccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hC--cEEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence            5678999999999975 59999999999999999999986443 67  66787777642      234455566667899


Q ss_pred             eEEEcCChhhh
Q 041003          134 VVIVDDTEKVW  144 (282)
Q Consensus       134 vvivDd~~~~~  144 (282)
                      +++|+|+..-.
T Consensus       185 ~l~IgDs~~Di  195 (260)
T PLN03243        185 CIVFGNSNSSV  195 (260)
T ss_pred             eEEEcCCHHHH
Confidence            99999997433

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=97.90  E-value=2.3e-05  Score=69.50  Aligned_cols=80  Identities=14%  Similarity=-0.074  Sum_probs=61.8

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccccc-cCC
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLR-QEW  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~-~~~  132 (282)
                      +...||+.++|+.+.+ .+.+.|-|++.+.++..+++.++-.+.+|  +.+++.++...      .+.+-+++++- +.+
T Consensus        98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~~f~--d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~  175 (253)
T TIGR01422        98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQGYRP--DYNVTTDDVPAGRPAPWMALKNAIELGVYDVA  175 (253)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcCCCC--ceEEccccCCCCCCCHHHHHHHHHHcCCCCch
Confidence            5788999999999965 59999999999999999999987665334  67777776532      23444555664 478


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      .+++|.|++.
T Consensus       176 ~~l~IGDs~~  185 (253)
T TIGR01422       176 ACVKVGDTVP  185 (253)
T ss_pred             heEEECCcHH
Confidence            8999999973

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>COG5275 BRCT domain type II [General function prediction only]

Probab=97.83  E-value=4.9e-05  Score=65.01  Aligned_cols=78  Identities=14%  Similarity=0.009  Sum_probs=66.7

Q ss_pred             cchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHH
Q 041003          186 GKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIY  265 (282)
Q Consensus       186 ~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~  265 (282)
                      .+...+.|.|.+|+|+|..+.-  ++.....++..+||+|+...+.++|.||++. +.|..|+..+++++|+.+.-+=+.
T Consensus       150 peg~~~cL~G~~fVfTG~l~Tl--sR~~a~~lvk~yGgrvT~~pSskTtflvlGd-naGP~K~ekiKqlkIkaidEegf~  226 (276)
T COG5275         150 PEGERECLKGKVFVFTGDLKTL--SRDDAKTLVKVYGGRVTAVPSSKTTFLVLGD-NAGPSKMEKIKQLKIKAIDEEGFD  226 (276)
T ss_pred             CCCCcccccccEEEEecccccc--cchhHHHHHHHhCCeeecccccceeEEEecC-CCChHHHHHHHHhCCccccHHHHH
Confidence            3446789999999999998742  4788899999999999999999999999984 688999999999999998876554


Q ss_pred             H
Q 041003          266 A  266 (282)
Q Consensus       266 ~  266 (282)
                      .
T Consensus       227 ~  227 (276)
T COG5275         227 S  227 (276)
T ss_pred             H
Confidence            4

>TIGR01686 FkbH FkbH-like domain

Probab=97.83  E-value=2.3e-05  Score=72.25  Aligned_cols=106  Identities=17%  Similarity=0.027  Sum_probs=67.9

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcH
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIR   88 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~   88 (282)
                      .+++||+|||+||+...-.....              .   -+.      .....|++.++|+.+.+ -+.+.|.|+..+
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e~g~--------------~---~i~------~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~   58 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGEDGI--------------D---NLN------LSPLHKTLQEKIKTLKKQGFLLALASKNDE   58 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEccCCc--------------c---ccc------cCccHHHHHHHHHHHHhCCCEEEEEcCCCH
Confidence            36789999999999765422111              0   001      11247999999999975 589999999999


Q ss_pred             HHHHHHHhh----hcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcCCh
Q 041003           89 SYAMMMAKL----LNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDDTE  141 (282)
Q Consensus        89 ~Ya~~v~~~----ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd~~  141 (282)
                      ..|..+++.    +.... +|  ..+...-.... ...+-++.++-+++.+|+|||++
T Consensus        59 ~~a~~~l~~~~~~~~~~~-~f--~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~  113 (320)
T TIGR01686        59 DDAKKVFERRKDFILQAE-DF--DARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNP  113 (320)
T ss_pred             HHHHHHHHhCccccCcHH-He--eEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCH
Confidence            999999987    43322 34  21111111111 12223344556789999999998

The C-terminal portion of this domain is unique to this family (by BLAST).

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=97.82  E-value=2.2e-05  Score=65.79  Aligned_cols=123  Identities=17%  Similarity=0.040  Sum_probs=65.8

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEc-CCcH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCT-TRIR   88 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T-~~~~   88 (282)
                      +..+|+|||.||+........++|......       +.  --.+..+.-+++-|++.+.|+++.+ ..+|.+-| +..+
T Consensus         3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~-------~~--~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P   73 (169)
T PF12689_consen    3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISN-------GN--VVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEP   73 (169)
T ss_dssp             -SEEEE-STTTSSSS-TTTSS-S-EEE-TT-------S----EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S-H
T ss_pred             CcEEEEcCcCCCCchhHhhccCCCceecCC-------CC--EEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCCh
Confidence            457899999999998887665544321110       00  0112455678999999999999975 69999999 5789


Q ss_pred             HHHHHHHhhhcCC---------CcccccccEEEccCCCCCceecccc-ccccCCceEEEcCChhhh
Q 041003           89 SYAMMMAKLLNPK---------CEYHISSRLITREDFKEKGKKSGDL-VLRQEWGVVIVDDTEKVW  144 (282)
Q Consensus        89 ~Ya~~v~~~ldp~---------~~~f~~~rv~~r~~~~~~~~KdL~~-l~~~~~~vvivDd~~~~~  144 (282)
                      +.|.++++.|+-.         ..+| .+.=++.. +.....+.|.+ .+-+.+.++++||.....
T Consensus        74 ~~A~~~L~~l~i~~~~~~~~~~~~~F-~~~eI~~g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~  137 (169)
T PF12689_consen   74 DWARELLKLLEIDDADGDGVPLIEYF-DYLEIYPG-SKTTHFRRIHRKTGIPYEEMLFFDDESRNI  137 (169)
T ss_dssp             HHHHHHHHHTT-C----------CCE-CEEEESSS--HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred             HHHHHHHHhcCCCccccccccchhhc-chhheecC-chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence            9999999998765         1244 22212221 11122333332 223678899999987543

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]

Probab=97.81  E-value=6.5e-06  Score=80.69  Aligned_cols=73  Identities=12%  Similarity=0.191  Sum_probs=63.4

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      ...|+|++.||+|..+..    ..+.+++..|||.+..+.+.++||+|+.  ..+.+|+..|.-. .+++.|.|+.+||.
T Consensus       116 ~~~m~~vvlcfTg~rkk~----e~lv~lvh~mgg~irkd~nsktthli~n--~s~gek~~~a~t~-~~~~rp~wv~~aw~  188 (850)
T KOG3524|consen  116 CELMKDVVMCFTGERKKK----EELVDLVHYMGGSIRKDTNSKTTHLIAN--KVEGEKQSIALVG-VPTMRPDWVTEAWK  188 (850)
T ss_pred             chhhcCceeeeeccchhh----HHHHHHHHHhcceeEeeeccCceEEEee--cccceEEEEEeec-cceechHhhhhhhc
Confidence            457899999999997764    3889999999999999999999999999  7777777666544 99999999999954

>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]

Probab=97.79  E-value=1.6e-05  Score=75.71  Aligned_cols=80  Identities=18%  Similarity=0.333  Sum_probs=65.3

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEeccc----------CCCccEEEEcCCCCC-cHHHHHHHHCCCce
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVY----------NLSVAQVVSVSSRLG-IKGHRLAEQHNKFL  258 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~----------~~~vTHlV~~~~~~~-t~K~~~A~~~gi~I  258 (282)
                      +.+|+|++++++.-+|     +..|.=++.++||.|+.+-          +..+||=|+.  +++ +.++     .|..-
T Consensus       325 kslF~glkFfl~reVP-----resL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvD--rP~~~~~v-----~gR~Y  392 (570)
T KOG2481|consen  325 KSLFSGLKFFLNREVP-----RESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVD--RPGQQTSV-----IGRTY  392 (570)
T ss_pred             HHHhhcceeeeeccCc-----hHHHHHHHHHcCCceecCccCCCCcccccccceeeeeec--ccCcccee-----eeeee
Confidence            3689999999998877     4578889999999998872          2468999998  554 2222     27889


Q ss_pred             ecHHHHHHHHHhCCcCCCCCCCC
Q 041003          259 VHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       259 V~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      |.|+||.+|+.++..+|-+.|.|
T Consensus       393 vQPQWvfDsvNar~llpt~~Y~~  415 (570)
T KOG2481|consen  393 VQPQWVFDSVNARLLLPTEKYFP  415 (570)
T ss_pred             ecchhhhhhccchhhccHhhhCC
Confidence            99999999999999999988876

>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]

Probab=97.77  E-value=0.00011  Score=73.46  Aligned_cols=84  Identities=11%  Similarity=0.023  Sum_probs=66.7

Q ss_pred             eeecceeEE-eeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          191 QILVRCTLF-FSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       191 ~vl~G~~i~-fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      ++|.|+.+| ++|.. .. +++..+.+++..+||.++..+.++.||.|+......+.+..+|.+.++-||+|.||.+|+.
T Consensus       632 ~if~gl~f~Vlsgt~-~~-~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldcc~  709 (881)
T KOG0966|consen  632 NIFDGLEFCVLSGTS-ET-HTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDCCK  709 (881)
T ss_pred             hhhcCeeEEEecCCc-cc-ccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHHHh
Confidence            689999975 45542 22 3467899999999999999999999999974325566667778888999999999999998


Q ss_pred             hCCcCCC
Q 041003          270 LWSRQVE  276 (282)
Q Consensus       270 ~~~r~~E  276 (282)
                      ..+-++=
T Consensus       710 ~~~l~p~  716 (881)
T KOG0966|consen  710 KQRLLPW  716 (881)
T ss_pred             hhhcccc
Confidence            7765553

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=97.73  E-value=0.00017  Score=57.34  Aligned_cols=102  Identities=15%  Similarity=0.057  Sum_probs=66.8

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc----
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI----   87 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~----   87 (282)
                      .+++|+|+||++.  ..... .+                       -.....|++.++|+.+.+ .+.++|.|++.    
T Consensus         2 ~~~~D~dgtL~~~--~~~~~-~~-----------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~   55 (132)
T TIGR01662         2 GVVLDLDGTLTDD--VPYVD-DE-----------------------DERILYPEVPDALAELKEAGYKVVIVTNQSGIGR   55 (132)
T ss_pred             EEEEeCCCceecC--CCCCC-CH-----------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCccccc
Confidence            6899999999963  11111 00                       123578999999999964 59999999999    


Q ss_pred             ----HHHHHHHHhhhcCCCcccccccEEEccCCCC----Cceeccccc-cccCCceEEEcCC-h-hhhh
Q 041003           88 ----RSYAMMMAKLLNPKCEYHISSRLITREDFKE----KGKKSGDLV-LRQEWGVVIVDDT-E-KVWK  145 (282)
Q Consensus        88 ----~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~----~~~KdL~~l-~~~~~~vvivDd~-~-~~~~  145 (282)
                          ..++.++++.+.-..  +   .+++...+.+    .+.+-++++ .-+.+++++|+|+ . ++..
T Consensus        56 ~~~~~~~~~~~l~~~~l~~--~---~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~  119 (132)
T TIGR01662        56 GKFSSGRVARRLEELGVPI--D---VLYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQDLTDLQA  119 (132)
T ss_pred             cHHHHHHHHHHHHHCCCCE--E---EEEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCCCcccHHH
Confidence                888899998886541  1   1222222222    123344455 3578899999994 3 4443

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=97.72  E-value=9.3e-05  Score=60.37  Aligned_cols=105  Identities=11%  Similarity=-0.017  Sum_probs=63.8

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcH--
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIR--   88 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~--   88 (282)
                      .+|++|+||||+......-.. .+                       --+...||+.++|+.+. +.|.++|.|++.+  
T Consensus         1 ~~~~~d~dgtl~~~~~~~~~~-~~-----------------------~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~   56 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSDYPR-SL-----------------------DDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIG   56 (147)
T ss_pred             CeEEEeCCCceeccCCcccCC-CH-----------------------HHeEEcCChHHHHHHHHHCCCEEEEEeCCCccc
Confidence            368999999999987532111 00                       01357899999999996 5699999999874  


Q ss_pred             -------------HHHHHHHhhhcCCC-cccccccEEEccC--CCCC----ceeccccccccCCceEEEcCCh
Q 041003           89 -------------SYAMMMAKLLNPKC-EYHISSRLITRED--FKEK----GKKSGDLVLRQEWGVVIVDDTE  141 (282)
Q Consensus        89 -------------~Ya~~v~~~ldp~~-~~f~~~rv~~r~~--~~~~----~~KdL~~l~~~~~~vvivDd~~  141 (282)
                                   .++..+++.++-.- .+| .......+.  +.++    +.+-+.+++-+.+++++|+|++
T Consensus        57 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~  128 (147)
T TIGR01656        57 RGYFSAEAFRAPNGRVLELLRQLGVAVDGVL-FCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRL  128 (147)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHhCCCceeEEE-ECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCH
Confidence                         56666777765431 111 010000111  1111    1222233445788999999986

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=97.71  E-value=3.1e-05  Score=63.13  Aligned_cols=77  Identities=9%  Similarity=0.002  Sum_probs=56.2

Q ss_pred             EEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-----CceeccccccccCCc
Q 041003           60 LVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGDLVLRQEWG  133 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-----~~~KdL~~l~~~~~~  133 (282)
                      .....||+.++|+.+. +.+.++|.|++.+..+...++.+  -..+|  ..++..++...     .+.+-+++++.+. +
T Consensus        62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~--l~~~f--~~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~  136 (154)
T TIGR01549        62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH--LGDYF--DLILGSDEFGAKPEPEIFLAALESLGLPP-E  136 (154)
T ss_pred             hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH--HHhcC--cEEEecCCCCCCcCHHHHHHHHHHcCCCC-C
Confidence            3445699999999995 56999999999999999999985  22356  56777776542     1222334445456 8


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|++
T Consensus       137 ~l~iGDs~  144 (154)
T TIGR01549       137 VLHVGDNL  144 (154)
T ss_pred             EEEEeCCH
Confidence            99999996

HAD subfamilies caused by an overly broad single model.

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=97.64  E-value=9.5e-05  Score=73.28  Aligned_cols=81  Identities=15%  Similarity=0.168  Sum_probs=67.4

Q ss_pred             ceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCC----CCcHHHHHHHHCCCceecHHHHHHHHHh
Q 041003          195 RCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR----LGIKGHRLAEQHNKFLVHPQWIYAAYYL  270 (282)
Q Consensus       195 G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~----~~t~K~~~A~~~gi~IV~~~WL~~c~~~  270 (282)
                      -.+.+.+|..|..   ...+...|..   +....++..+||+|+..+.    ..|.|+..+...|.||++..|+.+|++.
T Consensus       478 k~~~~~s~l~p~e---k~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~  551 (684)
T KOG4362|consen  478 KLVLLVSGLTPSE---KQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKL  551 (684)
T ss_pred             ceeeeeccCCcch---HHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHh
Confidence            4556667877764   5667777777   7777888999999998543    3589999999999999999999999999


Q ss_pred             CCcCCCCCCCC
Q 041003          271 WSRQVEKDYFP  281 (282)
Q Consensus       271 ~~r~~E~~y~~  281 (282)
                      .+.++|++|+.
T Consensus       552 ~~~~~eepfEl  562 (684)
T KOG4362|consen  552 RKWVSEEPFEL  562 (684)
T ss_pred             cCCCCCCCeeE
Confidence            99999999974

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.63  E-value=6.3e-05  Score=68.36  Aligned_cols=120  Identities=14%  Similarity=0.053  Sum_probs=81.7

Q ss_pred             CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCc
Q 041003            9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRI   87 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~   87 (282)
                      .++..+++|+|+||.........  ++.        .            ..-....|++.++|+.+.+. +.++|.|+..
T Consensus       156 ~~~~~~~~D~dgtl~~~~~~~~~--~~~--------~------------~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~  213 (300)
T PHA02530        156 GLPKAVIFDIDGTLAKMGGRSPY--DWT--------K------------VKEDKPNPMVVELVKMYKAAGYEIIVVSGRD  213 (300)
T ss_pred             CCCCEEEEECCCcCcCCCCCCcc--chh--------h------------cccCCCChhHHHHHHHHHhCCCEEEEEeCCC
Confidence            45678999999999987542110  111        0            01234689999999999764 9999999999


Q ss_pred             HHHHHHHHhhhcCCCcccccccEEEccC-------CCC------Cceeccccccc-cCCceEEEcCChhhhhhCccCee
Q 041003           88 RSYAMMMAKLLNPKCEYHISSRLITRED-------FKE------KGKKSGDLVLR-QEWGVVIVDDTEKVWKDHKEHLM  152 (282)
Q Consensus        88 ~~Ya~~v~~~ldp~~~~f~~~rv~~r~~-------~~~------~~~KdL~~l~~-~~~~vvivDd~~~~~~~~~~N~i  152 (282)
                      ...+..+++.|+..+.+|  +.++..+.       +..      ...+.|..++. +.+.+++|||++..-.....+++
T Consensus       214 ~~~~~~~l~~l~~~~~~f--~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi  290 (300)
T PHA02530        214 GVCEEDTVEWLRQTDIWF--DDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGL  290 (300)
T ss_pred             hhhHHHHHHHHHHcCCch--hhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCC
Confidence            999999999999887667  55555552       111      12234444454 56899999999955543334444

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=97.61  E-value=0.00017  Score=60.07  Aligned_cols=103  Identities=17%  Similarity=0.096  Sum_probs=67.1

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCC----
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTR----   86 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~----   86 (282)
                      ..+.||.||||++..... .. .                    . ..-.++.-||+.++|+++.+ .|.++|.|+.    
T Consensus         2 ~~~~~d~dg~l~~~~~~~-~~-~--------------------~-~~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~   58 (161)
T TIGR01261         2 KILFIDRDGTLIEEPPSD-FQ-V--------------------D-ALEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLG   58 (161)
T ss_pred             CEEEEeCCCCccccCCCc-cc-c--------------------C-CHHHeeECCCHHHHHHHHHHCCCeEEEEeCCcccc
Confidence            578999999999954311 00 0                    0 01146788999999999986 5999999996    


Q ss_pred             -----------cHHHHHHHHhhhcCCCcccccccEEE----ccCCCC--C----ceeccccccccCCceEEEcCCh
Q 041003           87 -----------IRSYAMMMAKLLNPKCEYHISSRLIT----REDFKE--K----GKKSGDLVLRQEWGVVIVDDTE  141 (282)
Q Consensus        87 -----------~~~Ya~~v~~~ldp~~~~f~~~rv~~----r~~~~~--~----~~KdL~~l~~~~~~vvivDd~~  141 (282)
                                 ...++..+++.++-.   | ...+++    .+++..  +    ...-++..+-+.+++++|+|+.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~l~~~gl~---f-d~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~  130 (161)
T TIGR01261        59 TPSFPQADFDGPHNLMLQIFRSQGII---F-DDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRE  130 (161)
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHCCCc---e-eEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCH
Confidence                       366778888777765   5 233343    244422  1    1112223344778999999996

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=97.59  E-value=0.00013  Score=65.39  Aligned_cols=80  Identities=15%  Similarity=0.017  Sum_probs=59.9

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccccc-cCC
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLR-QEW  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~-~~~  132 (282)
                      +..-||+.++|+.+.+ .+.+.|-|++.+..+..+++.+.-.+.+|  +.+++.++...      .+.+-+++++- +.+
T Consensus       100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~~~~--d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~  177 (267)
T PRK13478        100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQGYRP--DHVVTTDDVPAGRPYPWMALKNAIELGVYDVA  177 (267)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcCCCc--eEEEcCCcCCCCCCChHHHHHHHHHcCCCCCc
Confidence            5678999999999964 59999999999999999998875444333  56777776532      23344555554 368


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      .+++|+|++.
T Consensus       178 e~l~IGDs~~  187 (267)
T PRK13478        178 ACVKVDDTVP  187 (267)
T ss_pred             ceEEEcCcHH
Confidence            8999999984

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=97.56  E-value=0.00028  Score=59.26  Aligned_cols=77  Identities=9%  Similarity=-0.024  Sum_probs=48.0

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcH---------------HHHHHHHhhhcCCCcccccccEEEc-----------
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIR---------------SYAMMMAKLLNPKCEYHISSRLITR-----------  113 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~---------------~Ya~~v~~~ldp~~~~f~~~rv~~r-----------  113 (282)
                      +.+-||+.++|+++.+ .|.++|.|++..               .|...++..+...   |  ..++..           
T Consensus        25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~--~~i~~~~~~~~~~~~~~   99 (176)
T TIGR00213        25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD---L--DGIYYCPHHPEGVEEFR   99 (176)
T ss_pred             eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC---c--cEEEECCCCCccccccc
Confidence            4477999999999975 599999999985               3444444433222   2  222221           


Q ss_pred             cCCC--C----CceeccccccccCCceEEEcCChh
Q 041003          114 EDFK--E----KGKKSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus       114 ~~~~--~----~~~KdL~~l~~~~~~vvivDd~~~  142 (282)
                      ++|.  +    .+.+-+++++-+++++++|+|+..
T Consensus       100 ~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~  134 (176)
T TIGR00213       100 QVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLE  134 (176)
T ss_pred             CCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHH
Confidence            1222  1    223344555567899999999873

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=97.54  E-value=0.0004  Score=58.48  Aligned_cols=101  Identities=9%  Similarity=-0.101  Sum_probs=62.6

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcH-
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIR-   88 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~-   88 (282)
                      .+.|++|+||||+-..... ..     .                  . -.+...||+.++|+++.+. |.+.|.|+++. 
T Consensus         3 ~~~~~~d~~~t~~~~~~~~-~~-----~------------------~-~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~   57 (181)
T PRK08942          3 MKAIFLDRDGVINVDSDGY-VK-----S------------------P-DEWIPIPGSIEAIARLKQAGYRVVVATNQSGI   57 (181)
T ss_pred             ccEEEEECCCCcccCCccc-cC-----C------------------H-HHeEECCCHHHHHHHHHHCCCEEEEEeCCccc
Confidence            4688999999986653210 00     0                  0 0245789999999999865 99999999873 


Q ss_pred             --------------HHHHHHHhhhcCCCcccccccEEEccC-----CC--C----CceeccccccccCCceEEEcCCh
Q 041003           89 --------------SYAMMMAKLLNPKCEYHISSRLITRED-----FK--E----KGKKSGDLVLRQEWGVVIVDDTE  141 (282)
Q Consensus        89 --------------~Ya~~v~~~ldp~~~~f~~~rv~~r~~-----~~--~----~~~KdL~~l~~~~~~vvivDd~~  141 (282)
                                    ++...+++.+   +..|  ..++...+     +.  +    .+.+-+..++-+.+++++|+|++
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~l~~~---g~~f--~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~  130 (181)
T PRK08942         58 ARGLFTEAQLNALHEKMDWSLADR---GGRL--DGIYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSL  130 (181)
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHc---CCcc--ceEEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCH
Confidence                          3333344433   2234  34443322     11  1    22344445556789999999997

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=97.52  E-value=0.00037  Score=61.67  Aligned_cols=104  Identities=13%  Similarity=0.106  Sum_probs=61.6

Q ss_pred             cchhcCCCeeEEEeCCCceeeeeccCccc----hhh-HHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-C
Q 041003            4 EMVYRQKKLHLVLDLDQTLPHAVDIDILA----SKD-RKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-M   77 (282)
Q Consensus         4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~----~~~-~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~   77 (282)
                      ++|-.++++.+++||||||+.|+..-..+    ++. ..++...    +....+. ....-.....|++.+||+.+.+ -
T Consensus        56 ~~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~----~~w~~~~-~~~~~~s~p~~~a~elL~~l~~~G  130 (237)
T TIGR01672        56 NSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQ----VFWEKVN-NGWDEFSIPKEVARQLIDMHQRRG  130 (237)
T ss_pred             HhcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcCh----HHHHHHH-HhcccCCcchhHHHHHHHHHHHCC
Confidence            46667777899999999999998721011    010 0010000    0000000 0111223344559999999965 5


Q ss_pred             ceEEEEcCC----cHHHHHHHHhhhcCCCcccccccEEEccC
Q 041003           78 YDIYLCTTR----IRSYAMMMAKLLNPKCEYHISSRLITRED  115 (282)
Q Consensus        78 yei~i~T~~----~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~  115 (282)
                      +.++|.|+.    .+.+++.+++.+.-.. +|  .-++..++
T Consensus       131 ~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f--~~i~~~d~  169 (237)
T TIGR01672       131 DAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MN--PVIFAGDK  169 (237)
T ss_pred             CEEEEEeCCCCCcCHHHHHHHHHHhCCch-he--eEEECCCC
Confidence            899999998    6679999998886554 45  44454443

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]

Probab=97.51  E-value=0.00013  Score=73.82  Aligned_cols=91  Identities=14%  Similarity=0.032  Sum_probs=64.9

Q ss_pred             ccchhh-eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEeccc-CCCc-------------------------cEEE
Q 041003          185 LGKIQR-QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVY-NLSV-------------------------AQVV  237 (282)
Q Consensus       185 L~~~r~-~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~-~~~v-------------------------THlV  237 (282)
                      +.+.++ .+|.||++.||+.+.++    ...+.-.+.+||.+.... ..--                         --||
T Consensus       917 lEe~~gkniFd~cvF~lTsa~~sd----~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLI  992 (1176)
T KOG3548|consen  917 LEEAIGKNIFDGCVFMLTSANRSD----SASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLI  992 (1176)
T ss_pred             chhhhCcchhcceeEEEeccccch----hhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEe
Confidence            333344 79999999999987654    445555566888774431 1101                         1233


Q ss_pred             EcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCCcCCCCCCC
Q 041003          238 SVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       238 ~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~y~  280 (282)
                      +.+ -..|.||..|++.|+++||+.||.+|++.++.+|=.+|+
T Consensus       993 sdt-h~Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YL 1034 (1176)
T KOG3548|consen  993 SDT-HYRTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYL 1034 (1176)
T ss_pred             ehh-hhHHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhc
Confidence            321 235889999999999999999999999999999977775

>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.47  E-value=0.00019  Score=73.95  Aligned_cols=79  Identities=20%  Similarity=0.172  Sum_probs=64.4

Q ss_pred             eeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCCcCC
Q 041003          196 CTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQV  275 (282)
Q Consensus       196 ~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~  275 (282)
                      ..+.|++...     ...+.+.++.+|+.+.. -....||+|+.. -..|.|.-.|...|++||+++||.+|.+.+..+|
T Consensus       660 ~~~lfs~~~~-----~~~~k~~~k~lg~s~~s-s~~e~Th~i~~r-irRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~d  732 (896)
T KOG2043|consen  660 IEVLFSDKND-----GKNYKLAKKFLGGSVAS-SDSEATHFIADR-IRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLD  732 (896)
T ss_pred             eeeeeeeccC-----chhhhhHHhhccceeec-ccccceeeeehh-hhccHHHHhhhccCCcccchHHHHHHhhcccccc
Confidence            4466776633     23467788888988774 457889999993 3579999999999999999999999999999999


Q ss_pred             CCCCCC
Q 041003          276 EKDYFP  281 (282)
Q Consensus       276 E~~y~~  281 (282)
                      |+.|..
T Consensus       733 ek~yil  738 (896)
T KOG2043|consen  733 EKPYIL  738 (896)
T ss_pred             Cccccc
Confidence            999964

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=97.46  E-value=0.00043  Score=62.07  Aligned_cols=79  Identities=18%  Similarity=0.082  Sum_probs=61.1

Q ss_pred             cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCc-eEEE
Q 041003            4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMY-DIYL   82 (282)
Q Consensus         4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~y-ei~i   82 (282)
                      +.+.-+.+=++|+|||+|||-.......                               .-|.+.+-|.++.+.+ -+++
T Consensus       115 ~~~~~~~phVIVfDlD~TLItd~~~v~I-------------------------------r~~~v~~sL~~Lk~~g~vLvL  163 (297)
T PF05152_consen  115 ESLVWEPPHVIVFDLDSTLITDEGDVRI-------------------------------RDPAVYDSLRELKEQGCVLVL  163 (297)
T ss_pred             hhccCCCCcEEEEECCCcccccCCcccc-------------------------------CChHHHHHHHHHHHcCCEEEE
Confidence            3455567779999999999987542111                               2378899999998765 8999


Q ss_pred             EcCCcHHHHHHHHhhhcCCCcccccccEEEccCC
Q 041003           83 CTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF  116 (282)
Q Consensus        83 ~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~  116 (282)
                      ||.|+++||..-++.++-.+ +|  +-+++++.-
T Consensus       164 WSyG~~eHV~~sl~~~~L~~-~F--d~ii~~G~~  194 (297)
T PF05152_consen  164 WSYGNREHVRHSLKELKLEG-YF--DIIICGGNK  194 (297)
T ss_pred             ecCCCHHHHHHHHHHhCCcc-cc--EEEEeCCcc
Confidence            99999999999999998664 67  667776543

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=97.45  E-value=0.00059  Score=57.05  Aligned_cols=103  Identities=15%  Similarity=-0.002  Sum_probs=63.2

Q ss_pred             CeeEEEeCCCceeeeeccCcc-chhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcH
Q 041003           11 KLHLVLDLDQTLPHAVDIDIL-ASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIR   88 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~   88 (282)
                      +..+++|+||||+-+...... ..+                       .-+..+-||+.+.|+++. +.|.+.|.|++..
T Consensus        13 ~k~~~~D~Dgtl~~~~~~~~~~~~~-----------------------~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~   69 (166)
T TIGR01664        13 SKVAAFDLDGTLITTRSGKVFPTSA-----------------------SDWRFLYPEIPAKLQELDDEGYKIVIFTNQSG   69 (166)
T ss_pred             CcEEEEeCCCceEecCCCCcccCCh-----------------------HHeEEecCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence            456889999999976432100 000                       012235699999999995 6799999999876


Q ss_pred             H------------HHHHHHhhhcCCCcccccccEEEccCC--CCC----ceecccccc--ccCCceEEEcCCh
Q 041003           89 S------------YAMMMAKLLNPKCEYHISSRLITREDF--KEK----GKKSGDLVL--RQEWGVVIVDDTE  141 (282)
Q Consensus        89 ~------------Ya~~v~~~ldp~~~~f~~~rv~~r~~~--~~~----~~KdL~~l~--~~~~~vvivDd~~  141 (282)
                      .            ++..+++.++-..     ..+++-+..  .++    ...-+++++  -+.+++++|.|++
T Consensus        70 ~~~~~~~~~~~~~~i~~~l~~~gl~~-----~~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~  137 (166)
T TIGR01664        70 IGRGKLSAESFKNKIEAFLEKLKVPI-----QVLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA  137 (166)
T ss_pred             cccCcccHHHHHHHHHHHHHHcCCCE-----EEEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence            3            4566677666432     123333322  111    112233444  4678999999986

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>PLN02940 riboflavin kinase

Probab=97.35  E-value=0.0002  Score=67.76  Aligned_cols=81  Identities=9%  Similarity=0.023  Sum_probs=60.0

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHh-hhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAK-LLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~-~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      +...||+.++|+.+.+ .+.+.|-|++.+.++..+++ ..+- ..+|  +.+++.+++..      .+.+-++.++-..+
T Consensus        92 ~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl-~~~F--d~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~  168 (382)
T PLN02940         92 IKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGW-KESF--SVIVGGDEVEKGKPSPDIFLEAAKRLNVEPS  168 (382)
T ss_pred             CCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccCh-HhhC--CEEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence            5678999999999965 59999999999999998876 4432 3367  66788887642      22334445555788


Q ss_pred             ceEEEcCChhhh
Q 041003          133 GVVIVDDTEKVW  144 (282)
Q Consensus       133 ~vvivDd~~~~~  144 (282)
                      ++++|+|+..--
T Consensus       169 ~~l~VGDs~~Di  180 (382)
T PLN02940        169 NCLVIEDSLPGV  180 (382)
T ss_pred             HEEEEeCCHHHH
Confidence            999999998433

>PHA02597 30

Probab=97.34  E-value=0.0002  Score=60.97  Aligned_cols=81  Identities=16%  Similarity=0.094  Sum_probs=51.6

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCC---cccccccEEEccCCCCC---ceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKC---EYHISSRLITREDFKEK---GKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~---~~f~~~rv~~r~~~~~~---~~KdL~~l~~~~~~v  134 (282)
                      ++..||+.++|++|.+.+.+++-|++.........+.+.-.+   .+|  +.+++.++....   +.+-+++++  ++.+
T Consensus        73 ~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f--~~i~~~~~~~~kp~~~~~a~~~~~--~~~~  148 (197)
T PHA02597         73 LSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAF--SEVLMCGHDESKEKLFIKAKEKYG--DRVV  148 (197)
T ss_pred             ccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCcc--cEEEEeccCcccHHHHHHHHHHhC--CCcE
Confidence            668999999999998878888778776655554555553221   145  445655554321   111222333  6689


Q ss_pred             EEEcCChhhhh
Q 041003          135 VIVDDTEKVWK  145 (282)
Q Consensus       135 vivDd~~~~~~  145 (282)
                      |+|||+..-..
T Consensus       149 v~vgDs~~di~  159 (197)
T PHA02597        149 CFVDDLAHNLD  159 (197)
T ss_pred             EEeCCCHHHHH
Confidence            99999986554

2 hypothetical protein; Provisional

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=97.24  E-value=0.00019  Score=62.02  Aligned_cols=80  Identities=11%  Similarity=0.006  Sum_probs=54.1

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEc----------cCCCC-----Cceecc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITR----------EDFKE-----KGKKSG  124 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r----------~~~~~-----~~~KdL  124 (282)
                      +..+||+.+||+.+.+ .+.++|.|+|...++..+++.+.-.. +| .+.+.+-          +.+..     .+.+-+
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~  161 (219)
T TIGR00338        84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AF-ANRLEVEDGKLTGLVEGPIVDASYKGKTLLILL  161 (219)
T ss_pred             CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eE-eeEEEEECCEEEEEecCcccCCcccHHHHHHHH
Confidence            5689999999999976 59999999999999999999876443 45 4332211          11110     011112


Q ss_pred             ccccccCCceEEEcCChh
Q 041003          125 DLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus       125 ~~l~~~~~~vvivDd~~~  142 (282)
                      ++++-+.+++++|+|+..
T Consensus       162 ~~~~~~~~~~i~iGDs~~  179 (219)
T TIGR00338       162 RKEGISPENTVAVGDGAN  179 (219)
T ss_pred             HHcCCCHHHEEEEECCHH
Confidence            233346788999999863

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]

Probab=97.22  E-value=0.00046  Score=64.09  Aligned_cols=92  Identities=14%  Similarity=0.235  Sum_probs=69.3

Q ss_pred             CCcccccccchh---heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecc-----------cCCCccEEEEcCCCC
Q 041003          178 CGDVRCFLGKIQ---RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDV-----------YNLSVAQVVSVSSRL  243 (282)
Q Consensus       178 ~~dvr~iL~~~r---~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~-----------~~~~vTHlV~~~~~~  243 (282)
                      ..|+......+-   ..+|+|.+++++.-+|.+     .|.=++.++||.|..+           ++..|||-|+.  ++
T Consensus       333 n~d~~~~vsk~~Ss~~slFS~f~FyisreVp~d-----sLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~d--rp  405 (591)
T COG5163         333 NKDIMEMVSKPCSSLKSLFSGFKFYISREVPGD-----SLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVD--RP  405 (591)
T ss_pred             chhhhhhccCcCcchhhhhhceEEEEeccccch-----HHHHHHHHcCCcccCchhhccCCchhhccchhhhhhcc--ch
Confidence            344444444432   368999999999988864     5677899999998654           45679999998  54


Q ss_pred             C-cHHHHHHHHCCCceecHHHHHHHHHhCCcCCCCCCCC
Q 041003          244 G-IKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       244 ~-t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      - ..|+     .|..-|.|+||.+|+..+.+.+-+.|.|
T Consensus       406 ~~~~kv-----egrtYiQPQw~fDsiNkG~l~~~~~Y~~  439 (591)
T COG5163         406 VMKNKV-----EGRTYIQPQWLFDSINKGKLACVENYCV  439 (591)
T ss_pred             hhhhhh-----cceeeechHHHHhhhccccchhhhhccc
Confidence            2 2222     3889999999999999999999888865

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=97.19  E-value=0.00076  Score=55.03  Aligned_cols=83  Identities=12%  Similarity=0.142  Sum_probs=65.5

Q ss_pred             EEEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccC
Q 041003           59 FLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQE  131 (282)
Q Consensus        59 ~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~  131 (282)
                      ......||+.++|+.++ +.+.+++.|++.+.++..+++.+... .+|  +.+++.++...      .+.+-++.++-++
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f--~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p  150 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYF--DEIISSDDVGSRKPDPDAYRRALEKLGIPP  150 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGC--SEEEEGGGSSSSTTSHHHHHHHHHHHTSSG
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-ccc--ccccccchhhhhhhHHHHHHHHHHHcCCCc
Confidence            46889999999999998 88999999999999999999998655 467  67787776653      1223334455578


Q ss_pred             CceEEEcCChhhh
Q 041003          132 WGVVIVDDTEKVW  144 (282)
Q Consensus       132 ~~vvivDd~~~~~  144 (282)
                      +++++|||++.-.
T Consensus       151 ~~~~~vgD~~~d~  163 (176)
T PF13419_consen  151 EEILFVGDSPSDV  163 (176)
T ss_dssp             GGEEEEESSHHHH
T ss_pred             ceEEEEeCCHHHH
Confidence            9999999998443

...

>PRK08238 hypothetical protein; Validated

Probab=97.03  E-value=0.0041  Score=60.62  Aligned_cols=119  Identities=13%  Similarity=0.219  Sum_probs=76.4

Q ss_pred             EecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--Cceeccccccc--cCCceEE
Q 041003           62 KVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--KGKKSGDLVLR--QEWGVVI  136 (282)
Q Consensus        62 ~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~~~KdL~~l~~--~~~~vvi  136 (282)
                      ..+|++.++++++. +-+.++|-|++.+.+++++++.++-    |  +.+++.++...  ..-| ...+..  +.+.++.
T Consensus        72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----F--d~Vigsd~~~~~kg~~K-~~~l~~~l~~~~~~y  144 (479)
T PRK08238         72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----F--DGVFASDGTTNLKGAAK-AAALVEAFGERGFDY  144 (479)
T ss_pred             CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----C--CEEEeCCCccccCCchH-HHHHHHHhCccCeeE
Confidence            47899999999996 5699999999999999999999853    6  56666554321  1112 112211  3355788


Q ss_pred             EcCCh---hhhhhCccCeeeH--HHHHHHHHHHHhHhhcccccCCCCCcccccccchhh
Q 041003          137 VDDTE---KVWKDHKEHLMLL--NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQR  190 (282)
Q Consensus       137 vDd~~---~~~~~~~~N~i~i--D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~r~  190 (282)
                      +.|+.   .+|. .-+|.+.|  |..|.+...-...... .|.. ...-.+..++-+|.
T Consensus       145 vGDS~~Dlp~~~-~A~~av~Vn~~~~l~~~a~~~~~~~~-~~~~-~~~~~~~~~~l~Rp  200 (479)
T PRK08238        145 AGNSAADLPVWA-AARRAIVVGASPGVARAARALGPVER-VFPP-RPARLRTWLKALRV  200 (479)
T ss_pred             ecCCHHHHHHHH-hCCCeEEECCCHHHHHHHHHcCCcce-ecCC-CchHHHHHHHHhCC
Confidence            88887   6666 45788888  6666665554433222 2221 23345666666664

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=96.96  E-value=0.0023  Score=56.64  Aligned_cols=99  Identities=8%  Similarity=0.056  Sum_probs=56.9

Q ss_pred             cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCC-CCCccee--ecceeEEEEecccHHHHHHHH-hcCce
Q 041003            4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSS-SDGDLFK--MASELFLVKVRSYIRKFLKKA-SKMYD   79 (282)
Q Consensus         4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~-~d~~~~~--~~~~~~~v~~RP~l~~FL~~~-~~~ye   79 (282)
                      +.+-.++++.+++|+|||+++++...-.+  ++ .+..+.... .......  ......+....||+.+||+.+ .+-++
T Consensus        56 ~~~~~~~p~av~~DIDeTvldnsp~~~~~--~~-~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~  132 (237)
T PRK11009         56 KSLEGRPPMAVGFDIDDTVLFSSPGFWRG--KK-TFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDS  132 (237)
T ss_pred             hhccCCCCcEEEEECcCccccCCchheee--ee-ccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCe
Confidence            45555667799999999999975421111  00 000000000 0000000  011233466777799999999 56799


Q ss_pred             EEEEcC----CcHHHHHHHHhhhcC-CCccc
Q 041003           80 IYLCTT----RIRSYAMMMAKLLNP-KCEYH  105 (282)
Q Consensus        80 i~i~T~----~~~~Ya~~v~~~ldp-~~~~f  105 (282)
                      |++-|+    ....++..+++.+.- ...+|
T Consensus       133 I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f  163 (237)
T PRK11009        133 IYFITGRTATKTETVSKTLADDFHIPADNMN  163 (237)
T ss_pred             EEEEeCCCCcccHHHHHHHHHHcCCCcccce
Confidence            999999    456688888876653 23355

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=96.94  E-value=0.0019  Score=54.01  Aligned_cols=100  Identities=15%  Similarity=0.119  Sum_probs=66.4

Q ss_pred             chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEE
Q 041003            5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLC   83 (282)
Q Consensus         5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~   83 (282)
                      .+.+.+-..+|+|+|+||......                                 ...||+.++|+.+.+. +.++|.
T Consensus        19 ~~~~~~v~~vv~D~Dgtl~~~~~~---------------------------------~~~pgv~e~L~~Lk~~g~~l~I~   65 (170)
T TIGR01668        19 LLKKVGIKGVVLDKDNTLVYPDHN---------------------------------EAYPALRDWIEELKAAGRKLLIV   65 (170)
T ss_pred             HHHHCCCCEEEEecCCccccCCCC---------------------------------CcChhHHHHHHHHHHcCCEEEEE
Confidence            445555568899999999865221                                 1468999999999765 999999


Q ss_pred             cCCc-HHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCCh--hhhhh
Q 041003           84 TTRI-RSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTE--KVWKD  146 (282)
Q Consensus        84 T~~~-~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~--~~~~~  146 (282)
                      |++. ...+..+.+.++-.. ++        .....   .+.+-++.++-+.+++++|+|+.  ++-..
T Consensus        66 Sn~~~~~~~~~~~~~~gl~~-~~--------~~~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA  125 (170)
T TIGR01668        66 SNNAGEQRAKAVEKALGIPV-LP--------HAVKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG  125 (170)
T ss_pred             eCCchHHHHHHHHHHcCCEE-Ec--------CCCCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH
Confidence            9999 677777777654321 11        11111   12233344555778999999996  45543

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=96.93  E-value=0.0059  Score=54.95  Aligned_cols=116  Identities=21%  Similarity=0.158  Sum_probs=70.9

Q ss_pred             cCCCeeEEEeCCCceeeeeccC-----cc-c--h-hhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cC
Q 041003            8 RQKKLHLVLDLDQTLPHAVDID-----IL-A--S-KDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KM   77 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~-----~~-~--~-~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~   77 (282)
                      +.+++.+|+|+|||++..+.-.     .. +  + .+....                 ..--...-||+.+||+.+. +-
T Consensus        72 ~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv-----------------~~~~a~~ipGA~e~L~~L~~~G  134 (266)
T TIGR01533        72 KDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWV-----------------QAAQAKPVAGALDFLNYANSKG  134 (266)
T ss_pred             CCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHH-----------------HcCCCCcCccHHHHHHHHHHCC
Confidence            4678899999999999876320     00 0  0 011100                 0012346799999999995 45


Q ss_pred             ceEEEEcCCcHHHHHHHHhhhcCCCc--ccccccEEEccCCCCCceecccc--ccccCCceEEEcCChhhh
Q 041003           78 YDIYLCTTRIRSYAMMMAKLLNPKCE--YHISSRLITREDFKEKGKKSGDL--VLRQEWGVVIVDDTEKVW  144 (282)
Q Consensus        78 yei~i~T~~~~~Ya~~v~~~ldp~~~--~f~~~rv~~r~~~~~~~~KdL~~--l~~~~~~vvivDd~~~~~  144 (282)
                      ..+++.|+....+.+...+.|...|.  .+ .+.++.|++-.   .|.-++  +...-.-++.|.|+..=+
T Consensus       135 ~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~~~-~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~vGD~~~Df  201 (266)
T TIGR01533       135 VKIFYVSNRSEKEKAATLKNLKRFGFPQAD-EEHLLLKKDKS---SKESRRQKVQKDYEIVLLFGDNLLDF  201 (266)
T ss_pred             CeEEEEeCCCcchHHHHHHHHHHcCcCCCC-cceEEeCCCCC---CcHHHHHHHHhcCCEEEEECCCHHHh
Confidence            89999999987777766666654442  12 35677776432   243222  223445588888886544

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=96.87  E-value=0.0013  Score=56.81  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=62.0

Q ss_pred             EEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      ++.+.||+.+||+++.+. +.+.|.|++.+.++...++.++-.. +|  +.+++.++...      .+.+-+++++-+.+
T Consensus        92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~  168 (221)
T TIGR02253        92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD-FF--DAVITSEEEGVEKPHPKIFYAALKRLGVKPE  168 (221)
T ss_pred             hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH-hc--cEEEEeccCCCCCCCHHHHHHHHHHcCCChh
Confidence            467899999999999765 9999999999999999998887544 67  56777766542      23344555666778


Q ss_pred             ceEEEcCCh
Q 041003          133 GVVIVDDTE  141 (282)
Q Consensus       133 ~vvivDd~~  141 (282)
                      ++++|+|++
T Consensus       169 ~~~~igDs~  177 (221)
T TIGR02253       169 EAVMVGDRL  177 (221)
T ss_pred             hEEEECCCh
Confidence            999999987

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=96.84  E-value=0.0052  Score=57.56  Aligned_cols=104  Identities=14%  Similarity=0.063  Sum_probs=64.8

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCC--
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTR--   86 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~--   86 (282)
                      +|..|+||=|+||+......-.                       ......+...||+.++|+.+.+ .|.++|.|++  
T Consensus         1 ~~k~l~lDrDgtl~~~~~~~y~-----------------------~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g   57 (354)
T PRK05446          1 MQKILFIDRDGTLIEEPPTDFQ-----------------------VDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDG   57 (354)
T ss_pred             CCcEEEEeCCCCccCCCCcccc-----------------------ccCcccceECcCHHHHHHHHHhCCCeEEEEECCcc
Confidence            4678999999999998532100                       0011246799999999999975 5999999995  


Q ss_pred             -------------cHHHHHHHHhhhcCCCcccccccEEEc-----cCCCC--Cce----eccccccccCCceEEEcCCh
Q 041003           87 -------------IRSYAMMMAKLLNPKCEYHISSRLITR-----EDFKE--KGK----KSGDLVLRQEWGVVIVDDTE  141 (282)
Q Consensus        87 -------------~~~Ya~~v~~~ldp~~~~f~~~rv~~r-----~~~~~--~~~----KdL~~l~~~~~~vvivDd~~  141 (282)
                                   .+.++..+++.+.-   .|  ..++..     ++|..  +..    .-+..+.-+++++++|.|+.
T Consensus        58 ~G~~~~~~~~l~~~~~~i~~iL~~~gl---~f--d~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~  131 (354)
T PRK05446         58 LGTDSFPQEDFDPPHNLMMQIFESQGI---KF--DEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRE  131 (354)
T ss_pred             ccCccccHHHHhhHHHHHHHHHHHcCC---ce--eeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCH
Confidence                         24455555555433   34  333322     34322  111    11122234678999999987

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=96.69  E-value=0.004  Score=61.19  Aligned_cols=106  Identities=16%  Similarity=0.041  Sum_probs=67.8

Q ss_pred             CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc
Q 041003            9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI   87 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~   87 (282)
                      .+..++.||+||||+.+....... .             +       ... |..+-||+.+.|+++.+ .|.|+|+|+..
T Consensus       166 ~~~Kia~fD~DGTLi~t~sg~~~~-~-------------~-------~~d-~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~  223 (526)
T TIGR01663       166 GQEKIAGFDLDGTIIKTKSGKVFP-K-------------G-------PDD-WQIIFPEIPEKLKELEADGFKICIFTNQG  223 (526)
T ss_pred             ccCcEEEEECCCCccccCCCccCC-C-------------C-------HHH-eeecccCHHHHHHHHHHCCCEEEEEECCc
Confidence            456788999999999875321100 0             0       001 22356999999999975 59999999977


Q ss_pred             H------------HHHHHHHhhhcCCCcccccccEEEccCCCC------C---ceeccc-cccccCCceEEEcCCh
Q 041003           88 R------------SYAMMMAKLLNPKCEYHISSRLITREDFKE------K---GKKSGD-LVLRQEWGVVIVDDTE  141 (282)
Q Consensus        88 ~------------~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~---~~KdL~-~l~~~~~~vvivDd~~  141 (282)
                      .            .++..+++.++-.   |  +-+++.++|..      +   ..+++. .+.-+++..++|.|..
T Consensus       224 gI~~G~~~~~~~~~ki~~iL~~lgip---f--dviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa  294 (526)
T TIGR01663       224 GIARGKINADDFKAKIEAIVAKLGVP---F--QVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA  294 (526)
T ss_pred             ccccCcccHHHHHHHHHHHHHHcCCc---e--EEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence            7            5678888877643   5  34455555432      1   112221 1123778999999987

Note that the EC number for the kinase function is: 2.7.1.78

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=96.67  E-value=0.0029  Score=54.46  Aligned_cols=78  Identities=9%  Similarity=0.074  Sum_probs=62.1

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccc-cccCCc
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLV-LRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l-~~~~~~  133 (282)
                      +..+||+.++|+++.+.+.++|-|++.+.++..+++.+.-.+ +|  +.+++.++...      .+.+-++++ +-++++
T Consensus        96 ~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~f--d~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~  172 (224)
T TIGR02254        96 HQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FF--DDIFVSEDAGIQKPDKEIFNYALERMPKFSKEE  172 (224)
T ss_pred             CeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hc--CEEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence            688999999999998779999999999999999998875444 57  67787766542      233445666 667889


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +|+|+|++
T Consensus       173 ~v~igD~~  180 (224)
T TIGR02254       173 VLMIGDSL  180 (224)
T ss_pred             eEEECCCc
Confidence            99999985

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=96.61  E-value=0.0059  Score=50.70  Aligned_cols=107  Identities=16%  Similarity=0.142  Sum_probs=75.7

Q ss_pred             cccchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceE
Q 041003            2 NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDI   80 (282)
Q Consensus         2 ~~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei   80 (282)
                      +.+.|..++-..+++|||+|||-=.. +.                                .-|-+++-+.++.+. -.+
T Consensus        19 ~~~~L~~~Gikgvi~DlDNTLv~wd~-~~--------------------------------~tpe~~~W~~e~k~~gi~v   65 (175)
T COG2179          19 TPDILKAHGIKGVILDLDNTLVPWDN-PD--------------------------------ATPELRAWLAELKEAGIKV   65 (175)
T ss_pred             CHHHHHHcCCcEEEEeccCceecccC-CC--------------------------------CCHHHHHHHHHHHhcCCEE
Confidence            45678899999999999999995432 11                                236788888888765 889


Q ss_pred             EEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcCCh--hhhhhC
Q 041003           81 YLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTE--KVWKDH  147 (282)
Q Consensus        81 ~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd~~--~~~~~~  147 (282)
                      +|.|++++.-+..++..||-...+- ..+-+.     ...-|-|...+-+.++|++|-|+-  ++...|
T Consensus        66 ~vvSNn~e~RV~~~~~~l~v~fi~~-A~KP~~-----~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggn  128 (175)
T COG2179          66 VVVSNNKESRVARAAEKLGVPFIYR-AKKPFG-----RAFRRALKEMNLPPEEVVMVGDQLFTDVLGGN  128 (175)
T ss_pred             EEEeCCCHHHHHhhhhhcCCceeec-ccCccH-----HHHHHHHHHcCCChhHEEEEcchhhhhhhccc
Confidence            9999999999999999988663110 000000     012345555666889999999985  666655

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=96.49  E-value=0.0043  Score=54.99  Aligned_cols=80  Identities=15%  Similarity=0.084  Sum_probs=63.5

Q ss_pred             EEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      .+...||+.++|+.+. +.+.+.|-|++.+.++..+++.++-.. +|  +.+++.+++..      .+.+-+++++-+.+
T Consensus       106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~F--d~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~  182 (248)
T PLN02770        106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD-FF--QAVIIGSECEHAKPHPDPYLKALEVLKVSKD  182 (248)
T ss_pred             cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh-hC--cEEEecCcCCCCCCChHHHHHHHHHhCCChh
Confidence            3667899999999995 569999999999999999999987654 67  66777777542      23445556666789


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      ++++|+|++.
T Consensus       183 ~~l~vgDs~~  192 (248)
T PLN02770        183 HTFVFEDSVS  192 (248)
T ss_pred             HEEEEcCCHH
Confidence            9999999983

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=96.49  E-value=0.0043  Score=53.05  Aligned_cols=82  Identities=18%  Similarity=0.087  Sum_probs=62.5

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      .+.++||+.++|+.+.+ .+.++|.|++.+.++..+++.++-.+ +|  +.+++.++...      .+.+-+++++-+.+
T Consensus        83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~  159 (213)
T TIGR01449        83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YF--SVLIGGDSLAQRKPHPDPLLLAAERLGVAPQ  159 (213)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hC--cEEEecCCCCCCCCChHHHHHHHHHcCCChh
Confidence            46789999999999975 59999999999999999999986544 56  56676665432      12344555666788


Q ss_pred             ceEEEcCChhhh
Q 041003          133 GVVIVDDTEKVW  144 (282)
Q Consensus       133 ~vvivDd~~~~~  144 (282)
                      ++++|+|++.-.
T Consensus       160 ~~~~igDs~~d~  171 (213)
T TIGR01449       160 QMVYVGDSRVDI  171 (213)
T ss_pred             HeEEeCCCHHHH
Confidence            899999997444

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>PRK09449 dUMP phosphatase; Provisional

Probab=96.48  E-value=0.0041  Score=53.79  Aligned_cols=78  Identities=10%  Similarity=0.001  Sum_probs=60.5

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccccc-cCCc
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLR-QEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~-~~~~  133 (282)
                      +...||+.++|+.+.+.|.+.|-|++.+.++...++.+.-.+ +|  +.+++.++...      .+.+-+++++. +.+.
T Consensus        94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~f--d~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~  170 (224)
T PRK09449         94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YF--DLLVISEQVGVAKPDVAIFDYALEQMGNPDRSR  170 (224)
T ss_pred             CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-Hc--CEEEEECccCCCCCCHHHHHHHHHHcCCCCccc
Confidence            568999999999999889999999999999999988876544 57  66777776542      23344455553 4578


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|++
T Consensus       171 ~~~vgD~~  178 (224)
T PRK09449        171 VLMVGDNL  178 (224)
T ss_pred             EEEEcCCc
Confidence            99999996

>PRK06769 hypothetical protein; Validated

Probab=96.47  E-value=0.0053  Score=51.48  Aligned_cols=77  Identities=8%  Similarity=-0.007  Sum_probs=46.4

Q ss_pred             EecccHHHHHHHHhc-CceEEEEcCCcHHH-----HHHHHhhhcCCCcccccccEEEccCC------CC----Cceeccc
Q 041003           62 KVRSYIRKFLKKASK-MYDIYLCTTRIRSY-----AMMMAKLLNPKCEYHISSRLITREDF------KE----KGKKSGD  125 (282)
Q Consensus        62 ~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y-----a~~v~~~ldp~~~~f~~~rv~~r~~~------~~----~~~KdL~  125 (282)
                      ..-||+.++|++|.+ .|.++|.|++....     .......+...+  | ...+++-..+      .+    .+.+-++
T Consensus        28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~-~~~~~~~~~~~~~~~~~KP~p~~~~~~~~  104 (173)
T PRK06769         28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--F-DDIYLCPHKHGDGCECRKPSTGMLLQAAE  104 (173)
T ss_pred             EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--c-CEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence            467999999999965 59999999987521     012233333332  2 1222222211      11    2334455


Q ss_pred             cccccCCceEEEcCCh
Q 041003          126 LVLRQEWGVVIVDDTE  141 (282)
Q Consensus       126 ~l~~~~~~vvivDd~~  141 (282)
                      +++-+++.+++|+|++
T Consensus       105 ~l~~~p~~~i~IGD~~  120 (173)
T PRK06769        105 KHGLDLTQCAVIGDRW  120 (173)
T ss_pred             HcCCCHHHeEEEcCCH
Confidence            5566889999999997

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=96.47  E-value=0.0049  Score=51.15  Aligned_cols=78  Identities=14%  Similarity=0.036  Sum_probs=56.1

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.+||+.+.+ .+.++|.|++...+ ..+...++-.. +|  +.+++.++...      .+.+-+++++-++++
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~  159 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LF--DVVIFSGDVGRGKPDPDIYLLALKKLGLKPEE  159 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HC--CEEEEcCCCCCCCCCHHHHHHHHHHcCCCcce
Confidence            6789999999999975 59999999999999 66665555443 56  55665554432      122333445557899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|||++.
T Consensus       160 ~~~vgD~~~  168 (183)
T TIGR01509       160 CLFVDDSPA  168 (183)
T ss_pred             EEEEcCCHH
Confidence            999999984

HAD subfamilies caused by an overly broad single model.

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=96.46  E-value=0.0038  Score=53.03  Aligned_cols=79  Identities=6%  Similarity=0.011  Sum_probs=60.1

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+. |.++|.|++...++..+++.+.-. .+|  +.+++.++...      .+.+-++.++-++++
T Consensus        91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~  167 (198)
T TIGR01428        91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPF--DAVLSADAVRAYKPAPQVYQLALEALGVPPDE  167 (198)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhh--heeEehhhcCCCCCCHHHHHHHHHHhCCChhh
Confidence            56789999999999876 999999999999999999887533 367  66777766542      122333345557899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|++.
T Consensus       168 ~~~vgD~~~  176 (198)
T TIGR01428       168 VLFVASNPW  176 (198)
T ss_pred             EEEEeCCHH
Confidence            999999983

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=96.44  E-value=0.0039  Score=54.23  Aligned_cols=79  Identities=11%  Similarity=0.083  Sum_probs=56.2

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC-C-C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK-E-K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~-~-~----~~KdL~~l~~~~~~  133 (282)
                      ...-||+.+.|+.+++ -|.+.|.|+.....++.+++.++-.. +|  .-++.-++.. . +    ...-+..++.+.++
T Consensus        88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F--~~i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~  164 (220)
T COG0546          88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YF--DVIVGGDDVPPPKPDPEPLLLLLEKLGLDPEE  164 (220)
T ss_pred             CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-cc--ceEEcCCCCCCCCcCHHHHHHHHHHhCCChhh
Confidence            5689999999999975 58999999999999999999987665 56  4445422222 1 1    11222334445568


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|-|+..
T Consensus       165 ~l~VGDs~~  173 (220)
T COG0546         165 ALMVGDSLN  173 (220)
T ss_pred             eEEECCCHH
Confidence            999999873

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=96.34  E-value=0.0062  Score=52.38  Aligned_cols=82  Identities=23%  Similarity=0.214  Sum_probs=62.9

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      .+...||+.++|+.+.+ .+.+.|.|++.+.++..+++.++-.. +|  +.+++.+++..      .+.+-+++++-+.+
T Consensus        80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f--~~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~  156 (214)
T PRK13288         80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE-FF--DVVITLDDVEHAKPDPEPVLKALELLGAKPE  156 (214)
T ss_pred             hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-ce--eEEEecCcCCCCCCCcHHHHHHHHHcCCCHH
Confidence            46788999999999975 69999999999999999999986554 67  66777776542      12333444555678


Q ss_pred             ceEEEcCChhhh
Q 041003          133 GVVIVDDTEKVW  144 (282)
Q Consensus       133 ~vvivDd~~~~~  144 (282)
                      ++++|+|++.-.
T Consensus       157 ~~~~iGDs~~Di  168 (214)
T PRK13288        157 EALMVGDNHHDI  168 (214)
T ss_pred             HEEEECCCHHHH
Confidence            999999998443

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=96.22  E-value=0.008  Score=51.32  Aligned_cols=82  Identities=13%  Similarity=0.045  Sum_probs=61.8

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      .+...||+.++|+++.+ .+.++|.|++.+.++..+++.++-.+ +|  +.+++.+++..      .+.+-+++++-+.+
T Consensus        73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~  149 (205)
T TIGR01454        73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LF--DHVIGSDEVPRPKPAPDIVREALRLLDVPPE  149 (205)
T ss_pred             ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-he--eeEEecCcCCCCCCChHHHHHHHHHcCCChh
Confidence            46789999999999964 69999999999999999999887654 56  56777766532      12223334455678


Q ss_pred             ceEEEcCChhhh
Q 041003          133 GVVIVDDTEKVW  144 (282)
Q Consensus       133 ~vvivDd~~~~~  144 (282)
                      ++++|+|++.-.
T Consensus       150 ~~l~igD~~~Di  161 (205)
T TIGR01454       150 DAVMVGDAVTDL  161 (205)
T ss_pred             heEEEcCCHHHH
Confidence            999999997433

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=96.16  E-value=0.0054  Score=51.46  Aligned_cols=77  Identities=13%  Similarity=0.040  Sum_probs=58.2

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC------C----Cceecccccccc
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK------E----KGKKSGDLVLRQ  130 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~------~----~~~KdL~~l~~~  130 (282)
                      ++..||+.++|+++.  +.++|.|++.+.++..+++.++-.. +|  +.+++.++..      +    .+.+-+++++.+
T Consensus        83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~-~f--d~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~  157 (184)
T TIGR01993        83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIED-CF--DGIFCFDTANPDYLLPKPSPQAYEKALREAGVD  157 (184)
T ss_pred             CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcHh-hh--CeEEEeecccCccCCCCCCHHHHHHHHHHhCCC
Confidence            457899999999998  6899999999999999999986443 67  5667665532      1    122334445667


Q ss_pred             CCceEEEcCChh
Q 041003          131 EWGVVIVDDTEK  142 (282)
Q Consensus       131 ~~~vvivDd~~~  142 (282)
                      ++++++|+|++.
T Consensus       158 ~~~~l~vgD~~~  169 (184)
T TIGR01993       158 PERAIFFDDSAR  169 (184)
T ss_pred             ccceEEEeCCHH
Confidence            899999999984

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=96.08  E-value=0.0096  Score=51.36  Aligned_cols=81  Identities=15%  Similarity=0.033  Sum_probs=63.9

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      +...|++.++|+.+.+.|.++|.|||...++...++.+. -..+|  +.+++.++.+.      .+..-++.++-+++.+
T Consensus        98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g-l~~~F--d~v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~  174 (229)
T COG1011          98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG-LLDYF--DAVFISEDVGVAKPDPEIFEYALEKLGVPPEEA  174 (229)
T ss_pred             CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC-Chhhh--heEEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence            678899999999998889999999999999999999987 44578  77777777652      1233444455578999


Q ss_pred             EEEcCChhhh
Q 041003          135 VIVDDTEKVW  144 (282)
Q Consensus       135 vivDd~~~~~  144 (282)
                      ++|||+...-
T Consensus       175 l~VgD~~~~d  184 (229)
T COG1011         175 LFVGDSLEND  184 (229)
T ss_pred             EEECCChhhh
Confidence            9999998544

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=95.99  E-value=0.0069  Score=50.25  Aligned_cols=52  Identities=23%  Similarity=0.234  Sum_probs=33.9

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCC
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTR   86 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~   86 (282)
                      ++.+|||||||.+....... .          ...|           +..+-|++-+-|+++.+ -|.|+|+|+.
T Consensus         2 ia~fD~DgTLi~~~s~~~f~-~----------~~~D-----------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ   54 (159)
T PF08645_consen    2 IAFFDLDGTLIKTKSGKKFP-K----------DPDD-----------WKFFPPGVPEALRELHKKGYKIVIVTNQ   54 (159)
T ss_dssp             EEEE-SCTTTEE-STSTTS--S----------STCG-----------GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred             EEEEeCCCCccCCCCCCcCc-C----------CHHH-----------hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence            57899999999997632111 0          0011           34466789999999975 6999999996

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=95.90  E-value=0.015  Score=50.17  Aligned_cols=82  Identities=11%  Similarity=0.084  Sum_probs=60.6

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      ....+||+.+||+.+.+ .+.++|.|++...++..+++.++-.. +|  +.+++.+++..      .+.+-+++++.+.+
T Consensus        91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~  167 (226)
T PRK13222         91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-YF--SVVIGGDSLPNKKPDPAPLLLACEKLGLDPE  167 (226)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc-Cc--cEEEcCCCCCCCCcChHHHHHHHHHcCCChh
Confidence            36789999999999975 59999999999999999999886543 56  55666555431      11223344555788


Q ss_pred             ceEEEcCChhhh
Q 041003          133 GVVIVDDTEKVW  144 (282)
Q Consensus       133 ~vvivDd~~~~~  144 (282)
                      ++++|+|++.-.
T Consensus       168 ~~i~igD~~~Di  179 (226)
T PRK13222        168 EMLFVGDSRNDI  179 (226)
T ss_pred             heEEECCCHHHH
Confidence            999999997433

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=95.85  E-value=0.0072  Score=51.52  Aligned_cols=84  Identities=10%  Similarity=-0.001  Sum_probs=59.3

Q ss_pred             EEEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccC
Q 041003           59 FLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQE  131 (282)
Q Consensus        59 ~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~  131 (282)
                      .+...+||+.++|+.+.+ .+.++|-|++.+..+.........-..+|  +.+++.+++..      .+..-+++++-++
T Consensus        81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~~~~p  158 (199)
T PRK09456         81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAA--DHIYLSQDLGMRKPEARIYQHVLQAEGFSA  158 (199)
T ss_pred             HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhc--CEEEEecccCCCCCCHHHHHHHHHHcCCCh
Confidence            345689999999999975 59999999999887665543321123356  66777776653      2334455566688


Q ss_pred             CceEEEcCChhhh
Q 041003          132 WGVVIVDDTEKVW  144 (282)
Q Consensus       132 ~~vvivDd~~~~~  144 (282)
                      +++++|||++.-.
T Consensus       159 ~~~l~vgD~~~di  171 (199)
T PRK09456        159 ADAVFFDDNADNI  171 (199)
T ss_pred             hHeEEeCCCHHHH
Confidence            9999999998543

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=95.79  E-value=0.011  Score=51.65  Aligned_cols=81  Identities=12%  Similarity=0.032  Sum_probs=61.0

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+ .+.+.|-|++.+.++...++.+.-. .+|  +.+++.++...      .+.+-+++++-++++
T Consensus        92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f--d~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~  168 (224)
T PRK14988         92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHL--DLLLSTHTFGYPKEDQRLWQAVAEHTGLKAER  168 (224)
T ss_pred             CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHC--CEEEEeeeCCCCCCCHHHHHHHHHHcCCChHH
Confidence            6788999999999976 5899999999999999998886533 357  55666655432      123344555668899


Q ss_pred             eEEEcCChhhh
Q 041003          134 VVIVDDTEKVW  144 (282)
Q Consensus       134 vvivDd~~~~~  144 (282)
                      +++|+|++.-.
T Consensus       169 ~l~igDs~~di  179 (224)
T PRK14988        169 TLFIDDSEPIL  179 (224)
T ss_pred             EEEEcCCHHHH
Confidence            99999998544

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=95.68  E-value=0.019  Score=54.30  Aligned_cols=82  Identities=12%  Similarity=0.111  Sum_probs=64.6

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.+||+.+.+ .+.+.|-|++.+.+++.+++.++-.. +|  +.+++.+++..      .+.+-++.++-+.++
T Consensus       215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~-yF--d~Iv~sddv~~~KP~Peifl~A~~~lgl~Pee  291 (381)
T PLN02575        215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG-FF--SVIVAAEDVYRGKPDPEMFIYAAQLLNFIPER  291 (381)
T ss_pred             CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH-Hc--eEEEecCcCCCCCCCHHHHHHHHHHcCCCccc
Confidence            4578999999999965 59999999999999999999986544 67  77888887642      234455556668899


Q ss_pred             eEEEcCChhhhh
Q 041003          134 VVIVDDTEKVWK  145 (282)
Q Consensus       134 vvivDd~~~~~~  145 (282)
                      +++|+|+..-..
T Consensus       292 cl~IGDS~~DIe  303 (381)
T PLN02575        292 CIVFGNSNQTVE  303 (381)
T ss_pred             EEEEcCCHHHHH
Confidence            999999884443

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=95.64  E-value=0.012  Score=49.40  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=60.4

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      +..-|++ +.|+.+.+.+.+.|-|++.+.+++.+++.+.-.+ +|  +.+++.++...      .+..-+++++.+.+.+
T Consensus        87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~f--d~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~  162 (188)
T PRK10725         87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YF--DAVVAADDVQHHKPAPDTFLRCAQLMGVQPTQC  162 (188)
T ss_pred             CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-Hc--eEEEehhhccCCCCChHHHHHHHHHcCCCHHHe
Confidence            3456764 8899998779999999999999999999986443 67  67888887642      1233444455577899


Q ss_pred             EEEcCChhhhh
Q 041003          135 VIVDDTEKVWK  145 (282)
Q Consensus       135 vivDd~~~~~~  145 (282)
                      |+|+|++.-..
T Consensus       163 l~igDs~~di~  173 (188)
T PRK10725        163 VVFEDADFGIQ  173 (188)
T ss_pred             EEEeccHhhHH
Confidence            99999975443

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=95.61  E-value=0.015  Score=50.39  Aligned_cols=82  Identities=11%  Similarity=0.020  Sum_probs=62.1

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      ....||+.++|+.+.+ .+.++|.|++.+..++.+++.+.-.+ +|  +.+++.++...      .+..-++.++-++++
T Consensus        91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  167 (222)
T PRK10826         91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YF--DALASAEKLPYSKPHPEVYLNCAAKLGVDPLT  167 (222)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-cc--cEEEEcccCCCCCCCHHHHHHHHHHcCCCHHH
Confidence            5678999999999974 59999999999999999999876444 57  66777766432      122333445557889


Q ss_pred             eEEEcCChhhhh
Q 041003          134 VVIVDDTEKVWK  145 (282)
Q Consensus       134 vvivDd~~~~~~  145 (282)
                      +++|+|+..-..
T Consensus       168 ~~~igDs~~Di~  179 (222)
T PRK10826        168 CVALEDSFNGMI  179 (222)
T ss_pred             eEEEcCChhhHH
Confidence            999999985443

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=95.61  E-value=0.023  Score=49.57  Aligned_cols=81  Identities=14%  Similarity=0.023  Sum_probs=61.1

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      .+...||+.++|+.+.+ .+.+.|-|++...++..+++.++-.. +|  +.+++.+++..      .+.+-+++++-+.+
T Consensus        93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~  169 (229)
T PRK13226         93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RC--AVLIGGDTLAERKPHPLPLLVAAERIGVAPT  169 (229)
T ss_pred             cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-cc--cEEEecCcCCCCCCCHHHHHHHHHHhCCChh
Confidence            46789999999999975 48999999999999999998876443 56  55666665432      13344455666789


Q ss_pred             ceEEEcCChhh
Q 041003          133 GVVIVDDTEKV  143 (282)
Q Consensus       133 ~vvivDd~~~~  143 (282)
                      ++++|+|++.-
T Consensus       170 ~~l~IGDs~~D  180 (229)
T PRK13226        170 DCVYVGDDERD  180 (229)
T ss_pred             hEEEeCCCHHH
Confidence            99999999743

>PRK11587 putative phosphatase; Provisional

Probab=95.59  E-value=0.022  Score=49.25  Aligned_cols=80  Identities=14%  Similarity=-0.023  Sum_probs=58.7

Q ss_pred             EEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      .+...||+.++|+.+. +.+.+.|-|+++..++..+++...-.  +|  ..+++.++...      .+.+-+..++-.++
T Consensus        81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~--~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~  156 (218)
T PRK11587         81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--AP--EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQ  156 (218)
T ss_pred             CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--Cc--cEEEEHHHhcCCCCCcHHHHHHHHHcCCCcc
Confidence            3678999999999996 56999999999999887777665432  34  44666665432      23444555666789


Q ss_pred             ceEEEcCChhh
Q 041003          133 GVVIVDDTEKV  143 (282)
Q Consensus       133 ~vvivDd~~~~  143 (282)
                      ++++|+|++.-
T Consensus       157 ~~l~igDs~~d  167 (218)
T PRK11587        157 ECVVVEDAPAG  167 (218)
T ss_pred             cEEEEecchhh
Confidence            99999999843

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=95.58  E-value=0.01  Score=51.24  Aligned_cols=82  Identities=10%  Similarity=0.026  Sum_probs=59.5

Q ss_pred             EEEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           60 LVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      .+...||+.++|+.+.  +.+.|.|++.+.+++.+++..+-.. +| ...+++.++...      .+..-+++++-+.++
T Consensus        86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F-~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~  161 (221)
T PRK10563         86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YF-PDKLFSGYDIQRWKPDPALMFHAAEAMNVNVEN  161 (221)
T ss_pred             cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hC-cceEeeHHhcCCCCCChHHHHHHHHHcCCCHHH
Confidence            3677899999999994  8999999999999999988775443 46 344666655432      223344445557789


Q ss_pred             eEEEcCChhhhh
Q 041003          134 VVIVDDTEKVWK  145 (282)
Q Consensus       134 vvivDd~~~~~~  145 (282)
                      +++|+|++.-..
T Consensus       162 ~l~igDs~~di~  173 (221)
T PRK10563        162 CILVDDSSAGAQ  173 (221)
T ss_pred             eEEEeCcHhhHH
Confidence            999999985443

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=95.57  E-value=0.02  Score=50.51  Aligned_cols=72  Identities=14%  Similarity=0.076  Sum_probs=51.0

Q ss_pred             chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEE
Q 041003            5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLC   83 (282)
Q Consensus         5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~   83 (282)
                      .|+.+-+ .+++|+||||++...                                   .-||+.++|+++.+ .+.+++.
T Consensus         3 ~~~~~~~-~~~~D~dG~l~~~~~-----------------------------------~~pga~e~L~~L~~~G~~~~iv   46 (242)
T TIGR01459         3 DLINDYD-VFLLDLWGVIIDGNH-----------------------------------TYPGAVQNLNKIIAQGKPVYFV   46 (242)
T ss_pred             hhhhcCC-EEEEecccccccCCc-----------------------------------cCccHHHHHHHHHHCCCEEEEE
Confidence            3554444 678999999986532                                   35899999999975 5899999


Q ss_pred             cCCcHHHHH--HHHhhhcCCCcccccccEEEcc
Q 041003           84 TTRIRSYAM--MMAKLLNPKCEYHISSRLITRE  114 (282)
Q Consensus        84 T~~~~~Ya~--~v~~~ldp~~~~f~~~rv~~r~  114 (282)
                      |++++..++  +.++.++-....|  +.|++.+
T Consensus        47 TN~~~~~~~~~~~L~~~gl~~~~~--~~Ii~s~   77 (242)
T TIGR01459        47 SNSPRNIFSLHKTLKSLGINADLP--EMIISSG   77 (242)
T ss_pred             eCCCCChHHHHHHHHHCCCCcccc--ceEEccH
Confidence            999988776  6667666543134  4455544

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=95.55  E-value=0.034  Score=44.38  Aligned_cols=49  Identities=10%  Similarity=0.028  Sum_probs=35.6

Q ss_pred             ecccHHHHHHHH-hcCceEEEEcCCcHHHHH------------HHHhhhcCCCcccccccEEEc
Q 041003           63 VRSYIRKFLKKA-SKMYDIYLCTTRIRSYAM------------MMAKLLNPKCEYHISSRLITR  113 (282)
Q Consensus        63 ~RP~l~~FL~~~-~~~yei~i~T~~~~~Ya~------------~v~~~ldp~~~~f~~~rv~~r  113 (282)
                      ..|.+.+.|+++ .+-+++++.|+-......            .+.+.|+..+.-|  +.++-|
T Consensus        25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY--d~l~~~   86 (126)
T TIGR01689        25 PILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY--DEIYVG   86 (126)
T ss_pred             cCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC--ceEEeC
Confidence            678888999988 567999999988777766            6777777665433  444433

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=95.53  E-value=0.023  Score=48.89  Aligned_cols=79  Identities=14%  Similarity=-0.005  Sum_probs=60.0

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCC-CcccccccEEEccCCC--C----Cceecccccccc-C
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPK-CEYHISSRLITREDFK--E----KGKKSGDLVLRQ-E  131 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~-~~~f~~~rv~~r~~~~--~----~~~KdL~~l~~~-~  131 (282)
                      ..+.||+.++|+.+. +.+.+.|-|++.+.++..+++.++-. +.+|  +.+++.++-.  +    .+.+-+++++.. +
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f--~~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~  163 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDV--DAVVCPSDVAAGRPAPDLILRAMELTGVQDV  163 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccC--CEEEcCCcCCCCCCCHHHHHHHHHHcCCCCh
Confidence            579999999999996 56999999999999999999998754 2577  5667666532  1    122334445544 6


Q ss_pred             CceEEEcCCh
Q 041003          132 WGVVIVDDTE  141 (282)
Q Consensus       132 ~~vvivDd~~  141 (282)
                      +++++|+|++
T Consensus       164 ~~~~~igD~~  173 (220)
T TIGR03351       164 QSVAVAGDTP  173 (220)
T ss_pred             hHeEEeCCCH
Confidence            8999999997

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=95.47  E-value=0.053  Score=45.44  Aligned_cols=100  Identities=14%  Similarity=0.148  Sum_probs=65.7

Q ss_pred             hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCc-e--EEE
Q 041003            6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMY-D--IYL   82 (282)
Q Consensus         6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~y-e--i~i   82 (282)
                      |-+.+=..||+|+|+||..-...                                 ..-|.+.+.++++.+.| +  |.|
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~---------------------------------~i~~~~~~~~~~l~~~~~~~~v~I   82 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYED---------------------------------EIPPEYAEWLNELKKQFGKDRVLI   82 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcC---------------------------------cCCHHHHHHHHHHHHHCCCCeEEE
Confidence            67778889999999999754321                                 14466788888888765 3  999


Q ss_pred             EcCC-------cHHHHHHHHhhhcCCCcccccccEEEccCCCCC-ceecccccc------ccCCceEEEcCCh--hhhhh
Q 041003           83 CTTR-------IRSYAMMMAKLLNPKCEYHISSRLITREDFKEK-GKKSGDLVL------RQEWGVVIVDDTE--KVWKD  146 (282)
Q Consensus        83 ~T~~-------~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~-~~KdL~~l~------~~~~~vvivDd~~--~~~~~  146 (282)
                      +|++       ...-|+.+-+.|.-.  +|       |..+.++ ..+++.+.+      ...+++++|.|+-  ++...
T Consensus        83 vSNsaGs~~d~~~~~a~~~~~~lgIp--vl-------~h~~kKP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~g  153 (168)
T PF09419_consen   83 VSNSAGSSDDPDGERAEALEKALGIP--VL-------RHRAKKPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMG  153 (168)
T ss_pred             EECCCCcccCccHHHHHHHHHhhCCc--EE-------EeCCCCCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHh
Confidence            9998       367777787777633  12       2223221 122332222      2488999999996  66665


Q ss_pred             C
Q 041003          147 H  147 (282)
Q Consensus       147 ~  147 (282)
                      +
T Consensus       154 N  154 (168)
T PF09419_consen  154 N  154 (168)
T ss_pred             h
Confidence            5

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=95.37  E-value=0.04  Score=42.07  Aligned_cols=35  Identities=14%  Similarity=-0.055  Sum_probs=25.5

Q ss_pred             cccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhh
Q 041003           64 RSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLL   98 (282)
Q Consensus        64 RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~l   98 (282)
                      =||..+|++.+.+. ..+++.||++..-...+++.|
T Consensus        16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L   51 (101)
T PF13344_consen   16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL   51 (101)
T ss_dssp             -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred             CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence            38999999999765 899999999855555555554

...

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=95.23  E-value=0.043  Score=49.65  Aligned_cols=94  Identities=13%  Similarity=0.180  Sum_probs=62.6

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhc---CCCcccccccEEEccCCC--C-------Ccee--cc
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLN---PKCEYHISSRLITREDFK--E-------KGKK--SG  124 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ld---p~~~~f~~~rv~~r~~~~--~-------~~~K--dL  124 (282)
                      -+.+|||+.+|++.+.+ ...++|+|+|...+++.+++.+.   |...++ ++++...++..  +       ..-|  ++
T Consensus       119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~Iv-SN~L~f~~dGvltG~~~P~i~~~~K~~~v  197 (277)
T TIGR01544       119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVV-SNFMDFDEDGVLKGFKGPLIHTFNKNHDV  197 (277)
T ss_pred             CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEE-eeeEEECCCCeEeCCCCCcccccccHHHH
Confidence            47899999999999965 58999999999999999999743   343454 45544332211  1       1112  11


Q ss_pred             c-----ccc--ccCCceEEEcCCh-hhhh----hCccCeeeH
Q 041003          125 D-----LVL--RQEWGVVIVDDTE-KVWK----DHKEHLMLL  154 (282)
Q Consensus       125 ~-----~l~--~~~~~vvivDd~~-~~~~----~~~~N~i~i  154 (282)
                      .     .++  .+.+++|+|.|.. +..+    .+.+|.|.|
T Consensus       198 ~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~i  239 (277)
T TIGR01544       198 ALRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKI  239 (277)
T ss_pred             HHHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEE
Confidence            1     122  3567899999997 3333    245688888

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=95.07  E-value=0.019  Score=47.79  Aligned_cols=79  Identities=19%  Similarity=0.159  Sum_probs=56.2

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+ .+.++|-|++  .++..+++.++-.+ +|  +.+++.++...      .+.+-++.++.+.++
T Consensus        87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~-~f--~~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~  161 (185)
T TIGR02009        87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD-YF--DAIVDADEVKEGKPHPETFLLAAELLGVSPNE  161 (185)
T ss_pred             CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH-HC--CEeeehhhCCCCCCChHHHHHHHHHcCCCHHH
Confidence            6789999999999975 5899999988  77888888765433 56  45666655432      122334445557789


Q ss_pred             eEEEcCChhhh
Q 041003          134 VVIVDDTEKVW  144 (282)
Q Consensus       134 vvivDd~~~~~  144 (282)
                      +++|+|++.-.
T Consensus       162 ~v~IgD~~~di  172 (185)
T TIGR02009       162 CVVFEDALAGV  172 (185)
T ss_pred             eEEEeCcHhhH
Confidence            99999997433

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=95.03  E-value=0.04  Score=49.60  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCC------ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEK------GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~------~~KdL~~l~~~~~~  133 (282)
                      +..+||+.++|+.+.+ .+.++|.|++...++..+++.++-. .+|  +.+++.+++...      +.+-+++++-+.++
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f--~~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~  176 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG-RYF--RWIIGGDTLPQKKPDPAALLFVMKMAGVPPSQ  176 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH-hhC--eEEEecCCCCCCCCCcHHHHHHHHHhCCChhH
Confidence            5679999999999964 6999999999999999999887543 356  567776655321      11222334447889


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|++.
T Consensus       177 ~l~IGD~~~  185 (272)
T PRK13223        177 SLFVGDSRS  185 (272)
T ss_pred             EEEECCCHH
Confidence            999999974

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=94.98  E-value=0.04  Score=46.81  Aligned_cols=77  Identities=12%  Similarity=-0.030  Sum_probs=54.6

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+ .+.++|.|++.+.. ..+++.++-. .+|  +.++..+++..      .+.+-++.++-++++
T Consensus       104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~  179 (203)
T TIGR02252       104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLL-EYF--DFVVTSYEVGAEKPDPKIFQEALERAGISPEE  179 (203)
T ss_pred             ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcH-Hhc--ceEEeecccCCCCCCHHHHHHHHHHcCCChhH
Confidence            3678999999999986 49999999998764 6666665432 356  56666655432      123344455567899


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|+.
T Consensus       180 ~~~IgD~~  187 (203)
T TIGR02252       180 ALHIGDSL  187 (203)
T ss_pred             EEEECCCc
Confidence            99999986

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=94.92  E-value=0.065  Score=46.40  Aligned_cols=38  Identities=11%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhh
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLL   98 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~l   98 (282)
                      +.++||+.+||+.+.+ .+.++|.|+|.+.|++++++.+
T Consensus        73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~  111 (219)
T PRK09552         73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL  111 (219)
T ss_pred             CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence            6799999999999975 5999999999999999999886

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=94.75  E-value=0.05  Score=47.60  Aligned_cols=83  Identities=6%  Similarity=-0.074  Sum_probs=57.1

Q ss_pred             EEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCC--CcccccccEEEccCCCC----CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPK--CEYHISSRLITREDFKE----KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~--~~~f~~~rv~~r~~~~~----~~~KdL~~l~~~~~  132 (282)
                      ...+.||+.++|+++. +.+.++|+|+++..+...+.+..+-.  ..+|  +.++....+.+    .+.+-++.++-+++
T Consensus        93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~~f--~~~fd~~~g~KP~p~~y~~i~~~lgv~p~  170 (220)
T TIGR01691        93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTPYF--SGYFDTTVGLKTEAQSYVKIAGQLGSPPR  170 (220)
T ss_pred             ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhhhc--ceEEEeCcccCCCHHHHHHHHHHhCcChh
Confidence            3568999999999996 56999999999999999888775311  1245  23343222222    23444555666789


Q ss_pred             ceEEEcCChhhh
Q 041003          133 GVVIVDDTEKVW  144 (282)
Q Consensus       133 ~vvivDd~~~~~  144 (282)
                      ++++|+|++.-.
T Consensus       171 e~lfVgDs~~Di  182 (220)
T TIGR01691       171 EILFLSDIINEL  182 (220)
T ss_pred             HEEEEeCCHHHH
Confidence            999999997433

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=94.74  E-value=0.067  Score=45.39  Aligned_cols=77  Identities=14%  Similarity=0.013  Sum_probs=56.9

Q ss_pred             EecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-----CceeccccccccCCceE
Q 041003           62 KVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGDLVLRQEWGVV  135 (282)
Q Consensus        62 ~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-----~~~KdL~~l~~~~~~vv  135 (282)
                      +..|+..++|+.+.+ -+.+.|.|++.+.++..+++.+.-. .+|  +.+++.++...     .+.+-++.++-+.++++
T Consensus       106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f--~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i  182 (197)
T TIGR01548       106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILF--PVQIWMEDCPPKPNPEPLILAAKALGVEACHAA  182 (197)
T ss_pred             ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhC--CEEEeecCCCCCcCHHHHHHHHHHhCcCcccEE
Confidence            345566999999975 4999999999999999999998654 367  56677666432     12333344555778999


Q ss_pred             EEcCCh
Q 041003          136 IVDDTE  141 (282)
Q Consensus       136 ivDd~~  141 (282)
                      +|+|++
T Consensus       183 ~vGD~~  188 (197)
T TIGR01548       183 MVGDTV  188 (197)
T ss_pred             EEeCCH
Confidence            999987

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=94.72  E-value=0.036  Score=50.34  Aligned_cols=84  Identities=12%  Similarity=0.118  Sum_probs=58.3

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +.+.||+.++|+.+.+ .+.++|-|++.+.++..+++.+.-. .+|..-.+++.+++..      .+.+-++.++-+.++
T Consensus       143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~  221 (286)
T PLN02779        143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR  221 (286)
T ss_pred             CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccc-cccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence            5789999999999975 6999999999999999998876211 1230112345555432      123334455557889


Q ss_pred             eEEEcCChhhhh
Q 041003          134 VVIVDDTEKVWK  145 (282)
Q Consensus       134 vvivDd~~~~~~  145 (282)
                      +++|+|++.-..
T Consensus       222 ~l~IGDs~~Di~  233 (286)
T PLN02779        222 CVVVEDSVIGLQ  233 (286)
T ss_pred             EEEEeCCHHhHH
Confidence            999999985554

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=94.65  E-value=0.079  Score=45.73  Aligned_cols=46  Identities=11%  Similarity=0.142  Sum_probs=39.4

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCccc
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYH  105 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f  105 (282)
                      .+.+|||+.+||+.+.+ ...++|.|+|.+.|++++++.+.+...++
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~  114 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIY  114 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEE
Confidence            47899999999999976 59999999999999999999885544344

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=94.57  E-value=0.11  Score=42.56  Aligned_cols=98  Identities=17%  Similarity=0.067  Sum_probs=59.3

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYA   91 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya   91 (282)
                      .+++|+||||+-....  ....                    +...-++.++|+.  -++++.+ .+.++|-|+..+..+
T Consensus         3 ~~~~D~Dgtl~~~~~~--~~~~--------------------~~~~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~   58 (154)
T TIGR01670         3 LLILDVDGVLTDGKIY--YTNN--------------------GEEIKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLV   58 (154)
T ss_pred             EEEEeCceeEEcCeEE--ECCC--------------------CcEEEEEechhHH--HHHHHHHCCCEEEEEECCCCHHH
Confidence            5789999999954221  0000                    0111234677776  6788864 699999999999999


Q ss_pred             HHHHhhhcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcCCh
Q 041003           92 MMMAKLLNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDDTE  141 (282)
Q Consensus        92 ~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd~~  141 (282)
                      ..+++.+.-.. +| ..     ..... ...+=++.++-+.+.+++|-|+.
T Consensus        59 ~~~l~~~gi~~-~~-~~-----~~~k~~~~~~~~~~~~~~~~~~~~vGDs~  102 (154)
T TIGR01670        59 EDRCKTLGITH-LY-QG-----QSNKLIAFSDILEKLALAPENVAYIGDDL  102 (154)
T ss_pred             HHHHHHcCCCE-EE-ec-----ccchHHHHHHHHHHcCCCHHHEEEECCCH
Confidence            99998886543 34 11     11100 11112223334667888888876

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=94.31  E-value=0.029  Score=47.98  Aligned_cols=82  Identities=9%  Similarity=-0.125  Sum_probs=53.4

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHH--HHHhhhcCCCcccccccEEEccCCCC------Cceecccccccc
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAM--MMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQ  130 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~--~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~  130 (282)
                      .+.+.||+.++|+.+.+ .+.++|.|++...+..  .....++ -..+|  +.+++.++...      .+.+-+++++-+
T Consensus        92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~-l~~~f--d~v~~s~~~~~~KP~p~~~~~~~~~~g~~  168 (211)
T TIGR02247        92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGD-IMALF--DAVVESCLEGLRKPDPRIYQLMLERLGVA  168 (211)
T ss_pred             ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhh-hHhhC--CEEEEeeecCCCCCCHHHHHHHHHHcCCC
Confidence            46689999999999975 5999999998765522  2222111 12356  55665554431      233444556667


Q ss_pred             CCceEEEcCChhhh
Q 041003          131 EWGVVIVDDTEKVW  144 (282)
Q Consensus       131 ~~~vvivDd~~~~~  144 (282)
                      ++.+++|||++.-.
T Consensus       169 ~~~~l~i~D~~~di  182 (211)
T TIGR02247       169 PEECVFLDDLGSNL  182 (211)
T ss_pred             HHHeEEEcCCHHHH
Confidence            88999999997544

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=94.30  E-value=0.09  Score=47.13  Aligned_cols=57  Identities=23%  Similarity=0.223  Sum_probs=44.7

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~   89 (282)
                      ...+++||||||+.+...                                  ..|...+.|+.+.+. ..++|.|.-...
T Consensus         4 ~kli~~DlDGTLl~~~~~----------------------------------~~~~~~~ai~~l~~~Gi~~~iaTgR~~~   49 (273)
T PRK00192          4 KLLVFTDLDGTLLDHHTY----------------------------------SYEPAKPALKALKEKGIPVIPCTSKTAA   49 (273)
T ss_pred             ceEEEEcCcccCcCCCCc----------------------------------CcHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence            458899999999975321                                  235677888888765 899999999999


Q ss_pred             HHHHHHhhhcCC
Q 041003           90 YAMMMAKLLNPK  101 (282)
Q Consensus        90 Ya~~v~~~ldp~  101 (282)
                      .+..+++.++..
T Consensus        50 ~~~~~~~~l~l~   61 (273)
T PRK00192         50 EVEVLRKELGLE   61 (273)
T ss_pred             HHHHHHHHcCCC
Confidence            999999988643

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=93.93  E-value=0.09  Score=47.48  Aligned_cols=79  Identities=9%  Similarity=-0.003  Sum_probs=56.3

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEE
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVI  136 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvi  136 (282)
                      +...||+.++|+.+. +.+.+.|.|++.+.++..+++.++-.. +|  +.+++.+....   .+.+-+++++-+.+++++
T Consensus       141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~-~F--~~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~  217 (273)
T PRK13225        141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS-LF--SVVQAGTPILSKRRALSQLVAREGWQPAAVMY  217 (273)
T ss_pred             CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh-he--EEEEecCCCCCCHHHHHHHHHHhCcChhHEEE
Confidence            566899999999997 458999999999999999999987544 56  44555443221   111122233346688999


Q ss_pred             EcCChh
Q 041003          137 VDDTEK  142 (282)
Q Consensus       137 vDd~~~  142 (282)
                      |+|++.
T Consensus       218 IGDs~~  223 (273)
T PRK13225        218 VGDETR  223 (273)
T ss_pred             ECCCHH
Confidence            999973

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=93.87  E-value=0.044  Score=47.81  Aligned_cols=81  Identities=14%  Similarity=0.070  Sum_probs=64.5

Q ss_pred             EEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      -++..||+.+||+.+... .-+.+-|++.+.-+..+++.+.-.. +|  .-++++++...      .|.+-.++|+-+++
T Consensus        84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f--~~~v~~~dv~~~KP~Pd~yL~Aa~~Lgv~P~  160 (221)
T COG0637          84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YF--DVIVTADDVARGKPAPDIYLLAAERLGVDPE  160 (221)
T ss_pred             CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hc--chhccHHHHhcCCCCCHHHHHHHHHcCCChH
Confidence            368999999999999876 9999999999999999998887555 46  33455655432      35667777888999


Q ss_pred             ceEEEcCChhh
Q 041003          133 GVVIVDDTEKV  143 (282)
Q Consensus       133 ~vvivDd~~~~  143 (282)
                      ++|+|+|++.-
T Consensus       161 ~CvviEDs~~G  171 (221)
T COG0637         161 ECVVVEDSPAG  171 (221)
T ss_pred             HeEEEecchhH
Confidence            99999999843

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=93.70  E-value=0.047  Score=47.45  Aligned_cols=42  Identities=5%  Similarity=0.041  Sum_probs=38.8

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKC  102 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~  102 (282)
                      +.++||..+.++.+.+. +.++|.|.|...++++|.+.+.-+.
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~  118 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY  118 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch
Confidence            88999999999999765 9999999999999999999997665

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=93.68  E-value=0.019  Score=47.49  Aligned_cols=72  Identities=11%  Similarity=-0.029  Sum_probs=54.9

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      +..+||+.++|+.      +.|.|++.+.+...+++.+.-. .+|  +.+++.++...      .+.+-+++++-+++.+
T Consensus        89 ~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~f--d~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~  159 (175)
T TIGR01493        89 LPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYF--DRAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV  159 (175)
T ss_pred             CCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHH--hhhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence            5689999999993      7899999999999999987543 357  55777776432      2344455566688999


Q ss_pred             EEEcCCh
Q 041003          135 VIVDDTE  141 (282)
Q Consensus       135 vivDd~~  141 (282)
                      ++|+|++
T Consensus       160 l~vgD~~  166 (175)
T TIGR01493       160 LMVAAHQ  166 (175)
T ss_pred             EeEecCh
Confidence            9999996

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>PLN02811 hydrolase

Probab=93.54  E-value=0.073  Score=46.08  Aligned_cols=82  Identities=7%  Similarity=0.005  Sum_probs=55.2

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHH-HhhhcCCCcccccccEEEcc--CCCC------Cceecccccc--
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMM-AKLLNPKCEYHISSRLITRE--DFKE------KGKKSGDLVL--  128 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v-~~~ldp~~~~f~~~rv~~r~--~~~~------~~~KdL~~l~--  128 (282)
                      +.+.||+.++|+.+.+ .+.+.|-|++.+.+.... .+...- ..+|  +.+++.+  ++..      .+.+-+++++  
T Consensus        77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l-~~~f--~~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~  153 (220)
T PLN02811         77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGEL-FSLM--HHVVTGDDPEVKQGKPAPDIFLAAARRFEDG  153 (220)
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHH-HhhC--CEEEECChhhccCCCCCcHHHHHHHHHhCCC
Confidence            5678999999999975 599999999998766543 222111 1256  5677777  5432      2344445554  


Q ss_pred             -ccCCceEEEcCChhhhh
Q 041003          129 -RQEWGVVIVDDTEKVWK  145 (282)
Q Consensus       129 -~~~~~vvivDd~~~~~~  145 (282)
                       -..+.+++|+|+..-..
T Consensus       154 ~~~~~~~v~IgDs~~di~  171 (220)
T PLN02811        154 PVDPGKVLVFEDAPSGVE  171 (220)
T ss_pred             CCCccceEEEeccHhhHH
Confidence             46789999999984443

>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]

Probab=93.45  E-value=0.025  Score=56.23  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=71.3

Q ss_pred             cccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecH
Q 041003          182 RCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHP  261 (282)
Q Consensus       182 r~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~  261 (282)
                      +..-...|..+|.||.++|-|+ +.  .+.+.+.+..+.-||.+.. =...+||||+.+  ..++---.+.....++|.-
T Consensus       200 ~~f~d~hrl~~feg~~~~f~gF-~~--ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e--~~~~~~p~~~s~~~~~vk~  273 (850)
T KOG3524|consen  200 PCFVDKHRLGVFEGLSLFFHGF-KQ--EEIDDMLRSLENTGGKLAP-SDTLCTHVVVNE--DNDEVEPLAVSSNQVHVKK  273 (850)
T ss_pred             cchhhhhccccccCCeEeecCC-cH--HHHHHHHHHHHhcCCcccC-CCCCceeEeecC--Cccccccccccccceeecc
Confidence            4455667888999999999997 32  2467788899999999998 567899999993  2222222345556789999


Q ss_pred             HHHHHHHHhCCcCCCCCCC
Q 041003          262 QWIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       262 ~WL~~c~~~~~r~~E~~y~  280 (282)
                      +|.+-++..+.+.-|..|.
T Consensus       274 ewfw~siq~g~~a~e~~yl  292 (850)
T KOG3524|consen  274 EWFWVSIQRGCCAIEDNYL  292 (850)
T ss_pred             cceEEEEecchhcccccee
Confidence            9999888888888888774

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=93.39  E-value=0.16  Score=43.65  Aligned_cols=52  Identities=25%  Similarity=0.185  Sum_probs=39.7

Q ss_pred             EEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcHHHHH
Q 041003           14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAM   92 (282)
Q Consensus        14 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~   92 (282)
                      +++||||||+++...                                  .-|...+.|+++. +-..+++.|.-....+.
T Consensus         1 i~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~   46 (254)
T PF08282_consen    1 IFSDLDGTLLNSDGK----------------------------------ISPETIEALKELQEKGIKLVIATGRSYSSIK   46 (254)
T ss_dssp             EEEECCTTTCSTTSS----------------------------------SCHHHHHHHHHHHHTTCEEEEECSSTHHHHH
T ss_pred             cEEEECCceecCCCe----------------------------------eCHHHHHHHHhhcccceEEEEEccCcccccc
Confidence            689999999995432                                  2245567777775 67889999999888888


Q ss_pred             HHHhhhc
Q 041003           93 MMAKLLN   99 (282)
Q Consensus        93 ~v~~~ld   99 (282)
                      .+++.+.
T Consensus        47 ~~~~~~~   53 (254)
T PF08282_consen   47 RLLKELG   53 (254)
T ss_dssp             HHHHHTT
T ss_pred             ccccccc
Confidence            8888664

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=93.28  E-value=0.091  Score=43.66  Aligned_cols=79  Identities=13%  Similarity=0.103  Sum_probs=53.4

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      ..+.||+.++|+.+. ..+.+.|-|++.  .+..+++.++-. .+|  +.+++.++-..      .+.+-+++++-+.++
T Consensus        86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~  160 (185)
T TIGR01990        86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYF--DAIVDPAEIKKGKPDPEIFLAAAEGLGVSPSE  160 (185)
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhC--cEEEehhhcCCCCCChHHHHHHHHHcCCCHHH
Confidence            367899999999996 458999999864  356677776543 356  55665554321      123344445557789


Q ss_pred             eEEEcCChhhh
Q 041003          134 VVIVDDTEKVW  144 (282)
Q Consensus       134 vvivDd~~~~~  144 (282)
                      +|+|+|++.-.
T Consensus       161 ~v~vgD~~~di  171 (185)
T TIGR01990       161 CIGIEDAQAGI  171 (185)
T ss_pred             eEEEecCHHHH
Confidence            99999997433

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=93.15  E-value=0.14  Score=43.13  Aligned_cols=79  Identities=20%  Similarity=0.174  Sum_probs=54.4

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC---C------cee--cc----
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE---K------GKK--SG----  124 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~------~~K--dL----  124 (282)
                      +..+||+.++|+.+. +-+.++|.|++...+++.+++.+.... +| .+.+.+.+....   .      .-|  -+    
T Consensus        79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~-~~-~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~  156 (201)
T TIGR01491        79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY-VY-SNELVFDEKGFIQPDGIVRVTFDNKGEAVERLK  156 (201)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe-EE-EEEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence            568999999999996 469999999999999999999987543 45 444443322110   0      001  11    


Q ss_pred             ccccccCCceEEEcCCh
Q 041003          125 DLVLRQEWGVVIVDDTE  141 (282)
Q Consensus       125 ~~l~~~~~~vvivDd~~  141 (282)
                      +.++.+.+++++|.|+.
T Consensus       157 ~~~~~~~~~~i~iGDs~  173 (201)
T TIGR01491       157 RELNPSLTETVAVGDSK  173 (201)
T ss_pred             HHhCCCHHHEEEEcCCH
Confidence            22333577899999987

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=93.10  E-value=0.24  Score=43.96  Aligned_cols=58  Identities=21%  Similarity=0.169  Sum_probs=47.4

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHH-hcCceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKA-SKMYDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~-~~~yei~i~T~~~~~   89 (282)
                      ...+++||||||+.+...                                  ..|...+.|+++ ++-..++|-|.....
T Consensus         3 ~kli~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~~~~~g~~v~iaTGR~~~   48 (264)
T COG0561           3 IKLLAFDLDGTLLDSNKT----------------------------------ISPETKEALARLREKGVKVVLATGRPLP   48 (264)
T ss_pred             eeEEEEcCCCCccCCCCc----------------------------------cCHHHHHHHHHHHHCCCEEEEECCCChH
Confidence            567899999999988542                                  456677888877 577899999999999


Q ss_pred             HHHHHHhhhcCCC
Q 041003           90 YAMMMAKLLNPKC  102 (282)
Q Consensus        90 Ya~~v~~~ldp~~  102 (282)
                      .+.++++.|...+
T Consensus        49 ~~~~~~~~l~~~~   61 (264)
T COG0561          49 DVLSILEELGLDG   61 (264)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999988775

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=93.06  E-value=0.19  Score=41.73  Aligned_cols=40  Identities=5%  Similarity=0.045  Sum_probs=36.0

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcC
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNP  100 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp  100 (282)
                      +.++||+.++|+.+.+ .+.++|.|++...+++.+++.++-
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l  111 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGE  111 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCC
Confidence            6899999999999965 599999999999999999988753

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=92.97  E-value=0.047  Score=50.52  Aligned_cols=41  Identities=7%  Similarity=0.132  Sum_probs=36.1

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCC
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPK  101 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~  101 (282)
                      +.++||+.++|+.+.+ -+.+.|.|+|...+++.+.+.++-.
T Consensus       180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld  221 (322)
T PRK11133        180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLD  221 (322)
T ss_pred             CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCC
Confidence            6689999999999975 4899999999999999999887543

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=92.80  E-value=0.22  Score=45.92  Aligned_cols=52  Identities=17%  Similarity=0.167  Sum_probs=36.4

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-----CceEEEEcCC
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-----MYDIYLCTTR   86 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-----~yei~i~T~~   86 (282)
                      +.+++|+||||+++..                                   .-||..++++.+..     ...+.+.|++
T Consensus         1 ~~~ifD~DGvL~~g~~-----------------------------------~i~ga~eal~~L~~~~~~~g~~~~flTNn   45 (321)
T TIGR01456         1 FGFAFDIDGVLFRGKK-----------------------------------PIAGASDALRRLNRNQGQLKIPYIFLTNG   45 (321)
T ss_pred             CEEEEeCcCceECCcc-----------------------------------ccHHHHHHHHHHhccccccCCCEEEEecC
Confidence            4689999999998743                                   23677777877765     5677777776


Q ss_pred             c----HHHHHHHHhhh
Q 041003           87 I----RSYAMMMAKLL   98 (282)
Q Consensus        87 ~----~~Ya~~v~~~l   98 (282)
                      .    +.+|+.+.+.+
T Consensus        46 ~g~s~~~~~~~l~~~l   61 (321)
T TIGR01456        46 GGFSERARAEEISSLL   61 (321)
T ss_pred             CCCCHHHHHHHHHHHc
Confidence            4    55666664443

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=92.75  E-value=0.23  Score=43.44  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=26.2

Q ss_pred             ccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcC
Q 041003           65 SYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNP  100 (282)
Q Consensus        65 P~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp  100 (282)
                      |...++|+++.+. ..+++.|.-++.-+..+++.+..
T Consensus        18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~   54 (225)
T TIGR02461        18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGV   54 (225)
T ss_pred             hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC
Confidence            3467788887654 78888888877777777777753

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=92.74  E-value=0.18  Score=53.92  Aligned_cols=81  Identities=6%  Similarity=-0.004  Sum_probs=63.0

Q ss_pred             ecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCceE
Q 041003           63 VRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGVV  135 (282)
Q Consensus        63 ~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~vv  135 (282)
                      ..||+.++|++|. +-+.+.|.|++.+.+++.+++.+.-...+|  +.+++.+++..      .+.+-+++++-+.++++
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~F--d~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v  239 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMF--DAIVSADAFENLKPAPDIFLAAAKILGVPTSECV  239 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHC--CEEEECcccccCCCCHHHHHHHHHHcCcCcccEE
Confidence            5799999999996 469999999999999999999886544467  67787777652      23444555666788999


Q ss_pred             EEcCChhhhh
Q 041003          136 IVDDTEKVWK  145 (282)
Q Consensus       136 ivDd~~~~~~  145 (282)
                      +|+|++.-..
T Consensus       240 ~IgDs~~Di~  249 (1057)
T PLN02919        240 VIEDALAGVQ  249 (1057)
T ss_pred             EEcCCHHHHH
Confidence            9999984443

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=92.62  E-value=0.2  Score=42.48  Aligned_cols=45  Identities=9%  Similarity=0.083  Sum_probs=38.3

Q ss_pred             EEEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCccc
Q 041003           60 LVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYH  105 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f  105 (282)
                      .+..+||+.+||+.+.+.+.++|.|++.+.+++.+++.++-.. +|
T Consensus        66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~~-~f  110 (205)
T PRK13582         66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWPT-LF  110 (205)
T ss_pred             hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCch-hh
Confidence            3567899999999998669999999999999999999886442 45

>PRK05601 DNA polymerase III subunit epsilon; Validated

Probab=92.50  E-value=0.26  Score=46.32  Aligned_cols=75  Identities=12%  Similarity=0.010  Sum_probs=63.1

Q ss_pred             eecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       192 vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      .-.|..|+|+|-+..+   +..|...+...|-.++..++..+.=|||......+.|..+|...||++++-.=...++.
T Consensus       294 lv~Gm~v~~~~e~~~~---~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~  368 (377)
T PRK05601        294 LVAGMEVVVAPEITMD---PDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVE  368 (377)
T ss_pred             cccCcEEEEeCCccCC---HHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHH
Confidence            4579999999976654   78899999999999999999999999998545678899999999999998766555544

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=92.32  E-value=0.27  Score=42.36  Aligned_cols=35  Identities=17%  Similarity=0.289  Sum_probs=28.7

Q ss_pred             HHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCC
Q 041003           67 IRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPK  101 (282)
Q Consensus        67 l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~  101 (282)
                      ..+.|+.+.+ ...+++.|......+.++++.+.-.
T Consensus        21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~   56 (221)
T TIGR02463        21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT   56 (221)
T ss_pred             HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence            5677888765 4799999999999999999988643

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=92.21  E-value=0.23  Score=48.03  Aligned_cols=77  Identities=9%  Similarity=0.121  Sum_probs=56.7

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-----CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-----~~~KdL~~l~~~~~~v  134 (282)
                      +.+.||+.++|+.+. +.+.+.|.|++.+.++..+++.++-.. +|  +.+++.++...     .+.+-++.+  +++.+
T Consensus       329 ~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f--~~i~~~d~v~~~~kP~~~~~al~~l--~~~~~  403 (459)
T PRK06698        329 GALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WV--TETFSIEQINSLNKSDLVKSILNKY--DIKEA  403 (459)
T ss_pred             CCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hc--ceeEecCCCCCCCCcHHHHHHHHhc--CcceE
Confidence            567899999999996 569999999999999999999876544 57  55677665421     111222222  45789


Q ss_pred             EEEcCChh
Q 041003          135 VIVDDTEK  142 (282)
Q Consensus       135 vivDd~~~  142 (282)
                      ++|.|++.
T Consensus       404 v~VGDs~~  411 (459)
T PRK06698        404 AVVGDRLS  411 (459)
T ss_pred             EEEeCCHH
Confidence            99999983

>TIGR01675 plant-AP plant acid phosphatase

Probab=92.14  E-value=0.69  Score=40.75  Aligned_cols=119  Identities=14%  Similarity=-0.065  Sum_probs=69.2

Q ss_pred             cCCCeeEEEeCCCceeeeeccCcc---c-----h-hhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cC
Q 041003            8 RQKKLHLVLDLDQTLPHAVDIDIL---A-----S-KDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KM   77 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~~~---~-----~-~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~   77 (282)
                      ..+|..+|||+|||++....-...   +     + .+..+..              .+   --.--|+..+|++.+. .-
T Consensus        74 ~dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~--------------~~---~apaip~al~l~~~l~~~G  136 (229)
T TIGR01675        74 GDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLG--------------KG---AAPALPEGLKLYQKIIELG  136 (229)
T ss_pred             CCCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHH--------------cC---CCCCCHHHHHHHHHHHHCC
Confidence            458999999999999987531000   0     0 0001100              00   0135689999999985 56


Q ss_pred             ceEEEEcCCcHHHHHHHHhhhcCCCccccc-ccEEEccC-CCC---Cceecccc--c-cccCCceEEEcCChhhhh
Q 041003           78 YDIYLCTTRIRSYAMMMAKLLNPKCEYHIS-SRLITRED-FKE---KGKKSGDL--V-LRQEWGVVIVDDTEKVWK  145 (282)
Q Consensus        78 yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~-~rv~~r~~-~~~---~~~KdL~~--l-~~~~~~vvivDd~~~~~~  145 (282)
                      ++|++.|.-.........+.|.-.|  |++ ++++-|.. ...   ...|+-.+  + ..+-+-+..|+|+..-+.
T Consensus       137 ~~Vf~lTGR~e~~r~~T~~nL~~~G--~~~~~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~  210 (229)
T TIGR01675       137 IKIFLLSGRWEELRNATLDNLINAG--FTGWKHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLL  210 (229)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHHcC--CCCcCeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhc
Confidence            9999999988877777777775555  322 56666752 111   11132211  1 134566777888764443

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=92.07  E-value=0.28  Score=41.42  Aligned_cols=60  Identities=8%  Similarity=-0.105  Sum_probs=38.7

Q ss_pred             cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcCCh
Q 041003           76 KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTE  141 (282)
Q Consensus        76 ~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd~~  141 (282)
                      +.+++.|-|+.....+..+++.+.-.. +| .+    .++-.....+-+..++-+.+.+++|-|+.
T Consensus        63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f-~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~  122 (183)
T PRK09484         63 SGIEVAIITGRKSKLVEDRMTTLGITH-LY-QG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDL  122 (183)
T ss_pred             CCCEEEEEeCCCcHHHHHHHHHcCCce-ee-cC----CCcHHHHHHHHHHHhCCCHHHEEEECCCH
Confidence            679999999999999999999986443 44 11    00000011122333445678899998886

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=91.91  E-value=0.66  Score=41.43  Aligned_cols=92  Identities=14%  Similarity=0.056  Sum_probs=56.6

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHh-hhhh---cCCCCC--Ccce--ee---cceeEEEEecccHHHHHHHHhc-C
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKY-LMKQ---RGSSSD--GDLF--KM---ASELFLVKVRSYIRKFLKKASK-M   77 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~-~~~~---~~~~~d--~~~~--~~---~~~~~~v~~RP~l~~FL~~~~~-~   77 (282)
                      ....+|+|+|+||+-+. .+-.++.+... ...-   ..+..+  ...+  .+   ....-....=|.+-++++.+++ .
T Consensus        19 ~~tLvvfDiDdTLi~~~-~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~   97 (252)
T PF11019_consen   19 QDTLVVFDIDDTLITPK-QPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKG   97 (252)
T ss_pred             CCeEEEEEcchhhhcCc-cccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCC
Confidence            56788999999999876 33333222211 1110   000000  0000  00   1122345677899999999985 5


Q ss_pred             ceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003           78 YDIYLCTTRIRSYAMMMAKLLNPKC  102 (282)
Q Consensus        78 yei~i~T~~~~~Ya~~v~~~ldp~~  102 (282)
                      .-++..|+..+.|...-++.|--.|
T Consensus        98 ~~v~alT~~~~~~~~~t~~~Lk~~g  122 (252)
T PF11019_consen   98 IPVIALTARGPNMEDWTLRELKSLG  122 (252)
T ss_pred             CcEEEEcCCChhhHHHHHHHHHHCC
Confidence            9999999999999999988874333

The function is not known.

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=91.77  E-value=0.21  Score=43.53  Aligned_cols=81  Identities=16%  Similarity=0.158  Sum_probs=58.0

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC--------CCceecccc----cc
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK--------EKGKKSGDL----VL  128 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~--------~~~~KdL~~----l~  128 (282)
                      +|.-|-|++||-+|.+.+ .++||+|.+..|..+++.|.-... |  ..|++-+-..        ++..+...+    .+
T Consensus        99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieDc-F--egii~~e~~np~~~~~vcKP~~~afE~a~k~ag  174 (244)
T KOG3109|consen   99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIEDC-F--EGIICFETLNPIEKTVVCKPSEEAFEKAMKVAG  174 (244)
T ss_pred             cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHHh-c--cceeEeeccCCCCCceeecCCHHHHHHHHHHhC
Confidence            777888999999998888 999999999999999999977653 5  4455433221        111222222    22


Q ss_pred             -ccCCceEEEcCChhhhh
Q 041003          129 -RQEWGVVIVDDTEKVWK  145 (282)
Q Consensus       129 -~~~~~vvivDd~~~~~~  145 (282)
                       .++++++++||+...-.
T Consensus       175 i~~p~~t~FfDDS~~NI~  192 (244)
T KOG3109|consen  175 IDSPRNTYFFDDSERNIQ  192 (244)
T ss_pred             CCCcCceEEEcCchhhHH
Confidence             25899999999986554

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=91.76  E-value=0.37  Score=42.54  Aligned_cols=54  Identities=22%  Similarity=0.198  Sum_probs=40.1

Q ss_pred             EEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHHHH
Q 041003           14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAM   92 (282)
Q Consensus        14 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~   92 (282)
                      +++||||||+....  .                                ..|...+.|+++.+ -..+++.|......+.
T Consensus         2 i~~DlDGTLl~~~~--~--------------------------------i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~   47 (256)
T TIGR00099         2 IFIDLDGTLLNDDH--T--------------------------------ISPSTKEALAKLREKGIKVVLATGRPYKEVK   47 (256)
T ss_pred             EEEeCCCCCCCCCC--c--------------------------------cCHHHHHHHHHHHHCCCeEEEEeCCCHHHHH
Confidence            78999999997532  1                                23455667777764 4889999998888888


Q ss_pred             HHHhhhcCC
Q 041003           93 MMAKLLNPK  101 (282)
Q Consensus        93 ~v~~~ldp~  101 (282)
                      .+++.+...
T Consensus        48 ~~~~~~~~~   56 (256)
T TIGR00099        48 NILKELGLD   56 (256)
T ss_pred             HHHHHcCCC
Confidence            888887655

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=91.66  E-value=0.36  Score=40.91  Aligned_cols=35  Identities=17%  Similarity=0.091  Sum_probs=29.0

Q ss_pred             cccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhh
Q 041003           64 RSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLL   98 (282)
Q Consensus        64 RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~l   98 (282)
                      .|.+.+.|+++.+. ..+++-|.....++..+++.+
T Consensus        19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~   54 (204)
T TIGR01484        19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL   54 (204)
T ss_pred             CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence            46778888888765 788999999999999988875

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=91.61  E-value=0.44  Score=42.27  Aligned_cols=57  Identities=18%  Similarity=0.150  Sum_probs=37.8

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~   89 (282)
                      ...+++||||||++...  ..+                                |...+-|+++.+. ..+++.|.-...
T Consensus         3 ~kli~~DlDGTLl~~~~--~i~--------------------------------~~~~~ai~~l~~~G~~~~iaTGR~~~   48 (270)
T PRK10513          3 IKLIAIDMDGTLLLPDH--TIS--------------------------------PAVKQAIAAARAKGVNVVLTTGRPYA   48 (270)
T ss_pred             eEEEEEecCCcCcCCCC--ccC--------------------------------HHHHHHHHHHHHCCCEEEEecCCChH
Confidence            35789999999998632  122                                3344556666544 677777777777


Q ss_pred             HHHHHHhhhcCC
Q 041003           90 YAMMMAKLLNPK  101 (282)
Q Consensus        90 Ya~~v~~~ldp~  101 (282)
                      .+.++++.+...
T Consensus        49 ~~~~~~~~l~~~   60 (270)
T PRK10513         49 GVHRYLKELHME   60 (270)
T ss_pred             HHHHHHHHhCCC
Confidence            777777777643

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=91.58  E-value=0.44  Score=40.92  Aligned_cols=56  Identities=21%  Similarity=0.268  Sum_probs=41.8

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYA   91 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya   91 (282)
                      .+++||||||+....                                  ..-|...+-|+++.+. ..+++.|.-....+
T Consensus         3 ~v~~DlDGTLl~~~~----------------------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~   48 (215)
T TIGR01487         3 LVAIDIDGTLTEPNR----------------------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFA   48 (215)
T ss_pred             EEEEecCCCcCCCCc----------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhH
Confidence            679999999995321                                  1345566667777644 88899998888888


Q ss_pred             HHHHhhhcCCC
Q 041003           92 MMMAKLLNPKC  102 (282)
Q Consensus        92 ~~v~~~ldp~~  102 (282)
                      ..+.+.|+..+
T Consensus        49 ~~~~~~l~~~~   59 (215)
T TIGR01487        49 RALAVLIGTSG   59 (215)
T ss_pred             HHHHHHhCCCC
Confidence            88888887664

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=91.55  E-value=0.51  Score=42.17  Aligned_cols=58  Identities=19%  Similarity=0.243  Sum_probs=35.9

Q ss_pred             CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc
Q 041003            9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI   87 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~   87 (282)
                      +.+..+++||||||+++...  .+                                |-..+-|+++.+ -..+++.|.-.
T Consensus         5 ~~~~lI~~DlDGTLL~~~~~--i~--------------------------------~~~~~ai~~l~~~Gi~~viaTGR~   50 (271)
T PRK03669          5 QDPLLIFTDLDGTLLDSHTY--DW--------------------------------QPAAPWLTRLREAQVPVILCSSKT   50 (271)
T ss_pred             CCCeEEEEeCccCCcCCCCc--Cc--------------------------------HHHHHHHHHHHHcCCeEEEEcCCC
Confidence            45667899999999986321  11                                122344555543 36667777666


Q ss_pred             HHHHHHHHhhhcC
Q 041003           88 RSYAMMMAKLLNP  100 (282)
Q Consensus        88 ~~Ya~~v~~~ldp  100 (282)
                      ...+..+++.|+.
T Consensus        51 ~~~i~~~~~~l~~   63 (271)
T PRK03669         51 AAEMLPLQQTLGL   63 (271)
T ss_pred             HHHHHHHHHHhCC
Confidence            6666667776654

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=91.28  E-value=0.41  Score=42.96  Aligned_cols=59  Identities=20%  Similarity=0.038  Sum_probs=40.5

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc--CceEEEEcCCcH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK--MYDIYLCTTRIR   88 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~--~yei~i~T~~~~   88 (282)
                      ++.+++|+||||+.....|...                             ..-|.+.+-|+.+++  ...++|.|.-..
T Consensus        14 ~~li~~D~DGTLl~~~~~p~~~-----------------------------~i~~~~~~~L~~L~~~~g~~v~i~SGR~~   64 (266)
T PRK10187         14 NYAWFFDLDGTLAEIKPHPDQV-----------------------------VVPDNILQGLQLLATANDGALALISGRSM   64 (266)
T ss_pred             CEEEEEecCCCCCCCCCCcccc-----------------------------cCCHHHHHHHHHHHhCCCCcEEEEeCCCH
Confidence            5789999999999865433211                             134777888888875  366777777777


Q ss_pred             HHHHHHHhhh
Q 041003           89 SYAMMMAKLL   98 (282)
Q Consensus        89 ~Ya~~v~~~l   98 (282)
                      .-+..+++.+
T Consensus        65 ~~~~~~~~~~   74 (266)
T PRK10187         65 VELDALAKPY   74 (266)
T ss_pred             HHHHHhcCcc
Confidence            6666666544

>smart00775 LNS2 LNS2 domain

Probab=91.11  E-value=0.43  Score=39.38  Aligned_cols=57  Identities=16%  Similarity=0.169  Sum_probs=36.0

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYA   91 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya   91 (282)
                      .+++|+||||+.+.......                    ..-+..   +..|++.++++++.+. |.+++.|.....-+
T Consensus         1 iVisDIDGTL~~sd~~~~~~--------------------~~~~~~---~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~   57 (157)
T smart00775        1 IVISDIDGTITKSDVLGHVV--------------------PIIGKD---WTHPGVAKLYRDIQNNGYKILYLTARPIGQA   57 (157)
T ss_pred             CEEEecCCCCcccccccccc--------------------cccccC---cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHH
Confidence            37899999999875321111                    000111   2479999999999865 66666666555544


Q ss_pred             H
Q 041003           92 M   92 (282)
Q Consensus        92 ~   92 (282)
                      .
T Consensus        58 ~   58 (157)
T smart00775       58 D   58 (157)
T ss_pred             H
Confidence            3

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]

Probab=90.91  E-value=0.97  Score=46.09  Aligned_cols=67  Identities=13%  Similarity=0.147  Sum_probs=46.4

Q ss_pred             HHHHHHHhCCeEeccc------CCCccEEEEcCCCCCcHHH--HHHHHC--CCceecHHHHHHHHHhCCcCCCCCCC
Q 041003          214 LKWRAGELGAACTDVY------NLSVAQVVSVSSRLGIKGH--RLAEQH--NKFLVHPQWIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       214 l~~~~~~~Ga~v~~~~------~~~vTHlV~~~~~~~t~K~--~~A~~~--gi~IV~~~WL~~c~~~~~r~~E~~y~  280 (282)
                      ..-.++.+|+.+...-      ....||+|+..=+....+.  ..|...  ..+||+|.|+.+|......+||+.|+
T Consensus       805 ~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~~~  881 (881)
T KOG0966|consen  805 IELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEEDFP  881 (881)
T ss_pred             HHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCccccCC
Confidence            3456788899997653      2468999987211222222  222222  33999999999999999999999985

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=90.37  E-value=0.79  Score=40.56  Aligned_cols=56  Identities=21%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++||||||+.+..  ..+                                |...+-|+++.+ -..+++.|.-....
T Consensus         4 kli~~DlDGTLl~~~~--~i~--------------------------------~~~~~ai~~~~~~G~~~~iaTGR~~~~   49 (272)
T PRK10530          4 RVIALDLDGTLLTPKK--TIL--------------------------------PESLEALARAREAGYKVIIVTGRHHVA   49 (272)
T ss_pred             cEEEEeCCCceECCCC--ccC--------------------------------HHHHHHHHHHHHCCCEEEEEcCCChHH
Confidence            4789999999997643  122                                223344444443 35666666655555


Q ss_pred             HHHHHhhhcCC
Q 041003           91 AMMMAKLLNPK  101 (282)
Q Consensus        91 a~~v~~~ldp~  101 (282)
                      +..+++.++..
T Consensus        50 ~~~~~~~l~~~   60 (272)
T PRK10530         50 IHPFYQALALD   60 (272)
T ss_pred             HHHHHHhcCCC
Confidence            66666666544

>PRK10444 UMP phosphatase; Provisional

Probab=90.34  E-value=0.55  Score=41.73  Aligned_cols=51  Identities=18%  Similarity=0.154  Sum_probs=34.6

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYA   91 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya   91 (282)
                      .+++|+||||++...                                   .-||..+|++.+.+ ...+++-|+.+..-+
T Consensus         3 ~v~~DlDGtL~~~~~-----------------------------------~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~   47 (248)
T PRK10444          3 NVICDIDGVLMHDNV-----------------------------------AVPGAAEFLHRILDKGLPLVLLTNYPSQTG   47 (248)
T ss_pred             EEEEeCCCceEeCCe-----------------------------------eCccHHHHHHHHHHCCCeEEEEeCCCCCCH
Confidence            578999999998742                                   13667777777754 466777777666555


Q ss_pred             HHHHhhh
Q 041003           92 MMMAKLL   98 (282)
Q Consensus        92 ~~v~~~l   98 (282)
                      ..+.+.|
T Consensus        48 ~~~~~~l   54 (248)
T PRK10444         48 QDLANRF   54 (248)
T ss_pred             HHHHHHH
Confidence            5555554

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=89.80  E-value=0.64  Score=41.13  Aligned_cols=53  Identities=19%  Similarity=0.253  Sum_probs=39.4

Q ss_pred             EEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHH
Q 041003           14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAM   92 (282)
Q Consensus        14 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~   92 (282)
                      +++||||||+++...                                  .-|...++++.+.+. ..+++.|.-+...+.
T Consensus         2 i~~DlDGTll~~~~~----------------------------------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~   47 (256)
T TIGR01486         2 IFTDLDGTLLDPHGY----------------------------------DWGPAKEVLERLQELGIPVIPCTSKTAAEVE   47 (256)
T ss_pred             EEEcCCCCCcCCCCc----------------------------------CchHHHHHHHHHHHCCCeEEEEcCCCHHHHH
Confidence            689999999976431                                  112356778888754 788888888888888


Q ss_pred             HHHhhhcC
Q 041003           93 MMAKLLNP  100 (282)
Q Consensus        93 ~v~~~ldp  100 (282)
                      ++++.++.
T Consensus        48 ~~~~~~~~   55 (256)
T TIGR01486        48 YLRKELGL   55 (256)
T ss_pred             HHHHHcCC
Confidence            88888763

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=89.64  E-value=0.92  Score=39.10  Aligned_cols=56  Identities=21%  Similarity=0.263  Sum_probs=37.3

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++||||||+.+...                                  +.|...+-|+++.+ -..+++.|.-....
T Consensus         4 kli~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~~~~   49 (230)
T PRK01158          4 KAIAIDIDGTITDKDRR----------------------------------LSLKAVEAIRKAEKLGIPVILATGNVLCF   49 (230)
T ss_pred             eEEEEecCCCcCCCCCc----------------------------------cCHHHHHHHHHHHHCCCEEEEEcCCchHH
Confidence            57899999999965321                                  23445555666654 35777777777777


Q ss_pred             HHHHHhhhcCC
Q 041003           91 AMMMAKLLNPK  101 (282)
Q Consensus        91 a~~v~~~ldp~  101 (282)
                      +.++++.+...
T Consensus        50 ~~~~~~~l~~~   60 (230)
T PRK01158         50 ARAAAKLIGTS   60 (230)
T ss_pred             HHHHHHHhCCC
Confidence            77777777644

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=89.44  E-value=0.8  Score=41.22  Aligned_cols=40  Identities=15%  Similarity=0.118  Sum_probs=29.3

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI   87 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~   87 (282)
                      .+++|+||||++...                                   .-||..++|+++.+ ...+++.|+++
T Consensus         4 ~~~~D~DGtl~~~~~-----------------------------------~~~ga~e~l~~L~~~g~~~~~~Tnns   44 (279)
T TIGR01452         4 GFIFDCDGVLWLGER-----------------------------------VVPGAPELLDRLARAGKAALFVTNNS   44 (279)
T ss_pred             EEEEeCCCceEcCCe-----------------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence            678999999987522                                   23677888888864 46788888754

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=89.12  E-value=0.65  Score=41.38  Aligned_cols=46  Identities=11%  Similarity=0.087  Sum_probs=33.4

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRS   89 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~   89 (282)
                      .+++|+||||++.....  .                             ..-|+..++++++.+ -..+++.|+.+..
T Consensus         3 ~i~~D~DGtl~~~~~~~--~-----------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~~   49 (257)
T TIGR01458         3 GVLLDISGVLYISDAKS--G-----------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTKE   49 (257)
T ss_pred             EEEEeCCCeEEeCCCcc--c-----------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence            68999999999874310  0                             034788999999975 4888888875554

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>TIGR00685 T6PP trehalose-phosphatase

Probab=89.04  E-value=0.36  Score=42.55  Aligned_cols=53  Identities=19%  Similarity=0.137  Sum_probs=35.1

Q ss_pred             CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcH
Q 041003            9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIR   88 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~   88 (282)
                      .||..|+||+||||+-....|..                             .+.-|++.+-|+.|++.....|+=.+.|
T Consensus         1 ~~~~~l~lD~DGTL~~~~~~p~~-----------------------------~~~~~~~~~~L~~L~~~~~~~v~ivSGR   51 (244)
T TIGR00685         1 ARKRAFFFDYDGTLSEIVPDPDA-----------------------------AVVSDRLLTILQKLAARPHNAIWIISGR   51 (244)
T ss_pred             CCcEEEEEecCccccCCcCCCcc-----------------------------cCCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            36788999999999964433211                             1245889999999998766543333333


Q ss_pred             HH
Q 041003           89 SY   90 (282)
Q Consensus        89 ~Y   90 (282)
                      .+
T Consensus        52 ~~   53 (244)
T TIGR00685        52 KF   53 (244)
T ss_pred             Ch
Confidence            44

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=88.49  E-value=0.78  Score=39.36  Aligned_cols=13  Identities=31%  Similarity=0.439  Sum_probs=11.1

Q ss_pred             EEEeCCCceeeee
Q 041003           14 LVLDLDQTLPHAV   26 (282)
Q Consensus        14 LVLDLD~TLihs~   26 (282)
                      +++||||||+.+.
T Consensus         1 i~~DlDGTLl~~~   13 (225)
T TIGR01482         1 IASDIDGTLTDPN   13 (225)
T ss_pred             CeEeccCccCCCC
Confidence            5799999999764

catalyze the same reaction as SPP.

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=88.47  E-value=1.1  Score=39.96  Aligned_cols=15  Identities=27%  Similarity=0.186  Sum_probs=12.5

Q ss_pred             eeEEEeCCCceeeee
Q 041003           12 LHLVLDLDQTLPHAV   26 (282)
Q Consensus        12 l~LVLDLD~TLihs~   26 (282)
                      ..+++||||||+.+.
T Consensus         3 kli~~DlDGTLl~~~   17 (272)
T PRK15126          3 RLAAFDMDGTLLMPD   17 (272)
T ss_pred             cEEEEeCCCcCcCCC
Confidence            478999999999753

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=88.40  E-value=0.94  Score=39.90  Aligned_cols=15  Identities=53%  Similarity=0.634  Sum_probs=12.9

Q ss_pred             CeeEEEeCCCceeee
Q 041003           11 KLHLVLDLDQTLPHA   25 (282)
Q Consensus        11 kl~LVLDLD~TLihs   25 (282)
                      ++.++.||||||+.+
T Consensus         1 ~~li~tDlDGTLl~~   15 (249)
T TIGR01485         1 RLLLVSDLDNTLVDH   15 (249)
T ss_pred             CeEEEEcCCCcCcCC
Confidence            467899999999975

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>PLN02645 phosphoglycolate phosphatase

Probab=88.22  E-value=0.81  Score=41.97  Aligned_cols=58  Identities=9%  Similarity=0.031  Sum_probs=38.3

Q ss_pred             chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEE
Q 041003            5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLC   83 (282)
Q Consensus         5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~   83 (282)
                      .++.+-| .+++|+||||++...                                   .=||..++|+.+. +...+++-
T Consensus        23 ~~~~~~~-~~~~D~DGtl~~~~~-----------------------------------~~~ga~e~l~~lr~~g~~~~~~   66 (311)
T PLN02645         23 ELIDSVE-TFIFDCDGVIWKGDK-----------------------------------LIEGVPETLDMLRSMGKKLVFV   66 (311)
T ss_pred             HHHHhCC-EEEEeCcCCeEeCCc-----------------------------------cCcCHHHHHHHHHHCCCEEEEE
Confidence            3444433 679999999987632                                   1177888888886 45788888


Q ss_pred             cCCcHHHHHHHHhhh
Q 041003           84 TTRIRSYAMMMAKLL   98 (282)
Q Consensus        84 T~~~~~Ya~~v~~~l   98 (282)
                      |+.+..-...+++.|
T Consensus        67 TN~~~~~~~~~~~~l   81 (311)
T PLN02645         67 TNNSTKSRAQYGKKF   81 (311)
T ss_pred             eCCCCCCHHHHHHHH
Confidence            887744444444443

>PRK10976 putative hydrolase; Provisional

Probab=87.78  E-value=1.3  Score=39.20  Aligned_cols=15  Identities=33%  Similarity=0.224  Sum_probs=12.8

Q ss_pred             eeEEEeCCCceeeee
Q 041003           12 LHLVLDLDQTLPHAV   26 (282)
Q Consensus        12 l~LVLDLD~TLihs~   26 (282)
                      ..+++||||||+.+.
T Consensus         3 kli~~DlDGTLl~~~   17 (266)
T PRK10976          3 QVVASDLDGTLLSPD   17 (266)
T ss_pred             eEEEEeCCCCCcCCC
Confidence            478999999999764

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=87.63  E-value=0.74  Score=39.63  Aligned_cols=49  Identities=8%  Similarity=0.118  Sum_probs=41.3

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEE
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLI  111 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~  111 (282)
                      +.++||+.+|++.+.+.+.++|-|++...++.++++.++-.. +| .+++.
T Consensus        67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~~-~~-an~l~  115 (203)
T TIGR02137        67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LL-CHKLE  115 (203)
T ss_pred             CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCch-hh-ceeeE
Confidence            568999999999998778999999999999999999987553 45 44443

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=86.99  E-value=0.99  Score=40.72  Aligned_cols=53  Identities=17%  Similarity=0.104  Sum_probs=39.2

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~   89 (282)
                      .-...+||||||++...                                   .=||..+||+.+.+. -.+++-||++..
T Consensus         8 y~~~l~DlDGvl~~G~~-----------------------------------~ipga~e~l~~L~~~g~~~iflTNn~~~   52 (269)
T COG0647           8 YDGFLFDLDGVLYRGNE-----------------------------------AIPGAAEALKRLKAAGKPVIFLTNNSTR   52 (269)
T ss_pred             cCEEEEcCcCceEeCCc-----------------------------------cCchHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            34678999999997643                                   238999999999765 778888888766


Q ss_pred             HHHHHHhhh
Q 041003           90 YAMMMAKLL   98 (282)
Q Consensus        90 Ya~~v~~~l   98 (282)
                      -.+.+.+.|
T Consensus        53 s~~~~~~~L   61 (269)
T COG0647          53 SREVVAARL   61 (269)
T ss_pred             CHHHHHHHH
Confidence            555555444

>PLN02423 phosphomannomutase

Probab=86.85  E-value=1.4  Score=38.93  Aligned_cols=18  Identities=22%  Similarity=0.303  Sum_probs=13.6

Q ss_pred             CCCeeEEEeCCCceeeee
Q 041003            9 QKKLHLVLDLDQTLPHAV   26 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~   26 (282)
                      +.|..+++||||||+.+.
T Consensus         5 ~~~~i~~~D~DGTLl~~~   22 (245)
T PLN02423          5 KPGVIALFDVDGTLTAPR   22 (245)
T ss_pred             ccceEEEEeccCCCcCCC
Confidence            345566699999999764

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=86.72  E-value=0.68  Score=40.60  Aligned_cols=77  Identities=13%  Similarity=0.083  Sum_probs=51.1

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      +..-||+.++|+.+.+.|.+.|-|+|+..     ++...- ..+|  +.+++.++...      .+.+-+++++-+.+.+
T Consensus       112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl-~~~f--d~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~  183 (238)
T PRK10748        112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGL-GDYF--EFVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEI  183 (238)
T ss_pred             CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCc-HHhh--ceeEecccCCcCCCcHHHHHHHHHHcCCChhHE
Confidence            55669999999999888999999998875     233221 2356  55665554321      1233344555678899


Q ss_pred             EEEcCCh--hhhh
Q 041003          135 VIVDDTE--KVWK  145 (282)
Q Consensus       135 vivDd~~--~~~~  145 (282)
                      ++|.|++  ++-.
T Consensus       184 ~~VGD~~~~Di~~  196 (238)
T PRK10748        184 LHVGDDLTTDVAG  196 (238)
T ss_pred             EEEcCCcHHHHHH
Confidence            9998873  5554

>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]

Probab=86.52  E-value=1.1  Score=36.41  Aligned_cols=30  Identities=20%  Similarity=0.538  Sum_probs=26.3

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHH
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSY   90 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Y   90 (282)
                      ...-||.++-++++.+.|+++|-|++...|
T Consensus        67 L~V~p~aq~v~keLt~~y~vYivtaamdhp   96 (180)
T COG4502          67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHP   96 (180)
T ss_pred             cCccccHHHHHHHHHhhheEEEEEeccCCc
Confidence            567799999999999999999999995544

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=86.50  E-value=1.4  Score=36.04  Aligned_cols=47  Identities=15%  Similarity=0.143  Sum_probs=38.8

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCccccccc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSR  109 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~r  109 (282)
                      +.++||+.++++.+.+ .+.++|.|++.+.|++++++.+.-.. +| +.+
T Consensus        72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~-~~-~~~  119 (177)
T TIGR01488        72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD-VF-ANR  119 (177)
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch-he-eee
Confidence            5579999999999964 58999999999999999999886543 44 444

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=86.45  E-value=0.37  Score=46.57  Aligned_cols=109  Identities=23%  Similarity=0.252  Sum_probs=63.3

Q ss_pred             hcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeec----ceeEEEEecccHHHHHHHHhc-CceEE
Q 041003            7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMA----SELFLVKVRSYIRKFLKKASK-MYDIY   81 (282)
Q Consensus         7 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~~v~~RP~l~~FL~~~~~-~yei~   81 (282)
                      -+..|..||||||+||+-..-... +             +   .-++++    |..++     -+++|...+.+ -+=+.
T Consensus       218 ~g~~kK~LVLDLDNTLWGGVIGed-G-------------v---~GI~Ls~~~~G~~fk-----~fQ~~Ik~l~kqGVlLa  275 (574)
T COG3882         218 SGKSKKALVLDLDNTLWGGVIGED-G-------------V---DGIRLSNSAEGEAFK-----TFQNFIKGLKKQGVLLA  275 (574)
T ss_pred             hCcccceEEEecCCcccccccccc-c-------------c---cceeecCCCCchhHH-----HHHHHHHHHHhccEEEE
Confidence            456788999999999998764311 1             1   112221    11111     25677777764 46788


Q ss_pred             EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC------CCceecc----ccccccCCceEEEcCChhhhh
Q 041003           82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK------EKGKKSG----DLVLRQEWGVVIVDDTEKVWK  145 (282)
Q Consensus        82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~------~~~~KdL----~~l~~~~~~vvivDd~~~~~~  145 (282)
                      |.|-.+..=|..+... -|.       -|+.-++..      ....-++    ++++-+....|++||+|.-..
T Consensus       276 v~SKN~~~da~evF~k-hp~-------MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE  341 (574)
T COG3882         276 VCSKNTEKDAKEVFRK-HPD-------MILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERE  341 (574)
T ss_pred             EecCCchhhHHHHHhh-CCC-------eEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHH
Confidence            8888888877777642 122       234233211      1112233    345568899999999995553

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=86.41  E-value=2.1  Score=36.46  Aligned_cols=39  Identities=5%  Similarity=0.181  Sum_probs=35.3

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLN   99 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ld   99 (282)
                      +++|||.++|.+++.++ -.++|-|+|...|..++.+.|-
T Consensus        72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~iv  111 (220)
T COG4359          72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIV  111 (220)
T ss_pred             cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhc
Confidence            78999999999999765 7899999999999999998764

>PLN02887 hydrolase family protein

Probab=86.38  E-value=1.5  Score=43.89  Aligned_cols=64  Identities=22%  Similarity=0.245  Sum_probs=41.2

Q ss_pred             ccchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEE
Q 041003            3 SEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIY   81 (282)
Q Consensus         3 ~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~   81 (282)
                      ..|..+.+...+++||||||+.+..  ..+                                |.-.+-++++. +-..++
T Consensus       300 ~~~~~~~~iKLIa~DLDGTLLn~d~--~Is--------------------------------~~t~eAI~kl~ekGi~~v  345 (580)
T PLN02887        300 SLRFYKPKFSYIFCDMDGTLLNSKS--QIS--------------------------------ETNAKALKEALSRGVKVV  345 (580)
T ss_pred             chhhhccCccEEEEeCCCCCCCCCC--ccC--------------------------------HHHHHHHHHHHHCCCeEE
Confidence            3456677777899999999997632  122                                22334455554 346777


Q ss_pred             EEcCCcHHHHHHHHhhhcC
Q 041003           82 LCTTRIRSYAMMMAKLLNP  100 (282)
Q Consensus        82 i~T~~~~~Ya~~v~~~ldp  100 (282)
                      |.|.-...-+..+++.++.
T Consensus       346 IATGR~~~~i~~~l~~L~l  364 (580)
T PLN02887        346 IATGKARPAVIDILKMVDL  364 (580)
T ss_pred             EEcCCCHHHHHHHHHHhCc
Confidence            7776666666667776653

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=86.11  E-value=1.5  Score=39.46  Aligned_cols=64  Identities=19%  Similarity=0.090  Sum_probs=50.8

Q ss_pred             cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCce--EE
Q 041003            4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYD--IY   81 (282)
Q Consensus         4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~ye--i~   81 (282)
                      +.....+|..++||.||||.+-...|...                             ..=|++.+-|..|+..+.  ++
T Consensus        11 ~~~~~a~~~~~~lDyDGTl~~i~~~p~~a-----------------------------~~~~~l~~lL~~Las~~~~~v~   61 (266)
T COG1877          11 EPYLNARKRLLFLDYDGTLTEIVPHPEAA-----------------------------VPDDRLLSLLQDLASDPRNVVA   61 (266)
T ss_pred             cccccccceEEEEeccccccccccCcccc-----------------------------CCCHHHHHHHHHHHhcCCCeEE
Confidence            45667889999999999999988765332                             133678999999999988  88


Q ss_pred             EEcCCcHHHHHHHHh
Q 041003           82 LCTTRIRSYAMMMAK   96 (282)
Q Consensus        82 i~T~~~~~Ya~~v~~   96 (282)
                      |.|--+..-.+..+.
T Consensus        62 iiSGR~~~~l~~~~~   76 (266)
T COG1877          62 IISGRSLAELERLFG   76 (266)
T ss_pred             EEeCCCHHHHHHhcC
Confidence            888888877777666

>PTZ00174 phosphomannomutase; Provisional

Probab=85.93  E-value=1.4  Score=38.82  Aligned_cols=17  Identities=35%  Similarity=0.499  Sum_probs=14.1

Q ss_pred             CeeEEEeCCCceeeeec
Q 041003           11 KLHLVLDLDQTLPHAVD   27 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~   27 (282)
                      ...+++||||||+++..
T Consensus         5 ~klia~DlDGTLL~~~~   21 (247)
T PTZ00174          5 KTILLFDVDGTLTKPRN   21 (247)
T ss_pred             CeEEEEECcCCCcCCCC
Confidence            45789999999998754

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=85.78  E-value=1  Score=42.13  Aligned_cols=44  Identities=20%  Similarity=0.125  Sum_probs=39.4

Q ss_pred             ceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhh-c
Q 041003           56 SELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLL-N   99 (282)
Q Consensus        56 ~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~l-d   99 (282)
                      ...-|+.+-||+.++|+.+.+ -..+.|-|++...|++.+++.+ +
T Consensus       178 dp~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g  223 (343)
T TIGR02244       178 NPEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLG  223 (343)
T ss_pred             CHHHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhC
Confidence            356788999999999999975 4899999999999999999997 5

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>PTZ00445 p36-lilke protein; Provisional

Probab=85.73  E-value=0.71  Score=40.13  Aligned_cols=67  Identities=12%  Similarity=0.005  Sum_probs=46.8

Q ss_pred             chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEE
Q 041003            5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLC   83 (282)
Q Consensus         5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~   83 (282)
                      .|.+.+=..+++|||+|||-....   +. ++       +. .       ....+.-..+|.+.++++.+.+ .+.|+|-
T Consensus        37 ~L~~~GIk~Va~D~DnTlI~~Hsg---G~-~~-------~~-~-------~~~~~~~~~tpefk~~~~~l~~~~I~v~VV   97 (219)
T PTZ00445         37 LLNECGIKVIASDFDLTMITKHSG---GY-ID-------PD-N-------DDIRVLTSVTPDFKILGKRLKNSNIKISVV   97 (219)
T ss_pred             HHHHcCCeEEEecchhhhhhhhcc---cc-cC-------CC-c-------chhhhhccCCHHHHHHHHHHHHCCCeEEEE
Confidence            466677789999999999874321   10 00       00 0       1122445689999999999975 6999999


Q ss_pred             cCCcHHH
Q 041003           84 TTRIRSY   90 (282)
Q Consensus        84 T~~~~~Y   90 (282)
                      |-+.+.-
T Consensus        98 TfSd~~~  104 (219)
T PTZ00445         98 TFSDKEL  104 (219)
T ss_pred             Eccchhh
Confidence            9998865

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=85.34  E-value=0.42  Score=42.24  Aligned_cols=81  Identities=20%  Similarity=0.139  Sum_probs=46.5

Q ss_pred             hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecc-----eeEEEEecccHHHHHHHHhcC-ce
Q 041003            6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMAS-----ELFLVKVRSYIRKFLKKASKM-YD   79 (282)
Q Consensus         6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~v~~RP~l~~FL~~~~~~-ye   79 (282)
                      .-+.+++.+|||||||.+..+.-  .+     +...+..      .|.-.+     ..---+.=||..+||+.+-++ -.
T Consensus        74 ~~k~K~~aVvlDlDETvLdNs~Y--qg-----y~v~nnk------~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~  140 (274)
T COG2503          74 KKKGKKKAVVLDLDETVLDNSAY--QG-----YQVLNNK------GFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGK  140 (274)
T ss_pred             cccCCCceEEEecchHhhcCccc--cc-----hhhhcCC------CCCccchHHHHhhcccccCccHHHHHHHHHhcCcE
Confidence            44567789999999999987642  11     1110000      011110     001235669999999999655 55


Q ss_pred             EEEEcCCcHHH-HHHHHhhhc
Q 041003           80 IYLCTTRIRSY-AMMMAKLLN   99 (282)
Q Consensus        80 i~i~T~~~~~Y-a~~v~~~ld   99 (282)
                      |+--|+-.++- .++-++-|-
T Consensus       141 ifyiSNR~~~~~~~~T~~nLk  161 (274)
T COG2503         141 IFYISNRDQENEKDGTIENLK  161 (274)
T ss_pred             EEEEeccchhcccchhHHHHH
Confidence            66556655555 455555554

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=85.14  E-value=1.8  Score=38.38  Aligned_cols=47  Identities=9%  Similarity=-0.021  Sum_probs=25.8

Q ss_pred             cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHH
Q 041003          209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWI  264 (282)
Q Consensus       209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL  264 (282)
                      |....+...++.+|.        +..+++.-+|+. ..-+.-|++.|++.|...|-
T Consensus       179 P~~~~~~~~~~~~~~--------~~~~~~~VGD~~-~~Di~~a~~~G~~~v~v~~G  225 (249)
T TIGR01457       179 PNAIIMEKAVEHLGT--------EREETLMVGDNY-LTDIRAGIDAGIDTLLVHTG  225 (249)
T ss_pred             ChHHHHHHHHHHcCC--------CcccEEEECCCc-hhhHHHHHHcCCcEEEEcCC
Confidence            444555566666653        223455542222 23466788888877666664

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>PLN02151 trehalose-phosphatase

Probab=84.91  E-value=1.9  Score=40.51  Aligned_cols=62  Identities=23%  Similarity=0.241  Sum_probs=46.1

Q ss_pred             hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcC
Q 041003            6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTT   85 (282)
Q Consensus         6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~   85 (282)
                      +.+.+++.|+||+||||+--...|.                             -+..-|.+.+-|+.+++.+.++|-|-
T Consensus        93 ~~~~~~~ll~lDyDGTL~PIv~~P~-----------------------------~A~~~~~~~~aL~~La~~~~vaIvSG  143 (354)
T PLN02151         93 KSEGKQIVMFLDYDGTLSPIVDDPD-----------------------------RAFMSKKMRNTVRKLAKCFPTAIVSG  143 (354)
T ss_pred             hhcCCceEEEEecCccCCCCCCCcc-----------------------------cccCCHHHHHHHHHHhcCCCEEEEEC
Confidence            3456789999999999994332211                             12355889999999999899999988


Q ss_pred             CcHHHHHHHHh
Q 041003           86 RIRSYAMMMAK   96 (282)
Q Consensus        86 ~~~~Ya~~v~~   96 (282)
                      -...-.+.++.
T Consensus       144 R~~~~l~~~~~  154 (354)
T PLN02151        144 RCREKVSSFVK  154 (354)
T ss_pred             CCHHHHHHHcC
Confidence            77777766654

>PLN03017 trehalose-phosphatase

Probab=84.85  E-value=2.1  Score=40.37  Aligned_cols=62  Identities=27%  Similarity=0.269  Sum_probs=44.5

Q ss_pred             hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcC
Q 041003            6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTT   85 (282)
Q Consensus         6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~   85 (282)
                      +.+.+++.|+||+||||+-=...|..                             ...-|.+.+-|+++++.+.++|-|-
T Consensus       106 ~~~~k~~llflD~DGTL~Piv~~p~~-----------------------------a~i~~~~~~aL~~La~~~~vaIvSG  156 (366)
T PLN03017        106 ASRGKQIVMFLDYDGTLSPIVDDPDK-----------------------------AFMSSKMRRTVKKLAKCFPTAIVTG  156 (366)
T ss_pred             HhcCCCeEEEEecCCcCcCCcCCccc-----------------------------ccCCHHHHHHHHHHhcCCcEEEEeC
Confidence            34678899999999999932221110                             1234778888999998899999988


Q ss_pred             CcHHHHHHHHh
Q 041003           86 RIRSYAMMMAK   96 (282)
Q Consensus        86 ~~~~Ya~~v~~   96 (282)
                      -...-+..+.+
T Consensus       157 R~~~~l~~~~~  167 (366)
T PLN03017        157 RCIDKVYNFVK  167 (366)
T ss_pred             CCHHHHHHhhc
Confidence            77777776643

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=84.55  E-value=5.8  Score=35.87  Aligned_cols=81  Identities=15%  Similarity=0.031  Sum_probs=49.1

Q ss_pred             cccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-----Cceecc--cc-ccccCCce
Q 041003           64 RSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSG--DL-VLRQEWGV  134 (282)
Q Consensus        64 RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-----~~~KdL--~~-l~~~~~~v  134 (282)
                      =|+..+|++.+. .-++|++-|.-....-+.-++.|.-.|--. -++++-|+.-..     ...|.-  .. +..+-+-+
T Consensus       147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~-~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv  225 (275)
T TIGR01680       147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT-WEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIV  225 (275)
T ss_pred             ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC-cceeeecCCCCCccchhHHHHHHHHHHHHHcCceEE
Confidence            478999999995 568999999988777777777776555211 255666644211     011211  11 12345667


Q ss_pred             EEEcCChhhhh
Q 041003          135 VIVDDTEKVWK  145 (282)
Q Consensus       135 vivDd~~~~~~  145 (282)
                      ..|||+..-+.
T Consensus       226 ~~iGDq~sDl~  236 (275)
T TIGR01680       226 GIIGDQWNDLK  236 (275)
T ss_pred             EEECCCHHhcc
Confidence            77888764443

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=84.46  E-value=1.2  Score=39.03  Aligned_cols=49  Identities=16%  Similarity=0.146  Sum_probs=32.8

Q ss_pred             EEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc----H
Q 041003           14 LVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI----R   88 (282)
Q Consensus        14 LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~----~   88 (282)
                      +++|+||||+.+...                                   =|+..++++.+.+ .+.+.+-|+++    +
T Consensus         1 ~lfD~DGvL~~~~~~-----------------------------------~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~   45 (236)
T TIGR01460         1 FLFDIDGVLWLGHKP-----------------------------------IPGAAEALNRLRAKGKPVVFLTNNSSRSEE   45 (236)
T ss_pred             CEEeCcCccCcCCcc-----------------------------------CcCHHHHHHHHHHCCCeEEEEECCCCCCHH
Confidence            479999999987431                                   2567777777754 37777777544    4


Q ss_pred             HHHHHHHhh
Q 041003           89 SYAMMMAKL   97 (282)
Q Consensus        89 ~Ya~~v~~~   97 (282)
                      .+++.+.++
T Consensus        46 ~~~~~l~~~   54 (236)
T TIGR01460        46 DYAEKLSSL   54 (236)
T ss_pred             HHHHHHHHh
Confidence            555555553

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=84.32  E-value=2  Score=36.46  Aligned_cols=104  Identities=16%  Similarity=0.041  Sum_probs=60.7

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCC---
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTR---   86 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~---   86 (282)
                      ...|+||.||||+--... ......                        -..+.||+.+=|..+. ..|.++|+|+.   
T Consensus         5 ~k~lflDRDGtin~d~~~-yv~~~~------------------------~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi   59 (181)
T COG0241           5 QKALFLDRDGTINIDKGD-YVDSLD------------------------DFQFIPGVIPALLKLQRAGYKLVVVTNQSGI   59 (181)
T ss_pred             CcEEEEcCCCceecCCCc-ccCcHH------------------------HhccCccHHHHHHHHHhCCCeEEEEECCCCc
Confidence            678999999999865432 111010                        1236799999999996 46999999992   


Q ss_pred             -cHHH--------HHHHHhhhcCCCcccccccEEEc-------cCCCCCceec----cccccccCCceEEEcCCh
Q 041003           87 -IRSY--------AMMMAKLLNPKCEYHISSRLITR-------EDFKEKGKKS----GDLVLRQEWGVVIVDDTE  141 (282)
Q Consensus        87 -~~~Y--------a~~v~~~ldp~~~~f~~~rv~~r-------~~~~~~~~Kd----L~~l~~~~~~vvivDd~~  141 (282)
                       +..|        -..+.+.|--.+.-| .+ +++-       .+|.++..+-    ++...-|+++..+|-|+.
T Consensus        60 ~rgyf~~~~f~~~~~~m~~~l~~~gv~i-d~-i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~  132 (181)
T COG0241          60 GRGYFTEADFDKLHNKMLKILASQGVKI-DG-ILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRL  132 (181)
T ss_pred             cccCccHHHHHHHHHHHHHHHHHcCCcc-ce-EEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcH
Confidence             2222        333555555555434 22 3321       1233322222    222334778888888885

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=83.93  E-value=0.64  Score=40.86  Aligned_cols=86  Identities=17%  Similarity=0.096  Sum_probs=47.8

Q ss_pred             CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCc
Q 041003            9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRI   87 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~   87 (282)
                      .+++.+|||+|||++.+...  ..   ........-..++-..+...+..   .-=||..+|++.+.+. ++|++-|.-.
T Consensus        70 ~~~~avv~DIDeTvLsn~~y--~~---~~~~~~~~~~~~~w~~wv~~~~~---~aip~a~~l~~~~~~~G~~V~~iT~R~  141 (229)
T PF03767_consen   70 DKPPAVVFDIDETVLSNSPY--YA---YLIFGGESFSPEDWDEWVASGKA---PAIPGALELYNYARSRGVKVFFITGRP  141 (229)
T ss_dssp             TSEEEEEEESBTTTEEHHHH--HH---HHHHHTHHH-CCHHHHHHHCTGG---EEETTHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCCcEEEEECCcccccCHHH--HH---HHhhccCCCChHHHHHHHhcccC---cccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            57899999999999954321  00   00000000000000000001111   4558999999999755 8999999877


Q ss_pred             HHHHHHHHhhhcCCC
Q 041003           88 RSYAMMMAKLLNPKC  102 (282)
Q Consensus        88 ~~Ya~~v~~~ldp~~  102 (282)
                      ...-+.-++.|.-.|
T Consensus       142 ~~~r~~T~~nL~~~G  156 (229)
T PF03767_consen  142 ESQREATEKNLKKAG  156 (229)
T ss_dssp             TTCHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHHHcC
Confidence            765556666665444

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>PLN02382 probable sucrose-phosphatase

Probab=83.45  E-value=1.8  Score=41.52  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=20.3

Q ss_pred             ccchhcCCCeeEEEeCCCceeee
Q 041003            3 SEMVYRQKKLHLVLDLDQTLPHA   25 (282)
Q Consensus         3 ~~~l~~~~kl~LVLDLD~TLihs   25 (282)
                      +.||-+..++.|+.||||||+.+
T Consensus         1 ~~~~~~~~~~lI~sDLDGTLL~~   23 (413)
T PLN02382          1 MDRLSGSPRLMIVSDLDHTMVDH   23 (413)
T ss_pred             CCcccCCCCEEEEEcCCCcCcCC
Confidence            36788899999999999999965

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=83.28  E-value=2.9  Score=38.30  Aligned_cols=56  Identities=16%  Similarity=0.089  Sum_probs=36.7

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++||||||+.+...  ..                                +-..+-|+++.+ -..+++.|.-+..=
T Consensus         2 KLIftDLDGTLLd~~~~--~~--------------------------------~~a~~aL~~Lk~~GI~vVlaTGRt~~e   47 (302)
T PRK12702          2 RLVLSSLDGSLLDLEFN--SY--------------------------------GAARQALAALERRSIPLVLYSLRTRAQ   47 (302)
T ss_pred             cEEEEeCCCCCcCCCCc--CC--------------------------------HHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence            46799999999986431  11                                224455666654 46777777777766


Q ss_pred             HHHHHhhhcCC
Q 041003           91 AMMMAKLLNPK  101 (282)
Q Consensus        91 a~~v~~~ldp~  101 (282)
                      ...+.+.|.-.
T Consensus        48 v~~l~~~Lgl~   58 (302)
T PRK12702         48 LEHLCRQLRLE   58 (302)
T ss_pred             HHHHHHHhCCC
Confidence            66777777654

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=82.28  E-value=4.3  Score=35.64  Aligned_cols=62  Identities=23%  Similarity=0.148  Sum_probs=42.1

Q ss_pred             CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHH-hcCceEEEEcCCc
Q 041003            9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKA-SKMYDIYLCTTRI   87 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~-~~~yei~i~T~~~   87 (282)
                      +..+.+.+|||+|||-....++..                                   ..-+.++ -.-|+|+..|+-+
T Consensus         5 ~~~~lIFtDlD~TLl~~~ye~~pA-----------------------------------~pv~~el~d~G~~Vi~~SSKT   49 (274)
T COG3769           5 QMPLLIFTDLDGTLLPHSYEWQPA-----------------------------------APVLLELKDAGVPVILCSSKT   49 (274)
T ss_pred             ccceEEEEcccCcccCCCCCCCcc-----------------------------------chHHHHHHHcCCeEEEeccch
Confidence            456788999999999844432111                                   1123334 3569999999888


Q ss_pred             HHHHHHHHhhhcCCCccc
Q 041003           88 RSYAMMMAKLLNPKCEYH  105 (282)
Q Consensus        88 ~~Ya~~v~~~ldp~~~~f  105 (282)
                      +.=-....+.|+-++..|
T Consensus        50 ~aE~~~l~~~l~v~~~p~   67 (274)
T COG3769          50 RAEMLYLQKSLGVQGLPL   67 (274)
T ss_pred             HHHHHHHHHhcCCCCCce
Confidence            877777778888776555

>PLN02580 trehalose-phosphatase

Probab=82.24  E-value=2.6  Score=39.96  Aligned_cols=62  Identities=24%  Similarity=0.266  Sum_probs=47.7

Q ss_pred             hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcC
Q 041003            6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTT   85 (282)
Q Consensus         6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~   85 (282)
                      +.+.++..|+||.||||.--...|.                             -+..-|++.+-|+.+++.+.++|-|-
T Consensus       114 ~~~~k~~~LfLDyDGTLaPIv~~Pd-----------------------------~A~~s~~~~~aL~~La~~~~VAIVSG  164 (384)
T PLN02580        114 FAKGKKIALFLDYDGTLSPIVDDPD-----------------------------RALMSDAMRSAVKNVAKYFPTAIISG  164 (384)
T ss_pred             HhhcCCeEEEEecCCccCCCCCCcc-----------------------------cccCCHHHHHHHHHHhhCCCEEEEeC
Confidence            3466889999999999985433221                             12345899999999999999999998


Q ss_pred             CcHHHHHHHHh
Q 041003           86 RIRSYAMMMAK   96 (282)
Q Consensus        86 ~~~~Ya~~v~~   96 (282)
                      -...-.+..+.
T Consensus       165 R~~~~L~~~l~  175 (384)
T PLN02580        165 RSRDKVYELVG  175 (384)
T ss_pred             CCHHHHHHHhC
Confidence            88887776664

>PLN02954 phosphoserine phosphatase

Probab=82.00  E-value=2.1  Score=36.66  Aligned_cols=45  Identities=20%  Similarity=0.236  Sum_probs=37.7

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCC-ccc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKC-EYH  105 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~-~~f  105 (282)
                      ..++||+.++|+.+.+ .+.++|-|++.+.+++.+++.++-.. .+|
T Consensus        83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~  129 (224)
T PLN02954         83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIF  129 (224)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEE
Confidence            4688999999999965 58999999999999999999976432 355

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=81.75  E-value=0.73  Score=38.95  Aligned_cols=15  Identities=33%  Similarity=0.563  Sum_probs=13.2

Q ss_pred             eEEEeCCCceeeeec
Q 041003           13 HLVLDLDQTLPHAVD   27 (282)
Q Consensus        13 ~LVLDLD~TLihs~~   27 (282)
                      .+++|+||||+.|..
T Consensus         2 ~viFD~DGTLiDs~~   16 (197)
T TIGR01548         2 ALVLDMDGVMADVSQ   16 (197)
T ss_pred             ceEEecCceEEechH
Confidence            479999999999975

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=81.63  E-value=0.77  Score=38.24  Aligned_cols=15  Identities=33%  Similarity=0.306  Sum_probs=13.0

Q ss_pred             eEEEeCCCceeeeec
Q 041003           13 HLVLDLDQTLPHAVD   27 (282)
Q Consensus        13 ~LVLDLD~TLihs~~   27 (282)
                      .+++||||||+.|..
T Consensus         2 ~viFDlDGTL~ds~~   16 (184)
T TIGR01993         2 VWFFDLDNTLYPHSA   16 (184)
T ss_pred             eEEEeCCCCCCCCcc
Confidence            579999999998864

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=81.43  E-value=0.87  Score=37.88  Aligned_cols=42  Identities=17%  Similarity=-0.064  Sum_probs=26.5

Q ss_pred             cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceec
Q 041003          209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVH  260 (282)
Q Consensus       209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~  260 (282)
                      |....+...++.+|..        -.+.|.-+  ....-+..|.+.|++.|.
T Consensus       143 P~p~~~~~~~~~~~~~--------~~~~l~ig--Ds~~di~aA~~aG~~~i~  184 (188)
T PRK10725        143 PAPDTFLRCAQLMGVQ--------PTQCVVFE--DADFGIQAARAAGMDAVD  184 (188)
T ss_pred             CChHHHHHHHHHcCCC--------HHHeEEEe--ccHhhHHHHHHCCCEEEe
Confidence            5566778888888752        12444442  234457778888887664

>PRK11587 putative phosphatase; Provisional

Probab=80.18  E-value=0.94  Score=38.97  Aligned_cols=16  Identities=31%  Similarity=0.459  Sum_probs=14.1

Q ss_pred             eeEEEeCCCceeeeec
Q 041003           12 LHLVLDLDQTLPHAVD   27 (282)
Q Consensus        12 l~LVLDLD~TLihs~~   27 (282)
                      ..+++||||||+.|..
T Consensus         4 k~viFDlDGTL~Ds~~   19 (218)
T PRK11587          4 KGFLFDLDGTLVDSLP   19 (218)
T ss_pred             CEEEEcCCCCcCcCHH
Confidence            4789999999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
3ef0_A	372	The Structure Of Fcp1, An Essential Rna Polymerase		2e-08
3ef1_A	442	The Structure Of Fcp1, An Essential Rna Polymerase		3e-07

>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 37/167 (22%)
Query: 1   MNSEMVYR---QKKLHLVLDLDQTLPHA---------------VDIDILASKDRKYLMKQ 42
           + SE V R   +K+L L++DLDQT+ HA               V+ D+L  +D +    Q
Sbjct: 5   LESENVKRLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVL--RDVRSFNLQ 62
Query: 43  RGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKC 102
            G S         +  + +K R  + +FL+K S++Y++++ T   ++YA  +AK+++P  
Sbjct: 63  EGPSG-------YTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTG 115
Query: 103 EYHISSRLITREDFKEKGKKSGDLVLRQEWG-----VVIVDDTEKVW 144
           +     R+++R+D     +KS    LR+ +      VV++DD   VW
Sbjct: 116 KL-FQDRVLSRDDSGSLAQKS----LRRLFPCDTSMVVVIDDRGDVW 157

>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 84/167 (50%), Gaps = 37/167 (22%)
Query: 1   MNSEMVYR---QKKLHLVLDLDQTLPHA---------------VDIDILASKDRKYLMKQ 42
           + SE V R   +K+L L++ LDQT+ HA               V+ D+L  +D +    Q
Sbjct: 13  LESENVKRLRQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVL--RDVRSFNLQ 70
Query: 43  RGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKC 102
            G S         +  + +K R  + +FL+K S++Y++++ T   ++YA  +AK+++P  
Sbjct: 71  EGPSG-------YTSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTG 123
Query: 103 EYHISSRLITREDFKEKGKKSGDLVLRQEWG-----VVIVDDTEKVW 144
           +     R+++R+D     +KS    LR+ +      VV++DD   VW
Sbjct: 124 KL-FQDRVLSRDDSGSLAQKS----LRRLFPCDTSMVVVIDDRGDVW 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	7e-22
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	3e-14
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	3e-20
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	2e-12
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	3e-09
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	8e-09
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	1e-07
3l3e_A	107	DNA topoisomerase 2-binding protein 1; BRCT domain	5e-07
2d8m_A	129	DNA-repair protein XRCC1; parallel beta-sheet, DNA	1e-04
3olc_X	298	DNA topoisomerase 2-binding protein 1; BRCT domain	7e-04

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372

 Score = 92.9 bits (230), Expect = 7e-22
 Identities = 37/147 (25%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 8   RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASEL------FLV 61
           ++K+L L++DLDQT+ HA     +                D   F +          + +
Sbjct: 15  QEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYI 74

Query: 62  KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGK 121
           K R  + +FL+K S++Y++++ T   ++YA  +AK+++P  +     R+++R+D     +
Sbjct: 75  KFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKL-FQDRVLSRDDSGSLAQ 133

Query: 122 KS-GDLVLRQEWGVVIVDDTEKVWKDH 147
           KS   L       VV++DD   VW  +
Sbjct: 134 KSLRRLFPCDTSMVVVIDDRGDVWDWN 160

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372

 Score = 71.0 bits (173), Expect = 3e-14
 Identities = 31/185 (16%), Positives = 71/185 (38%), Gaps = 20/185 (10%)

Query: 113 REDFKEKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEH------LMLLNGALVNVLRVMK 166
           RE  +E+ K+    +  Q+    +      + +D  +       L   +  L  + +V+K
Sbjct: 187 REALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLK 246

Query: 167 TVHGLFFE----------NPVCGDVRCFLGKIQRQILVRCTLFFSRDVD-DKEFEFPLLK 215
            +H +++E          N    +V   + K+++++L  C L FS  +    +     + 
Sbjct: 247 DIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIA 306

Query: 216 WRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKF-LVHPQWIYAAYYLWSRQ 274
             A   GA     +++    +++   ++  +  + A       +V   W+  +   W R 
Sbjct: 307 KWAMSFGAEVVLDFSVPPTHLIAA--KIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRL 364

Query: 275 VEKDY 279
            E DY
Sbjct: 365 PESDY 369

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442

 Score = 88.9 bits (219), Expect = 3e-20
 Identities = 36/154 (23%), Positives = 73/154 (47%), Gaps = 8/154 (5%)

Query: 2   NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASEL--- 58
           N + + ++K+L L++ LDQT+ HA     +                D   F +       
Sbjct: 17  NVKRLRQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGY 76

Query: 59  ---FLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED 115
              + +K R  + +FL+K S++Y++++ T   ++YA  +AK+++P  +     R+++R+D
Sbjct: 77  TSCYYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKL-FQDRVLSRDD 135

Query: 116 FKEKGKKSGDLVL-RQEWGVVIVDDTEKVWKDHK 148
                +KS   +       VV++DD   VW  + 
Sbjct: 136 SGSLAQKSLRRLFPCDTSMVVVIDDRGDVWDWNP 169

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442

 Score = 66.2 bits (160), Expect = 2e-12
 Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 14/147 (9%)

Query: 145 KDHKEHLMLLNGALVNVLRVMKTVHGLFFE----------NPVCGDVRCFLGKIQRQILV 194
                 L   +  L  + +V+K +H +++E          N    +V   + K+++++L 
Sbjct: 295 TPSHTLLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLK 354

Query: 195 RCTLFFSRDV-DDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQ 253
            C L FS  +    +     +   A   GA     +++    +++  +++  +  + A  
Sbjct: 355 GCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIA--AKIRTEKVKKAVS 412

Query: 254 HNKF-LVHPQWIYAAYYLWSRQVEKDY 279
                +V   W+  +   W R  E DY
Sbjct: 413 MGNIKVVKLNWLTESLSQWKRLPESDY 439

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} Length = 204

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 43/194 (22%)

Query: 8   RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYI 67
            Q+ L LV+ L+  L H+          +K+                    +    R   
Sbjct: 31  YQRPLTLVITLEDFLVHS-------EWSQKHG-------------------WRTAKRPGA 64

Query: 68  RKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED-FKEKGKKSGDL 126
             FL   S+ Y+I L ++    Y+  +A+ L+P   + +S  L  +E    + G    DL
Sbjct: 65  DYFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAF-VSYNL-FKEHCVYKDGVHIKDL 122

Query: 127 VLRQEW--GVVIVDDTEKVWKDHKEHLMLLNG-------ALVNVLRVMKTVHGLFFENPV 177
                    V+I+D     +K   E+ + +          LV ++  ++ +     +   
Sbjct: 123 SKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEADDKLVRLIPFLEYLATQQTK--- 179

Query: 178 CGDVRCFLGKIQRQ 191
             DVR  L   + +
Sbjct: 180 --DVRPILNSFEDK 191

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A Length = 181

 Score = 53.1 bits (128), Expect = 8e-09
 Identities = 35/192 (18%), Positives = 74/192 (38%), Gaps = 32/192 (16%)

Query: 7   YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSY 66
               K+ +V++LD+TL H+     + + D    ++  G                V  R +
Sbjct: 11  QDSDKICVVINLDETLVHS-SFKPVNNADFIIPVEIDGVVHQ----------VYVLKRPH 59

Query: 67  IRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEK-GKKSGD 125
           + +FL++  ++++  L T  +  YA  +A LL+           + RE      G    D
Sbjct: 60  VDEFLQRMGELFECVLFTASLAKYADPVADLLDKW---GAFRARLFRESCVFHRGNYVKD 116

Query: 126 L-VLRQEWG-VVIVDDTEKVWKDHKEHLMLLNG--------ALVNVLRVMKTVHGLFFEN 175
           L  L ++   V+I+D++   +  H ++ + +           L ++L   + +       
Sbjct: 117 LSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSR----- 171

Query: 176 PVCGDVRCFLGK 187
               DV   L +
Sbjct: 172 --VDDVYSVLRQ 181

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} Length = 195

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 35/188 (18%), Positives = 74/188 (39%), Gaps = 32/188 (17%)

Query: 9   QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIR 68
             K  +V+DLD+TL H+     +++ D    ++  G+               V  R ++ 
Sbjct: 26  YGKKCVVIDLDETLVHS-SFKPISNADFIVPVEIDGTIHQ----------VYVLKRPHVD 74

Query: 69  KFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED-FKEKGKKSGDLV 127
           +FL++  ++++  L T  +  YA  +A LL+      +    + RE     +G    DL 
Sbjct: 75  EFLQRMGQLFECVLFTASLAKYADPVADLLDRW---GVFRARLFRESCVFHRGNYVKDLS 131

Query: 128 L--RQEWGVVIVDDTEKVWKDHKEHLMLLNG--------ALVNVLRVMKTVHGLFFENPV 177
              R+   V+IVD++   +  H E+ + +           L++++   + +         
Sbjct: 132 RLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDMTDTELLDLIPFFEGLSR------- 184

Query: 178 CGDVRCFL 185
             D     
Sbjct: 185 EDDEGHHH 192

>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 187 KIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIK 246
           +   +IL    +  S    +       L+ +A ELGA     +      ++   +     
Sbjct: 17  EELGKILQGVVVVLS-GFQNPFRSE--LRDKALELGAKYRPDWTRDSTHLIC--AFANTP 71

Query: 247 GHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDY 279
            +         +V  +W+   + +  R   + Y
Sbjct: 72  KYSQVLGLGGRIVRKEWVLDCHRMRRRLPSQRY 104

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A* Length = 298

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 12/148 (8%)

Query: 134 VVIVD--DTEKVWKDHKEHLMLLNGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQRQ 191
            +I     ++K          +L          +KT+     E  +       +   +  
Sbjct: 145 HLIAGEVGSKKYLVAANLKKPILL------PSWIKTLWEKSQEKKITRYTDINMEDFKCP 198

Query: 192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLA 251
           I + C +  +        +   ++    + G        ++    + V    G K +  A
Sbjct: 199 IFLGCIICVTGLCGL---DRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQK-YECA 254

Query: 252 EQHNKFLVHPQWIYAAYYLWSRQVEKDY 279
           ++ N   V  QW + +      Q E  Y
Sbjct: 255 KRWNVHCVTTQWFFDSIEKGFCQDESIY 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	100.0
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	100.0
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	100.0
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	100.0
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	100.0
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.97
3l3e_A	107	DNA topoisomerase 2-binding protein 1; BRCT domain	99.85
3l46_A	112	Protein ECT2; alternative splicing, guanine-nucleo	99.82
2cou_A	109	ECT2 protein; BRCT domain, RHO GTPase, structural	99.82
3pa6_A	107	Microcephalin; BRCT domain, cell cycle; HET: MSE;	99.81
2d8m_A	129	DNA-repair protein XRCC1; parallel beta-sheet, DNA	99.79
4id3_A	92	DNA repair protein REV1; BRCT domain, protein bind	99.76
2ebw_A	97	DNA repair protein REV1; A/B/A 3 layers, parallel	99.71
1wf6_A	132	Similar to S.pombe -RAD4+/CUT5+product (A40727); B	99.7
3olc_X	298	DNA topoisomerase 2-binding protein 1; BRCT domain	99.68
3pc6_A	104	DNA repair protein XRCC1; BRCT domain, protein:pro	99.68
1l0b_A	229	BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu	99.6
2nte_A	210	BARD-1, BRCA1-associated ring domain protein 1; BR	99.57
1t15_A	214	Breast cancer type 1 susceptibility protein; prote	99.57
3sqd_A	219	PAX-interacting protein 1; tandem BRCT domains, ce	99.56
2etx_A	209	Mediator of DNA damage checkpoint protein 1; tande	99.51
3olc_X	298	DNA topoisomerase 2-binding protein 1; BRCT domain	99.48
3al2_A	235	DNA topoisomerase 2-binding protein 1; BRCT domain	99.45
2jw5_A	106	DNA polymerase lambda; BRCT domain, family X polym	99.45
3u3z_A	199	Microcephalin; DNA repair, cell cycle regulation,	99.4
3l41_A	220	BRCT-containing protein 1; BRC1, BRCT domain, tand	99.34
3ii6_X	263	DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter	99.3
1kzy_C	259	Tumor suppressor P53-binding protein 1; tandem-BRC	99.29
1l7b_A	92	DNA ligase; BRCT, autostructure, structural genomi	99.29
2vxb_A	241	DNA repair protein RHP9; BRCT, nucleus, cell cycle	99.28
2ep8_A	100	Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r	99.27
3ii6_X	263	DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter	99.26
2coe_A	120	Deoxynucleotidyltransferase, terminal variant; BRC	99.24
2k6g_A	109	Replication factor C subunit 1; protein, BRCT, DNA	99.22
2ebu_A	112	Replication factor C subunit 1; A/B/A 3 layers, pa	99.19
1z56_C	264	DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA	99.17
3pc7_A	88	DNA ligase 3; DNA repair, BRCT domain, protein:pro	99.14
2cok_A	113	Poly [ADP-ribose] polymerase-1; BRCT domain, DNA r	99.1
2dun_A	133	POL MU, DNA polymerase MU; layers A/B/A, parallel	98.97
1l0b_A	229	BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu	98.88
1z56_C	264	DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA	98.86
1t15_A	214	Breast cancer type 1 susceptibility protein; prote	98.85
3u3z_A	199	Microcephalin; DNA repair, cell cycle regulation,	98.75
1kzy_C	259	Tumor suppressor P53-binding protein 1; tandem-BRC	98.73
2etx_A	209	Mediator of DNA damage checkpoint protein 1; tande	98.55
2nte_A	210	BARD-1, BRCA1-associated ring domain protein 1; BR	98.5
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	98.19
1dgs_A	667	DNA ligase; AMP complex, NAD+-dependent; HET: DNA	98.15
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	98.12
2owo_A	671	DNA ligase; protein-DNA complex, ligase-DNA comple	98.11
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	98.09
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	98.05
2vxb_A	241	DNA repair protein RHP9; BRCT, nucleus, cell cycle	98.02
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	97.99
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	97.98
3sqd_A	219	PAX-interacting protein 1; tandem BRCT domains, ce	97.97
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	97.96
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	97.93
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	97.87
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	97.83
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	97.81
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	97.76
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	97.75
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	97.74
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	97.72
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	97.67
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	97.65
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.64
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	97.64
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	97.63
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	97.63
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	97.58
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	97.56
3al2_A	235	DNA topoisomerase 2-binding protein 1; BRCT domain	97.47
3huf_A	325	DNA repair and telomere maintenance protein NBS1;	97.46
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	97.42
3t7k_A	256	RTT107, regulator of TY1 transposition protein 107	97.35
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	97.35
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	97.34
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	97.34
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	97.33
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	97.27
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	97.23
2o2x_A	218	Hypothetical protein; structural genomics, joint c	97.21
4gns_A	290	Chitin biosynthesis protein CHS5; FN3, BRCT, tetra	97.08
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	97.06
3mmz_A	176	Putative HAD family hydrolase; structural genomics	96.95
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	96.88
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	96.84
3oq0_A	151	DBF4, protein DNA52; DDK, BRCT, RAD53, replication	96.74
2l42_A	106	DNA-binding protein RAP1; BRCT domain, protein bin	96.73
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	96.71
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	96.67
3l41_A	220	BRCT-containing protein 1; BRC1, BRCT domain, tand	96.63
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	96.63
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	96.58
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	96.52
3oq4_A	134	DBF4, protein DNA52; DDK, BRCT, RAD53, replication	96.52
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	96.42
3qbz_A	160	DDK kinase regulatory subunit DBF4; FHA domain,RAD	96.35
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	96.3
3mn1_A	189	Probable YRBI family phosphatase; structural genom	96.23
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	96.19
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	96.19
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	96.14
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	96.09
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	96.08
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	96.04
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	96.02
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	95.98
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	95.98
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	95.86
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	95.82
2hsz_A	243	Novel predicted phosphatase; structural genomics,	95.76
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	95.72
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	95.68
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	95.66
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	95.52
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	95.48
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	95.39
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	95.28
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	95.21
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	95.18
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	95.07
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	95.04
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	94.95
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	94.85
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	94.82
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	94.6
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	94.52
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	94.42
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	94.35
2zg6_A	220	Putative uncharacterized protein ST2620, probable	94.16
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	94.1
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	94.09
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	93.99
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	93.94
1te2_A	226	Putative phosphatase; structural genomics, phospha	93.72
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	93.68
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	93.67
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	93.64
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	93.64
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	93.6
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	93.5
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	93.48
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	93.45
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	93.37
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	93.36
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	93.32
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	93.2
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	92.94
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	92.79
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	92.48
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	92.38
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	92.37
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	92.06
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	91.97
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	91.96
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	91.76
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	91.56
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	91.51
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	91.48
3dao_A	283	Putative phosphatse; structural genomics, joint ce	91.41
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	91.36
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	91.27
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	91.23
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	91.12
3fvv_A	232	Uncharacterized protein; unknown function, structu	91.03
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	90.94
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	90.65
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	90.47
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	90.2
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	90.11
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	90.01
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	90.0
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	89.94
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	89.93
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	89.32
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	89.11
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	88.8
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	88.71
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	88.66
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	88.21
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	88.18
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	88.14
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	87.72
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	87.34
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	87.31
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	87.16
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	87.02
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	87.04
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	86.56
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	86.15
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	85.57
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	84.93
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	84.52
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	82.15
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	82.04
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	81.62
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	81.25
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	81.18
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	80.87
3t7k_A	256	RTT107, regulator of TY1 transposition protein 107	80.65
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	80.07

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.3e-66  Score=487.40  Aligned_cols=275  Identities=22%  Similarity=0.362  Sum_probs=241.1

Q ss_pred             cccchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhh-hcCCCCCCcceeec------ceeEEEEecccHHHHHHHH
Q 041003            2 NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMK-QRGSSSDGDLFKMA------SELFLVKVRSYIRKFLKKA   74 (282)
Q Consensus         2 ~~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~------~~~~~v~~RP~l~~FL~~~   74 (282)
                      +++||+.++|++||||||||||||+..|..+ ++...+.+ +.++..|+..|.++      +..+||++|||+++||+++
T Consensus        17 ~~~rll~~~Kl~LVLDLDeTLiHs~~~~~~~-~~~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~~V~~RPgl~eFL~~l   95 (442)
T 3ef1_A           17 NVKRLRQEKRLSLIVXLDQTIIHATVDPTVG-EWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKI   95 (442)
T ss_dssp             HHHHHHHTTCEEEEECCBTTTEEEECCTHHH-HHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHH
T ss_pred             HHHHHHhcCCeEEEEeeccceeccccccccc-hhccCCCCcchhhhccccceeeeeccCCceeEEEEEeCCCHHHHHHHH
Confidence            4679999999999999999999999876443 22211111 22345566667763      4689999999999999999


Q ss_pred             hcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccc-cccCCceEEEcCChhhhhhCccCeee
Q 041003           75 SKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLV-LRQEWGVVIVDDTEKVWKDHKEHLML  153 (282)
Q Consensus        75 ~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l-~~~~~~vvivDd~~~~~~~~~~N~i~  153 (282)
                      +++|||+|||+|.+.||++|++.|||.+.+| ++|++||++|+..++|||++| ++++++||||||++.+|..|| |+|+
T Consensus        96 s~~yEivIfTas~~~YA~~Vl~~LDp~~~~f-~~Rl~sRd~cg~~~~KdL~~ll~rdl~~vvIIDd~p~~~~~~p-N~I~  173 (442)
T 3ef1_A           96 SELYELHIYTMGTKAYAKEVAKIIDPTGKLF-QDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIK  173 (442)
T ss_dssp             TTTEEEEEECSSCHHHHHHHHHHHCTTSTTT-TTCEECTTTSSCSSCCCGGGTCSSCCTTEEEEESCSGGGTTCT-TEEE
T ss_pred             hCCcEEEEEcCCCHHHHHHHHHHhccCCccc-cceEEEecCCCCceeeehHHhcCCCcceEEEEECCHHHhCCCC-CEEE
Confidence            9999999999999999999999999999999 999999999987889999977 789999999999999999886 9999


Q ss_pred             H-------------H------H----------------------------------------------------------
Q 041003          154 L-------------N------G----------------------------------------------------------  156 (282)
Q Consensus       154 i-------------D------~----------------------------------------------------------  156 (282)
                      |             |      .                                                          
T Consensus       174 I~~~~fF~~~gD~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (442)
T 3ef1_A          174 VVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDSSNSSYAQDSSTIPEKTLLKDTF  253 (442)
T ss_dssp             CCCCCCSTTCCCSCC-----------------------------------------------------------------
T ss_pred             cCCccccCCCCcccccccccccccccccccccccccccccccccccccccccCcccccccccccccccccchhhhhcccc
Confidence            9             1      1                                                          


Q ss_pred             -----------------------------------------------------HHHHHHHHHhHhhcccccCCC------
Q 041003          157 -----------------------------------------------------ALVNVLRVMKTVHGLFFENPV------  177 (282)
Q Consensus       157 -----------------------------------------------------~L~~l~~~L~~i~~~ff~~~~------  177 (282)
                                                                           +|..+...|.+||+.||..+.      
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~q~~~rpl~~~q~~l~~~~~~~~~~~~~l~d~D~~L~~l~~~L~~iH~~fy~~~d~~~~~~  333 (442)
T 3ef1_A          254 LQNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVYYEEENDISSRS  333 (442)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTSCCSCHHHHCSCCCCCCHHHHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred             CccchhhHHHHHHhhhhhhhhhccCchhhHHHHhhhhhhccccccccccCCcHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence                                                                 134478899999999998762      


Q ss_pred             ----CCcccccccchhheeecceeEEeeccCCCCc-cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHH
Q 041003          178 ----CGDVRCFLGKIQRQILVRCTLFFSRDVDDKE-FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAE  252 (282)
Q Consensus       178 ----~~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~-~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~  252 (282)
                          .+||+.|+.++|.++|.||+|||||++|.+. +++..++++++.+||+|+.+++++||||||+  +.+|.|+.+|.
T Consensus       334 ~~~~~~Dv~~il~~~k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~--~~~t~K~~~A~  411 (442)
T 3ef1_A          334 GNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAA--KIRTEKVKKAV  411 (442)
T ss_dssp             SSSCCCCHHHHHHHHHHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEEC--SCCCHHHHHHH
T ss_pred             ccCCCCcHHHHHHHHhhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeC--CCCCHHHHHHH
Confidence                3799999999999999999999999998864 5678999999999999999999999999999  78999999999


Q ss_pred             HC-CCceecHHHHHHHHHhCCcCCCCCCCC
Q 041003          253 QH-NKFLVHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       253 ~~-gi~IV~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      ++ ||+||+++||++|+..|+++||++|..
T Consensus       412 ~~g~IkIVs~~WL~dcl~~~krldE~~YlL  441 (442)
T 3ef1_A          412 SMGNIKVVKLNWLTESLSQWKRLPESDYLL  441 (442)
T ss_dssp             HHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred             hcCCCEEEeHHHHHHHHHcCCcCChhcccc
Confidence            98 599999999999999999999999975

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.7e-65  Score=476.80  Aligned_cols=275  Identities=23%  Similarity=0.369  Sum_probs=241.4

Q ss_pred             cccchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhh-hcCCCCCCcceeec------ceeEEEEecccHHHHHHHH
Q 041003            2 NSEMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMK-QRGSSSDGDLFKMA------SELFLVKVRSYIRKFLKKA   74 (282)
Q Consensus         2 ~~~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~------~~~~~v~~RP~l~~FL~~~   74 (282)
                      +++||+.++|++||||||||||||+..|..+ ++.....+ +.+...|+..|.+.      +..+||++|||+++||+.+
T Consensus         9 ~~~rl~~~~k~~LVlDLD~TLvhS~~~~~~~-~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l   87 (372)
T 3ef0_A            9 NVKRLRQEKRLSLIVDLDQTIIHATVDPTVG-EWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKI   87 (372)
T ss_dssp             HHHHHHHHTCEEEEECCBTTTEEEECCTHHH-HHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEcCCCCcccccCcCccc-hhhccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHH
Confidence            5789999999999999999999998776432 22211110 11223445456553      4689999999999999999


Q ss_pred             hcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccc-cccCCceEEEcCChhhhhhCccCeee
Q 041003           75 SKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLV-LRQEWGVVIVDDTEKVWKDHKEHLML  153 (282)
Q Consensus        75 ~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l-~~~~~~vvivDd~~~~~~~~~~N~i~  153 (282)
                      +++|||+|||++.+.||++|++.|||.+.+| ++|+++|++|+..++|||++| +++++++|||||++.+|..|| |+|+
T Consensus        88 ~~~yeivI~Tas~~~yA~~vl~~LDp~~~~f-~~ri~sr~~~g~~~~KdL~~L~~~dl~~viiiDd~~~~~~~~p-N~I~  165 (372)
T 3ef0_A           88 SELYELHIYTMGTKAYAKEVAKIIDPTGKLF-QDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIK  165 (372)
T ss_dssp             HTTEEEEEECSSCHHHHHHHHHHHCTTSCSS-SSCEECTTTSSCSSCCCGGGTCSSCCTTEEEEESCSGGGTTCT-TEEE
T ss_pred             hcCcEEEEEeCCcHHHHHHHHHHhccCCcee-eeEEEEecCCCCcceecHHHhcCCCCceEEEEeCCHHHcCCCC-cEee
Confidence            9999999999999999999999999999999 889999999988889999987 789999999999999999886 9999


Q ss_pred             H--------------------------------------------------------------------HHHHHHHHHHH
Q 041003          154 L--------------------------------------------------------------------NGALVNVLRVM  165 (282)
Q Consensus       154 i--------------------------------------------------------------------D~~L~~l~~~L  165 (282)
                      |                                                                    |++|..+..+|
T Consensus       166 i~~~~~f~~~~d~n~~~lp~~~~~~~~~~~~~~~~~~~q~~~~p~~~~q~~l~~~e~~~~~~~~~~~d~D~~L~~~~~~L  245 (372)
T 3ef0_A          166 VVPYEFFVGIGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVL  245 (372)
T ss_dssp             CCCCCCSTTCCCTTC--------CCGGGGHHHHHHHHHHHHHCHHHHHHHHHHHSCCSCSGGGCSCCCCCCHHHHHHHHH
T ss_pred             eCCccccCCcCccccccccccchhHHHhhhhhhhhhhhhhcccchhHHHHhhhccccccchhhccccCChHHHHHHHHHH
Confidence            9                                                                    12578899999


Q ss_pred             hHhhcccccCC----------CCCcccccccchhheeecceeEEeeccCCCCc-cchhHHHHHHHHhCCeEecccCCCcc
Q 041003          166 KTVHGLFFENP----------VCGDVRCFLGKIQRQILVRCTLFFSRDVDDKE-FEFPLLKWRAGELGAACTDVYNLSVA  234 (282)
Q Consensus       166 ~~i~~~ff~~~----------~~~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~-~~~~~l~~~~~~~Ga~v~~~~~~~vT  234 (282)
                      ++||+.||+++          ..+||+.++.++|+++|+||+|+|||.+|... +++..++++++.+||+|+.+++++||
T Consensus       246 ~~iH~~Ff~~~~~~~~~~~~~~~~dv~~ii~~lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vT  325 (372)
T 3ef0_A          246 KDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPT  325 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCS
T ss_pred             HHHHHHHHHHHhhhcccccccccccHHHHHHHHHhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCce
Confidence            99999999874          24899999999999999999999999998754 56789999999999999999999999


Q ss_pred             EEEEcCCCCCcHHHHHHHHC-CCceecHHHHHHHHHhCCcCCCCCCCC
Q 041003          235 QVVSVSSRLGIKGHRLAEQH-NKFLVHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       235 HlV~~~~~~~t~K~~~A~~~-gi~IV~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      ||||+  +.+|.|+.+|.++ ||+||+++||++|++.|+++||++|..
T Consensus       326 HLVa~--~~~t~K~~~A~~~~~I~IV~~~Wl~~c~~~~~~vdE~~Y~l  371 (372)
T 3ef0_A          326 HLIAA--KIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYLL  371 (372)
T ss_dssp             EEEEC--SCCCHHHHHHHHSSSCCEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred             EEEEc--CCCchHHHHHHhcCCCEEEcHHHHHHHHHhCCcCChhhcee
Confidence            99999  7899999999998 799999999999999999999999974

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=100.00  E-value=4.5e-39  Score=276.15  Aligned_cols=150  Identities=22%  Similarity=0.254  Sum_probs=135.2

Q ss_pred             cCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCc
Q 041003            8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRI   87 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~   87 (282)
                      .++|++|||||||||||+++.+.                          .++++++|||+++||+.++++|||+|||+|.
T Consensus        31 ~~~~~tLVLDLDeTLvh~~~~~~--------------------------~~~~v~~RPgl~eFL~~l~~~yeivI~Tas~   84 (204)
T 3qle_A           31 YQRPLTLVITLEDFLVHSEWSQK--------------------------HGWRTAKRPGADYFLGYLSQYYEIVLFSSNY   84 (204)
T ss_dssp             -CCSEEEEEECBTTTEEEEEETT--------------------------TEEEEEECTTHHHHHHHHTTTEEEEEECSSC
T ss_pred             cCCCeEEEEeccccEEeeecccc--------------------------CceeEEeCCCHHHHHHHHHhCCEEEEEcCCc
Confidence            47899999999999999987431                          2478999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCcccccccEEEccCCC---CCceeccccccccCCceEEEcCChhhhhhCccCeeeH-------HHH
Q 041003           88 RSYAMMMAKLLNPKCEYHISSRLITREDFK---EKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL-------NGA  157 (282)
Q Consensus        88 ~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~---~~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i-------D~~  157 (282)
                      +.||++|++.|||.+.+| ..| ++|++|.   +.++|||++++++++++|||||++.+|..||+|+|+|       |++
T Consensus        85 ~~ya~~vl~~LDp~~~~f-~~r-l~R~~c~~~~g~y~KdL~~Lgrdl~~vIiIDDsp~~~~~~p~N~I~I~~~~~~~D~e  162 (204)
T 3qle_A           85 MMYSDKIAEKLDPIHAFV-SYN-LFKEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWNGEADDK  162 (204)
T ss_dssp             HHHHHHHHHHTSTTCSSE-EEE-ECGGGSEEETTEEECCGGGSCSCGGGEEEEESCTTTTTTCGGGEEECCCCCSSCCCH
T ss_pred             HHHHHHHHHHhCCCCCeE-EEE-EEecceeEECCeeeecHHHhCCChHHEEEEECCHHHHhhCccCceEeeeECCCCChh
Confidence            999999999999998888 554 7899996   3679999999999999999999999999999999999       789


Q ss_pred             HHHHHHHHhHhhcccccCCCCCcccccccchhh
Q 041003          158 LVNVLRVMKTVHGLFFENPVCGDVRCFLGKIQR  190 (282)
Q Consensus       158 L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~r~  190 (282)
                      |..|+|+|+.|+..     ..+|||++|++++.
T Consensus       163 L~~L~~~L~~L~~~-----~~~DVR~~L~~~~~  190 (204)
T 3qle_A          163 LVRLIPFLEYLATQ-----QTKDVRPILNSFED  190 (204)
T ss_dssp             HHHHHHHHHHHHHT-----CCSCSHHHHTTSSC
T ss_pred             HHHHHHHHHHHhhc-----ChHHHHHHHHHhcC
Confidence            99999999999842     47999999998864

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=100.00  E-value=3.1e-35  Score=248.55  Aligned_cols=158  Identities=20%  Similarity=0.230  Sum_probs=135.4

Q ss_pred             hcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecc--eeEEEEecccHHHHHHHHhcCceEEEEc
Q 041003            7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMAS--ELFLVKVRSYIRKFLKKASKMYDIYLCT   84 (282)
Q Consensus         7 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~v~~RP~l~~FL~~~~~~yei~i~T   84 (282)
                      ..++|++||||||||||||+..+..+.  +           ....+.+.+  .++++++|||+++||+++++.||++|||
T Consensus        11 ~~~~k~~LVLDLD~TLvhs~~~~~~~~--d-----------~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~~~i~I~T   77 (181)
T 2ght_A           11 QDSDKICVVINLDETLVHSSFKPVNNA--D-----------FIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFT   77 (181)
T ss_dssp             GGTTSCEEEECCBTTTEEEESSCCSSC--S-----------EEEEEEETTEEEEEEEEECTTHHHHHHHHHHHSEEEEEC
T ss_pred             ccCCCeEEEECCCCCeECCcccCCCCc--c-----------ceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhCCCEEEEc
Confidence            457899999999999999987653220  0           001122233  4688999999999999999999999999


Q ss_pred             CCcHHHHHHHHhhhcCCCcccccccEEEccCCC---CCceeccccccccCCceEEEcCChhhhhhCccCeeeH-------
Q 041003           85 TRIRSYAMMMAKLLNPKCEYHISSRLITREDFK---EKGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL-------  154 (282)
Q Consensus        85 ~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~---~~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i-------  154 (282)
                      ++.+.||+++++.|||.+ +|  ..+++|++|.   ..+.|+|++++++++++|+|||++..|..+++|+|+|       
T Consensus        78 ~~~~~~a~~vl~~ld~~~-~f--~~~~~rd~~~~~k~~~~k~L~~Lg~~~~~~vivdDs~~~~~~~~~ngi~i~~~~~~~  154 (181)
T 2ght_A           78 ASLAKYADPVADLLDKWG-AF--RARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNM  154 (181)
T ss_dssp             SSCHHHHHHHHHHHCTTC-CE--EEEECGGGSEEETTEEECCGGGTCSCGGGEEEECSCGGGGTTCTTSBCCCCCCSSCT
T ss_pred             CCCHHHHHHHHHHHCCCC-cE--EEEEeccCceecCCcEeccHHHhCCCcceEEEEeCCHHHhccCcCCEeEeccccCCC
Confidence            999999999999999998 68  4457899995   3689999999999999999999999999999999999       


Q ss_pred             -HHHHHHHHHHHhHhhcccccCCCCCcccccccc
Q 041003          155 -NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGK  187 (282)
Q Consensus       155 -D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~  187 (282)
                       |++|..++|+|+.|+       ..+|||++|++
T Consensus       155 ~D~eL~~l~~~L~~l~-------~~~DVr~~l~~  181 (181)
T 2ght_A          155 SDTELHDLLPFFEQLS-------RVDDVYSVLRQ  181 (181)
T ss_dssp             TCCHHHHHHHHHHHHT-------TCSCTHHHHCC
T ss_pred             ChHHHHHHHHHHHHhC-------cCccHHHHhhC
Confidence             899999999999999       67999999874

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=100.00  E-value=6.8e-34  Score=259.54  Aligned_cols=146  Identities=18%  Similarity=0.209  Sum_probs=128.1

Q ss_pred             cCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCc
Q 041003            8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRI   87 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~   87 (282)
                      .++|++|||||||||||+.+..                           .++++++|||+++||+.++++|||+|||++.
T Consensus       137 ~~~k~tLVLDLDeTLvh~~~~~---------------------------~~~~~~~RP~l~eFL~~l~~~yeivIfTas~  189 (320)
T 3shq_A          137 REGKKLLVLDIDYTLFDHRSPA---------------------------ETGTELMRPYLHEFLTSAYEDYDIVIWSATS  189 (320)
T ss_dssp             CTTCEEEEECCBTTTBCSSSCC---------------------------SSHHHHBCTTHHHHHHHHHHHEEEEEECSSC
T ss_pred             cCCCcEEEEeccccEEcccccC---------------------------CCcceEeCCCHHHHHHHHHhCCEEEEEcCCc
Confidence            4679999999999999997532                           1235789999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCcc-cccccEEEccCCC---------C-Cceeccccc-----cccCCceEEEcCChhhhhhCccCe
Q 041003           88 RSYAMMMAKLLNPKCEY-HISSRLITREDFK---------E-KGKKSGDLV-----LRQEWGVVIVDDTEKVWKDHKEHL  151 (282)
Q Consensus        88 ~~Ya~~v~~~ldp~~~~-f~~~rv~~r~~~~---------~-~~~KdL~~l-----~~~~~~vvivDd~~~~~~~~~~N~  151 (282)
                      +.||++|++.|||.+.+ | +.| ++|++|.         + .++|||+++     +++++++|||||++.+|..||+|+
T Consensus       190 ~~ya~~vld~Ld~~~~~~~-~~~-~~r~~~~~~~~~~~~~g~~~vKdLs~Lw~~~p~rdl~~tIiIDdsp~~~~~~p~Ng  267 (320)
T 3shq_A          190 MRWIEEKMRLLGVASNDNY-KVM-FYLDSTAMISVHVPERGVVDVKPLGVIWALYKQYNSSNTIMFDDIRRNFLMNPKSG  267 (320)
T ss_dssp             HHHHHHHHHHTTCTTCSSC-CCC-EEECGGGCEEEEETTTEEEEECCHHHHHHHCTTCCGGGEEEEESCGGGGTTSGGGE
T ss_pred             HHHHHHHHHHhCCCCCcce-eEE-EEEcCCccccccccCCCCEEEEEhHHhhcccCCCChhHEEEEeCChHHhccCcCce
Confidence            99999999999999875 5 555 5588874         2 479999999     889999999999999999999999


Q ss_pred             eeH------------HHHHHHHHHHHhHhhcccccCCCCCcccccccch
Q 041003          152 MLL------------NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGKI  188 (282)
Q Consensus       152 i~i------------D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~~  188 (282)
                      |+|            |++|..|++||+.|+.      ..+|||+++++.
T Consensus       268 I~I~~~~~~~~~~~~D~eL~~L~~~L~~L~~------~~~DVr~~~~~~  310 (320)
T 3shq_A          268 LKIRPFRQAHLNRGTDTELLKLSDYLRKIAH------HCPDFNSLNHRK  310 (320)
T ss_dssp             EECCCCCCHHHHTTTCCHHHHHHHHHHHHHH------HCSCGGGCCGGG
T ss_pred             EEeCeEcCCCCCCCccHHHHHHHHHHHHHhc------cCcchhHHHHHH
Confidence            999            6799999999999994      369999999763

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.97  E-value=7.4e-32  Score=230.37  Aligned_cols=148  Identities=21%  Similarity=0.223  Sum_probs=126.5

Q ss_pred             hcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecc--eeEEEEecccHHHHHHHHhcCceEEEEc
Q 041003            7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMAS--ELFLVKVRSYIRKFLKKASKMYDIYLCT   84 (282)
Q Consensus         7 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~~v~~RP~l~~FL~~~~~~yei~i~T   84 (282)
                      ...+|++||||||||||||++.+....  +           ......+.+  .++++++|||+++||+++++.|+++|||
T Consensus        24 ~~~~k~~LVLDLD~TLvhs~~~~~~~~--d-----------~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~~~i~I~T   90 (195)
T 2hhl_A           24 LDYGKKCVVIDLDETLVHSSFKPISNA--D-----------FIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFT   90 (195)
T ss_dssp             GGTTCCEEEECCBTTTEEEESSCCTTC--S-----------EEEEEEETTEEEEEEEEECTTHHHHHHHHHHHSEEEEEC
T ss_pred             ccCCCeEEEEccccceEcccccCCCCc--c-----------ceeeeecCCceeeEEEEeCcCHHHHHHHHHcCCeEEEEc
Confidence            357899999999999999987643220  0           001112223  4688999999999999999999999999


Q ss_pred             CCcHHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH-------
Q 041003           85 TRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL-------  154 (282)
Q Consensus        85 ~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i-------  154 (282)
                      ++.+.||+++++.|||.+ +|  ..+++|++|..   .+.|+|++++++++++|+|||++..|..+++|+|+|       
T Consensus        91 ss~~~~a~~vl~~ld~~~-~f--~~~l~rd~~~~~k~~~lK~L~~Lg~~~~~~vivDDs~~~~~~~~~ngi~i~~~~~~~  167 (195)
T 2hhl_A           91 ASLAKYADPVADLLDRWG-VF--RARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWFDDM  167 (195)
T ss_dssp             SSCHHHHHHHHHHHCCSS-CE--EEEECGGGCEEETTEEECCGGGSSSCGGGEEEEESCGGGGTTCGGGEEECCCCSSCT
T ss_pred             CCCHHHHHHHHHHhCCcc-cE--EEEEEcccceecCCceeeeHhHhCCChhHEEEEECCHHHhhhCccCccEEeeecCCC
Confidence            999999999999999997 68  45588999963   689999999999999999999999999999999999       


Q ss_pred             -HHHHHHHHHHHhHhhc
Q 041003          155 -NGALVNVLRVMKTVHG  170 (282)
Q Consensus       155 -D~~L~~l~~~L~~i~~  170 (282)
                       |++|..|+++|+.|+.
T Consensus       168 ~D~eL~~L~~~L~~l~~  184 (195)
T 2hhl_A          168 TDTELLDLIPFFEGLSR  184 (195)
T ss_dssp             TCCHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHh
Confidence             9999999999999984

>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}

Probab=99.82  E-value=1.5e-21  Score=151.64  Aligned_cols=96  Identities=16%  Similarity=0.106  Sum_probs=81.3

Q ss_pred             ccccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceec
Q 041003          181 VRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVH  260 (282)
Q Consensus       181 vr~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~  260 (282)
                      -|+-..++|..+|.||+|||+|+ +.  .++..++++++.+||+++..+++++||||+.  +..+.|+..|.++|++||+
T Consensus        10 ~~~~~~~~~~p~F~g~~Ic~sGf-~~--~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~--~~~~~K~~~A~~~~i~IVs   84 (112)
T 3l46_A           10 GRENLYFQGVPPFQDCILSFLGF-SD--EEKTNMEEMTEMQGGKYLPLGDERCTHLVVE--ENIVKDLPFEPSKKLYVVK   84 (112)
T ss_dssp             --------CCCTTTTCEECEESC-CH--HHHHHHHHHHHHTTCEECCTTCTTCSEEEEC--TTTBSSCSSCCCSSCEEEE
T ss_pred             ccccccccCCCccCCeEEEEeCC-CH--HHHHHHHHHHHHcCCEECcccCCCceEEEec--CCchhhHHHHHHCCeeEec
Confidence            35667788899999999999996 43  3588999999999999999999999999999  6777888889899999999


Q ss_pred             HHHHHHHHHhCCcCCCCCCCC
Q 041003          261 PQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       261 ~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      ++||++|++.+.++||+.|..
T Consensus        85 ~eWl~dsi~~g~~ldE~~Y~~  105 (112)
T 3l46_A           85 QEWFWGSIQMDARAGETMYLY  105 (112)
T ss_dssp             HHHHHHHHHHTSCCCGGGSBC
T ss_pred             HHHHHHHHHcCCccChhhcee
Confidence            999999999999999999975

>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.82  E-value=2.3e-21  Score=150.29  Aligned_cols=92  Identities=15%  Similarity=0.172  Sum_probs=83.3

Q ss_pred             ccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHH
Q 041003          185 LGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWI  264 (282)
Q Consensus       185 L~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL  264 (282)
                      ..+++..+|.||+|+|+|+.+   .++..++++++.+||+++..+++++||||+.  +..+.|+..|.++|++||+++||
T Consensus         5 ~~~~~~~~F~g~~i~~sg~~~---~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~--~~~~~K~~~a~~~~i~IV~~~Wl   79 (109)
T 2cou_A            5 SSGFKVPPFQDCILSFLGFSD---EEKHSMEEMTEMQGGSYLPVGDERCTHLIVE--ENTVKDLPFEPSKKLFVVKQEWF   79 (109)
T ss_dssp             CCSSCCCTTTTCBEEEESSCH---HHHHHHHHHHHHHTCBCCCTTCTTCSEEEEC--TTTCSSCSSCCCTTSEEECHHHH
T ss_pred             cccccCCcCCCeEEEecCCCH---HHHHHHHHHHHHcCCEEecccCCCccEEEEe--CCccHHHHHHHHCCCeEecHHHH
Confidence            345678899999999999633   3588999999999999999999999999999  67788899999999999999999


Q ss_pred             HHHHHhCCcCCCCCCCC
Q 041003          265 YAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       265 ~~c~~~~~r~~E~~y~~  281 (282)
                      ++|++.++++||++|.+
T Consensus        80 ~dsi~~g~~ldE~~Y~~   96 (109)
T 2cou_A           80 WGSIQMDARAGETMYLY   96 (109)
T ss_dssp             HHHHHTTSCCCGGGTBC
T ss_pred             HHHHHcCCcCChhccCC
Confidence            99999999999999975

>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*

Probab=99.81  E-value=4.4e-20  Score=142.36  Aligned_cols=93  Identities=13%  Similarity=0.058  Sum_probs=80.7

Q ss_pred             chhheeecceeEEeeccCCCCc-cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHH
Q 041003          187 KIQRQILVRCTLFFSRDVDDKE-FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIY  265 (282)
Q Consensus       187 ~~r~~vl~G~~i~fsg~~~~~~-~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~  265 (282)
                      +++..+|+||+++|.+....+. .....++.+++.+||+++.++++++||||+.  +.++.|++.|+++|++||+++||+
T Consensus         2 ~~~~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~--~~~~~~~~~A~~~~i~iV~~~Wv~   79 (107)
T 3pa6_A            2 HMAAPILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFK--DGYQSTWDKAQKRGVKLVSVLWVE   79 (107)
T ss_dssp             --CCCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEE--SCCHHHHHHHHHHTCEEECHHHHH
T ss_pred             CccccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEe--CCCChHHHHHhcCCCEEECHHHHH
Confidence            4567799999999987753332 2346789999999999999999999999999  667788999999999999999999


Q ss_pred             HHHHhCCcCCCCCCCC
Q 041003          266 AAYYLWSRQVEKDYFP  281 (282)
Q Consensus       266 ~c~~~~~r~~E~~y~~  281 (282)
                      +|+++|+++||++|++
T Consensus        80 ~C~~~~~~vdE~~Y~i   95 (107)
T 3pa6_A           80 KCRTAGAHIDESLFPA   95 (107)
T ss_dssp             HHHHHTSCCCGGGSBC
T ss_pred             HHHHhCccCChhcccC
Confidence            9999999999999975

>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.79  E-value=1.3e-19  Score=144.47  Aligned_cols=88  Identities=15%  Similarity=0.108  Sum_probs=81.6

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHH
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAY  268 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~  268 (282)
                      ...+|.||+|+|||..+   .++..++++++.+||+++.++++++||||+.  ...+.|+..|.++|++||+++||.+|+
T Consensus        19 ~~~~f~g~~i~itG~~~---~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~--~~~~~K~~~A~~~gi~IV~~~Wl~d~~   93 (129)
T 2d8m_A           19 LGKILQGVVVVLSGFQN---PFRSELRDKALELGAKYRPDWTRDSTHLICA--FANTPKYSQVLGLGGRIVRKEWVLDCH   93 (129)
T ss_dssp             HTTTSTTEEEEEESCCT---THHHHHHHHHHHTTEEEESSCCTTCCEEEES--SSSCHHHHHHHHHTCEEEETHHHHHHH
T ss_pred             ccccCCCeEEEEeCCCc---HHHHHHHHHHHHcCCEEeCCcCCCCeEEEec--CCCChHHHHHHHCCCcEecHHHHHHHH
Confidence            35689999999999874   3588999999999999999999999999999  778999999999999999999999999


Q ss_pred             HhCCcCCCCCCCC
Q 041003          269 YLWSRQVEKDYFP  281 (282)
Q Consensus       269 ~~~~r~~E~~y~~  281 (282)
                      ..++++||++|.+
T Consensus        94 ~~~~~l~e~~Y~l  106 (129)
T 2d8m_A           94 RMRRRLPSQRYLM  106 (129)
T ss_dssp             HTTSCCCGGGGBC
T ss_pred             HhCCcCChHhccc
Confidence            9999999999974

>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}

Probab=99.76  E-value=1.3e-18  Score=130.12  Aligned_cols=86  Identities=16%  Similarity=0.135  Sum_probs=73.1

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccC--CCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYN--LSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA  266 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~--~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~  266 (282)
                      ..++|+||+|+|+|...   +.+..++++++.+||++...++  +++||+|+.  +..+.|...  ..|++||+|+||.+
T Consensus         4 ~~~~f~g~~~~i~g~~~---~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~--~~~~~K~~~--~~~~~iV~~~Wi~d   76 (92)
T 4id3_A            4 SSKIFKNCVIYINGYTK---PGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVAS--NLPLKKRIE--FANYKVVSPDWIVD   76 (92)
T ss_dssp             --CTTTTCEEEECSCCS---SCHHHHHHHHHHTTCEEESSCCCTTTCCEEECS--CCCHHHHHH--TTTSCEECTHHHHH
T ss_pred             cccccCCEEEEEeCCCC---cCHHHHHHHHHHCCCEEEEEecCCCceEEEEec--CCCHHHHHH--cCCCCEEcccHHHH
Confidence            35789999999999532   2478899999999999999999  899999999  666666432  36899999999999


Q ss_pred             HHHhCCcCCCCCCCC
Q 041003          267 AYYLWSRQVEKDYFP  281 (282)
Q Consensus       267 c~~~~~r~~E~~y~~  281 (282)
                      |++.++++||++|..
T Consensus        77 ci~~~~~l~e~~Y~l   91 (92)
T 4id3_A           77 SVKEARLLPWQNYSL   91 (92)
T ss_dssp             HHHHTSCCCGGGGBC
T ss_pred             HHHcCCcCChhhccc
Confidence            999999999999974

>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}

Probab=99.71  E-value=1e-17  Score=126.71  Aligned_cols=86  Identities=12%  Similarity=0.107  Sum_probs=75.2

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccC-CCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHH
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYN-LSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAA  267 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~-~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c  267 (282)
                      ...+|+||+|+++|...   +.+..|++++..+||++...++ ..+||+|+.  +..+.|++.+.  +++||+|+||.+|
T Consensus         9 ~~~lF~g~~~~isg~~~---~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~--~~~~~k~~~~~--~~~iV~p~Wl~dc   81 (97)
T 2ebw_A            9 SSTIFSGVAIYVNGYTD---PSAEELRKLMMLHGGQYHVYYSRSKTTHIIAT--NLPNAKIKELK--GEKVIRPEWIVES   81 (97)
T ss_dssp             CCCTTTTCEEEECSSCS---SCHHHHHHHHHHTTCEECSSCCSSSCCEEECS--CCCTTHHHHTS--SSCCBCTHHHHHH
T ss_pred             CCCCCCCeEEEEeCCCc---ccHHHHHHHHHHcCCEEeeecCCCCCEEEEec--CCChHHHHHhc--CCCEeChHHHHHH
Confidence            35799999999999743   3478999999999999998887 689999999  67678887654  8999999999999


Q ss_pred             HHhCCcCCCCCCCC
Q 041003          268 YYLWSRQVEKDYFP  281 (282)
Q Consensus       268 ~~~~~r~~E~~y~~  281 (282)
                      +++++++||++|.+
T Consensus        82 i~~~~~l~~~~Y~l   95 (97)
T 2ebw_A           82 IKAGRLLSYIPYQL   95 (97)
T ss_dssp             HHHTSCCCSGGGBS
T ss_pred             HHcCCccCchHcEe
Confidence            99999999999975

>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5

Probab=99.70  E-value=4.1e-17  Score=130.48  Aligned_cols=97  Identities=12%  Similarity=0.145  Sum_probs=79.5

Q ss_pred             CcccccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHH---CC
Q 041003          179 GDVRCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQ---HN  255 (282)
Q Consensus       179 ~dvr~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~---~g  255 (282)
                      .++-..+.+.+..+|+||+|+|+|..+   ..+..++++++.+||++...+++.|||||+.  +. +.+...+.+   .+
T Consensus        27 ~~~d~~~~~~~~~lF~g~~i~i~G~~~---~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~--~~-~~~~~~~~~~~~~~  100 (132)
T 1wf6_A           27 ENLDVSAFQAPEDLLDGCRIYLCGFSG---RKLDKLRRLINSGGGVRFNQLNEDVTHVIVG--DY-DDELKQFWNKSAHR  100 (132)
T ss_dssp             TTCCGGGCCCCTTTTTTCEEEEESCCS---HHHHHHHHHHHHTTCEEESSCCSSCCEEEES--SC-CSHHHHHHHHSCCC
T ss_pred             hhcCcccccccccccCCEEEEEECCCh---HHHHHHHHHHHHCCCEEeCcCCCCCeEEEEC--Cc-hHHHHHHHHhhCCC
Confidence            334446667778999999999999732   3578899999999999999999999999998  43 334443332   47


Q ss_pred             CceecHHHHHHHHHhCCcCCCCCCCC
Q 041003          256 KFLVHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       256 i~IV~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      ++||+++||++|++.++++||++|.|
T Consensus       101 ~~iV~~~Wv~dsi~~~~ll~e~~Y~~  126 (132)
T 1wf6_A          101 PHVVGAKWLLECFSKGYMLSEEPYIH  126 (132)
T ss_dssp             CCEEEHHHHHHHHHHSSCCCSGGGBC
T ss_pred             CeEechHHHHHHHHcCCcCCHhhccC
Confidence            99999999999999999999999987

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*

Probab=99.68  E-value=3.7e-17  Score=147.86  Aligned_cols=92  Identities=12%  Similarity=0.110  Sum_probs=84.5

Q ss_pred             ccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccC-CCccEEEEcCCCCCcHHHHHHHHCCCceecHHH
Q 041003          185 LGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYN-LSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQW  263 (282)
Q Consensus       185 L~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~-~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~W  263 (282)
                      ....+..+|.||+|+|||..+   +++..++++++.+||+++.+++ +++||||+.  +..+.|+..|+++|++||+++|
T Consensus       192 ~~~~~~~~f~g~~i~~tG~~~---~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~--~~~g~K~~~A~~~gi~IV~~~W  266 (298)
T 3olc_X          192 MEDFKCPIFLGCIICVTGLCG---LDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQ--EPKGQKYECAKRWNVHCVTTQW  266 (298)
T ss_dssp             GGGGBCCTTTTCEEEECSCCH---HHHHHHHHHHHHTTCEECSSCCTTTCCEEECS--SSCSHHHHHHHHTTCEEECHHH
T ss_pred             cccccccccCCeEEEEeCCCC---ccHHHHHHHHHHcCCEEeceecCCCceEEEEe--CCCchHHHHHHHCCCeEEeHHH
Confidence            456678899999999999754   3588999999999999999999 899999999  7788999999999999999999


Q ss_pred             HHHHHHhCCcCCCCCCCC
Q 041003          264 IYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       264 L~~c~~~~~r~~E~~y~~  281 (282)
                      |.+|++.++++||++|.+
T Consensus       267 l~dsi~~g~~lde~~Y~l  284 (298)
T 3olc_X          267 FFDSIEKGFCQDESIYKT  284 (298)
T ss_dssp             HHHHHHHTSCCCGGGSBS
T ss_pred             HHHHHHCCCCCCchhcCC
Confidence            999999999999999975

>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A

Probab=99.68  E-value=1.4e-16  Score=121.81  Aligned_cols=88  Identities=16%  Similarity=0.106  Sum_probs=79.4

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHC--CCceecHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQH--NKFLVHPQWIYAA  267 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~--gi~IV~~~WL~~c  267 (282)
                      ..+|.||+++|+|..|..  ++..+++++.++||.+...++++|||+|+.  ++.+.++..|.+.  ++.+|+|+||++|
T Consensus         5 pd~F~g~~f~l~~~~p~~--~r~~l~ryiia~GG~v~~~~~~~vTHvIt~--~~~d~~~~~a~~~~p~~~~V~P~WI~~C   80 (104)
T 3pc6_A            5 PDFFEGKHFFLYGEFPGD--ERRRLIRYVTAFNGELEDYMNERVQFVITA--QEWDPNFEEALMENPSLAFVRPRWIYSC   80 (104)
T ss_dssp             CCTTTTCEEEEESCCSTT--HHHHHHHHHHHTTCEECSSCCTTCCEEEES--SCCCHHHHHHHTTCTTCEEECHHHHHHH
T ss_pred             chhhCCeEEEEcCCCcHH--HHHHHHHHHHHcCCEEEcccCCCceEEEeC--CCCChhHHHHhhhCCCCeEEccHHHHHH
Confidence            358999999999998743  578899999999999999999999999999  7788999888763  6999999999999


Q ss_pred             HHhCCcCCCCCCCC
Q 041003          268 YYLWSRQVEKDYFP  281 (282)
Q Consensus       268 ~~~~~r~~E~~y~~  281 (282)
                      +..++.+|+++|..
T Consensus        81 i~~~klvp~~~y~~   94 (104)
T 3pc6_A           81 NEKQKLLPHQLYGV   94 (104)
T ss_dssp             HHHTSCCCGGGGBC
T ss_pred             HhcCccCCccccee
Confidence            99999999999975

>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3

Probab=99.60  E-value=1.1e-15  Score=132.59  Aligned_cols=89  Identities=13%  Similarity=0.065  Sum_probs=78.8

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCC----CCcHHHHHHHHCCCceecHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR----LGIKGHRLAEQHNKFLVHPQWIY  265 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~----~~t~K~~~A~~~gi~IV~~~WL~  265 (282)
                      ...+++++|++||+.+.   ++..+.++++.+||.++.++++.+||||+....    ..|.|+..|...|++||+++||.
T Consensus         2 ~~~~~~~~i~~sg~~~~---~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~Wl~   78 (229)
T 1l0b_A            2 ERAERDISMVVSGLTPK---EVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSWVI   78 (229)
T ss_dssp             -CCCCCCEEEEESCCHH---HHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHHHH
T ss_pred             CCCCCCeEEEEcCCCHH---HHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHHHH
Confidence            45789999999998442   367899999999999999999999999999432    47999999999999999999999


Q ss_pred             HHHHhCCcCCCCCCCC
Q 041003          266 AAYYLWSRQVEKDYFP  281 (282)
Q Consensus       266 ~c~~~~~r~~E~~y~~  281 (282)
                      +|++.++.+||++|..
T Consensus        79 ~~~~~~~~~~e~~y~~   94 (229)
T 1l0b_A           79 KSIQERKLLSVHEFEV   94 (229)
T ss_dssp             HHHTTTSCCCSGGGBC
T ss_pred             HHHHCCCcCChHHeEe
Confidence            9999999999999964

>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A

Probab=99.57  E-value=2.7e-15  Score=128.73  Aligned_cols=85  Identities=16%  Similarity=0.036  Sum_probs=76.2

Q ss_pred             cceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCC-CCcHHHHHHHHCCCceecHHHHHHHHHhCC
Q 041003          194 VRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR-LGIKGHRLAEQHNKFLVHPQWIYAAYYLWS  272 (282)
Q Consensus       194 ~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~-~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~  272 (282)
                      .|++|++||+.+   .++..+.++++.+||.+.+++++++||||+.++. ..|.|+..|...|++||+++||.+|++.++
T Consensus         1 ~~~vi~~sg~~~---~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~~   77 (210)
T 2nte_A            1 GPLVLIGSGLSS---EQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRKV   77 (210)
T ss_dssp             CCCEEEESSCCH---HHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHTS
T ss_pred             CCEEEEECCCCH---HHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcCC
Confidence            378999999854   2477899999999999999999999999998432 679999999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 041003          273 RQVEKDYFP  281 (282)
Q Consensus       273 r~~E~~y~~  281 (282)
                      .+||++|.+
T Consensus        78 ~~~e~~y~~   86 (210)
T 2nte_A           78 CEQEEKYEI   86 (210)
T ss_dssp             CCCGGGTBC
T ss_pred             cCChhhccC
Confidence            999999975

>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A

Probab=99.57  E-value=3.2e-15  Score=128.13  Aligned_cols=85  Identities=18%  Similarity=0.074  Sum_probs=75.5

Q ss_pred             cceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCC----CCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          194 VRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR----LGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       194 ~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~----~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      +|+++++||+.+   .++..+.++++.+||.++.++++++||||+.+..    ..|.|+..|...|++||+++||.+|++
T Consensus         3 ~~~~~~~sg~~~---~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~~   79 (214)
T 1t15_A            3 KRMSMVVSGLTP---EEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIK   79 (214)
T ss_dssp             -CCEEEEESCCH---HHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHH
T ss_pred             CcEEEEECCCCH---HHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHHH
Confidence            589999999843   2467899999999999999999999999999532    469999999999999999999999999


Q ss_pred             hCCcCCCCCCCC
Q 041003          270 LWSRQVEKDYFP  281 (282)
Q Consensus       270 ~~~r~~E~~y~~  281 (282)
                      .++++||++|..
T Consensus        80 ~~~~~~e~~y~~   91 (214)
T 1t15_A           80 ERKMLNEHDFEV   91 (214)
T ss_dssp             TTSCCCGGGGBC
T ss_pred             CCCcCChHHeEe
Confidence            999999999964

>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}

Probab=99.56  E-value=3.1e-15  Score=129.50  Aligned_cols=90  Identities=11%  Similarity=0.087  Sum_probs=78.8

Q ss_pred             chhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003          187 KIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA  266 (282)
Q Consensus       187 ~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~  266 (282)
                      .++..++.|++|+|||+.+.   ++..+.++++.+||.++++. +++||||+.. ..+|.|+..|...|++||+++||.+
T Consensus         8 ~~~~~~~~~~~i~~SG~~~~---~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~-~~rT~K~l~A~~~g~~IVs~~Wl~~   82 (219)
T 3sqd_A            8 HMKLTPELTPFVLFTGFEPV---QVQQYIKKLYILGGEVAESA-QKCTHLIASK-VTRTVKFLTAISVVKHIVTPEWLEE   82 (219)
T ss_dssp             -CCCCGGGCCEEEECSCCHH---HHHHHHHHHHHTTCEECSSG-GGCSEEECSS-CCCCHHHHHHTTTCSEEECHHHHHH
T ss_pred             ccccCCCCCeEEEEeCCChH---HHHHHHHHHHHCCCEEeCCC-CCceEEEECC-CCCCHHHHHHHHcCCCEecHHHHHH
Confidence            35667899999999997443   36788999999999999886 8999999983 3578899999999999999999999


Q ss_pred             HHHhCCcCCCCCCCC
Q 041003          267 AYYLWSRQVEKDYFP  281 (282)
Q Consensus       267 c~~~~~r~~E~~y~~  281 (282)
                      |++.++.+||++|..
T Consensus        83 c~~~~~~l~e~~y~l   97 (219)
T 3sqd_A           83 CFRCQKFIDEQNYIL   97 (219)
T ss_dssp             HHHHTSCCCSGGGBC
T ss_pred             HHHcCCCCChHhccC
Confidence            999999999999964

>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A

Probab=99.51  E-value=2.7e-14  Score=122.59  Aligned_cols=86  Identities=12%  Similarity=-0.010  Sum_probs=70.5

Q ss_pred             hhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHH
Q 041003          188 IQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAA  267 (282)
Q Consensus       188 ~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c  267 (282)
                      .+.+.+.|++|+|||+.+      ..+.++++.+||.+..++++ +||||+.. -..|.|+..|...|++||+++||.+|
T Consensus         5 ~~~~~~~~~~v~~sG~~~------~~~~~~i~~lGg~~~~~~~~-~THlI~~~-~~rt~K~l~a~~~g~~IV~~~Wl~~~   76 (209)
T 2etx_A            5 KLNQESTAPKVLFTGVVD------ARGERAVLALGGSLAGSAAE-ASHLVTDR-IRRTVKFLCALGRGIPILSLDWLHQS   76 (209)
T ss_dssp             -------CCEEEECSSCC------HHHHHHHHHTTCEECSSTTT-CSEEECSS-CCCSHHHHHHHHHTCCEECTHHHHHH
T ss_pred             cccccCCCcEEEEeCCCc------HHHHHHHHHCCCEEeCCCCC-ceEEEECC-CCCCHHHHHHHhcCCccccHHHHHHH
Confidence            356789999999999854      23588999999999999885 99999982 24699999999999999999999999


Q ss_pred             HHhCCcCCCCCCCC
Q 041003          268 YYLWSRQVEKDYFP  281 (282)
Q Consensus       268 ~~~~~r~~E~~y~~  281 (282)
                      ++.++.+||++|..
T Consensus        77 ~~~~~~l~e~~y~~   90 (209)
T 2etx_A           77 RKAGFFLPPDEYVV   90 (209)
T ss_dssp             HHHTSCCCSGGGBC
T ss_pred             HHcCCCCChhhccc
Confidence            99999999999974

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*

Probab=99.48  E-value=4.6e-14  Score=127.55  Aligned_cols=84  Identities=14%  Similarity=0.162  Sum_probs=75.8

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      ..+|.|++|++||+.+.   ++..+.++++.+||+++.++++++||||+.  +..|.|+..|.+.|++||+++||.+|+.
T Consensus       103 ~~~l~g~~~~~tG~~~~---~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~--~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~  177 (298)
T 3olc_X          103 NMVMSDVTISCTSLEKE---KREEVHKYVQMMGGRVYRDLNVSVTHLIAG--EVGSKKYLVAANLKKPILLPSWIKTLWE  177 (298)
T ss_dssp             CCTTTTCEEEEESCCHH---HHHHHHHHHHHTTCEECSSCCTTCCEEEES--SSCSHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred             ccccCCeEEEeCCCcHH---hHHHHHHHHHHCCCEEecCcCCCeeEEEEe--CCCChHHHHHHHCCCeEeeHHHHHHHHH
Confidence            45899999999998553   488999999999999999999999999999  7789999999999999999999999999


Q ss_pred             hCCcCCCCC
Q 041003          270 LWSRQVEKD  278 (282)
Q Consensus       270 ~~~r~~E~~  278 (282)
                      .++.+++..
T Consensus       178 ~~~~~~~~~  186 (298)
T 3olc_X          178 KSQEKKITR  186 (298)
T ss_dssp             HHHTTCCSS
T ss_pred             cCCcCCccc
Confidence            988776543

>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*

Probab=99.45  E-value=1.1e-13  Score=121.08  Aligned_cols=86  Identities=14%  Similarity=0.047  Sum_probs=74.0

Q ss_pred             eecceeEEeeccCCCCccchhHHHHHHHHhCCeEec--ccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTD--VYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       192 vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~--~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      +-++.+++|||+.+   .++..+.+.++.+||.+..  +++++|||||+.. ...|.|+..|...|++||+++||.+|.+
T Consensus         6 ~~~~~~~~~Sg~~~---~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~-~~RT~K~l~aia~G~wIvs~~wl~~s~~   81 (235)
T 3al2_A            6 LKKQYIFQLSSLNP---QERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGH-PLRNEKYLASVAAGKWVLHRSYLEACRT   81 (235)
T ss_dssp             --CCCEEEEESCCH---HHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESS-CCCSHHHHHHHHTTCEEECTHHHHHHHH
T ss_pred             CCCCEEEEEcCCCH---HHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECC-CCCCHHHHHHHHcCCcCccHHHHHHHHH
Confidence            44788999999743   2467799999999999976  5889999999993 2359999999999999999999999999


Q ss_pred             hCCcCCCCCCCC
Q 041003          270 LWSRQVEKDYFP  281 (282)
Q Consensus       270 ~~~r~~E~~y~~  281 (282)
                      .++.+||++|+.
T Consensus        82 ~g~~l~E~~ye~   93 (235)
T 3al2_A           82 AGHFVQEEDYEW   93 (235)
T ss_dssp             HTSCCCSGGGBT
T ss_pred             cCCCCChhceee
Confidence            999999999963

>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=105.84  Aligned_cols=90  Identities=10%  Similarity=-0.035  Sum_probs=68.7

Q ss_pred             chhheeecceeEEeeccCCCCc--cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHH-HH-----CCCce
Q 041003          187 KIQRQILVRCTLFFSRDVDDKE--FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLA-EQ-----HNKFL  258 (282)
Q Consensus       187 ~~r~~vl~G~~i~fsg~~~~~~--~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A-~~-----~gi~I  258 (282)
                      +..+++|+||+++|-   |.+.  +.+.-...+|..+||+++.+++++|||||+.  +..+.+..++ .+     .+++|
T Consensus         6 ~~~~~~F~g~~v~~~---p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd--~~~s~~~~l~~l~~~~l~~~~~i   80 (106)
T 2jw5_A            6 EEAEEWLSSLRAHVV---RTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVD--EGMDYERALRLLRLPQLPPGAQL   80 (106)
T ss_dssp             CCGGGCGGGSCCCBC---TTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEEC--SSSCHHHHHHHTTCSSCCSSCEE
T ss_pred             ccCcCEeCCeEEEEE---ecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEc--CCCCHHHHHHHHhhcccCCCcEE
Confidence            457889999999973   3322  2344455699999999999999999999998  4344433221 11     24689


Q ss_pred             ecHHHHHHHHHhCCcCCCCCCCC
Q 041003          259 VHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       259 V~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      |+++|+++|++.++.+||+.|..
T Consensus        81 V~~~Wv~dci~~~~llde~~y~~  103 (106)
T 2jw5_A           81 VKSAWLSLCLQERRLVDVAGFSI  103 (106)
T ss_dssp             EEHHHHHHHHHTCSCCCGGGTBC
T ss_pred             ecCchHHHHHhcCcccCcccccc
Confidence            99999999999999999999964

>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*

Probab=99.40  E-value=3.6e-13  Score=114.83  Aligned_cols=83  Identities=12%  Similarity=0.033  Sum_probs=72.1

Q ss_pred             ceeEEeeccCCCCccchhHHHHHHHHhCC-eEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCCc
Q 041003          195 RCTLFFSRDVDDKEFEFPLLKWRAGELGA-ACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSR  273 (282)
Q Consensus       195 G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga-~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r  273 (282)
                      .-++++||+-+   .++..+.+.++.+|| .++.++++.+||||+.+ ...|.|+..|...|++||+++||.+|++.+++
T Consensus        11 ~~~~~~sgl~~---~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~-~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~~   86 (199)
T 3u3z_A           11 TRTLVMTSMPS---EKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGK-PLRTLNVLLGIARGCWVLSYDWVLWSLELGHW   86 (199)
T ss_dssp             CCEEEEESCCH---HHHHHHHHHHHHHCSCEEESSCCTTEEEEEESS-CCCBHHHHHHHHTTCEEEETHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCH---HHHHHHHHHHHHcCCcEEecCCCCCCeEEEECC-CCCCHHHHHHHHCCCcEEeHHHHHHHhhCCCC
Confidence            45788898733   246778999999977 78899999999999983 25899999999999999999999999999999


Q ss_pred             CCCCCCCC
Q 041003          274 QVEKDYFP  281 (282)
Q Consensus       274 ~~E~~y~~  281 (282)
                      +||++|..
T Consensus        87 l~e~~y~~   94 (199)
T 3u3z_A           87 ISEEPFEL   94 (199)
T ss_dssp             CCSGGGBC
T ss_pred             CChhhccc
Confidence            99999964

>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*

Probab=99.34  E-value=8.7e-13  Score=114.11  Aligned_cols=81  Identities=12%  Similarity=0.053  Sum_probs=70.7

Q ss_pred             ecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCC
Q 041003          193 LVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWS  272 (282)
Q Consensus       193 l~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~  272 (282)
                      -++.+|+|||+.+..      ..+.++.+||.++++++ ++||||+.. -..|.|+..|...|++||+++||.+|++.++
T Consensus         6 ~~~~~v~fSG~~~~~------~~~~i~~lGg~v~~~~~-~~THlV~~~-~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~~~   77 (220)
T 3l41_A            6 SKRVYITFTGYDKKP------SIDNLKKLDMSITSNPS-KCTHLIAPR-ILRTSKFLCSIPYGPCVVTMDWINSCLKTHE   77 (220)
T ss_dssp             -CCEEEEECSCSSCC------CCGGGGGGTEEECSCTT-TCSEEECSS-CCCBHHHHHHGGGCCEEECHHHHHHHHHHTS
T ss_pred             cceEEEEEeccCCCC------CcchHhhcceeeccCch-hhhhhhhhh-HhhhcceeecCCCCCeEEEhHHHHhhhhhhh
Confidence            367899999986643      27789999999999885 699999983 3479999999999999999999999999999


Q ss_pred             cCCCCCCCC
Q 041003          273 RQVEKDYFP  281 (282)
Q Consensus       273 r~~E~~y~~  281 (282)
                      .+||++|..
T Consensus        78 ~l~e~~y~l   86 (220)
T 3l41_A           78 IVDEEPYLL   86 (220)
T ss_dssp             CCCSGGGBC
T ss_pred             ccccCcccc
Confidence            999999964

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*

Probab=99.30  E-value=5.9e-12  Score=111.73  Aligned_cols=94  Identities=11%  Similarity=0.120  Sum_probs=69.1

Q ss_pred             hhheeecceeEEeeccCCCCc------c-chhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHH---CCCc
Q 041003          188 IQRQILVRCTLFFSRDVDDKE------F-EFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQ---HNKF  257 (282)
Q Consensus       188 ~r~~vl~G~~i~fsg~~~~~~------~-~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~---~gi~  257 (282)
                      .+..+|+||+++|.+....+.      . ....+..++..+||+++..++++|||||+..............+   .+++
T Consensus       160 ~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~  239 (263)
T 3ii6_X          160 SPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFK  239 (263)
T ss_dssp             CGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCE
T ss_pred             CcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCE
Confidence            467899999999976432111      0 12345789999999999999999999999832222111221122   3689


Q ss_pred             eecHHHHHHHHHhCCcCCCCCCCC
Q 041003          258 LVHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       258 IV~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      ||+++||.+|++.++++||++|.+
T Consensus       240 iV~~~Wv~dci~~~~~l~E~~Y~i  263 (263)
T 3ii6_X          240 ILKESWVTDSIDKCELQEENQYLI  263 (263)
T ss_dssp             EEETHHHHHHHHTTSCCCGGGTBC
T ss_pred             EeChHHHHHHHHcCCcCCHhhCCC
Confidence            999999999999999999999963

>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B

Probab=99.29  E-value=4.5e-12  Score=112.26  Aligned_cols=91  Identities=8%  Similarity=0.080  Sum_probs=77.5

Q ss_pred             heeecceeEEeeccCCCCc--------------------------cchhHHHHHHHHhCCeEecccCCC------ccEEE
Q 041003          190 RQILVRCTLFFSRDVDDKE--------------------------FEFPLLKWRAGELGAACTDVYNLS------VAQVV  237 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~--------------------------~~~~~l~~~~~~~Ga~v~~~~~~~------vTHlV  237 (282)
                      ..+|.|+.+++|+....+.                          ..+..+.++++.+||.++.+++..      +||||
T Consensus        13 ~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LI   92 (259)
T 1kzy_C           13 KTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLI   92 (259)
T ss_dssp             TTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEE
T ss_pred             CcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEEE
Confidence            5699999999999865310                          145789999999999999998865      79999


Q ss_pred             EcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCCcCCCCCCCC
Q 041003          238 SVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       238 ~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      +.+ ...|.|+.+|.+.|++||+++||.+|++.++.+|+++|..
T Consensus        93 a~~-~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l  135 (259)
T 1kzy_C           93 ADQ-HCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLL  135 (259)
T ss_dssp             ESS-CCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBC
T ss_pred             cCC-CCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccC
Confidence            983 3679999999999999999999999999999999999863

>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2

Probab=99.29  E-value=5.4e-12  Score=94.28  Aligned_cols=76  Identities=14%  Similarity=0.011  Sum_probs=69.1

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      ..+|.|.++||||.++.   .+..+..+++.+||+++.+++.++||||++  ...+.|+..|.++||+||+.+|+.+++.
T Consensus         5 ~~~l~G~~~v~TG~l~~---~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g--~~~gsK~~kA~~lgI~Ii~E~~f~~~l~   79 (92)
T 1l7b_A            5 GEALKGLTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVG--ENPGSKLEKARALGVPTLTEEELYRLLE   79 (92)
T ss_dssp             CCSSTTCEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEEC--SSSSTTHHHHHCSSSCCEEHHHHHHHHH
T ss_pred             CCCcCCcEEEEecCCCC---CHHHHHHHHHHcCCEEeCcccCCeeEEEeC--CCCChHHHHHHHcCCcEEeHHHHHHHHH
Confidence            45799999999999876   389999999999999999999999999999  5556999999999999999999999886


Q ss_pred             h
Q 041003          270 L  270 (282)
Q Consensus       270 ~  270 (282)
                      .
T Consensus        80 ~   80 (92)
T 1l7b_A           80 A   80 (92)
T ss_dssp             H
T ss_pred             h
Confidence            4

>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*

Probab=99.28  E-value=7.8e-12  Score=109.58  Aligned_cols=87  Identities=23%  Similarity=0.181  Sum_probs=73.7

Q ss_pred             eeecceeEEeecc--CCCCccchhHHHHHHHHhCCeEecc-----c--CC-------------------CccEEEEcCCC
Q 041003          191 QILVRCTLFFSRD--VDDKEFEFPLLKWRAGELGAACTDV-----Y--NL-------------------SVAQVVSVSSR  242 (282)
Q Consensus       191 ~vl~G~~i~fsg~--~~~~~~~~~~l~~~~~~~Ga~v~~~-----~--~~-------------------~vTHlV~~~~~  242 (282)
                      .+|.||.++++|.  .+.  ..+..+.++++.+||++..+     +  ..                   ..||||+.+ .
T Consensus         1 ~lF~g~~F~ls~~~~~~~--~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~-~   77 (241)
T 2vxb_A            1 LIFDDCVFAFSGPVHEDA--YDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDT-F   77 (241)
T ss_dssp             CTTTTEEEEECCCSSTTS--SCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSS-C
T ss_pred             CCCCCcEEEEecCCCCch--hhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCC-C
Confidence            4799999999998  332  35788999999999999886     2  21                   249999984 3


Q ss_pred             CCcHHHHHHHHCCCceecHHHHHHHHHhCCcCCCCCCC
Q 041003          243 LGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       243 ~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~y~  280 (282)
                      ..|.|+.+|.+.|++||+++||.+|+..++.+|+++|.
T Consensus        78 ~rt~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~yl  115 (241)
T 2vxb_A           78 SRKVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYL  115 (241)
T ss_dssp             CCCHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGB
T ss_pred             CCcHHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhcc
Confidence            46999999999999999999999999999999999875

>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=5.1e-12  Score=95.86  Aligned_cols=81  Identities=16%  Similarity=0.314  Sum_probs=65.9

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecc-----------cCCCccEEEEcCCCCCcHHHHHHHHCCCc
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDV-----------YNLSVAQVVSVSSRLGIKGHRLAEQHNKF  257 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~-----------~~~~vTHlV~~~~~~~t~K~~~A~~~gi~  257 (282)
                      .+++|+|+++++++-.|     +..+..++.++||+++.+           .+.++||+|+.  ++...+    +..+..
T Consensus         9 ~~~LF~g~~F~i~~e~p-----~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~d--rp~~~~----~~~~r~   77 (100)
T 2ep8_A            9 HKKLFEGLKFFLNREVP-----REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVD--RPGQQT----SVIGRC   77 (100)
T ss_dssp             SCCTTSSCEEECCSSSC-----HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECS--CTTTSC----CBTTBE
T ss_pred             hHHHcCCcEEEEecCCC-----HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEec--ccchhh----hcCCCe
Confidence            36789999999987544     678889999999999875           25789999998  543222    124679


Q ss_pred             eecHHHHHHHHHhCCcCCCCCCC
Q 041003          258 LVHPQWIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       258 IV~~~WL~~c~~~~~r~~E~~y~  280 (282)
                      +|.|+||.+|+...+.+|+++|.
T Consensus        78 ~VqPqWV~Dcin~~~lLp~~~Y~  100 (100)
T 2ep8_A           78 YVQPQWVFDSVNARLLLPVAEYF  100 (100)
T ss_dssp             EECTHHHHHHHHHTSCCCTTTCC
T ss_pred             EEcchHHHHHHhcCCcCChhhcC
Confidence            99999999999999999999994

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*

Probab=99.26  E-value=8.5e-12  Score=110.69  Aligned_cols=90  Identities=17%  Similarity=0.105  Sum_probs=74.1

Q ss_pred             ccchhheeecceeEEe-eccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCC-CceecHH
Q 041003          185 LGKIQRQILVRCTLFF-SRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHN-KFLVHPQ  262 (282)
Q Consensus       185 L~~~r~~vl~G~~i~f-sg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~g-i~IV~~~  262 (282)
                      +.....++|+|+.+++ +|..   .+.+..|.+++..+||++..+.++.+||+|+.  + .+.|+..|.+.| ++||+|+
T Consensus         3 ~~~~~s~lF~G~~f~V~sg~~---~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~--~-~~~k~~~~~~~g~~~IV~p~   76 (263)
T 3ii6_X            3 MGSKISNIFEDVEFCVMSGTD---SQPKPDLENRIAEFGGYIVQNPGPDTYCVIAG--S-ENIRVKNIILSNKHDVVKPA   76 (263)
T ss_dssp             ---CCCCTTTTCEEEECCCC-----CCHHHHHHHHHHTTCEECSSCCTTEEEEECS--S-CCHHHHHHHHSCSCCEECHH
T ss_pred             CCCcCcccCCCeEEEEEcCCC---CCCHHHHHHHHHHcCCEEEecCCCCEEEEEeC--C-CCHHHHHHHhcCCCCEeehH
Confidence            4455788999999987 5531   14588999999999999999888888888887  4 458999999987 9999999


Q ss_pred             HHHHHHHhCCcCCCCCCC
Q 041003          263 WIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       263 WL~~c~~~~~r~~E~~y~  280 (282)
                      ||.+|+..++.+|-++|.
T Consensus        77 Wv~Dci~~~~llp~~p~~   94 (263)
T 3ii6_X           77 WLLECFKTKSFVPWQPRF   94 (263)
T ss_dssp             HHHHHHHHTSCCCCCGGG
T ss_pred             HHHHHHhcCCcCCCCHHH
Confidence            999999999999988774

>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=4.4e-11  Score=93.32  Aligned_cols=90  Identities=13%  Similarity=-0.027  Sum_probs=67.5

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHH-------CCCceecHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQ-------HNKFLVHPQ  262 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~-------~gi~IV~~~  262 (282)
                      ...|+||+|+|-..- .+...+.-+.+++..+||++.+.++++|||||+.  +...+.+..-.+       .+.++|+..
T Consensus        18 ~~~F~g~~iy~v~~~-~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve--~~~~~e~~~~l~~~~l~~~~~~~lv~i~   94 (120)
T 2coe_A           18 DIKFQDLVVFILEKK-MGTTRRALLMELARRKGFRVENELSDSVTHIVAE--NNSGSDVLEWLQAQKVQVSSQPELLDVS   94 (120)
T ss_dssp             CCSCTTCEEEEECTT-TCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEES--SCCHHHHHHHHHHCCCCCSSCCEEEEHH
T ss_pred             ccccCCeEEEEeecc-cchHHHHHHHHHHHHcCCEEeeccCCCcCEEEec--CCCHHHHHHHHhccccccccccEEeecH
Confidence            468999999994331 1112345667999999999999999999999997  433322221112       257999999


Q ss_pred             HHHHHHHhCCcCCCCCCCCC
Q 041003          263 WIYAAYYLWSRQVEKDYFPL  282 (282)
Q Consensus       263 WL~~c~~~~~r~~E~~y~~~  282 (282)
                      |+++|++.++.+||+.|.-|
T Consensus        95 Wl~esmk~g~lv~ee~~~~l  114 (120)
T 2coe_A           95 WLIECIGAGKPVEMTGKHQL  114 (120)
T ss_dssp             HHHHHHHTTSCCCCSSSSBC
T ss_pred             HHHHHHHcCCccCcccceEe
Confidence            99999999999999887643

>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A

Probab=99.22  E-value=5e-11  Score=91.73  Aligned_cols=80  Identities=10%  Similarity=-0.032  Sum_probs=70.8

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHH
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAY  268 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~  268 (282)
                      ...+|.|.++||||.++..  .+..+..+++.+||+|+.+++.+++|||+++ +.++.|...|.++||+||+.+|+.+.+
T Consensus        29 ~~~~l~G~~~v~TG~l~~~--~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~-~~g~sK~~kA~~lgI~Ii~E~~f~~ll  105 (109)
T 2k6g_A           29 AENCLEGLIFVITGVLESI--ERDEAKSLIERYGGKVTGNVSKKTNYLVMGR-DSGQSKSDKAAALGTKIIDEDGLLNLI  105 (109)
T ss_dssp             CTTTTTTCEEEEESBCSSC--CHHHHHHHHHHTTCEEESSCCTTCCEEEECB-CCCHHHHHHHHHHTCEEECHHHHHHHH
T ss_pred             CCCCCCCCEEEEeeeCCCC--CHHHHHHHHHHcCCEeeCcccCCceEEEECC-CCChHHHHHHHHcCCeEEeHHHHHHHH
Confidence            3468999999999998653  4889999999999999999999999999994 345599999999999999999999998


Q ss_pred             HhC
Q 041003          269 YLW  271 (282)
Q Consensus       269 ~~~  271 (282)
                      ...
T Consensus       106 ~~~  108 (109)
T 2k6g_A          106 RNL  108 (109)
T ss_dssp             HHT
T ss_pred             HhC
Confidence            754

>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=8.1e-11  Score=90.84  Aligned_cols=78  Identities=10%  Similarity=-0.021  Sum_probs=70.3

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      .++|.|.+|+|||.++..  .+..+..+++.+||+|+..++.+++|||++. +.++.|...|.++||+|++.+|+.+.+.
T Consensus        20 ~~~l~G~~~v~TG~l~~~--~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~-~~g~sKl~KA~~lgI~IisE~~f~~ll~   96 (112)
T 2ebu_A           20 ENCLEGLIFVITGVLESI--ERDEAKSLIERYGGKVTGNVSKKTNYLVMGR-DSGQSKSDKAAALGTKIIDEDGLLNLIR   96 (112)
T ss_dssp             SSSSTTCEEEECSCCSSS--CHHHHHHHHHHTTCEECSSCCSSCCEEEECS-SCCSHHHHHHHHHTCEEEEHHHHHHHHH
T ss_pred             CCCcCCCEEEEeeeCCCC--CHHHHHHHHHHcCCEEeccccCCeeEEEecC-CCChHHHHHHHHcCCeEEeHHHHHHHHh
Confidence            468999999999998653  4889999999999999999999999999994 4566999999999999999999999987


Q ss_pred             h
Q 041003          270 L  270 (282)
Q Consensus       270 ~  270 (282)
                      .
T Consensus        97 ~   97 (112)
T 2ebu_A           97 T   97 (112)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}

Probab=99.17  E-value=9.2e-12  Score=110.27  Aligned_cols=92  Identities=13%  Similarity=0.146  Sum_probs=51.5

Q ss_pred             hhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHH----HHHHHHC---------
Q 041003          188 IQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKG----HRLAEQH---------  254 (282)
Q Consensus       188 ~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K----~~~A~~~---------  254 (282)
                      ....+|+||+++|+|..+..  ....+..++.++||+++.+++..+||||+..+.....+    .+.....         
T Consensus       156 ~~~~lF~g~~~yl~~~~~~~--~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (264)
T 1z56_C          156 FPLFLFSNRIAYVPRRKIST--EDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTIP  233 (264)
T ss_dssp             CCCC----------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSCC
T ss_pred             CchhhhCCeEEEEecCCCch--hHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhcccccccC
Confidence            45679999999999864332  24556788999999999999977778877621111122    2221111         


Q ss_pred             C-CceecHHHHHHHHHhCCcCCCCCCCC
Q 041003          255 N-KFLVHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       255 g-i~IV~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      + .+||+++||++|++.++++||+.|.|
T Consensus       234 ~~~~iV~~~Wv~dci~~~~ll~e~~Y~~  261 (264)
T 1z56_C          234 KIARVVAPEWVDHSINENCQVPEEDFPV  261 (264)
T ss_dssp             CCCEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred             CCCEEecHHHHHHHHHcCCcCCHHHcCC
Confidence            3 49999999999999999999999987

>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*

Probab=99.14  E-value=5.3e-11  Score=87.74  Aligned_cols=74  Identities=18%  Similarity=0.290  Sum_probs=62.2

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCC-CccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNL-SVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAY  268 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~-~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~  268 (282)
                      ..+|.|+++++.+-+|.    ...+.+++.++||++..+++. ++||+|+.  +.        ...+...|+|+||++|+
T Consensus        14 pdiFsg~~~~l~~~v~~----~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~--~~--------~~~~~~~V~p~WI~dcI   79 (88)
T 3pc7_A           14 LDIFTGVRLYLPPSTPD----FSRLRRYFVAFDGDLVQEFDMTSATHVLGS--RD--------KNPAAQQVSPEWIWACI   79 (88)
T ss_dssp             CCCSTTCEECCCTTSTT----HHHHHHHHHHTTCEECCGGGGGGCSEEESC--CT--------TCTTSEEECHHHHHHHH
T ss_pred             ChhhcCeEEEccCCcCc----hhhheeeeeecCCEEecccCCCcCeEEecC--CC--------cCCCCcEEchHHHHHHH
Confidence            57999999999776653    367899999999999888875 99999987  32        23478999999999999


Q ss_pred             HhCCcCCCC
Q 041003          269 YLWSRQVEK  277 (282)
Q Consensus       269 ~~~~r~~E~  277 (282)
                      ..++.++++
T Consensus        80 ~k~~Ll~~~   88 (88)
T 3pc7_A           80 RKRRLVAPS   88 (88)
T ss_dssp             HHTSCCSCC
T ss_pred             hCCcccCCC
Confidence            999998864

>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A

Probab=99.10  E-value=1.7e-10  Score=89.28  Aligned_cols=84  Identities=11%  Similarity=0.005  Sum_probs=70.1

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCC-CCCcHHHHHHHHCCCceecHHHHH---
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSS-RLGIKGHRLAEQHNKFLVHPQWIY---  265 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~-~~~t~K~~~A~~~gi~IV~~~WL~---  265 (282)
                      ..+|.|.+++|||.++.   .+..+.++++.+||+++..++..+||||++.+ +..+.|..+|.++||+||+.+||.   
T Consensus         8 ~~~l~G~~~ViTG~l~~---~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~~   84 (113)
T 2cok_A            8 DKPLSNMKILTLGKLSR---NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDVS   84 (113)
T ss_dssp             CCSSSSCEEEECSCCSS---CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHHH
T ss_pred             CCCcCCCEEEEEecCCC---CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHHH
Confidence            45799999999999865   38899999999999999999999999999932 125689999999999999999954   


Q ss_pred             -------HHHHhCCcCCC
Q 041003          266 -------AAYYLWSRQVE  276 (282)
Q Consensus       266 -------~c~~~~~r~~E  276 (282)
                             +|+...+..|-
T Consensus        85 ~~~~~~~~~i~k~~i~~w  102 (113)
T 2cok_A           85 ASTKSLQELFLAHILSSW  102 (113)
T ss_dssp             SCCSCHHHHHHHTBCSSC
T ss_pred             hhchhHHHHHHHhcCCCC
Confidence                   56665555553

>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*

Probab=98.97  E-value=1.7e-09  Score=84.99  Aligned_cols=88  Identities=9%  Similarity=0.003  Sum_probs=66.7

Q ss_pred             eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHH-HH----HH-----CCCceec
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHR-LA----EQ-----HNKFLVH  260 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~-~A----~~-----~gi~IV~  260 (282)
                      ..|.|++|++-+.-.+. ..+.-|.++|...|+.+.+.++++|||||+.  +...+-+. +-    .+     .+.++|+
T Consensus         9 ~~F~~v~iyive~kmG~-sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E--~~s~~~~~~~L~~~~~~l~~~~~~~~lLd   85 (133)
T 2dun_A            9 TRFPGVAIYLVEPRMGR-SRRAFLTGLARSKGFRVLDACSSEATHVVME--ETSAEEAVSWQERRMAAAPPGCTPPALLD   85 (133)
T ss_dssp             CSEEEEEEEECHHHHCS-HHHHHHHHHHHHHTEEECSSCCTTCCEEEES--SCCHHHHHHHHHHHHHHSCTTCCCCEEEE
T ss_pred             cccCccEEEEecCCcCH-HHHHHHHHHHHhcCCEeccccCCCceEEEec--CCCHHHHHHHHHHhhcccCcCCCCcEEec
Confidence            46999999986542221 3457789999999999999999999999996  43322211 11    11     3579999


Q ss_pred             HHHHHHHHHhCCcCCCCCCCC
Q 041003          261 PQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       261 ~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      +.|+.+|++.++.+||+.|.-
T Consensus        86 isWltecm~~g~pV~~e~~~~  106 (133)
T 2dun_A           86 ISWLTESLGAGQPVPVECRHR  106 (133)
T ss_dssp             HHHHHHHHHHTSCCCCCTTTS
T ss_pred             cHHHHHHHhcCCcCCcccceE
Confidence            999999999999999987753

>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3

Probab=98.88  E-value=2.2e-09  Score=92.70  Aligned_cols=91  Identities=12%  Similarity=0.148  Sum_probs=61.6

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCC-----CccEEEEcCCCC--CcHHHH-HHHHCCCceec
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNL-----SVAQVVSVSSRL--GIKGHR-LAEQHNKFLVH  260 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~-----~vTHlV~~~~~~--~t~K~~-~A~~~gi~IV~  260 (282)
                      +..+|.|+.++|+|.+..  +.+..+.++++.+||++......     .+||+|+.....  ...++. .|.+.|++||+
T Consensus       114 ~~~lF~g~~~~~~~~~~~--~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iVs  191 (229)
T 1l0b_A          114 QEKLFEGLQIYCCEPFTN--MPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVM  191 (229)
T ss_dssp             C--CCTTCEEEECSCCSS--SCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEE
T ss_pred             hhhhhcCceEEEEecCCC--CCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEee
Confidence            468999999999875443  34788999999999999988865     368866552111  233444 34557999999


Q ss_pred             HHHHHHHHHhCCcCCCCCCCC
Q 041003          261 PQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       261 ~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      ++||.+|+..++.++|++|..
T Consensus       192 ~~WlldsI~~~~~~~~~~Y~l  212 (229)
T 1l0b_A          192 WDWVLDSISVYRCRDLDAYLV  212 (229)
T ss_dssp             THHHHHHHHTTSCCCGGGGBC
T ss_pred             hhHHHHHHhcCCcCCccceEc
Confidence            999999999999999999964

>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}

Probab=98.86  E-value=2.6e-10  Score=100.92  Aligned_cols=89  Identities=12%  Similarity=0.119  Sum_probs=68.5

Q ss_pred             heeecceeEEe-eccCCC---CccchhHHHHHHHHhCCeEecccCCC-----ccEEEEcCCCCCcHHHHHHHHCCCceec
Q 041003          190 RQILVRCTLFF-SRDVDD---KEFEFPLLKWRAGELGAACTDVYNLS-----VAQVVSVSSRLGIKGHRLAEQHNKFLVH  260 (282)
Q Consensus       190 ~~vl~G~~i~f-sg~~~~---~~~~~~~l~~~~~~~Ga~v~~~~~~~-----vTHlV~~~~~~~t~K~~~A~~~gi~IV~  260 (282)
                      .++|+||++++ +|....   ....+..|.+++..+||+++......     .||+|+.  + .|.|+..+.+.|++||+
T Consensus         3 s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~--~-~t~k~~~~~~~~~~vV~   79 (264)
T 1z56_C            3 SNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISC--K-TTTECKALIDRGYDILH   79 (264)
T ss_dssp             CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEEC--S-CCGGGGGGTTTTCCCBC
T ss_pred             cccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEec--C-CcHHHHHHHhCCCCEEe
Confidence            57999999976 664321   11246789999999999887644332     4778877  3 57787777777899999


Q ss_pred             HHHHHHHHHhCCcCCCCCCCC
Q 041003          261 PQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       261 ~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      |+||.+|+..++.+|.++|..
T Consensus        80 p~Wv~dci~~~~llp~~~y~~  100 (264)
T 1z56_C           80 PNWVLDCIAYKRLILIEPNYC  100 (264)
T ss_dssp             SSTTHHHHSSCSCCCCCSCBS
T ss_pred             chHHHHHhhcCCCCCCChHHh
Confidence            999999999999999998843

>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A

Probab=98.85  E-value=2e-09  Score=91.69  Aligned_cols=91  Identities=15%  Similarity=0.229  Sum_probs=68.4

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCC----ccE-EEEcCCC--CCcHHH-HHHHHCCCceec
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLS----VAQ-VVSVSSR--LGIKGH-RLAEQHNKFLVH  260 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~----vTH-lV~~~~~--~~t~K~-~~A~~~gi~IV~  260 (282)
                      +..+|.|+.++|+|.+..  +.+..+.++++.+||++..++...    .+| +|+...+  ....++ ..|.+.|+++|+
T Consensus       112 ~~~lF~g~~~~~~~~~~~--~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV~  189 (214)
T 1t15_A          112 DRKIFRGLEICCYGPFTN--MPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVT  189 (214)
T ss_dssp             TSCTTTTCEEEECSCCSS--SCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEE
T ss_pred             CCcccCCCEEEEEecCCC--CCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEEe
Confidence            467999999999886543  347889999999999999887652    234 5554211  112233 245667999999


Q ss_pred             HHHHHHHHHhCCcCCCCCCCC
Q 041003          261 PQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       261 ~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      ++||.+|+..++.+||++|.+
T Consensus       190 ~~Wi~dsi~~~~~l~~~~Y~l  210 (214)
T 1t15_A          190 REWVLDSVALYQCQELDTYLI  210 (214)
T ss_dssp             HHHHHHHHHHTSCCCSGGGBC
T ss_pred             ccHHHHhHhhcCcCCCcceee
Confidence            999999999999999999965

>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*

Probab=98.75  E-value=5.6e-09  Score=88.74  Aligned_cols=81  Identities=11%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             hheeeccee-EEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHH
Q 041003          189 QRQILVRCT-LFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAA  267 (282)
Q Consensus       189 r~~vl~G~~-i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c  267 (282)
                      +..+|.|+. +++++...   +.+..+..+++.+||++..++. .++.+|+.  ...      ++..++++|+|+||.+|
T Consensus       116 ~~~LF~g~~~~~v~~~~~---~~~~~L~~lI~~~GG~v~~~~~-~~~iiI~~--~~~------~~~~~~~~V~p~Wi~Ds  183 (199)
T 3u3z_A          116 RGTLFADQPVMFVSPASS---PPVAKLCELVHLCGGRVSQVPR-QASIVIGP--YSG------KKKATVKYLSEKWVLDS  183 (199)
T ss_dssp             CCCTTTTSCCEEECTTCS---SCHHHHHHHHHHTTCCBCSSGG-GCSEEESC--CCS------CCCTTCEEECHHHHHHH
T ss_pred             cchhhCCCeEEEECCCCC---CCHHHHHHHHHHcCCEEeccCC-CCEEEEeC--Cch------hccCCCcEEChhHHHHH
Confidence            568999996 55555322   3478899999999999999884 45565544  222      23568999999999999


Q ss_pred             HHhCCcCCCCCCCC
Q 041003          268 YYLWSRQVEKDYFP  281 (282)
Q Consensus       268 ~~~~~r~~E~~y~~  281 (282)
                      +..++.+|+++|.+
T Consensus       184 I~~~~llp~~~Y~~  197 (199)
T 3u3z_A          184 ITQHKVCAPENYLL  197 (199)
T ss_dssp             HHHTSCCCGGGGBC
T ss_pred             HHcCCcCChHhccC
Confidence            99999999999975

>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B

Probab=98.73  E-value=2e-08  Score=88.67  Aligned_cols=90  Identities=17%  Similarity=0.086  Sum_probs=68.8

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccC---------CCccEEEEcCCCCCcHHHHHHHHCCCcee
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYN---------LSVAQVVSVSSRLGIKGHRLAEQHNKFLV  259 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~---------~~vTHlV~~~~~~~t~K~~~A~~~gi~IV  259 (282)
                      +..+|.|+.|++++....+  ....+..+++.+||++...+.         ...+|+|.........+...|.++|++||
T Consensus       152 ~~~LF~G~~I~i~~~~~~~--~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~iV  229 (259)
T 1kzy_C          152 RENPFQNLKVLLVSDQQQN--FLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPVV  229 (259)
T ss_dssp             CCCTTTTCEEEEEESCTTT--THHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCEE
T ss_pred             cCCCCCCeEEEEecCCCCC--HHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCEe
Confidence            5689999999998875332  134556799999999876653         24677776632223466678888999999


Q ss_pred             cHHHHHHHHHhCCcCCCCCCC
Q 041003          260 HPQWIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       260 ~~~WL~~c~~~~~r~~E~~y~  280 (282)
                      +.+||.+|+..++.+|+..++
T Consensus       230 s~EWv~~sI~~~~ll~~~~hp  250 (259)
T 1kzy_C          230 SQEWVIQCLIVGERIGFKQHP  250 (259)
T ss_dssp             CHHHHHHHHHHTSCCCTTSSG
T ss_pred             cHHHHHHHHHhCCcCCCCcCc
Confidence            999999999999999998764

>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A

Probab=98.55  E-value=9.4e-08  Score=81.60  Aligned_cols=87  Identities=11%  Similarity=0.103  Sum_probs=68.3

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCc--cEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSV--AQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAA  267 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~v--THlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c  267 (282)
                      ..+|.|+.|++++...   +....+.++++..||++.....+..  +|+|.+. .....++..+.+.|+++|+++||.+|
T Consensus       113 ~~lF~g~~~~~~~~~~---~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~-~~d~~~~~~~~~~~i~vvs~eWi~~s  188 (209)
T 2etx_A          113 RRLLEGYEIYVTPGVQ---PPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITC-PQDFPHCSIPLRVGLPLLSPEFLLTG  188 (209)
T ss_dssp             SCTTTTCEEEECTTCS---SCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECC-GGGGGGCHHHHHHTCCEECTHHHHHH
T ss_pred             CCCcCCcEEEEeCCCC---CCHHHHHHHHHHCCCEEECCCCCCCCCceEEEEC-cccHHHHHHHHHCCCeEEcHHHHHHH
Confidence            4799999999987643   2367889999999999998876643  6887763 22344566677889999999999999


Q ss_pred             HHhCCcCCCCCCCC
Q 041003          268 YYLWSRQVEKDYFP  281 (282)
Q Consensus       268 ~~~~~r~~E~~y~~  281 (282)
                      +...+ ++++.|..
T Consensus       189 I~~q~-ld~e~y~l  201 (209)
T 2etx_A          189 VLKQE-AKPEAFVL  201 (209)
T ss_dssp             HHHTC-CCGGGGBC
T ss_pred             HHhcc-cChHHhee
Confidence            99855 69888853

>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A

Probab=98.50  E-value=6.8e-08  Score=82.33  Aligned_cols=84  Identities=7%  Similarity=-0.026  Sum_probs=62.9

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEeccc-------C----------------CCccEEEEcCCCCCcH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVY-------N----------------LSVAQVVSVSSRLGIK  246 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~-------~----------------~~vTHlV~~~~~~~t~  246 (282)
                      ..+|.|+.++++|.+..  +.+..+.++++..||++....       +                +.+||+|..  +++..
T Consensus       102 ~~lF~g~~~~l~~~~~~--~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~--~~~~~  177 (210)
T 2nte_A          102 PKLFDGCYFYLWGTFKH--HPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIY--EDLCN  177 (210)
T ss_dssp             CCTTTTCEEEECSCCSS--SCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEE--CSCSS
T ss_pred             ccccCceEEEEeccCCC--CCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEe--ccccc
Confidence            57999999999985432  357899999999999998521       1                357899887  43321


Q ss_pred             H-HHHHHHCCCceecHHHHHHHHHhCCcCCCC
Q 041003          247 G-HRLAEQHNKFLVHPQWIYAAYYLWSRQVEK  277 (282)
Q Consensus       247 K-~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~  277 (282)
                      . ...|.+.++++|+++||.+|+..++.+|.+
T Consensus       178 ~~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~  209 (210)
T 2nte_A          178 YHPERVRQGKVWKAPSSWFIDCVMSFELLPLD  209 (210)
T ss_dssp             CCCSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred             cCHHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence            1 112334578999999999999999999865

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=98.19  E-value=3.6e-06  Score=69.34  Aligned_cols=106  Identities=12%  Similarity=0.076  Sum_probs=69.1

Q ss_pred             cCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCC
Q 041003            8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTR   86 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~   86 (282)
                      .++..++++|+|+||+......-..                      . ..-.+.+.||+.++|+.+.+. |.++|.|++
T Consensus        11 ~~~~k~~~~D~Dgtl~~~~~~~~~~----------------------~-~~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~   67 (176)
T 2fpr_A           11 GSSQKYLFIDRDGTLISEPPSDFQV----------------------D-RFDKLAFEPGVIPQLLKLQKAGYKLVMITNQ   67 (176)
T ss_dssp             --CCEEEEECSBTTTBCCC--CCCC----------------------C-SGGGCCBCTTHHHHHHHHHHTTEEEEEEEEC
T ss_pred             CCcCcEEEEeCCCCeEcCCCCCcCc----------------------C-CHHHCcCCccHHHHHHHHHHCCCEEEEEECC
Confidence            4567889999999999874310000                      0 000135789999999999765 999999999


Q ss_pred             ---------------cHHHHHHHHhhhcCCCcccccccEE-E----ccCCCC------CceeccccccccCCceEEEcCC
Q 041003           87 ---------------IRSYAMMMAKLLNPKCEYHISSRLI-T----REDFKE------KGKKSGDLVLRQEWGVVIVDDT  140 (282)
Q Consensus        87 ---------------~~~Ya~~v~~~ldp~~~~f~~~rv~-~----r~~~~~------~~~KdL~~l~~~~~~vvivDd~  140 (282)
                                     .+.++..+++.++-.   |  +.++ +    .+++..      .+.+-++.++-+++++++|+|+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---f--d~v~~s~~~~~~~~~~~KP~p~~~~~~~~~~gi~~~~~l~VGD~  142 (176)
T 2fpr_A           68 DGLGTQSFPQADFDGPHNLMMQIFTSQGVQ---F--DEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIGDR  142 (176)
T ss_dssp             TTTTBTTBCHHHHHHHHHHHHHHHHHTTCC---E--EEEEEECCCGGGCCSSSTTSCGGGGGGC----CCGGGCEEEESS
T ss_pred             ccccccccchHhhhhhHHHHHHHHHHcCCC---e--eEEEEcCCCCcccccccCCCHHHHHHHHHHcCCCHHHEEEEcCC
Confidence                           688888898887654   6  4554 4    244331      1223344555578899999999


Q ss_pred             h
Q 041003          141 E  141 (282)
Q Consensus       141 ~  141 (282)
                      +
T Consensus       143 ~  143 (176)
T 2fpr_A          143 A  143 (176)
T ss_dssp             H
T ss_pred             H
Confidence            8

>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*

Probab=98.15  E-value=2.7e-07  Score=91.09  Aligned_cols=77  Identities=14%  Similarity=0.039  Sum_probs=0.0

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      ..+|.|.+++|||.++.   ++..+..+++.+||+++.++++++++||++  ...+.|..+|.+.||+|++.+|+.+.+.
T Consensus       585 ~~~l~G~~~v~TG~l~~---~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G--~~~gsKl~KA~~lgI~Ii~E~~f~~~l~  659 (667)
T 1dgs_A          585 SDLLSGLTFVLTGELSR---PREEVKALLGRLGAKVTDSVSRKTSYLVVG--ENPGSKLEKARALGVAVLTEEEFWRFLK  659 (667)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccCCCEEEEeCCCCC---CHHHHHHHHHHcCCEEcCcccCCeeEEEEC--CCCChHHHHHHHCCCeEEeHHHHHHHHh
Confidence            45799999999999875   378899999999999999999999999999  5556899999999999999999999886


Q ss_pred             hC
Q 041003          270 LW  271 (282)
Q Consensus       270 ~~  271 (282)
                      ..
T Consensus       660 ~~  661 (667)
T 1dgs_A          660 EK  661 (667)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=98.12  E-value=2.2e-06  Score=70.93  Aligned_cols=122  Identities=15%  Similarity=-0.033  Sum_probs=73.3

Q ss_pred             CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCc
Q 041003            9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRI   87 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~   87 (282)
                      .+...+++||||||+........+++...       .... .  ......-.+...||+.++|+.+.+. +.++|.|++.
T Consensus        25 ~~~k~vifDlDGTL~~~~~~~~~~~~~~~-------~~~~-~--~~~~~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~   94 (187)
T 2wm8_A           25 RLPKLAVFDLDYTLWPFWVDTHVDPPFHK-------SSDG-T--VRDRRGQDVRLYPEVPEVLKRLQSLGVPGAAASRTS   94 (187)
T ss_dssp             TSCSEEEECSBTTTBSSCTTTSSCSCCEE-------CTTS-C--EECTTCCEECCCTTHHHHHHHHHHHTCCEEEEECCS
T ss_pred             hccCEEEEcCCCCcchHHHhhccCcchhh-------hccc-c--hhhccCcccCcchhHHHHHHHHHHCCceEEEEeCCC
Confidence            34568899999999754322111111000       0000 0  0011112356899999999999764 9999999999


Q ss_pred             -HHHHHHHHhhhcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcCChhh
Q 041003           88 -RSYAMMMAKLLNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDDTEKV  143 (282)
Q Consensus        88 -~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd~~~~  143 (282)
                       +.++..+++.++-.. +|  +.++....... .+.+-++.++-+.+++++|+|++.-
T Consensus        95 ~~~~~~~~l~~~gl~~-~f--~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~igD~~~D  149 (187)
T 2wm8_A           95 EIEGANQLLELFDLFR-YF--VHREIYPGSKITHFERLQQKTGIPFSQMIFFDDERRN  149 (187)
T ss_dssp             CHHHHHHHHHHTTCTT-TE--EEEEESSSCHHHHHHHHHHHHCCCGGGEEEEESCHHH
T ss_pred             ChHHHHHHHHHcCcHh-hc--ceeEEEeCchHHHHHHHHHHcCCChHHEEEEeCCccC
Confidence             799999999987654 45  33322211100 1222334455578899999999743

>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}

Probab=98.11  E-value=3.7e-07  Score=90.08  Aligned_cols=76  Identities=12%  Similarity=-0.012  Sum_probs=0.0

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      ..+|.|.+++|||.++.-  ++..+..+++.+||+++.++++++++||++  ...+.|..+|.+.||+|++.+|+.+.+.
T Consensus       595 ~~~l~G~~~v~TG~l~~~--~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G--~~~gsKl~KA~~lgI~Ii~E~~f~~~l~  670 (671)
T 2owo_A          595 DSPFAGKTVVLTGSLSQM--SRDDAKARLVELGAKVAGSVSKKTDLVIAG--EAAGSKLAKAQELGIEVIDEAEMLRLLG  670 (671)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcccCcEEEEcCCCCCC--CHHHHHHHHHHcCCEEeCcccCceeEEEEC--CCCChHHHHHHHCCCcEEcHHHHHHHhc
Confidence            457999999999998653  478899999999999999999999999999  5566899999999999999999988753

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=98.09  E-value=9.4e-07  Score=68.41  Aligned_cols=79  Identities=13%  Similarity=0.076  Sum_probs=57.2

Q ss_pred             ecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC--CC----ceeccccccccCCceE
Q 041003           63 VRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK--EK----GKKSGDLVLRQEWGVV  135 (282)
Q Consensus        63 ~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~--~~----~~KdL~~l~~~~~~vv  135 (282)
                      ..||+.++|+.+.+. +.++|.|++...++..+++.++-.. +|  +.+++.+++.  ++    +.+-++.++-+.++++
T Consensus        19 ~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~   95 (137)
T 2pr7_A           19 DQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETNG-VV--DKVLLSGELGVEKPEEAAFQAAADAIDLPMRDCV   95 (137)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHTT-SS--SEEEEHHHHSCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             cCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChHh-hc--cEEEEeccCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence            468999999999865 9999999999999999998875443 46  5566655432  11    2222344455778999


Q ss_pred             EEcCChhhh
Q 041003          136 IVDDTEKVW  144 (282)
Q Consensus       136 ivDd~~~~~  144 (282)
                      +|+|++.-.
T Consensus        96 ~vgD~~~di  104 (137)
T 2pr7_A           96 LVDDSILNV  104 (137)
T ss_dssp             EEESCHHHH
T ss_pred             EEcCCHHHH
Confidence            999998544

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=98.05  E-value=4e-06  Score=69.55  Aligned_cols=106  Identities=13%  Similarity=0.099  Sum_probs=72.4

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcH--
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIR--   88 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~--   88 (282)
                      ..+++|+|+||+......-.. .   +.               . ..-.+...||+.++|+.+.+. +.++|.|++..  
T Consensus         4 k~vifD~DgtL~~~~~~~y~~-~---~~---------------~-~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~   63 (189)
T 3ib6_A            4 THVIWDMGETLNTVPNTRYDH-H---PL---------------D-TYPEVVLRKNAKETLEKVKQLGFKQAILSNTATSD   63 (189)
T ss_dssp             CEEEECTBTTTBCCCTTSSCS-S---CG---------------G-GCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCC
T ss_pred             eEEEEcCCCceeeccchhhhh-H---HH---------------h-ccCCceeCcCHHHHHHHHHHCCCEEEEEECCCccc
Confidence            478999999998843211000 0   00               0 000145889999999999765 99999999887  


Q ss_pred             -HHHHHHHhhhcCCCcccccccEEEccCC----C--C----CceeccccccccCCceEEEcCC
Q 041003           89 -SYAMMMAKLLNPKCEYHISSRLITREDF----K--E----KGKKSGDLVLRQEWGVVIVDDT  140 (282)
Q Consensus        89 -~Ya~~v~~~ldp~~~~f~~~rv~~r~~~----~--~----~~~KdL~~l~~~~~~vvivDd~  140 (282)
                       .++..+++.+.-.. +|  +.+++.++.    .  +    .+.+-+++++-+.+++++|+|+
T Consensus        64 ~~~~~~~l~~~gl~~-~f--d~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~VGD~  123 (189)
T 3ib6_A           64 TEVIKRVLTNFGIID-YF--DFIYASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNT  123 (189)
T ss_dssp             HHHHHHHHHHTTCGG-GE--EEEEECCTTSSTTCCCTTSHHHHHHHHHHHTCCGGGEEEEESB
T ss_pred             hHHHHHHHHhcCchh-he--EEEEEccccccccCCCCcCHHHHHHHHHHcCCCcccEEEECCC
Confidence             89999998887654 67  667777653    1  1    1223344455678999999999

>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*

Probab=98.02  E-value=6e-06  Score=71.97  Aligned_cols=81  Identities=17%  Similarity=0.154  Sum_probs=59.1

Q ss_pred             hheeecceeEEeeccCCCC--------c--cchhHHHHHHHHhCCeE--ecccCCCccEEEEcCCCCCcHHHHHHHHCCC
Q 041003          189 QRQILVRCTLFFSRDVDDK--------E--FEFPLLKWRAGELGAAC--TDVYNLSVAQVVSVSSRLGIKGHRLAEQHNK  256 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~--------~--~~~~~l~~~~~~~Ga~v--~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi  256 (282)
                      |..+|.|++|++.+-....        +  +.......+++.+||++  .++++...+|+|...  .+.    .|.+.++
T Consensus       148 ~~~Lf~g~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~--~~~----~~~~~~~  221 (241)
T 2vxb_A          148 RKGPLFGKKILFIIPEAKSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTM--DGN----IVDETNC  221 (241)
T ss_dssp             CCCTTTTCEEEECCCC------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECS--SSC----CCSSCSS
T ss_pred             cCcCCCCcEEEEEeCCCcccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEEC--Ccc----ccccCCC
Confidence            5789999999986431110        0  01255677999999999  555666788999873  222    1556799


Q ss_pred             ceecHHHHHHHHHhCCcCC
Q 041003          257 FLVHPQWIYAAYYLWSRQV  275 (282)
Q Consensus       257 ~IV~~~WL~~c~~~~~r~~  275 (282)
                      +||+++|+.+|+..++++|
T Consensus       222 ~iV~~eWv~~~i~~g~~l~  240 (241)
T 2vxb_A          222 PVVDPEWIVECLISQSDIS  240 (241)
T ss_dssp             CEECHHHHHHHHHHTSCTT
T ss_pred             CEecHHHHHHHHHhceecC
Confidence            9999999999999999886

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=97.99  E-value=9.6e-06  Score=66.11  Aligned_cols=101  Identities=10%  Similarity=0.002  Sum_probs=67.3

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcH--
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIR--   88 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~--   88 (282)
                      ..+++|+||||+.....-... .                        -.+...||+.++|+.+.+. +.++|.|++..  
T Consensus         2 k~v~~D~DGtL~~~~~~~~~~-~------------------------~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~   56 (179)
T 3l8h_A            2 KLIILDRDGVVNQDSDAFVKS-P------------------------DEWIALPGSLQAIARLTQADWTVVLATNQSGLA   56 (179)
T ss_dssp             CEEEECSBTTTBCCCTTCCCS-G------------------------GGCCBCTTHHHHHHHHHHTTCEEEEEEECTTTT
T ss_pred             CEEEEcCCCccccCCCccCCC-H------------------------HHceECcCHHHHHHHHHHCCCEEEEEECCCccc
Confidence            368999999999864211000 0                        0134789999999999765 99999999987  


Q ss_pred             -------------HHHHHHHhhhcCCCcccccccEEE-----ccCCCC------CceeccccccccCCceEEEcCChh
Q 041003           89 -------------SYAMMMAKLLNPKCEYHISSRLIT-----REDFKE------KGKKSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        89 -------------~Ya~~v~~~ldp~~~~f~~~rv~~-----r~~~~~------~~~KdL~~l~~~~~~vvivDd~~~  142 (282)
                                   .++..+++.+.   .+|  +.+++     .+++..      .+.+-++.++-+++++++|+|+..
T Consensus        57 ~~~~~~~~~~~~~~~~~~~l~~~g---~~~--~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vGD~~~  129 (179)
T 3l8h_A           57 RGLFDTATLNAIHDKMHRALAQMG---GVV--DAIFMCPHGPDDGCACRKPLPGMYRDIARRYDVDLAGVPAVGDSLR  129 (179)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHHHTT---CCC--CEEEEECCCTTSCCSSSTTSSHHHHHHHHHHTCCCTTCEEEESSHH
T ss_pred             cCcCCHHHHHHHHHHHHHHHHhCC---Cce--eEEEEcCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHEEEECCCHH
Confidence                         67777777776   334  33443     233321      122334445568899999999873

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=97.98  E-value=2.1e-05  Score=66.14  Aligned_cols=80  Identities=9%  Similarity=-0.015  Sum_probs=60.4

Q ss_pred             EEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      .....|++.++|+.+.+. +.++|+|++.+.++..+++.+.-.. +|  +.+++.++...      .+.+=++.++-+.+
T Consensus       101 ~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f--~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~  177 (231)
T 3kzx_A          101 NFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLTH-YF--DSIIGSGDTGTIKPSPEPVLAALTNINIEPS  177 (231)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGG-GC--SEEEEETSSSCCTTSSHHHHHHHHHHTCCCS
T ss_pred             cceECcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCchh-he--eeEEcccccCCCCCChHHHHHHHHHcCCCcc
Confidence            357899999999999865 9999999999999999999876543 56  56677666542      11223344555677


Q ss_pred             -ceEEEcCChh
Q 041003          133 -GVVIVDDTEK  142 (282)
Q Consensus       133 -~vvivDd~~~  142 (282)
                       ++++|+|++.
T Consensus       178 ~~~v~vGD~~~  188 (231)
T 3kzx_A          178 KEVFFIGDSIS  188 (231)
T ss_dssp             TTEEEEESSHH
T ss_pred             cCEEEEcCCHH
Confidence             8999999984

>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}

Probab=97.97  E-value=1.6e-05  Score=68.26  Aligned_cols=85  Identities=6%  Similarity=-0.032  Sum_probs=64.3

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCC-------------ccEEEEcCCCCCcHHHHHHHHCC
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLS-------------VAQVVSVSSRLGIKGHRLAEQHN  255 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~-------------vTHlV~~~~~~~t~K~~~A~~~g  255 (282)
                      +..+|.|+.+++++.+.   +....+.++++..||++.....+.             -..||+.  +.....+..+.+.|
T Consensus       119 ~~~LF~G~~f~it~~~~---~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~--~~d~~~~~~~~~~~  193 (219)
T 3sqd_A          119 VSPLFKAKYFYITPGIC---PSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISC--ENDLHLCREYFARG  193 (219)
T ss_dssp             HSCTTTTEEEEECTTCS---SCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEEC--GGGGGGGHHHHHTT
T ss_pred             cccccCCcEEEEeCCCC---CCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEec--ccHHHHHHHHHHCC
Confidence            57899999999998654   337789999999999999886431             2334444  44566677788889


Q ss_pred             CceecHHHHHHHHHhCCcCCCCCC
Q 041003          256 KFLVHPQWIYAAYYLWSRQVEKDY  279 (282)
Q Consensus       256 i~IV~~~WL~~c~~~~~r~~E~~y  279 (282)
                      ++|++++||.+|+-+.+ ++=+.|
T Consensus       194 ~~v~s~E~il~~Il~q~-ld~~~~  216 (219)
T 3sqd_A          194 IDVHNAEFVLTGVLTQT-LDYESY  216 (219)
T ss_dssp             CCCEETHHHHHHHHHTC-CCTTTS
T ss_pred             CcEEeHHHHHHHHHhee-ecchhc
Confidence            99999999999999554 454444

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=97.96  E-value=4.4e-06  Score=69.79  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=63.1

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      .+..||+.++|+.+. ..+.+.|.|++.+.++..+++.++-.. +|  +.+++.++...      .+.+-+++++-++++
T Consensus        83 ~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~~-~f--d~~~~~~~~~~~KP~p~~~~~a~~~lg~~p~e  159 (216)
T 3kbb_A           83 LKENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLEK-YF--DVMVFGDQVKNGKPDPEIYLLVLERLNVVPEK  159 (216)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG-GC--SEEECGGGSSSCTTSTHHHHHHHHHHTCCGGG
T ss_pred             cccCccHHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCCc-cc--cccccccccCCCcccHHHHHHHHHhhCCCccc
Confidence            567899999999995 569999999999999999999987664 67  66677766542      234455666778899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|++.
T Consensus       160 ~l~VgDs~~  168 (216)
T 3kbb_A          160 VVVFEDSKS  168 (216)
T ss_dssp             EEEEECSHH
T ss_pred             eEEEecCHH
Confidence            999999974

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=97.93  E-value=2.9e-05  Score=64.29  Aligned_cols=83  Identities=11%  Similarity=0.032  Sum_probs=60.7

Q ss_pred             EEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-----CceeccccccccCC
Q 041003           59 FLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-----KGKKSGDLVLRQEW  132 (282)
Q Consensus        59 ~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-----~~~KdL~~l~~~~~  132 (282)
                      ......||+.++|+.+.+. +.++|.|++...++..+++.+.-.. +|....+++.+....     .+.+=++.++-+.+
T Consensus        67 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f~~~~i~~~~~~~~kp~~~~~~~~~~~~g~~~~  145 (205)
T 3m9l_A           67 QGSRPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLAD-CFAEADVLGRDEAPPKPHPGGLLKLAEAWDVSPS  145 (205)
T ss_dssp             EEEEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG-GSCGGGEECTTTSCCTTSSHHHHHHHHHTTCCGG
T ss_pred             hcCCCCccHHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCchh-hcCcceEEeCCCCCCCCCHHHHHHHHHHcCCCHH
Confidence            4578899999999999865 9999999999999999999886543 451145666654221     11223344555789


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      ++++|+|+..
T Consensus       146 ~~i~iGD~~~  155 (205)
T 3m9l_A          146 RMVMVGDYRF  155 (205)
T ss_dssp             GEEEEESSHH
T ss_pred             HEEEECCCHH
Confidence            9999999984

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=97.83  E-value=7.9e-06  Score=67.77  Aligned_cols=81  Identities=6%  Similarity=-0.011  Sum_probs=59.0

Q ss_pred             EEEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhh------cCCCcccccccEEEccCCCC--C----ceeccccc
Q 041003           60 LVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLL------NPKCEYHISSRLITREDFKE--K----GKKSGDLV  127 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~l------dp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l  127 (282)
                      .+...|++.++|+.+.+.+.++|.|++.+.++..+++.+      +- ..+|  +.+++.+++..  +    +.+=++.+
T Consensus        87 ~~~~~~~~~~~l~~l~~g~~~~i~t~~~~~~~~~~~~~l~~~~~~~l-~~~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~  163 (211)
T 2i6x_A           87 LEEISAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSPRFLPSGRTL-DSFF--DKVYASCQMGKYKPNEDIFLEMIADS  163 (211)
T ss_dssp             EEEECHHHHHHHHHHTTTSEEEEEECCCHHHHHHHTSTTSSTTCCCG-GGGS--SEEEEHHHHTCCTTSHHHHHHHHHHH
T ss_pred             hcccChHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHhhhccccccCH-HHHc--CeEEeecccCCCCCCHHHHHHHHHHh
Confidence            567899999999999888999999999999998888763      22 2356  55666654432  1    12223445


Q ss_pred             cccCCceEEEcCChhh
Q 041003          128 LRQEWGVVIVDDTEKV  143 (282)
Q Consensus       128 ~~~~~~vvivDd~~~~  143 (282)
                      +-+++++++|+|++.-
T Consensus       164 ~~~~~~~~~igD~~~D  179 (211)
T 2i6x_A          164 GMKPEETLFIDDGPAN  179 (211)
T ss_dssp             CCCGGGEEEECSCHHH
T ss_pred             CCChHHeEEeCCCHHH
Confidence            5578999999999853

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=97.81  E-value=6e-06  Score=69.82  Aligned_cols=79  Identities=16%  Similarity=0.121  Sum_probs=58.9

Q ss_pred             EecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhh---cCCC--cccccccEEEccCCCC--C----ceecccccccc
Q 041003           62 KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLL---NPKC--EYHISSRLITREDFKE--K----GKKSGDLVLRQ  130 (282)
Q Consensus        62 ~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~l---dp~~--~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~  130 (282)
                      ...||+.++|+.+.+.+.++|.|++.+.++..+.+.|   ...+  .+|  +.+++.+++..  +    +.+-++.++-+
T Consensus       112 ~~~~~~~~~l~~l~~~~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~f--d~i~~~~~~~~~KP~~~~~~~~~~~~g~~  189 (229)
T 4dcc_A          112 DIPTYKLDLLLKLREKYVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYF--EKTYLSYEMKMAKPEPEIFKAVTEDAGID  189 (229)
T ss_dssp             CCCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHTSCBTTBCHHHHC--SEEEEHHHHTCCTTCHHHHHHHHHHHTCC
T ss_pred             hccHHHHHHHHHHHhcCcEEEEECCChHHHHHHHhhhhhhccCCHHHhC--CEEEeecccCCCCCCHHHHHHHHHHcCCC
Confidence            3579999999999877999999999999999888777   4433  256  56676665432  1    22334455668


Q ss_pred             CCceEEEcCChh
Q 041003          131 EWGVVIVDDTEK  142 (282)
Q Consensus       131 ~~~vvivDd~~~  142 (282)
                      ++++++|+|++.
T Consensus       190 ~~~~~~vGD~~~  201 (229)
T 4dcc_A          190 PKETFFIDDSEI  201 (229)
T ss_dssp             GGGEEEECSCHH
T ss_pred             HHHeEEECCCHH
Confidence            899999999983

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=97.76  E-value=0.00011  Score=61.15  Aligned_cols=78  Identities=9%  Similarity=0.003  Sum_probs=59.7

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      ....|++.++|+.+.+. +.++|.|++.+.++..+++.+.-.. +|  +.+++.+++..      .+.+=++.++-++++
T Consensus        95 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~  171 (230)
T 3um9_A           95 LTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLTN-SF--DHLISVDEVRLFKPHQKVYELAMDTLHLGESE  171 (230)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCGG-GC--SEEEEGGGTTCCTTCHHHHHHHHHHHTCCGGG
T ss_pred             CCCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCChh-hc--ceeEehhhcccCCCChHHHHHHHHHhCCCccc
Confidence            45789999999999866 9999999999999999999876443 56  56777766542      122233445557899


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|+.
T Consensus       172 ~~~iGD~~  179 (230)
T 3um9_A          172 ILFVSCNS  179 (230)
T ss_dssp             EEEEESCH
T ss_pred             EEEEeCCH
Confidence            99999997

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=97.75  E-value=4.4e-05  Score=64.40  Aligned_cols=104  Identities=9%  Similarity=-0.027  Sum_probs=67.4

Q ss_pred             cCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCC
Q 041003            8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTR   86 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~   86 (282)
                      ..+...+++|+||||+......  ...                    .    .+...||+.++|+.+.+ -+.++|.|++
T Consensus        22 ~~~~k~v~~D~DGTL~~~~~~~--~~~--------------------~----~~~~~pg~~e~L~~L~~~G~~~~ivTn~   75 (211)
T 2gmw_A           22 AKSVPAIFLDRDGTINVDHGYV--HEI--------------------D----NFEFIDGVIDAMRELKKMGFALVVVTNQ   75 (211)
T ss_dssp             --CBCEEEECSBTTTBCCCSSC--CSG--------------------G----GCCBCTTHHHHHHHHHHTTCEEEEEEEC
T ss_pred             hhcCCEEEEcCCCCeECCCCcc--cCc--------------------c----cCcCCcCHHHHHHHHHHCCCeEEEEECc
Confidence            3345589999999999764211  100                    0    13467999999999976 5999999999


Q ss_pred             c---------------HHHHHHHHhhhcCCCcccccccEEEcc-----------CCC--C----CceeccccccccCCce
Q 041003           87 I---------------RSYAMMMAKLLNPKCEYHISSRLITRE-----------DFK--E----KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        87 ~---------------~~Ya~~v~~~ldp~~~~f~~~rv~~r~-----------~~~--~----~~~KdL~~l~~~~~~v  134 (282)
                      .               ..++..+++.++-.   | ..-+++.+           ++.  +    .+.+-++.++-+.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~---f-~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~lgi~~~~~  151 (211)
T 2gmw_A           76 SGIARGKFTEAQFETLTEWMDWSLADRDVD---L-DGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAAS  151 (211)
T ss_dssp             THHHHTSSCHHHHHHHHHHHHHHHHHTTCC---C-SEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHHHHHTBCGGGC
T ss_pred             CCcCCCccCHHHHHHHHHHHHHHHHHcCCc---e-EEEEECCcCCCCcccccCccCcCCCCCHHHHHHHHHHcCCCHHHE
Confidence            9               58888888887654   4 22222322           222  1    1122234445578899


Q ss_pred             EEEcCCh
Q 041003          135 VIVDDTE  141 (282)
Q Consensus       135 vivDd~~  141 (282)
                      ++|+|+.
T Consensus       152 ~~VGD~~  158 (211)
T 2gmw_A          152 YMVGDKL  158 (211)
T ss_dssp             EEEESSH
T ss_pred             EEEcCCH
Confidence            9999998

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=97.74  E-value=3.2e-05  Score=65.41  Aligned_cols=79  Identities=14%  Similarity=0.118  Sum_probs=60.8

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCC------ceecccccccc-CC
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEK------GKKSGDLVLRQ-EW  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~------~~KdL~~l~~~-~~  132 (282)
                      ...+||+.++|+.+.+. +.++|.|++.+.++..+++.++-.. +|  +.+++.+++...      +.+=++.++-+ ++
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~  185 (240)
T 3sd7_A          109 NKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDIDR-YF--KYIAGSNLDGTRVNKNEVIQYVLDLCNVKDKD  185 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCGG-GC--SEEEEECTTSCCCCHHHHHHHHHHHHTCCCGG
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcHh-hE--EEEEeccccCCCCCCHHHHHHHHHHcCCCCCC
Confidence            56899999999999876 9999999999999999999886554 56  566777765431      12223344556 89


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      ++++|+|++.
T Consensus       186 ~~i~vGD~~~  195 (240)
T 3sd7_A          186 KVIMVGDRKY  195 (240)
T ss_dssp             GEEEEESSHH
T ss_pred             cEEEECCCHH
Confidence            9999999983

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=97.72  E-value=1.3e-05  Score=67.44  Aligned_cols=78  Identities=5%  Similarity=-0.015  Sum_probs=58.7

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+ .+.++|.|++.+.++..+++.++-.. +|  +.+++.+++..  +    +.+=++.++-++++
T Consensus        94 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  170 (232)
T 1zrn_A           94 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRD-GF--DHLLSVDPVQVYKPDNRVYELAEQALGLDRSA  170 (232)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEESGGGTCCTTSHHHHHHHHHHHTSCGGG
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChHh-hh--heEEEecccCCCCCCHHHHHHHHHHcCCCccc
Confidence            4678999999999976 49999999999999999999876543 56  56677665432  1    12223445557889


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|++
T Consensus       171 ~~~iGD~~  178 (232)
T 1zrn_A          171 ILFVASNA  178 (232)
T ss_dssp             EEEEESCH
T ss_pred             EEEEeCCH
Confidence            99999997

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=97.67  E-value=2.1e-05  Score=67.66  Aligned_cols=80  Identities=11%  Similarity=-0.083  Sum_probs=59.9

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccC-C
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQE-W  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~-~  132 (282)
                      +...||+.++|+.+.+. +.++|.|++.+.++..+++.+.-.+..|  +.+++.++...      .+.+=++.++-+. +
T Consensus       110 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~  187 (277)
T 3iru_A          110 SQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTP--ASTVFATDVVRGRPFPDMALKVALELEVGHVN  187 (277)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTTCCC--SEEECGGGSSSCTTSSHHHHHHHHHHTCSCGG
T ss_pred             CccCcCHHHHHHHHHHcCCeEEEEeCCchHHHHHHHHhcCcccCCC--ceEecHHhcCCCCCCHHHHHHHHHHcCCCCCc
Confidence            46789999999999865 9999999999999999999876444325  66676666542      1222334455677 9


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      ++++|+|+..
T Consensus       188 ~~i~vGD~~~  197 (277)
T 3iru_A          188 GCIKVDDTLP  197 (277)
T ss_dssp             GEEEEESSHH
T ss_pred             cEEEEcCCHH
Confidence            9999999973

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=97.65  E-value=3.1e-05  Score=64.24  Aligned_cols=79  Identities=10%  Similarity=0.031  Sum_probs=57.0

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccC-----------CCC-----Cceec
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED-----------FKE-----KGKKS  123 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~-----------~~~-----~~~Kd  123 (282)
                      +..+||+.++|+.+.+. +.++|.|++.+.++..+++.+.-.. +|  +.+++.++           +..     .+.+-
T Consensus        74 ~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~-~f--~~~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~  150 (217)
T 3m1y_A           74 LPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDA-AF--SNTLIVENDALNGLVTGHMMFSHSKGEMLLVL  150 (217)
T ss_dssp             CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSE-EE--EEEEEEETTEEEEEEEESCCSTTHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcch-hc--cceeEEeCCEEEeeeccCCCCCCChHHHHHHH
Confidence            56899999999999876 9999999999999999999986554 56  33433222           211     11122


Q ss_pred             cccccccCCceEEEcCChh
Q 041003          124 GDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus       124 L~~l~~~~~~vvivDd~~~  142 (282)
                      ++.++-++++++.|+|++.
T Consensus       151 ~~~~g~~~~~~i~vGDs~~  169 (217)
T 3m1y_A          151 QRLLNISKTNTLVVGDGAN  169 (217)
T ss_dssp             HHHHTCCSTTEEEEECSGG
T ss_pred             HHHcCCCHhHEEEEeCCHH
Confidence            3334557889999999974

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.64  E-value=8.5e-05  Score=69.57  Aligned_cols=108  Identities=15%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             hcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcC
Q 041003            7 YRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTT   85 (282)
Q Consensus         7 ~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~   85 (282)
                      ...+...+++|+||||+.+.......           ..           ..-+..+-||+.++|+.|.+ -|.++|.|+
T Consensus        54 ~~~~~k~v~fD~DGTL~~~~~~~~~~-----------~~-----------~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN  111 (416)
T 3zvl_A           54 VKPQGKVAAFDLDGTLITTRSGKVFP-----------TS-----------PSDWRILYPEIPKKLQELAAEGYKLVIFTN  111 (416)
T ss_dssp             CCCCSSEEEECSBTTTEECSSCSSSC-----------SS-----------TTCCEESCTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCeEEEEeCCCCccccCCCccCC-----------CC-----------HHHhhhhcccHHHHHHHHHHCCCeEEEEeC
Confidence            34456689999999999774321000           00           00123367999999999976 599999999


Q ss_pred             Cc------------HHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceecccccc----ccCCceEEEcCCh
Q 041003           86 RI------------RSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVL----RQEWGVVIVDDTE  141 (282)
Q Consensus        86 ~~------------~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~----~~~~~vvivDd~~  141 (282)
                      +.            +.++..+++.++-.   |  +.+++.++|..      .+.+-++.++    -+++++++|.|+.
T Consensus       112 ~~gi~~g~~~~~~~~~~~~~~l~~lgl~---f--d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~v~~~~~l~VGDs~  184 (416)
T 3zvl_A          112 QMGIGRGKLPAEVFKGKVEAVLEKLGVP---F--QVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAA  184 (416)
T ss_dssp             CHHHHTTSSCHHHHHHHHHHHHHHHTSC---C--EEEEECSSSTTSTTSSHHHHHHHHHSSTTCCCCGGGCEEECSCS
T ss_pred             CccccCCCCCHHHHHHHHHHHHHHcCCC---E--EEEEECCCCCCCCCCHHHHHHHHHHhCCCCCCCHHHeEEEECCC
Confidence            66            34477788777543   6  56777777653      1233344454    4788999999996

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=97.64  E-value=6.4e-05  Score=63.62  Aligned_cols=78  Identities=12%  Similarity=0.004  Sum_probs=58.8

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+ .+.++|.|++.+.++..+++.++-.. +|  +.+++.++...  +    +.+=++.++-++++
T Consensus       104 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  180 (240)
T 2no4_A          104 LSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDR-VL--DSCLSADDLKIYKPDPRIYQFACDRLGVNPNE  180 (240)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEEGGGTTCCTTSHHHHHHHHHHHTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcHH-Hc--CEEEEccccCCCCCCHHHHHHHHHHcCCCccc
Confidence            4577999999999976 49999999999999999999876543 56  56777766532  1    12223445567889


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|++
T Consensus       181 ~~~iGD~~  188 (240)
T 2no4_A          181 VCFVSSNA  188 (240)
T ss_dssp             EEEEESCH
T ss_pred             EEEEeCCH
Confidence            99999987

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=97.63  E-value=4.2e-05  Score=64.05  Aligned_cols=72  Identities=8%  Similarity=-0.060  Sum_probs=51.6

Q ss_pred             EecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceecccccccc-CCc
Q 041003           62 KVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQ-EWG  133 (282)
Q Consensus        62 ~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~-~~~  133 (282)
                      ...||+.++|+.+.+ .+.+.|-|+..+..+..+.+      .+|  +.+++.++...      .+.+-+++++-. .+.
T Consensus        36 ~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~~------~~~--d~v~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~  107 (196)
T 2oda_A           36 QLTPGAQNALKALRDQGMPCAWIDELPEALSTPLAA------PVN--DWMIAAPRPTAGWPQPDACWMALMALNVSQLEG  107 (196)
T ss_dssp             SBCTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHHT------TTT--TTCEECCCCSSCTTSTHHHHHHHHHTTCSCSTT
T ss_pred             CcCcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhcC------ccC--CEEEECCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence            467999999999975 59999999999988855443      245  56677776532      123344455544 478


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|.|++
T Consensus       108 ~v~VGDs~  115 (196)
T 2oda_A          108 CVLISGDP  115 (196)
T ss_dssp             CEEEESCH
T ss_pred             EEEEeCCH
Confidence            99999997

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=97.63  E-value=4.2e-05  Score=63.75  Aligned_cols=79  Identities=10%  Similarity=0.125  Sum_probs=60.1

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+. +.++|.|++.+.++..+++.+.-.. +|  +.+++.++...      .+.+=++.++-++++
T Consensus        85 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~  161 (226)
T 3mc1_A           85 NKVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAF-YF--DAIVGSSLDGKLSTKEDVIRYAMESLNIKSDD  161 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGG-GC--SEEEEECTTSSSCSHHHHHHHHHHHHTCCGGG
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHh-he--eeeeccCCCCCCCCCHHHHHHHHHHhCcCccc
Confidence            46889999999999865 9999999999999999999876543 56  56677766542      122233445557789


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|+..
T Consensus       162 ~i~iGD~~~  170 (226)
T 3mc1_A          162 AIMIGDREY  170 (226)
T ss_dssp             EEEEESSHH
T ss_pred             EEEECCCHH
Confidence            999999983

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=97.58  E-value=3e-05  Score=66.50  Aligned_cols=77  Identities=5%  Similarity=-0.066  Sum_probs=59.1

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~v  134 (282)
                      +...||+.++|+.+. .+.++|.|++.+.++..+++.++-.. +|  +.+++.+++..  +    +.+=++.++-+++++
T Consensus        92 ~~~~~~~~~~l~~l~-g~~~~i~t~~~~~~~~~~l~~~gl~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  167 (253)
T 1qq5_A           92 LTPYPDAAQCLAELA-PLKRAILSNGAPDMLQALVANAGLTD-SF--DAVISVDAKRVFKPHPDSYALVEEVLGVTPAEV  167 (253)
T ss_dssp             CCBCTTHHHHHHHHT-TSEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGE
T ss_pred             CCCCccHHHHHHHHc-CCCEEEEeCcCHHHHHHHHHHCCchh-hc--cEEEEccccCCCCCCHHHHHHHHHHcCCCHHHE
Confidence            467899999999999 99999999999999999999876433 56  56777766532  1    222334455678899


Q ss_pred             EEEcCCh
Q 041003          135 VIVDDTE  141 (282)
Q Consensus       135 vivDd~~  141 (282)
                      ++|+|++
T Consensus       168 ~~vGD~~  174 (253)
T 1qq5_A          168 LFVSSNG  174 (253)
T ss_dssp             EEEESCH
T ss_pred             EEEeCCh
Confidence            9999997

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=97.56  E-value=7.7e-05  Score=59.76  Aligned_cols=101  Identities=13%  Similarity=-0.023  Sum_probs=67.8

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~   89 (282)
                      ...+++|+||||+.+...  ..                      ......-...|+..++|+.+.+. +.++|.|++...
T Consensus         9 ~k~v~~DlDGTL~~~~~~--~~----------------------~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~   64 (162)
T 2p9j_A            9 LKLLIMDIDGVLTDGKLY--YT----------------------EHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSA   64 (162)
T ss_dssp             CCEEEECCTTTTSCSEEE--EE----------------------TTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCH
T ss_pred             eeEEEEecCcceECCcee--ec----------------------CCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcH
Confidence            346899999999986532  11                      01123345679999999999865 999999999999


Q ss_pred             HHHHHHhhhcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcCChh
Q 041003           90 YAMMMAKLLNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        90 Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd~~~  142 (282)
                      ++..+++.+.-.. +| ..     ..... .+.+-++.++-+.+.+++|+|+..
T Consensus        65 ~~~~~l~~~gl~~-~~-~~-----~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~  111 (162)
T 2p9j_A           65 PLITRLKELGVEE-IY-TG-----SYKKLEIYEKIKEKYSLKDEEIGFIGDDVV  111 (162)
T ss_dssp             HHHHHHHHTTCCE-EE-EC-----C--CHHHHHHHHHHTTCCGGGEEEEECSGG
T ss_pred             HHHHHHHHcCCHh-hc-cC-----CCCCHHHHHHHHHHcCCCHHHEEEECCCHH
Confidence            9999999886543 44 11     11100 111223344557789999999983

>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*

Probab=97.47  E-value=5e-05  Score=65.87  Aligned_cols=87  Identities=11%  Similarity=0.008  Sum_probs=63.7

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCC----CccEEEEcCCC--CC--cHHHHHHHHCCCceecH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNL----SVAQVVSVSSR--LG--IKGHRLAEQHNKFLVHP  261 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~----~vTHlV~~~~~--~~--t~K~~~A~~~gi~IV~~  261 (282)
                      ..+|.|+.++|.+..    +....+.++++..||+|.....+    ..||.++....  .+  ..++..+.+.|++||++
T Consensus       133 ~~lF~g~~v~l~~~~----~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~~  208 (235)
T 3al2_A          133 EGAFSGWKVILHVDQ----SREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLRT  208 (235)
T ss_dssp             SSTTTTCEEEEECCH----HHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEET
T ss_pred             CCCCCCcEEEEecCC----CcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEcH
Confidence            479999999988631    33567899999999999866432    46898875211  11  12466667789999999


Q ss_pred             HHHHHHHHhCCcCCCCCCC
Q 041003          262 QWIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       262 ~WL~~c~~~~~r~~E~~y~  280 (282)
                      +||.+|+-.....+.+.|.
T Consensus       209 ewlld~i~~~~~~~~~~y~  227 (235)
T 3al2_A          209 EYIADYLMQESPPHVENYC  227 (235)
T ss_dssp             HHHHHHHHCSSCCCHHHHB
T ss_pred             HHHHHHHhcCCCCChhheE
Confidence            9999999988776666653

>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*

Probab=97.46  E-value=0.0002  Score=64.15  Aligned_cols=59  Identities=8%  Similarity=0.005  Sum_probs=48.5

Q ss_pred             hhHHHHHHHHhCCeEeccc-CCCccEEEEcCCC--CCcHHHHHHHHCCCceecHHHHHHHHHh
Q 041003          211 FPLLKWRAGELGAACTDVY-NLSVAQVVSVSSR--LGIKGHRLAEQHNKFLVHPQWIYAAYYL  270 (282)
Q Consensus       211 ~~~l~~~~~~~Ga~v~~~~-~~~vTHlV~~~~~--~~t~K~~~A~~~gi~IV~~~WL~~c~~~  270 (282)
                      +..+...++.+|+++. ++ .+.|||||.....  .-|.|.-+|.-.|++||+++|+.+....
T Consensus       126 ~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~  187 (325)
T 3huf_A          126 LSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTV  187 (325)
T ss_dssp             HHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHh
Confidence            4558899999999999 88 6789999997211  2256699999999999999999998654

>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A

Probab=97.35  E-value=0.00046  Score=59.74  Aligned_cols=83  Identities=13%  Similarity=0.021  Sum_probs=62.3

Q ss_pred             ceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCC--CccEEEEcCCCCCcHHHHHHHHCCC--ceecHHHHHHHHHh
Q 041003          195 RCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNL--SVAQVVSVSSRLGIKGHRLAEQHNK--FLVHPQWIYAAYYL  270 (282)
Q Consensus       195 G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~--~vTHlV~~~~~~~t~K~~~A~~~gi--~IV~~~WL~~c~~~  270 (282)
                      ..++++||..... -+..+ .+....+|-.+..++++  .++|++|+. -..|.|+..|.+.|.  +|++|+||.+|++.
T Consensus        22 ~i~ai~TGc~~~~-~~~~D-~~~Lr~LGI~Iv~d~~~~~~~n~LiAPk-ilRT~KFL~sLa~~P~~~il~p~FI~~~Lk~   98 (256)
T 3t7k_A           22 DLKAVCTGCFHDG-FNEVD-IEILNQLGIKIFDNIKETDKLNCIFAPK-ILRTEKFLKSLSFEPLKFALKPEFIIDLLKQ   98 (256)
T ss_dssp             CEEEEESSSCSSC-CCHHH-HHHHHHTTEEECSSCCGGGCCCEEECSS-CCCBHHHHHHTTSTTCCEEECTHHHHHHHHH
T ss_pred             eEEEEecCCcccc-cCHHH-HHHHHHcCeEEEecCcccCCCCEEEcCc-hhhHHHHHHHhccCccceEeCHHHHHHHHHH
Confidence            4566667764111 12222 56789999999999964  799999993 478999999999876  59999999999998


Q ss_pred             ---CC------cCCCCCCC
Q 041003          271 ---WS------RQVEKDYF  280 (282)
Q Consensus       271 ---~~------r~~E~~y~  280 (282)
                         .+      .++.++|.
T Consensus        99 ih~~~~~~~~~~l~~~dY~  117 (256)
T 3t7k_A           99 IHSKKDKLSQININLFDYE  117 (256)
T ss_dssp             HC-------CCCCCSSTTB
T ss_pred             hhcCCcccccccCChhhcc
Confidence               66      66777774

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=97.35  E-value=1.6e-05  Score=65.54  Aligned_cols=82  Identities=10%  Similarity=0.032  Sum_probs=56.0

Q ss_pred             EEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhh-hcCCCcccccccEEEccCCCC--C----ceeccccccccC
Q 041003           60 LVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKL-LNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQE  131 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~-ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~  131 (282)
                      ++...||+.++|+.+. +.+.++|.|++.+.++..+++. +.-. .+|  +.+++.+++..  +    +.+-++.++-+.
T Consensus        89 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~~~~l~-~~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~  165 (206)
T 2b0c_A           89 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIR-DAA--DHIYLSQDLGMRKPEARIYQHVLQAEGFSP  165 (206)
T ss_dssp             EEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHH-HHC--SEEEEHHHHTCCTTCHHHHHHHHHHHTCCG
T ss_pred             hcccCccHHHHHHHHHHCCCeEEEEECCChHHHHHHHHhccChh-hhe--eeEEEecccCCCCCCHHHHHHHHHHcCCCH
Confidence            4688999999999998 5699999999998887665554 2211 235  45566554321  1    222334455678


Q ss_pred             CceEEEcCChhhh
Q 041003          132 WGVVIVDDTEKVW  144 (282)
Q Consensus       132 ~~vvivDd~~~~~  144 (282)
                      +++++|+|++.-.
T Consensus       166 ~~~~~vgD~~~Di  178 (206)
T 2b0c_A          166 SDTVFFDDNADNI  178 (206)
T ss_dssp             GGEEEEESCHHHH
T ss_pred             HHeEEeCCCHHHH
Confidence            8999999998533

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=97.34  E-value=1.5e-05  Score=66.10  Aligned_cols=40  Identities=8%  Similarity=0.172  Sum_probs=34.8

Q ss_pred             EEecccHHHHHHHHhc--CceEEEEcCCcHHHHHHHHhhhcC
Q 041003           61 VKVRSYIRKFLKKASK--MYDIYLCTTRIRSYAMMMAKLLNP  100 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~--~yei~i~T~~~~~Ya~~v~~~ldp  100 (282)
                      +...||+.++|+.+.+  .+.++|.|++.+.++..+++.++-
T Consensus        72 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~gl  113 (193)
T 2i7d_A           72 LEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRW  113 (193)
T ss_dssp             CCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCTTTHHHHHHH
T ss_pred             CccCcCHHHHHHHHHhCCCCeEEEEeCCChhhHHHHHHHhCc
Confidence            4678999999999987  499999999999998888887654

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=97.34  E-value=5.1e-05  Score=64.04  Aligned_cols=80  Identities=9%  Similarity=-0.098  Sum_probs=55.3

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      ....||+.++|+.+.+. +.++|.|++.+.++..+++. .-.. +|..+.+++.+++..  +    +.+=++.++-++++
T Consensus       107 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~~-~f~~~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  184 (247)
T 3dv9_A          107 AERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNH-NFPG-IFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPNE  184 (247)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSCC---CHHHHHH-HSTT-TCCGGGEECGGGCSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEcCCchHHHHHHHHh-hHHH-hcCCCeEEecccCCCCCCCCHHHHHHHHHcCCChhh
Confidence            56789999999999765 99999999999999988887 4333 451145666665532  1    22333445568899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|+..
T Consensus       185 ~i~vGD~~~  193 (247)
T 3dv9_A          185 ALVIENAPL  193 (247)
T ss_dssp             EEEEECSHH
T ss_pred             eEEEeCCHH
Confidence            999999983

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=97.33  E-value=0.00064  Score=59.05  Aligned_cols=79  Identities=16%  Similarity=0.105  Sum_probs=58.5

Q ss_pred             EEecccHHHHHHHHhc-Cc--eEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC----------Cceeccccc
Q 041003           61 VKVRSYIRKFLKKASK-MY--DIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE----------KGKKSGDLV  127 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~y--ei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~----------~~~KdL~~l  127 (282)
                      +...||+.++|+.+.+ .+  .++|.|++.+.++..+++.+.-.. +|  +.+++.+....          .+.+=++.+
T Consensus       141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl~~-~f--d~v~~~~~~~~~~~~~Kp~~~~~~~~~~~l  217 (282)
T 3nuq_A          141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIAD-LF--DGLTYCDYSRTDTLVCKPHVKAFEKAMKES  217 (282)
T ss_dssp             CCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTCTT-SC--SEEECCCCSSCSSCCCTTSHHHHHHHHHHH
T ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCccc-cc--ceEEEeccCCCcccCCCcCHHHHHHHHHHc
Confidence            5678999999999976 58  999999999999999999887654 56  55665544321          112233345


Q ss_pred             cccC-CceEEEcCChh
Q 041003          128 LRQE-WGVVIVDDTEK  142 (282)
Q Consensus       128 ~~~~-~~vvivDd~~~  142 (282)
                      +-++ +++++|+|+..
T Consensus       218 gi~~~~~~i~vGD~~~  233 (282)
T 3nuq_A          218 GLARYENAYFIDDSGK  233 (282)
T ss_dssp             TCCCGGGEEEEESCHH
T ss_pred             CCCCcccEEEEcCCHH
Confidence            5576 99999999983

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=97.27  E-value=6.6e-05  Score=67.77  Aligned_cols=80  Identities=5%  Similarity=0.036  Sum_probs=55.4

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccC---------CCC------Cceecc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITRED---------FKE------KGKKSG  124 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~---------~~~------~~~KdL  124 (282)
                      +..+||+.++|+.+.+. +.++|.|++...++..+++.+.-.. +| ...+...+.         ...      .+.+-+
T Consensus       178 ~~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~-~f-~~~l~~~dg~~tg~i~~~~~~~kpkp~~~~~~~  255 (317)
T 4eze_A          178 MTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDY-AF-SNTVEIRDNVLTDNITLPIMNAANKKQTLVDLA  255 (317)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSE-EE-EECEEEETTEEEEEECSSCCCHHHHHHHHHHHH
T ss_pred             CEECcCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCe-EE-EEEEEeeCCeeeeeEecccCCCCCCHHHHHHHH
Confidence            46899999999999765 9999999999999999999987643 45 333222111         100      011122


Q ss_pred             ccccccCCceEEEcCChh
Q 041003          125 DLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus       125 ~~l~~~~~~vvivDd~~~  142 (282)
                      +.++-+.+++++|+|++.
T Consensus       256 ~~lgv~~~~~i~VGDs~~  273 (317)
T 4eze_A          256 ARLNIATENIIACGDGAN  273 (317)
T ss_dssp             HHHTCCGGGEEEEECSGG
T ss_pred             HHcCCCcceEEEEeCCHH
Confidence            334447789999999974

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=97.23  E-value=0.00092  Score=54.34  Aligned_cols=69  Identities=17%  Similarity=0.263  Sum_probs=43.6

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCc---HHHH--HHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceE
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRI---RSYA--MMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVV  135 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~---~~Ya--~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vv  135 (282)
                      +...||+.++|+.+.+.+.+.|-|++.   +...  ...++..-+...+|  +.+++.++.         ++    +.++
T Consensus        68 ~~~~pg~~e~L~~L~~~~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~~~~--~~i~~~~~~---------~l----~~~l  132 (180)
T 3bwv_A           68 LDVMPHAQEVVKQLNEHYDIYIATAAMDVPTSFHDKYEWLLEYFPFLDPQ--HFVFCGRKN---------II----LADY  132 (180)
T ss_dssp             CCBCTTHHHHHHHHTTTSEEEEEECC--CCSHHHHHHHHHHHHCTTSCGG--GEEECSCGG---------GB----CCSE
T ss_pred             CCCCcCHHHHHHHHHhcCCEEEEeCCCCcchHHHHHHHHHHHHcCCCCcc--cEEEeCCcC---------ee----cccE
Confidence            567899999999998889999999983   2232  33333321221233  555654431         12    6689


Q ss_pred             EEcCChhhh
Q 041003          136 IVDDTEKVW  144 (282)
Q Consensus       136 ivDd~~~~~  144 (282)
                      +|||++..-
T Consensus       133 ~ieDs~~~i  141 (180)
T 3bwv_A          133 LIDDNPKQL  141 (180)
T ss_dssp             EEESCHHHH
T ss_pred             EecCCcchH
Confidence            999998643

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=97.21  E-value=0.00044  Score=58.20  Aligned_cols=102  Identities=15%  Similarity=0.057  Sum_probs=65.8

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcH
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIR   88 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~   88 (282)
                      +...+++|+||||+.........                          ......||+.++|+.+.+ -+.++|.|++..
T Consensus        30 ~~k~i~~D~DGtl~~~~~y~~~~--------------------------~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~   83 (218)
T 2o2x_A           30 HLPALFLDRDGTINVDTDYPSDP--------------------------AEIVLRPQMLPAIATANRAGIPVVVVTNQSG   83 (218)
T ss_dssp             SCCCEEECSBTTTBCCCSCTTCG--------------------------GGCCBCGGGHHHHHHHHHHTCCEEEEEECHH
T ss_pred             cCCEEEEeCCCCcCCCCcccCCc--------------------------ccCeECcCHHHHHHHHHHCCCEEEEEcCcCC
Confidence            45578999999999763211000                          012467999999999975 599999999998


Q ss_pred             ---------------HHHHHHHhhhcCCCcccccccEEEc-----------cCCC--CC----ceeccccccccCCceEE
Q 041003           89 ---------------SYAMMMAKLLNPKCEYHISSRLITR-----------EDFK--EK----GKKSGDLVLRQEWGVVI  136 (282)
Q Consensus        89 ---------------~Ya~~v~~~ldp~~~~f~~~rv~~r-----------~~~~--~~----~~KdL~~l~~~~~~vvi  136 (282)
                                     .++..+++.+.-.   | ..-+.+.           +++.  ++    +.+-+++++-+.+++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~gl~---~-~~~~~~~~~~~g~~~~~~~~~~~~KP~~~~~~~~~~~~~i~~~~~~~  159 (218)
T 2o2x_A           84 IARGYFGWSAFAAVNGRVLELLREEGVF---V-DMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLI  159 (218)
T ss_dssp             HHTTSCCHHHHHHHHHHHHHHHHHTTCC---C-SEEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHHTCCGGGCEE
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHcCCc---e-eeEEEeecCCCCceeecccCCccCCCCHHHHHHHHHHcCCCHHHEEE
Confidence                           7888888776532   3 1111222           2222  11    12223344557889999


Q ss_pred             EcCCh
Q 041003          137 VDDTE  141 (282)
Q Consensus       137 vDd~~  141 (282)
                      |.|+.
T Consensus       160 VGD~~  164 (218)
T 2o2x_A          160 VGDKL  164 (218)
T ss_dssp             EESSH
T ss_pred             EeCCH
Confidence            99997

>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.0016  Score=53.20  Aligned_cols=95  Identities=14%  Similarity=0.032  Sum_probs=67.5

Q ss_pred             cccccchhheeecceeEEeeccCCCCccchhHHHHHHHHhCCeE-ecccCCCccEEEEcCC--CCCcHHHHHHHHCCCce
Q 041003          182 RCFLGKIQRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAAC-TDVYNLSVAQVVSVSS--RLGIKGHRLAEQHNKFL  258 (282)
Q Consensus       182 r~iL~~~r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v-~~~~~~~vTHlV~~~~--~~~t~K~~~A~~~gi~I  258 (282)
                      +-|++..+..-++|.++|+...-|..+.+.-.+.......||.- ...+.-.+||.||..-  +...+..-.|+-++|+|
T Consensus       151 kvilrthkmtdmsgitvclgpldplkeisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipi  230 (290)
T 4gns_A          151 KVILRTHKMTDMSGITVCLGPLDPLKEISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPI  230 (290)
T ss_dssp             EEEEECCCTTCCTTCCEEECCCCGGGTCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCE
T ss_pred             heeeeecccccccCceEEecCCChhhhhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCc
Confidence            44777777777899999996654543323344567778889865 4446668999999831  12345566677889999


Q ss_pred             ecHHHHHHHHHhCCcCCC
Q 041003          259 VHPQWIYAAYYLWSRQVE  276 (282)
Q Consensus       259 V~~~WL~~c~~~~~r~~E  276 (282)
                      |.|+|+.+|--.++-+.-
T Consensus       231 vrpewvracevekrivgv  248 (290)
T 4gns_A          231 VRPEWVRACEVEKRIVGV  248 (290)
T ss_dssp             ECTHHHHHHHHTTSCCCS
T ss_pred             cCHHHHHHHhhhheeeee
Confidence            999999999887665543

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=97.06  E-value=0.00014  Score=62.63  Aligned_cols=76  Identities=12%  Similarity=0.010  Sum_probs=54.5

Q ss_pred             EecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           62 KVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        62 ~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      ...||+.++|+.+.+. +.+.+-|++  ..+..+++.++-.. +|  +.+++.++...      .+.+-+++++-+++++
T Consensus       116 ~~~p~~~~ll~~Lk~~g~~i~i~~~~--~~~~~~L~~~gl~~-~F--d~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~  190 (250)
T 4gib_A          116 DILPGIESLLIDVKSNNIKIGLSSAS--KNAINVLNHLGISD-KF--DFIADAGKCKNNKPHPEIFLMSAKGLNVNPQNC  190 (250)
T ss_dssp             GSCTTHHHHHHHHHHTTCEEEECCSC--TTHHHHHHHHTCGG-GC--SEECCGGGCCSCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             ccchhHHHHHHHHHhccccccccccc--chhhhHhhhccccc-cc--ceeecccccCCCCCcHHHHHHHHHHhCCChHHe
Confidence            4679999999999754 666664443  45778888876554 67  66777776642      2345566667788999


Q ss_pred             EEEcCChh
Q 041003          135 VIVDDTEK  142 (282)
Q Consensus       135 vivDd~~~  142 (282)
                      ++|+|++.
T Consensus       191 l~VGDs~~  198 (250)
T 4gib_A          191 IGIEDASA  198 (250)
T ss_dssp             EEEESSHH
T ss_pred             EEECCCHH
Confidence            99999984

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=96.95  E-value=0.0011  Score=54.20  Aligned_cols=99  Identities=17%  Similarity=0.062  Sum_probs=61.1

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++|+||||+.....  .. .             .      ...-.....++++  +|+.+.+ .+.++|.|++.+.+
T Consensus        13 k~vifD~DGTL~d~~~~--~~-~-------------~------~~~~~~~~~~~~~--~l~~L~~~g~~~~i~T~~~~~~   68 (176)
T 3mmz_A           13 DAVVLDFDGTQTDDRVL--ID-S-------------D------GREFVSVHRGDGL--GIAALRKSGLTMLILSTEQNPV   68 (176)
T ss_dssp             SEEEECCTTTTSCSCCE--EC-T-------------T------CCEEEEEEHHHHH--HHHHHHHTTCEEEEEESSCCHH
T ss_pred             CEEEEeCCCCcCcCCEe--ec-C-------------C------ccHhHhcccccHH--HHHHHHHCCCeEEEEECcChHH
Confidence            47899999999983221  11 0             0      0001112344444  7888864 59999999999999


Q ss_pred             HHHHHhhhcCCCcccccccEEEccCCCCC-ceeccccccccCCceEEEcCChh
Q 041003           91 AMMMAKLLNPKCEYHISSRLITREDFKEK-GKKSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        91 a~~v~~~ldp~~~~f~~~rv~~r~~~~~~-~~KdL~~l~~~~~~vvivDd~~~  142 (282)
                      +..+++.+.-.  +| ...     ..... ..+=++.++-+.+++++|.|+..
T Consensus        69 ~~~~~~~lgi~--~~-~~~-----~~k~~~l~~~~~~~~~~~~~~~~vGD~~n  113 (176)
T 3mmz_A           69 VAARARKLKIP--VL-HGI-----DRKDLALKQWCEEQGIAPERVLYVGNDVN  113 (176)
T ss_dssp             HHHHHHHHTCC--EE-ESC-----SCHHHHHHHHHHHHTCCGGGEEEEECSGG
T ss_pred             HHHHHHHcCCe--eE-eCC-----CChHHHHHHHHHHcCCCHHHEEEEcCCHH
Confidence            99999998765  55 211     11001 11122334456788999999873

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=96.88  E-value=0.0018  Score=51.66  Aligned_cols=101  Identities=10%  Similarity=-0.107  Sum_probs=62.5

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~   89 (282)
                      -..+++|+||||+.+...-...                      ...-.-...++++  .|+.+.+ .+.++|.|++.+.
T Consensus         4 ik~vifD~DGTL~~~~~~~~~~----------------------~~~~~~~~~~~~~--~l~~l~~~g~~~~i~T~~~~~   59 (164)
T 3e8m_A            4 IKLILTDIDGVWTDGGMFYDQT----------------------GNEWKKFNTSDSA--GIFWAHNKGIPVGILTGEKTE   59 (164)
T ss_dssp             CCEEEECSTTTTSSSEEEECSS----------------------SCEEEEEEGGGHH--HHHHHHHTTCCEEEECSSCCH
T ss_pred             ceEEEEcCCCceEcCcEEEcCC----------------------CcEEEEecCChHH--HHHHHHHCCCEEEEEeCCChH
Confidence            3478999999999875321000                      0000112344443  7888865 4999999999999


Q ss_pred             HHHHHHhhhcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcCChh
Q 041003           90 YAMMMAKLLNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        90 Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd~~~  142 (282)
                      ++..+++.+.-.. +| ...     .... .+.+=++.++-+++.+++|.|+..
T Consensus        60 ~~~~~~~~~gl~~-~~-~~~-----kpk~~~~~~~~~~~~~~~~~~~~vGD~~~  106 (164)
T 3e8m_A           60 IVRRRAEKLKVDY-LF-QGV-----VDKLSAAEELCNELGINLEQVAYIGDDLN  106 (164)
T ss_dssp             HHHHHHHHTTCSE-EE-CSC-----SCHHHHHHHHHHHHTCCGGGEEEECCSGG
T ss_pred             HHHHHHHHcCCCE-ee-ccc-----CChHHHHHHHHHHcCCCHHHEEEECCCHH
Confidence            9999999886543 34 111     0000 111223344457889999999984

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=96.84  E-value=0.00046  Score=64.21  Aligned_cols=80  Identities=14%  Similarity=0.076  Sum_probs=54.7

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccE------EEc----cCCCC-----Cceecc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRL------ITR----EDFKE-----KGKKSG  124 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv------~~r----~~~~~-----~~~KdL  124 (282)
                      +..+||+.++|+.+.+. +.++|.|++...++..+++.++-.. +| .+.+      ++.    +.+..     .+.+=+
T Consensus       255 ~~~~pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~-~~-~~~l~~~dg~~tg~~~~~v~~~kpk~~~~~~~~  332 (415)
T 3p96_A          255 LELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDY-VA-ANELEIVDGTLTGRVVGPIIDRAGKATALREFA  332 (415)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSE-EE-EECEEEETTEEEEEECSSCCCHHHHHHHHHHHH
T ss_pred             CccCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccc-ee-eeeEEEeCCEEEeeEccCCCCCcchHHHHHHHH
Confidence            47899999999999865 9999999999999999999987653 34 2221      111    11111     011122


Q ss_pred             ccccccCCceEEEcCChh
Q 041003          125 DLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus       125 ~~l~~~~~~vvivDd~~~  142 (282)
                      +.++-+++++++|+|+..
T Consensus       333 ~~~gi~~~~~i~vGD~~~  350 (415)
T 3p96_A          333 QRAGVPMAQTVAVGDGAN  350 (415)
T ss_dssp             HHHTCCGGGEEEEECSGG
T ss_pred             HHcCcChhhEEEEECCHH
Confidence            233447789999999983

>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0054  Score=48.85  Aligned_cols=79  Identities=16%  Similarity=0.048  Sum_probs=55.3

Q ss_pred             eee-cceeEEeeccCCCCc---------cchhHHHHHHHHhCCeEecccCCCccEEEEcCCC------CCcHHHHHHHHC
Q 041003          191 QIL-VRCTLFFSRDVDDKE---------FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR------LGIKGHRLAEQH  254 (282)
Q Consensus       191 ~vl-~G~~i~fsg~~~~~~---------~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~------~~t~K~~~A~~~  254 (282)
                      .|+ +..+|+|-+.-....         -.+..+++....+||++.+-++.+|||||+.+..      +.++-...|.++
T Consensus        19 kIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~~   98 (151)
T 3oq0_A           19 SHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKN   98 (151)
T ss_dssp             --CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHT
T ss_pred             HHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHc
Confidence            466 778999976532211         0224456777899999999999999999998311      344556789999


Q ss_pred             CCceecHHHHHHHHH
Q 041003          255 NKFLVHPQWIYAAYY  269 (282)
Q Consensus       255 gi~IV~~~WL~~c~~  269 (282)
                      |++|-+.+=+.-=+.
T Consensus        99 ~mKIWs~EKl~RfL~  113 (151)
T 3oq0_A           99 YMKVWSYEKAARFLK  113 (151)
T ss_dssp             TCEEEEHHHHHHHHH
T ss_pred             CCeeecHHHHHHHHH
Confidence            999988877764444

>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}

Probab=96.73  E-value=0.001  Score=49.09  Aligned_cols=82  Identities=17%  Similarity=0.138  Sum_probs=62.9

Q ss_pred             heeecceeEEeeccCCCCc--cchhHHHHHHHHhCCeEecccCCCc--cEEEEcCCCCCcHHHHHHHHCCCceecHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKE--FEFPLLKWRAGELGAACTDVYNLSV--AQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIY  265 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~--~~~~~l~~~~~~~Ga~v~~~~~~~v--THlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~  265 (282)
                      ..+|.|..+++..-.....  -..+.|.+++...||+|...+..+.  .+.|++  ..++.        +++.|+|..|.
T Consensus         9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVS--pyN~t--------~LpTVtpTYI~   78 (106)
T 2l42_A            9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVS--PYNHT--------NLPTVTPTYIK   78 (106)
T ss_dssp             SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBC--TTCCC--------SSSBCCTTHHH
T ss_pred             CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEe--CCCCC--------CCccccHHHHH
Confidence            4579999999976422211  2357899999999999998887544  456665  32222        78999999999


Q ss_pred             HHHHhCCcCCCCCCCC
Q 041003          266 AAYYLWSRQVEKDYFP  281 (282)
Q Consensus       266 ~c~~~~~r~~E~~y~~  281 (282)
                      +|+...+.++-.+|++
T Consensus        79 aC~~~nTLLnv~~YLv   94 (106)
T 2l42_A           79 ACCQSNSLLNMENYLV   94 (106)
T ss_dssp             HHHHSTTSCGGGGCCB
T ss_pred             HHHhcCceeccccccc
Confidence            9999999999999975

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=96.71  E-value=0.0091  Score=51.13  Aligned_cols=41  Identities=20%  Similarity=0.098  Sum_probs=36.7

Q ss_pred             EecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003           62 KVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKC  102 (282)
Q Consensus        62 ~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~  102 (282)
                      ..+||+.++|+.+.+ .+.+.|.|++.+.++..+++.+.-..
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~  185 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLDD  185 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSE
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCChh
Confidence            789999999999976 59999999999999999999986543

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=96.67  E-value=0.00014  Score=59.17  Aligned_cols=76  Identities=12%  Similarity=0.107  Sum_probs=51.4

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCC------C-CCceeccccccccCC
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF------K-EKGKKSGDLVLRQEW  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~------~-~~~~KdL~~l~~~~~  132 (282)
                      +..+||+.++|+.+.+. +.++|.|++.+.++..+ +.+.-... |  ..+.+.+..      . .....-+..+  +.+
T Consensus        78 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~-~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~k~~~l~~l--~~~  151 (201)
T 4ap9_A           78 VNVSPEARELVETLREKGFKVVLISGSFEEVLEPF-KELGDEFM-A--NRAIFEDGKFQGIRLRFRDKGEFLKRF--RDG  151 (201)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEEEETTTSGGG-TTTSSEEE-E--EEEEEETTEEEEEECCSSCHHHHHGGG--TTS
T ss_pred             CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHcCchhh-e--eeEEeeCCceECCcCCccCHHHHHHhc--CcC
Confidence            46899999999999865 99999999999999888 77764432 3  332222211      1 0111233334  778


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      .++.|.|++.
T Consensus       152 ~~i~iGD~~~  161 (201)
T 4ap9_A          152 FILAMGDGYA  161 (201)
T ss_dssp             CEEEEECTTC
T ss_pred             cEEEEeCCHH
Confidence            8999999873

>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*

Probab=96.63  E-value=0.0035  Score=53.62  Aligned_cols=90  Identities=12%  Similarity=0.180  Sum_probs=57.9

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecc--cC--------CCccEEEEcCCCCCcH---HHH-HHH-H
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDV--YN--------LSVAQVVSVSSRLGIK---GHR-LAE-Q  253 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~--~~--------~~vTHlV~~~~~~~t~---K~~-~A~-~  253 (282)
                      +..+|.|+.+++++.+.. .+....+.++++..||++...  +.        +.-.+||+.  +....   +.. .+. .
T Consensus       110 ~~~LF~G~~f~it~~~~~-~p~~~~l~~iI~~~GG~v~~~p~~~~~~~~~~~~~~~~vis~--~~d~~~~~~f~~~~~~~  186 (220)
T 3l41_A          110 GPSLLEDYVVYLTSKTVA-PENVPAVISIVKSNGGVCSTLNVYNKRLARHLEDGNVVLITC--NEDSHIWTNFLDNASQN  186 (220)
T ss_dssp             CSCTTTTSEEEEETTSSC-GGGHHHHHHHHHHTTCEEEEECSCCHHHHHHHHHCCEEEEEC--GGGHHHHTTTHHHHTTC
T ss_pred             CchhhhheeEEEeccccC-CCCCceEEEEEecCCcEechhhHHHHHHHHhcccCCEEEEEe--CCcchHHHHhhcccccc
Confidence            478999999999986510 134788999999999999871  11        112466665  21111   111 121 2


Q ss_pred             CCCceecHHHHHHHHHhCCcCCCCCCCC
Q 041003          254 HNKFLVHPQWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       254 ~gi~IV~~~WL~~c~~~~~r~~E~~y~~  281 (282)
                      .++.||+++|+..++-+.+--=|+.+.|
T Consensus       187 ~~~~i~~~e~ll~~il~q~l~~~~~~~~  214 (220)
T 3l41_A          187 KTIFLQNYDWLIKTVLRQEIDVNDRIAD  214 (220)
T ss_dssp             TTEEEEEHHHHHHHHHHTCCCTTCCBCG
T ss_pred             ceEEEechhHHHHHHHHHHcCcchHHHH
Confidence            3567999999999998776655555543

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=96.63  E-value=0.003  Score=55.22  Aligned_cols=120  Identities=17%  Similarity=0.097  Sum_probs=62.5

Q ss_pred             cCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCccee-ecceeEEEEecccHHHHHHHHhc-CceEEEEcC
Q 041003            8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFK-MASELFLVKVRSYIRKFLKKASK-MYDIYLCTT   85 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~   85 (282)
                      ..++..+|+||||||+.+...-  .   . ... ......+  .+. +- ..--....||+.++|+.+.+ -+.++|.|+
T Consensus        56 ~~~~kavifDlDGTLld~~~~~--~---~-~~~-~~~~~~~--~~~~~~-~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTn  125 (258)
T 2i33_A           56 TEKKPAIVLDLDETVLDNSPHQ--A---M-SVK-TGKGYPY--KWDDWI-NKAEAEALPGSIDFLKYTESKGVDIYYISN  125 (258)
T ss_dssp             CSSEEEEEECSBTTTEECHHHH--H---H-HHH-HSCCTTT--THHHHH-HHCCCEECTTHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEeCcccCcCCHHHH--H---H-HHh-cccchHH--HHHHHH-HcCCCCcCccHHHHHHHHHHCCCEEEEEcC
Confidence            4567799999999999985210  0   0 000 0000000  000 00 00013577999999999975 599999999


Q ss_pred             Cc---HHHHHHHHhhhcCCC-cccccccEEEccCCCCCceecccccc--ccCCceEEEcCChh
Q 041003           86 RI---RSYAMMMAKLLNPKC-EYHISSRLITREDFKEKGKKSGDLVL--RQEWGVVIVDDTEK  142 (282)
Q Consensus        86 ~~---~~Ya~~v~~~ldp~~-~~f~~~rv~~r~~~~~~~~KdL~~l~--~~~~~vvivDd~~~  142 (282)
                      ..   +..+...++.+.-.. .+|  . ++.+.+..  +.++.....  .+...+++|.|+..
T Consensus       126 r~~~~~~~~~~~L~~~Gl~~v~~~--~-vi~~~~~~--~K~~~~~~~~~~~~~~~l~VGDs~~  183 (258)
T 2i33_A          126 RKTNQLDATIKNLERVGAPQATKE--H-ILLQDPKE--KGKEKRRELVSQTHDIVLFFGDNLS  183 (258)
T ss_dssp             EEGGGHHHHHHHHHHHTCSSCSTT--T-EEEECTTC--CSSHHHHHHHHHHEEEEEEEESSGG
T ss_pred             CchhHHHHHHHHHHHcCCCcCCCc--e-EEECCCCC--CCcHHHHHHHHhCCCceEEeCCCHH
Confidence            88   445555555554331 123  3 33333321  112221111  23344778888864

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=96.58  E-value=0.0027  Score=52.86  Aligned_cols=45  Identities=18%  Similarity=0.245  Sum_probs=38.7

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCC-ccc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKC-EYH  105 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~-~~f  105 (282)
                      +..+||+.++|+.+.+. +.++|.|++.+.++..+++.+.-.. .+|
T Consensus        85 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~f  131 (225)
T 1nnl_A           85 PHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVF  131 (225)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCGGGEE
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcCCCcccEE
Confidence            56899999999999764 9999999999999999999987553 355

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=96.52  E-value=0.012  Score=46.75  Aligned_cols=96  Identities=10%  Similarity=0.052  Sum_probs=58.6

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++||||||+..... ..+                             ..-|++.+.|+++.+ -+.++|+|.-....
T Consensus         4 k~i~~DlDGTL~~~~~~-~i~-----------------------------~~~~~~~~al~~l~~~G~~iii~TgR~~~~   53 (142)
T 2obb_A            4 MTIAVDFDGTIVEHRYP-RIG-----------------------------EEIPFAVETLKLLQQEKHRLILWSVREGEL   53 (142)
T ss_dssp             CEEEECCBTTTBCSCTT-SCC-----------------------------CBCTTHHHHHHHHHHTTCEEEECCSCCHHH
T ss_pred             eEEEEECcCCCCCCCCc-ccc-----------------------------ccCHHHHHHHHHHHHCCCEEEEEeCCCccc
Confidence            46899999999985321 111                             134789999999965 59999999987666


Q ss_pred             HHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcCChh
Q 041003           91 AMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        91 a~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd~~~  142 (282)
                      ...+.+.++..+.-+  . .++-+...  ..+-.....+.+.-.++|||+..
T Consensus        54 ~~~~~~~l~~~gi~~--~-~I~~n~P~--~~~~~~~~~rK~~~~~fIDDR~~  100 (142)
T 2obb_A           54 LDEAIEWCRARGLEF--Y-AANKDYPE--EERDHQGFSRKLKADLFIDDRNV  100 (142)
T ss_dssp             HHHHHHHHHTTTCCC--S-EESSSSTT--C---CCSCCSSCCCSEEECTTST
T ss_pred             HHHHHHHHHHcCCCe--E-EEEcCCch--hhhcchhhcCCcCCCEEeecccc
Confidence            677777777665322  2 22221110  01100112234566778999884

>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}

Probab=96.52  E-value=0.0098  Score=46.46  Aligned_cols=73  Identities=18%  Similarity=0.066  Sum_probs=53.0

Q ss_pred             ceeEEeeccCCCCc---------cchhHHHHHHHHhCCeEecccCCCccEEEEcCCC------CCcHHHHHHHHCCCcee
Q 041003          195 RCTLFFSRDVDDKE---------FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR------LGIKGHRLAEQHNKFLV  259 (282)
Q Consensus       195 G~~i~fsg~~~~~~---------~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~------~~t~K~~~A~~~gi~IV  259 (282)
                      ..+|+|.+.-+...         -....+.+-...+||++.+-++.+|||||+.+..      +.++-...|.++|++|-
T Consensus         7 ~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIW   86 (134)
T 3oq4_A            7 DSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVW   86 (134)
T ss_dssp             TCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEE
T ss_pred             cceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeee
Confidence            46788877643321         1235567778899999999999999999998311      33445678999999998


Q ss_pred             cHHHHHHH
Q 041003          260 HPQWIYAA  267 (282)
Q Consensus       260 ~~~WL~~c  267 (282)
                      +.+=+.-=
T Consensus        87 s~EKl~Rf   94 (134)
T 3oq4_A           87 SYEKAARF   94 (134)
T ss_dssp             EHHHHHHH
T ss_pred             eHHHHHHH
Confidence            88766543

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=96.42  E-value=0.0053  Score=50.00  Aligned_cols=100  Identities=11%  Similarity=-0.090  Sum_probs=65.6

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++|+||||+.+...  ..                      ......-.+.|...+.|+.+.+ -+.++|.|+....+
T Consensus         9 k~i~~DlDGTL~~~~~~--~~----------------------~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~   64 (180)
T 1k1e_A            9 KFVITDVDGVLTDGQLH--YD----------------------ANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPI   64 (180)
T ss_dssp             CEEEEECTTTTSCSEEE--EE----------------------TTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHH
T ss_pred             eEEEEeCCCCcCCCCee--ec----------------------cCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHH
Confidence            47899999999986431  11                      0112334467788899999975 59999999999999


Q ss_pred             HHHHHhhhcCCCcccccccEEEccCCCCCcee-ccccccccCCceEEEcCChh
Q 041003           91 AMMMAKLLNPKCEYHISSRLITREDFKEKGKK-SGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        91 a~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~K-dL~~l~~~~~~vvivDd~~~  142 (282)
                      +..+++.+.-.. +| ..     .......++ =++.++-+++.+++|.|+..
T Consensus        65 ~~~~~~~lgl~~-~~-~~-----~k~k~~~~~~~~~~~~~~~~~~~~vGD~~~  110 (180)
T 1k1e_A           65 LRRRIADLGIKL-FF-LG-----KLEKETACFDLMKQAGVTAEQTAYIGDDSV  110 (180)
T ss_dssp             HHHHHHHHTCCE-EE-ES-----CSCHHHHHHHHHHHHTCCGGGEEEEECSGG
T ss_pred             HHHHHHHcCCce-ee-cC-----CCCcHHHHHHHHHHcCCCHHHEEEECCCHH
Confidence            999999987553 34 11     000001111 12233446788999999873

>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.0086  Score=48.06  Aligned_cols=73  Identities=19%  Similarity=0.126  Sum_probs=51.4

Q ss_pred             eeec-ceeEEeeccCCCCcc--ch-------hHHHHHHHHhCCeEecccCCCccEEEEcCCC------CCcHHHHHHHHC
Q 041003          191 QILV-RCTLFFSRDVDDKEF--EF-------PLLKWRAGELGAACTDVYNLSVAQVVSVSSR------LGIKGHRLAEQH  254 (282)
Q Consensus       191 ~vl~-G~~i~fsg~~~~~~~--~~-------~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~------~~t~K~~~A~~~  254 (282)
                      .+|. +++|+|-+.-+....  .+       ..+.+.+..+||++.+-++.+|||||+...-      +.++-...|.+.
T Consensus        57 kifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~~  136 (160)
T 3qbz_A           57 KIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKN  136 (160)
T ss_dssp             HHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHHT
T ss_pred             HhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHHc
Confidence            5888 899999876432110  01       2244567799999999999999999998421      223456778888


Q ss_pred             CCceecHHH
Q 041003          255 NKFLVHPQW  263 (282)
Q Consensus       255 gi~IV~~~W  263 (282)
                      +++|-+.+=
T Consensus       137 ~mKVW~yeK  145 (160)
T 3qbz_A          137 YMKVWSYEK  145 (160)
T ss_dssp             TCEEEEHHH
T ss_pred             CceecchHH
Confidence            998876653

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=96.30  E-value=0.0065  Score=49.89  Aligned_cols=102  Identities=17%  Similarity=0.056  Sum_probs=61.0

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcH
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIR   88 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~   88 (282)
                      +...+++|+||||+++...  .. .             +      ....-.+..+++  .+|+.+.+. +.++|.|++..
T Consensus        25 ~ik~vifD~DGTL~~~~~~--~~-~-------------~------~~~~~~~~~~d~--~~l~~L~~~g~~v~ivT~~~~   80 (188)
T 2r8e_A           25 NIRLLILDVDGVLSDGLIY--MG-N-------------N------GEELKAFNVRDG--YGIRCALTSDIEVAIITGRKA   80 (188)
T ss_dssp             TCSEEEECCCCCCBCSEEE--EE-T-------------T------SCEEEEEEHHHH--HHHHHHHTTTCEEEEECSSCC
T ss_pred             cCCEEEEeCCCCcCCCCEE--ec-C-------------C------CcEEEEeecccH--HHHHHHHHCCCeEEEEeCCCh
Confidence            4457899999999985421  01 0             0      000001122232  388888764 99999999999


Q ss_pred             HHHHHHHhhhcCCCcccccccEEEccCCCCCcee-ccccccccCCceEEEcCChh
Q 041003           89 SYAMMMAKLLNPKCEYHISSRLITREDFKEKGKK-SGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        89 ~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~K-dL~~l~~~~~~vvivDd~~~  142 (282)
                      ..+..+++.++-.. +| ..     .......++ =++.++-+.+++++|+|+..
T Consensus        81 ~~~~~~l~~lgl~~-~~-~~-----~kpk~~~~~~~~~~~g~~~~~~~~iGD~~~  128 (188)
T 2r8e_A           81 KLVEDRCATLGITH-LY-QG-----QSNKLIAFSDLLEKLAIAPENVAYVGDDLI  128 (188)
T ss_dssp             HHHHHHHHHHTCCE-EE-CS-----CSCSHHHHHHHHHHHTCCGGGEEEEESSGG
T ss_pred             HHHHHHHHHcCCce-ee-cC-----CCCCHHHHHHHHHHcCCCHHHEEEECCCHH
Confidence            99999999886442 34 11     111101111 12333446789999999983

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=96.23  E-value=0.0057  Score=50.39  Aligned_cols=101  Identities=16%  Similarity=-0.073  Sum_probs=62.7

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~   89 (282)
                      -..+++|+||||+.+...-  . ..                   ...-.....+++.  +|+.+.+ .+.++|.|++.+.
T Consensus        19 ik~vifD~DGTL~d~~~~~--~-~~-------------------~~~~~~~~~~~~~--~l~~L~~~g~~~~i~T~~~~~   74 (189)
T 3mn1_A           19 IKLAVFDVDGVLTDGRLYF--M-ED-------------------GSEIKTFNTLDGQ--GIKMLIASGVTTAIISGRKTA   74 (189)
T ss_dssp             CCEEEECSTTTTSCSEEEE--E-TT-------------------SCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCH
T ss_pred             CCEEEEcCCCCcCCccEee--c-cC-------------------CcEeeeeccccHH--HHHHHHHCCCEEEEEECcChH
Confidence            3578999999999874321  1 00                   0011123344444  8888875 5999999999999


Q ss_pred             HHHHHHhhhcCCCcccccccEEEccCCCCCce-eccccccccCCceEEEcCChh
Q 041003           90 YAMMMAKLLNPKCEYHISSRLITREDFKEKGK-KSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        90 Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~-KdL~~l~~~~~~vvivDd~~~  142 (282)
                      .+..+++.+.-.. +| .. +    ..+...+ +=++.++-+.+.+++|.|+..
T Consensus        75 ~~~~~~~~lgl~~-~f-~~-~----~~K~~~~~~~~~~~g~~~~~~~~vGD~~n  121 (189)
T 3mn1_A           75 IVERRAKSLGIEH-LF-QG-R----EDKLVVLDKLLAELQLGYEQVAYLGDDLP  121 (189)
T ss_dssp             HHHHHHHHHTCSE-EE-CS-C----SCHHHHHHHHHHHHTCCGGGEEEEECSGG
T ss_pred             HHHHHHHHcCCHH-Hh-cC-c----CChHHHHHHHHHHcCCChhHEEEECCCHH
Confidence            9999999987553 44 11 1    0000011 112233446788999999874

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=96.19  E-value=0.0041  Score=53.70  Aligned_cols=77  Identities=19%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      +...||+.++|+.+.+.+.++|.|++.+.++..+++.++-.. +|  +.+++.+++..      .+.+-+++++-+++++
T Consensus       120 ~~~~~g~~~~L~~L~~~~~l~i~Tn~~~~~~~~~l~~~gl~~-~f--~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~  196 (260)
T 2gfh_A          120 MILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQS-YF--DAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDC  196 (260)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHHTCGG-GC--SEEEEGGGSSSCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             CCCCcCHHHHHHHHHcCCcEEEEECcChHHHHHHHHhcCHHh-hh--heEEecCCCCCCCCCHHHHHHHHHHcCCChhhE
Confidence            457799999999998889999999999999999999987654 67  66677666532      1223344555678999


Q ss_pred             EEEcCC
Q 041003          135 VIVDDT  140 (282)
Q Consensus       135 vivDd~  140 (282)
                      ++|+|+
T Consensus       197 ~~vGDs  202 (260)
T 2gfh_A          197 VMVGDT  202 (260)
T ss_dssp             EEEESC
T ss_pred             EEECCC
Confidence            999995

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=96.19  E-value=0.0085  Score=49.66  Aligned_cols=79  Identities=5%  Similarity=-0.044  Sum_probs=60.9

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...|++.++|+.+.+. +.++|.|++.+.++..+++.+.-.. +|  +.+++.+++..      .+.+=++.++-++++
T Consensus        98 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~  174 (233)
T 3umb_A           98 LSAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMSG-LF--DHVLSVDAVRLYKTAPAAYALAPRAFGVPAAQ  174 (233)
T ss_dssp             CEECTTHHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCTT-TC--SEEEEGGGTTCCTTSHHHHTHHHHHHTSCGGG
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcHh-hc--CEEEEecccCCCCcCHHHHHHHHHHhCCCccc
Confidence            56789999999999876 9999999999999999998876554 56  66777776542      122333445567899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|+..
T Consensus       175 ~~~vGD~~~  183 (233)
T 3umb_A          175 ILFVSSNGW  183 (233)
T ss_dssp             EEEEESCHH
T ss_pred             EEEEeCCHH
Confidence            999999963

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=96.14  E-value=0.0069  Score=49.06  Aligned_cols=79  Identities=16%  Similarity=0.183  Sum_probs=60.5

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +..+|++.++|+.+.+. +.++|.|++.+.++..+++.+.-.. +|  +.+++.++...      .+.+-++.++-++++
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~  164 (214)
T 3e58_A           88 ELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQG-FF--DIVLSGEEFKESKPNPEIYLTALKQLNVQASR  164 (214)
T ss_dssp             HHBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEEGGGCSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CCcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHh-he--eeEeecccccCCCCChHHHHHHHHHcCCChHH
Confidence            36789999999999865 9999999999999999999886543 56  56777776542      112233445567899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      ++.|+|++.
T Consensus       165 ~~~iGD~~~  173 (214)
T 3e58_A          165 ALIIEDSEK  173 (214)
T ss_dssp             EEEEECSHH
T ss_pred             eEEEeccHh
Confidence            999999973

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=96.09  E-value=0.0012  Score=54.77  Aligned_cols=66  Identities=12%  Similarity=-0.080  Sum_probs=43.7

Q ss_pred             HHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcCChh
Q 041003           70 FLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        70 FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd~~~  142 (282)
                      -|+.+.+ .+.++|.|++.+..+..+++.+.-.. +| .. +    .... .+.+-++.++-+++.+++|.|+..
T Consensus        54 ~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~-~~-~~-~----kpk~~~~~~~~~~~~~~~~~~~~vGD~~~  121 (191)
T 3n1u_A           54 GLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITH-YY-KG-Q----VDKRSAYQHLKKTLGLNDDEFAYIGDDLP  121 (191)
T ss_dssp             HHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCE-EE-CS-C----SSCHHHHHHHHHHHTCCGGGEEEEECSGG
T ss_pred             HHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCcc-ce-eC-C----CChHHHHHHHHHHhCCCHHHEEEECCCHH
Confidence            3777765 59999999999999999999986543 34 11 1    0000 111222334557889999999983

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=96.08  E-value=0.0071  Score=50.49  Aligned_cols=80  Identities=16%  Similarity=0.233  Sum_probs=59.6

Q ss_pred             EEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~  132 (282)
                      .+...||+.++|+.+.+. +.++|.|++.+.++..+++.+.-.. +|  +.+++.+++..  +    +.+=++.++-+.+
T Consensus        81 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~-~f--~~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  157 (222)
T 2nyv_A           81 YTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLSG-YF--DLIVGGDTFGEKKPSPTPVLKTLEILGEEPE  157 (222)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG-GC--SEEECTTSSCTTCCTTHHHHHHHHHHTCCGG
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCHH-Hh--eEEEecCcCCCCCCChHHHHHHHHHhCCCch
Confidence            367899999999999765 9999999999999999999886433 56  56676665432  1    1222334455788


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      ++++|+|+..
T Consensus       158 ~~~~vGD~~~  167 (222)
T 2nyv_A          158 KALIVGDTDA  167 (222)
T ss_dssp             GEEEEESSHH
T ss_pred             hEEEECCCHH
Confidence            9999999963

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=96.04  E-value=0.0066  Score=50.21  Aligned_cols=79  Identities=20%  Similarity=0.153  Sum_probs=60.1

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC----CceeccccccccCCceEE
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE----KGKKSGDLVLRQEWGVVI  136 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~----~~~KdL~~l~~~~~~vvi  136 (282)
                      +...||+.++|+.+.+.|.+.|.|++.+.++..+++.++-.. +|  +.+++.+...+    .+.+=+++++-+++++++
T Consensus        83 ~~~~~g~~~~l~~L~~~~~l~i~T~~~~~~~~~~l~~~gl~~-~f--~~i~~~~~~~Kp~p~~~~~~~~~lg~~p~~~~~  159 (210)
T 2ah5_A           83 AQLFPQIIDLLEELSSSYPLYITTTKDTSTAQDMAKNLEIHH-FF--DGIYGSSPEAPHKADVIHQALQTHQLAPEQAII  159 (210)
T ss_dssp             CEECTTHHHHHHHHHTTSCEEEEEEEEHHHHHHHHHHTTCGG-GC--SEEEEECSSCCSHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCchh-he--eeeecCCCCCCCChHHHHHHHHHcCCCcccEEE
Confidence            567899999999998789999999999999999999886543 57  55666651111    233344556668899999


Q ss_pred             EcCChh
Q 041003          137 VDDTEK  142 (282)
Q Consensus       137 vDd~~~  142 (282)
                      |+|++.
T Consensus       160 vgDs~~  165 (210)
T 2ah5_A          160 IGDTKF  165 (210)
T ss_dssp             EESSHH
T ss_pred             ECCCHH
Confidence            999973

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=96.02  E-value=0.0075  Score=50.87  Aligned_cols=78  Identities=9%  Similarity=0.008  Sum_probs=60.6

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+ .+.+.|.|++.+.++..+++.+...  +|  +.+++.+++..      .+.+=+++++-++++
T Consensus       109 ~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~--~f--~~~~~~~~~~~~Kp~p~~~~~~~~~l~~~~~~  184 (240)
T 2hi0_A          109 TGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFPG--SF--DFALGEKSGIRRKPAPDMTSECVKVLGVPRDK  184 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHSTT--TC--SEEEEECTTSCCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CCcCCCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCc--ce--eEEEecCCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence            5678999999999975 5999999999999999999998754  57  66777766532      122334455667899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|.|++.
T Consensus       185 ~~~vGDs~~  193 (240)
T 2hi0_A          185 CVYIGDSEI  193 (240)
T ss_dssp             EEEEESSHH
T ss_pred             eEEEcCCHH
Confidence            999999973

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=95.98  E-value=0.0076  Score=49.32  Aligned_cols=79  Identities=9%  Similarity=0.012  Sum_probs=59.1

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~v  134 (282)
                      +...||+.++|+.+.+.+.++|.|++.+.++..+++.+.-.. +|  +.+++.+++..  +    +.+=++.++-+++++
T Consensus        82 ~~~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~  158 (209)
T 2hdo_A           82 IELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYPFMM-RM--AVTISADDTPKRKPDPLPLLTALEKVNVAPQNA  158 (209)
T ss_dssp             CEECTTHHHHHHHSCTTSEEEEECSSCHHHHHHHHTTSGGGG-GE--EEEECGGGSSCCTTSSHHHHHHHHHTTCCGGGE
T ss_pred             CCcCCCHHHHHHHHHhcCcEEEEeCCCHHHHHHHHHHcChHh-hc--cEEEecCcCCCCCCCcHHHHHHHHHcCCCcccE
Confidence            568999999999997659999999999999999998875433 56  55666665532  1    122334455578899


Q ss_pred             EEEcCChh
Q 041003          135 VIVDDTEK  142 (282)
Q Consensus       135 vivDd~~~  142 (282)
                      ++|+|+..
T Consensus       159 i~vGD~~~  166 (209)
T 2hdo_A          159 LFIGDSVS  166 (209)
T ss_dssp             EEEESSHH
T ss_pred             EEECCChh
Confidence            99999974

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=95.98  E-value=0.0089  Score=49.50  Aligned_cols=78  Identities=12%  Similarity=0.142  Sum_probs=60.9

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      ....|++.++|+.+.+.+.++|.|++.+.++..+++.+.-.. +|  +.+++.+++..      .+.+=++.++-+++++
T Consensus       106 ~~~~~~~~~~l~~l~~g~~~~i~sn~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  182 (240)
T 3qnm_A          106 SGLMPHAKEVLEYLAPQYNLYILSNGFRELQSRKMRSAGVDR-YF--KKIILSEDLGVLKPRPEIFHFALSATQSELRES  182 (240)
T ss_dssp             CCBSTTHHHHHHHHTTTSEEEEEECSCHHHHHHHHHHHTCGG-GC--SEEEEGGGTTCCTTSHHHHHHHHHHTTCCGGGE
T ss_pred             CCcCccHHHHHHHHHcCCeEEEEeCCchHHHHHHHHHcChHh-hc--eeEEEeccCCCCCCCHHHHHHHHHHcCCCcccE
Confidence            567899999999999889999999999999999999886543 56  66777776542      1222344556688999


Q ss_pred             EEEcCCh
Q 041003          135 VIVDDTE  141 (282)
Q Consensus       135 vivDd~~  141 (282)
                      ++|+|++
T Consensus       183 ~~iGD~~  189 (240)
T 3qnm_A          183 LMIGDSW  189 (240)
T ss_dssp             EEEESCT
T ss_pred             EEECCCc
Confidence            9999995

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=95.86  E-value=0.011  Score=48.67  Aligned_cols=79  Identities=13%  Similarity=0.023  Sum_probs=60.3

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      ....|++.++|+.+.+. +.++|.|++...++..+++.+.-.. +|  +.+++.++...      .+.+=++.++-++++
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~l~~~~~~  166 (233)
T 3s6j_A           90 IIALPGAVELLETLDKENLKWCIATSGGIDTATINLKALKLDI-NK--INIVTRDDVSYGKPDPDLFLAAAKKIGAPIDE  166 (233)
T ss_dssp             CEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCCT-TS--SCEECGGGSSCCTTSTHHHHHHHHHTTCCGGG
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchhh-hh--heeeccccCCCCCCChHHHHHHHHHhCCCHHH
Confidence            57899999999999865 9999999999999999999876544 45  55666665432      122333445567899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|+..
T Consensus       167 ~i~iGD~~~  175 (233)
T 3s6j_A          167 CLVIGDAIW  175 (233)
T ss_dssp             EEEEESSHH
T ss_pred             EEEEeCCHH
Confidence            999999984

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=95.82  E-value=0.012  Score=48.71  Aligned_cols=78  Identities=9%  Similarity=0.030  Sum_probs=61.0

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceecccccc-ccCCc
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVL-RQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~-~~~~~  133 (282)
                      ....||+.++|+.+.+.+.++|.|++.+.++..+++.++-.. +|  +.+++.+++..      .+.+=++.++ -++++
T Consensus       102 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~  178 (238)
T 3ed5_A          102 HQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFP-FF--KDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEH  178 (238)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHTTCGG-GC--SEEEEGGGTTSCTTCHHHHHHHHHTSTTCCGGG
T ss_pred             CCCCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcChHh-hh--heEEEecccCCCCCChHHHHHHHHHcCCCChhH
Confidence            567899999999998669999999999999999998875443 56  66777766542      1223445667 68899


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|+.
T Consensus       179 ~i~vGD~~  186 (238)
T 3ed5_A          179 TLIIGDSL  186 (238)
T ss_dssp             EEEEESCT
T ss_pred             eEEECCCc
Confidence            99999996

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=95.76  E-value=0.011  Score=50.05  Aligned_cols=79  Identities=9%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      +..+||+.++|+.+.+. +.++|.|++.+.++..+++.+.-.. +|  +.+++.+++..  +    +.+=++.++-+.++
T Consensus       113 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~gl~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  189 (243)
T 2hsz_A          113 SRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGIDH-LF--SEMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQ  189 (243)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG-GC--SEEECTTTSSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHcCchh-eE--EEEEecccCCCCCcCHHHHHHHHHHhCcChhh
Confidence            46889999999999765 9999999999999999999886443 56  56676665532  1    11123344557889


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|+..
T Consensus       190 ~~~vGD~~~  198 (243)
T 2hsz_A          190 ILFVGDSQN  198 (243)
T ss_dssp             EEEEESSHH
T ss_pred             EEEEcCCHH
Confidence            999999973

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=95.72  E-value=0.013  Score=49.47  Aligned_cols=101  Identities=16%  Similarity=0.017  Sum_probs=62.5

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~   89 (282)
                      -..+++||||||+.+...  .. ..                   ...-.....++++  +|+.+.+ .+.+.|.|+..+.
T Consensus        49 ik~viFDlDGTL~Ds~~~--~~-~~-------------------~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~  104 (211)
T 3ij5_A           49 IRLLICDVDGVMSDGLIY--MG-NQ-------------------GEELKAFNVRDGY--GIRCLITSDIDVAIITGRRAK  104 (211)
T ss_dssp             CSEEEECCTTTTSSSEEE--EE-TT-------------------SCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSCCH
T ss_pred             CCEEEEeCCCCEECCHHH--Hh-hh-------------------hHHHHHhccchHH--HHHHHHHCCCEEEEEeCCCHH
Confidence            357899999999998532  11 00                   0001122344555  8888865 5999999999999


Q ss_pred             HHHHHHhhhcCCCcccccccEEEccCCCCCce-eccccccccCCceEEEcCChh
Q 041003           90 YAMMMAKLLNPKCEYHISSRLITREDFKEKGK-KSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        90 Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~-KdL~~l~~~~~~vvivDd~~~  142 (282)
                      .|..+++.+.-.. +| .. +    ......+ +=++.++-+.+.+++|-|+..
T Consensus       105 ~~~~~l~~lgi~~-~f-~~-~----k~K~~~l~~~~~~lg~~~~~~~~vGDs~n  151 (211)
T 3ij5_A          105 LLEDRANTLGITH-LY-QG-Q----SDKLVAYHELLATLQCQPEQVAYIGDDLI  151 (211)
T ss_dssp             HHHHHHHHHTCCE-EE-CS-C----SSHHHHHHHHHHHHTCCGGGEEEEECSGG
T ss_pred             HHHHHHHHcCCch-hh-cc-c----CChHHHHHHHHHHcCcCcceEEEEcCCHH
Confidence            9999999987543 34 21 1    0000111 112234446788999988874

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=95.68  E-value=0.0084  Score=50.39  Aligned_cols=78  Identities=14%  Similarity=0.032  Sum_probs=59.1

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+. +.++|.|++.+.++..+++.+.-.. +|  +.+++.++...  +    +.+=++.++-++++
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~  169 (241)
T 2hoq_A           93 LREVPGARKVLIRLKELGYELGIITDGNPVKQWEKILRLELDD-FF--EHVIISDFEGVKKPHPKIFKKALKAFNVKPEE  169 (241)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTTCGG-GC--SEEEEGGGGTCCTTCHHHHHHHHHHHTCCGGG
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcCcHh-hc--cEEEEeCCCCCCCCCHHHHHHHHHHcCCCccc
Confidence            45789999999999865 9999999999999999999886443 56  66677665532  1    12223445557889


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|++
T Consensus       170 ~i~iGD~~  177 (241)
T 2hoq_A          170 ALMVGDRL  177 (241)
T ss_dssp             EEEEESCT
T ss_pred             EEEECCCc
Confidence            99999997

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=95.66  E-value=0.014  Score=51.20  Aligned_cols=115  Identities=17%  Similarity=0.095  Sum_probs=66.7

Q ss_pred             cCCCeeEEEeCCCceeeeeccC--------ccch-hhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cC
Q 041003            8 RQKKLHLVLDLDQTLPHAVDID--------ILAS-KDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KM   77 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~--------~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~   77 (282)
                      ..+|+.+|||+||||+....--        ...+ .+.....              .   -....-||+.+||+.+. .-
T Consensus        55 ~~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~--------------~---~~~~~~pG~~ell~~L~~~G  117 (262)
T 3ocu_A           55 KGKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVD--------------A---RQSRAVPGAVEFNNYVNSHN  117 (262)
T ss_dssp             TTCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHH--------------H---TCCEECTTHHHHHHHHHHTT
T ss_pred             CCCCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHH--------------c---CCCCCCccHHHHHHHHHHCC
Confidence            3567899999999999986310        0000 0000000              0   12568899999999996 45


Q ss_pred             ceEEEEcCCcHH----HHHHHHhhhcCCCcccccccEEEccCCCCCceeccc--cccc-cCCceEEEcCChhhh
Q 041003           78 YDIYLCTTRIRS----YAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGD--LVLR-QEWGVVIVDDTEKVW  144 (282)
Q Consensus        78 yei~i~T~~~~~----Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~--~l~~-~~~~vvivDd~~~~~  144 (282)
                      ++|+|-|+....    -+..-++.+.-.. ++ .+.++.|+....   |.-.  .|.. +.+.++.|.|+..=+
T Consensus       118 ~ki~ivTgR~~~~~r~~T~~~L~~lGi~~-~~-~~~Lilr~~~~~---K~~~r~~l~~~Gy~iv~~vGD~~~Dl  186 (262)
T 3ocu_A          118 GKVFYVTNRKDSTEKSGTIDDMKRLGFNG-VE-ESAFYLKKDKSA---KAARFAEIEKQGYEIVLYVGDNLDDF  186 (262)
T ss_dssp             EEEEEEEEEETTTTHHHHHHHHHHHTCSC-CS-GGGEEEESSCSC---CHHHHHHHHHTTEEEEEEEESSGGGG
T ss_pred             CeEEEEeCCCccchHHHHHHHHHHcCcCc-cc-ccceeccCCCCC---hHHHHHHHHhcCCCEEEEECCChHHh
Confidence            999999987654    4445555553221 12 226676765432   2211  1211 245688898886433

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=95.52  E-value=0.013  Score=48.75  Aligned_cols=79  Identities=10%  Similarity=0.059  Sum_probs=59.7

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      ....||+.++|+.+.+. +.++|.|++.+.++..+++.++-.. +|  +.+++.+++..      .+.+=+++++-++++
T Consensus       103 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  179 (237)
T 4ex6_A          103 RLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLDT-RL--TVIAGDDSVERGKPHPDMALHVARGLGIPPER  179 (237)
T ss_dssp             GGBCTTHHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGGG-TC--SEEECTTTSSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CccCCCHHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCchh-he--eeEEeCCCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence            35789999999999875 9999999999999999999886443 46  55666666532      122233445568899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|+..
T Consensus       180 ~i~vGD~~~  188 (237)
T 4ex6_A          180 CVVIGDGVP  188 (237)
T ss_dssp             EEEEESSHH
T ss_pred             eEEEcCCHH
Confidence            999999983

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=95.48  E-value=0.011  Score=48.36  Aligned_cols=80  Identities=9%  Similarity=0.096  Sum_probs=57.4

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC-------C--CceeccccccccC
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK-------E--KGKKSGDLVLRQE  131 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~-------~--~~~KdL~~l~~~~  131 (282)
                      +..+||+.++|+.+.+.+.++|.|++.+.++..+++.++-.. +| .+.+.+.++..       .  .+.+-++.++...
T Consensus        68 ~~~~~g~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~gl~~-~f-~~~~~~~~~~~~~~~~~p~p~~~~~~l~~l~~~~  145 (206)
T 1rku_A           68 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LL-CHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLY  145 (206)
T ss_dssp             CCCCTTHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTCCC-EE-EEEEEECTTSCEEEEECCSSSHHHHHHHHHHHTT
T ss_pred             cCCCccHHHHHHHHHhcCcEEEEECChHHHHHHHHHHcCCcc-ee-cceeEEcCCceEEeeecCCCchHHHHHHHHHhcC
Confidence            467999999999998669999999999999999999987654 45 34455433321       1  1112233444467


Q ss_pred             CceEEEcCChh
Q 041003          132 WGVVIVDDTEK  142 (282)
Q Consensus       132 ~~vvivDd~~~  142 (282)
                      +++++|+|++.
T Consensus       146 ~~~~~iGD~~~  156 (206)
T 1rku_A          146 YRVIAAGDSYN  156 (206)
T ss_dssp             CEEEEEECSST
T ss_pred             CEEEEEeCChh
Confidence            78999999873

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=95.39  E-value=0.055  Score=47.32  Aligned_cols=113  Identities=19%  Similarity=0.101  Sum_probs=65.4

Q ss_pred             CCeeEEEeCCCceeeeeccC--------ccch-hhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-Cce
Q 041003           10 KKLHLVLDLDQTLPHAVDID--------ILAS-KDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYD   79 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~--------~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~ye   79 (282)
                      +|+.+|||+||||+..+.--        ...+ .+....              ..+   ....-||+.+||+.+.+ -++
T Consensus        57 ~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv--------------~~g---~~~~~pg~~ell~~L~~~G~~  119 (260)
T 3pct_A           57 KKKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWV--------------DAR---QSAAIPGAVEFSNYVNANGGT  119 (260)
T ss_dssp             -CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHH--------------HTT---CCEECTTHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCccCcCChhHHHhhcccCCCCCHHHHHHHH--------------HcC---CCCCCccHHHHHHHHHHCCCe
Confidence            45699999999999986320        0000 000000              011   25688999999999974 599


Q ss_pred             EEEEcCCcHH----HHHHHHhhhcCCCcccccccEEEccCCCCCceecc--ccccc-cCCceEEEcCChhhh
Q 041003           80 IYLCTTRIRS----YAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSG--DLVLR-QEWGVVIVDDTEKVW  144 (282)
Q Consensus        80 i~i~T~~~~~----Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL--~~l~~-~~~~vvivDd~~~~~  144 (282)
                      |+|-|+....    -+..-++.+.-.. ++ ...++-|.....   |.-  ..|.. +.+.++.|.|+..=+
T Consensus       120 i~ivTgR~~~~~r~~T~~~L~~lGi~~-~~-~~~Lilr~~~~~---K~~~r~~L~~~gy~iv~~iGD~~~Dl  186 (260)
T 3pct_A          120 MFFVSNRRDDVEKAGTVDDMKRLGFTG-VN-DKTLLLKKDKSN---KSVRFKQVEDMGYDIVLFVGDNLNDF  186 (260)
T ss_dssp             EEEEEEEETTTSHHHHHHHHHHHTCCC-CS-TTTEEEESSCSS---SHHHHHHHHTTTCEEEEEEESSGGGG
T ss_pred             EEEEeCCCccccHHHHHHHHHHcCcCc-cc-cceeEecCCCCC---hHHHHHHHHhcCCCEEEEECCChHHc
Confidence            9999987654    5555555554322 12 225666654322   211  11222 456688898886433

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=95.28  E-value=0.017  Score=50.02  Aligned_cols=79  Identities=8%  Similarity=0.044  Sum_probs=58.6

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcC--CCcccccccEEEccCCCC-----CceeccccccccCC
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNP--KCEYHISSRLITREDFKE-----KGKKSGDLVLRQEW  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp--~~~~f~~~rv~~r~~~~~-----~~~KdL~~l~~~~~  132 (282)
                      +...||+.++|+.+. +.+.++|.|++.+.++..+++.++-  -..+|  +.+++. ++..     .+.+-+++++-+++
T Consensus       129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~~~~l~~~f--d~i~~~-~~~~KP~p~~~~~~~~~lg~~p~  205 (261)
T 1yns_A          129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDILELV--DGHFDT-KIGHKVESESYRKIADSIGCSTN  205 (261)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBCCGGGC--SEEECG-GGCCTTCHHHHHHHHHHHTSCGG
T ss_pred             cccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhhcccChHhhc--cEEEec-CCCCCCCHHHHHHHHHHhCcCcc
Confidence            578899999999996 5699999999999999999887652  22367  566766 4332     12333445566789


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      ++++|+|+..
T Consensus       206 ~~l~VgDs~~  215 (261)
T 1yns_A          206 NILFLTDVTR  215 (261)
T ss_dssp             GEEEEESCHH
T ss_pred             cEEEEcCCHH
Confidence            9999999963

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=95.21  E-value=0.038  Score=45.56  Aligned_cols=79  Identities=18%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             EEecccHHHHHHHHhcC--ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCC-------ceecccccc--c
Q 041003           61 VKVRSYIRKFLKKASKM--YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEK-------GKKSGDLVL--R  129 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~--yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~-------~~KdL~~l~--~  129 (282)
                      +...||+.++|+.+.+.  +.+.|.|++.+.++..+++.+.... +|  +.+++.++....       +.+=++.++  -
T Consensus        92 ~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~~k~~~~~~~~~~~~lg~~~  168 (234)
T 2hcf_A           92 ITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDH-YF--PFGAFADDALDRNELPHIALERARRMTGANY  168 (234)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCST-TC--SCEECTTTCSSGGGHHHHHHHHHHHHHCCCC
T ss_pred             CCcCCCHHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCCchh-hc--CcceecCCCcCccchHHHHHHHHHHHhCCCC
Confidence            57889999999999875  9999999999999999999886654 56  334444443211       011133455  4


Q ss_pred             cCCceEEEcCChh
Q 041003          130 QEWGVVIVDDTEK  142 (282)
Q Consensus       130 ~~~~vvivDd~~~  142 (282)
                      +++++++|+|++.
T Consensus       169 ~~~~~i~iGD~~~  181 (234)
T 2hcf_A          169 SPSQIVIIGDTEH  181 (234)
T ss_dssp             CGGGEEEEESSHH
T ss_pred             CcccEEEECCCHH
Confidence            7889999999984

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=95.18  E-value=0.012  Score=47.89  Aligned_cols=76  Identities=16%  Similarity=0.074  Sum_probs=56.4

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~v  134 (282)
                      +...||+.+ |+.+.+.+.++|.|++.+.++..+++.++-.. +|  +.+++.+++..  +    +.+=++.++  ++++
T Consensus        73 ~~~~~~~~~-l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~--~~~~  146 (201)
T 2w43_A           73 LKAYEDTKY-LKEISEIAEVYALSNGSINEVKQHLERNGLLR-YF--KGIFSAESVKEYKPSPKVYKYFLDSIG--AKEA  146 (201)
T ss_dssp             CEECGGGGG-HHHHHHHSEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEEGGGGTCCTTCHHHHHHHHHHHT--CSCC
T ss_pred             cccCCChHH-HHHHHhCCeEEEEeCcCHHHHHHHHHHCCcHH-hC--cEEEehhhcCCCCCCHHHHHHHHHhcC--CCcE
Confidence            467899999 99996449999999999999999999886543 56  56777766532  1    122233344  7889


Q ss_pred             EEEcCChh
Q 041003          135 VIVDDTEK  142 (282)
Q Consensus       135 vivDd~~~  142 (282)
                      ++|+|++.
T Consensus       147 ~~vGD~~~  154 (201)
T 2w43_A          147 FLVSSNAF  154 (201)
T ss_dssp             EEEESCHH
T ss_pred             EEEeCCHH
Confidence            99999984

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=95.07  E-value=0.018  Score=47.55  Aligned_cols=76  Identities=12%  Similarity=0.011  Sum_probs=58.4

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-Ccee-----c---cccccccC
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-KGKK-----S---GDLVLRQE  131 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~K-----d---L~~l~~~~  131 (282)
                      +...|++.++|+.+.+.+.++|.|++.+.++..+++.|.   .+|  +.+++.++... +.-+     -   ++.++-++
T Consensus        98 ~~~~~~~~~~l~~l~~~~~~~i~tn~~~~~~~~~l~~l~---~~f--d~i~~~~~~~~~KP~~~~~~~~l~~~~~lgi~~  172 (240)
T 3smv_A           98 WPAFPDTVEALQYLKKHYKLVILSNIDRNEFKLSNAKLG---VEF--DHIITAQDVGSYKPNPNNFTYMIDALAKAGIEK  172 (240)
T ss_dssp             CCBCTTHHHHHHHHHHHSEEEEEESSCHHHHHHHHTTTC---SCC--SEEEEHHHHTSCTTSHHHHHHHHHHHHHTTCCG
T ss_pred             CCCCCcHHHHHHHHHhCCeEEEEeCCChhHHHHHHHhcC---Ccc--CEEEEccccCCCCCCHHHHHHHHHHHHhcCCCc
Confidence            467899999999998889999999999999999988865   356  66677665432 1111     2   55666788


Q ss_pred             CceEEEcCCh
Q 041003          132 WGVVIVDDTE  141 (282)
Q Consensus       132 ~~vvivDd~~  141 (282)
                      +++++|+|+.
T Consensus       173 ~~~~~vGD~~  182 (240)
T 3smv_A          173 KDILHTAESL  182 (240)
T ss_dssp             GGEEEEESCT
T ss_pred             hhEEEECCCc
Confidence            9999999985

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=95.04  E-value=0.014  Score=48.26  Aligned_cols=78  Identities=17%  Similarity=0.034  Sum_probs=59.0

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~v  134 (282)
                      ....|++.++|+.+.+.+.++|+|++...++..+++.+.-.. +|  +.+++.+++..  +    +.+=++.++-+++++
T Consensus        99 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~~~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  175 (234)
T 3u26_A           99 GELYPEVVEVLKSLKGKYHVGMITDSDTEQAMAFLDALGIKD-LF--DSITTSEEAGFFKPHPRIFELALKKAGVKGEEA  175 (234)
T ss_dssp             CCBCTTHHHHHHHHTTTSEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGE
T ss_pred             CCcCcCHHHHHHHHHhCCcEEEEECCCHHHHHHHHHHcCcHH-Hc--ceeEeccccCCCCcCHHHHHHHHHHcCCCchhE
Confidence            457899999999998669999999999999999998876543 56  56676655431  1    222334455678999


Q ss_pred             EEEcCCh
Q 041003          135 VIVDDTE  141 (282)
Q Consensus       135 vivDd~~  141 (282)
                      ++|+|+.
T Consensus       176 ~~vGD~~  182 (234)
T 3u26_A          176 VYVGDNP  182 (234)
T ss_dssp             EEEESCT
T ss_pred             EEEcCCc
Confidence            9999996

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=94.95  E-value=0.016  Score=47.03  Aligned_cols=80  Identities=13%  Similarity=0.085  Sum_probs=57.9

Q ss_pred             EecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCceE
Q 041003           62 KVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWGVV  135 (282)
Q Consensus        62 ~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~vv  135 (282)
                      ...||+.++|+.+.+...++|.|++.+.++..+++.++-.. +|  +.+++.+++..  +    +.+-++.++-++++++
T Consensus        86 ~~~~~~~~~l~~l~~~g~~~i~s~~~~~~~~~~l~~~~~~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  162 (200)
T 3cnh_A           86 QPRPEVLALARDLGQRYRMYSLNNEGRDLNEYRIRTFGLGE-FL--LAFFTSSALGVMKPNPAMYRLGLTLAQVRPEEAV  162 (200)
T ss_dssp             CBCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHHTGGG-TC--SCEEEHHHHSCCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             ccCccHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHhCCHHH-hc--ceEEeecccCCCCCCHHHHHHHHHHcCCCHHHeE
Confidence            47899999999997655999999999999999998875433 46  55666554321  1    1223344555788999


Q ss_pred             EEcCChhhh
Q 041003          136 IVDDTEKVW  144 (282)
Q Consensus       136 ivDd~~~~~  144 (282)
                      +|+|++.-.
T Consensus       163 ~vgD~~~Di  171 (200)
T 3cnh_A          163 MVDDRLQNV  171 (200)
T ss_dssp             EEESCHHHH
T ss_pred             EeCCCHHHH
Confidence            999998533

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=94.85  E-value=0.008  Score=50.07  Aligned_cols=65  Identities=14%  Similarity=-0.057  Sum_probs=42.4

Q ss_pred             HHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCcee-ccccccccCCceEEEcCChh
Q 041003           71 LKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKK-SGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        71 L~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~K-dL~~l~~~~~~vvivDd~~~  142 (282)
                      |+.+.+ .+.+.|.|++.+..+..+++.+.-.. +| ...     ......++ =++.++-+++++++|.|+..
T Consensus        61 l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~-~~-~~~-----k~k~~~~~~~~~~~~~~~~~~~~vGD~~n  127 (195)
T 3n07_A           61 VKALMNAGIEIAIITGRRSQIVENRMKALGISL-IY-QGQ-----DDKVQAYYDICQKLAIAPEQTGYIGDDLI  127 (195)
T ss_dssp             HHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCE-EE-CSC-----SSHHHHHHHHHHHHCCCGGGEEEEESSGG
T ss_pred             HHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcE-Ee-eCC-----CCcHHHHHHHHHHhCCCHHHEEEEcCCHH
Confidence            777764 59999999999999999999986543 33 111     00000111 12233446788999999874

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=94.82  E-value=0.0063  Score=51.22  Aligned_cols=36  Identities=17%  Similarity=0.225  Sum_probs=30.2

Q ss_pred             ecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhh
Q 041003           63 VRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLL   98 (282)
Q Consensus        63 ~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~l   98 (282)
                      ..|++.++|+.+.+ -+.++|.|++.+..+..+++.|
T Consensus        89 ~~~~~~e~l~~L~~~G~~l~ivTn~~~~~~~~~l~~l  125 (211)
T 2b82_A           89 PKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTL  125 (211)
T ss_dssp             ECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHHH
T ss_pred             CcHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH
Confidence            57899999999975 5999999999888777777664

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=94.60  E-value=0.021  Score=47.86  Aligned_cols=77  Identities=8%  Similarity=-0.048  Sum_probs=58.0

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      +...|++.++|+.+.+.+.++|.|++.+.++..+++.+.-.   |  +.+++.+....      .+.+=++.++-+++++
T Consensus       119 ~~~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~g~~---f--~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  193 (254)
T 3umc_A          119 LRPWPDTLAGMHALKADYWLAALSNGNTALMLDVARHAGLP---W--DMLLCADLFGHYKPDPQVYLGACRLLDLPPQEV  193 (254)
T ss_dssp             CEECTTHHHHHHHHTTTSEEEECCSSCHHHHHHHHHHHTCC---C--SEECCHHHHTCCTTSHHHHHHHHHHHTCCGGGE
T ss_pred             CCCCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcCCC---c--ceEEeecccccCCCCHHHHHHHHHHcCCChHHE
Confidence            46789999999999888999999999999999999988654   6  55555554322      1222344555678999


Q ss_pred             EEEcCChh
Q 041003          135 VIVDDTEK  142 (282)
Q Consensus       135 vivDd~~~  142 (282)
                      ++|+|+..
T Consensus       194 ~~iGD~~~  201 (254)
T 3umc_A          194 MLCAAHNY  201 (254)
T ss_dssp             EEEESCHH
T ss_pred             EEEcCchH
Confidence            99999963

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=94.52  E-value=0.024  Score=47.95  Aligned_cols=80  Identities=6%  Similarity=-0.063  Sum_probs=59.9

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC-C------CceeccccccccCC
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK-E------KGKKSGDLVLRQEW  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~-~------~~~KdL~~l~~~~~  132 (282)
                      ....|++.++|+.+.+ .+.++|.|++...++..+++.++-.. +| ...+++.++.. .      .+.+=++.++-+++
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~-~f-~~~i~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~  186 (259)
T 4eek_A          109 VTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLTE-LA-GEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPE  186 (259)
T ss_dssp             CEECTTHHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTTCHH-HH-CSCEECGGGGTTCCTTSSHHHHHHHHHTTCCGG
T ss_pred             CCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcChHh-hc-cceEEeHhhcCcCCCCChHHHHHHHHHcCCCHH
Confidence            5789999999999976 59999999999999999999876443 56 33267666554 2      11223344556789


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      ++++|+|+..
T Consensus       187 ~~i~iGD~~~  196 (259)
T 4eek_A          187 RCVVIEDSVT  196 (259)
T ss_dssp             GEEEEESSHH
T ss_pred             HEEEEcCCHH
Confidence            9999999984

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=94.42  E-value=0.021  Score=52.74  Aligned_cols=80  Identities=14%  Similarity=0.054  Sum_probs=59.0

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCccccc-ccEEEccCC-------------CC----Cce
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHIS-SRLITREDF-------------KE----KGK  121 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~-~rv~~r~~~-------------~~----~~~  121 (282)
                      +...||+.++|+.+.+. +.++|.|++.+.++..+++.++-.. +| . +.+++.++.             .+    .+.
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL~~-~F-d~~~Ivs~ddv~~~~~~~~~~kp~~KP~P~~~~  291 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLP-YF-EADFIATASDVLEAENMYPQARPLGKPNPFSYI  291 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCGG-GS-CGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHH
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCChH-hc-CCCEEEecccccccccccccccCCCCCCHHHHH
Confidence            56789999999999865 9999999999999999999886443 67 3 267776542             22    122


Q ss_pred             ecccccc--------------ccCCceEEEcCChh
Q 041003          122 KSGDLVL--------------RQEWGVVIVDDTEK  142 (282)
Q Consensus       122 KdL~~l~--------------~~~~~vvivDd~~~  142 (282)
                      +-+..++              -+++++++|+|++.
T Consensus       292 ~a~~~lg~~~~~~~~~~~~~~v~p~e~l~VGDs~~  326 (384)
T 1qyi_A          292 AALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLA  326 (384)
T ss_dssp             HHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHH
T ss_pred             HHHHHcCCccccccccccccCCCCcCeEEEcCCHH
Confidence            2334444              35789999999983

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=94.35  E-value=0.066  Score=48.79  Aligned_cols=55  Identities=20%  Similarity=0.179  Sum_probs=43.8

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc-
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI-   87 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~-   87 (282)
                      ++..+++|+||||++...                                   .=||..++|+.+.+ -..+++.|+++ 
T Consensus        12 ~~~~~l~D~DGvl~~g~~-----------------------------------~~p~a~~~l~~l~~~g~~~~~vTNn~~   56 (352)
T 3kc2_A           12 KKIAFAFDIDGVLFRGKK-----------------------------------PIAGASDALKLLNRNKIPYILLTNGGG   56 (352)
T ss_dssp             CCEEEEECCBTTTEETTE-----------------------------------ECTTHHHHHHHHHHTTCCEEEECSCCS
T ss_pred             cCCEEEEECCCeeEcCCe-----------------------------------eCcCHHHHHHHHHHCCCEEEEEeCCCC
Confidence            678899999999988531                                   23899999999964 58899999875 


Q ss_pred             ---HHHHHHHHhhhc
Q 041003           88 ---RSYAMMMAKLLN   99 (282)
Q Consensus        88 ---~~Ya~~v~~~ld   99 (282)
                         +.||+.+.+.+.
T Consensus        57 ~~~~~~~~~l~~~lg   71 (352)
T 3kc2_A           57 FSERARTEFISSKLD   71 (352)
T ss_dssp             SCHHHHHHHHHHHHT
T ss_pred             CCchHHHHHHHHhcC
Confidence               788888876543

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=94.16  E-value=0.04  Score=45.61  Aligned_cols=76  Identities=16%  Similarity=0.050  Sum_probs=49.3

Q ss_pred             EEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~  132 (282)
                      .+...||+.++|+.+.+. +.++|.|++.+ ++..+++.++-.. +|  +.+++.+++..  +    +.+-+++++.++ 
T Consensus        93 ~~~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~~~~~l~~~gl~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~-  167 (220)
T 2zg6_A           93 EAFLYDDTLEFLEGLKSNGYKLALVSNASP-RVKTLLEKFDLKK-YF--DALALSYEIKAVKPNPKIFGFALAKVGYPA-  167 (220)
T ss_dssp             EEEECTTHHHHHHHHHTTTCEEEECCSCHH-HHHHHHHHHTCGG-GC--SEEC-----------CCHHHHHHHHHCSSE-
T ss_pred             CceECcCHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHhcCcHh-He--eEEEeccccCCCCCCHHHHHHHHHHcCCCe-
Confidence            578899999999999875 99999999977 5888888876443 56  55666665432  1    112223333333 


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                        ++|+|++.
T Consensus       168 --~~vgD~~~  175 (220)
T 2zg6_A          168 --VHVGDIYE  175 (220)
T ss_dssp             --EEEESSCC
T ss_pred             --EEEcCCch
Confidence              89999875

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.10  E-value=0.038  Score=45.16  Aligned_cols=78  Identities=10%  Similarity=0.039  Sum_probs=57.6

Q ss_pred             EEecccHHHHHHHHhc--CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-CceeccccccccCCceEEE
Q 041003           61 VKVRSYIRKFLKKASK--MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIV  137 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~--~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vviv  137 (282)
                      +...|++.++|+.+.+  .+.++|.|++.+.++..+++.+.-.. +|  +.+++...... .+.+=++.++-+++++++|
T Consensus       104 ~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l~~~~~~~-~f--~~~~~~~kpk~~~~~~~~~~lgi~~~~~i~i  180 (234)
T 3ddh_A          104 IELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLSP-YF--DHIEVMSDKTEKEYLRLLSILQIAPSELLMV  180 (234)
T ss_dssp             CCBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHTCGG-GC--SEEEEESCCSHHHHHHHHHHHTCCGGGEEEE
T ss_pred             CCcCccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhCcHh-hh--heeeecCCCCHHHHHHHHHHhCCCcceEEEE
Confidence            4678999999999987  69999999999999999999876543 46  44555433221 1222334455688999999


Q ss_pred             cCCh
Q 041003          138 DDTE  141 (282)
Q Consensus       138 Dd~~  141 (282)
                      +|+.
T Consensus       181 GD~~  184 (234)
T 3ddh_A          181 GNSF  184 (234)
T ss_dssp             ESCC
T ss_pred             CCCc
Confidence            9995

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=94.09  E-value=0.04  Score=46.38  Aligned_cols=77  Identities=10%  Similarity=0.123  Sum_probs=54.1

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC----------C---C-ce----
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK----------E---K-GK----  121 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~----------~---~-~~----  121 (282)
                      +..+||+.++|+.+.+ .+.++|.|++.+.++..+++.|.+.      +.+++.+...          +   . ..    
T Consensus        76 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~~l~~~------~~v~~~~~~~~~~~~~~~~~kp~p~~~~~~~~  149 (236)
T 2fea_A           76 AKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEK------DRIYCNHASFDNDYIHIDWPHSCKGTCSNQCG  149 (236)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSCG------GGEEEEEEECSSSBCEEECTTCCCTTCCSCCS
T ss_pred             CCCCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHhcCCCC------CeEEeeeeEEcCCceEEecCCCCccccccccC
Confidence            6789999999999975 5999999999999999999844332      2334433211          1   0 11    


Q ss_pred             ----eccccccccCCceEEEcCChhh
Q 041003          122 ----KSGDLVLRQEWGVVIVDDTEKV  143 (282)
Q Consensus       122 ----KdL~~l~~~~~~vvivDd~~~~  143 (282)
                          +-++.++.+.+++++|+|+..-
T Consensus       150 ~~K~~~~~~~~~~~~~~~~vGDs~~D  175 (236)
T 2fea_A          150 CCKPSVIHELSEPNQYIIMIGDSVTD  175 (236)
T ss_dssp             SCHHHHHHHHCCTTCEEEEEECCGGG
T ss_pred             CcHHHHHHHHhccCCeEEEEeCChHH
Confidence                3344555678899999999743

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=93.99  E-value=0.02  Score=47.79  Aligned_cols=77  Identities=12%  Similarity=-0.038  Sum_probs=56.8

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      +...|++.++|+.+.+.+.++|.|++.+.++..+++.+.-.   |  +.+++.+++..      .+.+=++.++-+.+++
T Consensus       115 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~~~---f--~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  189 (254)
T 3umg_A          115 LTPWPDSVPGLTAIKAEYIIGPLSNGNTSLLLDMAKNAGIP---W--DVIIGSDINRKYKPDPQAYLRTAQVLGLHPGEV  189 (254)
T ss_dssp             CCBCTTHHHHHHHHHHHSEEEECSSSCHHHHHHHHHHHTCC---C--SCCCCHHHHTCCTTSHHHHHHHHHHTTCCGGGE
T ss_pred             CcCCcCHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHhCCCC---e--eEEEEcCcCCCCCCCHHHHHHHHHHcCCChHHE
Confidence            45689999999999877999999999999999999988653   5  44454444321      1222334455678999


Q ss_pred             EEEcCChh
Q 041003          135 VIVDDTEK  142 (282)
Q Consensus       135 vivDd~~~  142 (282)
                      ++|+|+..
T Consensus       190 ~~iGD~~~  197 (254)
T 3umg_A          190 MLAAAHNG  197 (254)
T ss_dssp             EEEESCHH
T ss_pred             EEEeCChH
Confidence            99999973

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=93.94  E-value=0.036  Score=47.37  Aligned_cols=77  Identities=12%  Similarity=-0.077  Sum_probs=56.8

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...||+.++|+.+.+. +.++|.|++.+. +..+++.+.-.. +|  +.+++.+++..      .+.+-++.++-++++
T Consensus       105 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~-~~~~l~~~gl~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~  180 (263)
T 3k1z_A          105 WQVLDGAEDTLRECRTRGLRLAVISNFDRR-LEGILGGLGLRE-HF--DFVLTSEAAGWPKPDPRIFQEALRLAHMEPVV  180 (263)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEEESCCTT-HHHHHHHTTCGG-GC--SCEEEHHHHSSCTTSHHHHHHHHHHHTCCGGG
T ss_pred             ceECcCHHHHHHHHHhCCCcEEEEeCCcHH-HHHHHHhCCcHH-hh--hEEEeecccCCCCCCHHHHHHHHHHcCCCHHH
Confidence            57899999999999865 999999998874 677888776443 56  56676665432      122334455668899


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|++
T Consensus       181 ~~~vGD~~  188 (263)
T 3k1z_A          181 AAHVGDNY  188 (263)
T ss_dssp             EEEEESCH
T ss_pred             EEEECCCc
Confidence            99999996

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=93.72  E-value=0.093  Score=42.60  Aligned_cols=79  Identities=8%  Similarity=0.001  Sum_probs=57.1

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      ....|++.++|+.+.+. +.++|.|++.+.++..+++.++-.. +|  +.+++.++...  +    +.+=++.++-+.++
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~~-~~--~~~~~~~~~~~~kp~~~~~~~~~~~~~i~~~~  169 (226)
T 1te2_A           93 RPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRD-SF--DALASAEKLPYSKPHPQVYLDCAAKLGVDPLT  169 (226)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEECTTSSCCTTSTHHHHHHHHHHTSCGGG
T ss_pred             CCcCccHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcCcHh-hC--cEEEeccccCCCCCChHHHHHHHHHcCCCHHH
Confidence            45789999999999764 9999999999999999998875443 45  55566555432  1    11122334557889


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      ++.|+|+..
T Consensus       170 ~i~iGD~~n  178 (226)
T 1te2_A          170 CVALEDSVN  178 (226)
T ss_dssp             EEEEESSHH
T ss_pred             eEEEeCCHH
Confidence            999999984

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=93.68  E-value=0.081  Score=40.56  Aligned_cols=62  Identities=24%  Similarity=0.264  Sum_probs=41.0

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcHHH-
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSY-   90 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Y-   90 (282)
                      .+++||||||+.+.... ..                           -+...|+..+.|+++. +-..+++.|...... 
T Consensus         3 ~i~~DlDGTL~~~~~~~-~~---------------------------~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~~~~~   54 (126)
T 1xpj_A            3 KLIVDLDGTLTQANTSD-YR---------------------------NVLPRLDVIEQLREYHQLGFEIVISTARNMRTY   54 (126)
T ss_dssp             EEEECSTTTTBCCCCSC-GG---------------------------GCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTT
T ss_pred             EEEEecCCCCCCCCCCc-cc---------------------------cCCCCHHHHHHHHHHHhCCCeEEEEeCCChhhc
Confidence            57899999999864310 00                           0124577888888885 458888888665432 


Q ss_pred             -----------HHHHHhhhcCCC
Q 041003           91 -----------AMMMAKLLNPKC  102 (282)
Q Consensus        91 -----------a~~v~~~ldp~~  102 (282)
                                 +..+++.+...+
T Consensus        55 nG~~~~~~~~~~~~i~~~~~~~~   77 (126)
T 1xpj_A           55 EGNVGKINIHTLPIITEWLDKHQ   77 (126)
T ss_dssp             TTCHHHHHHHTHHHHHHHHHHTT
T ss_pred             cccccccCHHHHHHHHHHHHHcC
Confidence                       567777775544

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=93.67  E-value=0.054  Score=44.46  Aligned_cols=76  Identities=9%  Similarity=0.016  Sum_probs=56.2

Q ss_pred             ecccHHHHHHHHhcC-ceEEEEcCCc---HHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCC
Q 041003           63 VRSYIRKFLKKASKM-YDIYLCTTRI---RSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEW  132 (282)
Q Consensus        63 ~RP~l~~FL~~~~~~-yei~i~T~~~---~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~  132 (282)
                      ..|++.++|+.+.+. +.++|.|++.   +.++..+++.++-.. +|  +.+++.++...  +    +.+=++.++-+++
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~  176 (235)
T 2om6_A          100 VLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLME-FI--DKTFFADEVLSYKPRKEMFEKVLNSFEVKPE  176 (235)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCGG-GC--SEEEEHHHHTCCTTCHHHHHHHHHHTTCCGG
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcHH-Hh--hhheeccccCCCCCCHHHHHHHHHHcCCCcc
Confidence            489999999999865 9999999999   999999988875443 56  55666554321  1    1222344556789


Q ss_pred             ceEEEcCCh
Q 041003          133 GVVIVDDTE  141 (282)
Q Consensus       133 ~vvivDd~~  141 (282)
                      +++.|+|++
T Consensus       177 ~~~~iGD~~  185 (235)
T 2om6_A          177 ESLHIGDTY  185 (235)
T ss_dssp             GEEEEESCT
T ss_pred             ceEEECCCh
Confidence            999999998

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=93.64  E-value=0.045  Score=45.23  Aligned_cols=75  Identities=11%  Similarity=0.045  Sum_probs=52.0

Q ss_pred             ecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCceE
Q 041003           63 VRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGVV  135 (282)
Q Consensus        63 ~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~vv  135 (282)
                      ..||+.++|+.+.+. +.++|.|++..  +..+++.+.-.. +|  +.+++.++...      .+.+=++.++-++++++
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l~~~gl~~-~f--~~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~i  167 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSRN--APKILRRLAIID-DF--HAIVDPTTLAKGKPDPDIFLTAAAMLDVSPADCA  167 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHTTCTT-TC--SEECCC---------CCHHHHHHHHHTSCGGGEE
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCchh--HHHHHHHcCcHh-hc--CEEeeHhhCCCCCCChHHHHHHHHHcCCCHHHEE
Confidence            689999999999876 99999999865  778888876543 46  44555554432      12233344556889999


Q ss_pred             EEcCChh
Q 041003          136 IVDDTEK  142 (282)
Q Consensus       136 ivDd~~~  142 (282)
                      +|+|++.
T Consensus       168 ~vGDs~~  174 (233)
T 3nas_A          168 AIEDAEA  174 (233)
T ss_dssp             EEECSHH
T ss_pred             EEeCCHH
Confidence            9999973

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=93.64  E-value=0.12  Score=44.53  Aligned_cols=78  Identities=18%  Similarity=0.076  Sum_probs=58.8

Q ss_pred             EEecccHHHHHHHHhcC--ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccccc---
Q 041003           61 VKVRSYIRKFLKKASKM--YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLR---  129 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~--yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~---  129 (282)
                      ....||+.++|+.+.+.  +.+.|.|++.+.++..+++.++-.  .|  +.+++.++...      .+.+-++.++-   
T Consensus       113 ~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~l~--~f--~~i~~~~~~~~~kp~~~~~~~~~~~lgi~~~  188 (275)
T 2qlt_A          113 SIEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILKIK--RP--EYFITANDVKQGKPHPEPYLKGRNGLGFPIN  188 (275)
T ss_dssp             CEECTTHHHHHHHHHTSCGGGEEEECSSCHHHHHHHHHHHTCC--CC--SSEECGGGCSSCTTSSHHHHHHHHHTTCCCC
T ss_pred             CCcCcCHHHHHHHHHhccCCeEEEEeCCCHHHHHHHHHHcCCC--cc--CEEEEcccCCCCCCChHHHHHHHHHcCCCcc
Confidence            56789999999999875  899999999999999999988654  25  45666665432      12223345566   


Q ss_pred             ----cCCceEEEcCChh
Q 041003          130 ----QEWGVVIVDDTEK  142 (282)
Q Consensus       130 ----~~~~vvivDd~~~  142 (282)
                          ++++++.|.|++.
T Consensus       189 ~~~~~~~~~i~~GDs~n  205 (275)
T 2qlt_A          189 EQDPSKSKVVVFEDAPA  205 (275)
T ss_dssp             SSCGGGSCEEEEESSHH
T ss_pred             ccCCCcceEEEEeCCHH
Confidence                7889999999983

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=93.60  E-value=0.11  Score=43.64  Aligned_cols=56  Identities=16%  Similarity=0.213  Sum_probs=41.5

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Y   90 (282)
                      ..+++||||||+.+...                                  ..|...+.|+++. +-..+++.|.-....
T Consensus         4 kli~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~G~~v~i~TGR~~~~   49 (231)
T 1wr8_A            4 KAISIDIDGTITYPNRM----------------------------------IHEKALEAIRRAESLGIPIMLVTGNTVQF   49 (231)
T ss_dssp             CEEEEESTTTTBCTTSC----------------------------------BCHHHHHHHHHHHHTTCCEEEECSSCHHH
T ss_pred             eEEEEECCCCCCCCCCc----------------------------------CCHHHHHHHHHHHHCCCEEEEEcCCChhH
Confidence            36899999999986321                                  3355677777774 457888888888888


Q ss_pred             HHHHHhhhcCC
Q 041003           91 AMMMAKLLNPK  101 (282)
Q Consensus        91 a~~v~~~ldp~  101 (282)
                      +..+.+.+...
T Consensus        50 ~~~~~~~l~~~   60 (231)
T 1wr8_A           50 AEAASILIGTS   60 (231)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHcCCC
Confidence            88888887654

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=93.50  E-value=0.14  Score=44.70  Aligned_cols=72  Identities=10%  Similarity=0.033  Sum_probs=53.0

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcC
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDD  139 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd  139 (282)
                      ...+||+.++|+.+.+ .+.+.|.|++.+.++..+++.+.-.. +|  ..++     .....+-++.++.. +++++|.|
T Consensus       162 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~-~f--~~i~-----~~~K~~~~~~l~~~-~~~~~vGD  232 (287)
T 3a1c_A          162 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLDL-VI--AEVL-----PHQKSEEVKKLQAK-EVVAFVGD  232 (287)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCSE-EE--CSCC-----TTCHHHHHHHHTTT-CCEEEEEC
T ss_pred             cccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCce-ee--eecC-----hHHHHHHHHHHhcC-CeEEEEEC
Confidence            4589999999999976 49999999999999999999986543 44  2222     11112334455556 89999999


Q ss_pred             Ch
Q 041003          140 TE  141 (282)
Q Consensus       140 ~~  141 (282)
                      +.
T Consensus       233 s~  234 (287)
T 3a1c_A          233 GI  234 (287)
T ss_dssp             TT
T ss_pred             CH
Confidence            87

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=93.48  E-value=0.08  Score=42.21  Aligned_cols=78  Identities=14%  Similarity=0.049  Sum_probs=55.3

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      ...+|++.++|+.+.+. +.++++|++...++. +++.++-.. +|  +.+++.++...  +    +.+=++.++-+++.
T Consensus        84 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~~~~~~~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~~~i~~~~  159 (207)
T 2go7_A           84 VVLMPGAREVLAWADESGIQQFIYTHKGNNAFT-ILKDLGVES-YF--TEILTSQSGFVRKPSPEAATYLLDKYQLNSDN  159 (207)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCTHHHH-HHHHHTCGG-GE--EEEECGGGCCCCTTSSHHHHHHHHHHTCCGGG
T ss_pred             ceeCcCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHcCchh-he--eeEEecCcCCCCCCCcHHHHHHHHHhCCCccc
Confidence            56799999999999875 999999999999999 888875443 45  44555554321  1    11122334457889


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      ++.|+|+..
T Consensus       160 ~~~iGD~~n  168 (207)
T 2go7_A          160 TYYIGDRTL  168 (207)
T ss_dssp             EEEEESSHH
T ss_pred             EEEECCCHH
Confidence            999999974

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=93.45  E-value=0.039  Score=46.75  Aligned_cols=76  Identities=12%  Similarity=0.073  Sum_probs=56.8

Q ss_pred             EecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           62 KVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        62 ~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      ...||+.++|+.+. +.+.+.+.|++..  +..+++.+.-.. +|  +.+++.++...      .+.+-+++++-+++++
T Consensus        95 ~~~pg~~~ll~~L~~~g~~i~i~t~~~~--~~~~l~~~gl~~-~f--d~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~  169 (243)
T 4g9b_A           95 AVLPGIRSLLADLRAQQISVGLASVSLN--APTILAALELRE-FF--TFCADASQLKNSKPDPEIFLAACAGLGVPPQAC  169 (243)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCCCTT--HHHHHHHTTCGG-GC--SEECCGGGCSSCTTSTHHHHHHHHHHTSCGGGE
T ss_pred             cccccHHHHHHhhhcccccceecccccc--hhhhhhhhhhcc-cc--ccccccccccCCCCcHHHHHHHHHHcCCChHHE
Confidence            46799999999996 5688999988654  677888876544 56  66777666542      2445566777789999


Q ss_pred             EEEcCChh
Q 041003          135 VIVDDTEK  142 (282)
Q Consensus       135 vivDd~~~  142 (282)
                      |+|+|++.
T Consensus       170 l~VgDs~~  177 (243)
T 4g9b_A          170 IGIEDAQA  177 (243)
T ss_dssp             EEEESSHH
T ss_pred             EEEcCCHH
Confidence            99999984

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=93.37  E-value=0.11  Score=42.22  Aligned_cols=79  Identities=15%  Similarity=0.040  Sum_probs=57.0

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      +...|++.++|+.+.+ .+.+++.|++.+.++..+++.++-.. +|  +.+++.++...  +    +.+=++.++-+++.
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  164 (225)
T 3d6j_A           88 TILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDD-WF--DIIIGGEDVTHHKPDPEGLLLAIDRLKACPEE  164 (225)
T ss_dssp             CEECTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHTSSCTT-CC--SEEECGGGCSSCTTSTHHHHHHHHHTTCCGGG
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCchh-he--eeeeehhhcCCCCCChHHHHHHHHHhCCChHH
Confidence            4568999999999975 58999999999999999998876443 45  45565554432  1    11223344557889


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      ++.|+|++.
T Consensus       165 ~i~iGD~~n  173 (225)
T 3d6j_A          165 VLYIGDSTV  173 (225)
T ss_dssp             EEEEESSHH
T ss_pred             eEEEcCCHH
Confidence            999999974

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=93.36  E-value=0.068  Score=45.14  Aligned_cols=57  Identities=12%  Similarity=0.112  Sum_probs=45.0

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++||||||+.+..                                  .+.|...+.|+++.+ ...+++.|......
T Consensus         6 kli~~DlDGTLl~~~~----------------------------------~i~~~~~~~l~~l~~~g~~~~i~TGr~~~~   51 (227)
T 1l6r_A            6 RLAAIDVDGNLTDRDR----------------------------------LISTKAIESIRSAEKKGLTVSLLSGNVIPV   51 (227)
T ss_dssp             CEEEEEHHHHSBCTTS----------------------------------CBCHHHHHHHHHHHHTTCEEEEECSSCHHH
T ss_pred             EEEEEECCCCCcCCCC----------------------------------cCCHHHHHHHHHHHHCCCEEEEECCCCcHH
Confidence            4789999999997521                                  145678888998865 58999999999999


Q ss_pred             HHHHHhhhcCCC
Q 041003           91 AMMMAKLLNPKC  102 (282)
Q Consensus        91 a~~v~~~ldp~~  102 (282)
                      +..+++.+...+
T Consensus        52 ~~~~~~~l~~~~   63 (227)
T 1l6r_A           52 VYALKIFLGING   63 (227)
T ss_dssp             HHHHHHHHTCCS
T ss_pred             HHHHHHHhCCCC
Confidence            999998886543

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=93.32  E-value=0.062  Score=45.22  Aligned_cols=78  Identities=10%  Similarity=-0.043  Sum_probs=56.5

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcC
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDD  139 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd  139 (282)
                      +...||+.++|+.+.+.+.+.|.|++...++..+++.++-.. +|  +.+++...... .+.+=++.++-++++++.|.|
T Consensus       111 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~~-~f--~~i~~~~kp~~~~~~~~~~~l~~~~~~~i~iGD  187 (251)
T 2pke_A          111 VEVIAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQSGLSD-LF--PRIEVVSEKDPQTYARVLSEFDLPAERFVMIGN  187 (251)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEEESCHHHHHHHHHHHSGGG-TC--CCEEEESCCSHHHHHHHHHHHTCCGGGEEEEES
T ss_pred             CCcCccHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCcHH-hC--ceeeeeCCCCHHHHHHHHHHhCcCchhEEEECC
Confidence            457899999999998779999999999999999998876443 46  45555322111 122233445557889999999


Q ss_pred             Ch
Q 041003          140 TE  141 (282)
Q Consensus       140 ~~  141 (282)
                      ++
T Consensus       188 ~~  189 (251)
T 2pke_A          188 SL  189 (251)
T ss_dssp             CC
T ss_pred             Cc
Confidence            97

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=93.20  E-value=0.067  Score=44.66  Aligned_cols=80  Identities=10%  Similarity=-0.087  Sum_probs=58.1

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      ....||+.++|+.+.+. +.++|.|++.+.++...++. .-.. +|..+.+++.++...      .+.+=+++++-++++
T Consensus       108 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~~-~f~~d~i~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  185 (243)
T 3qxg_A          108 AERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEH-NFPG-MFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADE  185 (243)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECCCCCHHHHTTHHH-HSTT-TCCGGGEECTTTCSSCTTSSHHHHHHHHHTTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH-hHHH-hcCcceEEeHHhCCCCCCChHHHHHHHHHcCCCHHH
Confidence            56789999999999865 99999999999998888876 4333 451145666665432      122334455668899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|++.
T Consensus       186 ~i~vGD~~~  194 (243)
T 3qxg_A          186 AVVIENAPL  194 (243)
T ss_dssp             EEEEECSHH
T ss_pred             eEEEeCCHH
Confidence            999999983

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=92.94  E-value=0.044  Score=45.83  Aligned_cols=78  Identities=12%  Similarity=-0.111  Sum_probs=53.0

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcCC
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDT  140 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd~  140 (282)
                      +...||+.++|+.+.+...++|.|++.+.++..+++.++-.. +| ...+.. ........+.+.. +-+++++++|+|+
T Consensus        95 ~~~~~g~~~~l~~l~~~g~~~i~Tn~~~~~~~~~l~~~gl~~-~f-~~~~~~-~~~K~~~~~~~~~-~~~~~~~~~vgDs  170 (231)
T 2p11_A           95 SRVYPGALNALRHLGARGPTVILSDGDVVFQPRKIARSGLWD-EV-EGRVLI-YIHKELMLDQVME-CYPARHYVMVDDK  170 (231)
T ss_dssp             GGBCTTHHHHHHHHHTTSCEEEEEECCSSHHHHHHHHTTHHH-HT-TTCEEE-ESSGGGCHHHHHH-HSCCSEEEEECSC
T ss_pred             CCcCccHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHcCcHH-hc-CeeEEe-cCChHHHHHHHHh-cCCCceEEEEcCc
Confidence            467899999999998766899999999999999998875432 55 222211 1111111222222 3367899999999


Q ss_pred             hh
Q 041003          141 EK  142 (282)
Q Consensus       141 ~~  142 (282)
                      +.
T Consensus       171 ~~  172 (231)
T 2p11_A          171 LR  172 (231)
T ss_dssp             HH
T ss_pred             cc
Confidence            85

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=92.79  E-value=0.047  Score=45.86  Aligned_cols=79  Identities=9%  Similarity=0.003  Sum_probs=54.2

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhh-hcCCCcccccccEEEcc--CCCC------Cceecccccccc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKL-LNPKCEYHISSRLITRE--DFKE------KGKKSGDLVLRQ  130 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~-ldp~~~~f~~~rv~~r~--~~~~------~~~KdL~~l~~~  130 (282)
                      +...||+.++|+.+.+. +.++|.|++.+.++...+.. ++-. .+|  +.+++.+  +...      .+.+=++.++-+
T Consensus       111 ~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~l~~~~~l~-~~f--~~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~  187 (250)
T 3l5k_A          111 AALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFF-SLF--SHIVLGDDPEVQHGKPDPDIFLACAKRFSPP  187 (250)
T ss_dssp             CCBCTTHHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHH-TTS--SCEECTTCTTCCSCTTSTHHHHHHHHTSSSC
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHhccCHH-hhe--eeEEecchhhccCCCCChHHHHHHHHHcCCC
Confidence            56899999999999875 99999999998887776532 2211 245  4566666  4332      122334445555


Q ss_pred             C--CceEEEcCChh
Q 041003          131 E--WGVVIVDDTEK  142 (282)
Q Consensus       131 ~--~~vvivDd~~~  142 (282)
                      +  +++++|+|+..
T Consensus       188 ~~~~~~i~iGD~~~  201 (250)
T 3l5k_A          188 PAMEKCLVFEDAPN  201 (250)
T ss_dssp             CCGGGEEEEESSHH
T ss_pred             CCcceEEEEeCCHH
Confidence            5  99999999984

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=92.48  E-value=0.024  Score=49.74  Aligned_cols=110  Identities=13%  Similarity=-0.017  Sum_probs=64.4

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~   89 (282)
                      ...+++|.|+|+-......  ...+.                   + .......||+.++|+.+.+ -+.++|.|+....
T Consensus       159 ~~~i~iD~dgtl~~~~~~~--~~~~~-------------------~-~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~  216 (301)
T 1ltq_A          159 PKAVIFDVDGTLAKMNGRG--PYDLE-------------------K-CDTDVINPMVVELSKMYALMGYQIVVVSGRESG  216 (301)
T ss_dssp             CEEEEEETBTTTBCCSSCC--TTCGG-------------------G-GGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCC
T ss_pred             cceEEEeCCCCcccccCCC--chhhh-------------------h-ccccCCChHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            3577899999987654321  10010                   0 0113468999999999975 5999999999988


Q ss_pred             HHHHHHhhhcC--------CCcccccccEEEccCCCCC-----ceeccccccccC-CceEEEcCChhhh
Q 041003           90 YAMMMAKLLNP--------KCEYHISSRLITREDFKEK-----GKKSGDLVLRQE-WGVVIVDDTEKVW  144 (282)
Q Consensus        90 Ya~~v~~~ldp--------~~~~f~~~rv~~r~~~~~~-----~~KdL~~l~~~~-~~vvivDd~~~~~  144 (282)
                      ++..+...|+-        .+..|  +.++.+++...+     +.+-+..+..+. +.+++|+|++.-.
T Consensus       217 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~~vgD~~~di  283 (301)
T 1ltq_A          217 TKEDPTKYYRMTRKWVEDIAGVPL--VMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVV  283 (301)
T ss_dssp             CSSSTTHHHHHHHHHHHHTTCCCC--SEEEECCTTCCSCHHHHHHHHHHHHTTTTCEEEEEEECCHHHH
T ss_pred             cchhHHHHHHhcccccccccCCCc--hheeeccCCCCcHHHHHHHHHHHHHhccccceEEEeCCcHHHH
Confidence            77443333322        23235  556766654221     111122333333 3468899998443

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=92.38  E-value=0.21  Score=43.19  Aligned_cols=57  Identities=19%  Similarity=0.266  Sum_probs=40.9

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~   89 (282)
                      ...+++||||||+.+...                                  .-|...+.|+++.+ -..++|.|.-...
T Consensus         9 ~~li~~DlDGTLl~~~~~----------------------------------~~~~~~~~l~~l~~~G~~~~iaTGR~~~   54 (275)
T 1xvi_A            9 PLLVFSDLDGTLLDSHSY----------------------------------DWQPAAPWLTRLREANVPVILCSSKTSA   54 (275)
T ss_dssp             CEEEEEECTTTTSCSSCC----------------------------------SCCTTHHHHHHHHHTTCCEEEECSSCHH
T ss_pred             ceEEEEeCCCCCCCCCCc----------------------------------CCHHHHHHHHHHHHCCCeEEEEcCCCHH
Confidence            467899999999975321                                  11334677777754 4788888888888


Q ss_pred             HHHHHHhhhcCC
Q 041003           90 YAMMMAKLLNPK  101 (282)
Q Consensus        90 Ya~~v~~~ldp~  101 (282)
                      .+..+++.+...
T Consensus        55 ~~~~~~~~l~~~   66 (275)
T 1xvi_A           55 EMLYLQKTLGLQ   66 (275)
T ss_dssp             HHHHHHHHTTCT
T ss_pred             HHHHHHHHcCCC
Confidence            888888877544

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=92.37  E-value=0.16  Score=44.01  Aligned_cols=18  Identities=28%  Similarity=0.104  Sum_probs=13.7

Q ss_pred             CCCeeEEEeCCCceeeee
Q 041003            9 QKKLHLVLDLDQTLPHAV   26 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~   26 (282)
                      .+...+++||||||+.+.
T Consensus        19 ~~~kli~~DlDGTLl~~~   36 (285)
T 3pgv_A           19 GMYQVVASDLDGTLLSPD   36 (285)
T ss_dssp             --CCEEEEECCCCCSCTT
T ss_pred             CcceEEEEeCcCCCCCCC
Confidence            345678999999999864

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=92.06  E-value=0.24  Score=42.41  Aligned_cols=56  Identities=25%  Similarity=0.197  Sum_probs=39.6

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~   89 (282)
                      ...+++||||||+.+...                                  .-|...+.|+++. +-..+++.|.-...
T Consensus         5 ~kli~fDlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~~~   50 (279)
T 4dw8_A            5 YKLIVLDLDGTLTNSKKE----------------------------------ISSRNRETLIRIQEQGIRLVLASGRPTY   50 (279)
T ss_dssp             CCEEEECCCCCCSCTTSC----------------------------------CCHHHHHHHHHHHHTTCEEEEECSSCHH
T ss_pred             ceEEEEeCCCCCCCCCCc----------------------------------cCHHHHHHHHHHHHCCCEEEEEcCCChH
Confidence            357899999999976431                                  2245566677764 45788888877777


Q ss_pred             HHHHHHhhhcC
Q 041003           90 YAMMMAKLLNP  100 (282)
Q Consensus        90 Ya~~v~~~ldp  100 (282)
                      -+..+++.+..
T Consensus        51 ~~~~~~~~l~~   61 (279)
T 4dw8_A           51 GIVPLANELRM   61 (279)
T ss_dssp             HHHHHHHHTTG
T ss_pred             HHHHHHHHhCC
Confidence            77778777753

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=91.97  E-value=0.2  Score=43.11  Aligned_cols=17  Identities=29%  Similarity=0.362  Sum_probs=13.9

Q ss_pred             CeeEEEeCCCceeeeec
Q 041003           11 KLHLVLDLDQTLPHAVD   27 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~   27 (282)
                      ...+++||||||+.+..
T Consensus         6 ~kli~fDlDGTLl~~~~   22 (290)
T 3dnp_A            6 KQLLALNIDGALLRSNG   22 (290)
T ss_dssp             CCEEEECCCCCCSCTTS
T ss_pred             ceEEEEcCCCCCCCCCC
Confidence            35789999999998743

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=91.96  E-value=0.24  Score=42.36  Aligned_cols=57  Identities=16%  Similarity=0.150  Sum_probs=32.4

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~   89 (282)
                      ...+++||||||+.+...                                  .-|...+.|+++. +-..+++.|.-...
T Consensus         5 ~kli~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~~~   50 (279)
T 3mpo_A            5 IKLIAIDIDGTLLNEKNE----------------------------------LAQATIDAVQAAKAQGIKVVLCTGRPLT   50 (279)
T ss_dssp             CCEEEECC---------------------------------------------CHHHHHHHHHHHHTTCEEEEECSSCHH
T ss_pred             eEEEEEcCcCCCCCCCCc----------------------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence            356899999999987431                                  2344566666664 45778888877777


Q ss_pred             HHHHHHhhhcCC
Q 041003           90 YAMMMAKLLNPK  101 (282)
Q Consensus        90 Ya~~v~~~ldp~  101 (282)
                      -+..+++.++..
T Consensus        51 ~~~~~~~~l~~~   62 (279)
T 3mpo_A           51 GVQPYLDAMDID   62 (279)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCC
Confidence            777888877654

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=91.76  E-value=0.083  Score=42.83  Aligned_cols=99  Identities=15%  Similarity=0.039  Sum_probs=56.9

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcH
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIR   88 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~   88 (282)
                      +-..||+|+||||......  .++.                    ...--.+..|.+.  .|+.+.+ -+.+.|-|+.  
T Consensus         8 ~ikliv~D~DGtL~d~~~~--~~~~--------------------g~~~~~f~~~D~~--~L~~Lk~~Gi~~~I~Tg~--   61 (168)
T 3ewi_A            8 EIKLLVCNIDGCLTNGHIY--VSGD--------------------QKEIISYDVKDAI--GISLLKKSGIEVRLISER--   61 (168)
T ss_dssp             CCCEEEEECCCCCSCSCCB--CCSS--------------------CCCEEEEEHHHHH--HHHHHHHTTCEEEEECSS--
T ss_pred             cCcEEEEeCccceECCcEE--EcCC--------------------CCEEEEEecCcHH--HHHHHHHCCCEEEEEeCc--
Confidence            3457899999999876432  1100                    0001122445553  5777764 5999999988  


Q ss_pred             HHHHHHHh--hhcCCCcccccccEEEccCCCCCceec-cccccccCCceEEEcCChh
Q 041003           89 SYAMMMAK--LLNPKCEYHISSRLITREDFKEKGKKS-GDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        89 ~Ya~~v~~--~ldp~~~~f~~~rv~~r~~~~~~~~Kd-L~~l~~~~~~vvivDd~~~  142 (282)
                      ..+..+++  .++-.  +| .+     .......++. ++.++-+++.+++|-|+..
T Consensus        62 ~~~~~~l~~l~lgi~--~~-~g-----~~~K~~~l~~~~~~~gi~~~~~~~vGD~~n  110 (168)
T 3ewi_A           62 ACSKQTLSALKLDCK--TE-VS-----VSDKLATVDEWRKEMGLCWKEVAYLGNEVS  110 (168)
T ss_dssp             CCCHHHHHTTCCCCC--EE-CS-----CSCHHHHHHHHHHHTTCCGGGEEEECCSGG
T ss_pred             HHHHHHHHHhCCCcE--EE-EC-----CCChHHHHHHHHHHcCcChHHEEEEeCCHh
Confidence            78888988  44432  33 11     1110011121 1233447789999999874

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=91.56  E-value=0.11  Score=48.19  Aligned_cols=78  Identities=17%  Similarity=-0.017  Sum_probs=57.1

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCC------cHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTR------IRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLV  127 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~------~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l  127 (282)
                      +...||+.++|+.+.+. |.++|.|++      .+......+..|+.   +|  +.+++.++...      .+.+-++++
T Consensus        99 ~~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~~---~f--d~i~~~~~~~~~KP~p~~~~~~~~~l  173 (555)
T 3i28_A           99 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKM---HF--DFLIESCQVGMVKPEPQIYKFLLDTL  173 (555)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHT---TS--SEEEEHHHHTCCTTCHHHHHHHHHHH
T ss_pred             cCcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhhh---he--eEEEeccccCCCCCCHHHHHHHHHHc
Confidence            56889999999999876 999999999      66665555545543   57  56777765442      234455666


Q ss_pred             cccCCceEEEcCChhh
Q 041003          128 LRQEWGVVIVDDTEKV  143 (282)
Q Consensus       128 ~~~~~~vvivDd~~~~  143 (282)
                      +-+++++++|+|+..-
T Consensus       174 g~~p~~~~~v~D~~~d  189 (555)
T 3i28_A          174 KASPSEVVFLDDIGAN  189 (555)
T ss_dssp             TCCGGGEEEEESCHHH
T ss_pred             CCChhHEEEECCcHHH
Confidence            6688999999999843

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=91.51  E-value=0.33  Score=41.61  Aligned_cols=57  Identities=19%  Similarity=0.169  Sum_probs=36.9

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYA   91 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya   91 (282)
                      ..+++||||||+.+...  .                                -|...+.|++..+-..+++.|.-...-+
T Consensus         3 kli~~DlDGTLl~~~~~--i--------------------------------~~~~~~al~~~~~Gi~v~iaTGR~~~~~   48 (268)
T 1nf2_A            3 RVFVFDLDGTLLNDNLE--I--------------------------------SEKDRRNIEKLSRKCYVVFASGRMLVST   48 (268)
T ss_dssp             CEEEEECCCCCSCTTSC--C--------------------------------CHHHHHHHHHHTTTSEEEEECSSCHHHH
T ss_pred             cEEEEeCCCcCCCCCCc--c--------------------------------CHHHHHHHHHHhCCCEEEEECCCChHHH
Confidence            36899999999986321  1                                2334555555223467777777777777


Q ss_pred             HHHHhhhcCCC
Q 041003           92 MMMAKLLNPKC  102 (282)
Q Consensus        92 ~~v~~~ldp~~  102 (282)
                      ..+++.++..+
T Consensus        49 ~~~~~~l~~~~   59 (268)
T 1nf2_A           49 LNVEKKYFKRT   59 (268)
T ss_dssp             HHHHHHHSSSC
T ss_pred             HHHHHHhCCCC
Confidence            77777776543

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=91.48  E-value=0.31  Score=42.24  Aligned_cols=56  Identities=23%  Similarity=0.211  Sum_probs=37.9

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++||||||+.+...                                  ..|...+.|+++.+ -..+++.|.-+...
T Consensus         5 kli~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~~~~   50 (288)
T 1nrw_A            5 KLIAIDLDGTLLNSKHQ----------------------------------VSLENENALRQAQRDGIEVVVSTGRAHFD   50 (288)
T ss_dssp             CEEEEECCCCCSCTTSC----------------------------------CCHHHHHHHHHHHHTTCEEEEECSSCHHH
T ss_pred             EEEEEeCCCCCCCCCCc----------------------------------cCHHHHHHHHHHHHCCCEEEEEeCCCHHH
Confidence            46899999999987421                                  12344556666643 46777888777777


Q ss_pred             HHHHHhhhcCC
Q 041003           91 AMMMAKLLNPK  101 (282)
Q Consensus        91 a~~v~~~ldp~  101 (282)
                      +..+++.+...
T Consensus        51 ~~~~~~~l~~~   61 (288)
T 1nrw_A           51 VMSIFEPLGIK   61 (288)
T ss_dssp             HHHHHGGGTCC
T ss_pred             HHHHHHHcCCC
Confidence            77777776543

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=91.41  E-value=0.21  Score=43.18  Aligned_cols=60  Identities=13%  Similarity=0.134  Sum_probs=35.4

Q ss_pred             cCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCC
Q 041003            8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTR   86 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~   86 (282)
                      ..+...+++||||||+.+... ..                                -|...+-|+++. +-..+++.|.-
T Consensus        18 ~~~~kli~~DlDGTLl~~~~~-~i--------------------------------~~~~~~al~~l~~~G~~v~iaTGR   64 (283)
T 3dao_A           18 QGMIKLIATDIDGTLVKDGSL-LI--------------------------------DPEYMSVIDRLIDKGIIFVVCSGR   64 (283)
T ss_dssp             -CCCCEEEECCBTTTBSTTCS-CC--------------------------------CHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCceEEEEeCcCCCCCCCCC-cC--------------------------------CHHHHHHHHHHHHCCCEEEEEcCC
Confidence            345568999999999977431 11                                233445555553 34566666665


Q ss_pred             cHHHHHHHHhhhcC
Q 041003           87 IRSYAMMMAKLLNP  100 (282)
Q Consensus        87 ~~~Ya~~v~~~ldp  100 (282)
                      ...-+..+++.+.+
T Consensus        65 ~~~~~~~~~~~l~~   78 (283)
T 3dao_A           65 QFSSEFKLFAPIKH   78 (283)
T ss_dssp             CHHHHHHHTGGGGG
T ss_pred             CHHHHHHHHHHcCC
Confidence            55555566655543

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=91.36  E-value=0.22  Score=43.14  Aligned_cols=57  Identities=18%  Similarity=0.125  Sum_probs=37.2

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHH
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRS   89 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~   89 (282)
                      ...+++||||||+.+...                                  .-|...+.|+++.+ -..+++.|.-...
T Consensus         5 ~kli~~DlDGTLl~~~~~----------------------------------i~~~~~~aL~~l~~~Gi~vviaTGR~~~   50 (282)
T 1rkq_A            5 IKLIAIDMDGTLLLPDHT----------------------------------ISPAVKNAIAAARARGVNVVLTTGRPYA   50 (282)
T ss_dssp             CCEEEECCCCCCSCTTSC----------------------------------CCHHHHHHHHHHHHTTCEEEEECSSCGG
T ss_pred             ceEEEEeCCCCCCCCCCc----------------------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence            347899999999986321                                  12344566666654 4667777766666


Q ss_pred             HHHHHHhhhcCC
Q 041003           90 YAMMMAKLLNPK  101 (282)
Q Consensus        90 Ya~~v~~~ldp~  101 (282)
                      -+..+++.+...
T Consensus        51 ~~~~~~~~l~l~   62 (282)
T 1rkq_A           51 GVHNYLKELHME   62 (282)
T ss_dssp             GTHHHHHHTTCC
T ss_pred             HHHHHHHHhCCC
Confidence            666777766543

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=91.27  E-value=0.24  Score=39.26  Aligned_cols=75  Identities=9%  Similarity=0.041  Sum_probs=51.1

Q ss_pred             ecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCceE
Q 041003           63 VRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWGVV  135 (282)
Q Consensus        63 ~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~vv  135 (282)
                      ..|++.++|+.+.+. +.+++.|++. .++..+++.+.-.. +|  +.+++.+++..  +    +.+=++.++-+  +++
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~-~~~~~~l~~~~~~~-~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~--~~~  156 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRN-DQVLEILEKTSIAA-YF--TEVVTSSSGFKRKPNPESMLYLREKYQIS--SGL  156 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSC-THHHHHHHHTTCGG-GE--EEEECGGGCCCCTTSCHHHHHHHHHTTCS--SEE
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCc-HHHHHHHHHcCCHh-he--eeeeeccccCCCCCCHHHHHHHHHHcCCC--eEE
Confidence            789999999999765 9999999876 47888888775443 45  55566555432  1    11112233334  899


Q ss_pred             EEcCChhh
Q 041003          136 IVDDTEKV  143 (282)
Q Consensus       136 ivDd~~~~  143 (282)
                      .|+|++.-
T Consensus       157 ~iGD~~~D  164 (190)
T 2fi1_A          157 VIGDRPID  164 (190)
T ss_dssp             EEESSHHH
T ss_pred             EEcCCHHH
Confidence            99999743

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=91.23  E-value=0.21  Score=42.33  Aligned_cols=15  Identities=27%  Similarity=0.310  Sum_probs=13.0

Q ss_pred             eeEEEeCCCceeeee
Q 041003           12 LHLVLDLDQTLPHAV   26 (282)
Q Consensus        12 l~LVLDLD~TLihs~   26 (282)
                      ..+++||||||+.+.
T Consensus         4 kli~~DlDGTLl~~~   18 (258)
T 2pq0_A            4 KIVFFDIDGTLLDEQ   18 (258)
T ss_dssp             CEEEECTBTTTBCTT
T ss_pred             eEEEEeCCCCCcCCC
Confidence            468999999999875

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=91.12  E-value=0.13  Score=44.45  Aligned_cols=78  Identities=9%  Similarity=0.045  Sum_probs=53.7

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCC----------CcccccccEEEccC-CCC----Cceeccc
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPK----------CEYHISSRLITRED-FKE----KGKKSGD  125 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~----------~~~f~~~rv~~r~~-~~~----~~~KdL~  125 (282)
                      +...||+.++|+.   .+.++|.|++.+..+..+++.....          ..+|  ..+|...- ..+    .+.+-++
T Consensus       124 ~~~~pgv~e~L~~---g~~l~i~Tn~~~~~~~~~l~~~~~g~~~~~~~l~l~~~~--~~~f~~~~~g~KP~p~~~~~a~~  198 (253)
T 2g80_A          124 APVYADAIDFIKR---KKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLNSYI--DGYFDINTSGKKTETQSYANILR  198 (253)
T ss_dssp             BCCCHHHHHHHHH---CSCEEEECSSCHHHHHHHHHSBCCTTCTTSCCBCCGGGC--CEEECHHHHCCTTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHc---CCEEEEEeCCCHHHHHHHHHhhcccccccccccchHhhc--ceEEeeeccCCCCCHHHHHHHHH
Confidence            5678999999999   7999999999999999998876211          1234  23332211 111    2344455


Q ss_pred             cccccCCceEEEcCChhh
Q 041003          126 LVLRQEWGVVIVDDTEKV  143 (282)
Q Consensus       126 ~l~~~~~~vvivDd~~~~  143 (282)
                      +++-+++++++|+|++.-
T Consensus       199 ~lg~~p~~~l~vgDs~~d  216 (253)
T 2g80_A          199 DIGAKASEVLFLSDNPLE  216 (253)
T ss_dssp             HHTCCGGGEEEEESCHHH
T ss_pred             HcCCCcccEEEEcCCHHH
Confidence            666678999999999843

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=91.03  E-value=0.27  Score=40.57  Aligned_cols=40  Identities=8%  Similarity=-0.086  Sum_probs=36.0

Q ss_pred             EecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCC
Q 041003           62 KVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPK  101 (282)
Q Consensus        62 ~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~  101 (282)
                      .++||+.++|+.+.+ .+.++|.|++.+.+++.+++.+.-.
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~  132 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQ  132 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCC
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence            469999999999975 5999999999999999999998755

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=90.94  E-value=0.13  Score=43.92  Aligned_cols=16  Identities=25%  Similarity=0.272  Sum_probs=13.4

Q ss_pred             CeeEEEeCCCceeeee
Q 041003           11 KLHLVLDLDQTLPHAV   26 (282)
Q Consensus        11 kl~LVLDLD~TLihs~   26 (282)
                      ...+++||||||+.+.
T Consensus         5 ~kli~~DlDGTLl~~~   20 (264)
T 3epr_A            5 YKGYLIDLDGTIYKGK   20 (264)
T ss_dssp             CCEEEECCBTTTEETT
T ss_pred             CCEEEEeCCCceEeCC
Confidence            4578999999999874

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=90.65  E-value=0.34  Score=41.49  Aligned_cols=17  Identities=29%  Similarity=0.436  Sum_probs=13.6

Q ss_pred             CCeeEEEeCCCceeeee
Q 041003           10 KKLHLVLDLDQTLPHAV   26 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~   26 (282)
                      +...+++||||||+.+.
T Consensus        12 ~~kli~~DlDGTLl~~~   28 (262)
T 2fue_A           12 ERVLCLFDVDGTLTPAR   28 (262)
T ss_dssp             -CEEEEEESBTTTBSTT
T ss_pred             CeEEEEEeCccCCCCCC
Confidence            45678999999999863

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=90.47  E-value=0.47  Score=40.20  Aligned_cols=15  Identities=20%  Similarity=0.439  Sum_probs=12.7

Q ss_pred             CeeEEEeCCCceeee
Q 041003           11 KLHLVLDLDQTLPHA   25 (282)
Q Consensus        11 kl~LVLDLD~TLihs   25 (282)
                      ...+++||||||+.+
T Consensus         8 ~kli~~DlDGTLl~~   22 (268)
T 3qgm_A            8 KKGYIIDIDGVIGKS   22 (268)
T ss_dssp             CSEEEEECBTTTEET
T ss_pred             CCEEEEcCcCcEECC
Confidence            357899999999975

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=90.20  E-value=0.21  Score=42.15  Aligned_cols=80  Identities=15%  Similarity=0.008  Sum_probs=55.0

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccC-C
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQE-W  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~-~  132 (282)
                      ....||+.++|+.+.+. +.+.|.|++.+.++..+++.++....+|  +.+++.+++..  +    +.+=++.++-+. +
T Consensus       102 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~  179 (267)
T 1swv_A          102 ASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQGYKP--DFLVTPDDVPAGRPYPWMCYKNAMELGVYPMN  179 (267)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHTTCCC--SCCBCGGGSSCCTTSSHHHHHHHHHHTCCSGG
T ss_pred             cccCccHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCcccCh--HheecCCccCCCCCCHHHHHHHHHHhCCCCCc
Confidence            45679999999999754 9999999999999999998875443222  44455554432  1    112223345566 8


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      .++.|.|+..
T Consensus       180 ~~i~iGD~~n  189 (267)
T 1swv_A          180 HMIKVGDTVS  189 (267)
T ss_dssp             GEEEEESSHH
T ss_pred             CEEEEeCCHH
Confidence            9999999983

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=90.11  E-value=0.39  Score=38.57  Aligned_cols=79  Identities=11%  Similarity=0.118  Sum_probs=53.8

Q ss_pred             ecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCC-CcccccccEEE-ccCC------C----CCceeccccc-c
Q 041003           63 VRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPK-CEYHISSRLIT-REDF------K----EKGKKSGDLV-L  128 (282)
Q Consensus        63 ~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~-~~~f~~~rv~~-r~~~------~----~~~~KdL~~l-~  128 (282)
                      .+||+.++|+.+.+. +.++|.|++...++..+++.++-. ..+| ...+.. .+.+      .    ....+-+... +
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (219)
T 3kd3_A           83 LTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPRENIF-AVETIWNSDGSFKELDNSNGACDSKLSAFDKAKG  161 (219)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCCGGGEE-EEEEEECTTSBEEEEECTTSTTTCHHHHHHHHGG
T ss_pred             CChhHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCCcccEE-EeeeeecCCCceeccCCCCCCcccHHHHHHHHhC
Confidence            789999999999765 999999999999999999998654 2244 222222 2211      1    1222334333 4


Q ss_pred             ccCCceEEEcCChh
Q 041003          129 RQEWGVVIVDDTEK  142 (282)
Q Consensus       129 ~~~~~vvivDd~~~  142 (282)
                      -+++++++|.|+..
T Consensus       162 ~~~~~~~~vGD~~~  175 (219)
T 3kd3_A          162 LIDGEVIAIGDGYT  175 (219)
T ss_dssp             GCCSEEEEEESSHH
T ss_pred             CCCCCEEEEECCHh
Confidence            47788999999874

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=90.01  E-value=0.29  Score=41.47  Aligned_cols=53  Identities=21%  Similarity=0.233  Sum_probs=33.9

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYA   91 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya   91 (282)
                      ..+++||||||+.+...                                  . |...+.|+++.+...+++-|.-....+
T Consensus         4 ~li~~DlDGTLl~~~~~----------------------------------~-~~~~~~l~~~~~gi~v~iaTGR~~~~~   48 (244)
T 1s2o_A            4 LLLISDLDNTWVGDQQA----------------------------------L-EHLQEYLGDRRGNFYLAYATGRSYHSA   48 (244)
T ss_dssp             EEEEECTBTTTBSCHHH----------------------------------H-HHHHHHHHTTGGGEEEEEECSSCHHHH
T ss_pred             eEEEEeCCCCCcCCHHH----------------------------------H-HHHHHHHHHhcCCCEEEEEcCCCHHHH
Confidence            47899999999985310                                  0 223455555555566677776666666


Q ss_pred             HHHHhhhc
Q 041003           92 MMMAKLLN   99 (282)
Q Consensus        92 ~~v~~~ld   99 (282)
                      ..+++.+.
T Consensus        49 ~~~~~~l~   56 (244)
T 1s2o_A           49 RELQKQVG   56 (244)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcC
Confidence            66766643

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=90.00  E-value=0.22  Score=40.65  Aligned_cols=78  Identities=17%  Similarity=0.179  Sum_probs=55.7

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCC--------ceeccccccccCC
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEK--------GKKSGDLVLRQEW  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~--------~~KdL~~l~~~~~  132 (282)
                      +...|++.++|+.+..  .++|.|++.+.++..+++.++-.. +| .+.+++.++....        +.+=++.++-+++
T Consensus        86 ~~~~~~~~~~l~~l~~--~~~i~s~~~~~~~~~~l~~~~l~~-~~-~~~~~~~~~~~~~~~kpk~~~~~~~~~~l~~~~~  161 (229)
T 2fdr_A           86 VKIIDGVKFALSRLTT--PRCICSNSSSHRLDMMLTKVGLKP-YF-APHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPD  161 (229)
T ss_dssp             CCBCTTHHHHHHHCCS--CEEEEESSCHHHHHHHHHHTTCGG-GT-TTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGG
T ss_pred             CccCcCHHHHHHHhCC--CEEEEECCChhHHHHHHHhCChHH-hc-cceEEeccccccCCCCcCHHHHHHHHHHcCCChh
Confidence            4578999999999876  899999999999999999885443 34 3556665542211        1122334455788


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      +++.|+|+..
T Consensus       162 ~~i~iGD~~~  171 (229)
T 2fdr_A          162 RVVVVEDSVH  171 (229)
T ss_dssp             GEEEEESSHH
T ss_pred             HeEEEcCCHH
Confidence            9999999984

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=89.94  E-value=0.23  Score=42.01  Aligned_cols=57  Identities=18%  Similarity=0.144  Sum_probs=35.5

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAM   92 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~   92 (282)
                      .+++||||||+.....+...                             ..-|...+.|+++.+.-.++|-|.-....+.
T Consensus         3 li~~DlDGTLl~~~~~~~~~-----------------------------~i~~~~~~al~~l~~~g~v~iaTGR~~~~~~   53 (239)
T 1u02_A            3 LIFLDYDGTLVPIIMNPEES-----------------------------YADAGLLSLISDLKERFDTYIVTGRSPEEIS   53 (239)
T ss_dssp             EEEEECBTTTBCCCSCGGGC-----------------------------CCCHHHHHHHHHHHHHSEEEEECSSCHHHHH
T ss_pred             EEEEecCCCCcCCCCCcccC-----------------------------CCCHHHHHHHHHHhcCCCEEEEeCCCHHHHH
Confidence            57999999999864211000                             1345677778777643366666666666666


Q ss_pred             HHHhhh
Q 041003           93 MMAKLL   98 (282)
Q Consensus        93 ~v~~~l   98 (282)
                      .+++.+
T Consensus        54 ~~~~~l   59 (239)
T 1u02_A           54 RFLPLD   59 (239)
T ss_dssp             HHSCSS
T ss_pred             HHhccc
Confidence            665544

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=89.93  E-value=0.097  Score=42.96  Aligned_cols=73  Identities=15%  Similarity=0.100  Sum_probs=51.1

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      +...||+.++|+.+.+.+.++|.|++...     ++.+.-. .+|  +.+++.+++..      .+.+-++.++-+++++
T Consensus       104 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~-----l~~~~l~-~~f--~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  175 (230)
T 3vay_A          104 VQIFPEVQPTLEILAKTFTLGVITNGNAD-----VRRLGLA-DYF--AFALCAEDLGIGKPDPAPFLEALRRAKVDASAA  175 (230)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEESSCCC-----GGGSTTG-GGC--SEEEEHHHHTCCTTSHHHHHHHHHHHTCCGGGE
T ss_pred             CccCcCHHHHHHHHHhCCeEEEEECCchh-----hhhcCcH-HHe--eeeEEccccCCCCcCHHHHHHHHHHhCCCchhe
Confidence            45889999999999877999999999876     3333322 356  56676655432      1223334455688999


Q ss_pred             EEEcCCh
Q 041003          135 VIVDDTE  141 (282)
Q Consensus       135 vivDd~~  141 (282)
                      ++|+|+.
T Consensus       176 ~~vGD~~  182 (230)
T 3vay_A          176 VHVGDHP  182 (230)
T ss_dssp             EEEESCT
T ss_pred             EEEeCCh
Confidence            9999996

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=89.32  E-value=0.59  Score=39.36  Aligned_cols=16  Identities=25%  Similarity=0.289  Sum_probs=13.7

Q ss_pred             CCeeEEEeCCCceeee
Q 041003           10 KKLHLVLDLDQTLPHA   25 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs   25 (282)
                      ++..+++||||||+.+
T Consensus         5 ~~kli~~DlDGTLl~~   20 (246)
T 2amy_A            5 GPALCLFDVDGTLTAP   20 (246)
T ss_dssp             CSEEEEEESBTTTBCT
T ss_pred             CceEEEEECCCCcCCC
Confidence            4568899999999976

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=89.11  E-value=0.25  Score=39.92  Aligned_cols=77  Identities=13%  Similarity=0.105  Sum_probs=52.5

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      ....|++.++|+.+.+ .+.+.+.|++  ..+..+++.++-.. +|  +.+++.++...  +    +.+=++.++-++++
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~--~~~~~~l~~~~l~~-~f--~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~  164 (221)
T 2wf7_A           90 ADVYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLTG-YF--DAIADPAEVAASKPAPDIFIAAAHAVGVAPSE  164 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCC--TTHHHHHHHTTCGG-GC--SEECCTTTSSSCTTSSHHHHHHHHHTTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEcCc--HHHHHHHHHcChHH-Hc--ceEeccccCCCCCCChHHHHHHHHHcCCChhH
Confidence            3467999999999976 4999999998  56677777765433 45  44555554432  1    11223445557889


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      ++.|+|++.
T Consensus       165 ~i~iGD~~n  173 (221)
T 2wf7_A          165 SIGLEDSQA  173 (221)
T ss_dssp             EEEEESSHH
T ss_pred             eEEEeCCHH
Confidence            999999974

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=88.80  E-value=0.54  Score=39.86  Aligned_cols=35  Identities=11%  Similarity=0.216  Sum_probs=25.7

Q ss_pred             HHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCC
Q 041003           67 IRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPK  101 (282)
Q Consensus        67 l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~  101 (282)
                      ..+.|+++. +-..++|.|.-....+..+++.+...
T Consensus        22 ~~~~l~~l~~~g~~~~i~Tgr~~~~~~~~~~~~~~~   57 (249)
T 2zos_A           22 AKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVE   57 (249)
T ss_dssp             GHHHHHHHHHTTEEEEEBCSSCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence            456677775 45788888888788888888887654

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=88.71  E-value=0.27  Score=41.76  Aligned_cols=17  Identities=41%  Similarity=0.448  Sum_probs=14.2

Q ss_pred             CeeEEEeCCCceeeeec
Q 041003           11 KLHLVLDLDQTLPHAVD   27 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~   27 (282)
                      ...+++||||||+.+..
T Consensus         5 ~kli~fDlDGTLl~~~~   21 (274)
T 3fzq_A            5 YKLLILDIDGTLRDEVY   21 (274)
T ss_dssp             CCEEEECSBTTTBBTTT
T ss_pred             ceEEEEECCCCCCCCCC
Confidence            35789999999998854

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=88.66  E-value=0.71  Score=39.10  Aligned_cols=14  Identities=29%  Similarity=0.354  Sum_probs=12.4

Q ss_pred             eeEEEeCCCceeee
Q 041003           12 LHLVLDLDQTLPHA   25 (282)
Q Consensus        12 l~LVLDLD~TLihs   25 (282)
                      ..+++||||||+.+
T Consensus        18 ~~v~~DlDGTLl~~   31 (271)
T 1vjr_A           18 ELFILDMDGTFYLD   31 (271)
T ss_dssp             CEEEECCBTTTEET
T ss_pred             CEEEEcCcCcEEeC
Confidence            46899999999987

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=88.21  E-value=0.53  Score=41.32  Aligned_cols=54  Identities=26%  Similarity=0.187  Sum_probs=36.3

Q ss_pred             eeEEEeCCCceeee-eccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHH
Q 041003           12 LHLVLDLDQTLPHA-VDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRS   89 (282)
Q Consensus        12 l~LVLDLD~TLihs-~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~   89 (282)
                      ..+++||||||+.+ ...                                  +-|...+.|+++.+ -..+++.|.-...
T Consensus        28 kli~~DlDGTLl~~~~~~----------------------------------is~~~~~al~~l~~~Gi~v~iaTGR~~~   73 (301)
T 2b30_A           28 KLLLIDFDGTLFVDKDIK----------------------------------VPSENIDAIKEAIEKGYMVSICTGRSKV   73 (301)
T ss_dssp             CEEEEETBTTTBCCTTTC----------------------------------SCHHHHHHHHHHHHHTCEEEEECSSCHH
T ss_pred             cEEEEECCCCCcCCCCCc----------------------------------cCHHHHHHHHHHHHCCCEEEEEcCCCHH
Confidence            47899999999986 321                                  12445566666654 4677777777776


Q ss_pred             HHHHHH--hhhc
Q 041003           90 YAMMMA--KLLN   99 (282)
Q Consensus        90 Ya~~v~--~~ld   99 (282)
                      -+..++  +.+.
T Consensus        74 ~~~~~~~~~~l~   85 (301)
T 2b30_A           74 GILSAFGEENLK   85 (301)
T ss_dssp             HHHHHHCHHHHH
T ss_pred             HHHHHhhHHhhc
Confidence            677777  6554

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=88.18  E-value=0.24  Score=42.06  Aligned_cols=46  Identities=9%  Similarity=-0.031  Sum_probs=26.0

Q ss_pred             cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHH
Q 041003          209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQW  263 (282)
Q Consensus       209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~W  263 (282)
                      |....+..+++.+|..-        ..+++-+|+.. .-...|...|+..|...|
T Consensus       184 p~~~~~~~~~~~lgi~~--------~~~~~iGD~~~-~Di~~~~~aG~~~~~v~~  229 (266)
T 3pdw_A          184 PESIIMEQAMRVLGTDV--------SETLMVGDNYA-TDIMAGINAGMDTLLVHT  229 (266)
T ss_dssp             TSSHHHHHHHHHHTCCG--------GGEEEEESCTT-THHHHHHHHTCEEEEECC
T ss_pred             CCHHHHHHHHHHcCCCh--------hhEEEECCCcH-HHHHHHHHCCCeEEEECC
Confidence            44567788888887532        23444422212 335566667876665555

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=88.14  E-value=0.4  Score=40.82  Aligned_cols=14  Identities=21%  Similarity=0.527  Sum_probs=11.9

Q ss_pred             eeEEEeCCCceeee
Q 041003           12 LHLVLDLDQTLPHA   25 (282)
Q Consensus        12 l~LVLDLD~TLihs   25 (282)
                      ..+++||||||++.
T Consensus         2 k~i~~D~DGtL~~~   15 (263)
T 1zjj_A            2 VAIIFDMDGVLYRG   15 (263)
T ss_dssp             EEEEEECBTTTEET
T ss_pred             eEEEEeCcCceEeC
Confidence            36899999999974

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=87.72  E-value=0.23  Score=39.89  Aligned_cols=41  Identities=7%  Similarity=0.030  Sum_probs=34.4

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCC
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPK  101 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~  101 (282)
                      ..+.|++.++|+.+.+ .+.++|+|++...++..+++.+...
T Consensus        75 ~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~  116 (211)
T 1l7m_A           75 ITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLD  116 (211)
T ss_dssp             CCBCTTHHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCS
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC
Confidence            3567999999999975 4899999999999998888887654

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=87.34  E-value=0.72  Score=39.30  Aligned_cols=16  Identities=31%  Similarity=0.509  Sum_probs=13.5

Q ss_pred             CeeEEEeCCCceeeee
Q 041003           11 KLHLVLDLDQTLPHAV   26 (282)
Q Consensus        11 kl~LVLDLD~TLihs~   26 (282)
                      ...+++||||||+.+.
T Consensus         4 ~kli~~DlDGTLl~~~   19 (246)
T 3f9r_A            4 RVLLLFDVDGTLTPPR   19 (246)
T ss_dssp             SEEEEECSBTTTBSTT
T ss_pred             ceEEEEeCcCCcCCCC
Confidence            4678999999999864

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=87.31  E-value=1  Score=38.60  Aligned_cols=45  Identities=13%  Similarity=0.072  Sum_probs=30.7

Q ss_pred             chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEE
Q 041003            5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLC   83 (282)
Q Consensus         5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~   83 (282)
                      .++..- ..+++||||||+....                                   .-|+..++|+.+. +...+++.
T Consensus         9 ~~~~~~-k~i~~D~DGtL~~~~~-----------------------------------~~~~~~~~l~~l~~~g~~~~~~   52 (284)
T 2hx1_A            9 SLLPKY-KCIFFDAFGVLKTYNG-----------------------------------LLPGIENTFDYLKAQGQDYYIV   52 (284)
T ss_dssp             HHGGGC-SEEEECSBTTTEETTE-----------------------------------ECTTHHHHHHHHHHTTCEEEEE
T ss_pred             HHHhcC-CEEEEcCcCCcCcCCe-----------------------------------eChhHHHHHHHHHHCCCEEEEE
Confidence            344444 4689999999998521                                   1266777777775 45778888


Q ss_pred             cC
Q 041003           84 TT   85 (282)
Q Consensus        84 T~   85 (282)
                      |+
T Consensus        53 Tn   54 (284)
T 2hx1_A           53 TN   54 (284)
T ss_dssp             EC
T ss_pred             eC
Confidence            86

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=87.16  E-value=0.71  Score=38.55  Aligned_cols=17  Identities=24%  Similarity=0.204  Sum_probs=12.2

Q ss_pred             CeeEEEeCCCceeeeec
Q 041003           11 KLHLVLDLDQTLPHAVD   27 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~   27 (282)
                      -..+++||||||+.+..
T Consensus         7 ik~i~fDlDGTLld~~~   23 (259)
T 2ho4_A            7 LKAVLVDLNGTLHIEDA   23 (259)
T ss_dssp             CCEEEEESSSSSCC---
T ss_pred             CCEEEEeCcCcEEeCCE
Confidence            34789999999998643

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=87.02  E-value=0.12  Score=44.66  Aligned_cols=73  Identities=18%  Similarity=0.175  Sum_probs=53.7

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcC
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDD  139 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd  139 (282)
                      ..++||+.++|+.+.+. +.++|.|++.+..+..+++.+.-.. +|  ..++ .+    ...+-++.+....+.+++|.|
T Consensus       135 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~~-~f--~~~~-p~----~k~~~~~~l~~~~~~~~~VGD  206 (263)
T 2yj3_A          135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQE-YY--SNLS-PE----DKVRIIEKLKQNGNKVLMIGD  206 (263)
Confidence            35899999999999865 9999999999999999999886543 45  3333 11    122334445556678999999


Q ss_pred             Ch
Q 041003          140 TE  141 (282)
Q Consensus       140 ~~  141 (282)
                      ..
T Consensus       207 ~~  208 (263)
T 2yj3_A          207 GV  208 (263)
Confidence            86

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=87.04  E-value=0.93  Score=38.97  Aligned_cols=62  Identities=11%  Similarity=-0.015  Sum_probs=36.1

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh--cCceEEEEcCCc
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS--KMYDIYLCTTRI   87 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~--~~yei~i~T~~~   87 (282)
                      ....+++||||||+.+..    .+.....+                         ..+.+.|+.+.  +...+++.|...
T Consensus        21 ~~kliifDlDGTLlds~i----~~~~~~~l-------------------------~~~~~~l~~~~~~~g~~~~~~tGr~   71 (289)
T 3gyg_A           21 PQYIVFCDFDETYFPHTI----DEQKQQDI-------------------------YELEDYLEQKSKDGELIIGWVTGSS   71 (289)
T ss_dssp             CSEEEEEETBTTTBCSSC----CHHHHHHH-------------------------HHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             CCeEEEEECCCCCcCCCC----CcchHHHH-------------------------HHHHHHHHHHHhcCCcEEEEEcCCC
Confidence            456899999999999751    21111110                         01123334342  446677777666


Q ss_pred             HHHHHHHHhhhcC
Q 041003           88 RSYAMMMAKLLNP  100 (282)
Q Consensus        88 ~~Ya~~v~~~ldp  100 (282)
                      ..-+..+++.+.+
T Consensus        72 ~~~~~~~~~~~g~   84 (289)
T 3gyg_A           72 IESILDKMGRGKF   84 (289)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhhcc
Confidence            6667777777654

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=86.56  E-value=0.42  Score=41.70  Aligned_cols=17  Identities=18%  Similarity=0.196  Sum_probs=14.0

Q ss_pred             CeeEEEeCCCceeeeec
Q 041003           11 KLHLVLDLDQTLPHAVD   27 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~   27 (282)
                      ...+++||||||+.+..
T Consensus        37 iKli~fDlDGTLld~~~   53 (304)
T 3l7y_A           37 VKVIATDMDGTFLNSKG   53 (304)
T ss_dssp             CSEEEECCCCCCSCTTS
T ss_pred             eEEEEEeCCCCCCCCCC
Confidence            35789999999998753

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=86.15  E-value=0.44  Score=40.80  Aligned_cols=15  Identities=27%  Similarity=0.339  Sum_probs=12.8

Q ss_pred             eeEEEeCCCceeeee
Q 041003           12 LHLVLDLDQTLPHAV   26 (282)
Q Consensus        12 l~LVLDLD~TLihs~   26 (282)
                      ..+++||||||+.+.
T Consensus         4 kli~~DlDGTLl~~~   18 (271)
T 1rlm_A            4 KVIVTDMDGTFLNDA   18 (271)
T ss_dssp             CEEEECCCCCCSCTT
T ss_pred             cEEEEeCCCCCCCCC
Confidence            468999999999864

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=85.57  E-value=0.68  Score=39.09  Aligned_cols=16  Identities=25%  Similarity=0.231  Sum_probs=13.5

Q ss_pred             CeeEEEeCCCceeeee
Q 041003           11 KLHLVLDLDQTLPHAV   26 (282)
Q Consensus        11 kl~LVLDLD~TLihs~   26 (282)
                      ...+++||||||+.+.
T Consensus         5 ~k~v~fDlDGTL~~~~   20 (264)
T 1yv9_A            5 YQGYLIDLDGTIYLGK   20 (264)
T ss_dssp             CCEEEECCBTTTEETT
T ss_pred             CCEEEEeCCCeEEeCC
Confidence            4578999999999864

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=84.93  E-value=0.31  Score=39.62  Aligned_cols=39  Identities=13%  Similarity=0.237  Sum_probs=33.2

Q ss_pred             EEecccHHHHHHHHhc--CceEEEEcCCcHHHHHHHHhhhc
Q 041003           61 VKVRSYIRKFLKKASK--MYDIYLCTTRIRSYAMMMAKLLN   99 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~--~yei~i~T~~~~~Ya~~v~~~ld   99 (282)
                      +...||+.++|+.+.+  .+.+.|.|++.+.++..+++.++
T Consensus        74 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~~  114 (197)
T 1q92_A           74 LEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYA  114 (197)
T ss_dssp             CCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHhcCCCeEEEEeCCccchHHHHHHHhc
Confidence            5678999999999986  59999999999988877776653

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=84.52  E-value=0.86  Score=39.70  Aligned_cols=44  Identities=11%  Similarity=0.118  Sum_probs=29.4

Q ss_pred             hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEc
Q 041003            6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCT   84 (282)
Q Consensus         6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T   84 (282)
                      ++..-| .+++|+||||+....                                   .-|+..++|+.+. +...+++.|
T Consensus        17 ~~~~~k-~i~~D~DGTL~~~~~-----------------------------------~~~~~~~~l~~l~~~g~~~~~~T   60 (306)
T 2oyc_A           17 VLGRAQ-GVLFDCDGVLWNGER-----------------------------------AVPGAPELLERLARAGKAALFVS   60 (306)
T ss_dssp             HHHHCS-EEEECSBTTTEETTE-----------------------------------ECTTHHHHHHHHHHTTCEEEEEE
T ss_pred             HHhhCC-EEEECCCCcEecCCc-----------------------------------cCcCHHHHHHHHHHCCCeEEEEE
Confidence            344444 689999999986421                                   2356777777775 457777777


Q ss_pred             C
Q 041003           85 T   85 (282)
Q Consensus        85 ~   85 (282)
                      +
T Consensus        61 n   61 (306)
T 2oyc_A           61 N   61 (306)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=82.15  E-value=1  Score=39.83  Aligned_cols=80  Identities=9%  Similarity=0.094  Sum_probs=54.5

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccE------EEc---cCCCC------Cceecc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRL------ITR---EDFKE------KGKKSG  124 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv------~~r---~~~~~------~~~KdL  124 (282)
                      +..+||+.++|+.+.+. +.++|.|++...+++.+++.+.-.. +| ...+      ++.   ++...      .+.+=+
T Consensus       177 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~-~~-~~~l~~~d~~~tg~~~~~~~~~kpk~~~~~~~~  254 (335)
T 3n28_A          177 LPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDY-AQ-SNTLEIVSGKLTGQVLGEVVSAQTKADILLTLA  254 (335)
T ss_dssp             CCCCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSE-EE-EEEEEEETTEEEEEEESCCCCHHHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCe-EE-eeeeEeeCCeeeeeecccccChhhhHHHHHHHH
Confidence            45899999999999864 9999999999999999999987653 44 2221      110   11111      111122


Q ss_pred             ccccccCCceEEEcCChh
Q 041003          125 DLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus       125 ~~l~~~~~~vvivDd~~~  142 (282)
                      +.++-+++.+++|+|+..
T Consensus       255 ~~lgi~~~~~v~vGDs~n  272 (335)
T 3n28_A          255 QQYDVEIHNTVAVGDGAN  272 (335)
T ss_dssp             HHHTCCGGGEEEEECSGG
T ss_pred             HHcCCChhhEEEEeCCHH
Confidence            334457789999999974

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=82.04  E-value=0.44  Score=40.49  Aligned_cols=16  Identities=31%  Similarity=0.308  Sum_probs=13.2

Q ss_pred             eeEEEeCCCceeeeec
Q 041003           12 LHLVLDLDQTLPHAVD   27 (282)
Q Consensus        12 l~LVLDLD~TLihs~~   27 (282)
                      ..+++||||||+.+..
T Consensus         3 kli~~DlDGTLl~~~~   18 (261)
T 2rbk_A            3 KALFFDIDGTLVSFET   18 (261)
T ss_dssp             CEEEECSBTTTBCTTT
T ss_pred             cEEEEeCCCCCcCCCC
Confidence            3689999999998753

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=81.62  E-value=0.61  Score=38.00  Aligned_cols=17  Identities=24%  Similarity=0.389  Sum_probs=14.3

Q ss_pred             CeeEEEeCCCceeeeec
Q 041003           11 KLHLVLDLDQTLPHAVD   27 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~   27 (282)
                      ...+++||||||+.+..
T Consensus         4 ~k~iifDlDGTL~d~~~   20 (234)
T 2hcf_A            4 RTLVLFDIDGTLLKVES   20 (234)
T ss_dssp             CEEEEECCBTTTEEECT
T ss_pred             ceEEEEcCCCCcccCcc
Confidence            35789999999999864

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=81.25  E-value=1.1  Score=37.74  Aligned_cols=15  Identities=40%  Similarity=0.346  Sum_probs=12.9

Q ss_pred             CeeEEEeCCCceeee
Q 041003           11 KLHLVLDLDQTLPHA   25 (282)
Q Consensus        11 kl~LVLDLD~TLihs   25 (282)
                      ...+++||||||+.+
T Consensus        12 iKli~~DlDGTLl~~   26 (268)
T 3r4c_A           12 IKVLLLDVDGTLLSF   26 (268)
T ss_dssp             CCEEEECSBTTTBCT
T ss_pred             eEEEEEeCCCCCcCC
Confidence            457899999999984

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=81.18  E-value=0.54  Score=38.94  Aligned_cols=18  Identities=22%  Similarity=0.337  Sum_probs=15.0

Q ss_pred             CCeeEEEeCCCceeeeec
Q 041003           10 KKLHLVLDLDQTLPHAVD   27 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~   27 (282)
                      ....+++||||||+.+..
T Consensus        10 ~~k~viFDlDGTL~ds~~   27 (231)
T 2p11_A           10 HDIVFLFDCDNTLLDNDH   27 (231)
T ss_dssp             CSEEEEECCBTTTBCHHH
T ss_pred             CCeEEEEcCCCCCEecHH
Confidence            445899999999999864

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=80.87  E-value=0.6  Score=37.59  Aligned_cols=16  Identities=25%  Similarity=0.360  Sum_probs=13.7

Q ss_pred             eeEEEeCCCceeeeec
Q 041003           12 LHLVLDLDQTLPHAVD   27 (282)
Q Consensus        12 l~LVLDLD~TLihs~~   27 (282)
                      ..+++|+||||+++..
T Consensus         7 k~v~fDlDGTL~d~~~   22 (225)
T 3d6j_A            7 TVYLFDFDYTLADSSR   22 (225)
T ss_dssp             SEEEECCBTTTEECHH
T ss_pred             CEEEEeCCCCCCCCHH
Confidence            5789999999998753

>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A

Probab=80.65  E-value=3.1  Score=35.84  Aligned_cols=84  Identities=12%  Similarity=0.169  Sum_probs=52.6

Q ss_pred             cchhheeeccee---EEeeccCCCCccchhHHHHHHHHhCCeEeccc-----CC---------------CccEEEEcCCC
Q 041003          186 GKIQRQILVRCT---LFFSRDVDDKEFEFPLLKWRAGELGAACTDVY-----NL---------------SVAQVVSVSSR  242 (282)
Q Consensus       186 ~~~r~~vl~G~~---i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~-----~~---------------~vTHlV~~~~~  242 (282)
                      .+.++++|.|..   |.++.-+|++   ...+...++.+||+=...+     +.               ...+++.+...
T Consensus       129 ~~~~gkLf~~~~I~ciNls~dI~GG---~e~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K~  205 (256)
T 3t7k_A          129 TKLPTKVFERANIRCINLVNDIPGG---VDTIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTKA  205 (256)
T ss_dssp             TTSSSCHHHHTTCCEEEEETTCTTC---HHHHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSCH
T ss_pred             hccccccccCCcceeeeeccCCCCC---HHHHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEccH
Confidence            445678999995   4447778888   5778999999999633322     21               23455555211


Q ss_pred             CCcHHHHHHHH-----CCCceecHHHHHHHHHhCC
Q 041003          243 LGIKGHRLAEQ-----HNKFLVHPQWIYAAYYLWS  272 (282)
Q Consensus       243 ~~t~K~~~A~~-----~gi~IV~~~WL~~c~~~~~  272 (282)
                      ..+.+++...+     ..+-+|..+|.-.|+...+
T Consensus       206 ~q~k~Fkk~~~~~~~n~~~lvveWdWCVksIF~le  240 (256)
T 3t7k_A          206 SQVKKFTKLINDRDKNETILIVEWNWCVESIFHLN  240 (256)
T ss_dssp             HHHHHHHHHHHHHSTTSCEEEECHHHHHHHHHTTS
T ss_pred             HHHHHHHHHhhcccccceEEEEEcHHHHHHHhhee
Confidence            11222332221     2478999999999987543

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=80.07  E-value=0.56  Score=37.03  Aligned_cols=46  Identities=2%  Similarity=-0.241  Sum_probs=28.6

Q ss_pred             cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHH
Q 041003          209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYA  266 (282)
Q Consensus       209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~  266 (282)
                      |....+..+++.+|..          .+++-+  .+..-+..|...|+.++...|-..
T Consensus       138 p~~~~~~~~~~~~~~~----------~~~~iG--D~~~Di~~a~~aG~~~~~~~~~~~  183 (190)
T 2fi1_A          138 PNPESMLYLREKYQIS----------SGLVIG--DRPIDIEAGQAAGLDTHLFTSIVN  183 (190)
T ss_dssp             TSCHHHHHHHHHTTCS----------SEEEEE--SSHHHHHHHHHTTCEEEECSCHHH
T ss_pred             CCHHHHHHHHHHcCCC----------eEEEEc--CCHHHHHHHHHcCCeEEEECCCCC
Confidence            4456778888888754          234432  233456667778988776666443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d1ta0a_	181	c.108.1.16 (A:) Carboxy-terminal domain RNA polyme	3e-17
d1wf6a_	132	c.15.1.5 (A:) DNA topoisomerase II binding protein	4e-04
d1cdza_	96	c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Hom	0.001

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (185), Expect = 3e-17
 Identities = 30/188 (15%), Positives = 68/188 (36%), Gaps = 26/188 (13%)

Query: 8   RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYI 67
              K+ +V+DLD+TL H+    +  +     +                     V  R ++
Sbjct: 12  DSDKICVVIDLDETLVHSSFKPVNNADFIIPVE-----------IDGVVHQVYVLKRPHV 60

Query: 68  RKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLV 127
            +FL++  ++++  L T  +  YA  +A LL+    +       +    +    K    +
Sbjct: 61  DEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRL 120

Query: 128 LRQEWGVVIVDDTEKVWKDHKEHLMLLNG--------ALVNVLRVMKTVHGLFFENPVCG 179
            R    V+I+D++   +  H ++ + +           L ++L   + +           
Sbjct: 121 GRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLSR-------VD 173

Query: 180 DVRCFLGK 187
           DV   L +
Sbjct: 174 DVYSVLRQ 181

>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 132

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA topoisomerase II binding protein 1, TopBP1
domain: DNA topoisomerase II binding protein 1, TopBP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 3/91 (3%)

Query: 191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRL 250
            +L  C ++       K  +   L+      G    +  N  V  V+       +K    
Sbjct: 39  DLLDGCRIYLCGFSGRKLDK---LRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWN 95

Query: 251 AEQHNKFLVHPQWIYAAYYLWSRQVEKDYFP 281
              H   +V  +W+   +       E+ Y  
Sbjct: 96  KSAHRPHVVGAKWLLECFSKGYMLSEEPYIH 126

>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA-repair protein XRCC1
domain: DNA-repair protein XRCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 2/84 (2%)

Query: 196 CTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHN 255
              F   +    E     L            D  +  V  V++           L +  +
Sbjct: 9   KHFFLYGEFPGDERRK--LIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMDNPS 66

Query: 256 KFLVHPQWIYAAYYLWSRQVEKDY 279
              V P+WIY+          + Y
Sbjct: 67  LAFVRPRWIYSCNEKQKLLPHQLY 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	100.0
d1cdza_	96	DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta	99.73
d1wf6a_	132	DNA topoisomerase II binding protein 1, TopBP1 {Hu	99.72
d1t15a1	109	Breast cancer associated protein, BRCA1 {Human (Ho	99.7
d1t15a2	102	Breast cancer associated protein, BRCA1 {Human (Ho	99.63
d1in1a_	88	DNA ligase III alpha {Human (Homo sapiens) [TaxId:	99.38
d1l7ba_	92	NAD+-dependent DNA ligase, domain 4 {Thermus therm	99.36
d1kzyc1	153	53BP1 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	98.62
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	98.19
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	98.06
d1l0ba2	97	Breast cancer associated protein, BRCA1 {Rat (Ratt	98.06
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	97.95
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	97.75
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	97.75
d1kzyc2	106	53BP1 {Human (Homo sapiens) [TaxId: 9606]}	97.63
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	97.54
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	97.45
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	97.21
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	96.88
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	96.82
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	96.68
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	96.65
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	96.64
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	96.55
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	96.36
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	96.2
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	96.11
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	96.0
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	95.99
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	95.95
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	94.75
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	94.64
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	94.59
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	94.55
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	94.32
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	94.25
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	93.8
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	93.41
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	93.38
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	93.11
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	93.07
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	92.97
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	92.76
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	92.69
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	92.59
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	92.04
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	91.93
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	91.88
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	91.85
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	91.84
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	91.62
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	90.2
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	90.17
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	90.15
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	90.04
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	85.04
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	84.11
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	80.9

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-41  Score=285.87  Aligned_cols=161  Identities=20%  Similarity=0.238  Sum_probs=137.6

Q ss_pred             cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceee--cceeEEEEecccHHHHHHHHhcCceEE
Q 041003            4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKM--ASELFLVKVRSYIRKFLKKASKMYDIY   81 (282)
Q Consensus         4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~~v~~RP~l~~FL~~~~~~yei~   81 (282)
                      .+...++|++||||||||||||+..+...+.             ....+..  ....+||++|||+++||++++++|||+
T Consensus         8 ~~~~~~~k~~LVLDLDeTLihs~~~~~~~~~-------------~~~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~yei~   74 (181)
T d1ta0a_           8 AKAQDSDKICVVIDLDETLVHSSFKPVNNAD-------------FIIPVEIDGVVHQVYVLKRPHVDEFLQRMGELFECV   74 (181)
T ss_dssp             CCGGGTTSCEEEECCBTTTEEEESSCCTTCS-------------EEEEEEETTEEEEEEEEECTTHHHHHHHHHHHSEEE
T ss_pred             CCcccCCCeEEEEeCCCCEEccccCCCCCcc-------------ceeeecccceeeeeEEecCCCHHHHHHHHHhceEEE
Confidence            3456789999999999999999876432210             0111122  245789999999999999999999999


Q ss_pred             EEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC---CceeccccccccCCceEEEcCChhhhhhCccCeeeH----
Q 041003           82 LCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE---KGKKSGDLVLRQEWGVVIVDDTEKVWKDHKEHLMLL----  154 (282)
Q Consensus        82 i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~---~~~KdL~~l~~~~~~vvivDd~~~~~~~~~~N~i~i----  154 (282)
                      |||+|+++||++|++.|||++.++   ..++|++|..   .++|||+.++++++++|||||++.+|..||+|+|+|    
T Consensus        75 I~Ta~~~~YA~~il~~ldp~~~~~---~~~~r~~c~~~~~~~~KdL~~l~~~l~~vvivDd~~~~~~~~~~N~I~I~~f~  151 (181)
T d1ta0a_          75 LFTASLAKYADPVADLLDKWGAFR---ARLFRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWF  151 (181)
T ss_dssp             EECSSCHHHHHHHHHHHCSSCCEE---EEECGGGSEEETTEEECCGGGSCSCGGGEEEECSCGGGGTTCGGGBCCCCCCS
T ss_pred             EEcCCcHHHHHHHHHHhccCCcee---EEEEeeeeeecCCcccccHhhcCCCHHHeEEEcCChhhhhcCccCeeEecCcC
Confidence            999999999999999999998653   3478999964   688999999999999999999999999999999999    


Q ss_pred             ----HHHHHHHHHHHhHhhcccccCCCCCcccccccc
Q 041003          155 ----NGALVNVLRVMKTVHGLFFENPVCGDVRCFLGK  187 (282)
Q Consensus       155 ----D~~L~~l~~~L~~i~~~ff~~~~~~dvr~iL~~  187 (282)
                          |++|..++++|++++       ..+|||+++++
T Consensus       152 ~~~~D~eL~~l~~~L~~l~-------~~~DVR~~l~~  181 (181)
T d1ta0a_         152 DNMSDTELHDLLPFFEQLS-------RVDDVYSVLRQ  181 (181)
T ss_dssp             SCTTCCHHHHHHHHHHHHT-------TCSCHHHHHCC
T ss_pred             CCCCcHHHHHHHHHHHHHc-------cCCcHHHHhcC
Confidence                999999999999999       67999999874

>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA-repair protein XRCC1
domain: DNA-repair protein XRCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2.2e-18  Score=128.05  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=78.0

Q ss_pred             eeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHC--CCceecHHHHHHHH
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQH--NKFLVHPQWIYAAY  268 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~--gi~IV~~~WL~~c~  268 (282)
                      .+|+||+++++|.++..  ++..+.+++.++||++...+++++||+|+.  ...+.++..+.+.  +++||+|+||.+|+
T Consensus         4 d~F~g~~f~v~g~~~~~--~~~~l~~~i~~~GG~v~~~~~~~~THvI~~--~~~~~~~~~~~~~~~~i~iV~~~Wl~dc~   79 (96)
T d1cdza_           4 DFFQGKHFFLYGEFPGD--ERRKLIRYVTAFNGELEDYMSDRVQFVITA--QEWDPSFEEALMDNPSLAFVRPRWIYSCN   79 (96)
T ss_dssp             CTTTTCEEEECSCCCTH--HHHHHHHHHHHTTCEECSSCSTTCSEEECS--SCCCHHHHHHHTTCTTCEEECTHHHHHHH
T ss_pred             cccCCcEEEEeCCCCHH--HHHHHHHHHHHhCCEEeccCCCCceEEEEc--cCCcceeeehhhhCCCCeEEEEhHHHHHH
Confidence            57999999999976654  478899999999999999999999999998  6777788777654  79999999999999


Q ss_pred             HhCCcCCCCCCCCC
Q 041003          269 YLWSRQVEKDYFPL  282 (282)
Q Consensus       269 ~~~~r~~E~~y~~~  282 (282)
                      +.++.+||++|.++
T Consensus        80 ~~~~~lp~~~Y~i~   93 (96)
T d1cdza_          80 EKQKLLPHQLYGVV   93 (96)
T ss_dssp             TTTSCCCGGGGBCC
T ss_pred             HcCCcCCchhcEec
Confidence            99999999999763

>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA topoisomerase II binding protein 1, TopBP1
domain: DNA topoisomerase II binding protein 1, TopBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-18  Score=135.79  Aligned_cols=88  Identities=14%  Similarity=0.203  Sum_probs=76.0

Q ss_pred             hheeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHH--HHCCCceecHHHHHH
Q 041003          189 QRQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLA--EQHNKFLVHPQWIYA  266 (282)
Q Consensus       189 r~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A--~~~gi~IV~~~WL~~  266 (282)
                      ...+|.||+|+|+|+ +.  .++..+.+++..+||++...++++|||||+.  +..+.+++.+  ...+++||+++||++
T Consensus        37 ~~~~f~G~~i~isGf-~~--~~~~~l~~~i~~~GG~~~~~~~~~vTHvIv~--~~~~~~~~~~~~~~~~i~iV~~~Wl~~  111 (132)
T d1wf6a_          37 PEDLLDGCRIYLCGF-SG--RKLDKLRRLINSGGGVRFNQLNEDVTHVIVG--DYDDELKQFWNKSAHRPHVVGAKWLLE  111 (132)
T ss_dssp             CTTTTTTCEEEEESC-CS--HHHHHHHHHHHHTTCEEESSCCSSCCEEEES--SCCSHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred             chhhhCCeEEEEeeC-CC--HHHHHHHHHHHHcCCEEecccCCCceEEEec--CCCccHHHHHHHhcCCCCcCCHHHHHH
Confidence            346899999999996 32  3588899999999999999999999999999  6666666544  446899999999999


Q ss_pred             HHHhCCcCCCCCCCC
Q 041003          267 AYYLWSRQVEKDYFP  281 (282)
Q Consensus       267 c~~~~~r~~E~~y~~  281 (282)
                      |++.++++||++|.+
T Consensus       112 c~~~~~~l~~~~Y~~  126 (132)
T d1wf6a_         112 CFSKGYMLSEEPYIH  126 (132)
T ss_dssp             HHHHSSCCCSGGGBC
T ss_pred             HHHcCCcCCHHhCcC
Confidence            999999999999985

>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=9.4e-18  Score=127.99  Aligned_cols=83  Identities=17%  Similarity=0.064  Sum_probs=74.1

Q ss_pred             eeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCC----CCcHHHHHHHHCCCceecHHHHHHHHHhC
Q 041003          196 CTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSR----LGIKGHRLAEQHNKFLVHPQWIYAAYYLW  271 (282)
Q Consensus       196 ~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~----~~t~K~~~A~~~gi~IV~~~WL~~c~~~~  271 (282)
                      ++|++||+.+   .++..+.++++.+||+++.+++++|||||+.+..    ..|.|+..|...|++||+++||.+|++.+
T Consensus         2 ~~i~~SGl~~---~e~~~l~~~i~~~Gg~~~~~~~~~~THlI~~~~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~   78 (109)
T d1t15a1           2 MSMVVSGLTP---EEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSIKER   78 (109)
T ss_dssp             CEEEEESCCH---HHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHHHTT
T ss_pred             EEEEECCCCH---HHHHHHHHHHHHcCCEEEeEecCCccEEEEecCcchhhHhhHHHHHHHHCCCccccHHHHHHHHHhC
Confidence            5789999854   3578899999999999999999999999997432    24889999999999999999999999999


Q ss_pred             CcCCCCCCCC
Q 041003          272 SRQVEKDYFP  281 (282)
Q Consensus       272 ~r~~E~~y~~  281 (282)
                      +.+||++|.+
T Consensus        79 ~~l~e~~y~v   88 (109)
T d1t15a1          79 KMLNEHDFEV   88 (109)
T ss_dssp             SCCCGGGGBC
T ss_pred             CcCCchheEE
Confidence            9999999975

>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.6e-17  Score=119.92  Aligned_cols=90  Identities=17%  Similarity=0.221  Sum_probs=73.0

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccC-----CCccEEEEcCC---CCCcHHHHHHHHCCCceecH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYN-----LSVAQVVSVSS---RLGIKGHRLAEQHNKFLVHP  261 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~-----~~vTHlV~~~~---~~~t~K~~~A~~~gi~IV~~  261 (282)
                      +++|+||+|||+|.++..  ++..|.++++.+||+++.++.     ..+||+++...   +....+...|...|++||++
T Consensus         1 kkiF~g~~i~~~g~~~~~--~~~~L~~li~~~GG~v~~~~~~~~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~i~iV~~   78 (102)
T d1t15a2           1 RKIFRGLEICCYGPFTNM--PTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTR   78 (102)
T ss_dssp             SCTTTTCEEEECSCCSSS--CHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEH
T ss_pred             CCCCCCcEEEEeCCCCCc--CHHHHHHHHHHhCCEEeeccccccccccccchheecccccchhhHHHHHHHhCCCcEEee
Confidence            368999999999966543  578999999999999987653     46799988621   12344555677789999999


Q ss_pred             HHHHHHHHhCCcCCCCCCCC
Q 041003          262 QWIYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       262 ~WL~~c~~~~~r~~E~~y~~  281 (282)
                      +||.+|+.+++++||++|..
T Consensus        79 ~Wl~dsi~~~~~lp~~~Yll   98 (102)
T d1t15a2          79 EWVLDSVALYQCQELDTYLI   98 (102)
T ss_dssp             HHHHHHHHHTSCCCSGGGBC
T ss_pred             HHHHHHHHhCCcCCchhccC
Confidence            99999999999999999963

>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA ligase
domain: DNA ligase III alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-13  Score=100.39  Aligned_cols=72  Identities=18%  Similarity=0.275  Sum_probs=61.5

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCC-CccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNL-SVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAY  268 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~-~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~  268 (282)
                      .++|+||+++++|..|.    +..|++++.++||++..+++. ++||+|+.  +....        +.++|+|+||.+|+
T Consensus        14 ~diF~G~~~~i~~~~p~----~~~L~r~i~a~GG~~~~~~~~~~vTHvI~~--~~~~~--------~~~iV~p~Wi~dci   79 (88)
T d1in1a_          14 LDIFTGVRLYLPPSTPD----FSRLRRYFVAFDGDLVQEFDMTSATHVLGS--RDKNP--------AAQQVSPEWIWACI   79 (88)
T ss_dssp             CSSSTTCBCCCCTTSTT----HHHHHHHHHHHTCBCCCTTCCTTCCCEESC--CTTCT--------TSCEECHHHHHHHH
T ss_pred             hhHhCCeEEEECCCCCC----HHHHHHHHHHhCCEEeeeccCCCceEEEEc--CCCCC--------CcEEEehHHHHHHH
Confidence            67999999999887653    678999999999999988885 69999998  43322        46899999999999


Q ss_pred             HhCCcCC
Q 041003          269 YLWSRQV  275 (282)
Q Consensus       269 ~~~~r~~  275 (282)
                      +.++.+|
T Consensus        80 ~~~~lLP   86 (88)
T d1in1a_          80 RKRRLVA   86 (88)
T ss_dssp             HHTSCCC
T ss_pred             HcCCcCC
Confidence            9999887

>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA ligase
domain: NAD+-dependent DNA ligase, domain 4
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=5.4e-13  Score=97.88  Aligned_cols=85  Identities=13%  Similarity=0.021  Sum_probs=74.2

Q ss_pred             heeecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHH
Q 041003          190 RQILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYY  269 (282)
Q Consensus       190 ~~vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~  269 (282)
                      ..+|.|.+|||||.+..   .+..+..+++.+||+++..++..+||||++  +..+.|+..|.++||+||+.+|+.+.+.
T Consensus         5 ~~~l~G~~iv~TG~~~~---~R~e~~~~i~~~Gg~v~~sVs~~t~~LV~g--~~~g~K~~kA~~~gI~IisE~~f~~~l~   79 (92)
T d1l7ba_           5 GEALKGLTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVG--ENPGSKLEKARALGVPTLTEEELYRLLE   79 (92)
T ss_dssp             CCSSTTCEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEEC--SSSSTTHHHHHCSSSCCEEHHHHHHHHH
T ss_pred             CCCcCCCEEEEeCCccC---CHHHHHHHHHHhCCEEcCccccceeEEEEC--CCCCcHHHHHHHcCCcEecHHHHHHHHH
Confidence            56899999999999853   488999999999999999999999999998  5566899999999999999999999998


Q ss_pred             hCCcCCCCCC
Q 041003          270 LWSRQVEKDY  279 (282)
Q Consensus       270 ~~~r~~E~~y  279 (282)
                      ...-.+.+.+
T Consensus        80 ~~~~~~~~e~   89 (92)
T d1l7ba_          80 ARTGKKAEEL   89 (92)
T ss_dssp             HHHCSCSSSC
T ss_pred             hCCCCCHHHH
Confidence            7554444433

>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: 53BP1
domain: 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=8.5e-11  Score=93.91  Aligned_cols=69  Identities=9%  Similarity=-0.014  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHhCCeEecccCC------CccEEEEcCCCCCcHHHHHHHHCCCceecHHHHHHHHHhCCcCCCCCCC
Q 041003          211 FPLLKWRAGELGAACTDVYNL------SVAQVVSVSSRLGIKGHRLAEQHNKFLVHPQWIYAAYYLWSRQVEKDYF  280 (282)
Q Consensus       211 ~~~l~~~~~~~Ga~v~~~~~~------~vTHlV~~~~~~~t~K~~~A~~~gi~IV~~~WL~~c~~~~~r~~E~~y~  280 (282)
                      +......++.+||.+..+++.      ..+|||+.+ -..|.|+.+|.+.|++||+++||++|++.++.+||++|.
T Consensus        60 ~~~~~~~i~~~gg~v~~~~~~~~~~~~~~~~LIa~~-~~RT~Kyl~Ala~g~piv~~~Wi~~c~~~~~~ld~~~Yl  134 (153)
T d1kzyc1          60 KQYTESQLRAGAGYILEDFNEAQCNTAYQCLLIADQ-HCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYL  134 (153)
T ss_dssp             HHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEEESS-CCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSB
T ss_pred             hhhhhhhhhhcCCeEeeccccccccccceEEEecCC-CCchHHHHHHHccCCcEEcHHHHHHHHHcCCcCChHHcc
Confidence            344567889999999988763      356899982 246999999999999999999999999999999999997

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=9.7e-09  Score=82.03  Aligned_cols=122  Identities=15%  Similarity=-0.015  Sum_probs=75.7

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCc-H
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRI-R   88 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~-~   88 (282)
                      ++.+|+||||||+.+.......++....        .+.  .-.......+++.||+.++|+.+.+. +.+.|.|++. .
T Consensus         5 pK~viFDlDGTL~d~~~~~~~~~~~~~~--------~~~--~~~d~~~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~   74 (164)
T d1u7pa_           5 PKLAVFDLDYTLWPFWVDTHVDPPFHKS--------SDG--TVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEI   74 (164)
T ss_dssp             CSEEEECCBTTTBSSCTTTTCCSCEEEC--------TTS--CEEETTCCEECCCTTHHHHHHHHHHTTCCEEEEECCSCH
T ss_pred             CCEEEEcCCCcccCCccccccCccHhHH--------hcc--hHhhhhccccccchHHHHHHHHHHHCCCcEEEEeccccc
Confidence            4578999999999875543322111000        000  00112233578999999999999765 9999999765 5


Q ss_pred             HHHHHHHhhhcCCCcccccccEEEccCCCC-CceeccccccccCCceEEEcCChhhhh
Q 041003           89 SYAMMMAKLLNPKCEYHISSRLITREDFKE-KGKKSGDLVLRQEWGVVIVDDTEKVWK  145 (282)
Q Consensus        89 ~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~-~~~KdL~~l~~~~~~vvivDd~~~~~~  145 (282)
                      .++..+++.+.... +|  ..+........ .+.+-++.++-+.+.+|+|||++.-..
T Consensus        75 ~~~~~~l~~~~~~~-~~--~~~~~~~kp~~~~~~~~~~~~~~~~~~~l~igD~~~di~  129 (164)
T d1u7pa_          75 QGANQLLELFDLGK-YF--IQREIYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNII  129 (164)
T ss_dssp             HHHHHHHHHTTCGG-GC--SEEEESSSCHHHHHHHHHHHHCCCGGGEEEEESCHHHHH
T ss_pred             hhhccchhcccccc-cc--eeeecccCCChHHHHHHHHHhCCChHHEEEEcCCHHHHH
Confidence            78888888877664 34  22222111111 233344555668999999999985443

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.19  E-value=9.8e-08  Score=74.16  Aligned_cols=120  Identities=14%  Similarity=0.022  Sum_probs=69.5

Q ss_pred             CCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc
Q 041003            9 QKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI   87 (282)
Q Consensus         9 ~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~   87 (282)
                      .|++++|+|+||||+.+.......  +...                .    -....||+.++|+.+.+ -|+|++.|+..
T Consensus         5 ~kpk~vifDiDgTL~~~~~~~~~~--~~~~----------------~----~~~~~p~v~~~l~~l~~~G~~Iii~T~R~   62 (149)
T d1ltqa1           5 GKPKAVIFDVDGTLAKMNGRGPYD--LEKC----------------D----TDVINPMVVELSKMYALMGYQIVVVSGRE   62 (149)
T ss_dssp             TSCEEEEEETBTTTBCCSSCCTTC--GGGG----------------G----GCCBCHHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCcEEEEEcCCCcEeCCCCCcCC--cccc----------------c----cCccCHHHHHHHHHHHhccCeEEEEecCc
Confidence            466799999999999886542211  1100                0    02357999999999975 79999999988


Q ss_pred             HHHHHHHHhhhcCC--------CcccccccEEEccCCCCC---cee--ccccccccCCc-eEEEcCChhhhhhCccCee
Q 041003           88 RSYAMMMAKLLNPK--------CEYHISSRLITREDFKEK---GKK--SGDLVLRQEWG-VVIVDDTEKVWKDHKEHLM  152 (282)
Q Consensus        88 ~~Ya~~v~~~ldp~--------~~~f~~~rv~~r~~~~~~---~~K--dL~~l~~~~~~-vvivDd~~~~~~~~~~N~i  152 (282)
                      ..|+..+.+.|...        +..+  .....+..+...   ..|  -+..+..+... ++++||++..-.....++|
T Consensus        63 ~~~~~~t~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~k~~~l~~~~~~~~~i~~~igD~~~dv~a~~~~Gi  139 (149)
T d1ltqa1          63 SGTKEDPTKYYRMTRKWVEDIAGVPL--VMQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGV  139 (149)
T ss_dssp             CCCSSSTTHHHHHHHHHHHHTTCCCC--SEEEECCTTCCSCHHHHHHHHHHHHTTTTCEEEEEEECCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhhhhhcCCCcE--EEeecccccccCCchHHHHHHHHHhccCCCceEEEEcCCHHHHHHHHHCCC
Confidence            77766555555321        1112  333445544321   011  12223334444 4567999955443233444

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.06  E-value=1.6e-06  Score=70.32  Aligned_cols=80  Identities=20%  Similarity=0.140  Sum_probs=63.0

Q ss_pred             EEEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC----CceeccccccccCCceE
Q 041003           60 LVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE----KGKKSGDLVLRQEWGVV  135 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~----~~~KdL~~l~~~~~~vv  135 (282)
                      .....||+.++|+.+++.+.++|.|++.+.++..+++.+.-.. +|  +.++..++...    .+.+-+++++-++++++
T Consensus        82 ~~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~gl~~-~f--d~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~v  158 (210)
T d2ah5a1          82 EAQLFPQIIDLLEELSSSYPLYITTTKDTSTAQDMAKNLEIHH-FF--DGIYGSSPEAPHKADVIHQALQTHQLAPEQAI  158 (210)
T ss_dssp             SCEECTTHHHHHHHHHTTSCEEEEEEEEHHHHHHHHHHTTCGG-GC--SEEEEECSSCCSHHHHHHHHHHHTTCCGGGEE
T ss_pred             cccchhHHHHHHhhhhcccchhhcccccchhhhHHHHhhcccc-cc--cccccccccccccccccchhhhhhhcccccce
Confidence            4678999999999999999999999999999999999987664 57  56666555433    12333445566889999


Q ss_pred             EEcCChh
Q 041003          136 IVDDTEK  142 (282)
Q Consensus       136 ivDd~~~  142 (282)
                      +|+|+..
T Consensus       159 ~VGDs~~  165 (210)
T d2ah5a1         159 IIGDTKF  165 (210)
T ss_dssp             EEESSHH
T ss_pred             eecCCHH
Confidence            9999964

>d1l0ba2 c.15.1.3 (A:1705-1801) Breast cancer associated protein, BRCA1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.06  E-value=4.9e-06  Score=59.42  Aligned_cols=88  Identities=10%  Similarity=0.107  Sum_probs=59.2

Q ss_pred             eecceeEEeeccCCCCccchhHHHHHHHHhCCeEecccC-----CCccEEEEcCCCCCc--HHH-HHHHHCCCceecHHH
Q 041003          192 ILVRCTLFFSRDVDDKEFEFPLLKWRAGELGAACTDVYN-----LSVAQVVSVSSRLGI--KGH-RLAEQHNKFLVHPQW  263 (282)
Q Consensus       192 vl~G~~i~fsg~~~~~~~~~~~l~~~~~~~Ga~v~~~~~-----~~vTHlV~~~~~~~t--~K~-~~A~~~gi~IV~~~W  263 (282)
                      +|+|.-||+.|.+.+-  +...|..+.+..||+|+.+..     ...+-+|..+-+..|  +.+ ..|+..++.+|+.+|
T Consensus         1 lf~~~~icc~gpFt~m--t~d~Le~mv~lCGAsVvk~~~~l~~~~~~~~viVvqpda~t~~~~~~~i~~~~~~~vVtreW   78 (97)
T d1l0ba2           1 LFEGLQIYCCEPFTNM--PKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLVMWDW   78 (97)
T ss_dssp             CCTTCEEEECSCCSSS--CHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEEETHH
T ss_pred             CCCCceEEEEccccCC--CHHHHHHHHHHcCceeecChhhcCCCCCCeeEEEEcCCccccccccHHHHHhccccEEehhH
Confidence            5899999999988543  578899999999999998864     233445555212112  222 345567889999999


Q ss_pred             HHHHHHhCCcCCCCCCCC
Q 041003          264 IYAAYYLWSRQVEKDYFP  281 (282)
Q Consensus       264 L~~c~~~~~r~~E~~y~~  281 (282)
                      +.+|+...+.++-+.|++
T Consensus        79 vLDSIA~Y~~Q~l~~YL~   96 (97)
T d1l0ba2          79 VLDSISVYRCRDLDAYLV   96 (97)
T ss_dssp             HHHHHHTTSCCCGGGGBC
T ss_pred             hhhhhhheeeeehHhhhc
Confidence            999999999999888864

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.95  E-value=1.8e-06  Score=69.89  Aligned_cols=78  Identities=15%  Similarity=0.077  Sum_probs=58.3

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +.+.||+.++|+.+.+. +.+.|.|++.+ ++..+++.++-.+ +|  +.+++.++...      .+..-++.++-++++
T Consensus        81 ~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~-~~~~~l~~~gl~~-~f--~~i~~s~~~~~~Kp~~~~~~~~~~~~~~~p~~  156 (204)
T d2go7a1          81 VVLMPGAREVLAWADESGIQQFIYTHKGN-NAFTILKDLGVES-YF--TEILTSQSGFVRKPSPEAATYLLDKYQLNSDN  156 (204)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHHTCGG-GE--EEEECGGGCCCCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CcccchHHhhhhcccccccchhhhcccch-hhhhhhhhccccc-cc--ccccccccccccchhHHHHHHHHHHhCCCCce
Confidence            56789999999999765 99999998765 6788888887654 67  66776665432      122334455568899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +++|+|++.
T Consensus       157 ~l~VgD~~~  165 (204)
T d2go7a1         157 TYYIGDRTL  165 (204)
T ss_dssp             EEEEESSHH
T ss_pred             EEEEeCCHH
Confidence            999999974

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.75  E-value=4.4e-05  Score=62.46  Aligned_cols=79  Identities=18%  Similarity=0.124  Sum_probs=57.8

Q ss_pred             EEecccHHHHHHHHhcC--ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCCC------ceeccccc---cc
Q 041003           61 VKVRSYIRKFLKKASKM--YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKEK------GKKSGDLV---LR  129 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~--yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~~------~~KdL~~l---~~  129 (282)
                      +..-||+.++|+.+++.  +.+.|.|++.+..+..+++.++-.. +|  +-+++.++....      ...-+..+   +-
T Consensus        90 ~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~~~~~l~~~gl~~-~f--d~i~~~~~~~~~k~~p~~~~~~~~~~~~~~~  166 (228)
T d2hcfa1          90 ITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDH-YF--PFGAFADDALDRNELPHIALERARRMTGANY  166 (228)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCST-TC--SCEECTTTCSSGGGHHHHHHHHHHHHHCCCC
T ss_pred             ceecCchHHHHhhhhccccccccccCCCcchhhhhhhhhhcccc-cc--cccccccccccccchhHHHHHHhhhhcccCC
Confidence            46779999999999864  6889999999999999999988775 57  556666654321      11111222   23


Q ss_pred             cCCceEEEcCChh
Q 041003          130 QEWGVVIVDDTEK  142 (282)
Q Consensus       130 ~~~~vvivDd~~~  142 (282)
                      +++++++|.|++.
T Consensus       167 ~p~~~l~VGD~~~  179 (228)
T d2hcfa1         167 SPSQIVIIGDTEH  179 (228)
T ss_dssp             CGGGEEEEESSHH
T ss_pred             ChhHheeecCChH
Confidence            6789999999973

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.75  E-value=5.4e-05  Score=57.14  Aligned_cols=96  Identities=10%  Similarity=0.015  Sum_probs=64.2

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHh-cCceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Y   90 (282)
                      +++++|+||||.+... +.                             +-+-.|++-++|+++. +-+.|++||+-...+
T Consensus         1 mti~vDiDGTl~~~~~-~~-----------------------------~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~   50 (122)
T d2obba1           1 MTIAVDFDGTIVEHRY-PR-----------------------------IGEEIPFAVETLKLLQQEKHRLILWSVREGEL   50 (122)
T ss_dssp             CEEEECCBTTTBCSCT-TS-----------------------------CCCBCTTHHHHHHHHHHTTCEEEECCSCCHHH
T ss_pred             CEEEEEcCCCcCCCCC-Cc-----------------------------cccccHHHHHHHHHHHHCCCeEEEEecCCCcc
Confidence            4799999999975421 10                             0124689999999996 559999999999999


Q ss_pred             HHHHHhhhcCCCcccccccEEEccCCCCCceeccccccccCCceEEEcCChh
Q 041003           91 AMMMAKLLNPKCEYHISSRLITREDFKEKGKKSGDLVLRQEWGVVIVDDTEK  142 (282)
Q Consensus        91 a~~v~~~ldp~~~~f~~~rv~~r~~~~~~~~KdL~~l~~~~~~vvivDd~~~  142 (282)
                      -....+.|.-.+.-|  +.+.   .......+.=...++.+.--++|||+.-
T Consensus        51 ~~~t~~wL~~~~i~y--d~i~---~~~~~~~~~~~~~~~Kp~ad~yIDDKai   97 (122)
T d2obba1          51 LDEAIEWCRARGLEF--YAAN---KDYPEEERDHQGFSRKLKADLFIDDRNV   97 (122)
T ss_dssp             HHHHHHHHHTTTCCC--SEES---SSSTTC---CCSCCSSCCCSEEECTTST
T ss_pred             hHHHHHHHHHcCCCc--eehh---ccCccCccccceecCCccccEEEeCCcc
Confidence            999999998887544  3321   1111112222233455556689999874

>d1kzyc2 c.15.1.4 (C:1867-1972) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: 53BP1
domain: 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00012  Score=53.19  Aligned_cols=83  Identities=18%  Similarity=0.087  Sum_probs=54.7

Q ss_pred             eeecceeEEeeccCCCCccchhHHH-HHHHHhCCeEecccC---------C-CccEEEEcCCCCCcHHHHHHHHCCCcee
Q 041003          191 QILVRCTLFFSRDVDDKEFEFPLLK-WRAGELGAACTDVYN---------L-SVAQVVSVSSRLGIKGHRLAEQHNKFLV  259 (282)
Q Consensus       191 ~vl~G~~i~fsg~~~~~~~~~~~l~-~~~~~~Ga~v~~~~~---------~-~vTHlV~~~~~~~t~K~~~A~~~gi~IV  259 (282)
                      ++|+|.++.+.+.-+.+   ..++| .++...||+++....         . ..+-+|+. ..-...-.+.|...|+++|
T Consensus         1 npF~~l~vl~vs~~~~~---F~e~Ws~IL~~~Ga~vV~~~~~~~~~sd~~~~~~DVvvTD-~scp~~vl~~a~~~~ipvV   76 (106)
T d1kzyc2           1 NPFQNLKVLLVSDQQQN---FLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTD-PSCPASVLKCAEALQLPVV   76 (106)
T ss_dssp             CTTTTCEEEEEESCTTT---THHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEEC-TTCCHHHHHHHHHHTCCEE
T ss_pred             CCCcceEEEEEeccccc---HHHHHHHHHHhCCceEeeccccchhhccCccccccEEEeC-CCCCHHHHHHHHHcCCcEe
Confidence            47899877664432322   34566 677888887755321         1 24444443 2333444566888999999


Q ss_pred             cHHHHHHHHHhCCcCCCC
Q 041003          260 HPQWIYAAYYLWSRQVEK  277 (282)
Q Consensus       260 ~~~WL~~c~~~~~r~~E~  277 (282)
                      |.+|+-.|+-.+++++-.
T Consensus        77 S~EWVIQsLI~G~~~~~d   94 (106)
T d1kzyc2          77 SQEWVIQCLIVGERIGFK   94 (106)
T ss_dssp             CHHHHHHHHHHTSCCCTT
T ss_pred             eHHHHHHHHHccCcCCCC
Confidence            999999999999998754

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=1.9e-05  Score=64.49  Aligned_cols=42  Identities=14%  Similarity=0.208  Sum_probs=37.6

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKC  102 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~  102 (282)
                      +.++||+.++|+.+. +.+.++|.|++.+.+++.+++.+.+..
T Consensus        74 ~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~i~~~l~~l~~~~  116 (226)
T d2feaa1          74 AKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKD  116 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSCGG
T ss_pred             cchhHHHHHHHHHHHhcccccccCCcchhhhHHHHHHHcCCcc
Confidence            568999999999995 569999999999999999999887654

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=97.45  E-value=0.00011  Score=60.32  Aligned_cols=106  Identities=15%  Similarity=0.112  Sum_probs=63.7

Q ss_pred             cCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCC
Q 041003            8 RQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTR   86 (282)
Q Consensus         8 ~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~   86 (282)
                      ..+-..|.||+||||++...-. .. +.                        -+++-||+.+.|+++.+ -|.++|.|+.
T Consensus        20 p~~~~Aif~DrDGtl~~~~~y~-~~-~~------------------------~~~l~pgv~e~L~~L~~~G~~l~IvTNQ   73 (209)
T d2o2xa1          20 PPHLPALFLDRDGTINVDTDYP-SD-PA------------------------EIVLRPQMLPAIATANRAGIPVVVVTNQ   73 (209)
T ss_dssp             CSSCCCEEECSBTTTBCCCSCT-TC-GG------------------------GCCBCGGGHHHHHHHHHHTCCEEEEEEC
T ss_pred             CCCCCEEEEeCCCCeECCCCCC-CC-HH------------------------HeEecccHHHHHHHHHhhCCeEEEeccc
Confidence            3444678999999999853211 00 00                        02467999999999976 5999999985


Q ss_pred             c------------HHHHHHHHhhhcCCCcccccccEEEc------------cCCC--C----CceeccccccccCCceEE
Q 041003           87 I------------RSYAMMMAKLLNPKCEYHISSRLITR------------EDFK--E----KGKKSGDLVLRQEWGVVI  136 (282)
Q Consensus        87 ~------------~~Ya~~v~~~ldp~~~~f~~~rv~~r------------~~~~--~----~~~KdL~~l~~~~~~vvi  136 (282)
                      +            ....+.+.+.+...+..+  ..+++.            .+|.  +    +..+-++.++-+++++++
T Consensus        74 ~gi~~g~~~~~~~~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~rKP~p~ml~~a~~~~~i~~~~~~~  151 (209)
T d2o2xa1          74 SGIARGYFGWSAFAAVNGRVLELLREEGVFV--DMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLI  151 (209)
T ss_dssp             HHHHTTSCCHHHHHHHHHHHHHHHHHTTCCC--SEEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHHTCCGGGCEE
T ss_pred             ccchhhhhhhhhhhhhhhHHHHHhhhccccc--ceEEEecccccccccccccccccccccchhhhHhHHHhCCCccceEE
Confidence            4            233344555554444332  333322            1222  1    122333344557899999


Q ss_pred             EcCCh
Q 041003          137 VDDTE  141 (282)
Q Consensus       137 vDd~~  141 (282)
                      |-|+.
T Consensus       152 VGD~~  156 (209)
T d2o2xa1         152 VGDKL  156 (209)
T ss_dssp             EESSH
T ss_pred             eCCCH
Confidence            99986

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00024  Score=55.81  Aligned_cols=106  Identities=12%  Similarity=0.071  Sum_probs=59.4

Q ss_pred             CeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc--
Q 041003           11 KLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI--   87 (282)
Q Consensus        11 kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~--   87 (282)
                      |+.++||.||||+......  .     +               .... -.+++-||+.+.|+.+.+ .|.++|+|+.+  
T Consensus         2 ~K~i~~D~DGtL~~~~~~~--~-----~---------------~~~~-~~~~~~pgv~e~L~~L~~~g~~l~i~TNq~~i   58 (161)
T d2fpwa1           2 QKYLFIDRDGTLISEPPSD--F-----Q---------------VDRF-DKLAFEPGVIPQLLKLQKAGYKLVMITNQDGL   58 (161)
T ss_dssp             CEEEEECCBTTTBCCC--C--C-----C---------------CCSG-GGCCBCTTHHHHHHHHHHTTEEEEEEEECTTT
T ss_pred             CcEEEEeCCCCeEeeCCCC--C-----c---------------cCCH-HHceECccHHHHHHHHHHcCCceeeecccccc
Confidence            5688999999999743211  0     0               0000 013578999999999975 59999999864  


Q ss_pred             ------HHH----HHHHHhhhcCCCcccccccEE-----EccCCC--C----CceeccccccccCCceEEEcCCh
Q 041003           88 ------RSY----AMMMAKLLNPKCEYHISSRLI-----TREDFK--E----KGKKSGDLVLRQEWGVVIVDDTE  141 (282)
Q Consensus        88 ------~~Y----a~~v~~~ldp~~~~f~~~rv~-----~r~~~~--~----~~~KdL~~l~~~~~~vvivDd~~  141 (282)
                            +.-    -..+.+.+...+..+  +.++     ..++|.  +    +..+=++..+-+++++++|-|+.
T Consensus        59 a~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~~~id~~~~~~IGD~~  131 (161)
T d2fpwa1          59 GTQSFPQADFDGPHNLMMQIFTSQGVQF--DEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIGDRA  131 (161)
T ss_dssp             TSTTSCHHHHHHHHHHHHHHHHHTTCCE--EEEEEECCCGGGCCSSSTTSSGGGGGGC----CCGGGCEEEESSH
T ss_pred             hhHHHHHHHhhhhhhhhhhhcccccccc--ceeeeccccccccccccccccHHHHHHHHhcCCChhcEEEECCCH
Confidence                  111    122334444444322  2222     234443  2    22233333445789999999986

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=96.88  E-value=0.00034  Score=56.02  Aligned_cols=79  Identities=9%  Similarity=0.012  Sum_probs=62.6

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      +...||+.++|+.+.+.+-+.|.|++.+..+..+++.+.-.. +|  +.+++.++...      .+.+-+++++.+++++
T Consensus        81 ~~~~~g~~~~L~~l~~~~~~~ivT~~~~~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~  157 (207)
T d2hdoa1          81 IELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYPFMM-RM--AVTISADDTPKRKPDPLPLLTALEKVNVAPQNA  157 (207)
T ss_dssp             CEECTTHHHHHHHSCTTSEEEEECSSCHHHHHHHHTTSGGGG-GE--EEEECGGGSSCCTTSSHHHHHHHHHTTCCGGGE
T ss_pred             cccccchhhhhhhhcccccccccccccccccccccccccccc-cc--cccccccccccchhhhhhhcccccceeeeccce
Confidence            568899999999999889999999999999999999886554 57  66677666542      1234445566688999


Q ss_pred             EEEcCChh
Q 041003          135 VIVDDTEK  142 (282)
Q Consensus       135 vivDd~~~  142 (282)
                      ++|+|++.
T Consensus       158 l~VgDs~~  165 (207)
T d2hdoa1         158 LFIGDSVS  165 (207)
T ss_dssp             EEEESSHH
T ss_pred             eEecCCHH
Confidence            99999873

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.82  E-value=0.00035  Score=56.95  Aligned_cols=83  Identities=16%  Similarity=0.020  Sum_probs=63.9

Q ss_pred             EEEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           60 LVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      +...+||+.+||+.+++.|.++|.|++.+.+...+++.++-.+ +|  +.+++.++...      .+.+-+++++-++++
T Consensus        98 ~~~~~p~~~~~L~~l~~~~~i~i~Sn~~~~~~~~~l~~~gl~~-~f--d~i~~s~~~~~~KP~~~~~~~~~~~l~~~p~~  174 (230)
T d1x42a1          98 YGELYPEVVEVLKSLKGKYHVGMITDSDTEYLMAHLDALGIKD-LF--DSITTSEEAGFFKPHPRIFELALKKAGVKGEE  174 (230)
T ss_dssp             HCCBCTTHHHHHHHHBTTBEEEEEESSCHHHHHHHHHHHTCGG-GC--SEEEEHHHHTBCTTSHHHHHHHHHHHTCCGGG
T ss_pred             hCcccccHHHHHHHhhccCceeeeeccccccchhhhccccccc-cc--ccccccccccccchhhHHHHHHHhhhcccccc
Confidence            3567899999999999999999999999999999999987654 57  67777665432      133344556667889


Q ss_pred             eEEEcCCh--hhhh
Q 041003          134 VVIVDDTE--KVWK  145 (282)
Q Consensus       134 vvivDd~~--~~~~  145 (282)
                      +++|+|++  +...
T Consensus       175 ~l~vgD~~~~Di~~  188 (230)
T d1x42a1         175 AVYVGDNPVKDCGG  188 (230)
T ss_dssp             EEEEESCTTTTHHH
T ss_pred             cceeecCcHhHHHH
Confidence            99998875  3554

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.00023  Score=57.30  Aligned_cols=78  Identities=12%  Similarity=-0.039  Sum_probs=52.0

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCC----cHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccccc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTR----IRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLR  129 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~----~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~  129 (282)
                      .+.+|++.++|.++.+ .+.+.+.|++    ...+...+.......+ +|  +.+++-++...      .+.+-++.++-
T Consensus        96 ~~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~~-~f--d~i~~s~~~~~~KP~p~~~~~~~~~~~v  172 (222)
T d1cr6a1          96 RSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQ-HF--DFLIESCQVGMIKPEPQIYNFLLDTLKA  172 (222)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHGG-GC--SEEEEHHHHSCCTTCHHHHHHHHHHHTS
T ss_pred             CCCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChHh-hh--ceeeehhhccCCCCChHHHHHHHHHhCC
Confidence            4689999999999975 4899999974    3344455554444333 56  66676655432      23334444555


Q ss_pred             cCCceEEEcCCh
Q 041003          130 QEWGVVIVDDTE  141 (282)
Q Consensus       130 ~~~~vvivDd~~  141 (282)
                      +++++|+|+|+.
T Consensus       173 ~p~~~l~IgD~~  184 (222)
T d1cr6a1         173 KPNEVVFLDDFG  184 (222)
T ss_dssp             CTTSEEEEESSS
T ss_pred             CcceEEEEECCH
Confidence            788999999986

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0011  Score=53.17  Aligned_cols=80  Identities=8%  Similarity=-0.022  Sum_probs=62.4

Q ss_pred             EecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           62 KVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        62 ~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      ...||+.++|+.+. +.+.+.|.|++.+.++..+++.+.-.. +|  +.+++.++-..      .+.+-+++++-+++++
T Consensus        88 ~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~~l~~-~F--~~i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~  164 (218)
T d1te2a_          88 PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRD-SF--DALASAEKLPYSKPHPQVYLDCAAKLGVDPLTC  164 (218)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEECTTSSCCTTSTHHHHHHHHHHTSCGGGE
T ss_pred             cccchHHHHHHHhhhccccccccccccccccccccccccccc-cc--cccccccccccchhhHHHHHHHHHHcCCCchhc
Confidence            35799999999996 459999999999999999999987654 78  66777765432      1344555566688999


Q ss_pred             EEEcCChhhh
Q 041003          135 VIVDDTEKVW  144 (282)
Q Consensus       135 vivDd~~~~~  144 (282)
                      ++|+|++.-.
T Consensus       165 l~igD~~~di  174 (218)
T d1te2a_         165 VALEDSVNGM  174 (218)
T ss_dssp             EEEESSHHHH
T ss_pred             EEEeeCHHHH
Confidence            9999998433

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=96.64  E-value=0.0011  Score=49.80  Aligned_cols=70  Identities=21%  Similarity=0.212  Sum_probs=50.1

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHH-hcCceEEEEcCCc---
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKA-SKMYDIYLCTTRI---   87 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~-~~~yei~i~T~~~---   87 (282)
                      .++++||||||.+....   ..  .                       ..+..|++-++|..+ ++-+.|+|||+-.   
T Consensus         2 K~i~~DiDGTI~~~~~~---~y--~-----------------------~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~   53 (124)
T d1xpja_           2 KKLIVDLDGTLTQANTS---DY--R-----------------------NVLPRLDVIEQLREYHQLGFEIVISTARNMRT   53 (124)
T ss_dssp             CEEEECSTTTTBCCCCS---CG--G-----------------------GCCBCHHHHHHHHHHHHTTCEEEEEECTTTTT
T ss_pred             CEEEEeCCCCeECCCCC---Cc--C-----------------------ccCcCHHHHHHHHHHHHCCCEEEEEecCCccc
Confidence            37899999999765321   10  0                       124678999999999 6779999999973   


Q ss_pred             ---------HHHHHHHHhhhcCCCcccccccEE
Q 041003           88 ---------RSYAMMMAKLLNPKCEYHISSRLI  111 (282)
Q Consensus        88 ---------~~Ya~~v~~~ldp~~~~f~~~rv~  111 (282)
                               ..+.+...+.|.-.+.-|  +.++
T Consensus        54 ~~~~~~~~~~~~~~~T~~wL~~~gI~Y--d~Li   84 (124)
T d1xpja_          54 YEGNVGKINIHTLPIITEWLDKHQVPY--DEIL   84 (124)
T ss_dssp             TTTCHHHHHHHTHHHHHHHHHHTTCCC--SEEE
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHcCCCc--eEEE
Confidence                     456677888888777434  4443

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=4.5e-05  Score=59.63  Aligned_cols=84  Identities=10%  Similarity=0.030  Sum_probs=58.5

Q ss_pred             eEEEEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhh-cCCCcccccccEEEccCCCC------Cceeccccccc
Q 041003           58 LFLVKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLL-NPKCEYHISSRLITREDFKE------KGKKSGDLVLR  129 (282)
Q Consensus        58 ~~~v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~l-dp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~  129 (282)
                      ..+....|++.+++..+. +.+.+.+.|++....+...+... ... .+|  +.+++.++...      .+..-+++++-
T Consensus        80 ~~~~~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~~~~~~~~~~l~-~~f--d~v~~s~~~~~~Kp~~~~~~~~~~~~~~  156 (197)
T d2b0ca1          80 AVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIR-DAA--DHIYLSQDLGMRKPEARIYQHVLQAEGF  156 (197)
T ss_dssp             TCEEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHH-HHC--SEEEEHHHHTCCTTCHHHHHHHHHHHTC
T ss_pred             HhccccCchhHHHHHHHHhcCCeEEEEeCccHHHHHHHHHHcccch-hhc--cceeecccccccccchHHHHHHHHhcCC
Confidence            466889999999998885 67999999999988877665554 222 246  55666554332      12334455556


Q ss_pred             cCCceEEEcCChhhh
Q 041003          130 QEWGVVIVDDTEKVW  144 (282)
Q Consensus       130 ~~~~vvivDd~~~~~  144 (282)
                      +++++++|+|++.-.
T Consensus       157 ~~~~~l~vgDs~~di  171 (197)
T d2b0ca1         157 SPSDTVFFDDNADNI  171 (197)
T ss_dssp             CGGGEEEEESCHHHH
T ss_pred             CCCeEEEEeCCHHHH
Confidence            789999999998543

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=96.36  E-value=0.0021  Score=51.27  Aligned_cols=82  Identities=9%  Similarity=0.047  Sum_probs=62.0

Q ss_pred             EEEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~  132 (282)
                      ..++.||+.++|+.+.+. +.++|.|++.+.++..+++.++-.. +|  +.+++.++...      .+..-+++++.+.+
T Consensus        93 ~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~~~~~l~~~gl~~-~f--~~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~  169 (224)
T d2hsza1          93 ISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGIDH-LF--SEMLGGQSLPEIKPHPAPFYYLCGKFGLYPK  169 (224)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG-GC--SEEECTTTSSSCTTSSHHHHHHHHHHTCCGG
T ss_pred             ccchHHHHHHHHHHHhccCCcccccccccHHHHHHHHHhcCchh-hc--cccccccccccccccchhhHHHHHHhhhhhh
Confidence            467899999999999764 9999999999999999999997654 67  55565555432      12233344556889


Q ss_pred             ceEEEcCChhhh
Q 041003          133 GVVIVDDTEKVW  144 (282)
Q Consensus       133 ~vvivDd~~~~~  144 (282)
                      .+++|+|++.-.
T Consensus       170 ~~~~igD~~~Di  181 (224)
T d2hsza1         170 QILFVGDSQNDI  181 (224)
T ss_dssp             GEEEEESSHHHH
T ss_pred             ccchhcCcHHHH
Confidence            999999997443

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.0024  Score=51.99  Aligned_cols=78  Identities=19%  Similarity=0.129  Sum_probs=60.7

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      ....||+.++|+.+++.+.++|.|++...+...+++...-. .+|  +.+++.++...      .+.+=+++++-+++++
T Consensus       108 ~~~~~~~~~~L~~L~~~~~l~i~Tn~~~~~~~~~l~~~gl~-~~f--d~i~~s~~~~~~KP~p~~~~~~~~~~~~~~~~~  184 (247)
T d2gfha1         108 MILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQ-SYF--DAIVIGGEQKEEKPAPSIFYHCCDLLGVQPGDC  184 (247)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHHTCG-GGC--SEEEEGGGSSSCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             CccCccHHHHHHHhhcccceEEeecccchhhhhhhhhcccc-ccc--cccccccccccchhhhhhHHHHHHHhhcCHHhc
Confidence            34679999999999999999999999999999999998754 367  66777776542      1233344455678899


Q ss_pred             EEEcCCh
Q 041003          135 VIVDDTE  141 (282)
Q Consensus       135 vivDd~~  141 (282)
                      ++|.|+.
T Consensus       185 l~iGD~~  191 (247)
T d2gfha1         185 VMVGDTL  191 (247)
T ss_dssp             EEEESCT
T ss_pred             ceeccCh
Confidence            9998885

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=96.11  E-value=0.0013  Score=54.27  Aligned_cols=80  Identities=16%  Similarity=0.065  Sum_probs=62.7

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------Cceeccccccc-cCC
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLR-QEW  132 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~-~~~  132 (282)
                      +...||+.++|+.+.+. +.+.|.|++.+.++..+++.++-.+ +| .+.+++.+++..      .+.+-+.+++. +.+
T Consensus        98 ~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~~~~~l~~~~l~~-~f-~d~~~~~d~~~~~KP~p~~~~~~~~~l~~~p~~  175 (257)
T d1swva_          98 ASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQG-YK-PDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMN  175 (257)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHTT-CC-CSCCBCGGGSSCCTTSSHHHHHHHHHHTCCSGG
T ss_pred             CccCCcHHHHHHHHHhcccceeecCCCchhhHHHHHHHHhhcc-cc-cccccccccccccccChHHHHHHHHHhCCCCcc
Confidence            46889999999999765 9999999999999999999987665 34 366677776643      24555666665 568


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      .+|+|+|+..
T Consensus       176 ~~v~VgDs~~  185 (257)
T d1swva_         176 HMIKVGDTVS  185 (257)
T ss_dssp             GEEEEESSHH
T ss_pred             eEEEEeCChh
Confidence            9999999973

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0044  Score=49.59  Aligned_cols=54  Identities=15%  Similarity=0.058  Sum_probs=38.0

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHH
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRS   89 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~   89 (282)
                      ++..+++||||||+++...                                  +-|...+.|+++.+...+++.|.+...
T Consensus         2 ~~kl~~fDlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~g~~~i~Tgr~~~   47 (243)
T d2amya1           2 GPALCLFDVDGTLTAPRQK----------------------------------ITKEMDDFLQKLRQKIKIGVVGGSDFE   47 (243)
T ss_dssp             CSEEEEEESBTTTBCTTSC----------------------------------CCHHHHHHHHHHTTTSEEEEECSSCHH
T ss_pred             CCEEEEEcCcCCeeCCCCc----------------------------------CCHHHHHHHHHHHcCCCEEEEcCCChH
Confidence            5667788999999975321                                  235567888888887778887777766


Q ss_pred             HHHHHHhh
Q 041003           90 YAMMMAKL   97 (282)
Q Consensus        90 Ya~~v~~~   97 (282)
                      .+......
T Consensus        48 ~~~~~~~~   55 (243)
T d2amya1          48 KVQEQLGN   55 (243)
T ss_dssp             HHHHHHCT
T ss_pred             HhHHHHhh
Confidence            66555543

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0018  Score=52.70  Aligned_cols=42  Identities=19%  Similarity=0.239  Sum_probs=37.4

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCC
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPK  101 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~  101 (282)
                      .++++||+.++++++.+ .+.++|-|++...+++++++.+.-.
T Consensus        80 ~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~v~~i~~~lgi~  122 (217)
T d1nnla_          80 PPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIP  122 (217)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCC
T ss_pred             ccccCHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhCCc
Confidence            36689999999999976 5999999999999999999998644

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0025  Score=51.45  Aligned_cols=61  Identities=20%  Similarity=0.151  Sum_probs=42.6

Q ss_pred             chhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEE
Q 041003            5 MVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLC   83 (282)
Q Consensus         5 ~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~   83 (282)
                      +.++.++..+++|+||||+.........           ....           =+..+.|++.+.|+.+.+ .|.++|.
T Consensus        15 ~~~~~~~Kia~fDrDGtLik~~~~~~~~-----------~~~~-----------d~~~l~~~v~~~i~~L~~~gy~iiIv   72 (195)
T d1yj5a1          15 SGVKPQGKVAAFDLDGTLITTRSGKVFP-----------TSPS-----------DWRILYPEIPKKLQELAAEGYKLVIF   72 (195)
T ss_dssp             TTCCCCSCEEEECSBTTTEECSSSCSSC-----------SSTT-----------CCEESCTTHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCcCcEEEEECCCceEeeCCCCcCC-----------CChh-----------hceeccCCHHHHHHHHHhCCcEEEEe
Confidence            3456677888999999999875421000           0000           134568999999999975 6999999


Q ss_pred             cCCc
Q 041003           84 TTRI   87 (282)
Q Consensus        84 T~~~   87 (282)
                      |+.+
T Consensus        73 TNQ~   76 (195)
T d1yj5a1          73 TNQM   76 (195)
T ss_dssp             EECH
T ss_pred             cCcc
Confidence            9964

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=94.75  E-value=0.011  Score=47.17  Aligned_cols=81  Identities=6%  Similarity=-0.047  Sum_probs=58.0

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCC--C----CceeccccccccCC
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFK--E----KGKKSGDLVLRQEW  132 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~--~----~~~KdL~~l~~~~~  132 (282)
                      ....+||+.++|+++.+ .+.++|.|++.+..+..+++.+.-.. +| .....+-++..  +    .+..-+++++-+++
T Consensus       125 ~~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~~~~~~~~~~~~~-~~-~~~~~~~d~~~~~KP~p~~~~~~~~~~~~~p~  202 (253)
T d1zs9a1         125 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGD-IL-ELVDGHFDTKIGHKVESESYRKIADSIGCSTN  202 (253)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBC-CG-GGCSEEECGGGCCTTCHHHHHHHHHHHTSCGG
T ss_pred             ccccCCCHHHHHHHHhhccCceeecCCCcHHHHHHHHHHcCcch-hh-hhcceeeccccccCCCcHHHHHHHHHhCCCcC
Confidence            35678999999999965 59999999999999988888775443 44 22222222221  1    24455666677889


Q ss_pred             ceEEEcCChh
Q 041003          133 GVVIVDDTEK  142 (282)
Q Consensus       133 ~vvivDd~~~  142 (282)
                      ++++|+|+..
T Consensus       203 ~~l~vgD~~~  212 (253)
T d1zs9a1         203 NILFLTDVTR  212 (253)
T ss_dssp             GEEEEESCHH
T ss_pred             cEEEEeCCHH
Confidence            9999999974

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=94.64  E-value=0.024  Score=44.72  Aligned_cols=78  Identities=5%  Similarity=-0.020  Sum_probs=61.4

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      ....|++.++|+.+. +.+.+.+.|++...++..+++...... +|  +.+++.++...      .+.+-+++++-++++
T Consensus        92 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~~-~f--d~~~~s~~~~~~KP~p~~~~~~~~~~g~~p~e  168 (220)
T d1zrna_          92 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRD-GF--DHLLSVDPVQVYKPDNRVYELAEQALGLDRSA  168 (220)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEESGGGTCCTTSHHHHHHHHHHHTSCGGG
T ss_pred             ccccchhHHHHHHHHhcCCeEEeecchHHHHHHHHHhhccccc-cc--cceeeeeeeeccccHHHHHHHHHHHhCCCCce
Confidence            457899999999995 668999999999999999998876654 56  66677666542      233445667778899


Q ss_pred             eEEEcCCh
Q 041003          134 VVIVDDTE  141 (282)
Q Consensus       134 vvivDd~~  141 (282)
                      +++|+|++
T Consensus       169 ~l~VgD~~  176 (220)
T d1zrna_         169 ILFVASNA  176 (220)
T ss_dssp             EEEEESCH
T ss_pred             EEEEecCh
Confidence            99999997

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=94.59  E-value=0.03  Score=44.14  Aligned_cols=59  Identities=19%  Similarity=0.254  Sum_probs=42.4

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcH
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIR   88 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~   88 (282)
                      ++..++.||||||+.....                                  .-|...+.|+++.+ ...+++.|.-+.
T Consensus         3 ~~~li~~DlDGTLl~~~~~----------------------------------i~~~~~~al~~l~~~Gi~~~i~TGR~~   48 (232)
T d1xvia_           3 QPLLVFSDLDGTLLDSHSY----------------------------------DWQPAAPWLTRLREANVPVILCSSKTS   48 (232)
T ss_dssp             CCEEEEEECTTTTSCSSCC----------------------------------SCCTTHHHHHHHHHTTCCEEEECSSCH
T ss_pred             CCEEEEEECCCCccCCcCc----------------------------------CCHHHHHHHHHHHHCCCEEEEEeCCCh
Confidence            4566777999999965321                                  12445677888864 488889998888


Q ss_pred             HHHHHHHhhhcCCC
Q 041003           89 SYAMMMAKLLNPKC  102 (282)
Q Consensus        89 ~Ya~~v~~~ldp~~  102 (282)
                      ..+..+++.+.-.+
T Consensus        49 ~~~~~~~~~~~~~~   62 (232)
T d1xvia_          49 AEMLYLQKTLGLQG   62 (232)
T ss_dssp             HHHHHHHHHTTCTT
T ss_pred             hhchhHHHHhccCC
Confidence            88888888876443

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.014  Score=45.71  Aligned_cols=51  Identities=12%  Similarity=0.126  Sum_probs=36.1

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIR   88 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~   88 (282)
                      +.|+||+||||+.-...  ...+                    ..    +++-||+.+.|+.+.+ .|.++|.|+.+.
T Consensus         3 ~Av~~DrDGtl~~~~~y--~~~~--------------------~~----~~~~~gv~e~l~~L~~~g~~~~ivTNq~~   54 (182)
T d2gmwa1           3 PAIFLDRDGTINVDHGY--VHEI--------------------DN----FEFIDGVIDAMRELKKMGFALVVVTNQSG   54 (182)
T ss_dssp             CEEEECSBTTTBCCCSS--CCSG--------------------GG----CCBCTTHHHHHHHHHHTTCEEEEEEECTH
T ss_pred             CEEEEeCCCCccCCCCC--CCCH--------------------HH----eeECCCHHHHHHHHhhcCchhhhhhccch
Confidence            46899999999863221  1100                    00    2355999999999985 599999999764

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.028  Score=44.33  Aligned_cols=30  Identities=13%  Similarity=-0.020  Sum_probs=20.5

Q ss_pred             cHHHHHHHHhcCceEEEEcCCcHHHHHHHH
Q 041003           66 YIRKFLKKASKMYDIYLCTTRIRSYAMMMA   95 (282)
Q Consensus        66 ~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~   95 (282)
                      ...+-|+++.+..-+++.|.+....+...+
T Consensus        22 ~~~~~i~~l~~~g~~~i~tgrr~~~~~~~~   51 (244)
T d2fuea1          22 EVAAFLQKLRSRVQIGVVGGSDYCKIAEQL   51 (244)
T ss_dssp             HHHHHHHHHTTTSEEEEECSSCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEecCChhhhhhhh
Confidence            356777888777777788777666655444

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.018  Score=47.19  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=40.7

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYA   91 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya   91 (282)
                      .+++||||||+++...                                  +-|...+.|+++.+. ..+++.|..+...+
T Consensus         6 li~~DlDGTL~~~~~~----------------------------------i~~~~~~al~~L~~~gi~v~i~TGR~~~~~   51 (271)
T d1rkqa_           6 LIAIDMDGTLLLPDHT----------------------------------ISPAVKNAIAAARARGVNVVLTTGRPYAGV   51 (271)
T ss_dssp             EEEECCCCCCSCTTSC----------------------------------CCHHHHHHHHHHHHTTCEEEEECSSCGGGT
T ss_pred             EEEEeCCccccCCCCc----------------------------------cCHHHHHHHHHHHHCCCEEEEECCCCHHHH
Confidence            4899999999875321                                  225567788888654 89999998888888


Q ss_pred             HHHHhhhc
Q 041003           92 MMMAKLLN   99 (282)
Q Consensus        92 ~~v~~~ld   99 (282)
                      ..+++.+.
T Consensus        52 ~~~~~~l~   59 (271)
T d1rkqa_          52 HNYLKELH   59 (271)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            88888864

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.025  Score=46.32  Aligned_cols=51  Identities=18%  Similarity=0.107  Sum_probs=34.8

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++||||||++...                                   .=|+..+|++.+.+ .+.+++.|+++...
T Consensus         4 k~VifDlDGTL~~~~~-----------------------------------~i~~a~e~i~~l~~~g~~~~~~TN~~~~~   48 (250)
T d2c4na1           4 KNVICDIDGVLMHDNV-----------------------------------AVPGAAEFLHGIMDKGLPLVLLTNYPSQT   48 (250)
T ss_dssp             CEEEEECBTTTEETTE-----------------------------------ECTTHHHHHHHHHHTTCCEEEEESCCSCC
T ss_pred             CEEEEECCCeeEECCC-----------------------------------cCccHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence            4689999999986421                                   12677788888864 47888888766444


Q ss_pred             HHHHHhh
Q 041003           91 AMMMAKL   97 (282)
Q Consensus        91 a~~v~~~   97 (282)
                      .+.+.+.
T Consensus        49 ~~~~~~~   55 (250)
T d2c4na1          49 GQDLANR   55 (250)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.41  E-value=0.038  Score=43.41  Aligned_cols=51  Identities=18%  Similarity=0.173  Sum_probs=35.2

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAM   92 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~   92 (282)
                      .|++||||||+.....+...                             ...|.+.+.|+++.+...++|-|..+...+.
T Consensus         2 Li~~DlDGTL~~~~~~~~~~-----------------------------~i~~~~~~~l~~l~~~~~v~i~TGR~~~~l~   52 (229)
T d1u02a_           2 LIFLDYDGTLVPIIMNPEES-----------------------------YADAGLLSLISDLKERFDTYIVTGRSPEEIS   52 (229)
T ss_dssp             EEEEECBTTTBCCCSCGGGC-----------------------------CCCHHHHHHHHHHHHHSEEEEECSSCHHHHH
T ss_pred             EEEEEecCCCCCCCCChhhC-----------------------------CCCHHHHHHHHHHhhCCCEEEEcCCCHHHhh
Confidence            47899999998643322111                             1457788999999888888887776655443

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=93.38  E-value=0.042  Score=44.89  Aligned_cols=57  Identities=18%  Similarity=0.143  Sum_probs=36.9

Q ss_pred             hhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEc
Q 041003            6 VYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCT   84 (282)
Q Consensus         6 l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T   84 (282)
                      ++++=| .+++||||||+++...                                  . |+..++|+.+.+ ...+++.|
T Consensus         3 ~~~~ik-~vlFDlDGTL~~~~~~----------------------------------i-~~a~e~l~~l~~~g~~~~~~T   46 (261)
T d1vjra_           3 VLDKIE-LFILDMDGTFYLDDSL----------------------------------L-PGSLEFLETLKEKNKRFVFFT   46 (261)
T ss_dssp             GGGGCC-EEEECCBTTTEETTEE----------------------------------C-TTHHHHHHHHHHTTCEEEEEE
T ss_pred             hHHhCC-EEEEeCCCeeEECCcc----------------------------------C-chHHHHHHHHHHcCCCEEEEe
Confidence            344444 6799999999875320                                  2 677888888864 46778888


Q ss_pred             CCcHHHHHHHHhhh
Q 041003           85 TRIRSYAMMMAKLL   98 (282)
Q Consensus        85 ~~~~~Ya~~v~~~l   98 (282)
                      ++...-...+.+.+
T Consensus        47 N~~~~~~~~~~~~~   60 (261)
T d1vjra_          47 NNSSLGAQDYVRKL   60 (261)
T ss_dssp             SCTTSCHHHHHHHH
T ss_pred             CCCCCCHHHHHHHH
Confidence            76544444444443

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.11  E-value=0.08  Score=41.50  Aligned_cols=57  Identities=16%  Similarity=0.211  Sum_probs=40.2

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      +.+++|+||||+++...                                  +.|...+.|+++.+ -..+++.|.-+...
T Consensus         3 K~i~~D~DGTL~~~~~~----------------------------------i~~~~~~~l~~l~~~gi~v~~~TGR~~~~   48 (230)
T d1wr8a_           3 KAISIDIDGTITYPNRM----------------------------------IHEKALEAIRRAESLGIPIMLVTGNTVQF   48 (230)
T ss_dssp             CEEEEESTTTTBCTTSC----------------------------------BCHHHHHHHHHHHHTTCCEEEECSSCHHH
T ss_pred             eEEEEecCCCCcCCCCc----------------------------------cCHHHHHHHHHHHhCCCeEEEEeCCcHHH
Confidence            47899999999875321                                  22445566666654 46788888888888


Q ss_pred             HHHHHhhhcCCC
Q 041003           91 AMMMAKLLNPKC  102 (282)
Q Consensus        91 a~~v~~~ldp~~  102 (282)
                      +..++..+...+
T Consensus        49 ~~~~~~~~~~~~   60 (230)
T d1wr8a_          49 AEAASILIGTSG   60 (230)
T ss_dssp             HHHHHHHHTCCS
T ss_pred             HHHHHHhcCCCc
Confidence            888888776554

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.07  E-value=0.023  Score=45.05  Aligned_cols=79  Identities=18%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             EEEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCC-----CC---CceeccccccccC
Q 041003           60 LVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDF-----KE---KGKKSGDLVLRQE  131 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~-----~~---~~~KdL~~l~~~~  131 (282)
                      .+...||+.++|+++..  ...|.|++.+.++..+++.++... +| ...+++.++.     ..   .+.+-+++++-++
T Consensus        83 ~~~~~~g~~~~L~~l~~--~~~i~t~~~~~~~~~~l~~~~l~~-~f-~~~~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p  158 (222)
T d2fdra1          83 DVKIIDGVKFALSRLTT--PRCICSNSSSHRLDMMLTKVGLKP-YF-APHIYSAKDLGADRVKPKPDIFLHGAAQFGVSP  158 (222)
T ss_dssp             HCCBCTTHHHHHHHCCS--CEEEEESSCHHHHHHHHHHTTCGG-GT-TTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCG
T ss_pred             ccchhhhHHHHhhhccc--cceeeeecchhhhhhhhccccccc-cc-ceeecccccccccccccCHHHHHHHHHhhCCCC
Confidence            36688999999999975  457899999999999999998775 56 4555554422     11   2344555566688


Q ss_pred             CceEEEcCChh
Q 041003          132 WGVVIVDDTEK  142 (282)
Q Consensus       132 ~~vvivDd~~~  142 (282)
                      +++++|+|++.
T Consensus       159 ~~~l~vgDs~~  169 (222)
T d2fdra1         159 DRVVVVEDSVH  169 (222)
T ss_dssp             GGEEEEESSHH
T ss_pred             ceEEEEcCCHH
Confidence            99999999974

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=92.97  E-value=0.086  Score=43.03  Aligned_cols=54  Identities=20%  Similarity=0.180  Sum_probs=33.3

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRSYAM   92 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~   92 (282)
                      .+++||||||+++...                                  +-|...+.|+++.+.-.+++-|..+...+.
T Consensus         4 li~~DlDGTL~~~~~~----------------------------------i~~~~~~al~~l~~~~~~~i~TGR~~~~~~   49 (267)
T d1nf2a_           4 VFVFDLDGTLLNDNLE----------------------------------ISEKDRRNIEKLSRKCYVVFASGRMLVSTL   49 (267)
T ss_dssp             EEEEECCCCCSCTTSC----------------------------------CCHHHHHHHHHHTTTSEEEEECSSCHHHHH
T ss_pred             EEEEeCCccccCCcCc----------------------------------cCHHHHHHHHHHHcCCEEEEECCCChHHHH
Confidence            5799999999975321                                  224456666666665556665555555555


Q ss_pred             HHHhhhcC
Q 041003           93 MMAKLLNP  100 (282)
Q Consensus        93 ~v~~~ldp  100 (282)
                      .+++.+.+
T Consensus        50 ~~~~~~~~   57 (267)
T d1nf2a_          50 NVEKKYFK   57 (267)
T ss_dssp             HHHHHHSS
T ss_pred             HHHHHhcc
Confidence            56555433

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=92.76  E-value=0.084  Score=43.15  Aligned_cols=56  Identities=21%  Similarity=0.211  Sum_probs=41.4

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYA   91 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya   91 (282)
                      .+++||||||++....  .                                =|...+.|+++.+ ...+++-|.-+...+
T Consensus         3 li~~DlDGTLl~~~~~--i--------------------------------~~~~~~~l~~l~~~Gi~~~i~TGR~~~~~   48 (285)
T d1nrwa_           3 LIAIDLDGTLLNSKHQ--V--------------------------------SLENENALRQAQRDGIEVVVSTGRAHFDV   48 (285)
T ss_dssp             EEEEECCCCCSCTTSC--C--------------------------------CHHHHHHHHHHHHTTCEEEEECSSCHHHH
T ss_pred             EEEEECCccccCCCCc--c--------------------------------CHHHHHHHHHHHHCCCEEEEECCCCHHHH
Confidence            5899999999975321  1                                1445677777764 488888888888888


Q ss_pred             HHHHhhhcCCC
Q 041003           92 MMMAKLLNPKC  102 (282)
Q Consensus        92 ~~v~~~ldp~~  102 (282)
                      ..+++.++...
T Consensus        49 ~~~~~~l~~~~   59 (285)
T d1nrwa_          49 MSIFEPLGIKT   59 (285)
T ss_dssp             HHHHGGGTCCC
T ss_pred             HHHHHHhCCCc
Confidence            88888887653

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=92.69  E-value=0.048  Score=43.91  Aligned_cols=55  Identities=20%  Similarity=0.226  Sum_probs=38.9

Q ss_pred             CCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcCceEEEEcCCcHH
Q 041003           10 KKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKMYDIYLCTTRIRS   89 (282)
Q Consensus        10 ~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~yei~i~T~~~~~   89 (282)
                      +|..+++||||||+.....     +                              ..++++++..++...+++-|.-+..
T Consensus         2 ~~~li~~DlDGTL~~~~~~-----~------------------------------~~~~~~~~~~~~g~~v~i~TGR~~~   46 (244)
T d1s2oa1           2 RQLLLISDLDNTWVGDQQA-----L------------------------------EHLQEYLGDRRGNFYLAYATGRSYH   46 (244)
T ss_dssp             CSEEEEECTBTTTBSCHHH-----H------------------------------HHHHHHHHTTGGGEEEEEECSSCHH
T ss_pred             CceEEEEECcccCCCCCCC-----H------------------------------HHHHHHHHHHcCCCEEEEECCCCHH
Confidence            4667889999999854211     0                              1135566666777888888888888


Q ss_pred             HHHHHHhhhc
Q 041003           90 YAMMMAKLLN   99 (282)
Q Consensus        90 Ya~~v~~~ld   99 (282)
                      .+.++++.+.
T Consensus        47 ~~~~~~~~~~   56 (244)
T d1s2oa1          47 SARELQKQVG   56 (244)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            8888887764

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.59  E-value=0.064  Score=41.45  Aligned_cols=78  Identities=10%  Similarity=0.014  Sum_probs=53.2

Q ss_pred             EEecccHHHHHHHHhcC-ceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC--C----ceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASKM-YDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE--K----GKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~--~----~~KdL~~l~~~~~~  133 (282)
                      ..+.||+.++|+.+++. +.++|.|++.+ ++..+++.++-.. +|  +-+++.++...  +    +..-++++  +.+.
T Consensus        78 ~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~-~~~~~l~~~~l~~-~f--d~i~~~~~~~~~KP~p~~~~~~~~~~--~~~~  151 (187)
T d2fi1a1          78 PILFEGVSDLLEDISNQGGRHFLVSHRND-QVLEILEKTSIAA-YF--TEVVTSSSGFKRKPNPESMLYLREKY--QISS  151 (187)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHTTCGG-GE--EEEECGGGCCCCTTSCHHHHHHHHHT--TCSS
T ss_pred             CcccchhHHHHHHHHhhhccccccccCcc-chhhhhhhhcccc-cc--ccccccccccccCCCHHHHHHHHHHc--CCCC
Confidence            35679999999999765 99999998765 5566788887664 67  56776665332  1    11122223  3456


Q ss_pred             eEEEcCChhhh
Q 041003          134 VVIVDDTEKVW  144 (282)
Q Consensus       134 vvivDd~~~~~  144 (282)
                      +|+|+|++.--
T Consensus       152 ~l~vgDs~~Di  162 (187)
T d2fi1a1         152 GLVIGDRPIDI  162 (187)
T ss_dssp             EEEEESSHHHH
T ss_pred             eEEEeCCHHHH
Confidence            99999998543

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=92.04  E-value=0.045  Score=44.71  Aligned_cols=43  Identities=9%  Similarity=0.014  Sum_probs=25.2

Q ss_pred             cchhHHHHHHHHhCCeEecccCCCccEEEEcCCCCCcHHHHHHHHCCCceec
Q 041003          209 FEFPLLKWRAGELGAACTDVYNLSVAQVVSVSSRLGIKGHRLAEQHNKFLVH  260 (282)
Q Consensus       209 ~~~~~l~~~~~~~Ga~v~~~~~~~vTHlV~~~~~~~t~K~~~A~~~gi~IV~  260 (282)
                      |+..-+...++.+|..-        .+++.-+|+..++ +.-|++.|++-|.
T Consensus       181 P~p~~~~~al~~l~i~~--------~~~~mIGDs~~~D-I~gA~~aG~~si~  223 (253)
T d1wvia_         181 PEAVIMNKALDRLGVKR--------HEAIMVGDNYLTD-ITAGIKNDIATLL  223 (253)
T ss_dssp             TSHHHHHHHHHHHTSCG--------GGEEEEESCTTTT-HHHHHHTTCEEEE
T ss_pred             CCcccceehhhhccccc--------cceEEEcCChHHH-HHHHHHCCCCEEE
Confidence            45666777788886422        3556554343433 5667788875443

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.93  E-value=0.073  Score=42.27  Aligned_cols=58  Identities=12%  Similarity=0.135  Sum_probs=42.7

Q ss_pred             eeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCcHHH
Q 041003           12 LHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRIRSY   90 (282)
Q Consensus        12 l~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Y   90 (282)
                      ..+++|+||||+.+...                                  .-|+..+-|+.+.+ ...+++.|.....+
T Consensus         4 Kli~~D~DGTL~~~~~~----------------------------------i~~~~~~al~~l~~~g~~v~~~TGr~~~~   49 (225)
T d1l6ra_           4 RLAAIDVDGNLTDRDRL----------------------------------ISTKAIESIRSAEKKGLTVSLLSGNVIPV   49 (225)
T ss_dssp             CEEEEEHHHHSBCTTSC----------------------------------BCHHHHHHHHHHHHTTCEEEEECSSCHHH
T ss_pred             EEEEEecCCCCcCCCCc----------------------------------CCHHHHHHHHHHHHCCCEEEEEcCCchhh
Confidence            47899999999965321                                  22556677777764 47788888888888


Q ss_pred             HHHHHhhhcCCCc
Q 041003           91 AMMMAKLLNPKCE  103 (282)
Q Consensus        91 a~~v~~~ldp~~~  103 (282)
                      +..+...+.....
T Consensus        50 ~~~~~~~~~~~~~   62 (225)
T d1l6ra_          50 VYALKIFLGINGP   62 (225)
T ss_dssp             HHHHHHHHTCCSC
T ss_pred             hHHHHHHcCCCce
Confidence            8999888876553

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.88  E-value=0.028  Score=43.55  Aligned_cols=42  Identities=7%  Similarity=0.025  Sum_probs=35.7

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKC  102 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~  102 (282)
                      ....+|+.++++.+.+ .+.+++.|++...++....+......
T Consensus        74 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (210)
T d1j97a_          74 ITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDY  116 (210)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSE
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEeecccccccccchhhccchhh
Confidence            4678999999999975 58899999999999999998876654

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=91.85  E-value=0.1  Score=41.48  Aligned_cols=78  Identities=5%  Similarity=-0.068  Sum_probs=60.1

Q ss_pred             EEecccHHHHHHHHhcCceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCce
Q 041003           61 VKVRSYIRKFLKKASKMYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWGV  134 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~v  134 (282)
                      ....|++.+.|+++.. +.+.+.|++...++..+++.+.-.. +|  +.+++.++...      .+.+-+++++-+++++
T Consensus        92 ~~~~~~~~~~L~~l~~-~~~~v~s~~~~~~~~~~~~~~~~~~-~f--d~v~~s~~~~~~KP~p~~f~~a~~~lg~~p~e~  167 (245)
T d1qq5a_          92 LTPYPDAAQCLAELAP-LKRAILSNGAPDMLQALVANAGLTD-SF--DAVISVDAKRVFKPHPDSYALVEEVLGVTPAEV  167 (245)
T ss_dssp             CCBCTTHHHHHHHHTT-SEEEEEESSCHHHHHHHHHHTTCGG-GC--SEEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGE
T ss_pred             cccchhhhHHHHHHhh-hceeEEeccchHHHHHHHhhccccc-cc--ccccccccccccCccHHHHHHHHHHhCCChhhE
Confidence            4567999999999975 5789999999999999998876544 67  66777766542      2344556667688999


Q ss_pred             EEEcCChh
Q 041003          135 VIVDDTEK  142 (282)
Q Consensus       135 vivDd~~~  142 (282)
                      ++|+|++.
T Consensus       168 l~VgD~~~  175 (245)
T d1qq5a_         168 LFVSSNGF  175 (245)
T ss_dssp             EEEESCHH
T ss_pred             EEEeCCHH
Confidence            99999973

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=91.84  E-value=0.017  Score=46.85  Aligned_cols=93  Identities=11%  Similarity=0.085  Sum_probs=48.8

Q ss_pred             cchhcCCCeeEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCccee-e-cceeEEEEecccHHHHHHHHh-cCceE
Q 041003            4 EMVYRQKKLHLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFK-M-ASELFLVKVRSYIRKFLKKAS-KMYDI   80 (282)
Q Consensus         4 ~~l~~~~kl~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-~~~~~~v~~RP~l~~FL~~~~-~~yei   80 (282)
                      +++-..+++.+|||+|+|++.++.-.  ......+..+...-......+. . .+..-.-.-=||..+|++.+. +-.+|
T Consensus        28 ~~~~g~~P~AIifDIDETvLdnspy~--~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~A~p~pga~~fl~~~~~~Gv~I  105 (209)
T d2b82a1          28 NSLAGRPPMAVGFDIDDTVLFSSPGF--WRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAI  105 (209)
T ss_dssp             HHTTTCCCCEEEECCBTTTEECHHHH--HHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEE
T ss_pred             HhcCCCCCceEEEcchhhhhcCcHHH--HhhhhhcCcCcccccCCCcchHHHhcccccccCcchhHHHHHHHHHHcCCeE
Confidence            34455666799999999999986420  0000000000000000000000 0 000000112379999999996 56999


Q ss_pred             EEEcCCcHHHHHHHHhhh
Q 041003           81 YLCTTRIRSYAMMMAKLL   98 (282)
Q Consensus        81 ~i~T~~~~~Ya~~v~~~l   98 (282)
                      +.-|+-.+...+..++.|
T Consensus       106 fyVTnR~~~~~e~T~~nL  123 (209)
T d2b82a1         106 FFVTGRSPTKTETVSKTL  123 (209)
T ss_dssp             EEEECSCCCSSCCHHHHH
T ss_pred             EEEeCCchhhHHHHHHHH
Confidence            999997776666666554

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=91.62  E-value=0.057  Score=42.52  Aligned_cols=77  Identities=13%  Similarity=0.098  Sum_probs=55.0

Q ss_pred             EEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcCCCcccccccEEEccCCCC------CceeccccccccCCc
Q 041003           61 VKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNPKCEYHISSRLITREDFKE------KGKKSGDLVLRQEWG  133 (282)
Q Consensus        61 v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~~~~~  133 (282)
                      ....||+.++|+.+.+ .+.+.+.|++  .++..+++.++-.+ +|  ..+++.++...      .+.+-++.++-++++
T Consensus        90 ~~~~~g~~~~l~~l~~~~~~i~i~s~~--~~~~~~l~~~~l~~-~f--~~i~~~~~~~~~KP~~~~~~~~l~~~~i~~~~  164 (221)
T d1o08a_          90 ADVYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLTG-YF--DAIADPAEVAASKPAPDIFIAAAHAVGVAPSE  164 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCSC--TTHHHHHHHTTCGG-GC--SEECCTTTSSSCTTSTHHHHHHHHHTTCCGGG
T ss_pred             ccccCCceeccccccccccceEEEeec--chhhHHHHhhcccc-cc--ccccccccccccccChHHHHHHHHHcCCCCce
Confidence            4578999999999974 5677787775  45788888876554 56  55666665432      134455566668899


Q ss_pred             eEEEcCChh
Q 041003          134 VVIVDDTEK  142 (282)
Q Consensus       134 vvivDd~~~  142 (282)
                      +|+|||++.
T Consensus       165 ~l~VgD~~~  173 (221)
T d1o08a_         165 SIGLEDSQA  173 (221)
T ss_dssp             EEEEESSHH
T ss_pred             EEEEecCHH
Confidence            999999973

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=90.20  E-value=0.18  Score=40.70  Aligned_cols=35  Identities=26%  Similarity=0.164  Sum_probs=26.3

Q ss_pred             ccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhhc
Q 041003           65 SYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLLN   99 (282)
Q Consensus        65 P~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~ld   99 (282)
                      |...+.|+++. +...+++-|.-+...+..+++.+.
T Consensus        31 ~~~~~al~~l~~~Gi~v~i~TGR~~~~~~~~~~~l~   66 (283)
T d2b30a1          31 SENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEEN   66 (283)
T ss_dssp             HHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence            45566677664 567889999989888888887664

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=90.17  E-value=0.07  Score=43.41  Aligned_cols=56  Identities=11%  Similarity=0.068  Sum_probs=37.3

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhcC-ceEEEEcCCcHHHH
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASKM-YDIYLCTTRIRSYA   91 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~~-yei~i~T~~~~~Ya   91 (282)
                      .+++||||||+.+...  .                               ..|...+.|+.+.+. ..+++.|.-+...+
T Consensus         4 li~~DlDGTLl~~~~~--~-------------------------------~~~~~~~~l~~l~~~gi~~~i~TGR~~~~~   50 (269)
T d1rlma_           4 VIVTDMDGTFLNDAKT--Y-------------------------------NQPRFMAQYQELKKRGIKFVVASGNQYYQL   50 (269)
T ss_dssp             EEEECCCCCCSCTTSC--C-------------------------------CHHHHHHHHHHHHHHTCEEEEECSSCHHHH
T ss_pred             EEEEeCCccCcCCCCc--C-------------------------------ChHHHHHHHHHHHHCCCEEEEEcCCCHHHH
Confidence            5789999999975331  1                               124456667777544 67888887777777


Q ss_pred             HHHHhhhcCC
Q 041003           92 MMMAKLLNPK  101 (282)
Q Consensus        92 ~~v~~~ldp~  101 (282)
                      .++++.+...
T Consensus        51 ~~~~~~l~~~   60 (269)
T d1rlma_          51 ISFFPELKDE   60 (269)
T ss_dssp             GGGCTTTTTT
T ss_pred             HHHHHHhCcc
Confidence            6666666544

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.15  E-value=0.099  Score=42.43  Aligned_cols=52  Identities=15%  Similarity=0.269  Sum_probs=34.3

Q ss_pred             eEEEeCCCceeeeeccCccchhhHHhhhhhcCCCCCCcceeecceeEEEEecccHHHHHHHHhc-CceEEEEcCCc----
Q 041003           13 HLVLDLDQTLPHAVDIDILASKDRKYLMKQRGSSSDGDLFKMASELFLVKVRSYIRKFLKKASK-MYDIYLCTTRI----   87 (282)
Q Consensus        13 ~LVLDLD~TLihs~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~RP~l~~FL~~~~~-~yei~i~T~~~----   87 (282)
                      .+++||||||+....                                  .. |+..++|+.+.+ ...+++.|+++    
T Consensus         4 ~v~fDlDGTL~~~~~----------------------------------~i-~~a~~~i~~l~~~g~~~~~~Tn~s~~~~   48 (253)
T d1yv9a1           4 GYLIDLDGTIYLGKE----------------------------------PI-PAGKRFVERLQEKDLPFLFVTNNTTKSP   48 (253)
T ss_dssp             EEEECCBTTTEETTE----------------------------------EC-HHHHHHHHHHHHTTCCEEEEECCCSSCH
T ss_pred             EEEEcCCCccEeCCC----------------------------------cC-ccHHHHHHHHHHCCCCEEEEeCCCCCCH
Confidence            689999999976422                                  12 677788888864 47777888655    


Q ss_pred             HHHHHHHHhhhc
Q 041003           88 RSYAMMMAKLLN   99 (282)
Q Consensus        88 ~~Ya~~v~~~ld   99 (282)
                      +.++..+...++
T Consensus        49 ~~~~~~L~~~~~   60 (253)
T d1yv9a1          49 ETVAQRLANEFD   60 (253)
T ss_dssp             HHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcC
Confidence            444444444444

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=90.04  E-value=0.27  Score=38.64  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=26.6

Q ss_pred             HHHHHH-hcCceEEEEcCCcHHHHHHHHhhhcCCC
Q 041003           69 KFLKKA-SKMYDIYLCTTRIRSYAMMMAKLLNPKC  102 (282)
Q Consensus        69 ~FL~~~-~~~yei~i~T~~~~~Ya~~v~~~ldp~~  102 (282)
                      +-|+++ .+-..+++-|.-+...+..+++.++...
T Consensus        24 ~ai~~l~~~G~~~~~aTGR~~~~~~~~~~~~~~~~   58 (243)
T d1wzca1          24 PIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVET   58 (243)
T ss_dssp             HHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhcccc
Confidence            345555 3568899999999999999999998764

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.04  E-value=0.34  Score=40.72  Aligned_cols=41  Identities=10%  Similarity=0.113  Sum_probs=37.0

Q ss_pred             EEEecccHHHHHHHHhc-CceEEEEcCCcHHHHHHHHhhhcC
Q 041003           60 LVKVRSYIRKFLKKASK-MYDIYLCTTRIRSYAMMMAKLLNP  100 (282)
Q Consensus        60 ~v~~RP~l~~FL~~~~~-~yei~i~T~~~~~Ya~~v~~~ldp  100 (282)
                      -+.+|||..+|++.+.+ ...++|+|+|-..+++++++.+..
T Consensus       133 ~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~ie~vl~~lg~  174 (291)
T d2bdua1         133 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGV  174 (291)
T ss_dssp             CCCBCBTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHHHTTC
T ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHcCC
Confidence            47799999999999975 689999999999999999999854

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=0.056  Score=42.01  Aligned_cols=81  Identities=15%  Similarity=-0.071  Sum_probs=53.2

Q ss_pred             EEecccHHHHHHHHh-cCceEEEEcCCcHHHHHHHHhhh----cCCCcccccccEEEccCCCC------Cceeccccccc
Q 041003           61 VKVRSYIRKFLKKAS-KMYDIYLCTTRIRSYAMMMAKLL----NPKCEYHISSRLITREDFKE------KGKKSGDLVLR  129 (282)
Q Consensus        61 v~~RP~l~~FL~~~~-~~yei~i~T~~~~~Ya~~v~~~l----dp~~~~f~~~rv~~r~~~~~------~~~KdL~~l~~  129 (282)
                      ...+|++.++|..+. +.+.+++-|++....+....+..    +- ..+|  +.+++.++...      .+.+-++.++-
T Consensus        98 ~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~-~~~f--d~i~~s~~~~~~KP~~~~~~~~~~~~~~  174 (225)
T d1zd3a1          98 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCEL-KMHF--DFLIESCQVGMVKPEPQIYKFLLDTLKA  174 (225)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHH-HTTS--SEEEEHHHHTCCTTCHHHHHHHHHHHTC
T ss_pred             CCCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcCh-Hhhc--cEEEeccccccchhHHHHHHHHhhhccc
Confidence            568999999999996 45899999987665544433321    11 1246  56676655432      23344555666


Q ss_pred             cCCceEEEcCChhhh
Q 041003          130 QEWGVVIVDDTEKVW  144 (282)
Q Consensus       130 ~~~~vvivDd~~~~~  144 (282)
                      +++++++|+|++.-.
T Consensus       175 ~p~e~l~VgD~~~Di  189 (225)
T d1zd3a1         175 SPSEVVFLDDIGANL  189 (225)
T ss_dssp             CGGGEEEEESCHHHH
T ss_pred             CccceeEEecCHHHH
Confidence            789999999997433

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=80.90  E-value=0.25  Score=38.27  Aligned_cols=16  Identities=31%  Similarity=0.376  Sum_probs=13.2

Q ss_pred             eeEEEeCCCceeeeec
Q 041003           12 LHLVLDLDQTLPHAVD   27 (282)
Q Consensus        12 l~LVLDLD~TLihs~~   27 (282)
                      ..+++|+||||+++..
T Consensus         5 k~iiFD~DGTL~Ds~~   20 (224)
T d2hsza1           5 KLIGFDLDGTLVNSLP   20 (224)
T ss_dssp             SEEEECSBTTTEECHH
T ss_pred             CEEEEeCCCCcccCHH
Confidence            4678999999998753